Query 013012
Match_columns 451
No_of_seqs 317 out of 3653
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 08:38:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1462 Translation initiation 100.0 2E-58 4.4E-63 423.7 26.2 410 1-451 8-422 (433)
2 COG1208 GCD1 Nucleoside-diphos 100.0 4.2E-49 9.1E-54 382.8 34.5 343 2-444 1-355 (358)
3 KOG1322 GDP-mannose pyrophosph 100.0 1.1E-49 2.5E-54 359.3 27.6 331 2-430 9-350 (371)
4 KOG1461 Translation initiation 100.0 2.5E-48 5.4E-53 377.2 32.4 370 3-443 25-414 (673)
5 COG0448 GlgC ADP-glucose pyrop 100.0 5.6E-49 1.2E-53 368.7 26.8 334 2-432 5-363 (393)
6 PRK05293 glgC glucose-1-phosph 100.0 9.5E-48 2.1E-52 380.9 31.3 349 1-445 1-378 (380)
7 PRK00844 glgC glucose-1-phosph 100.0 9E-47 2E-51 375.7 32.3 353 2-431 5-382 (407)
8 PRK02862 glgC glucose-1-phosph 100.0 1.2E-46 2.5E-51 376.6 30.8 363 2-444 3-421 (429)
9 PLN02241 glucose-1-phosphate a 100.0 2.1E-45 4.5E-50 368.6 31.7 350 2-430 3-400 (436)
10 PRK00725 glgC glucose-1-phosph 100.0 4E-45 8.8E-50 365.0 31.4 343 2-431 15-394 (425)
11 KOG1460 GDP-mannose pyrophosph 100.0 6.4E-46 1.4E-50 329.3 22.1 370 1-443 1-400 (407)
12 TIGR02091 glgC glucose-1-phosp 100.0 1.3E-43 2.8E-48 349.1 29.7 337 5-430 1-360 (361)
13 TIGR01208 rmlA_long glucose-1- 100.0 6.8E-43 1.5E-47 342.7 34.1 340 4-441 1-352 (353)
14 TIGR02092 glgD glucose-1-phosp 100.0 1.1E-43 2.3E-48 350.4 26.8 335 2-432 2-356 (369)
15 COG1207 GlmU N-acetylglucosami 100.0 6.1E-43 1.3E-47 327.3 29.2 354 1-446 1-387 (460)
16 PRK14355 glmU bifunctional N-a 100.0 2E-39 4.2E-44 328.9 34.5 347 2-444 3-385 (459)
17 PRK14358 glmU bifunctional N-a 100.0 9.1E-40 2E-44 331.5 31.7 345 1-445 6-388 (481)
18 PRK14356 glmU bifunctional N-a 100.0 1.9E-38 4.2E-43 322.0 31.2 344 3-444 6-386 (456)
19 PRK14352 glmU bifunctional N-a 100.0 3.3E-38 7.2E-43 321.4 32.6 345 2-444 4-387 (482)
20 PRK09451 glmU bifunctional N-a 100.0 5.8E-38 1.3E-42 318.1 31.2 344 1-444 4-382 (456)
21 PRK14353 glmU bifunctional N-a 100.0 7.1E-37 1.5E-41 309.7 34.5 344 1-442 4-366 (446)
22 TIGR01173 glmU UDP-N-acetylglu 100.0 8.2E-37 1.8E-41 310.1 33.1 342 3-445 1-379 (451)
23 PRK14354 glmU bifunctional N-a 100.0 2.7E-36 5.9E-41 306.5 33.9 346 1-444 1-381 (458)
24 PRK14359 glmU bifunctional N-a 100.0 7.3E-36 1.6E-40 301.1 33.4 343 1-446 1-400 (430)
25 PRK14357 glmU bifunctional N-a 100.0 3.9E-35 8.5E-40 297.2 31.5 176 3-225 1-179 (448)
26 PRK14360 glmU bifunctional N-a 100.0 2.2E-34 4.8E-39 292.0 33.5 182 3-226 2-187 (450)
27 COG1209 RfbA dTDP-glucose pyro 100.0 5.6E-36 1.2E-40 266.2 18.5 282 3-392 1-284 (286)
28 TIGR01105 galF UTP-glucose-1-p 100.0 3.1E-32 6.7E-37 257.8 22.7 234 2-329 3-276 (297)
29 PF00483 NTP_transferase: Nucl 100.0 1.2E-32 2.7E-37 257.1 19.3 239 4-331 1-247 (248)
30 cd04198 eIF-2B_gamma_N The N-t 100.0 3.9E-32 8.4E-37 247.3 20.9 211 3-220 1-214 (214)
31 cd06425 M1P_guanylylT_B_like_N 100.0 2.8E-31 6E-36 245.4 21.6 228 3-330 1-233 (233)
32 PRK15480 glucose-1-phosphate t 100.0 7E-31 1.5E-35 247.9 23.3 205 1-244 1-210 (292)
33 cd06428 M1P_guanylylT_A_like_N 100.0 5.6E-31 1.2E-35 246.9 22.2 183 5-224 1-191 (257)
34 cd04197 eIF-2B_epsilon_N The N 100.0 1E-30 2.2E-35 238.7 20.3 203 3-220 1-217 (217)
35 PRK10122 GalU regulator GalF; 100.0 2.4E-30 5.2E-35 245.6 23.1 236 2-331 3-279 (297)
36 cd02538 G1P_TT_short G1P_TT_sh 100.0 4.2E-30 9E-35 238.6 22.1 233 3-329 1-237 (240)
37 TIGR01207 rmlA glucose-1-phosp 100.0 5.3E-30 1.1E-34 241.7 21.9 202 4-244 1-206 (286)
38 TIGR02623 G1P_cyt_trans glucos 100.0 8E-30 1.7E-34 238.0 21.5 225 4-331 1-246 (254)
39 cd02507 eIF-2B_gamma_N_like Th 100.0 8.7E-29 1.9E-33 225.5 20.2 206 3-220 1-216 (216)
40 cd02541 UGPase_prokaryotic Pro 100.0 2.8E-28 6E-33 230.1 21.6 235 3-329 1-264 (267)
41 TIGR01099 galU UTP-glucose-1-p 100.0 3.6E-28 7.8E-33 228.5 21.6 188 3-225 1-215 (260)
42 cd04189 G1P_TT_long G1P_TT_lon 100.0 6.3E-28 1.4E-32 223.6 22.5 232 3-331 1-235 (236)
43 cd06422 NTP_transferase_like_1 100.0 4.8E-28 1E-32 222.0 20.7 194 4-244 1-197 (221)
44 PRK13389 UTP--glucose-1-phosph 100.0 1.1E-27 2.4E-32 227.8 22.0 232 3-329 9-279 (302)
45 cd02524 G1P_cytidylyltransfera 100.0 7.6E-28 1.7E-32 225.0 20.5 224 5-330 1-246 (253)
46 cd06915 NTP_transferase_WcbM_l 100.0 4.8E-27 1E-31 215.7 21.8 198 5-244 1-198 (223)
47 cd06426 NTP_transferase_like_2 100.0 6.9E-27 1.5E-31 214.2 21.5 194 5-244 1-194 (220)
48 cd04181 NTP_transferase NTP_tr 99.9 1.4E-26 3E-31 211.7 20.7 199 5-243 1-200 (217)
49 cd04183 GT2_BcE_like GT2_BcbE_ 99.9 8.6E-24 1.9E-28 195.2 20.3 175 5-222 1-179 (231)
50 cd02508 ADP_Glucose_PP ADP-glu 99.9 1.8E-24 3.9E-29 195.0 14.5 128 5-135 1-143 (200)
51 cd02509 GDP-M1P_Guanylyltransf 99.9 1.3E-23 2.8E-28 197.9 19.0 192 3-226 1-208 (274)
52 cd02523 PC_cytidylyltransferas 99.9 1.9E-23 4.2E-28 192.6 19.5 175 5-224 1-177 (229)
53 COG1210 GalU UDP-glucose pyrop 99.9 8E-22 1.7E-26 176.1 19.2 186 3-223 5-218 (291)
54 TIGR01479 GMP_PMI mannose-1-ph 99.9 3.5E-21 7.7E-26 194.0 20.9 192 3-226 1-210 (468)
55 cd02540 GT2_GlmU_N_bac N-termi 99.9 6.7E-21 1.5E-25 175.6 19.7 179 5-226 1-183 (229)
56 PRK05450 3-deoxy-manno-octulos 99.9 6.5E-20 1.4E-24 170.8 21.1 186 1-225 1-194 (245)
57 cd02517 CMP-KDO-Synthetase CMP 99.8 1.1E-19 2.4E-24 168.7 19.8 182 2-225 1-191 (239)
58 COG0836 {ManC} Mannose-1-phosp 99.8 5.8E-19 1.3E-23 161.4 20.0 191 2-222 1-208 (333)
59 PRK13368 3-deoxy-manno-octulos 99.8 1.7E-18 3.7E-23 160.5 19.4 181 1-223 1-187 (238)
60 PRK15460 cpsB mannose-1-phosph 99.8 4.3E-18 9.2E-23 169.9 20.5 193 1-224 4-217 (478)
61 COG1213 Predicted sugar nucleo 99.7 7.1E-17 1.5E-21 142.0 13.1 108 2-118 3-112 (239)
62 PLN02917 CMP-KDO synthetase 99.7 4.8E-16 1E-20 147.1 17.0 183 1-223 46-236 (293)
63 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.7 9.9E-16 2.2E-20 139.5 13.1 135 309-446 45-193 (231)
64 COG4750 LicC CTP:phosphocholin 99.7 3.3E-16 7.2E-21 131.7 8.4 102 3-114 1-104 (231)
65 PF12804 NTP_transf_3: MobA-li 99.7 8.6E-16 1.9E-20 133.3 11.2 119 5-138 1-123 (160)
66 cd05636 LbH_G1P_TT_C_like Puta 99.6 8.5E-15 1.8E-19 127.3 14.5 113 333-445 23-161 (163)
67 TIGR00454 conserved hypothetic 99.6 7.6E-15 1.6E-19 129.5 12.8 121 3-136 1-124 (183)
68 cd04652 LbH_eIF2B_gamma_C eIF- 99.6 1.9E-14 4.2E-19 109.4 10.8 79 366-444 2-80 (81)
69 cd05636 LbH_G1P_TT_C_like Puta 99.6 4.4E-14 9.4E-19 122.8 14.2 88 342-429 14-102 (163)
70 TIGR00466 kdsB 3-deoxy-D-manno 99.6 9E-14 2E-18 128.3 17.0 187 5-226 2-195 (238)
71 TIGR02287 PaaY phenylacetic ac 99.6 3.8E-14 8.2E-19 125.3 12.8 100 346-445 9-118 (192)
72 PRK00155 ispD 2-C-methyl-D-ery 99.6 1.6E-13 3.4E-18 126.2 16.9 121 1-131 2-126 (227)
73 PRK13627 carnitine operon prot 99.6 6.7E-14 1.5E-18 124.1 13.8 101 345-445 10-120 (196)
74 TIGR00453 ispD 2-C-methyl-D-er 99.6 1.6E-13 3.5E-18 125.3 16.6 116 4-130 1-120 (217)
75 cd04745 LbH_paaY_like paaY-lik 99.5 9.8E-14 2.1E-18 119.4 13.3 87 358-444 13-109 (155)
76 cd04182 GT_2_like_f GT_2_like_ 99.5 1.4E-13 3E-18 122.5 13.0 120 3-135 1-125 (186)
77 cd02516 CDP-ME_synthetase CDP- 99.5 5.1E-13 1.1E-17 122.1 16.6 122 4-134 2-129 (218)
78 COG0663 PaaY Carbonic anhydras 99.5 2.2E-13 4.7E-18 115.3 12.2 99 348-446 14-122 (176)
79 TIGR03310 matur_ygfJ molybdenu 99.5 2.1E-13 4.6E-18 121.5 12.9 120 5-136 2-125 (188)
80 cd04652 LbH_eIF2B_gamma_C eIF- 99.5 2.1E-13 4.5E-18 103.7 10.7 79 348-427 2-80 (81)
81 cd04646 LbH_Dynactin_6 Dynacti 99.5 3.3E-13 7.1E-18 116.9 13.1 101 344-444 16-132 (164)
82 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 3.8E-13 8.3E-18 125.4 13.5 101 344-444 28-169 (254)
83 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 5.9E-13 1.3E-17 124.2 14.7 106 340-445 6-134 (254)
84 PLN02296 carbonate dehydratase 99.5 4.3E-13 9.2E-18 124.4 13.5 95 350-444 57-167 (269)
85 cd03353 LbH_GlmU_C N-acetyl-gl 99.5 5E-13 1.1E-17 119.6 13.5 80 365-444 52-132 (193)
86 COG1044 LpxD UDP-3-O-[3-hydrox 99.5 4.9E-13 1.1E-17 124.1 13.2 105 340-444 124-255 (338)
87 COG2266 GTP:adenosylcobinamide 99.5 4.7E-13 1E-17 112.4 11.8 110 3-127 1-112 (177)
88 PRK13385 2-C-methyl-D-erythrit 99.5 3.9E-13 8.5E-18 123.8 12.5 128 1-135 1-132 (230)
89 TIGR01852 lipid_A_lpxA acyl-[a 99.5 7.3E-13 1.6E-17 123.5 14.0 85 345-429 28-134 (254)
90 cd02513 CMP-NeuAc_Synthase CMP 99.5 5.8E-13 1.3E-17 122.1 12.9 123 2-138 1-135 (223)
91 cd05824 LbH_M1P_guanylylT_C Ma 99.5 7.2E-13 1.6E-17 100.5 11.2 77 348-424 2-79 (80)
92 cd00710 LbH_gamma_CA Gamma car 99.5 1.4E-12 3E-17 113.6 14.3 103 344-446 19-131 (167)
93 cd03356 LbH_G1P_AT_C_like Left 99.5 5.9E-13 1.3E-17 100.8 10.5 76 366-441 2-78 (79)
94 PLN02728 2-C-methyl-D-erythrit 99.5 4.9E-13 1.1E-17 123.6 12.0 121 2-132 24-149 (252)
95 PLN02472 uncharacterized prote 99.5 9.6E-13 2.1E-17 120.4 13.7 96 349-444 63-174 (246)
96 cd04650 LbH_FBP Ferripyochelin 99.5 9.1E-13 2E-17 113.0 12.7 75 365-439 41-122 (154)
97 TIGR03202 pucB xanthine dehydr 99.5 7.2E-13 1.6E-17 118.3 12.5 123 3-134 1-129 (190)
98 cd02503 MobA MobA catalyzes th 99.5 3.5E-13 7.6E-18 119.4 10.4 112 3-133 1-115 (181)
99 PRK05289 UDP-N-acetylglucosami 99.4 1.5E-12 3.3E-17 121.6 14.4 78 345-422 32-131 (262)
100 TIGR01852 lipid_A_lpxA acyl-[a 99.4 2.1E-12 4.4E-17 120.5 15.2 105 341-445 6-133 (254)
101 cd03356 LbH_G1P_AT_C_like Left 99.4 9.9E-13 2.1E-17 99.5 10.7 78 347-425 1-79 (79)
102 TIGR03308 phn_thr-fam phosphon 99.4 1.6E-12 3.4E-17 116.5 13.7 98 349-447 6-142 (204)
103 cd05787 LbH_eIF2B_epsilon eIF- 99.4 8.7E-13 1.9E-17 99.8 10.2 76 366-441 2-78 (79)
104 cd00710 LbH_gamma_CA Gamma car 99.4 2.2E-12 4.8E-17 112.3 13.9 100 348-447 5-115 (167)
105 TIGR01853 lipid_A_lpxD UDP-3-O 99.4 1.2E-12 2.6E-17 125.6 13.4 50 346-395 122-172 (324)
106 PRK00317 mobA molybdopterin-gu 99.4 9.2E-13 2E-17 118.0 11.8 113 1-130 2-118 (193)
107 cd04646 LbH_Dynactin_6 Dynacti 99.4 2.3E-12 5E-17 111.6 13.7 99 348-446 2-116 (164)
108 TIGR01853 lipid_A_lpxD UDP-3-O 99.4 2.2E-12 4.8E-17 123.8 14.8 89 341-429 99-210 (324)
109 PRK02726 molybdopterin-guanine 99.4 9.4E-13 2E-17 118.3 11.5 112 1-128 6-120 (200)
110 KOG1461 Translation initiation 99.4 4.2E-13 9.2E-18 132.3 9.7 90 340-430 328-418 (673)
111 cd04745 LbH_paaY_like paaY-lik 99.4 2.8E-12 6.1E-17 110.3 13.6 98 344-441 17-124 (155)
112 cd03353 LbH_GlmU_C N-acetyl-gl 99.4 3.1E-12 6.6E-17 114.5 13.3 96 346-441 16-112 (193)
113 cd04645 LbH_gamma_CA_like Gamm 99.4 2.5E-12 5.4E-17 110.5 12.2 76 365-440 40-122 (153)
114 COG2068 Uncharacterized MobA-r 99.4 2.9E-12 6.3E-17 110.9 11.9 116 2-129 5-125 (199)
115 COG1044 LpxD UDP-3-O-[3-hydrox 99.4 3.1E-12 6.6E-17 118.9 12.8 10 210-219 56-65 (338)
116 cd04651 LbH_G1P_AT_C Glucose-1 99.4 2.5E-12 5.5E-17 102.5 10.8 78 352-431 2-79 (104)
117 PRK05289 UDP-N-acetylglucosami 99.4 2.9E-12 6.3E-17 119.7 12.5 83 364-446 81-174 (262)
118 PLN02296 carbonate dehydratase 99.4 7.8E-12 1.7E-16 116.0 15.2 98 344-441 69-182 (269)
119 PRK09382 ispDF bifunctional 2- 99.4 2.4E-12 5.2E-17 125.7 12.1 119 1-130 4-125 (378)
120 COG1212 KdsB CMP-2-keto-3-deox 99.4 8.8E-12 1.9E-16 108.5 14.1 187 1-228 2-195 (247)
121 PRK00892 lpxD UDP-3-O-[3-hydro 99.4 3E-12 6.5E-17 124.7 12.6 15 207-221 52-66 (343)
122 TIGR02665 molyb_mobA molybdopt 99.4 2.2E-12 4.7E-17 114.8 10.7 116 3-133 1-120 (186)
123 PRK12461 UDP-N-acetylglucosami 99.4 6.8E-12 1.5E-16 116.2 14.3 109 340-448 24-172 (255)
124 PRK00892 lpxD UDP-3-O-[3-hydro 99.4 8.2E-12 1.8E-16 121.6 15.3 77 368-444 153-256 (343)
125 TIGR02287 PaaY phenylacetic ac 99.4 5.9E-12 1.3E-16 111.3 12.9 98 344-441 25-132 (192)
126 cd04651 LbH_G1P_AT_C Glucose-1 99.4 3.7E-12 8E-17 101.6 10.5 79 370-449 2-80 (104)
127 PRK12461 UDP-N-acetylglucosami 99.4 7.2E-12 1.6E-16 116.0 13.8 100 344-443 10-131 (255)
128 cd04650 LbH_FBP Ferripyochelin 99.4 1.4E-11 2.9E-16 105.7 14.4 97 349-445 4-110 (154)
129 KOG1462 Translation initiation 99.4 1.8E-12 3.9E-17 120.9 9.1 97 340-437 329-425 (433)
130 TIGR01173 glmU UDP-N-acetylglu 99.4 3.5E-12 7.5E-17 129.7 11.4 100 344-444 278-403 (451)
131 TIGR00965 dapD 2,3,4,5-tetrahy 99.4 9.1E-12 2E-16 113.7 12.7 100 345-445 112-236 (269)
132 cd03358 LbH_WxcM_N_like WcxM-l 99.4 8E-12 1.7E-16 102.6 11.3 96 349-445 2-99 (119)
133 PRK14353 glmU bifunctional N-a 99.4 7.8E-12 1.7E-16 126.9 13.6 85 363-447 303-414 (446)
134 PF01128 IspD: 2-C-methyl-D-er 99.4 4.9E-12 1.1E-16 114.1 10.7 119 3-133 1-125 (221)
135 PLN02472 uncharacterized prote 99.3 1.2E-11 2.6E-16 113.2 13.2 97 345-441 77-189 (246)
136 PRK14356 glmU bifunctional N-a 99.3 4.9E-12 1.1E-16 128.7 10.9 83 345-428 287-387 (456)
137 cd05824 LbH_M1P_guanylylT_C Ma 99.3 1.7E-11 3.8E-16 92.8 11.1 75 362-441 4-79 (80)
138 cd03350 LbH_THP_succinylT 2,3, 99.3 3.5E-11 7.5E-16 101.5 13.8 95 343-437 11-117 (139)
139 cd04645 LbH_gamma_CA_like Gamm 99.3 3E-11 6.6E-16 103.7 13.6 97 349-445 3-109 (153)
140 cd05635 LbH_unknown Uncharacte 99.3 2.7E-11 5.8E-16 95.7 11.9 86 344-431 10-96 (101)
141 PRK13627 carnitine operon prot 99.3 2.8E-11 6E-16 107.5 13.3 97 345-441 28-134 (196)
142 cd05787 LbH_eIF2B_epsilon eIF- 99.3 1.9E-11 4E-16 92.5 10.3 76 348-424 2-78 (79)
143 PRK09451 glmU bifunctional N-a 99.3 9.2E-12 2E-16 126.6 10.9 100 344-444 282-407 (456)
144 cd03352 LbH_LpxD UDP-3-O-acyl- 99.3 6.2E-11 1.3E-15 107.2 14.8 33 414-446 150-183 (205)
145 COG1211 IspD 4-diphosphocytidy 99.3 2.2E-11 4.7E-16 109.2 11.5 124 1-133 3-132 (230)
146 PRK14358 glmU bifunctional N-a 99.3 1.3E-11 2.8E-16 125.9 11.1 104 340-444 283-412 (481)
147 PRK11830 dapD 2,3,4,5-tetrahyd 99.3 3.2E-11 6.9E-16 111.3 12.2 94 341-435 111-216 (272)
148 cd03359 LbH_Dynactin_5 Dynacti 99.3 6.5E-11 1.4E-15 102.4 13.5 96 347-442 23-136 (161)
149 cd03350 LbH_THP_succinylT 2,3, 99.3 7.4E-11 1.6E-15 99.5 13.4 30 415-444 76-106 (139)
150 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.3 3.2E-11 6.9E-16 110.0 11.7 101 340-441 93-204 (231)
151 PRK14359 glmU bifunctional N-a 99.3 2.7E-11 5.9E-16 122.4 12.3 60 369-428 282-356 (430)
152 PRK14360 glmU bifunctional N-a 99.3 1.2E-11 2.5E-16 125.8 9.4 99 345-443 262-377 (450)
153 cd05635 LbH_unknown Uncharacte 99.3 9.6E-11 2.1E-15 92.6 12.4 86 362-449 10-97 (101)
154 TIGR00965 dapD 2,3,4,5-tetrahy 99.3 4.4E-11 9.6E-16 109.2 11.8 96 347-442 102-214 (269)
155 COG0663 PaaY Carbonic anhydras 99.3 6.1E-11 1.3E-15 100.5 11.7 95 345-439 29-133 (176)
156 TIGR03570 NeuD_NnaD sugar O-ac 99.3 1.3E-10 2.8E-15 104.6 14.4 15 398-412 154-168 (201)
157 COG0746 MobA Molybdopterin-gua 99.3 3.4E-11 7.4E-16 106.4 10.1 111 1-130 3-116 (192)
158 cd04649 LbH_THP_succinylT_puta 99.2 1.3E-10 2.9E-15 95.9 12.4 53 344-396 6-63 (147)
159 TIGR03584 PseF pseudaminic aci 99.2 2.4E-10 5.3E-15 104.2 15.4 119 5-139 2-133 (222)
160 PRK14489 putative bifunctional 99.2 6.9E-11 1.5E-15 116.0 12.0 119 2-135 5-127 (366)
161 cd03360 LbH_AT_putative Putati 99.2 2E-10 4.4E-15 102.8 14.0 29 348-376 93-121 (197)
162 PRK11830 dapD 2,3,4,5-tetrahyd 99.2 6.8E-11 1.5E-15 109.1 10.9 15 415-429 177-191 (272)
163 cd03359 LbH_Dynactin_5 Dynacti 99.2 1.9E-10 4.2E-15 99.5 13.1 82 363-444 21-120 (161)
164 PRK14355 glmU bifunctional N-a 99.2 7.8E-11 1.7E-15 119.9 11.9 87 342-429 283-387 (459)
165 PRK14357 glmU bifunctional N-a 99.2 5.3E-11 1.2E-15 120.8 10.6 105 341-445 251-372 (448)
166 COG1043 LpxA Acyl-[acyl carrie 99.2 9.3E-11 2E-15 103.0 10.4 101 343-443 7-136 (260)
167 cd03352 LbH_LpxD UDP-3-O-acyl- 99.2 3E-10 6.6E-15 102.6 14.2 49 381-429 93-147 (205)
168 TIGR03570 NeuD_NnaD sugar O-ac 99.2 2.8E-10 6.1E-15 102.4 13.9 64 382-445 119-185 (201)
169 cd03360 LbH_AT_putative Putati 99.2 3.3E-10 7.1E-15 101.4 13.8 67 346-412 97-165 (197)
170 PRK14354 glmU bifunctional N-a 99.2 1.3E-10 2.7E-15 118.5 11.3 67 363-429 316-383 (458)
171 PRK14352 glmU bifunctional N-a 99.2 2.3E-10 5.1E-15 117.0 12.9 100 345-444 322-430 (482)
172 PRK00560 molybdopterin-guanine 99.2 1.8E-10 3.8E-15 103.2 10.6 101 1-122 7-112 (196)
173 COG1208 GCD1 Nucleoside-diphos 99.2 2.5E-10 5.4E-15 111.5 11.9 91 358-448 256-353 (358)
174 PRK14490 putative bifunctional 99.1 2E-10 4.2E-15 113.1 10.9 107 2-125 174-283 (369)
175 cd04649 LbH_THP_succinylT_puta 99.1 6.8E-10 1.5E-14 91.6 11.6 28 415-443 74-101 (147)
176 COG1207 GlmU N-acetylglucosami 99.1 1.7E-10 3.7E-15 109.8 9.1 102 345-446 320-430 (460)
177 cd02518 GT2_SpsF SpsF is a gly 99.1 4.6E-10 1E-14 103.6 11.8 117 5-134 2-121 (233)
178 PRK05293 glgC glucose-1-phosph 99.1 3.7E-10 8.1E-15 112.1 11.6 67 363-429 308-379 (380)
179 TIGR03308 phn_thr-fam phosphon 99.1 1.1E-09 2.5E-14 98.0 13.0 51 345-396 19-69 (204)
180 PRK14500 putative bifunctional 99.1 5.3E-10 1.1E-14 107.9 11.5 108 3-127 161-271 (346)
181 cd03358 LbH_WxcM_N_like WcxM-l 99.1 8.3E-10 1.8E-14 90.5 10.8 95 345-441 16-111 (119)
182 TIGR02092 glgD glucose-1-phosp 99.0 1.3E-09 2.9E-14 107.7 11.0 80 368-449 277-356 (369)
183 TIGR03536 DapD_gpp 2,3,4,5-tet 99.0 2.8E-09 6.1E-14 98.2 12.1 92 347-445 186-286 (341)
184 TIGR02091 glgC glucose-1-phosp 99.0 1.7E-09 3.8E-14 106.6 11.1 83 365-448 279-361 (361)
185 PLN02694 serine O-acetyltransf 99.0 1.8E-09 4E-14 99.7 9.4 92 345-440 160-255 (294)
186 COG1043 LpxA Acyl-[acyl carrie 99.0 3.3E-09 7.1E-14 93.4 10.4 119 331-449 19-178 (260)
187 TIGR01172 cysE serine O-acetyl 99.0 2.7E-09 5.9E-14 92.2 9.7 91 345-441 61-157 (162)
188 TIGR03536 DapD_gpp 2,3,4,5-tet 99.0 4.4E-09 9.6E-14 97.0 11.2 95 345-445 178-280 (341)
189 PRK10502 putative acyl transfe 99.0 4E-09 8.7E-14 93.0 10.6 93 347-440 53-167 (182)
190 PRK10191 putative acyl transfe 99.0 5.5E-09 1.2E-13 87.9 10.5 92 348-444 44-140 (146)
191 PRK10092 maltose O-acetyltrans 99.0 8.3E-09 1.8E-13 90.7 12.0 93 345-441 59-173 (183)
192 PRK09527 lacA galactoside O-ac 99.0 9.7E-09 2.1E-13 91.4 12.5 92 344-440 60-174 (203)
193 TIGR03535 DapD_actino 2,3,4,5- 99.0 6.9E-09 1.5E-13 95.2 11.7 14 432-445 248-261 (319)
194 PRK11132 cysE serine acetyltra 99.0 4.3E-09 9.3E-14 97.3 10.5 91 345-441 141-237 (273)
195 PRK10502 putative acyl transfe 99.0 7.4E-09 1.6E-13 91.4 11.5 66 380-445 71-156 (182)
196 TIGR03535 DapD_actino 2,3,4,5- 98.9 8.4E-09 1.8E-13 94.7 11.3 32 398-430 226-257 (319)
197 PLN02357 serine acetyltransfer 98.9 6.9E-09 1.5E-13 98.6 10.8 84 345-431 226-313 (360)
198 PLN02241 glucose-1-phosphate a 98.9 6.8E-09 1.5E-13 104.7 11.4 97 346-444 316-434 (436)
199 COG2171 DapD Tetrahydrodipicol 98.9 7E-09 1.5E-13 93.2 9.9 86 345-430 120-216 (271)
200 PRK02862 glgC glucose-1-phosph 98.9 5.4E-09 1.2E-13 105.1 10.2 99 345-445 308-428 (429)
201 PRK09677 putative lipopolysacc 98.9 2.1E-08 4.6E-13 89.2 12.5 93 347-440 45-173 (192)
202 TIGR01208 rmlA_long glucose-1- 98.9 9.9E-09 2.1E-13 100.9 11.1 83 365-447 250-338 (353)
203 cd03357 LbH_MAT_GAT Maltose O- 98.9 1.9E-08 4E-13 87.8 11.6 78 363-441 62-162 (169)
204 cd03354 LbH_SAT Serine acetylt 98.9 2E-08 4.4E-13 79.6 10.5 80 347-431 4-89 (101)
205 PRK10191 putative acyl transfe 98.9 2.1E-08 4.5E-13 84.4 10.5 85 345-429 47-142 (146)
206 cd04647 LbH_MAT_like Maltose O 98.9 2.7E-08 5.9E-13 80.1 10.9 94 347-441 3-102 (109)
207 PRK00844 glgC glucose-1-phosph 98.9 1.2E-08 2.7E-13 102.0 10.8 71 377-448 312-382 (407)
208 PRK11132 cysE serine acetyltra 98.8 1.3E-08 2.9E-13 94.0 9.7 11 382-392 163-173 (273)
209 PRK00725 glgC glucose-1-phosph 98.8 1.1E-08 2.4E-13 102.7 9.8 69 377-446 324-392 (425)
210 cd00208 LbetaH Left-handed par 98.8 2.8E-08 6.1E-13 74.5 9.7 33 366-398 3-36 (78)
211 cd04180 UGPase_euk_like Eukary 98.8 4.4E-09 9.5E-14 98.2 5.8 64 4-73 2-76 (266)
212 PLN02739 serine acetyltransfer 98.8 1.8E-08 3.8E-13 95.0 9.7 90 345-440 205-300 (355)
213 COG0448 GlgC ADP-glucose pyrop 98.8 1.6E-08 3.4E-13 96.4 9.3 82 366-449 282-363 (393)
214 PRK09677 putative lipopolysacc 98.8 5.4E-08 1.2E-12 86.6 11.8 90 357-447 43-164 (192)
215 KOG1322 GDP-mannose pyrophosph 98.8 3.3E-09 7.1E-14 97.6 4.0 94 351-444 252-347 (371)
216 COG2171 DapD Tetrahydrodipicol 98.8 1.8E-08 3.9E-13 90.6 8.5 93 352-444 109-213 (271)
217 PLN02694 serine O-acetyltransf 98.8 2.1E-08 4.6E-13 92.7 8.9 74 342-415 163-248 (294)
218 cd00208 LbetaH Left-handed par 98.8 4.8E-08 1E-12 73.3 9.3 33 348-380 3-35 (78)
219 PLN02357 serine acetyltransfer 98.8 3.9E-08 8.5E-13 93.5 10.4 90 341-430 228-329 (360)
220 PRK09527 lacA galactoside O-ac 98.8 6.1E-08 1.3E-12 86.4 11.0 36 344-379 74-111 (203)
221 cd03354 LbH_SAT Serine acetylt 98.8 6.6E-08 1.4E-12 76.7 10.1 59 381-444 23-85 (101)
222 KOG1460 GDP-mannose pyrophosph 98.8 2.4E-08 5.2E-13 90.4 8.3 70 360-429 285-355 (407)
223 cd04647 LbH_MAT_like Maltose O 98.8 6.5E-08 1.4E-12 77.8 9.9 64 381-444 22-89 (109)
224 cd05825 LbH_wcaF_like wcaF-lik 98.8 9.6E-08 2.1E-12 76.6 10.6 35 397-431 56-91 (107)
225 COG1045 CysE Serine acetyltran 98.7 6.5E-08 1.4E-12 83.2 8.8 82 345-431 67-154 (194)
226 TIGR01172 cysE serine O-acetyl 98.7 9.8E-08 2.1E-12 82.5 9.7 15 382-396 89-103 (162)
227 KOG3121 Dynactin, subunit p25 98.7 6.8E-08 1.5E-12 77.6 7.1 65 363-427 54-132 (184)
228 cd04193 UDPGlcNAc_PPase UDPGlc 98.7 2.6E-06 5.6E-11 81.8 19.2 133 2-139 15-194 (323)
229 cd05825 LbH_wcaF_like wcaF-lik 98.6 3.4E-07 7.4E-12 73.4 10.7 16 381-396 24-39 (107)
230 PLN02739 serine acetyltransfer 98.6 1.9E-07 4.2E-12 88.1 10.0 74 342-415 208-293 (355)
231 cd03357 LbH_MAT_GAT Maltose O- 98.6 2.5E-07 5.3E-12 80.8 10.1 69 346-414 63-153 (169)
232 PF02348 CTP_transf_3: Cytidyl 98.6 3.5E-07 7.5E-12 83.4 10.9 114 5-132 2-120 (217)
233 PRK10092 maltose O-acetyltrans 98.6 4.1E-07 8.9E-12 80.0 10.5 85 344-430 72-173 (183)
234 COG1083 NeuA CMP-N-acetylneura 98.6 5.8E-07 1.3E-11 78.2 10.9 123 1-139 2-135 (228)
235 KOG3121 Dynactin, subunit p25 98.5 1.7E-07 3.7E-12 75.3 5.4 82 362-445 38-139 (184)
236 PTZ00339 UDP-N-acetylglucosami 98.5 1.5E-05 3.4E-10 79.9 19.9 131 2-137 106-287 (482)
237 COG1861 SpsF Spore coat polysa 98.5 1.2E-06 2.5E-11 76.7 10.0 120 1-133 1-124 (241)
238 COG1045 CysE Serine acetyltran 98.4 7.9E-07 1.7E-11 76.6 8.2 88 342-429 70-169 (194)
239 KOG4042 Dynactin subunit p27/W 98.4 2.1E-07 4.6E-12 75.4 3.6 52 346-397 9-64 (190)
240 cd03349 LbH_XAT Xenobiotic acy 98.3 5.3E-06 1.1E-10 70.1 9.6 46 395-441 71-117 (145)
241 cd03349 LbH_XAT Xenobiotic acy 98.3 8.4E-06 1.8E-10 68.9 10.2 31 414-444 73-104 (145)
242 KOG4042 Dynactin subunit p27/W 98.1 4.7E-06 1E-10 67.7 4.5 102 344-445 25-145 (190)
243 KOG4750 Serine O-acetyltransfe 98.0 1E-05 2.3E-10 70.6 6.1 81 345-430 148-234 (269)
244 TIGR02353 NRPS_term_dom non-ri 98.0 2.2E-05 4.7E-10 83.4 9.5 33 397-429 645-678 (695)
245 cd00897 UGPase_euk Eukaryotic 97.9 0.0015 3.3E-08 61.7 19.4 133 2-139 3-173 (300)
246 TIGR02353 NRPS_term_dom non-ri 97.9 6E-05 1.3E-09 80.1 10.1 64 381-444 617-688 (695)
247 COG0110 WbbJ Acetyltransferase 97.9 9.9E-05 2.1E-09 65.7 10.1 16 381-396 88-103 (190)
248 PRK00576 molybdopterin-guanine 97.9 4.9E-05 1.1E-09 66.9 7.9 94 23-129 2-103 (178)
249 KOG4750 Serine O-acetyltransfe 97.7 6E-05 1.3E-09 66.0 5.5 30 416-445 202-232 (269)
250 COG4801 Predicted acyltransfer 97.7 0.00014 3.1E-09 63.9 7.1 75 365-439 35-111 (277)
251 PLN02474 UTP--glucose-1-phosph 97.6 0.0094 2E-07 59.7 19.5 191 3-225 80-309 (469)
252 cd06424 UGGPase UGGPase cataly 97.6 0.0022 4.8E-08 60.9 14.3 131 4-139 2-180 (315)
253 COG0110 WbbJ Acetyltransferase 97.6 0.00044 9.6E-09 61.4 9.1 33 398-430 125-158 (190)
254 COG4801 Predicted acyltransfer 97.4 0.00082 1.8E-08 59.3 8.5 67 365-431 18-85 (277)
255 PLN02435 probable UDP-N-acetyl 97.4 0.0085 1.8E-07 60.4 16.8 131 3-138 117-298 (493)
256 PF14602 Hexapep_2: Hexapeptid 97.4 0.00022 4.7E-09 43.7 3.5 12 383-394 4-15 (34)
257 PF00132 Hexapep: Bacterial tr 97.4 0.00012 2.7E-09 45.6 2.5 31 382-412 3-34 (36)
258 PF14602 Hexapep_2: Hexapeptid 97.3 0.00029 6.2E-09 43.2 3.2 15 381-395 18-32 (34)
259 PF01704 UDPGP: UTP--glucose-1 97.2 0.013 2.9E-07 58.3 16.0 134 2-140 56-229 (420)
260 COG4284 UDP-glucose pyrophosph 97.0 0.035 7.6E-07 54.9 16.0 131 2-139 105-276 (472)
261 TIGR03552 F420_cofC 2-phospho- 96.9 0.0031 6.6E-08 56.3 7.6 84 34-127 30-117 (195)
262 PRK13412 fkp bifunctional fuco 96.9 0.0065 1.4E-07 65.9 10.6 90 105-225 154-246 (974)
263 PLN02830 UDP-sugar pyrophospho 96.5 0.059 1.3E-06 56.1 14.0 134 2-140 128-312 (615)
264 cd00761 Glyco_tranf_GTA_type G 95.8 0.15 3.3E-06 42.1 11.1 96 29-126 3-102 (156)
265 PF07959 Fucokinase: L-fucokin 95.6 0.036 7.9E-07 55.4 7.3 49 371-419 275-323 (414)
266 PF07959 Fucokinase: L-fucokin 95.4 0.034 7.4E-07 55.6 6.4 49 354-403 276-324 (414)
267 PF00535 Glycos_transf_2: Glyc 95.0 0.19 4.2E-06 42.4 9.3 109 28-138 3-115 (169)
268 cd04179 DPM_DPG-synthase_like 91.2 1.6 3.5E-05 37.8 9.1 104 29-136 3-114 (185)
269 cd04195 GT2_AmsE_like GT2_AmsE 91.0 2.9 6.2E-05 36.8 10.8 100 28-129 3-108 (201)
270 cd04186 GT_2_like_c Subfamily 90.7 3.5 7.6E-05 34.6 10.7 96 29-129 3-102 (166)
271 cd06439 CESA_like_1 CESA_like_ 88.6 6.9 0.00015 35.8 11.6 104 21-128 25-136 (251)
272 cd06423 CESA_like CESA_like is 88.5 4.5 9.8E-05 33.9 9.7 99 29-129 3-106 (180)
273 cd04188 DPG_synthase DPG_synth 88.2 3.5 7.7E-05 36.7 9.1 105 29-136 3-117 (211)
274 PRK10073 putative glycosyl tra 87.9 4 8.6E-05 39.6 9.8 102 29-135 12-119 (328)
275 cd06442 DPM1_like DPM1_like re 87.4 3.5 7.5E-05 37.0 8.6 101 29-133 3-110 (224)
276 cd02525 Succinoglycan_BP_ExoA 86.4 6 0.00013 35.9 9.8 102 29-133 6-113 (249)
277 KOG2388 UDP-N-acetylglucosamin 85.9 0.8 1.7E-05 45.5 3.6 39 3-45 98-139 (477)
278 cd04184 GT2_RfbC_Mx_like Myxoc 85.8 8.8 0.00019 33.6 10.3 97 35-132 15-115 (202)
279 cd06427 CESA_like_2 CESA_like_ 85.5 12 0.00025 34.3 11.2 105 29-136 7-119 (241)
280 cd02510 pp-GalNAc-T pp-GalNAc- 84.9 12 0.00026 35.5 11.3 102 29-132 4-114 (299)
281 PRK10018 putative glycosyl tra 84.4 17 0.00037 34.3 11.9 98 29-128 11-112 (279)
282 PRK11204 N-glycosyltransferase 83.9 7.1 0.00015 39.2 9.7 100 28-129 59-162 (420)
283 cd06433 GT_2_WfgS_like WfgS an 83.0 11 0.00023 32.7 9.5 96 29-129 4-103 (202)
284 cd04187 DPM1_like_bac Bacteria 81.6 11 0.00025 32.3 9.0 54 79-133 57-111 (181)
285 PLN02726 dolichyl-phosphate be 81.2 10 0.00023 34.6 9.0 105 29-135 15-127 (243)
286 KOG2978 Dolichol-phosphate man 80.6 33 0.00072 30.0 10.8 106 33-139 17-126 (238)
287 PRK13412 fkp bifunctional fuco 79.9 2.3 5.1E-05 46.8 4.6 62 376-437 332-395 (974)
288 cd04192 GT_2_like_e Subfamily 79.8 14 0.00031 32.9 9.3 101 29-131 3-112 (229)
289 cd06437 CESA_CaSu_A2 Cellulose 79.7 20 0.00043 32.4 10.2 97 29-125 7-111 (232)
290 cd04196 GT_2_like_d Subfamily 79.4 16 0.00034 32.2 9.4 98 28-128 3-106 (214)
291 PRK14583 hmsR N-glycosyltransf 79.3 12 0.00026 38.0 9.4 98 27-128 79-182 (444)
292 PF04519 Bactofilin: Polymer-f 78.8 3.3 7.1E-05 32.4 4.1 21 386-406 36-56 (101)
293 cd06434 GT2_HAS Hyaluronan syn 77.2 22 0.00047 32.0 9.8 89 35-127 14-103 (235)
294 TIGR03111 glyc2_xrt_Gpos1 puta 77.1 25 0.00054 35.6 10.9 98 28-129 54-159 (439)
295 PF01983 CofC: Guanylyl transf 76.8 2.8 6.1E-05 37.8 3.5 109 3-127 1-114 (217)
296 PRK10714 undecaprenyl phosphat 75.5 26 0.00056 33.9 10.1 55 79-134 67-122 (325)
297 cd06421 CESA_CelA_like CESA_Ce 75.1 41 0.00089 30.0 11.0 98 28-128 6-111 (234)
298 cd06435 CESA_NdvC_like NdvC_li 74.7 32 0.00069 31.0 10.2 97 28-127 3-110 (236)
299 PTZ00260 dolichyl-phosphate be 74.4 46 0.001 32.3 11.6 100 29-128 76-189 (333)
300 cd06438 EpsO_like EpsO protein 72.1 49 0.0011 28.5 10.4 96 28-128 2-108 (183)
301 TIGR01556 rhamnosyltran L-rham 70.9 34 0.00074 32.0 9.7 91 35-130 8-102 (281)
302 cd02522 GT_2_like_a GT_2_like_ 68.8 34 0.00073 30.3 8.8 94 29-131 5-102 (221)
303 COG1664 CcmA Integral membrane 66.1 22 0.00048 29.9 6.3 67 370-437 58-125 (146)
304 cd02511 Beta4Glucosyltransfera 65.9 62 0.0013 29.2 10.0 93 29-130 6-100 (229)
305 PF04519 Bactofilin: Polymer-f 65.4 19 0.00041 28.0 5.5 61 369-431 36-97 (101)
306 TIGR03469 HonB hopene-associat 65.3 77 0.0017 31.4 11.2 105 28-133 45-165 (384)
307 cd02526 GT2_RfbF_like RfbF is 64.8 53 0.0012 29.4 9.4 87 31-123 6-97 (237)
308 cd02520 Glucosylceramide_synth 64.8 63 0.0014 28.2 9.6 97 28-126 6-111 (196)
309 cd04185 GT_2_like_b Subfamily 64.2 43 0.00093 29.2 8.4 91 34-127 9-105 (202)
310 cd06420 GT2_Chondriotin_Pol_N 62.9 49 0.0011 28.1 8.4 96 29-126 3-104 (182)
311 COG1920 Predicted nucleotidylt 62.0 29 0.00062 30.5 6.2 106 3-127 1-112 (210)
312 PRK10063 putative glycosyl tra 57.6 1.6E+02 0.0034 27.1 11.7 90 34-127 13-107 (248)
313 cd06913 beta3GnTL1_like Beta 1 57.4 1.4E+02 0.003 26.4 11.7 101 29-131 3-114 (219)
314 cd06436 GlcNAc-1-P_transferase 57.4 86 0.0019 27.2 9.1 95 29-126 3-114 (191)
315 PF07302 AroM: AroM protein; 55.7 1.1E+02 0.0024 27.8 9.2 97 5-114 91-189 (221)
316 TIGR03472 HpnI hopanoid biosyn 54.9 72 0.0016 31.4 8.9 101 28-130 46-155 (373)
317 COG1664 CcmA Integral membrane 54.9 45 0.00097 28.1 6.2 51 378-429 48-99 (146)
318 PRK11498 bcsA cellulose syntha 53.3 1.4E+02 0.0029 33.2 11.1 95 28-129 265-367 (852)
319 PF13641 Glyco_tranf_2_3: Glyc 50.9 16 0.00036 32.7 3.4 103 28-132 6-117 (228)
320 COG1215 Glycosyltransferases, 50.1 1.1E+02 0.0024 30.5 9.6 102 28-131 59-167 (439)
321 PF10111 Glyco_tranf_2_2: Glyc 49.4 1.4E+02 0.003 28.0 9.6 37 88-124 74-111 (281)
322 COG1581 Ssh10b Archaeal DNA-bi 49.3 79 0.0017 23.8 5.9 51 26-76 4-58 (91)
323 TIGR03030 CelA cellulose synth 46.7 2.1E+02 0.0045 31.1 11.4 96 28-128 136-255 (713)
324 COG1216 Predicted glycosyltran 44.1 1E+02 0.0022 29.3 7.9 106 29-137 10-120 (305)
325 PRK13915 putative glucosyl-3-p 39.8 2.4E+02 0.0052 26.9 9.6 106 29-136 37-152 (306)
326 cd04191 Glucan_BSP_ModH Glucan 38.4 3.2E+02 0.007 25.2 11.7 100 28-128 4-122 (254)
327 PF13712 Glyco_tranf_2_5: Glyc 33.2 1.9E+02 0.0042 26.0 7.4 77 52-128 3-82 (217)
328 TIGR00285 DNA-binding protein 32.3 1E+02 0.0022 23.4 4.4 33 29-61 4-38 (87)
329 KOG2638 UDP-glucose pyrophosph 31.8 2.1E+02 0.0045 28.5 7.5 129 3-135 104-270 (498)
330 PF05060 MGAT2: N-acetylglucos 30.1 93 0.002 30.4 4.9 56 15-71 24-81 (356)
331 PF13704 Glyco_tranf_2_4: Glyc 29.9 2.4E+02 0.0052 21.1 7.1 73 34-112 4-81 (97)
332 COG0381 WecB UDP-N-acetylgluco 26.1 2.2E+02 0.0048 28.1 6.7 76 40-116 22-105 (383)
333 PF13562 NTP_transf_4: Sugar n 26.0 2.1E+02 0.0046 24.3 6.0 47 6-56 3-49 (156)
334 PF09837 DUF2064: Uncharacteri 25.6 2E+02 0.0044 23.2 5.6 84 40-129 1-88 (122)
335 KOG2638 UDP-glucose pyrophosph 25.1 97 0.0021 30.7 4.0 18 113-130 161-178 (498)
336 TIGR03455 HisG_C-term ATP phos 21.2 1.6E+02 0.0035 22.9 4.0 48 7-55 47-94 (100)
No 1
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-58 Score=423.66 Aligned_cols=410 Identities=31% Similarity=0.516 Sum_probs=315.5
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeE
Q 013012 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (451)
Q Consensus 1 m~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (451)
|+|||||+|||.|+||--+ +...||+||||+|+|||+|+|++|.++|+++++|++...+ .+.+++++.+.+.-+....
T Consensus 8 ~efqavV~a~~ggt~~p~~-~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e-~~~i~~al~~~~~l~~~~~ 85 (433)
T KOG1462|consen 8 SEFQAVVLAGGGGTRMPEV-TSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDE-KLDIESALGSNIDLKKRPD 85 (433)
T ss_pred HHhhhheeecCCceechhh-hhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHH-HHHHHHHHhcCCccccccc
Confidence 4689999999999999666 8899999999999999999999999999999999998433 4578888866443232222
Q ss_pred EEEcC----CCCChHHHHHHHHhcCCCCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCccc
Q 013012 81 VATVP----EDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (451)
Q Consensus 81 i~~~~----~~~gt~~~l~~~~~~l~~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 156 (451)
++..+ +..||+++|+.....++.+||+|++||++++.++..+++++|..++.+.+++.... ++...++.+.+
T Consensus 86 ~v~ip~~~~~d~gtadsLr~Iy~kikS~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~----s~~~~pgqk~k 161 (433)
T KOG1462|consen 86 YVEIPTDDNSDFGTADSLRYIYSKIKSEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNAL----SEVPIPGQKGK 161 (433)
T ss_pred EEEeecccccccCCHHHHhhhhhhhccCCEEEEecccccCCCcHHHHHHHhccChhHhHHhcccc----ccccccCcccc
Confidence 33222 24799999999999998779999999999999999999999988877666555221 11111122222
Q ss_pred CCCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCccccccccc
Q 013012 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQD 236 (451)
Q Consensus 157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~~~s~~~d 236 (451)
++....++..+++++++.+.....+.++++.++++++++||++++.++|.|+|+|+|+.|+++. +.+.++..|++-+
T Consensus 162 --~k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~-l~~~~sisSfk~~ 238 (433)
T KOG1462|consen 162 --KKQARDVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDL-LSEKESISSFKAD 238 (433)
T ss_pred --cccccceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHH-HhcCCcceeeccc
Confidence 2234578999999998888887778899999999999999999999999999999999999974 5777788999999
Q ss_pred hhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEEEeccchhhhhc
Q 013012 237 VLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRL 316 (451)
Q Consensus 237 ~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 316 (451)
|+|+|+++|++......... +--...+.+.+ . .+........+|++|..+....+.|+
T Consensus 239 f~P~lvkkQ~q~~~~~~~~~---------~~~l~t~~~~~-------~------d~~~~~~d~ik~y~~~~p~e~~~~ra 296 (433)
T KOG1462|consen 239 FLPYLVKKQFQKNPPLKKNE---------TSILPTPNLNN-------P------DGIHSPDDRIKCYAYILPTESLFVRA 296 (433)
T ss_pred ccchhhhhhhhcCCCccccc---------ccccCCccccC-------c------ccccCcccceeeeEEEccCccceEEe
Confidence 99999999986543321100 00000001100 0 01000012478999999998888999
Q ss_pred cCHHHHHHHchhc-cccccccCCccccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEE
Q 013012 317 NSIQAFMDINRDV-IGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKV 395 (451)
Q Consensus 317 ~~~~~y~~~~~~~-l~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i 395 (451)
+++..|+++|++- +..... . ...+...+.. .+.+|.+++++++|.|++++.|+.|+||.+|.||+.++|
T Consensus 297 NtL~~y~eiN~~k~~~~l~~---e-----~~~~k~~~~~--~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v 366 (433)
T KOG1462|consen 297 NTLLSYMEINRDKKLKKLCS---E-----AKFVKNYVKK--VALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKV 366 (433)
T ss_pred cchHHHHhhhHHHHHHHhcc---c-----cccccchhhh--eeccchhhccCCCceecccceeeeeeecCCccccCCcEE
Confidence 9999999999632 111110 0 0001111111 145678899999999999999999999999999999999
Q ss_pred eceEECCCCEECCCcEEeCeEECCCCEECCCcEEcceEECCCCEECCCCccCCCcC
Q 013012 396 VNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVLSLSTSVFLSLSSNEYL 451 (451)
Q Consensus 396 ~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~~~ 451 (451)
.+|+||+||+||+|+.|++||||.+|+||+|+.+.+|.||+|.+|+++.+..++.+
T Consensus 367 ~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig~~yvVeak~~~~~ev~ 422 (433)
T KOG1462|consen 367 ANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIGPGYVVEAKGKHGGEVL 422 (433)
T ss_pred EeeEeecCcEecCCcceecceecccceecCCCeeeeeEecCCcEEcccccccccEe
Confidence 99999999999999999999999999999999999999999999999988887753
No 2
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-49 Score=382.77 Aligned_cols=343 Identities=22% Similarity=0.400 Sum_probs=260.1
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEE
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i 81 (451)
.|+|||||||.||||+|| |...||||+||+|||||+|+|++|.++|++++++.+++. .+++++|+.+.+....++.+
T Consensus 1 ~mkavILagG~GtRLrPl-T~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~--~~~i~~~~~d~~~~~~~I~y 77 (358)
T COG1208 1 PMKAVILAGGYGTRLRPL-TDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYL--GEQIEEYFGDGEGLGVRITY 77 (358)
T ss_pred CceEEEEeCCcccccccc-ccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccc--hHHHHHHHhcccccCCceEE
Confidence 489999999999999999 999999999999999999999999999999999999876 45888888775333456788
Q ss_pred EEcCCCCChHHHHHHHHhcCCCCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccCCCCC
Q 013012 82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG 161 (451)
Q Consensus 82 ~~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (451)
+.+..+.||+++|+.+.+.+..++|++++||.+++.++..++++|+++.+.+++...... .+.
T Consensus 78 ~~e~~~lGTag~l~~a~~~l~~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~-----------------~~~ 140 (358)
T COG1208 78 VVEKEPLGTAGALKNALDLLGGDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL-----------------DPS 140 (358)
T ss_pred EecCCcCccHHHHHHHHHhcCCCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC-----------------CCC
Confidence 877888999999999999997789999999999999999999999999777777766543 134
Q ss_pred cccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCccccccccchhhHH
Q 013012 162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYL 241 (451)
Q Consensus 162 ~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~~~s~~~d~lp~l 241 (451)
.||++..++++..+..+. ||+.. ....++++++|+|+|++++|+.+ +. ....++..+++|.+
T Consensus 141 ~~Gvv~~~~~~~~v~~f~-----ekp~~-----------~~~~~~~in~Giyi~~~~v~~~i-~~-~~~~~~~~~~~~~l 202 (358)
T COG1208 141 EFGVVETDDGDGRVVEFR-----EKPGP-----------EEPPSNLINAGIYIFDPEVFDYI-EK-GERFDFEEELLPAL 202 (358)
T ss_pred cCceEEecCCCceEEEEE-----ecCCC-----------CCCCCceEEeEEEEECHHHhhhc-cc-CCcccchhhHHHHH
Confidence 688888885544555665 34310 02346899999999999999833 32 23456667899998
Q ss_pred HHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEEEeccchhhhhccCHHH
Q 013012 242 VRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQA 321 (451)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 321 (451)
++.+. ..+.| ...+||.+++++++
T Consensus 203 ~~~~~------------------------------------------------------~v~~~--~~~g~W~dig~p~d 226 (358)
T COG1208 203 AAKGE------------------------------------------------------DVYGY--VFEGYWLDIGTPED 226 (358)
T ss_pred HhCCC------------------------------------------------------cEEEE--EeCCeEEeCCCHHH
Confidence 87541 12334 34669999999999
Q ss_pred HHHHchhccccccccC--Cc---------cccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEEC
Q 013012 322 FMDINRDVIGEANHLS--GY---------NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIG 390 (451)
Q Consensus 322 y~~~~~~~l~~~~~~~--~~---------~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig 390 (451)
|.+++..++....... .. ..+.+++++++++.|++++.|+++++||++|.|++++.|++|+|+++|.|+
T Consensus 227 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~ 306 (358)
T COG1208 227 LLEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIG 306 (358)
T ss_pred HHHHHHHHHhcccccccccccccccccccceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEEC
Confidence 9999998875321110 00 334567777777777777777777888888888888888888888888888
Q ss_pred CCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEEc-ceEECCCCEECCCC
Q 013012 391 SNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVLSLSTSVFLS 444 (451)
Q Consensus 391 ~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~ 444 (451)
++++|.+|+|+++|+||.++ . +++ +.++.++.+. +.++++++++.++.
T Consensus 307 ~~~~i~~sIi~~~~~ig~~~-~----i~d-~~~g~~~~i~~g~~~~~~~~~~~~~ 355 (358)
T COG1208 307 HGSYIGDSIIGENCKIGASL-I----IGD-VVIGINSEILPGVVVGPGSVVESGE 355 (358)
T ss_pred CCCEEeeeEEcCCcEECCce-e----ecc-eEecCceEEcCceEeCCCccccCcc
Confidence 88888888888888888722 1 555 6666555555 35555555555443
No 3
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.1e-49 Score=359.29 Aligned_cols=331 Identities=21% Similarity=0.367 Sum_probs=257.8
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEE
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i 81 (451)
.|+|+||.||.||||+|| |.++|||++|++|+|||+|++++|.++|+++|++++++.. +.+..++.+.|..++++++
T Consensus 9 ~vkaiILvGG~GTRLrPL-T~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s--~sl~~~~~k~y~~~lgVei 85 (371)
T KOG1322|consen 9 SVKAIILVGGYGTRLRPL-TLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNS--ESLNRHLSKAYGKELGVEI 85 (371)
T ss_pred ceeEEEEecCCCceeece-eccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCc--HHHHHHHHHHhhhccceEE
Confidence 478999999999999999 9999999999999999999999999999999999999774 3233334444444566666
Q ss_pred EE--cCCCCChHHHHHHHHhcCC---CCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCccc
Q 013012 82 AT--VPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (451)
Q Consensus 82 ~~--~~~~~gt~~~l~~~~~~l~---~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 156 (451)
.. +.++.||++.+..+++++- +.+|+|+++|.++++++.+|+++|++++++.|++++++.
T Consensus 86 ~~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vd--------------- 150 (371)
T KOG1322|consen 86 LASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVD--------------- 150 (371)
T ss_pred EEEeccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEecc---------------
Confidence 54 4556776666666666543 237999999999999999999999999999999998763
Q ss_pred CCCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCccccccccc
Q 013012 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQD 236 (451)
Q Consensus 157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~~~s~~~d 236 (451)
+++.||++..|+++..+.+|. ||+. .+.++-+|+|||+|++++|..++. ...|++++
T Consensus 151 --epSkyGvv~~d~~~grV~~F~-----EKPk-------------d~vsnkinaGiYi~~~~vL~ri~~---~ptSiekE 207 (371)
T KOG1322|consen 151 --EPSKYGVVVIDEDTGRVIRFV-----EKPK-------------DLVSNKINAGIYILNPEVLDRILL---RPTSIEKE 207 (371)
T ss_pred --CccccceEEEecCCCceeEeh-----hCch-------------hhhhccccceEEEECHHHHhHhhh---cccchhhh
Confidence 267899999999555566665 5543 335678899999999999998863 24568999
Q ss_pred hhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEEEeccchhhhhc
Q 013012 237 VLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRL 316 (451)
Q Consensus 237 ~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 316 (451)
++|.+++. .+.++|+ ..+||.|+
T Consensus 208 ifP~~a~~-------------------------------------------------------~~l~a~~--l~gfWmDI 230 (371)
T KOG1322|consen 208 IFPAMAEE-------------------------------------------------------HQLYAFD--LPGFWMDI 230 (371)
T ss_pred hhhhhhhc-------------------------------------------------------CceEEEe--cCchhhhc
Confidence 99977653 2344554 48999999
Q ss_pred cCHHHHHHHchhcccccccc-----CCccccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECC
Q 013012 317 NSIQAFMDINRDVIGEANHL-----SGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGS 391 (451)
Q Consensus 317 ~~~~~y~~~~~~~l~~~~~~-----~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~ 391 (451)
+++++|++....+++..+.. ...+-+..+..+++.+.+|.+|.|+++++||++|+|++++.|++|+|..+..++.
T Consensus 231 Gqpkdf~~g~~~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~ 310 (371)
T KOG1322|consen 231 GQPKDFLTGFSFYLRSLPKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYET 310 (371)
T ss_pred CCHHHHHHHHHHHHhhCcccCCccccCCccccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceech
Confidence 99999999977666543322 1122334577788888888888898889999999999888888888888888888
Q ss_pred CcEEeceEECCCCEECCCcEEe-CeEECCCCEECCCcEEc
Q 013012 392 NVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK 430 (451)
Q Consensus 392 ~~~i~~s~i~~~~~Ig~~~~i~-~~ii~~~~~i~~~~~i~ 430 (451)
.+.|..++++.++.||.|++|. +++||+++.|.+.-.+.
T Consensus 311 ~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~~vn 350 (371)
T KOG1322|consen 311 HSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADEDYVN 350 (371)
T ss_pred hHHHHhhhccccccccCceEEecccEeccceEEecccccc
Confidence 8888888888899999888774 45555555555444443
No 4
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-48 Score=377.23 Aligned_cols=370 Identities=27% Similarity=0.463 Sum_probs=303.1
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhh--hccCc-eee
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISA--AYVDR-LHV 79 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~--~~~~~-~~~ 79 (451)
+|||+||...-+||+|+ |..+|++|+|++|.|||+|+|++|.++|+.+++|+|+.+ ..++.+|+.+ |+... +.+
T Consensus 25 LqAIllaDsf~trF~Pl-t~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~--~~qi~e~i~~sew~~~~~~~v 101 (673)
T KOG1461|consen 25 LQAILLADSFETRFRPL-TLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAH--AAQIIEYIEKSEWYLPMSFIV 101 (673)
T ss_pred eEEEEEeccchhccccc-ccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEeccc--HHHHHHHHhhccccccccceE
Confidence 79999999999999999 999999999999999999999999999999999999866 4578888865 32211 122
Q ss_pred EEEEcCCCCChHHHHHHH-HhcCCCCcEEEEcCCccCCCCchHHHHHHHhc-----CceEEEEEeeeccCCCccCCCCCC
Q 013012 80 EVATVPEDVGTAGALRAI-AHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRH-----DAVVTAMICSVPVSGLSEAGSSGA 153 (451)
Q Consensus 80 ~i~~~~~~~gt~~~l~~~-~~~l~~~~~lvl~~D~i~~~~~~~~l~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~ 153 (451)
..+..++....++++|.. -+.+..++|++++||.+++.++++++++|+.+ ++.||+++.+...
T Consensus 102 ~ti~s~~~~S~GDamR~id~k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st----------- 170 (673)
T KOG1461|consen 102 VTICSGESRSVGDAMRDIDEKQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESST----------- 170 (673)
T ss_pred EEEcCCCcCcHHHHHHHHHhcceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEecccc-----------
Confidence 333334468899999998 44566799999999999999999999999653 5667877765420
Q ss_pred cccCCCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCcccccc
Q 013012 154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSL 233 (451)
Q Consensus 154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~~~s~ 233 (451)
.....-.++.+|+.+..++||++....+....++++++..++.+.++.+|.+++|-||++.++..| .++++|+ .
T Consensus 171 ----~~~~~~~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF-~dNFDyq-~ 244 (673)
T KOG1461|consen 171 ----RETTEQVVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLF-TDNFDYQ-T 244 (673)
T ss_pred ----ccCCcceEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHh-hhcccce-e
Confidence 001122578899988889998753222346778899999999999999999999999999999765 7788999 8
Q ss_pred ccchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEEEeccchhh
Q 013012 234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC 313 (451)
Q Consensus 234 ~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (451)
+.||+..++..... +.+++.++.+...|.
T Consensus 245 r~DfV~GvL~~dil---------------------------------------------------g~kI~~~~~~~~~yA 273 (673)
T KOG1461|consen 245 RDDFVRGVLVDDIL---------------------------------------------------GYKIHVHVLSSIDYA 273 (673)
T ss_pred hhhhhhhhhhhhhc---------------------------------------------------CCeEEEEEcChhhhh
Confidence 89999887753211 145677777777799
Q ss_pred hhccCHHHHHHHchhccccccc-------cCC---ccccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEE
Q 013012 314 VRLNSIQAFMDINRDVIGEANH-------LSG---YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVI 383 (451)
Q Consensus 314 ~~i~~~~~y~~~~~~~l~~~~~-------~~~---~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svi 383 (451)
.++.++++|.-++++++.+... +.+ +.+...+.|-++.+.+...+.++.+++||.++.||.++.|.||+|
T Consensus 274 ~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVI 353 (673)
T KOG1461|consen 274 ARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVI 353 (673)
T ss_pred hhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccccCccceehhhccccceEEecccccccCCCeeeccee
Confidence 9999999999999999876432 112 234455777888899999999999999999999999999999999
Q ss_pred CCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEEc-ceEECCCCEECCC
Q 013012 384 GRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVLSLSTSVFL 443 (451)
Q Consensus 384 g~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~ 443 (451)
|.||.||.+++|.+|+||.+|+||+||.|++|+||+++.|++++.+. +|++|.+++++++
T Consensus 354 G~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~ 414 (673)
T KOG1461|consen 354 GANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRN 414 (673)
T ss_pred cCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeeeeEeCCC
Confidence 99999999999999999999999999999999999999999999996 5777777777654
No 5
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-49 Score=368.68 Aligned_cols=334 Identities=24% Similarity=0.398 Sum_probs=270.1
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccCCc-chHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhc---cCce
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY---VDRL 77 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~---~~~~ 77 (451)
++-|+|||||.|+||.|| |..++||-+|++|| +||+++|.+|.++|+.+|.|++.++.+ .+.++++..+ +++.
T Consensus 5 ~~laiILaGg~G~rL~~L-T~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~--SL~~Hi~~G~~w~l~~~ 81 (393)
T COG0448 5 NVLAIILAGGRGSRLSPL-TKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSH--SLNDHIGRGWPWDLDRK 81 (393)
T ss_pred ceEEEEEcCCCCCccchh-hhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchh--HHHHHhhCCCccccccc
Confidence 367999999999999999 99999999999999 999999999999999999999998765 4556665532 2222
Q ss_pred --eeEEEEc----C---CCCChHHHHHHHHhcC---CCCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCC
Q 013012 78 --HVEVATV----P---EDVGTAGALRAIAHHL---TAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL 145 (451)
Q Consensus 78 --~~~i~~~----~---~~~gt~~~l~~~~~~l---~~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~ 145 (451)
.+.+... . ...||++++++-+..+ ..+.++++.||+++++|++.++++|.+.++++|+++.+++.++
T Consensus 82 ~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~e- 160 (393)
T COG0448 82 NGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREE- 160 (393)
T ss_pred cCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHh-
Confidence 2333321 1 2369999999865544 3567999999999999999999999999999999999987543
Q ss_pred ccCCCCCCcccCCCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecC-CccceEEeechHHHHHHH
Q 013012 146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRAD-LMDAHMYAFNRSVLQEVL 224 (451)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~-l~~~giYi~~~~~l~~~~ 224 (451)
.++||++.+|++++++.+. ||+.. ...++ |+++|||+|+.++|..++
T Consensus 161 --------------as~fGim~~D~~~~i~~F~------eKp~~------------~~~~~~laSMgiYIf~~~~L~~~L 208 (393)
T COG0448 161 --------------ASRFGVMNVDENGRIIEFV------EKPAD------------GPPSNSLASMGIYIFNTDLLKELL 208 (393)
T ss_pred --------------hhhcCceEECCCCCEEeee------eccCc------------CCcccceeeeeeEEEcHHHHHHHH
Confidence 5678999999999876543 44432 01223 899999999999998888
Q ss_pred hcC----ccccccccchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcc
Q 013012 225 DQK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTH 300 (451)
Q Consensus 225 ~~~----~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (451)
++. .+..++.+|++|.+++.+
T Consensus 209 ~~~~~~~~~~~DfgkdiIp~~~~~~------------------------------------------------------- 233 (393)
T COG0448 209 EEDAKDPNSSHDFGKDIIPKLLERG------------------------------------------------------- 233 (393)
T ss_pred HHHhcccCccccchHHHHHHHHhcC-------------------------------------------------------
Confidence 642 345788899999987653
Q ss_pred eeEEEEeccchhhhhccCHHHHHHHchhccccccccCC----ccccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCC
Q 013012 301 KCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSG----YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKC 376 (451)
Q Consensus 301 ~~~~~~~~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~~----~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~ 376 (451)
..++| ++.+||.+++|+++|+++|++++.+.+.+.. +++.+. ....|++.+..++.+ .++.|++||.|..
T Consensus 234 ~v~AY--~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~-~~~~pPak~~~~s~v-~nSLv~~GciI~G-- 307 (393)
T COG0448 234 KVYAY--EFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTK-NKNLPPAKFVNDSEV-SNSLVAGGCIISG-- 307 (393)
T ss_pred CEEEE--eccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeec-CCCCCCceEecCceE-eeeeeeCCeEEEe--
Confidence 23455 5688999999999999999999986554432 223322 224577777777776 7899999999987
Q ss_pred EEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEEcce
Q 013012 377 SVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDC 432 (451)
Q Consensus 377 ~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~~ 432 (451)
.|.+|+|+.++.|+.+|.|.+|+||++|.||+||.|.++||+++|.|++|++|++.
T Consensus 308 ~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 308 TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence 89999999999999999999999999999999999999999999999999999853
No 6
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=9.5e-48 Score=380.93 Aligned_cols=349 Identities=21% Similarity=0.316 Sum_probs=265.7
Q ss_pred CC-ceEEEEecCCCCCCCCCCCCCCcccccccCCc-chHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhcc---C
Q 013012 1 MD-FQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV---D 75 (451)
Q Consensus 1 m~-~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~---~ 75 (451)
|+ |+|||||||.|+||+|| |...||||+|++|+ |||+|+|++|.++|+++++|+++++ .+.+.+|+.+... .
T Consensus 1 ~~~m~avILAaG~GtRl~pl-T~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~ 77 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKL-TKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQ--PLELNNHIGIGSPWDLD 77 (380)
T ss_pred CCcEEEEEECCCCCcccchh-hcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCC--HHHHHHHHhCCCccccc
Confidence 54 99999999999999999 89999999999999 9999999999999999999999875 4577777753211 1
Q ss_pred c--eeeEEE----EcCC---CCChHHHHHHHHhcCC---CCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccC
Q 013012 76 R--LHVEVA----TVPE---DVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVS 143 (451)
Q Consensus 76 ~--~~~~i~----~~~~---~~gt~~~l~~~~~~l~---~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~ 143 (451)
. .++.+. .+.+ ..||+++++.+++++. +++|+|++||.+++.++.++++.|++.++++|+++...+.+
T Consensus 78 ~~~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~ 157 (380)
T PRK05293 78 RINGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWE 157 (380)
T ss_pred CCCCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchh
Confidence 0 112332 2222 3899999999988875 35799999999999999999999998888888877654322
Q ss_pred CCccCCCCCCcccCCCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHH
Q 013012 144 GLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV 223 (451)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~ 223 (451)
.+.+||++.+|+++++ ..+. ||+. ...++++++|+|+|++++|..+
T Consensus 158 ---------------~~~~yG~v~~d~~g~V-~~~~-----eKp~-------------~~~~~~~~~Giyi~~~~~l~~~ 203 (380)
T PRK05293 158 ---------------EASRFGIMNTDENMRI-VEFE-----EKPK-------------NPKSNLASMGIYIFNWKRLKEY 203 (380)
T ss_pred ---------------hccccCEEEECCCCcE-EEEE-----eCCC-------------CCCcceeeeEEEEEcHHHHHHH
Confidence 2557899999877664 4454 3421 1124688999999999998766
Q ss_pred HhcC----ccccccccchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCc
Q 013012 224 LDQK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRT 299 (451)
Q Consensus 224 ~~~~----~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (451)
+++. .+..++.+|+++.+++++
T Consensus 204 l~~~~~~~~~~~~~~~d~i~~l~~~~------------------------------------------------------ 229 (380)
T PRK05293 204 LIEDEKNPNSSHDFGKNVIPLYLEEG------------------------------------------------------ 229 (380)
T ss_pred HHHHhhcCCchhhhHHHHHHHHhhcC------------------------------------------------------
Confidence 5432 122345567888776543
Q ss_pred ceeEEEEeccchhhhhccCHHHHHHHchhccccccccC---CccccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCC
Q 013012 300 HKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLS---GYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKC 376 (451)
Q Consensus 300 ~~~~~~~~~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~---~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~ 376 (451)
.++++| +..+||.+++++++|+++++.++....... ....+.....+.+++.|++++.| .++.||++|.|+.
T Consensus 230 ~~v~~~--~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~-- 304 (380)
T PRK05293 230 EKLYAY--PFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYG-- 304 (380)
T ss_pred CeEEEE--EeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEE-ecCEECCCCEEcc--
Confidence 234444 335799999999999999998876543211 10111123345556677777777 4777888888863
Q ss_pred EEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEEcc-----eEECCCCEECCCCc
Q 013012 377 SVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD-----CQVLSLSTSVFLSL 445 (451)
Q Consensus 377 ~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~-----~~ig~~~~i~~~~~ 445 (451)
.+++|+||++|.||++|+|.+|+|++++.||++|.|.+|+|++++.|++++.+.+ .+||+++.|..++.
T Consensus 305 ~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~ 378 (380)
T PRK05293 305 TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKEVITVIGENEVIGVGTV 378 (380)
T ss_pred eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCCceeEEEeCCCCCCCCcE
Confidence 5678999999999999999999999999999999999999999999999999986 88999998887753
No 7
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=9e-47 Score=375.73 Aligned_cols=353 Identities=21% Similarity=0.314 Sum_probs=255.2
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccCCc-chHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhc-cCceee
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VDRLHV 79 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~-~~~~~~ 79 (451)
+++|||||||.|+||+|| |..+||||+||+|| |||+|+|++|.++|+++++|++++. .+.+.+|+.+.+ ......
T Consensus 5 ~~~avILAaG~GtRl~PL-T~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~ 81 (407)
T PRK00844 5 KVLAIVLAGGEGKRLMPL-TADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYK--SHSLDRHISQTWRLSGLLG 81 (407)
T ss_pred ceEEEEECCCCCCccchh-hcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccC--HHHHHHHHHhCcCccccCC
Confidence 489999999999999999 99999999999999 9999999999999999999999876 457777775422 112122
Q ss_pred EEEEc-C--------CCCChHHHHHHHHhcCCC---CcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCCcc
Q 013012 80 EVATV-P--------EDVGTAGALRAIAHHLTA---KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSE 147 (451)
Q Consensus 80 ~i~~~-~--------~~~gt~~~l~~~~~~l~~---~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~ 147 (451)
.++.. + ...||+++++.+++++.+ ++|+|++||.+++.++.+++++|+++++++|+++...+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~---- 157 (407)
T PRK00844 82 NYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPRE---- 157 (407)
T ss_pred CeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchH----
Confidence 23221 1 148999999999888743 3499999999999999999999999998888887654322
Q ss_pred CCCCCCcccCCCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhc-
Q 013012 148 AGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ- 226 (451)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~- 226 (451)
.+..||++.+|+++++ ..+.+ |+.... .. .....++++++|+|+|++++|..++++
T Consensus 158 -----------~~~~~Gvv~~d~~g~v-~~~~e-----Kp~~~~-~~-----~~~~~~~~~~~Giyi~~~~~l~~~l~~~ 214 (407)
T PRK00844 158 -----------EASAFGVIEVDPDGRI-RGFLE-----KPADPP-GL-----PDDPDEALASMGNYVFTTDALVDALRRD 214 (407)
T ss_pred -----------HcccCCEEEECCCCCE-EEEEE-----CCCCcc-cc-----cCCCCCcEEEeEEEEEeHHHHHHHHHHh
Confidence 2457899999987764 45543 321100 00 001125689999999999997555543
Q ss_pred ---CccccccccchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeE
Q 013012 227 ---KDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC 303 (451)
Q Consensus 227 ---~~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (451)
.....++.+|++|.+++++........ ... ..|. .
T Consensus 215 ~~~~~~~~~~~~dii~~l~~~~~v~~~~~~------------------------------~~~---~~g~-------n-- 252 (407)
T PRK00844 215 AADEDSSHDMGGDIIPRLVERGRAYVYDFS------------------------------TNE---VPGA-------T-- 252 (407)
T ss_pred hcCCcccccchhhHHHHHhccCeEEEEEcc------------------------------ccc---cccc-------c--
Confidence 123456778999999876421110000 000 0010 0
Q ss_pred EEEeccchhhhhccCHHHHHHHchhccccccccCCc----cccCCCceeCCCCee-CCC--cEECCCCEECCCCEECCCC
Q 013012 304 VYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGY----NFSAQNNIIHPSAEL-GSK--TTVGPHCMLGEGSQMGDKC 376 (451)
Q Consensus 304 ~~~~~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~~~----~~~~~~~~i~~~~~i-~~~--~~i~~~~~i~~~~~i~~~~ 376 (451)
....+||.+++++++|+++++.++........+ ...+. ....+++.+ ... ..+.++++||++|.|+ ++
T Consensus 253 ---~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~ 327 (407)
T PRK00844 253 ---ERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTS-SPNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GA 327 (407)
T ss_pred ---cCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCccccc-CCCCCCceEecCCCccceEEeCEEcCCCEEC-Ce
Confidence 013589999999999999999998754332111 01111 111233332 222 1245689999999998 99
Q ss_pred EEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEEcc
Q 013012 377 SVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD 431 (451)
Q Consensus 377 ~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~ 431 (451)
.|++|+||++|.|+++|+|.+|+||++++||++|.|.+|+|++++.|++++++.+
T Consensus 328 ~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 328 TVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred eeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence 9999999999999999999999999999999999999999999999999998865
No 8
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.2e-46 Score=376.55 Aligned_cols=363 Identities=22% Similarity=0.350 Sum_probs=267.2
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccCCc-chHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhc-cCce--
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VDRL-- 77 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~-~~~~-- 77 (451)
+++|||||||.|+||+|| |...||||+|++|+ |||+|+|++|.++|+++++|++++. .+.+.+++.+.+ ....
T Consensus 3 ~~~AVILAaG~GtRL~PL-T~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~--~~~i~~~l~~~~~~~~~~~ 79 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPL-TKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFN--SASLNRHISQTYNFDGFSG 79 (429)
T ss_pred cEEEEEECCCCCCcchhh-hcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCC--HHHHHHHHhcCcCccccCC
Confidence 479999999999999999 89999999999999 9999999999999999999999865 346777775422 1111
Q ss_pred e-eEEEE--c--CC---CCChHHHHHHHHhcCC---CCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCCc
Q 013012 78 H-VEVAT--V--PE---DVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLS 146 (451)
Q Consensus 78 ~-~~i~~--~--~~---~~gt~~~l~~~~~~l~---~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~ 146 (451)
+ +.+.. + .+ ..||+++++.+++++. .++|+|++||.+++.++.++++.|++.++++|+++.+.+..
T Consensus 80 g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~--- 156 (429)
T PRK02862 80 GFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEK--- 156 (429)
T ss_pred CEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChh---
Confidence 1 22221 1 11 2799999999988874 25799999999899999999999999889888887654321
Q ss_pred cCCCCCCcccCCCCCcccEEEecCCCceEEEeeccccc--cccccccHHHHhhcC-eeEEecCCccceEEeechHHHHHH
Q 013012 147 EAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAEL--EKDTRIRKSILRAVG-QMDIRADLMDAHMYAFNRSVLQEV 223 (451)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~--ek~~~i~~~~~~~~~-~~~~~s~l~~~giYi~~~~~l~~~ 223 (451)
.+..||++.+|+++++. .+.++++. .+.+.++.+++..++ ......+++++|+|+|++++|..+
T Consensus 157 ------------~~~~yG~i~~d~~g~V~-~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~ 223 (429)
T PRK02862 157 ------------DASGFGLMKTDDDGRIT-EFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDL 223 (429)
T ss_pred ------------hcccceEEEECCCCcEE-EEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHH
Confidence 24578999999877654 45443221 111223333333222 112234689999999999999777
Q ss_pred HhcCccccccccchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeE
Q 013012 224 LDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC 303 (451)
Q Consensus 224 ~~~~~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (451)
++..+++.++.+|++|++++++ +++
T Consensus 224 l~~~~~~~~~~~dil~~l~~~~-------------------------------------------------------~v~ 248 (429)
T PRK02862 224 LNKNPEYTDFGKEIIPEAIRDY-------------------------------------------------------KVQ 248 (429)
T ss_pred HHHCCChhhhHHHHHHHHhccC-------------------------------------------------------cEE
Confidence 6665455677789998875321 234
Q ss_pred EEEeccchhhhhccCHHHHHHHchhcc-ccccccC---C-ccccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEE
Q 013012 304 VYIASNSKYCVRLNSIQAFMDINRDVI-GEANHLS---G-YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV 378 (451)
Q Consensus 304 ~~~~~~~~~~~~i~~~~~y~~~~~~~l-~~~~~~~---~-~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i 378 (451)
+| ...+||.+++++++|+++|+.++ ...+... . .+..+ ...+.+++.+. ++.+ .+++||++|.| +++.|
T Consensus 249 ~~--~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~-~~~~~~~a~~~-~~~~-~~~~ig~~~~i-~~~~i 322 (429)
T PRK02862 249 SY--LFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYT-RARYLPPSKLL-DATI-TESIIAEGCII-KNCSI 322 (429)
T ss_pred EE--EeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceec-cCCCCCCcccc-ccEE-EeCEECCCCEE-CCcEE
Confidence 44 34689999999999999999987 3222211 0 11111 23345555553 5566 46899999999 88999
Q ss_pred eceEECCCCEECCCcEEeceEECC-------------------CCEECCCcEEeCeEECCCCEECCCcEEc---------
Q 013012 379 KRSVIGRHCRIGSNVKVVNSVVMN-------------------HVTIGDGCSIQGSVICSNAQLQERVALK--------- 430 (451)
Q Consensus 379 ~~svig~~~~ig~~~~i~~s~i~~-------------------~~~Ig~~~~i~~~ii~~~~~i~~~~~i~--------- 430 (451)
++|+||++|.||++|+|.+|+|+. ++.||++|.|.+|+|++++.||+++.+.
T Consensus 323 ~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~~~~~~~~~ 402 (429)
T PRK02862 323 HHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNKDNVEEAD 402 (429)
T ss_pred EEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEEecCCCccccc
Confidence 999999999999999999999987 6999999999999999999999999984
Q ss_pred ----ceEECCC-CEECCCC
Q 013012 431 ----DCQVLSL-STSVFLS 444 (451)
Q Consensus 431 ----~~~ig~~-~~i~~~~ 444 (451)
+++|++| ++|+.++
T Consensus 403 ~~~~~~~~~~~~~~~~~~~ 421 (429)
T PRK02862 403 REDQGFYIRDGIVVVVKNA 421 (429)
T ss_pred ccccceEeeCCEEEEcCCc
Confidence 2455666 5555554
No 9
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=2.1e-45 Score=368.58 Aligned_cols=350 Identities=19% Similarity=0.360 Sum_probs=253.2
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccCCc-chHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhcc-C----
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-D---- 75 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~-~---- 75 (451)
+++|||||||+|+||+|| |..+||||+|++|+ |||+|+|++|.++|+++++|+++++ .+.+.+|+.+.+. +
T Consensus 3 ~~~aIIlA~G~gtRl~Pl-T~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~--~~~i~~~l~~~~~~~~~~~ 79 (436)
T PLN02241 3 SVAAIILGGGAGTRLFPL-TKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFN--SASLNRHLSRAYNFGNGGN 79 (436)
T ss_pred ceEEEEEeCCCCCcchhh-hcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccC--HHHHHHHHhccCCCCCCcc
Confidence 499999999999999999 99999999999997 9999999999999999999999875 4567777765321 1
Q ss_pred --ceeeEEEE--cC-----CCCChHHHHHHHHhcCC------CCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeee
Q 013012 76 --RLHVEVAT--VP-----EDVGTAGALRAIAHHLT------AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSV 140 (451)
Q Consensus 76 --~~~~~i~~--~~-----~~~gt~~~l~~~~~~l~------~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~ 140 (451)
...+.+.. +. .+.||+++++.++..+. +++|+|++||.+++.++.+++++|+++++++|+++.++
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v 159 (436)
T PLN02241 80 FGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPV 159 (436)
T ss_pred cCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEec
Confidence 00123322 21 25899999998765543 36899999999999999999999999999999888765
Q ss_pred ccCCCccCCCCCCcccCCCCCcccEEEecCCCceEEEeeccccccc--cccccHHHHhhcC-eeEEecCCccceEEeech
Q 013012 141 PVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEK--DTRIRKSILRAVG-QMDIRADLMDAHMYAFNR 217 (451)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek--~~~i~~~~~~~~~-~~~~~s~l~~~giYi~~~ 217 (451)
+.+ ++.+||++.+|+++++ ..+.+++...+ ..+++..+|..++ +....++++++|+|+|++
T Consensus 160 ~~~---------------~~~~ygvv~~d~~~~v-~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~ 223 (436)
T PLN02241 160 DES---------------RASDFGLMKIDDTGRI-IEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKK 223 (436)
T ss_pred chh---------------hcCcceEEEECCCCCE-EEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEH
Confidence 421 2467899999887764 45553321110 0111222221111 112234799999999999
Q ss_pred HHHHHHHhcCc-cccccccchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCC
Q 013012 218 SVLQEVLDQKD-KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPV 296 (451)
Q Consensus 218 ~~l~~~~~~~~-~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (451)
++|..++++.. ...++.+|++|.++.++
T Consensus 224 ~~l~~ll~~~~~~~~~~~~dil~~l~~~g--------------------------------------------------- 252 (436)
T PLN02241 224 DVLLKLLRWRFPTANDFGSEIIPGAIKEG--------------------------------------------------- 252 (436)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHhhcC---------------------------------------------------
Confidence 99976655432 22245567777776542
Q ss_pred CCcceeEEEEeccchhhhhccCHHHHHHHchhccccccccC----CccccCCCceeCCCCeeCCCcEECCCCEECCCCEE
Q 013012 297 RRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLS----GYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQM 372 (451)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~----~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i 372 (451)
.++++|. ..+||.+++++++|++++++++...+... ........ ...+++.+ .++.+.+ ++|+++|.|
T Consensus 253 ---~~v~~~~--~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~~~i~~-s~I~~~~~I 324 (436)
T PLN02241 253 ---YNVQAYL--FDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSP-RFLPPSKI-EDCRITD-SIISHGCFL 324 (436)
T ss_pred ---CeEEEEe--eCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccC-CCCCCcEe-cCCeEEE-eEEcCCcEE
Confidence 2344553 35799999999999999999987543211 01111111 22245555 3455644 889999999
Q ss_pred CCCCEEeceEECCCCEECCCcEEeceEECCC-------------------CEECCCcEEeCeEECCCCEECCCcEEc
Q 013012 373 GDKCSVKRSVIGRHCRIGSNVKVVNSVVMNH-------------------VTIGDGCSIQGSVICSNAQLQERVALK 430 (451)
Q Consensus 373 ~~~~~i~~svig~~~~ig~~~~i~~s~i~~~-------------------~~Ig~~~~i~~~ii~~~~~i~~~~~i~ 430 (451)
+ +|.|++|+||++|.||++|+|.+|+++.. ++||++|.|++++|+++++||+++.+.
T Consensus 325 ~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~ 400 (436)
T PLN02241 325 R-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVII 400 (436)
T ss_pred c-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcEEe
Confidence 9 99999999999999999999999999773 389999999999999999999999885
No 10
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=4e-45 Score=365.01 Aligned_cols=343 Identities=20% Similarity=0.293 Sum_probs=251.6
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccCCcc-hHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhcc-Cc---
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRP-VLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-DR--- 76 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkp-li~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~-~~--- 76 (451)
+++|||||||.|+||+|| |..+||||+|++|+| ||+|+|++|.++|+++++|++++. .+.+.+++.+.+. .+
T Consensus 15 ~~~aVILAaG~GtRl~pL-T~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~--~~~i~~~~~~~~~~~~~~~ 91 (425)
T PRK00725 15 DTLALILAGGRGSRLKEL-TDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYK--AHSLIRHIQRGWSFFREEL 91 (425)
T ss_pred ceEEEEECCCCCCcchhh-hCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCC--HHHHHHHHHhhhcccccCC
Confidence 578999999999999999 889999999999996 999999999999999999999865 4467777754221 00
Q ss_pred -eeeEEEE-------cCCCCChHHHHHHHHhcCC---CCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCC
Q 013012 77 -LHVEVAT-------VPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL 145 (451)
Q Consensus 77 -~~~~i~~-------~~~~~gt~~~l~~~~~~l~---~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~ 145 (451)
..+.+.. ++...||+++++.+++++. +++|+|++||.+++.++.++++.|+++++++|+++...+..
T Consensus 92 ~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~-- 169 (425)
T PRK00725 92 GEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPRE-- 169 (425)
T ss_pred CCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchh--
Confidence 0122211 1224899999999988875 35699999999999999999999999999899887654322
Q ss_pred ccCCCCCCcccCCCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHh
Q 013012 146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (451)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~ 225 (451)
.+..||++.+|++++ +..+.+ |+.... .. . ....++++++|+|+|++++|..+++
T Consensus 170 -------------~~~~yG~v~~d~~~~-V~~~~E-----Kp~~~~-~~-~----~~~~~~l~n~GIYi~~~~~L~~~L~ 224 (425)
T PRK00725 170 -------------EASAFGVMAVDENDR-ITAFVE-----KPANPP-AM-P----GDPDKSLASMGIYVFNADYLYELLE 224 (425)
T ss_pred -------------hcccceEEEECCCCC-EEEEEE-----CCCCcc-cc-c----cCccceEEEeeEEEEeHHHHHHHHH
Confidence 256789999998776 445543 332100 00 0 0112468999999999998865554
Q ss_pred cC----ccccccccchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcce
Q 013012 226 QK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK 301 (451)
Q Consensus 226 ~~----~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (451)
+. ....++.+|++|.+++++.
T Consensus 225 ~~~~~~~~~~~~~~dii~~l~~~~~------------------------------------------------------- 249 (425)
T PRK00725 225 EDAEDPNSSHDFGKDIIPKIVEEGK------------------------------------------------------- 249 (425)
T ss_pred HhhcCCCccchhhHHHHHHHhccCc-------------------------------------------------------
Confidence 31 1234566789988876531
Q ss_pred eEEEEe---------ccchhhhhccCHHHHHHHchhccccccccCCc----cccCCCceeCCCCee---CCCc-EECCCC
Q 013012 302 CCVYIA---------SNSKYCVRLNSIQAFMDINRDVIGEANHLSGY----NFSAQNNIIHPSAEL---GSKT-TVGPHC 364 (451)
Q Consensus 302 ~~~~~~---------~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~~~----~~~~~~~~i~~~~~i---~~~~-~i~~~~ 364 (451)
+++|.. +..+||.+++++++|+++|++++........+ ...+. ....+++.+ +.++ .+..++
T Consensus 250 v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~-~~~~~~~~~~~~~~~~~~~~~~s 328 (425)
T PRK00725 250 VYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTY-QEQLPPAKFVFDRSGRRGMAINS 328 (425)
T ss_pred EEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccC-CCCCCCCeEeccCCCCcceEEeC
Confidence 111211 23589999999999999999988643322111 01111 112233322 1221 123589
Q ss_pred EECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEEcc
Q 013012 365 MLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD 431 (451)
Q Consensus 365 ~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~ 431 (451)
+||++|.| ++|.|++|+||++|.||++|+|.+|+||++|.||++|.|.+|+|++++.|+++++|++
T Consensus 329 ~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~~ 394 (425)
T PRK00725 329 LVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIGE 394 (425)
T ss_pred EEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCCEECCCCEECC
Confidence 99999999 7899999999999999999999999999999999999999999999999999988873
No 11
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-46 Score=329.32 Aligned_cols=370 Identities=21% Similarity=0.363 Sum_probs=276.6
Q ss_pred CCceEEEEecC--CCCCCCCCCCCCCcccccccCCcchHHHHHHHHHH-CCCcEEEEEecCchhhHHHHHhhhhhcc-Cc
Q 013012 1 MDFQVVVLAGG--TSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAYV-DR 76 (451)
Q Consensus 1 m~~~avIlAgG--~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~-~gi~~iivv~~~~~~~~~i~~~~~~~~~-~~ 76 (451)
|+++||||.|| +||||+|| +.+.||||+|++|+|||+|.|+++.+ .|..+|+++.-++ .+.+.+|+..-.. -+
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPL-Sf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~--e~~f~~fis~~~~e~~ 77 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPL-SFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYE--ERVFTDFISAIQQEFK 77 (407)
T ss_pred CceEEEEEecCCCCCcccccc-ccCCCCCccccCCcchhhhhHHHHhcccchhheeEEeccc--chHHHHHHHHHHhhcc
Confidence 88999999999 69999999 89999999999999999999999987 5899999987665 3456666654211 13
Q ss_pred eeeEEEEcCCCCChHHHHHHHHhcCC---CCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCC
Q 013012 77 LHVEVATVPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA 153 (451)
Q Consensus 77 ~~~~i~~~~~~~gt~~~l~~~~~~l~---~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 153 (451)
..+++..++.+.||+++|+..++.+- ++.++|++||..++.++.+|++.|+..++.+|++.+++..+
T Consensus 78 ~pvrYL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e---------- 147 (407)
T KOG1460|consen 78 VPVRYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSRE---------- 147 (407)
T ss_pred cchhhhccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHh----------
Confidence 45677767778999999999877653 45699999999999999999999999999999998876532
Q ss_pred cccCCCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCcccccc
Q 013012 154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSL 233 (451)
Q Consensus 154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~~~s~ 233 (451)
...+||.++.|+.+..++||. ||+. ++.|+.+|+|+|+|++++|..+.+- + ..
T Consensus 148 -----~asnfG~lV~dP~t~evlHYv-----eKPs-------------TfvSd~InCGvYlF~~eif~~i~~v---~-~q 200 (407)
T KOG1460|consen 148 -----QASNFGCLVEDPSTGEVLHYV-----EKPS-------------TFVSDIINCGVYLFTPEIFNAIAEV---Y-RQ 200 (407)
T ss_pred -----HhhccCeeeecCCcCceEEee-----cCcc-------------hhhhcccceeEEEecHHHHHHHHHH---H-HH
Confidence 246799999998888899998 4543 5678999999999999999865322 1 11
Q ss_pred ccchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEEEeccchhh
Q 013012 234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC 313 (451)
Q Consensus 234 ~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (451)
++|+.... +++. .+..+++ +. -.+.+|.+.+.-| ..+.++| ....||
T Consensus 201 ~~~~~~~~--~~~~---~l~~g~~-------d~-------------irLeqDvlspLag------~k~lY~y--~t~~fW 247 (407)
T KOG1460|consen 201 RQDLLEVE--KDLP---LLQPGPA-------DF-------------IRLEQDVLSPLAG------SKQLYAY--ETTDFW 247 (407)
T ss_pred HHhhhhhh--hccc---ccCCCcc-------ce-------------EEeechhhhhhcC------CCceEEE--ecccHH
Confidence 12211100 0000 0000000 00 0112222111111 1234444 567899
Q ss_pred hhccCHHHHHHHchhcccc----cc-cc---CCc-cccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEEC
Q 013012 314 VRLNSIQAFMDINRDVIGE----AN-HL---SGY-NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIG 384 (451)
Q Consensus 314 ~~i~~~~~y~~~~~~~l~~----~~-~~---~~~-~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig 384 (451)
..+.++.+-+.+++.+|.. .+ .+ .+. ..+.++++|||+|.+++++.||+|+.||.+++||+|+++++|+|-
T Consensus 248 ~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl 327 (407)
T KOG1460|consen 248 SQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIIL 327 (407)
T ss_pred HHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeec
Confidence 9999888766666655431 11 11 121 245578999999999999999999999999999999999999999
Q ss_pred CCCEECCCcEEeceEECCCCEECCCcEEeC--------------eEECCCCEECCCcEEcceEECCCCEECCC
Q 013012 385 RHCRIGSNVKVVNSVVMNHVTIGDGCSIQG--------------SVICSNAQLQERVALKDCQVLSLSTSVFL 443 (451)
Q Consensus 385 ~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~--------------~ii~~~~~i~~~~~i~~~~ig~~~~i~~~ 443 (451)
++|.|.+|+.+-+|+|+.++.||.++++++ ++.|+.+.+++.+.+.+|++-++-.+.-.
T Consensus 328 ~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~v~~s~vlp~k~l~vs 400 (407)
T KOG1460|consen 328 DDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVIVLNSIVLPNKELNVS 400 (407)
T ss_pred cCcEeeccceEEeeeecccccccceeeecccccccCCCCCcceeEEecccceecceeEEeeeeEecCCcccee
Confidence 999999999999999999999999999973 67888888888888888887777665543
No 12
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=1.3e-43 Score=349.08 Aligned_cols=337 Identities=24% Similarity=0.386 Sum_probs=237.3
Q ss_pred EEEEecCCCCCCCCCCCCCCcccccccCCc-chHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhcc-Cc---eee
Q 013012 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-DR---LHV 79 (451)
Q Consensus 5 avIlAgG~g~Rl~pl~~~~~pK~llpv~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~-~~---~~~ 79 (451)
|||||||.|+||+|+ |...||+|+|++|+ |||+|++++|.++|+++++|+++++ .+.+.+++.+.+. .+ ..+
T Consensus 1 aiILAaG~gtRl~pl-t~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~~~~ 77 (361)
T TIGR02091 1 AMVLAGGRGSRLSPL-TKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYK--SHSLNRHIQRGWDFDGFIDGFV 77 (361)
T ss_pred CEEeCCCCCCccchh-hhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccC--hHHHHHHHHhccCccCccCCCE
Confidence 699999999999999 99999999999999 8999999999999999999999865 3467777754221 11 123
Q ss_pred EEEE-------cCCCCChHHHHHHHHhcCC---CCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCC
Q 013012 80 EVAT-------VPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAG 149 (451)
Q Consensus 80 ~i~~-------~~~~~gt~~~l~~~~~~l~---~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 149 (451)
++.. .+...||+++++.+++.+. +++|++++||.+++.++.++++.|++.++++++++...+.+
T Consensus 78 ~~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~------ 151 (361)
T TIGR02091 78 TLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRK------ 151 (361)
T ss_pred EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChH------
Confidence 3321 1123799999998888764 35699999999999999999999988888788877654321
Q ss_pred CCCCcccCCCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcC--
Q 013012 150 SSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK-- 227 (451)
Q Consensus 150 ~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~-- 227 (451)
.+..||++.+|+++++ ..+. ||+..... . ... ...+++++|+|+|++++|..+++..
T Consensus 152 ---------~~~~~g~v~~d~~~~v-~~~~-----ekp~~~~~-~-~~~----~~~~~~~~Giyi~~~~~l~~~l~~~~~ 210 (361)
T TIGR02091 152 ---------EASRFGVMQVDEDGRI-VDFE-----EKPANPPS-I-PGM----PDFALASMGIYIFDKDVLKELLEEDAD 210 (361)
T ss_pred ---------hcccccEEEECCCCCE-EEEE-----ECCCCccc-c-ccc----ccccEEeeeEEEEcHHHHHHHHHHHhh
Confidence 2457899999877664 4444 33211000 0 000 0113789999999999986555431
Q ss_pred --ccccccccchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEE
Q 013012 228 --DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVY 305 (451)
Q Consensus 228 --~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (451)
....++.+|+++.+++++ +++.|
T Consensus 211 ~~~~~~~~~~d~l~~l~~~~-------------------------------------------------------~v~~~ 235 (361)
T TIGR02091 211 DPESSHDFGKDIIPRALEEG-------------------------------------------------------SVQAY 235 (361)
T ss_pred cCCcccccHHHHHHHHhhcC-------------------------------------------------------ceEEE
Confidence 122345567777776532 24445
Q ss_pred EeccchhhhhccCHHHHHHHchhccccccccCC----ccccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEece
Q 013012 306 IASNSKYCVRLNSIQAFMDINRDVIGEANHLSG----YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRS 381 (451)
Q Consensus 306 ~~~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~~----~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~s 381 (451)
.. .++|.+++++++|+++++.++........ ....+....+.+++.+++++.+ +++.||++|+|+++ .|++|
T Consensus 236 ~~--~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~~s 311 (361)
T TIGR02091 236 LF--SGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQV-VDSLVSEGCIISGA-TVSHS 311 (361)
T ss_pred ee--CCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEE-ECCEECCCCEECCC-EEEcc
Confidence 33 48999999999999999998865432110 0011122345566666666654 56777777777765 67777
Q ss_pred EECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEEc
Q 013012 382 VIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK 430 (451)
Q Consensus 382 vig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~ 430 (451)
+||++|.|+++|+|.+|+|++++.||+++.|.+|+||+++.|++++.|.
T Consensus 312 ~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 312 VLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred EECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCEeC
Confidence 8888888888888888888888888888888877777777777776654
No 13
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=6.8e-43 Score=342.66 Aligned_cols=340 Identities=20% Similarity=0.311 Sum_probs=244.0
Q ss_pred eEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEEE
Q 013012 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (451)
Q Consensus 4 ~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~ 83 (451)
+|||||||.|+||+|+ |..+||+|+|++|+|||+|+++++.++|+++++++++++. .+.+.+++.+.......+.++.
T Consensus 1 kaiIlAaG~gtRl~pl-t~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 78 (353)
T TIGR01208 1 KALILAAGKGTRLRPL-TFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVT-GEEIKEIVGEGERFGAKITYIV 78 (353)
T ss_pred CEEEECCcCcCccCcc-ccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCC-HHHHHHHHhcccccCceEEEEE
Confidence 6899999999999999 8999999999999999999999999999999999998622 4567777754211123345555
Q ss_pred cCCCCChHHHHHHHHhcCCCCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccCCCCCcc
Q 013012 84 VPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRY 163 (451)
Q Consensus 84 ~~~~~gt~~~l~~~~~~l~~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (451)
++...||+++++.+++++.++++++++||.+++.++.++++.|+++++++++++.+.+ ++..|
T Consensus 79 ~~~~~G~~~al~~a~~~l~~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~-----------------~~~~~ 141 (353)
T TIGR01208 79 QGEPLGLAHAVYTARDFLGDDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVR-----------------DPTAF 141 (353)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECC-----------------ChhhC
Confidence 6667999999999999887678999999988899999999999998988888876532 24568
Q ss_pred cEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCcc--ccccccchhhHH
Q 013012 164 NIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK--FQSLKQDVLPYL 241 (451)
Q Consensus 164 ~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~--~~s~~~d~lp~l 241 (451)
+++.+|++++ +..+. ||+. ...++++++|+|+|++.+++.+.+.... .+..-.|+++.+
T Consensus 142 g~~~~~~~~~-v~~~~-----ekp~-------------~~~~~~~~~Giy~~~~~l~~~l~~~~~~~~~e~~l~d~l~~l 202 (353)
T TIGR01208 142 GVAVLEDGKR-ILKLV-----EKPK-------------EPPSNLAVVGLYMFRPLIFEAIKNIKPSWRGELEITDAIQWL 202 (353)
T ss_pred eEEEEcCCCc-EEEEE-----ECCC-------------CCCccceEEEEEEECHHHHHHHHhcCCCCCCcEEHHHHHHHH
Confidence 8888865544 44544 3321 1124688999999999887655321110 000113566665
Q ss_pred HHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEEEeccchhhhhccCHHH
Q 013012 242 VRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQA 321 (451)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 321 (451)
++++ .++++| ...+||.+++++++
T Consensus 203 ~~~g------------------------------------------------------~~v~~~--~~~g~w~digt~~d 226 (353)
T TIGR01208 203 IEKG------------------------------------------------------YKVGGS--KVTGWWKDTGKPED 226 (353)
T ss_pred HHcC------------------------------------------------------CeEEEE--EeCcEEEeCCCHHH
Confidence 5432 234444 34678999999999
Q ss_pred HHHHchhcccccc-ccCCccccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEE-----
Q 013012 322 FMDINRDVIGEAN-HLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKV----- 395 (451)
Q Consensus 322 y~~~~~~~l~~~~-~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i----- 395 (451)
|+++++.++.+.. .+.+ +.....+.+.+.+++++.| .++.|++.|.||++|.|++++|+++|.||++|+|
T Consensus 227 l~~a~~~ll~~~~~~~~~---i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i 302 (353)
T TIGR01208 227 LLDANRLILDEVEREVQG---VDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEV 302 (353)
T ss_pred HHHHHHHHHhhcccccCC---cCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEE
Confidence 9999999886432 1211 1233445555555555555 5555555556666666555555555555555554
Q ss_pred eceEECCCCEECCC-cEEeCeEECCCCEECCCcEEcc---eEECCCCEEC
Q 013012 396 VNSVVMNHVTIGDG-CSIQGSVICSNAQLQERVALKD---CQVLSLSTSV 441 (451)
Q Consensus 396 ~~s~i~~~~~Ig~~-~~i~~~ii~~~~~i~~~~~i~~---~~ig~~~~i~ 441 (451)
.+|+|+++++|+.+ +.+.+++|++++.|++++.+.. .++|+.++|+
T Consensus 303 ~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 303 EHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRPGDLRLTIGDYSQVE 352 (353)
T ss_pred EeeEEcCCCEEcCCcceeecCEEcCCCEECCCcccccccceEEcCCceec
Confidence 58899999999888 4888999999999999998863 6788888764
No 14
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=1.1e-43 Score=350.43 Aligned_cols=335 Identities=17% Similarity=0.295 Sum_probs=234.9
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccCCc-chHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCcee--
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLH-- 78 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~-- 78 (451)
+|+|||||||+|+||+|| |...||||+||+|| |||+|++++|.++|+++++|+++++. .+++++|+.+.......
T Consensus 2 ~~~avila~g~gtRL~PL-T~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~-~~~I~~~l~~~~~~~~~~~ 79 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPL-TKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKE-RQSLFDHLGSGREWDLHRK 79 (369)
T ss_pred cEEEEEECCCCCcccccc-ccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCc-HHHHHHHHhCCCCCCcccc
Confidence 589999999999999999 99999999999999 99999999999999999999999752 22677887542110111
Q ss_pred ----eEEEEcCCC-C--ChHHHHHHHHhcCC---CCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccC
Q 013012 79 ----VEVATVPED-V--GTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEA 148 (451)
Q Consensus 79 ----~~i~~~~~~-~--gt~~~l~~~~~~l~---~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 148 (451)
..++.++.. . |++++++.+++++. +++|+|++||.+++.++.+++++|+++++++|+++.+++..
T Consensus 80 ~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~----- 154 (369)
T TIGR02092 80 RDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPA----- 154 (369)
T ss_pred cCcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHH-----
Confidence 112233333 2 56677888887763 36799999999999999999999999999999888764311
Q ss_pred CCCCCcccCCCCCcc-cEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcC
Q 013012 149 GSSGAKDKTKKPGRY-NIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK 227 (451)
Q Consensus 149 ~~~~~~~~~~~~~~~-~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~ 227 (451)
.+..| +++..|++++ +..+.+ +++. ..+.++++|+|+|++++|..+++..
T Consensus 155 ----------~~~~~g~vv~~~~~g~-v~~~~~----~~~~--------------~~~~~~~~Giyi~~~~~l~~~l~~~ 205 (369)
T TIGR02092 155 ----------DASEYDTILRFDESGK-VKSIGQ----NLNP--------------EEEENISLDIYIVSTDLLIELLYEC 205 (369)
T ss_pred ----------HccccCcEEEEcCCCC-EEeccc----cCCC--------------CCcceeeeeEEEEEHHHHHHHHHHH
Confidence 13456 4556766654 433321 1110 0123568999999999875555431
Q ss_pred c--cccccccchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEE
Q 013012 228 D--KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVY 305 (451)
Q Consensus 228 ~--~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (451)
. .....-.|+++.++++ .+++.|
T Consensus 206 ~~~~~~~~~~d~i~~~~~~-------------------------------------------------------~~v~~~ 230 (369)
T TIGR02092 206 IQRGKLTSLEELIRENLKE-------------------------------------------------------LNINAY 230 (369)
T ss_pred hhcCccccHHHHHHHHhcc-------------------------------------------------------CcEEEE
Confidence 1 1111123455544321 123344
Q ss_pred EeccchhhhhccCHHHHHHHchhccccccccCCccccC----CCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEece
Q 013012 306 IASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSA----QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRS 381 (451)
Q Consensus 306 ~~~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~~~~~~~----~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~s 381 (451)
...+||.+++++++|++++++++............. ....+.+++.|++++.| ++|+||++|.|+ +.|++|
T Consensus 231 --~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~~s 305 (369)
T TIGR02092 231 --EYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKV-ENSLVANGCIIE--GKVENS 305 (369)
T ss_pred --ecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEE-EEeEEcCCCEEe--eEEeCC
Confidence 346799999999999999998886532111000000 01112366777777777 678888888886 357888
Q ss_pred EECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEEcce
Q 013012 382 VIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDC 432 (451)
Q Consensus 382 vig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~~ 432 (451)
+||++|.|+++|+|.+|+|++++.|++++.+.+|+||++++|++++.+.+.
T Consensus 306 ~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~~~ 356 (369)
T TIGR02092 306 ILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIAGT 356 (369)
T ss_pred EECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEeCCC
Confidence 999999999999999999999999999999999999999888888887654
No 15
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.1e-43 Score=327.32 Aligned_cols=354 Identities=20% Similarity=0.291 Sum_probs=240.2
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeE
Q 013012 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (451)
Q Consensus 1 m~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (451)
|++.+||||||.|||| .+..||.|.|++||||++|+|+.+...+.+++++++++. .+.+++.+.+. .++.
T Consensus 1 ~~~~~vILAAGkGTRM----kS~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~--ae~V~~~~~~~----~~v~ 70 (460)
T COG1207 1 MSLSAVILAAGKGTRM----KSDLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHG--AEQVREALAER----DDVE 70 (460)
T ss_pred CCceEEEEecCCCccc----cCCCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCC--HHHHHHHhccc----cCce
Confidence 7889999999999999 678999999999999999999999999999999999854 45666665432 2588
Q ss_pred EEEcCCCCChHHHHHHHHhcCC-C--CcEEEEcCC--ccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcc
Q 013012 81 VATVPEDVGTAGALRAIAHHLT-A--KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKD 155 (451)
Q Consensus 81 i~~~~~~~gt~~~l~~~~~~l~-~--~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 155 (451)
++.|.+++||++|+.++.+++. + .++||++|| +++...++.+++.|...++.+++++...+
T Consensus 71 ~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~-------------- 136 (460)
T COG1207 71 FVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELD-------------- 136 (460)
T ss_pred EEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcC--------------
Confidence 9999999999999999999883 3 359999999 88888999999999999999999988653
Q ss_pred cCCCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCcccccccc
Q 013012 156 KTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQ 235 (451)
Q Consensus 156 ~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~~~s~~~ 235 (451)
+|+.||.|..++++. +..++| +|+....+..+ ..+|+|+|+|+.+.|..++++....+.-++
T Consensus 137 ---dP~GYGRIvr~~~g~-V~~IVE----~KDA~~eek~I----------~eiNtGiy~f~~~~L~~~L~~l~nnNaqgE 198 (460)
T COG1207 137 ---DPTGYGRIVRDGNGE-VTAIVE----EKDASEEEKQI----------KEINTGIYAFDGAALLRALPKLSNNNAQGE 198 (460)
T ss_pred ---CCCCcceEEEcCCCc-EEEEEE----cCCCCHHHhcC----------cEEeeeEEEEcHHHHHHHHHHhccccccCc
Confidence 478999999998876 455655 45443222221 468999999999998888876554455556
Q ss_pred chhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEEEeccchhhhh
Q 013012 236 DVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVR 315 (451)
Q Consensus 236 d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (451)
.+|+.++.-....+ .++.++..+.......
T Consensus 199 YYLTDvI~i~~~~g--------------------------------------------------~~V~a~~~~d~~E~~G 228 (460)
T COG1207 199 YYLTDVIAIARNEG--------------------------------------------------EKVRAVHVDDEEEVLG 228 (460)
T ss_pred EeHHHHHHHHHhCC--------------------------------------------------CeEEEEecCchHHhcC
Confidence 66666654321110 1111221111111222
Q ss_pred ccCHHHHHHHch--------hcccccccc--CCccccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEe------
Q 013012 316 LNSIQAFMDINR--------DVIGEANHL--SGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK------ 379 (451)
Q Consensus 316 i~~~~~y~~~~~--------~~l~~~~~~--~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~------ 379 (451)
+|+....-++.+ ..+.....+ +...+++.+..+++.+.|.+++.+.+++.||++|+||++|.|+
T Consensus 229 VN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~ 308 (460)
T COG1207 229 VNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGD 308 (460)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcC
Confidence 333222222211 111111111 1122333333444444444444333333444444444443333
Q ss_pred -----------ceEECCCCEECCCcEEe-ceEECCCCEECCCcEEeCeEECCCCEECCCcEEcceEECCCCEECCCCcc
Q 013012 380 -----------RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVLSLSTSVFLSLS 446 (451)
Q Consensus 380 -----------~svig~~~~ig~~~~i~-~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~~~ig~~~~i~~~~~~ 446 (451)
+|.||++|.||++++++ +|.|+++++||..+.++++.||+++.+++-++|+++.||++++|++|+..
T Consensus 309 ~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtIt 387 (460)
T COG1207 309 NAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTIT 387 (460)
T ss_pred CCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEE
Confidence 34556666666666666 67777777777777888888999999999999999999999999998854
No 16
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2e-39 Score=328.91 Aligned_cols=347 Identities=18% Similarity=0.286 Sum_probs=251.4
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEE
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i 81 (451)
+++|||||||.|+||+ ...||+|+|++|+|||+|+|+++.++|++++++++++. .+.+.+++.+. ..+.+
T Consensus 3 ~~~avIlAaG~g~Rl~----~~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~--~~~i~~~~~~~----~~i~~ 72 (459)
T PRK14355 3 NLAAIILAAGKGTRMK----SDLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQ--AEKVREHFAGD----GDVSF 72 (459)
T ss_pred cceEEEEcCCCCcccC----CCCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCC--HHHHHHHhccC----CceEE
Confidence 4899999999999994 46899999999999999999999999999999999865 34566666432 13556
Q ss_pred EEcCCCCChHHHHHHHHhcCCC--CcEEEEcCCc--cCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccC
Q 013012 82 ATVPEDVGTAGALRAIAHHLTA--KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT 157 (451)
Q Consensus 82 ~~~~~~~gt~~~l~~~~~~l~~--~~~lvl~~D~--i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 157 (451)
..+++..|++++++.+++++.+ ++|+++.||. +.+.++..+++.|...+++++++.....
T Consensus 73 ~~~~~~~Gt~~al~~a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~---------------- 136 (459)
T PRK14355 73 ALQEEQLGTGHAVACAAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLE---------------- 136 (459)
T ss_pred EecCCCCCHHHHHHHHHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcC----------------
Confidence 6667779999999999988853 5799999994 6678899999999888888877765432
Q ss_pred CCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCcc----cccc
Q 013012 158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK----FQSL 233 (451)
Q Consensus 158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~----~~s~ 233 (451)
.+..|+.+.+|++++++ .+. ||+...+. ...++++++|+|+|++++|...++.... .+..
T Consensus 137 -~~~~~g~v~~d~~g~v~-~~~-----ek~~~~~~---------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~ 200 (459)
T PRK14355 137 -NPFGYGRIVRDADGRVL-RIV-----EEKDATPE---------ERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYY 200 (459)
T ss_pred -CCCcCCEEEEcCCCCEE-EEE-----EcCCCChh---------HhhccEEEEEEEEEeHHHHHHHHHHcCccccCCcee
Confidence 24568888888877644 444 22211000 0124678999999999976554432110 1111
Q ss_pred ccchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEEEeccchhh
Q 013012 234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC 313 (451)
Q Consensus 234 ~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (451)
-+|+++.+++++ .++.+|......+|
T Consensus 201 ~~d~i~~l~~~g------------------------------------------------------~~v~~~~~~~~~~~ 226 (459)
T PRK14355 201 LTDIVAMAAAEG------------------------------------------------------LRCLAFPVADPDEI 226 (459)
T ss_pred HHHHHHHHHHCC------------------------------------------------------CeEEEEEcCCHHHh
Confidence 146666666442 23445533222348
Q ss_pred hhccCHHHHHHHchhcccccc---------ccCCc-cccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEE
Q 013012 314 VRLNSIQAFMDINRDVIGEAN---------HLSGY-NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVI 383 (451)
Q Consensus 314 ~~i~~~~~y~~~~~~~l~~~~---------~~~~~-~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svi 383 (451)
.+++++++|+++++.++.... .+... .++.+++.|++++.|++++.|++++.||++|.|+++|.|.+|+|
T Consensus 227 ~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~I 306 (459)
T PRK14355 227 MGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRI 306 (459)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEE
Confidence 999999999999775543210 11111 23556677778888888888888899999999999999999999
Q ss_pred CCCCEECCCcEEeceEECCCCEECCCcEEe-CeEECCCCEECCCcE-----------------EcceEECCCCEECCCC
Q 013012 384 GRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVA-----------------LKDCQVLSLSTSVFLS 444 (451)
Q Consensus 384 g~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~-~~ii~~~~~i~~~~~-----------------i~~~~ig~~~~i~~~~ 444 (451)
|++|.|+++|+|.+++|++++.||+++.+. ++.|++++.|++++. ++++.||+++.|++++
T Consensus 307 g~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~ 385 (459)
T PRK14355 307 GDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEGSKASHLTYLGDATIGRNVNIGCGT 385 (459)
T ss_pred cCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCEECCCceeeeeccccCCEECCCCEEccce
Confidence 999999999999999999999999888884 677777777776543 3345666666666654
No 17
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=9.1e-40 Score=331.53 Aligned_cols=345 Identities=18% Similarity=0.230 Sum_probs=242.9
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeE
Q 013012 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (451)
Q Consensus 1 m~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (451)
|+++|||||||.|+||++ ..||+|+|++|+|||+|++++|.++|+++++|+++++ .+.+++++.. .++.
T Consensus 6 ~~~~avILAaG~gtRl~~----~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~--~~~i~~~~~~-----~~i~ 74 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS----ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHG--AEQVEAALQG-----SGVA 74 (481)
T ss_pred CCceEEEECCCCCCcCCC----CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCC--HHHHHHHhcc-----CCcE
Confidence 679999999999999954 4899999999999999999999999999999999865 3456666532 2466
Q ss_pred EEEcCCCCChHHHHHHHHhcCC--CCcEEEEcCC--ccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCccc
Q 013012 81 VATVPEDVGTAGALRAIAHHLT--AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (451)
Q Consensus 81 i~~~~~~~gt~~~l~~~~~~l~--~~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 156 (451)
++.++.+.||+++++.+++.+. +++|+|++|| ++.+.+++.+++.|+++++.+|+++...+
T Consensus 75 ~v~~~~~~Gt~~al~~~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~--------------- 139 (481)
T PRK14358 75 FARQEQQLGTGDAFLSGASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELP--------------- 139 (481)
T ss_pred EecCCCcCCcHHHHHHHHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcC---------------
Confidence 7666677899999999988774 3569999999 47788899999999998888888776543
Q ss_pred CCCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHH---HHHHHhcCc-cccc
Q 013012 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSV---LQEVLDQKD-KFQS 232 (451)
Q Consensus 157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~---l~~~~~~~~-~~~s 232 (451)
.+.+||++.+|++++ +..+. ||+...+ .+..++++++|+|+|++++ ++.+.+... ...+
T Consensus 140 --~~~~yG~v~~d~~g~-v~~~~-----Ek~~~~~---------~~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~ 202 (481)
T PRK14358 140 --DATGYGRIVRGADGA-VERIV-----EQKDATD---------AEKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYY 202 (481)
T ss_pred --CCCCceEEEECCCCC-EEEEE-----ECCCCCh---------hHhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEE
Confidence 145689999998776 44554 3321100 0112357899999999665 332211111 1122
Q ss_pred cccchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEEEeccchh
Q 013012 233 LKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY 312 (451)
Q Consensus 233 ~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (451)
+ +|+++.+++++. +++.| +..++
T Consensus 203 l-~d~i~~~~~~g~------------------------------------------------------~i~~~--~~~~~ 225 (481)
T PRK14358 203 L-TDLLGLYRAGGA------------------------------------------------------QVRAF--KLSDP 225 (481)
T ss_pred H-HHHHHHHHHCCC------------------------------------------------------eEEEE--ecCCH
Confidence 3 477777765531 22333 22345
Q ss_pred hhhccCHHHHHHHchh-cccc---------cccc--CCccccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEec
Q 013012 313 CVRLNSIQAFMDINRD-VIGE---------ANHL--SGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR 380 (451)
Q Consensus 313 ~~~i~~~~~y~~~~~~-~l~~---------~~~~--~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~ 380 (451)
|..++.-.+|+.+++. ++.. ...+ ....++.++++|++++.|++++.|.+++.||++|.|+++|.|++
T Consensus 226 ~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~ 305 (481)
T PRK14358 226 DEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTD 305 (481)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEee
Confidence 5555544444333332 2211 1111 11122356777888888888888888888999999999999999
Q ss_pred eEECCCCEECCCcEEeceEECCCCEECCCcEEe-CeEECCCCEECCCcEE-----------------cceEECCCCEECC
Q 013012 381 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL-----------------KDCQVLSLSTSVF 442 (451)
Q Consensus 381 svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~-~~ii~~~~~i~~~~~i-----------------~~~~ig~~~~i~~ 442 (451)
|+||++|.|+++++|.+++|++++.||+++.|. +++||+++.|++++.| ++++||+++.|++
T Consensus 306 svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~ 385 (481)
T PRK14358 306 SVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGA 385 (481)
T ss_pred eEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceecCCcccCceEEECCeEEcCCceEcC
Confidence 999999999999999888888888888888885 6777777777775443 4466777777776
Q ss_pred CCc
Q 013012 443 LSL 445 (451)
Q Consensus 443 ~~~ 445 (451)
++.
T Consensus 386 ~~~ 388 (481)
T PRK14358 386 GTI 388 (481)
T ss_pred CEE
Confidence 653
No 18
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.9e-38 Score=321.99 Aligned_cols=344 Identities=17% Similarity=0.199 Sum_probs=230.7
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEE
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~ 82 (451)
+.|||||||.|+|| ....||+|+|++|+|||+|++++|.+.+++++++++++. .+.+.+++.+ ..+.++
T Consensus 6 ~~aiILAaG~gtR~----~~~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~--~~~i~~~~~~-----~~~~~v 74 (456)
T PRK14356 6 TGALILAAGKGTRM----HSDKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHR--ADMVRAAFPD-----EDARFV 74 (456)
T ss_pred eeEEEEcCCCCccC----CCCCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCC--HHHHHHhccc-----cCceEE
Confidence 78999999999999 557999999999999999999999999999999998754 3355555432 235677
Q ss_pred EcCCCCChHHHHHHHHhcCC---CCcEEEEcCCc--cCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccC
Q 013012 83 TVPEDVGTAGALRAIAHHLT---AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT 157 (451)
Q Consensus 83 ~~~~~~gt~~~l~~~~~~l~---~~~~lvl~~D~--i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 157 (451)
.++...||+++++.+++++. .+++++++||. +...++..+++.|+ +++++++....+
T Consensus 75 ~~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~---------------- 136 (456)
T PRK14356 75 LQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLP---------------- 136 (456)
T ss_pred EcCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcC----------------
Confidence 67777899999999988774 36799999994 66778899998876 455666655432
Q ss_pred CCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCcccc----cc
Q 013012 158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQ----SL 233 (451)
Q Consensus 158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~~~----s~ 233 (451)
.+..|+++.. ++++ +..+.+ |+. ..... ....++++++|+|+|++++|..+++...+.. ..
T Consensus 137 -~~~~~g~v~~-~~g~-V~~~~e-----k~~-~~~~~------~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ 201 (456)
T PRK14356 137 -DPGAYGRVVR-RNGH-VAAIVE-----AKD-YDEAL------HGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYY 201 (456)
T ss_pred -CCCCceEEEE-cCCe-EEEEEE-----CCC-CChHH------hhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEE
Confidence 2456787766 3454 444443 221 00000 0112468899999999999876654321111 11
Q ss_pred ccchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEEEeccchhh
Q 013012 234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC 313 (451)
Q Consensus 234 ~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (451)
-+|+++.+++.+ .++.+|......+|
T Consensus 202 ltd~i~~~~~~g------------------------------------------------------~~v~~~~~~~~~~~ 227 (456)
T PRK14356 202 ITDLVGLAVAEG------------------------------------------------------MNVLGVNCGEDPNL 227 (456)
T ss_pred HHHHHHHHHHCC------------------------------------------------------CeEEEEEcCCcCeE
Confidence 135555544322 12334422223357
Q ss_pred hhccCHHHHHHHchhcccccc--------cc--CCccccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEE
Q 013012 314 VRLNSIQAFMDINRDVIGEAN--------HL--SGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVI 383 (451)
Q Consensus 314 ~~i~~~~~y~~~~~~~l~~~~--------~~--~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svi 383 (451)
.+++++++|.+++..+..... .+ .....+++++.+++++.|.+++.+++++.||++|.|+++|.|++++|
T Consensus 228 ~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i 307 (456)
T PRK14356 228 LGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVV 307 (456)
T ss_pred ecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEE
Confidence 899999999987765433211 11 11223344555666666666666666778888888888888888888
Q ss_pred CCCCEECCCcEEeceEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-----------------ceEECCCCEECCCC
Q 013012 384 GRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-----------------DCQVLSLSTSVFLS 444 (451)
Q Consensus 384 g~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~-~~ii~~~~~i~~~~~i~-----------------~~~ig~~~~i~~~~ 444 (451)
|++|.|+++|.|.+++|++++.||+++.|. +++|++++.|++++.+. +|+||+++.|++++
T Consensus 308 ~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~~ 386 (456)
T PRK14356 308 SSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAGANIGAGT 386 (456)
T ss_pred CCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCcEecccccccCeEECCCCEECCCc
Confidence 888888888888888888887777777775 56666666666665444 45555566666554
No 19
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.3e-38 Score=321.44 Aligned_cols=345 Identities=19% Similarity=0.233 Sum_probs=234.0
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEE
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i 81 (451)
++.|||||||.|+||+| ..||+|+|++|+|||+|++++|.+++++++++++++. .+.+.+++.+.. ..+.+
T Consensus 4 ~~~avILAaG~gtRm~~----~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~--~~~i~~~~~~~~---~~~~~ 74 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRS----DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHD--RERVAPAVAELA---PEVDI 74 (482)
T ss_pred CceEEEEcCCCCCcCCC----CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCC--HHHHHHHhhccC---CccEE
Confidence 36899999999999954 5899999999999999999999999999999999865 235666654321 12445
Q ss_pred EEcCCCCChHHHHHHHHhcCCC---CcEEEEcCC--ccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCccc
Q 013012 82 ATVPEDVGTAGALRAIAHHLTA---KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (451)
Q Consensus 82 ~~~~~~~gt~~~l~~~~~~l~~---~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 156 (451)
+.++...|++++++.+++++.. ++++|++|| ++...++.++++.|++.++.++++.....
T Consensus 75 ~~~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~--------------- 139 (482)
T PRK14352 75 AVQDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLD--------------- 139 (482)
T ss_pred EeCCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecC---------------
Confidence 5566678999999999888742 569999999 45677899999999888877776654321
Q ss_pred CCCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCccc----cc
Q 013012 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKF----QS 232 (451)
Q Consensus 157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~~----~s 232 (451)
.+..|+.+..|++++ +..+.+ |+...+. +...+++++|+|+|++++|..+++..... ..
T Consensus 140 --~p~~yg~~~~~~~g~-V~~~~E-----Kp~~~~~---------~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~ 202 (482)
T PRK14352 140 --DPTGYGRILRDQDGE-VTAIVE-----QKDATPS---------QRAIREVNSGVYAFDAAVLRSALARLSSDNAQGEL 202 (482)
T ss_pred --CCCCCCEEEECCCCC-EEEEEE-----CCCCCHH---------HhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcE
Confidence 255788888887776 445543 3211000 11245789999999999987665432110 11
Q ss_pred cccchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEEEeccchh
Q 013012 233 LKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY 312 (451)
Q Consensus 233 ~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (451)
.-.|+++++++++ .++++| +..+|
T Consensus 203 ~l~d~i~~l~~~g------------------------------------------------------~~V~~~--~~~g~ 226 (482)
T PRK14352 203 YLTDVLAIAREAG------------------------------------------------------HRVGAH--HADDS 226 (482)
T ss_pred eHHHHHHHHHHCC------------------------------------------------------CeEEEE--ecCCc
Confidence 1246676666543 123444 45678
Q ss_pred hhhccCHHHH------HHHchhccccc----ccc--CCccccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEec
Q 013012 313 CVRLNSIQAF------MDINRDVIGEA----NHL--SGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR 380 (451)
Q Consensus 313 ~~~i~~~~~y------~~~~~~~l~~~----~~~--~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~ 380 (451)
|.++++++.| ..+++.++... ..+ ....++.++++|++++.|++++.|+++++||++|.|+++|.|++
T Consensus 227 w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~ 306 (482)
T PRK14352 227 AEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTD 306 (482)
T ss_pred ceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEec
Confidence 9988877766 44444443321 111 11235567778888888888888888888888888888888887
Q ss_pred eEECCCCEECCCcEEeceEECCCCEECCCcEE------------------eCeEECCCCEECCCcEEcceEECCCCEECC
Q 013012 381 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI------------------QGSVICSNAQLQERVALKDCQVLSLSTSVF 442 (451)
Q Consensus 381 svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i------------------~~~ii~~~~~i~~~~~i~~~~ig~~~~i~~ 442 (451)
++||++|.|++ +++.+++|++++.||+++.+ .+++|++++.|++.+.+++++||+++.|++
T Consensus 307 ~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~ 385 (482)
T PRK14352 307 VTVGEGASVVR-THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGA 385 (482)
T ss_pred CEECCCCEEee-eeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCcEEccCceecccEECCCcEECC
Confidence 77777766643 44555555555555544444 345555556665555566677777777777
Q ss_pred CC
Q 013012 443 LS 444 (451)
Q Consensus 443 ~~ 444 (451)
++
T Consensus 386 ~~ 387 (482)
T PRK14352 386 SS 387 (482)
T ss_pred Cc
Confidence 65
No 20
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5.8e-38 Score=318.08 Aligned_cols=344 Identities=15% Similarity=0.211 Sum_probs=220.0
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeE
Q 013012 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (451)
Q Consensus 1 m~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (451)
|+++|||||||.|+||+ ...||+|+|++|+|||+|+++.|..++++++++++++. .+.+++++.. .++.
T Consensus 4 ~~~~aiIlAaG~gtRl~----~~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~--~~~i~~~~~~-----~~~~ 72 (456)
T PRK09451 4 SAMSVVILAAGKGTRMY----SDLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHG--GDLLKQTLAD-----EPLN 72 (456)
T ss_pred CCceEEEEcCCCCCcCC----CCCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCC--HHHHHHhhcc-----CCcE
Confidence 36899999999999995 46899999999999999999999999999999999864 3456665532 2356
Q ss_pred EEEcCCCCChHHHHHHHHhcCC-CCcEEEEcCCc--cCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccC
Q 013012 81 VATVPEDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT 157 (451)
Q Consensus 81 i~~~~~~~gt~~~l~~~~~~l~-~~~~lvl~~D~--i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 157 (451)
++.+++..||+++++.+++++. ++++++++||. +.+.++..+++.|.+.+ +++++.+. +
T Consensus 73 ~i~~~~~~Gt~~al~~a~~~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~--~-------------- 134 (456)
T PRK09451 73 WVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKL--D-------------- 134 (456)
T ss_pred EEECCCCCCcHHHHHHHHHhhccCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEc--C--------------
Confidence 6667777999999999988774 35799999994 67788999998886554 33343322 1
Q ss_pred CCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCcc----cccc
Q 013012 158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK----FQSL 233 (451)
Q Consensus 158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~----~~s~ 233 (451)
++.+||++. +++++ +..+.+ |+...+. ...++++++|+|+|+++.|..+++.... .+..
T Consensus 135 -~~~~yG~v~-~~~g~-V~~~~E-----Kp~~~~~---------~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~ 197 (456)
T PRK09451 135 -NPTGYGRIT-RENGK-VVGIVE-----QKDATDE---------QRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYY 197 (456)
T ss_pred -CCCCceEEE-ecCCe-EEEEEE-----CCCCChH---------HhhccEEEEEEEEEEHHHHHHHHHhcCCccccCcee
Confidence 245688864 44554 555653 3210000 1124678999999999988766543211 1112
Q ss_pred ccchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEEEe----cc
Q 013012 234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIA----SN 309 (451)
Q Consensus 234 ~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 309 (451)
-+|+++.+++++.. +..|.. ..
T Consensus 198 l~d~i~~~i~~g~~------------------------------------------------------v~~~~~~~~~~~ 223 (456)
T PRK09451 198 ITDIIALAHQEGRE------------------------------------------------------IVAVHPQRLSEV 223 (456)
T ss_pred HHHHHHHHHHCCCe------------------------------------------------------EEEEecCCHHHh
Confidence 25888887765421 222210 01
Q ss_pred chh--hhhccCHHHHHHHch--hcccccccc-CC-ccccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEE
Q 013012 310 SKY--CVRLNSIQAFMDINR--DVIGEANHL-SG-YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVI 383 (451)
Q Consensus 310 ~~~--~~~i~~~~~y~~~~~--~~l~~~~~~-~~-~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svi 383 (451)
.+| |.+++++++|+++++ .++.....+ .+ .....+...+++++.|++++.|.+++.||++|.|+++|.|++|+|
T Consensus 224 ~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~i 303 (456)
T PRK09451 224 EGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVI 303 (456)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEE
Confidence 234 678999999999874 232211111 00 011123344555666666666655666666666666666666666
Q ss_pred CCCCEECCCcEEeceEECCCCEECCCcEEe-CeEECCCC-----------------EECCCcEEcceEECCCCEECCCC
Q 013012 384 GRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNA-----------------QLQERVALKDCQVLSLSTSVFLS 444 (451)
Q Consensus 384 g~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~-~~ii~~~~-----------------~i~~~~~i~~~~ig~~~~i~~~~ 444 (451)
|++|.|++++.|.+|+|+++++||+++.|. ++.|++++ .++..+.+++|.||+++.|++++
T Consensus 304 g~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~ 382 (456)
T PRK09451 304 GDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGT 382 (456)
T ss_pred cCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCCCccCccccccccEECCCCEEcCCe
Confidence 666666666666666666666666555553 44444444 44444445556777777777665
No 21
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=7.1e-37 Score=309.70 Aligned_cols=344 Identities=17% Similarity=0.205 Sum_probs=217.1
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeE
Q 013012 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (451)
Q Consensus 1 m~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (451)
|++.|||||||.|+||+ ...||+|+|++|||||+|+++++.++++++++|++++. .+.+.+++.+.. ..+.
T Consensus 4 ~~~~aiILAaG~gsR~~----~~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~--~~~i~~~~~~~~---~~~~ 74 (446)
T PRK14353 4 RTCLAIILAAGEGTRMK----SSLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPG--AEAVAAAAAKIA---PDAE 74 (446)
T ss_pred ccceEEEEcCCCCCccC----CCCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCC--HHHHHHHhhccC---CCce
Confidence 35799999999999994 45799999999999999999999999999999999864 345666654321 1234
Q ss_pred EEEcCCCCChHHHHHHHHhcCC--CCcEEEEcCCc--cCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCccc
Q 013012 81 VATVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (451)
Q Consensus 81 i~~~~~~~gt~~~l~~~~~~l~--~~~~lvl~~D~--i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 156 (451)
+.......|++++++.+++++. ++++++++||. +...++..+++.+ +.+++++++..+..
T Consensus 75 ~~~~~~~~G~~~sl~~a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~-~~~~~~~i~~~~~~--------------- 138 (446)
T PRK14353 75 IFVQKERLGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETLARLRERL-ADGADVVVLGFRAA--------------- 138 (446)
T ss_pred EEEcCCCCCcHHHHHHHHHHHhccCCCEEEEeCCcccCCHHHHHHHHHhH-hcCCcEEEEEEEeC---------------
Confidence 4555667899999999988773 46799999994 5566788888744 44566666654421
Q ss_pred CCCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCcc----ccc
Q 013012 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK----FQS 232 (451)
Q Consensus 157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~----~~s 232 (451)
.+..|+.+.. ++++ +..+.+ |+...+. +..+.+.++|+|+|+++.|..+++.... ...
T Consensus 139 --~~~~~g~~~~-~~g~-v~~~~e-----k~~~~~~---------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~ 200 (446)
T PRK14353 139 --DPTGYGRLIV-KGGR-LVAIVE-----EKDASDE---------ERAITLCNSGVMAADGADALALLDRVGNDNAKGEY 200 (446)
T ss_pred --CCCcceEEEE-CCCe-EEEEEE-----CCCCChH---------HhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcE
Confidence 2446777766 3444 445543 3211000 1113578899999999876545443211 000
Q ss_pred cccchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEEEeccchh
Q 013012 233 LKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY 312 (451)
Q Consensus 233 ~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (451)
.-.|.++.+++.+ .++..|.. ...+
T Consensus 201 ~~~d~~~~l~~~g------------------------------------------------------~~v~~~~~-~~~~ 225 (446)
T PRK14353 201 YLTDIVAIARAEG------------------------------------------------------LRVAVVEA-PEDE 225 (446)
T ss_pred eHHHHHHHHHHCC------------------------------------------------------CeEEEEec-Chhh
Confidence 1134455554432 22334422 2356
Q ss_pred hhhccCHHHHHHHchhc---------cccccccCC-ccccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceE
Q 013012 313 CVRLNSIQAFMDINRDV---------IGEANHLSG-YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSV 382 (451)
Q Consensus 313 ~~~i~~~~~y~~~~~~~---------l~~~~~~~~-~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~sv 382 (451)
|.+++++++|..++..+ +.....+.+ ..++++...|++++.|++++.|++++.||++|.|++++.|.+++
T Consensus 226 ~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~ 305 (446)
T PRK14353 226 VRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAH 305 (446)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccE
Confidence 99999999998777432 211000111 12334456666666666667777777777777777777666777
Q ss_pred ECCCCEECCCcEEe-ceEECCCCEECCCcEEeCeEECCCCEECCCcEEcceEECCCCEECC
Q 013012 383 IGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVLSLSTSVF 442 (451)
Q Consensus 383 ig~~~~ig~~~~i~-~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~~~ig~~~~i~~ 442 (451)
||++|.||+++.|. +|+|++++.||+++.|.+++|++++.++..+.+.+++||+++.|++
T Consensus 306 Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~Ig~ 366 (446)
T PRK14353 306 VGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIGAGANIGA 366 (446)
T ss_pred ECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEEcCCcEECC
Confidence 77777777777776 6777777777777766655555554444444443334444443333
No 22
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=8.2e-37 Score=310.09 Aligned_cols=342 Identities=20% Similarity=0.271 Sum_probs=231.8
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEE
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~ 82 (451)
|+|||||||.|+||+| ..||+|+|++|+|||+|+++++.++|++++++++++. .+.+.+++.++ ++.+.
T Consensus 1 m~aiIlAaG~g~R~~~----~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~--~~~i~~~~~~~-----~i~~~ 69 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS----DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHG--AEQVRKALANR-----DVNWV 69 (451)
T ss_pred CeEEEEcCCCCcccCC----CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCC--HHHHHHHhcCC-----CcEEE
Confidence 6899999999999964 5899999999999999999999999999999999865 34566665432 35565
Q ss_pred EcCCCCChHHHHHHHHhcCCC-CcEEEEcCCc--cCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccCCC
Q 013012 83 TVPEDVGTAGALRAIAHHLTA-KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK 159 (451)
Q Consensus 83 ~~~~~~gt~~~l~~~~~~l~~-~~~lvl~~D~--i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
.+++..|++++++.+++++.+ ++|+++.||. +.+.++..+++.|.+.+ +++++...+ .
T Consensus 70 ~~~~~~G~~~ai~~a~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~~--~~~~~~~~~-----------------~ 130 (451)
T TIGR01173 70 LQAEQLGTGHAVLQALPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQNG--ITLLTAKLP-----------------D 130 (451)
T ss_pred EcCCCCchHHHHHHHHHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhhCC--EEEEEEecC-----------------C
Confidence 566678999999999998853 5799999994 66778999999887643 455544321 1
Q ss_pred CCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCccc----ccccc
Q 013012 160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKF----QSLKQ 235 (451)
Q Consensus 160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~~----~s~~~ 235 (451)
+..|+.+..|+++++ ..+.+ |+..-+. ....+++++|+|+|++++|..+++...+. +-.-.
T Consensus 131 ~~~~g~v~~d~~g~v-~~~~e-----k~~~~~~---------~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~ 195 (451)
T TIGR01173 131 PTGYGRIIRENDGKV-TAIVE-----DKDANAE---------QKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLT 195 (451)
T ss_pred CCCCCEEEEcCCCCE-EEEEE-----cCCCChH---------HhcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHH
Confidence 345788888877664 44442 2210000 00134688999999999875554432110 00113
Q ss_pred chhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEEEeccchh--h
Q 013012 236 DVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY--C 313 (451)
Q Consensus 236 d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 313 (451)
++++.+++++ .++..|. ..++ |
T Consensus 196 ~~~~~l~~~g------------------------------------------------------~~v~~~~--~~~~~~~ 219 (451)
T TIGR01173 196 DVIALAVADG------------------------------------------------------ETVRAVQ--VDDSDEV 219 (451)
T ss_pred HHHHHHHHCC------------------------------------------------------CeEEEEE--cCChhhe
Confidence 5555555432 1233442 2344 7
Q ss_pred hhccCHHHHHHHchhcccc--------cccc--CCccccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEE
Q 013012 314 VRLNSIQAFMDINRDVIGE--------ANHL--SGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVI 383 (451)
Q Consensus 314 ~~i~~~~~y~~~~~~~l~~--------~~~~--~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svi 383 (451)
.+++++++|..++..+... ...+ .....+.+++.+++++.|++++.|++++.||++|.|+++|.|++++|
T Consensus 220 ~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i 299 (451)
T TIGR01173 220 LGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVI 299 (451)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEe
Confidence 7888888887665433211 1111 11223456677788888888888888888888888888888888888
Q ss_pred CCCCEECCCcEEeceEECCCCEECCCcEEe-CeEECCCCEECCCcE-----------------EcceEECCCCEECCCCc
Q 013012 384 GRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVA-----------------LKDCQVLSLSTSVFLSL 445 (451)
Q Consensus 384 g~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~-~~ii~~~~~i~~~~~-----------------i~~~~ig~~~~i~~~~~ 445 (451)
|++|.|+++|+|.+++|++++.||+++.|. +++|++++.|++++. +++|.||+++.|++++.
T Consensus 300 ~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~ 379 (451)
T TIGR01173 300 GSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTI 379 (451)
T ss_pred cCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCCcEecceeeEeeeEEcCCcEECCCeE
Confidence 888888888888877777777777777775 466666666665543 33466666666666653
No 23
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.7e-36 Score=306.55 Aligned_cols=346 Identities=19% Similarity=0.269 Sum_probs=215.2
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeE
Q 013012 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (451)
Q Consensus 1 m~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (451)
|+++|||||||.|+||+ ..+||+|+|++|+|||+|+|++|.+++++++++++++. .+.+.+++.+ .+.
T Consensus 1 m~~~avIlAaG~g~Rl~----~~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~--~~~i~~~~~~------~~~ 68 (458)
T PRK14354 1 MNRYAIILAAGKGTRMK----SKLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHG--AEEVKEVLGD------RSE 68 (458)
T ss_pred CCceEEEEeCCCCcccC----CCCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCC--HHHHHHHhcC------CcE
Confidence 89999999999999994 46899999999999999999999999999999998865 3456665532 134
Q ss_pred EEEcCCCCChHHHHHHHHhcCCC--CcEEEEcCC--ccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCccc
Q 013012 81 VATVPEDVGTAGALRAIAHHLTA--KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (451)
Q Consensus 81 i~~~~~~~gt~~~l~~~~~~l~~--~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 156 (451)
++..++..|++++++.+++++.. ++++++.|| ++.+.++..+++.|++.++++++++...+
T Consensus 69 ~~~~~~~~g~~~al~~a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~--------------- 133 (458)
T PRK14354 69 FALQEEQLGTGHAVMQAEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAE--------------- 133 (458)
T ss_pred EEEcCCCCCHHHHHHHHHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcC---------------
Confidence 55566678999999999888753 569999999 56777899999999887777777665432
Q ss_pred CCCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCcc----ccc
Q 013012 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK----FQS 232 (451)
Q Consensus 157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~----~~s 232 (451)
.+..|+.+..|+++++ ..+. ||+...+. ....+++++|+|+|+++.|...+++... ...
T Consensus 134 --~~~~~g~v~~d~~~~V-~~~~-----ek~~~~~~---------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~ 196 (458)
T PRK14354 134 --NPTGYGRIIRNENGEV-EKIV-----EQKDATEE---------EKQIKEINTGTYCFDNKALFEALKKISNDNAQGEY 196 (458)
T ss_pred --CCCCceEEEEcCCCCE-EEEE-----ECCCCChH---------HhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcE
Confidence 1345787778877664 4444 22210000 1123578999999999865444432110 000
Q ss_pred cccchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEEEeccchh
Q 013012 233 LKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY 312 (451)
Q Consensus 233 ~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (451)
.-+|+++.+++.+ .++.+|.......
T Consensus 197 ~~~d~~~~l~~~g------------------------------------------------------~~v~~~~~~g~~~ 222 (458)
T PRK14354 197 YLTDVIEILKNEG------------------------------------------------------EKVGAYQTEDFEE 222 (458)
T ss_pred eHHHHHHHHHHCC------------------------------------------------------CeEEEEecCCcce
Confidence 1135555544332 1233442221122
Q ss_pred hhhccCHHHHHHHchhcccc--------ccc-cCC-ccccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceE
Q 013012 313 CVRLNSIQAFMDINRDVIGE--------ANH-LSG-YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSV 382 (451)
Q Consensus 313 ~~~i~~~~~y~~~~~~~l~~--------~~~-~~~-~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~sv 382 (451)
|.++++++++..++..+... ... +.. ..++++++.|++++.|++++.|++++.||++|.|++++.|.+++
T Consensus 223 ~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ 302 (458)
T PRK14354 223 SLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDST 302 (458)
T ss_pred EEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccE
Confidence 34566777776655422110 000 111 12344455566666666666666666777777777777776666
Q ss_pred ECCCCEEC----------------CCcEEe-ceEECCCCEECCCcEEeCeEECCCCEECCCcEEcceEECCCCEECCCC
Q 013012 383 IGRHCRIG----------------SNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVLSLSTSVFLS 444 (451)
Q Consensus 383 ig~~~~ig----------------~~~~i~-~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~~~ig~~~~i~~~~ 444 (451)
||++|.|+ ++|.|. +++|+++++|++++.|.+++|++++.+++.+.+++++||.++.|++++
T Consensus 303 ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~ 381 (458)
T PRK14354 303 IGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGT 381 (458)
T ss_pred ECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCce
Confidence 65555554 444443 344444444444444444555555555555555556666666666654
No 24
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=7.3e-36 Score=301.10 Aligned_cols=343 Identities=16% Similarity=0.220 Sum_probs=203.5
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeE
Q 013012 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (451)
Q Consensus 1 m~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (451)
|+++|||||||.|+||+ ..+||+|+|++|+|||+|+++.|.++ +++++|++++. .+.+.+++.+.+. ++.
T Consensus 1 m~~~aiIlAaG~GtRl~----~~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~--~~~i~~~~~~~~~---~v~ 70 (430)
T PRK14359 1 MKLSIIILAAGKGTRMK----SSLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQ--KERIKEAVLEYFP---GVI 70 (430)
T ss_pred CCccEEEEcCCCCccCC----CCCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCC--HHHHHHHHHhcCC---ceE
Confidence 89999999999999995 36899999999999999999999987 78899988765 4567777654321 356
Q ss_pred EEEcCC--CCChHHHHHHHHhcCCCCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccCC
Q 013012 81 VATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (451)
Q Consensus 81 i~~~~~--~~gt~~~l~~~~~~l~~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 158 (451)
++.+++ ..||+++++.+.. ..++|++++||.... ..+.++.+.+.++++++++...+
T Consensus 71 ~~~~~~~~~~gt~~al~~~~~--~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~----------------- 129 (430)
T PRK14359 71 FHTQDLENYPGTGGALMGIEP--KHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLA----------------- 129 (430)
T ss_pred EEEecCccCCCcHHHHhhccc--CCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcC-----------------
Confidence 665543 4799999977432 257899999995221 23455666666677776665432
Q ss_pred CCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCcc----ccccc
Q 013012 159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK----FQSLK 234 (451)
Q Consensus 159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~----~~s~~ 234 (451)
++..|+.+..| +++ +..+.+ ++.. + .....++++++|+|+|++++|..+++.... ....-
T Consensus 130 ~~~~~g~v~~d-~g~-v~~i~e-----~~~~-~--------~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l 193 (430)
T PRK14359 130 DPKGYGRVVIE-NGQ-VKKIVE-----QKDA-N--------EEELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYL 193 (430)
T ss_pred CCccCcEEEEc-CCe-EEEEEE-----CCCC-C--------cccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceeh
Confidence 13457877665 344 444442 2210 0 001124678999999999999866543211 11111
Q ss_pred cchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEEEeccchhhh
Q 013012 235 QDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCV 314 (451)
Q Consensus 235 ~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (451)
+|+++.+++.+ .++..|.. ...+|.
T Consensus 194 ~d~i~~l~~~g------------------------------------------------------~~v~~~~~-~~~~w~ 218 (430)
T PRK14359 194 TDIIALAIEKG------------------------------------------------------ETIKAVFV-DEENFM 218 (430)
T ss_pred hhHHHHHHHcC------------------------------------------------------CeEEEEEc-CCCEEe
Confidence 34555444332 23444432 246899
Q ss_pred hccCHHHHHHHchhcccccc----------------ccCCccccCCCceeCCCCeeCCCcEECCCCEEC-----------
Q 013012 315 RLNSIQAFMDINRDVIGEAN----------------HLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLG----------- 367 (451)
Q Consensus 315 ~i~~~~~y~~~~~~~l~~~~----------------~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~----------- 367 (451)
+++++++|..++..+..+.. .+.....+.+++.+++++.|++++.++ ++.|+
T Consensus 219 dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~i~ 297 (430)
T PRK14359 219 GVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIE-NSHIKAHSVIEESIIE 297 (430)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEE-eeEECCCCEEeccEEe
Confidence 99999999998754432110 011111222233333444443333222 22333
Q ss_pred -----CCCEECCCCEEeceEECCCC----------EECCCcEEeceEECCCCEECCCcEEe--------CeEECCCCEEC
Q 013012 368 -----EGSQMGDKCSVKRSVIGRHC----------RIGSNVKVVNSVVMNHVTIGDGCSIQ--------GSVICSNAQLQ 424 (451)
Q Consensus 368 -----~~~~i~~~~~i~~svig~~~----------~ig~~~~i~~s~i~~~~~Ig~~~~i~--------~~ii~~~~~i~ 424 (451)
++|.|++++.|++|+||++| .||+++.|.+|+|+++|.||.++.+. .++||+++.||
T Consensus 298 ~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig 377 (430)
T PRK14359 298 NSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIG 377 (430)
T ss_pred CCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEc
Confidence 33333333333333333333 34444445555666666666665553 25677777777
Q ss_pred CCcEEc-ceEECCCCEECCCCcc
Q 013012 425 ERVALK-DCQVLSLSTSVFLSLS 446 (451)
Q Consensus 425 ~~~~i~-~~~ig~~~~i~~~~~~ 446 (451)
.++.|. ++.||++++|++++..
T Consensus 378 ~~~~i~~~~~ig~~~~i~~g~~v 400 (430)
T PRK14359 378 SDTQLVAPVNIEDNVLIAAGSTV 400 (430)
T ss_pred CCCEEeCCcEECCCCEECCCCEE
Confidence 777666 4777777777777643
No 25
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.9e-35 Score=297.15 Aligned_cols=176 Identities=23% Similarity=0.407 Sum_probs=131.6
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEE
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~ 82 (451)
|+|||||||.|+||+ ...||+|+|++|+|||+|+|+++.+.+ ++++|++++.. +.+.+++.+ .+.++
T Consensus 1 m~avIlA~G~gtRl~----~~~pK~l~~v~gkpli~~~l~~l~~~~-~~i~vv~~~~~--~~i~~~~~~------~~~~~ 67 (448)
T PRK14357 1 MRALVLAAGKGTRMK----SKIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEA--ELVKKLLPE------WVKIF 67 (448)
T ss_pred CeEEEECCCCCccCC----CCCCceeeEECCeeHHHHHHHHHHhcC-CcEEEEeCCCH--HHHHHhccc------ccEEE
Confidence 689999999999994 468999999999999999999999874 88999887542 455555432 24555
Q ss_pred EcCCCCChHHHHHHHHhcCC-CCcEEEEcCC--ccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccCCC
Q 013012 83 TVPEDVGTAGALRAIAHHLT-AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK 159 (451)
Q Consensus 83 ~~~~~~gt~~~l~~~~~~l~-~~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
.++...|++++++.+++++. +++|++++|| ++.+.++.++++.|++.++++++++.+.. .
T Consensus 68 ~~~~~~g~~~ai~~a~~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~-----------------~ 130 (448)
T PRK14357 68 LQEEQLGTAHAVMCARDFIEPGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE-----------------D 130 (448)
T ss_pred ecCCCCChHHHHHHHHHhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC-----------------C
Confidence 56677899999999998885 4679999999 47778899999999888888888876542 2
Q ss_pred CCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHh
Q 013012 160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (451)
Q Consensus 160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~ 225 (451)
+..|+++.+| +++ + .+. ||+.. +.. ....+++++|+|+|++++|..+++
T Consensus 131 ~~~~g~v~~d-~g~-v-~~~-----e~~~~-~~~--------~~~~~~~~~GiYv~~~~~l~~~~~ 179 (448)
T PRK14357 131 PTGYGRIIRD-GGK-Y-RIV-----EDKDA-PEE--------EKKIKEINTGIYVFSGDFLLEVLP 179 (448)
T ss_pred CCCcEEEEEc-CCe-E-EEE-----ECCCC-ChH--------HhcCcEEEeEEEEEEHHHHHHHHH
Confidence 5578888777 444 3 332 22210 000 001257899999999998766544
No 26
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.2e-34 Score=291.96 Aligned_cols=182 Identities=24% Similarity=0.358 Sum_probs=136.9
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEE
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~ 82 (451)
+.+||||||.|+||+ ...||+|+|++|+|||+|+|++|.++++.+++|++++.. +.+.+++.+. .++.++
T Consensus 2 ~~~iIlAaG~gsR~~----~~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~--~~i~~~~~~~----~~i~~v 71 (450)
T PRK14360 2 LAVAILAAGKGTRMK----SSLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQA--EEVEQSLAHL----PGLEFV 71 (450)
T ss_pred ceEEEEeCCCCccCC----CCCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCH--HHHHHHhccc----CCeEEE
Confidence 789999999999994 468999999999999999999999999999999998652 3566655431 135666
Q ss_pred EcCCCCChHHHHHHHHhcCC--CCcEEEEcCCc--cCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccCC
Q 013012 83 TVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (451)
Q Consensus 83 ~~~~~~gt~~~l~~~~~~l~--~~~~lvl~~D~--i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 158 (451)
.++...|++++++.+++++. +++++|+.||. +.+.++..+++.|++.++.++++.....
T Consensus 72 ~~~~~~G~~~sv~~~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~----------------- 134 (450)
T PRK14360 72 EQQPQLGTGHAVQQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLP----------------- 134 (450)
T ss_pred EeCCcCCcHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecC-----------------
Confidence 66667899999999888774 35699999994 6778999999999988888877655322
Q ss_pred CCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhc
Q 013012 159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ 226 (451)
Q Consensus 159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~ 226 (451)
.+..|+.+.+|+++++ ..+.+ |+...+ ....++++++|+|+|+++.|..++++
T Consensus 135 ~~~~~g~~~~d~~g~v-~~~~e-----k~~~~~---------~~~~~~~~~~Giy~f~~~~l~~~~~~ 187 (450)
T PRK14360 135 NPKGYGRVFCDGNNLV-EQIVE-----DRDCTP---------AQRQNNRINAGIYCFNWPALAEVLPK 187 (450)
T ss_pred CCCCccEEEECCCCCE-EEEEE-----CCCCCh---------hHhcCcEEEEEEEEEEHHHHHHHHhh
Confidence 2446888888887764 44442 321000 01135689999999999888776543
No 27
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.6e-36 Score=266.20 Aligned_cols=282 Identities=21% Similarity=0.308 Sum_probs=206.0
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEE
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~ 82 (451)
|++||||||.||||+|+ |...||+|+||.+||||+|+|+.|..+|+++|.|++++++ ...+++++.+......++++.
T Consensus 1 mKgiILAgG~GTRL~Pl-T~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~-~~~~~~llGdgs~~gv~itY~ 78 (286)
T COG1209 1 MKGVILAGGSGTRLRPL-TRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPED-KPTFKELLGDGSDFGVDITYA 78 (286)
T ss_pred CCcEEecCcCccccccc-cccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCc-hhhhhhhhcCccccCcceEEE
Confidence 68999999999999999 9999999999999999999999999999999999998654 346666665522223467888
Q ss_pred EcCCCCChHHHHHHHHhcCCCCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccCCCCCc
Q 013012 83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR 162 (451)
Q Consensus 83 ~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (451)
.|+++.|.++|+..+.+++.+++|+++.||.++..++.++++.+.+.+..+++++.++. +|++
T Consensus 79 ~Q~~p~GlA~Av~~a~~fv~~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~-----------------dP~r 141 (286)
T COG1209 79 VQPEPDGLAHAVLIAEDFVGDDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD-----------------DPSR 141 (286)
T ss_pred ecCCCCcHHHHHHHHHhhcCCCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC-----------------Cccc
Confidence 89999999999999999998899999999966655999999999988888899988764 3789
Q ss_pred ccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCcccc-cc-ccchhhH
Q 013012 163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQ-SL-KQDVLPY 240 (451)
Q Consensus 163 ~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~~~-s~-~~d~lp~ 240 (451)
||++++|++++ +..+. |||. .+.|||+-+|+|+|++.+++.+-.-.++.. .+ -+|.+.+
T Consensus 142 fGV~e~d~~~~-v~~l~-----EKP~-------------~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~ 202 (286)
T COG1209 142 YGVVEFDEDGK-VIGLE-----EKPK-------------EPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDL 202 (286)
T ss_pred ceEEEEcCCCc-EEEeE-----ECCC-------------CCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEehHHHHH
Confidence 99999998885 45554 5543 456899999999999999975532222111 01 1466666
Q ss_pred HHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEEEeccchhhhhccCHH
Q 013012 241 LVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQ 320 (451)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 320 (451)
++.++.. .. ++ ...++|.+.++++
T Consensus 203 ~i~~G~~------------------------------------------------------~~-~~-~~~G~WlDtGt~~ 226 (286)
T COG1209 203 YIEKGYL------------------------------------------------------VV-AI-LIRGWWLDTGTPE 226 (286)
T ss_pred HHHcCcE------------------------------------------------------EE-EE-EccceEEecCChh
Confidence 6655421 11 11 2245999999999
Q ss_pred HHHHHchhccccccccCCccccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCC
Q 013012 321 AFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSN 392 (451)
Q Consensus 321 ~y~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~ 392 (451)
+++++++.+.... ... +...+.+.+ .+. +++|-.-+.++..+.|++|-+|+...++.+
T Consensus 227 slleA~~~i~~~~-~~~------G~~~~~~~~------~~~-~~~i~~~~~~~~~~~l~~~~~G~y~~~~~~ 284 (286)
T COG1209 227 SLLEANNFVRTVS-KRQ------GFKIACPEE------IAW-NGWIDGPGLIGLASQLEKSGYGQYLLELLR 284 (286)
T ss_pred hHHHHHHHHHHHH-hhc------CCEEeChhH------EEE-ecEEechHhhccccchhhcCcchhhhhhhc
Confidence 9999999775421 111 122233333 222 444444445555555555666666655543
No 28
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=3.1e-32 Score=257.78 Aligned_cols=234 Identities=15% Similarity=0.312 Sum_probs=172.6
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhc--------
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-------- 73 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~-------- 73 (451)
+|+|||||||.||||+|+ |...||||+||+|||||+|+++++..+|+++|+|++++. .+.+.+|+...+
T Consensus 3 ~mkavILAaG~GTRL~Pl-T~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~--~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPA-TKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHAS--KNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred ceEEEEECCCCCcccCcc-cCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCC--hHHHHHHHhchHHHHHHHHH
Confidence 589999999999999999 999999999999999999999999999999999999875 346777664321
Q ss_pred --------------cCceeeEEEEcCCCCChHHHHHHHHhcCCCCcEEEEcCCccCC--------CCchHHHHHHHhcCc
Q 013012 74 --------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD--------VPPGAVTAAHRRHDA 131 (451)
Q Consensus 74 --------------~~~~~~~i~~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D~i~~--------~~~~~~l~~~~~~~~ 131 (451)
.....+.++.++++.||+++++++.+++.+++|+|+.||.+++ .++..+++.|.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~ 159 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGR 159 (297)
T ss_pred hcchhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhCCCCEEEEECCeeccccccccchhHHHHHHHHHHHhCC
Confidence 0122466677888899999999999999767899999997775 488999999987776
Q ss_pred eEEEEEeeeccCCCccCCCCCCcccCCCCCcccEEEec----CCCce--EEEeeccccccccccccHHHHhhcCeeEEec
Q 013012 132 VVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD----PTKQF--LLHIATGAELEKDTRIRKSILRAVGQMDIRA 205 (451)
Q Consensus 132 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d----~~~~~--l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s 205 (451)
.++++. .++ + .+.+||++.+| +++.+ +..+. ||+... ....+
T Consensus 160 ~~~~~~-~~~-~---------------~~~~yGvv~~~~~~d~~g~v~~I~~~~-----EKP~~~----------~~~~s 207 (297)
T TIGR01105 160 SQVLAK-RMP-G---------------DLSEYSVIQTKEPLDREGKVSRIVEFI-----EKPDQP----------QTLDS 207 (297)
T ss_pred cEEEEE-EcC-C---------------CCccceEEEecccccCCCCeeeEeEEE-----ECCCCc----------ccCCc
Confidence 664443 221 1 25689999984 34542 33443 444210 01246
Q ss_pred CCccceEEeechHHHHHHHhcCccccccc----cchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCC
Q 013012 206 DLMDAHMYAFNRSVLQEVLDQKDKFQSLK----QDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS 281 (451)
Q Consensus 206 ~l~~~giYi~~~~~l~~~~~~~~~~~s~~----~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (451)
+++++|+|+|++++|..+ +... ..+.+ +|+++.+++++
T Consensus 208 ~~~~~GiYi~~~~i~~~l-~~~~-~~~~ge~~ltd~i~~l~~~~------------------------------------ 249 (297)
T TIGR01105 208 DLMAVGRYVLSADIWAEL-ERTE-PGAWGRIQLTDAIAELAKKQ------------------------------------ 249 (297)
T ss_pred CEEEEEEEEECHHHHHHH-hcCC-CCCCCeeeHHHHHHHHHhcC------------------------------------
Confidence 899999999999999865 3321 11112 36777666432
Q ss_pred ccccccCCCCCCCCCCCcceeEEEEeccchhhhhccCHHHHHHHchhc
Q 013012 282 FHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV 329 (451)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~y~~~~~~~ 329 (451)
++++|. ..++|.+++++++|.+++.++
T Consensus 250 -------------------~v~~~~--~~g~w~DiG~p~~~~~a~~~~ 276 (297)
T TIGR01105 250 -------------------SVDAML--MTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred -------------------CEEEEE--eccEEECCCCHHHHHHHHHHH
Confidence 234443 367899999999999998875
No 29
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=1.2e-32 Score=257.12 Aligned_cols=239 Identities=28% Similarity=0.547 Sum_probs=179.4
Q ss_pred eEEEEecCCCCCCCCCCCCCCcccccccCCc-chHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEE
Q 013012 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (451)
Q Consensus 4 ~avIlAgG~g~Rl~pl~~~~~pK~llpv~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~ 82 (451)
+|||||||.|+||+|+ |...||||+|++|+ |||+|+|++|.++|++++++++.++. .+++.+++.+.......+.++
T Consensus 1 kavIla~G~GtRl~pl-t~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~-~~~i~~~~~~~~~~~~~i~~i 78 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPL-TDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYK-EEQIEEHLGSGYKFGVKIEYI 78 (248)
T ss_dssp EEEEEEESCCGGGTTT-TTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTT-HHHHHHHHTTSGGGTEEEEEE
T ss_pred CEEEECCCCCccCchh-hhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecc-cccccccccccccccccceee
Confidence 6999999999999999 89999999999999 99999999999999999666665332 457888887654223457788
Q ss_pred EcCCCCChHHHHHHHHhcCCCCc----EEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccCC
Q 013012 83 TVPEDVGTAGALRAIAHHLTAKD----VLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (451)
Q Consensus 83 ~~~~~~gt~~~l~~~~~~l~~~~----~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 158 (451)
.+++..||+++++.+.+.+..++ |+|++||++++.++.++++.|+++++++++.+...+..
T Consensus 79 ~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------------- 143 (248)
T PF00483_consen 79 VQPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVE--------------- 143 (248)
T ss_dssp EESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESS---------------
T ss_pred ecccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhcccccccccccccccc---------------
Confidence 88888999999999998887554 99999999999999999999999988543333333221
Q ss_pred CCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHh---cCcccccccc
Q 013012 159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD---QKDKFQSLKQ 235 (451)
Q Consensus 159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~---~~~~~~s~~~ 235 (451)
.+.+||++..|++++++ .+. ||+... ..++++++|+|+|++++|+.+++ .......+..
T Consensus 144 ~~~~~g~v~~d~~~~V~-~~~-----EKP~~~------------~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (248)
T PF00483_consen 144 DPSRYGVVEVDEDGRVI-RIV-----EKPDNP------------NASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLT 205 (248)
T ss_dssp GGGGSEEEEEETTSEEE-EEE-----ESCSSH------------SHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHH
T ss_pred ccccceeeeeccceeEE-EEe-----ccCccc------------ccceeccCceEEEcchHHHHHhhhhhccchhhhHHH
Confidence 25679999999877644 444 443210 01578999999999999987743 2233344446
Q ss_pred chhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEEEeccchhhhh
Q 013012 236 DVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVR 315 (451)
Q Consensus 236 d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (451)
|+++.+++++. ....|......+|.+
T Consensus 206 d~i~~~~~~~~------------------------------------------------------~~~~~~~~~~~~w~d 231 (248)
T PF00483_consen 206 DAIPKLLEQGK------------------------------------------------------KVYAFIFEGNAYWID 231 (248)
T ss_dssp HHHHHHHHTTC------------------------------------------------------EEEEEEHSSEE-EEE
T ss_pred HHHHHHHHcCC------------------------------------------------------ceEEEEecCCeEEEE
Confidence 78887776531 122333221128999
Q ss_pred ccCHHHHHHHchhccc
Q 013012 316 LNSIQAFMDINRDVIG 331 (451)
Q Consensus 316 i~~~~~y~~~~~~~l~ 331 (451)
++++++|+++++.++.
T Consensus 232 ig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 232 IGTPEDYLEANMDLLN 247 (248)
T ss_dssp TSSHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999998764
No 30
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=100.00 E-value=3.9e-32 Score=247.33 Aligned_cols=211 Identities=40% Similarity=0.657 Sum_probs=170.9
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhcc-Cc--eee
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-DR--LHV 79 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~-~~--~~~ 79 (451)
|+|||||||.|+||+|+ +...||+|+|++|+|||+|+++++.++|+++++|++++.. .+.+++++..... .+ ...
T Consensus 1 ~~aVILAgG~g~R~~pl-t~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~-~~~i~~~l~~~~~~~~~~~~~ 78 (214)
T cd04198 1 FQAVILAGGGGSRLYPL-TDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEE-QAEISTYLRSFPLNLKQKLDE 78 (214)
T ss_pred CEEEEEeCCCCCcCCcc-ccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHH-HHHHHHHHHhcccccCcceeE
Confidence 68999999999999999 8899999999999999999999999999999999998532 3456676654311 11 112
Q ss_pred EEEEcCCCCChHHHHHHHHhcCCCCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccCCC
Q 013012 80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK 159 (451)
Q Consensus 80 ~i~~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
.+....+..||+++++.+.+.+ .++|+|++||++++.++..+++.|++.++.+|+++++........ ++..+.+.
T Consensus 79 ~~~~~~~~~gt~~al~~~~~~i-~~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~----~~~~~~~~ 153 (214)
T cd04198 79 VTIVLDEDMGTADSLRHIRKKI-KKDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQK----GGKGKSKK 153 (214)
T ss_pred EEecCCCCcChHHHHHHHHhhc-CCCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCccccc----CCcccccC
Confidence 2333455689999999999887 578999999999999999999999999999999888755322111 11122233
Q ss_pred CCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHH
Q 013012 160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL 220 (451)
Q Consensus 160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l 220 (451)
...+.++.+|+++..++++.+..+.++...+++.+++++|++.++++|.|+|||+|++++|
T Consensus 154 ~~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 154 ADERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CCCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 4567899999999899999887777788889999999999999999999999999999875
No 31
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.98 E-value=2.8e-31 Score=245.40 Aligned_cols=228 Identities=22% Similarity=0.409 Sum_probs=176.5
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEE
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~ 82 (451)
|++||||||.|+||+|+ |.+.||+|+|++|+|||+|+++++.++|+++++|+++++. +.+.+++.++ ....++.++
T Consensus 1 m~~iIlAaG~g~R~~~l-t~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~--~~~~~~l~~~-~~~~~~~i~ 76 (233)
T cd06425 1 MKALILVGGYGTRLRPL-TLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRP--EDMVPFLKEY-EKKLGIKIT 76 (233)
T ss_pred CcEEEecCCCccccCcc-ccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCH--HHHHHHHhcc-cccCCeEEE
Confidence 68999999999999999 8999999999999999999999999999999999998653 4566666643 112334444
Q ss_pred E--cCCCCChHHHHHHHHhcCCC--CcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccCC
Q 013012 83 T--VPEDVGTAGALRAIAHHLTA--KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (451)
Q Consensus 83 ~--~~~~~gt~~~l~~~~~~l~~--~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 158 (451)
. +++..|++++++.+++.+.. +++++++||.+++.++.++++.|+++++++++++.+.+
T Consensus 77 ~~~~~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 139 (233)
T cd06425 77 FSIETEPLGTAGPLALARDLLGDDDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVE----------------- 139 (233)
T ss_pred eccCCCCCccHHHHHHHHHHhccCCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcC-----------------
Confidence 3 44568999999999988853 67999999999999999999999999998888877542
Q ss_pred CCCcccEEEecC-CCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCccccccccch
Q 013012 159 KPGRYNIIGMDP-TKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDV 237 (451)
Q Consensus 159 ~~~~~~~v~~d~-~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~~~s~~~d~ 237 (451)
.+..||++.+|+ +++ +..+. ||+. ...++++++|+|+|++++|..+.+ ...++..|+
T Consensus 140 ~~~~~g~v~~d~~~~~-v~~~~-----ekp~-------------~~~~~~~~~Giyi~~~~~l~~l~~---~~~~~~~~~ 197 (233)
T cd06425 140 DPSKYGVVVHDENTGR-IERFV-----EKPK-------------VFVGNKINAGIYILNPSVLDRIPL---RPTSIEKEI 197 (233)
T ss_pred CccccCeEEEcCCCCE-EEEEE-----ECCC-------------CCCCCEEEEEEEEECHHHHHhccc---Ccccchhhh
Confidence 145689999988 554 44554 3321 112578999999999999976532 234455788
Q ss_pred hhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEEEeccchhhhhcc
Q 013012 238 LPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLN 317 (451)
Q Consensus 238 lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 317 (451)
++.+++++ ++.+| +..++|.+++
T Consensus 198 ~~~l~~~~-------------------------------------------------------~v~~~--~~~g~w~dig 220 (233)
T cd06425 198 FPKMASEG-------------------------------------------------------QLYAY--ELPGFWMDIG 220 (233)
T ss_pred HHHHHhcC-------------------------------------------------------CEEEE--eeCCEEEcCC
Confidence 88876532 23445 3468999999
Q ss_pred CHHHHHHHchhcc
Q 013012 318 SIQAFMDINRDVI 330 (451)
Q Consensus 318 ~~~~y~~~~~~~l 330 (451)
++++|+++++.+|
T Consensus 221 t~~~~~~a~~~~l 233 (233)
T cd06425 221 QPKDFLKGMSLYL 233 (233)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999988654
No 32
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.98 E-value=7e-31 Score=247.93 Aligned_cols=205 Identities=21% Similarity=0.356 Sum_probs=157.1
Q ss_pred CC-ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceee
Q 013012 1 MD-FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (451)
Q Consensus 1 m~-~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~ 79 (451)
|. ++|||||||.|+||+|+ |...||||+||+|||||+|+|++|..+|+++|++++.++. .+.+++++.+.....+.+
T Consensus 1 m~~~kaIILAgG~GtRL~Pl-T~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~-~~~~~~~l~~g~~~g~~i 78 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPV-TMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQD-TPRFQQLLGDGSQWGLNL 78 (292)
T ss_pred CCceEEEEECCCcccccCcc-cCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCc-hHHHHHHHcCccccCcee
Confidence 65 89999999999999999 9999999999999999999999999999999998876443 345677765422122346
Q ss_pred EEEEcCCCCChHHHHHHHHhcCCCCcEEEEcCC-ccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccCC
Q 013012 80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD-LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (451)
Q Consensus 80 ~i~~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D-~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 158 (451)
.++.++.+.|+++++..+.+++.+++++++.|| +++..++.++++.|.+.++++|+++..++
T Consensus 79 ~y~~q~~~~Gta~Al~~a~~~i~~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~----------------- 141 (292)
T PRK15480 79 QYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVN----------------- 141 (292)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcC-----------------
Confidence 677788889999999999999866678889999 55688999999999888888888876543
Q ss_pred CCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCcc---cccccc
Q 013012 159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK---FQSLKQ 235 (451)
Q Consensus 159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~---~~s~~~ 235 (451)
++.+||++.+|+++++ ..+. ||+. .+.++++++|+|+|++++++.+..-.++ ..++ +
T Consensus 142 ~p~~yGvv~~d~~g~v-~~i~-----EKP~-------------~p~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~i-t 201 (292)
T PRK15480 142 DPERYGVVEFDQNGTA-ISLE-----EKPL-------------QPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEI-T 201 (292)
T ss_pred CcccCcEEEECCCCcE-EEEE-----ECCC-------------CCCCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEh-H
Confidence 2568999999987764 4554 4532 1246789999999999998755221111 1122 4
Q ss_pred chhhHHHHh
Q 013012 236 DVLPYLVRS 244 (451)
Q Consensus 236 d~lp~l~~~ 244 (451)
|+++.++++
T Consensus 202 d~~~~~l~~ 210 (292)
T PRK15480 202 DINRIYMEQ 210 (292)
T ss_pred HHHHHHHhc
Confidence 667666654
No 33
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.98 E-value=5.6e-31 Score=246.87 Aligned_cols=183 Identities=25% Similarity=0.415 Sum_probs=143.5
Q ss_pred EEEEecC--CCCCCCCCCCCCCcccccccCCcchHHHHHHHHHH-CCCcEEEEEecCchhhHHHHHhhhhhc-cCceeeE
Q 013012 5 VVVLAGG--TSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAY-VDRLHVE 80 (451)
Q Consensus 5 avIlAgG--~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~-~gi~~iivv~~~~~~~~~i~~~~~~~~-~~~~~~~ 80 (451)
||||||| .|+||+|+ |..+||||+|++|+|||+|+|++|.+ +|+++++|++++. .+.+.+|+.+.. ...+.+.
T Consensus 1 ~iIla~G~~~GtRl~pl-t~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~--~~~i~~~l~~~~~~~~~~i~ 77 (257)
T cd06428 1 AVILVGGPQKGTRFRPL-SLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYP--ESVFSDFISDAQQEFNVPIR 77 (257)
T ss_pred CEEEccCCCCCcccCCc-cCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCC--HHHHHHHHHhcccccCceEE
Confidence 6999999 89999999 99999999999999999999999999 6999999999864 346777775431 1123344
Q ss_pred EEEcCCCCChHHHHHHHHhcCC---CCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccC
Q 013012 81 VATVPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT 157 (451)
Q Consensus 81 i~~~~~~~gt~~~l~~~~~~l~---~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 157 (451)
++.+++..||+++++.+++++. +++|+|++||.+++.++..+++.|+++++++|+++...+..
T Consensus 78 ~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~-------------- 143 (257)
T cd06428 78 YLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASRE-------------- 143 (257)
T ss_pred EecCCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEcccc--------------
Confidence 4555567899999999988773 36799999999999999999999999999998887754321
Q ss_pred CCCCcccEEEec-CCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHH
Q 013012 158 KKPGRYNIIGMD-PTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL 224 (451)
Q Consensus 158 ~~~~~~~~v~~d-~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~ 224 (451)
.+..||++.+| ++++ +..+. ||+. ...++++++|+|+|++++|..+.
T Consensus 144 -~~~~yg~v~~d~~~g~-v~~~~-----Ekp~-------------~~~~~~~~~Giyi~~~~~~~~i~ 191 (257)
T cd06428 144 -QASNYGCIVEDPSTGE-VLHYV-----EKPE-------------TFVSDLINCGVYLFSPEIFDTIK 191 (257)
T ss_pred -ccccccEEEEeCCCCe-EEEEE-----eCCC-------------CcccceEEEEEEEECHHHHHHHh
Confidence 24578999888 4554 55555 3431 12356899999999999987553
No 34
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.97 E-value=1e-30 Score=238.71 Aligned_cols=203 Identities=27% Similarity=0.446 Sum_probs=160.5
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCc-----e
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDR-----L 77 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~-----~ 77 (451)
++|||||||.|+||+|+ |...||||+||+|+|||+|+|+++.++|+++|+|+++++ .+.+++|+.+..... .
T Consensus 1 ~~aiIla~G~g~Rl~pl-t~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~--~~~i~~~l~~~~~~~~~~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPL-TKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSH--SDQIKEYIEKSKWSKPKSSLM 77 (217)
T ss_pred CeEEEEcCCCccccccc-ccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCC--HHHHHHHHhhccccccccCcc
Confidence 68999999999999999 999999999999999999999999999999999999865 457888887643211 2
Q ss_pred eeEEEEcCCCCChHHHHHHH--HhcCCCCcEEEEcCCccCCCCchHHHHHHHhc-----CceEEEEEeeeccCCCccCCC
Q 013012 78 HVEVATVPEDVGTAGALRAI--AHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRH-----DAVVTAMICSVPVSGLSEAGS 150 (451)
Q Consensus 78 ~~~i~~~~~~~gt~~~l~~~--~~~l~~~~~lvl~~D~i~~~~~~~~l~~~~~~-----~~~~t~~~~~~~~~~~~~~~~ 150 (451)
.+.++.+++..|++++++.. ...+ .++|++++||.+++.++.++++.|+++ ++.+|+++...+..+.
T Consensus 78 ~i~~~~~~~~~~~~~al~~~~~~~~~-~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~----- 151 (217)
T cd04197 78 IVIIIMSEDCRSLGDALRDLDAKGLI-RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHR----- 151 (217)
T ss_pred eEEEEeCCCcCccchHHHHHhhcccc-CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccc-----
Confidence 35566666778999998764 3344 578999999999999999999999884 7888888876542110
Q ss_pred CCCcccCCCCCcccEEEecCCCceEEEeeccccccc--cccccHHHHhhcCeeEEecCCccceEEeechHHH
Q 013012 151 SGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEK--DTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL 220 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek--~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l 220 (451)
.+....++++.+|+++..++.+.+++...+ ...+++.++..++++.++++|.|+|||+|++++|
T Consensus 152 ------~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 152 ------TRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred ------cccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 011224678888877445667776543322 3468899999999999999999999999999875
No 35
>PRK10122 GalU regulator GalF; Provisional
Probab=99.97 E-value=2.4e-30 Score=245.60 Aligned_cols=236 Identities=16% Similarity=0.298 Sum_probs=172.2
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhc--------
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-------- 73 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~-------- 73 (451)
+|+|||||||.|+||+|+ |...||||+||+|||||+|+++++.++|+++|+|++++. .+.+.+|+...+
T Consensus 3 ~mkavIlAaG~GtRl~Pl-T~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~--~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPA-TKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHAS--KNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred ceEEEEECCcCCcccCcc-cCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCC--hHHHHHHHhcchhHHHHHhh
Confidence 489999999999999999 999999999999999999999999999999999999865 346666664211
Q ss_pred --------------cCceeeEEEEcCCCCChHHHHHHHHhcCCCCcEEEEcCCccCC--------CCchHHHHHHHhcCc
Q 013012 74 --------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD--------VPPGAVTAAHRRHDA 131 (451)
Q Consensus 74 --------------~~~~~~~i~~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D~i~~--------~~~~~~l~~~~~~~~ 131 (451)
.....+.++.++++.||+++++.+++++.+++|+|+.||.+++ .++.++++.|.++++
T Consensus 80 ~~k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~ 159 (297)
T PRK10122 80 RVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGR 159 (297)
T ss_pred cchhhhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcCCCCEEEEECCeeccCccccccchhHHHHHHHHHHhCC
Confidence 0123456677888899999999999998667899999996664 479999999988877
Q ss_pred eEEEEEeeeccCCCccCCCCCCcccCCCCCcccEEEec----CCCc--eEEEeeccccccccccccHHHHhhcCeeEEec
Q 013012 132 VVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD----PTKQ--FLLHIATGAELEKDTRIRKSILRAVGQMDIRA 205 (451)
Q Consensus 132 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d----~~~~--~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s 205 (451)
+++++ ...+ + .+.+||++.+| +++. .+..+. ||+... ....+
T Consensus 160 ~~~~~-~~~~-~---------------~~~~yGvv~~d~~~~~~g~v~~I~~~~-----EKp~~~----------~~~~s 207 (297)
T PRK10122 160 SQVLA-KRMP-G---------------DLSEYSVIQTKEPLDREGKVSRIVEFI-----EKPDQP----------QTLDS 207 (297)
T ss_pred cEEEE-EECC-C---------------CCCCceEEEecCcccCCCCeeeEEEEE-----ECCCCc----------ccCCc
Confidence 65443 3221 1 25678999986 3443 234444 443210 01235
Q ss_pred CCccceEEeechHHHHHHHhcCccccccc----cchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCC
Q 013012 206 DLMDAHMYAFNRSVLQEVLDQKDKFQSLK----QDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS 281 (451)
Q Consensus 206 ~l~~~giYi~~~~~l~~~~~~~~~~~s~~----~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (451)
+++++|+|+|++++|..+.+... .+.. +|+++.+++++
T Consensus 208 ~~~~~GiYi~~~~i~~~l~~~~~--~~~~e~~ltd~i~~l~~~~------------------------------------ 249 (297)
T PRK10122 208 DLMAVGRYVLSADIWPELERTEP--GAWGRIQLTDAIAELAKKQ------------------------------------ 249 (297)
T ss_pred cEEEEEEEEECHHHHHHHHhCCC--CCCCeeeHHHHHHHHHhCC------------------------------------
Confidence 78999999999999987643111 1112 36666655321
Q ss_pred ccccccCCCCCCCCCCCcceeEEEEeccchhhhhccCHHHHHHHchhc-cc
Q 013012 282 FHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV-IG 331 (451)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~y~~~~~~~-l~ 331 (451)
++.+|. ..++|.+++++++|.+++..+ +.
T Consensus 250 -------------------~v~~~~--~~G~w~DiG~p~~~~~a~~~~~~~ 279 (297)
T PRK10122 250 -------------------SVDAML--MTGDSYDCGKKMGYMQAFVKYGLR 279 (297)
T ss_pred -------------------CEEEEE--eCCEEEcCCCHHHHHHHHHHHHhc
Confidence 234453 468999999999999999987 44
No 36
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.97 E-value=4.2e-30 Score=238.63 Aligned_cols=233 Identities=21% Similarity=0.314 Sum_probs=170.9
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEE
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~ 82 (451)
|+|||||||.|+||+|+ |..+||+|+|++|+|||+|+|+++.++|+++++++++++. .+.+.+++.+.....+.+.+.
T Consensus 1 m~~iIlAaG~gtRl~pl-t~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~~~~~l~~~~~~~~~i~~~ 78 (240)
T cd02538 1 MKGIILAGGSGTRLYPL-TKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPED-LPLFKELLGDGSDLGIRITYA 78 (240)
T ss_pred CeEEEEcCcCcccCCcc-ccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcch-HHHHHHHHhcccccCceEEEe
Confidence 58999999999999999 9999999999999999999999999999999999887432 345666665421112334444
Q ss_pred EcCCCCChHHHHHHHHhcCCCCcEEEEcCC-ccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccCCCCC
Q 013012 83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGD-LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG 161 (451)
Q Consensus 83 ~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D-~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (451)
.++...|++++++.+++++.+++++|+.|| .+.+.++.++++.|.+.++++++++...+ .+.
T Consensus 79 ~~~~~~G~~~al~~a~~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 141 (240)
T cd02538 79 VQPKPGGLAQAFIIGEEFIGDDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVN-----------------DPE 141 (240)
T ss_pred eCCCCCCHHHHHHHHHHhcCCCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECC-----------------chh
Confidence 455568999999999998866779999999 56677899999999888888888776542 145
Q ss_pred cccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCc--ccccc-ccchh
Q 013012 162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD--KFQSL-KQDVL 238 (451)
Q Consensus 162 ~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~--~~~s~-~~d~l 238 (451)
.||++.+|++++ +..+. ||+. ...++++++|+|+|++++|+.+ +... +..++ -.|++
T Consensus 142 ~~g~v~~d~~g~-v~~~~-----ekp~-------------~~~~~~~~~Giyi~~~~~l~~l-~~~~~~~~~~~~l~d~~ 201 (240)
T cd02538 142 RYGVVEFDENGR-VLSIE-----EKPK-------------KPKSNYAVTGLYFYDNDVFEIA-KQLKPSARGELEITDVN 201 (240)
T ss_pred cCceEEecCCCc-EEEEE-----ECCC-------------CCCCCeEEEEEEEECHHHHHHH-HhcCCCCCCeEEhHHHH
Confidence 689999998775 44554 3321 1124678999999999998654 3211 11111 13677
Q ss_pred hHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEEEeccchhhhhccC
Q 013012 239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNS 318 (451)
Q Consensus 239 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 318 (451)
+.+++++ +..++..+..++|.++++
T Consensus 202 ~~l~~~g-------------------------------------------------------~~~~~~~~~~g~w~digt 226 (240)
T cd02538 202 NEYLEKG-------------------------------------------------------KLSVELLGRGFAWLDTGT 226 (240)
T ss_pred HHHHHhC-------------------------------------------------------CeEEEEeCCCcEEEeCCC
Confidence 7766542 122333344589999999
Q ss_pred HHHHHHHchhc
Q 013012 319 IQAFMDINRDV 329 (451)
Q Consensus 319 ~~~y~~~~~~~ 329 (451)
+++|+++++.+
T Consensus 227 ~~~~~~a~~~~ 237 (240)
T cd02538 227 HESLLEASNFV 237 (240)
T ss_pred HHHHHHHHHHH
Confidence 99999998753
No 37
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.97 E-value=5.3e-30 Score=241.74 Aligned_cols=202 Identities=21% Similarity=0.363 Sum_probs=153.6
Q ss_pred eEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEEE
Q 013012 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (451)
Q Consensus 4 ~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~ 83 (451)
+|||||||.|+||+|+ |...||+|+||+|||||+|+|+.+..+|+++|+|++.++. .+.+++++.+.....+.+.++.
T Consensus 1 kaIILAgG~GtRL~pl-T~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~-~~~~~~~lg~g~~~g~~i~~~~ 78 (286)
T TIGR01207 1 KGIILAGGSGTRLYPI-TRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQD-TPRFQQLLGDGSQWGVNLSYAV 78 (286)
T ss_pred CEEEECCCCCccCCcc-cCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCc-HHHHHHHhccccccCceEEEEE
Confidence 5899999999999999 9999999999999999999999999999999998886432 3456666654211123456666
Q ss_pred cCCCCChHHHHHHHHhcCCCCcEEEEcCC-ccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccCCCCCc
Q 013012 84 VPEDVGTAGALRAIAHHLTAKDVLVVSGD-LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR 162 (451)
Q Consensus 84 ~~~~~gt~~~l~~~~~~l~~~~~lvl~~D-~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (451)
++++.||+++++.+.+++.+++++++.|| .+++.++.++++.|.+.++++|+++..++ ++.+
T Consensus 79 q~~~~Gta~al~~a~~~l~~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~-----------------~p~~ 141 (286)
T TIGR01207 79 QPSPDGLAQAFIIGEDFIGGDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS-----------------DPER 141 (286)
T ss_pred ccCCCCHHHHHHHHHHHhCCCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc-----------------CHHH
Confidence 77789999999999999976778889999 56788999999999888888888877643 2568
Q ss_pred ccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcC-cc-ccccc-cchhh
Q 013012 163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK-DK-FQSLK-QDVLP 239 (451)
Q Consensus 163 ~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~-~~-~~s~~-~d~lp 239 (451)
||++.+|+++++ ..+. ||+. ...++++++|+|+|++++++.+ +.. ++ ..++. +|+++
T Consensus 142 yGvv~~d~~g~V-~~i~-----EKp~-------------~~~s~~~~~GiYi~~~~i~~~l-~~~~~~~~ge~eitdv~~ 201 (286)
T TIGR01207 142 YGVVEFDSNGRA-ISIE-----EKPA-------------QPKSNYAVTGLYFYDNRVVEIA-RQLKPSARGELEITDLNR 201 (286)
T ss_pred CceEEECCCCeE-EEEE-----ECCC-------------CCCCCEEEEEEEEEchHHHHHH-hhcCCCCCCcEeHHHHHH
Confidence 999999987764 4454 4432 1236789999999999998644 321 10 11111 47777
Q ss_pred HHHHh
Q 013012 240 YLVRS 244 (451)
Q Consensus 240 ~l~~~ 244 (451)
.++++
T Consensus 202 ~~l~~ 206 (286)
T TIGR01207 202 VYLEE 206 (286)
T ss_pred HHHHc
Confidence 66654
No 38
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.97 E-value=8e-30 Score=238.00 Aligned_cols=225 Identities=19% Similarity=0.344 Sum_probs=172.4
Q ss_pred eEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccC--ce----
Q 013012 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVD--RL---- 77 (451)
Q Consensus 4 ~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~--~~---- 77 (451)
+|||||||.|+||+|+ |...||+|+||+|+|||+|+++.+.++|+++|+|++++. .+.+.+++.+.... .+
T Consensus 1 kavilaaG~gtRl~~~-t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~~~~ 77 (254)
T TIGR02623 1 KAVILAGGLGTRISEE-THLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYK--GYVIKEYFANYFLHMSDVTFHM 77 (254)
T ss_pred CEEEEcCccccccCcc-ccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCC--HHHHHHHHHhhhhcccCeeEEe
Confidence 5899999999999999 899999999999999999999999999999999999865 34566666542110 11
Q ss_pred ---------------eeEEEEcCCCCChHHHHHHHHhcCCCCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeecc
Q 013012 78 ---------------HVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142 (451)
Q Consensus 78 ---------------~~~i~~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~ 142 (451)
.+.+..+.+..||+++++.+++++.+++|++++||.+++.++.++++.|.+.++++|++...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~--- 154 (254)
T TIGR02623 78 ADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLDDEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQ--- 154 (254)
T ss_pred cccccccccccCCccceeeeecCCcCCcHHHHHHHHHhcCCCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEec---
Confidence 12233344568999999999999866789999999999999999999999998988876432
Q ss_pred CCCccCCCCCCcccCCCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHH
Q 013012 143 SGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQE 222 (451)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~ 222 (451)
.+..||++.+|+ + .+..+. ||+.. .++++++|+|+|++++|+
T Consensus 155 ----------------~~~~yG~v~~d~-~-~V~~~~-----Ekp~~--------------~~~~i~~Giyi~~~~il~- 196 (254)
T TIGR02623 155 ----------------PPGRFGALDLEG-E-QVTSFQ-----EKPLG--------------DGGWINGGFFVLNPSVLD- 196 (254)
T ss_pred ----------------CCCcccEEEECC-C-eEEEEE-----eCCCC--------------CCCeEEEEEEEEcHHHHh-
Confidence 145689988885 4 455665 34310 146889999999999995
Q ss_pred HHhcCccccccccchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCccee
Q 013012 223 VLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKC 302 (451)
Q Consensus 223 ~~~~~~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (451)
.++.. ..++.+|+++.+++++ ++
T Consensus 197 ~l~~~--~~~~~~d~i~~l~~~~-------------------------------------------------------~v 219 (254)
T TIGR02623 197 LIDGD--ATVWEQEPLETLAQRG-------------------------------------------------------EL 219 (254)
T ss_pred hcccc--CchhhhhHHHHHHhCC-------------------------------------------------------CE
Confidence 44432 2356678888887542 23
Q ss_pred EEEEeccchhhhhccCHHHHHHHchhccc
Q 013012 303 CVYIASNSKYCVRLNSIQAFMDINRDVIG 331 (451)
Q Consensus 303 ~~~~~~~~~~~~~i~~~~~y~~~~~~~l~ 331 (451)
++| ...+||.+++++++|.+++..+..
T Consensus 220 ~~~--~~~g~w~dIgt~~~~~~~~~~~~~ 246 (254)
T TIGR02623 220 SAY--EHSGFWQPMDTLRDKNYLEELWES 246 (254)
T ss_pred EEE--eCCCEEecCCchHHHHHHHHHHHc
Confidence 444 346899999999999988886644
No 39
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.96 E-value=8.7e-29 Score=225.53 Aligned_cols=206 Identities=33% Similarity=0.503 Sum_probs=155.0
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhcc----Ccee
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV----DRLH 78 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~----~~~~ 78 (451)
|+|||||||.|+||.|+ |...||+|+|++|+|||+|+++++.++|+++++|+++++. +.+.+++.+.+. ....
T Consensus 1 ~~avIlagg~g~rl~pl-t~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~--~~~~~~~~~~~~~~~~~~~~ 77 (216)
T cd02507 1 FQAVVLADGFGSRFLPL-TSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHS--QAIIEHLLKSKWSSLSSKMI 77 (216)
T ss_pred CeEEEEeCCCccccCcc-ccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcH--HHHHHHHHhcccccccCCce
Confidence 68999999999999999 8999999999999999999999999999999999998653 345555544321 1122
Q ss_pred eEEEE--cCCCCChHHHHHHHHhcCCCCcEEEEcCCccCCCCchHHHHH--HHhcCceEEEEEeeeccCCCccCCCCCCc
Q 013012 79 VEVAT--VPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAA--HRRHDAVVTAMICSVPVSGLSEAGSSGAK 154 (451)
Q Consensus 79 ~~i~~--~~~~~gt~~~l~~~~~~l~~~~~lvl~~D~i~~~~~~~~l~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 154 (451)
+.+.. +.+..|++++++.+.+.+ +++|++++||++++.++.+++++ +...++.+++.+...+.....+
T Consensus 78 v~~~~~~~~~~~Gta~~l~~~~~~i-~~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~------- 149 (216)
T cd02507 78 VDVITSDLCESAGDALRLRDIRGLI-RSDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTE------- 149 (216)
T ss_pred EEEEEccCCCCCccHHHHHHHhhcC-CCCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCcc-------
Confidence 33333 345689999999999888 57899999999999999999965 4444555665555443221110
Q ss_pred ccCCCCCcccEEEecCCC--ceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHH
Q 013012 155 DKTKKPGRYNIIGMDPTK--QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL 220 (451)
Q Consensus 155 ~~~~~~~~~~~v~~d~~~--~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l 220 (451)
..+....++++.+|+++ ..+.++.+..+..+...+++.++++++++.++++|+|+|||+|++++|
T Consensus 150 -~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 150 -QSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred -ccccCCCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 01224567899999987 345555544332333446899999999999999999999999999875
No 40
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.96 E-value=2.8e-28 Score=230.09 Aligned_cols=235 Identities=17% Similarity=0.284 Sum_probs=166.0
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhc-c-------
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-V------- 74 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~-~------- 74 (451)
|+|||||||.|+||+|+ |..+||||+|++|+|||+|+++++.++|+++++|++++.. +.+.+++.+.+ +
T Consensus 1 mkaiIlAaG~gtRl~pl-t~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~ 77 (267)
T cd02541 1 RKAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGK--RAIEDHFDRSYELEETLEKK 77 (267)
T ss_pred CeEEEEcCCCCccCCCc-ccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCch--HHHHHHhCCcHHHHHHHHhc
Confidence 58999999999999999 8999999999999999999999999999999999998653 35666554211 0
Q ss_pred -------------CceeeEEEEcCCCCChHHHHHHHHhcCCCCcEEEEcCCccCCC---CchHHHHHHHhcCceEEEEEe
Q 013012 75 -------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDV---PPGAVTAAHRRHDAVVTAMIC 138 (451)
Q Consensus 75 -------------~~~~~~i~~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D~i~~~---~~~~~l~~~~~~~~~~t~~~~ 138 (451)
....+.++.++...||+++++.+++++..++|+|++||.+... ++.++++.|++.++++ +++.
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 156 (267)
T cd02541 78 GKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASV-IAVE 156 (267)
T ss_pred ccHHHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhCCCE-EEEE
Confidence 0123445556667999999999999886678999999955443 4999999998776654 3333
Q ss_pred eeccCCCccCCCCCCcccCCCCCcccEEEecCC---CceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEee
Q 013012 139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPT---KQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAF 215 (451)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~---~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~ 215 (451)
..+.. .+.+||++.+|++ ...+..+.+ |+.. ....++++++|+|+|
T Consensus 157 ~~~~~---------------~~~~~g~v~~d~~~~~~~~v~~~~E-----kp~~-----------~~~~~~~~~~Giyi~ 205 (267)
T cd02541 157 EVPPE---------------DVSKYGIVKGEKIDGDVFKVKGLVE-----KPKP-----------EEAPSNLAIVGRYVL 205 (267)
T ss_pred EcChh---------------cCccceEEEeecCCCCceEEeEEEE-----CCCC-----------CCCCCceEEEEEEEc
Confidence 33211 2457899999862 224555553 3210 011346889999999
Q ss_pred chHHHHHHHhcCcc--ccccccchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCC
Q 013012 216 NRSVLQEVLDQKDK--FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGS 293 (451)
Q Consensus 216 ~~~~l~~~~~~~~~--~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (451)
++++|..+.+...+ ....-.|+++.+++++
T Consensus 206 ~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~------------------------------------------------ 237 (267)
T cd02541 206 TPDIFDILENTKPGKGGEIQLTDAIAKLLEEE------------------------------------------------ 237 (267)
T ss_pred CHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcC------------------------------------------------
Confidence 99998766431111 0011135566555431
Q ss_pred CCCCCcceeEEEEeccchhhhhccCHHHHHHHchhc
Q 013012 294 APVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV 329 (451)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~y~~~~~~~ 329 (451)
++++|. ..+||.+++++++|+++|+++
T Consensus 238 -------~v~~~~--~~g~w~digt~~~y~~a~~~~ 264 (267)
T cd02541 238 -------PVYAYV--FEGKRYDCGNKLGYLKATVEF 264 (267)
T ss_pred -------CEEEEE--eeeEEEeCCCHHHHHHHHHHH
Confidence 244553 357999999999999999975
No 41
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=99.96 E-value=3.6e-28 Score=228.45 Aligned_cols=188 Identities=16% Similarity=0.284 Sum_probs=139.3
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhcc--------
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-------- 74 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~-------- 74 (451)
|+|||||||.|+||+|+ |..+||||+|++|+|||+|+|+++.++|+++++|++++. .+.+.+|+.+.+.
T Consensus 1 m~avIlAaG~gtRl~pl-t~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~--~~~i~~~~~~~~~~~~~~~~~ 77 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRG--KRAIEDHFDTSYELEHQLEKR 77 (260)
T ss_pred CeEEEEcccCcccCCCc-ccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCc--HHHHHHHhcccHHHHHHHHhh
Confidence 58999999999999999 899999999999999999999999999999999999866 3456666642110
Q ss_pred -------------CceeeEEEEcCCCCChHHHHHHHHhcCCCCcEEEEcCCccCC-C--CchHHHHHHHhcCceEEEEEe
Q 013012 75 -------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD-V--PPGAVTAAHRRHDAVVTAMIC 138 (451)
Q Consensus 75 -------------~~~~~~i~~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D~i~~-~--~~~~~l~~~~~~~~~~t~~~~ 138 (451)
....+.+..+....||+++++.+++++.+++|+|++||.+.. . ++.++++.|+++++++ +++.
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~ 156 (260)
T TIGR01099 78 GKEELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVE 156 (260)
T ss_pred hhHHHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EEEE
Confidence 012234444556799999999999988667899999995543 3 7999999999888875 4443
Q ss_pred eeccCCCccCCCCCCcccCCCCCcccEEEecC---CCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEee
Q 013012 139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP---TKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAF 215 (451)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~---~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~ 215 (451)
..+.. .+.+||++.+|. ++..+..+.+ |+.. ....++++++|+|+|
T Consensus 157 ~~~~~---------------~~~~~g~v~~d~~~~~~~~v~~~~E-----kp~~-----------~~~~~~~~~~Giyi~ 205 (260)
T TIGR01099 157 EVPKE---------------EVSKYGVIDGEGVEEGLYEIKDMVE-----KPKP-----------EEAPSNLAIVGRYVL 205 (260)
T ss_pred ECChh---------------hcccCceEEeccccCCceeEEEEEE-----CCCC-----------CCCCCceEEEEEEEC
Confidence 33211 245789988873 3234556653 3210 011246889999999
Q ss_pred chHHHHHHHh
Q 013012 216 NRSVLQEVLD 225 (451)
Q Consensus 216 ~~~~l~~~~~ 225 (451)
++++|..+..
T Consensus 206 ~~~~~~~l~~ 215 (260)
T TIGR01099 206 TPDIFDLLEE 215 (260)
T ss_pred CHHHHHHHHh
Confidence 9999887643
No 42
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.96 E-value=6.3e-28 Score=223.59 Aligned_cols=232 Identities=20% Similarity=0.336 Sum_probs=172.3
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEE
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~ 82 (451)
|+|||||||.|+||+|+ |...||+|+|++|+|||+|+++++.++|+++++|++++. .+.+.+++.+.......+.++
T Consensus 1 m~avIlAaG~g~Rl~pl-t~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~--~~~~~~~~~~~~~~~~~i~~~ 77 (236)
T cd04189 1 MKGLILAGGKGTRLRPL-TYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPT--GEEIKEALGDGSRFGVRITYI 77 (236)
T ss_pred CeEEEECCCcccccccc-ccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCC--HHHHHHHhcchhhcCCeEEEE
Confidence 68999999999999999 889999999999999999999999999999999999864 446777775432112345555
Q ss_pred EcCCCCChHHHHHHHHhcCCCCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccCCCCCc
Q 013012 83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR 162 (451)
Q Consensus 83 ~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (451)
.++...|++++++.+++.+.++++++++||.++..++.++++.|.++++++++++.+.+ .+..
T Consensus 78 ~~~~~~g~~~sl~~a~~~i~~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~ 140 (236)
T cd04189 78 LQEEPLGLAHAVLAARDFLGDEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVE-----------------DPRR 140 (236)
T ss_pred ECCCCCChHHHHHHHHHhcCCCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECC-----------------Cccc
Confidence 56667899999999999886578999999988899999999999988888887776532 1346
Q ss_pred ccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCcc---ccccccchhh
Q 013012 163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK---FQSLKQDVLP 239 (451)
Q Consensus 163 ~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~---~~s~~~d~lp 239 (451)
|+++.+|+. .+..+. +|+. ...++++++|+|+|++++|+.+...... ...+ .|+++
T Consensus 141 ~g~~~~d~~--~v~~~~-----ek~~-------------~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~-~d~~~ 199 (236)
T cd04189 141 FGVAVVDDG--RIVRLV-----EKPK-------------EPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEI-TDAIQ 199 (236)
T ss_pred ceEEEEcCC--eEEEEE-----ECCC-------------CCCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEH-HHHHH
Confidence 788888753 444444 3321 1124678999999999998765221111 0111 36666
Q ss_pred HHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCcceeEEEEeccchhhhhccCH
Q 013012 240 YLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSI 319 (451)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 319 (451)
.+++++ .++.+| +..++|.+++++
T Consensus 200 ~~i~~g------------------------------------------------------~~v~~~--~~~~~~~~i~t~ 223 (236)
T cd04189 200 WLIDRG------------------------------------------------------RRVGYS--IVTGWWKDTGTP 223 (236)
T ss_pred HHHHcC------------------------------------------------------CcEEEE--EcCceEEeCCCH
Confidence 665432 123344 335789999999
Q ss_pred HHHHHHchhccc
Q 013012 320 QAFMDINRDVIG 331 (451)
Q Consensus 320 ~~y~~~~~~~l~ 331 (451)
++|.++++.++.
T Consensus 224 ~dl~~a~~~~l~ 235 (236)
T cd04189 224 EDLLEANRLLLD 235 (236)
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 43
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.96 E-value=4.8e-28 Score=222.04 Aligned_cols=194 Identities=19% Similarity=0.294 Sum_probs=145.2
Q ss_pred eEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEEE
Q 013012 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (451)
Q Consensus 4 ~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~ 83 (451)
+|||||||.|+||+|+ |..+||+|+|++|+|||+|++++|.++|+++|+|++++. .+.+.+++.+.. ..+.+.+..
T Consensus 1 kaiIlaaG~g~Rl~pl-t~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~--~~~i~~~~~~~~-~~~~i~~~~ 76 (221)
T cd06422 1 KAMILAAGLGTRMRPL-TDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHL--ADQIEAHLGDSR-FGLRITISD 76 (221)
T ss_pred CEEEEcCCCCCccccc-cCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCC--HHHHHHHHhccc-CCceEEEec
Confidence 5899999999999999 999999999999999999999999999999999999865 456777775411 122233333
Q ss_pred cC-CCCChHHHHHHHHhcCCCCcEEEEcCCccCCCCchHHHHHHH--hcCceEEEEEeeeccCCCccCCCCCCcccCCCC
Q 013012 84 VP-EDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHR--RHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKP 160 (451)
Q Consensus 84 ~~-~~~gt~~~l~~~~~~l~~~~~lvl~~D~i~~~~~~~~l~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
+. +..|++++++.+++.+.+++++|++||.+++.++.++++.|. +.++.+++.....+ .+
T Consensus 77 ~~~~~~g~~~~l~~~~~~~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~ 139 (221)
T cd06422 77 EPDELLETGGGIKKALPLLGDEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP-----------------GH 139 (221)
T ss_pred CCCcccccHHHHHHHHHhcCCCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC-----------------CC
Confidence 33 457999999999998866789999999999999999999998 45566666544322 13
Q ss_pred CcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCccccccccchhhH
Q 013012 161 GRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240 (451)
Q Consensus 161 ~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~~~s~~~d~lp~ 240 (451)
..|+.+.+|+++++ ..+. +|+ ..+++++|+|+|++++|..+.+. .+ + -.|+++.
T Consensus 140 ~~~g~v~~d~~~~v-~~~~-----~~~----------------~~~~~~~Giyi~~~~~l~~l~~~--~~-~-~~d~~~~ 193 (221)
T cd06422 140 NGVGDFSLDADGRL-RRGG-----GGA----------------VAPFTFTGIQILSPELFAGIPPG--KF-S-LNPLWDR 193 (221)
T ss_pred CCcceEEECCCCcE-eecc-----cCC----------------CCceEEEEEEEEcHHHHhhCCcC--cc-c-HHHHHHH
Confidence 46788888887654 3332 222 12678999999999999765322 11 1 2467777
Q ss_pred HHHh
Q 013012 241 LVRS 244 (451)
Q Consensus 241 l~~~ 244 (451)
++++
T Consensus 194 l~~~ 197 (221)
T cd06422 194 AIAA 197 (221)
T ss_pred HHHc
Confidence 6643
No 44
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.96 E-value=1.1e-27 Score=227.77 Aligned_cols=232 Identities=13% Similarity=0.214 Sum_probs=167.4
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhcc--------
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-------- 74 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~-------- 74 (451)
++|||||||.|+||+|+ |...||+|+|++|+|+|+|+|+++.++|+++++|++++. .+.+.+|+.+.+.
T Consensus 9 ~~aiIlaaG~g~Rl~~~-t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~--~~~i~~~~~~~~~~~~~l~~~ 85 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPA-TKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSS--KNSIENHFDTSFELEAMLEKR 85 (302)
T ss_pred eEEEEECCcCCccCCCc-cCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCC--HHHHHHHHccchhhhhhhhhh
Confidence 68999999999999999 889999999999999999999999999999999999865 3456666643110
Q ss_pred --------------CceeeEEEEcCCCCChHHHHHHHHhcCCCCcEEEEcCCccC--------CCCchHHHHHHHhcCce
Q 013012 75 --------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVS--------DVPPGAVTAAHRRHDAV 132 (451)
Q Consensus 75 --------------~~~~~~i~~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D~i~--------~~~~~~~l~~~~~~~~~ 132 (451)
....+.++.+.+..||+++++.+.+++.+++|+|++||.+. +.++.++++.|.+.+++
T Consensus 86 ~~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~ 165 (302)
T PRK13389 86 VKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS 165 (302)
T ss_pred hhhHHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHhcCCC
Confidence 01123445556679999999999888866789999999655 37999999999888776
Q ss_pred EEEEEeeeccCCCccCCCCCCcccCCCCCcccEEEecCC------CceEEEeeccccccccccccHHHHhhcCeeEEecC
Q 013012 133 VTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPT------KQFLLHIATGAELEKDTRIRKSILRAVGQMDIRAD 206 (451)
Q Consensus 133 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~------~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~ 206 (451)
++++...+ .+..||++..|.. ...+..+. ||+.. ....++
T Consensus 166 -tl~~~~~~-----------------~~~~yGvv~~~~~~~~~~~~~~V~~~~-----EKp~~-----------~~~~s~ 211 (302)
T PRK13389 166 -QIMVEPVA-----------------DVTAYGVVDCKGVELAPGESVPMVGVV-----EKPKA-----------DVAPSN 211 (302)
T ss_pred -EEEEEEcc-----------------cCCcceEEEecCcccccCCcceEEEEE-----ECCCC-----------CCCCcc
Confidence 55554432 2567899988641 12355555 33310 011357
Q ss_pred CccceEEeechHHHHHHHhcCc---cccccccchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCcc
Q 013012 207 LMDAHMYAFNRSVLQEVLDQKD---KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFH 283 (451)
Q Consensus 207 l~~~giYi~~~~~l~~~~~~~~---~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (451)
++++|+|+|++++|+.+ +... ..+..-+|+++.++++.
T Consensus 212 ~~~~GiYi~~~~il~~l-~~~~~~~~~e~~l~d~i~~l~~~~-------------------------------------- 252 (302)
T PRK13389 212 LAIVGRYVLSADIWPLL-AKTPPGAGDEIQLTDAIDMLIEKE-------------------------------------- 252 (302)
T ss_pred EEEEEEEEECHHHHHHH-HhCCCCCCCeeeHHHHHHHHHHcC--------------------------------------
Confidence 89999999999999644 4321 11111246666665431
Q ss_pred ccccCCCCCCCCCCCcceeEEEEeccchhhhhccCHHHHHHHchhc
Q 013012 284 ELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV 329 (451)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~y~~~~~~~ 329 (451)
++.+| ...++|.+++++++|.+++..+
T Consensus 253 -----------------~v~~~--~~~G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 253 -----------------TVEAY--HMKGKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred -----------------CEEEE--EeeeEEEeCCCHHHHHHHHHHH
Confidence 23344 3468999999999999998875
No 45
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.96 E-value=7.6e-28 Score=225.05 Aligned_cols=224 Identities=19% Similarity=0.320 Sum_probs=167.7
Q ss_pred EEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEE---
Q 013012 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV--- 81 (451)
Q Consensus 5 avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i--- 81 (451)
|||||||.|+||+|+ |...||+|+|++|+|||+|+++.+..+|+++|+|++++. .+.+++|+.+......++.+
T Consensus 1 aiilaaG~g~Rl~pl-t~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~~~~~ 77 (253)
T cd02524 1 VVILAGGLGTRLSEE-TELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYK--GHVIKEYFLNYFLHNSDVTIDLG 77 (253)
T ss_pred CEEEecCCccccCCc-cCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCC--HHHHHHHHHhhhhhcCceeEeec
Confidence 699999999999999 999999999999999999999999999999999999865 45677777653211111111
Q ss_pred ------------------EEcCCCCChHHHHHHHHhcCCC-CcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeecc
Q 013012 82 ------------------ATVPEDVGTAGALRAIAHHLTA-KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142 (451)
Q Consensus 82 ------------------~~~~~~~gt~~~l~~~~~~l~~-~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~ 142 (451)
+......||+++++.+++.+.+ ++|++++||.+++.++..+++.|.+.++++|+++.. +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~-~- 155 (253)
T cd02524 78 TNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH-P- 155 (253)
T ss_pred ccceeeecccccccceeecccCcccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec-C-
Confidence 1112246799999999999865 789999999999999999999999888888876542 1
Q ss_pred CCCccCCCCCCcccCCCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHH
Q 013012 143 SGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQE 222 (451)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~ 222 (451)
+..|+++.+|+++++. .+. +|+. ..+.++++|+|+|++++|+.
T Consensus 156 -----------------~~~~g~v~~d~~g~V~-~~~-----ekp~--------------~~~~~i~~Giyi~~~~l~~~ 198 (253)
T cd02524 156 -----------------PGRFGELDLDDDGQVT-SFT-----EKPQ--------------GDGGWINGGFFVLEPEVFDY 198 (253)
T ss_pred -----------------CCcccEEEECCCCCEE-EEE-----ECCC--------------CCCceEEEEEEEECHHHHHh
Confidence 3457889999887654 443 3321 01357889999999999875
Q ss_pred HHhcCccccccccchhhHHHHhccccccccCCCCCCccccccCCCcchhhhhccCCCCCccccccCCCCCCCCCCCccee
Q 013012 223 VLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKC 302 (451)
Q Consensus 223 ~~~~~~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (451)
+... ..++.+|+++.+++++ ++
T Consensus 199 l~~~---~~~~~~d~l~~li~~~-------------------------------------------------------~v 220 (253)
T cd02524 199 IDGD---DTVFEREPLERLAKDG-------------------------------------------------------EL 220 (253)
T ss_pred hccc---cchhhHHHHHHHHhcC-------------------------------------------------------CE
Confidence 5322 2233457777776532 23
Q ss_pred EEEEeccchhhhhccCHHHHHHHchhcc
Q 013012 303 CVYIASNSKYCVRLNSIQAFMDINRDVI 330 (451)
Q Consensus 303 ~~~~~~~~~~~~~i~~~~~y~~~~~~~l 330 (451)
++| ...+||.+++++++|.++...+.
T Consensus 221 ~~~--~~~g~w~~I~t~~~~~~~~~~~~ 246 (253)
T cd02524 221 MAY--KHTGFWQCMDTLRDKQTLEELWN 246 (253)
T ss_pred EEE--ecCCEEEeCcCHHHHHHHHHHHH
Confidence 344 34579999999999999886653
No 46
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.95 E-value=4.8e-27 Score=215.71 Aligned_cols=198 Identities=31% Similarity=0.491 Sum_probs=148.4
Q ss_pred EEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEc
Q 013012 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (451)
Q Consensus 5 avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 84 (451)
|||||||.|+||+|+ |...||+|+|++|+|||+|+++++.++|+++++|+++++ .+.+.+++.+.+.....+.+...
T Consensus 1 aiIlaaG~g~R~~~~-t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~--~~~i~~~~~~~~~~~~~~~~~~~ 77 (223)
T cd06915 1 AVILAGGLGTRLRSV-VKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYL--AEQIEEYFGDGYRGGIRIYYVIE 77 (223)
T ss_pred CEEecCCcccccCcc-cCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccC--HHHHHHHHcCccccCceEEEEEC
Confidence 699999999999999 889999999999999999999999999999999999854 34566666542211122334444
Q ss_pred CCCCChHHHHHHHHhcCCCCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccCCCCCccc
Q 013012 85 PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN 164 (451)
Q Consensus 85 ~~~~gt~~~l~~~~~~l~~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (451)
....|++++++.+++.+..+++++++||.+.+.++..+++.|++.++++++++...+ ....|+
T Consensus 78 ~~~~G~~~~l~~a~~~~~~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 140 (223)
T cd06915 78 PEPLGTGGAIKNALPKLPEDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVP-----------------DASRYG 140 (223)
T ss_pred CCCCcchHHHHHHHhhcCCCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECC-----------------CCCcce
Confidence 567899999999999886678999999988889999999999888788777766532 134578
Q ss_pred EEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCccccccccchhhHHHHh
Q 013012 165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRS 244 (451)
Q Consensus 165 ~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~~~s~~~d~lp~l~~~ 244 (451)
.+.+|+++++ ..+. +|+. ...++++++|+|+|++++|..+... ..++.+|+++.++.+
T Consensus 141 ~v~~d~~~~v-~~~~-----ek~~-------------~~~~~~~~~Giy~~~~~~l~~~~~~---~~~~~~~~~~~l~~~ 198 (223)
T cd06915 141 NVTVDGDGRV-IAFV-----EKGP-------------GAAPGLINGGVYLLRKEILAEIPAD---AFSLEADVLPALVKR 198 (223)
T ss_pred eEEECCCCeE-EEEE-----eCCC-------------CCCCCcEEEEEEEECHHHHhhCCcc---CCChHHHHHHHHHhc
Confidence 8888877654 4444 2321 0135688999999999999765322 223445677766643
No 47
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.95 E-value=6.9e-27 Score=214.23 Aligned_cols=194 Identities=22% Similarity=0.423 Sum_probs=144.2
Q ss_pred EEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEc
Q 013012 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (451)
Q Consensus 5 avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 84 (451)
|||||||.|+||+|+ |.+.||+|+|++|+|||+|+|++|.++|+++++|++++. .+.+.+++.+.......+.++.+
T Consensus 1 ~vIlaaG~g~R~~pl-t~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~--~~~i~~~~~~~~~~~~~i~~~~~ 77 (220)
T cd06426 1 VVIMAGGKGTRLRPL-TENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYL--AEMIEDYFGDGSKFGVNISYVRE 77 (220)
T ss_pred CEEecCCCccccCcc-cCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccC--HHHHHHHHCCccccCccEEEEEC
Confidence 699999999999999 899999999999999999999999999999999999865 34566766542111223444445
Q ss_pred CCCCChHHHHHHHHhcCCCCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccCCCCCccc
Q 013012 85 PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN 164 (451)
Q Consensus 85 ~~~~gt~~~l~~~~~~l~~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (451)
+...|++++++.+.+.. +++++|++||.+.+.++..+++.|++.++++++++.... ....|+
T Consensus 78 ~~~~g~~~~l~~~~~~~-~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------------~~~~~g 139 (220)
T cd06426 78 DKPLGTAGALSLLPEKP-TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYE-----------------VQVPYG 139 (220)
T ss_pred CCCCcchHHHHHHHhhC-CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcC-----------------CCCcce
Confidence 56789999998877665 678999999999999999999999988888887765432 124578
Q ss_pred EEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCccccccccchhhHHHHh
Q 013012 165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRS 244 (451)
Q Consensus 165 ~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~~~~s~~~d~lp~l~~~ 244 (451)
++..|+ ++ +..+. ||+. .+.++++|+|+|+++++..+ ++.. +.++ .++++.++++
T Consensus 140 ~~~~d~-~~-v~~~~-----ek~~---------------~~~~~~~Giy~~~~~~~~~i-~~~~-~~~l-~~~~~~~i~~ 194 (220)
T cd06426 140 VVETEG-GR-ITSIE-----EKPT---------------HSFLVNAGIYVLEPEVLDLI-PKNE-FFDM-PDLIEKLIKE 194 (220)
T ss_pred EEEECC-CE-EEEEE-----ECCC---------------CCCeEEEEEEEEcHHHHhhc-CCCC-CcCH-HHHHHHHHHC
Confidence 888885 54 44554 3321 13578999999999998754 3322 1222 3566666553
No 48
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.95 E-value=1.4e-26 Score=211.70 Aligned_cols=199 Identities=29% Similarity=0.503 Sum_probs=151.1
Q ss_pred EEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEc
Q 013012 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (451)
Q Consensus 5 avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 84 (451)
|||||||.|+||+|+ |..+||+|+|++|+|||+|+++++.++|+++++|++++. .+.+.+++.+.......+.++.+
T Consensus 1 aiIlaaG~g~R~~~~-t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~--~~~i~~~~~~~~~~~~~i~~~~~ 77 (217)
T cd04181 1 AVILAAGKGTRLRPL-TDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYL--GEQIEEYFGDGSKFGVNIEYVVQ 77 (217)
T ss_pred CEEecCCcccccccc-ccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccC--HHHHHHHHcChhhcCceEEEEeC
Confidence 699999999999999 899999999999999999999999999999999999864 34666666543211233555555
Q ss_pred CCCCChHHHHHHHHhcCCCCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccCCCCCccc
Q 013012 85 PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN 164 (451)
Q Consensus 85 ~~~~gt~~~l~~~~~~l~~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (451)
+...|++++++.+++.+.+++|+|++||.+++.++.++++.|.++++++++++.+.+ .+..|+
T Consensus 78 ~~~~g~~~al~~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 140 (217)
T cd04181 78 EEPLGTAGAVRNAEDFLGDDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE-----------------DPSRYG 140 (217)
T ss_pred CCCCccHHHHHHhhhhcCCCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC-----------------CCCcce
Confidence 566899999999999886678999999999999999999999998888888876532 145688
Q ss_pred EEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCc-cccccccchhhHHHH
Q 013012 165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD-KFQSLKQDVLPYLVR 243 (451)
Q Consensus 165 ~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~-~~~s~~~d~lp~l~~ 243 (451)
++.+|+++++ ..+. ||+.. ..++++++|+|+|++++|+.+ +... ....+-.|+++.+++
T Consensus 141 ~v~~d~~~~v-~~~~-----ek~~~-------------~~~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~ 200 (217)
T cd04181 141 VVELDDDGRV-TRFV-----EKPTL-------------PESNLANAGIYIFEPEILDYI-PEILPRGEDELTDAIPLLIE 200 (217)
T ss_pred EEEEcCCCcE-EEEE-----ECCCC-------------CCCCEEEEEEEEECHHHHHhh-hhcCCcccccHHHHHHHHHh
Confidence 8999887654 4454 33210 014688999999999998644 4322 112333466666654
No 49
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.92 E-value=8.6e-24 Score=195.19 Aligned_cols=175 Identities=19% Similarity=0.285 Sum_probs=129.6
Q ss_pred EEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchh-hHHHHHhhhhhccCceeeEEE-
Q 013012 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADA-ALRVGGWISAAYVDRLHVEVA- 82 (451)
Q Consensus 5 avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~-~~~i~~~~~~~~~~~~~~~i~- 82 (451)
+||||||.|+||+|+ |...||||+|++|+|||+|+|+.+.++|+++++++++.... ..++..++... ..++.+.
T Consensus 1 ~iIlAaG~g~Rl~pl-t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~---~~~~~i~~ 76 (231)
T cd04183 1 IIIPMAGLGSRFKKA-GYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLL---APNATVVE 76 (231)
T ss_pred CEEECCcCCcccccc-CCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHh---CCCCEEEE
Confidence 489999999999999 89999999999999999999999999999999999863211 12233322211 1124443
Q ss_pred EcCCCCChHHHHHHHHhcCC-CCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccCCCCC
Q 013012 83 TVPEDVGTAGALRAIAHHLT-AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG 161 (451)
Q Consensus 83 ~~~~~~gt~~~l~~~~~~l~-~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (451)
.++...||+++++.++..+. +++|++++||.+++.++..++..|.+.+...++++.... ..
T Consensus 77 ~~~~~~g~~~~l~~a~~~l~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------~~ 138 (231)
T cd04183 77 LDGETLGAACTVLLAADLIDNDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS------------------HP 138 (231)
T ss_pred eCCCCCcHHHHHHHHHhhcCCCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC------------------CC
Confidence 34456899999999998884 477999999999999999999988877776666554321 23
Q ss_pred cccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechH-HHHH
Q 013012 162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRS-VLQE 222 (451)
Q Consensus 162 ~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~-~l~~ 222 (451)
.|+++.+|+++++ ..+. +|+. .+.++++|+|+|+++ .|..
T Consensus 139 ~~~~v~~d~~~~v-~~~~-----ek~~---------------~~~~~~~Giy~~~~~~~~~~ 179 (231)
T cd04183 139 RWSYVKLDENGRV-IETA-----EKEP---------------ISDLATAGLYYFKSGSLFVE 179 (231)
T ss_pred CeEEEEECCCCCE-EEeE-----EcCC---------------CCCccEeEEEEECcHHHHHH
Confidence 5788888887764 3333 2321 245789999999987 4433
No 50
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.92 E-value=1.8e-24 Score=195.01 Aligned_cols=128 Identities=21% Similarity=0.276 Sum_probs=103.9
Q ss_pred EEEEecCCCCCCCCCCCCCCcccccccCCc-chHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccC-----cee
Q 013012 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVD-----RLH 78 (451)
Q Consensus 5 avIlAgG~g~Rl~pl~~~~~pK~llpv~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~-----~~~ 78 (451)
|||||||.|+||+|+ |.+.||+|+|++|+ |||+|+++++.++|+++++|+++++ .+.+.+++.+.... ..+
T Consensus 1 avILAaG~gtRl~pl-t~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~--~~~i~~~~~~~~~~~~~~~~~~ 77 (200)
T cd02508 1 AIILAGGEGTRLSPL-TKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYK--SRSLNDHLGSGKEWDLDRKNGG 77 (200)
T ss_pred CEEeCCCCCcccchh-hcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCC--hHHHHHHHhCCCcccCCCCCCC
Confidence 699999999999999 88999999999999 9999999999999999999999865 34666776542110 111
Q ss_pred eEEEE------cCCCCChHHHHHHHHhcCC---CCcEEEEcCCccCCCCchHHHHHHHhcCceEEE
Q 013012 79 VEVAT------VPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTA 135 (451)
Q Consensus 79 ~~i~~------~~~~~gt~~~l~~~~~~l~---~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~ 135 (451)
+.++. ++...||+++++.+.+.+. +++|+|++||.+.+.++.++++.|+++++.+|+
T Consensus 78 ~~~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~ 143 (200)
T cd02508 78 LFILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITV 143 (200)
T ss_pred EEEeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEE
Confidence 33432 2346899999999988774 357999999999999999999999887766654
No 51
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.91 E-value=1.3e-23 Score=197.93 Aligned_cols=192 Identities=20% Similarity=0.212 Sum_probs=135.4
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCC-cchHHHHHHHHHHC-CCcEEEEEecCchhhHHHHHhhhhhccCceeeE
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~g-kpli~~~l~~l~~~-gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (451)
|++||||||.|+||+|+|....||+|+|++| +|||+|+++++... ++++++|++++. ..+.+++++.+. ...+.
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~-~~~~v~~~l~~~---~~~~~ 76 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEE-YRFLVREQLPEG---LPEEN 76 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechH-HHHHHHHHHhhc---CCCce
Confidence 5899999999999999943579999999999 99999999999998 499999999843 234555655431 12467
Q ss_pred EEEcCCCCChHHHHHHHHhcCC----CCcEEEEcCCccCC--CCchHHHHHHHh---cCceEEEEEeeeccCCCccCCCC
Q 013012 81 VATVPEDVGTAGALRAIAHHLT----AKDVLVVSGDLVSD--VPPGAVTAAHRR---HDAVVTAMICSVPVSGLSEAGSS 151 (451)
Q Consensus 81 i~~~~~~~gt~~~l~~~~~~l~----~~~~lvl~~D~i~~--~~~~~~l~~~~~---~~~~~t~~~~~~~~~~~~~~~~~ 151 (451)
++.++..+||++++..++..+. ++.++|++||++.. .++.++++.+.+ .++.+|+.+.+..
T Consensus 77 ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~---------- 146 (274)
T cd02509 77 IILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTR---------- 146 (274)
T ss_pred EEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecC----------
Confidence 7777888999999998876653 34689999996654 456666665443 5666776665422
Q ss_pred CCcccCCCCCcccEEEecCCC-c---eEEEeecccccccccc-ccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhc
Q 013012 152 GAKDKTKKPGRYNIIGMDPTK-Q---FLLHIATGAELEKDTR-IRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ 226 (451)
Q Consensus 152 ~~~~~~~~~~~~~~v~~d~~~-~---~l~~~~~~~~~ek~~~-i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~ 226 (451)
..++||+|..|++. . .+..+.| |+.. ..+..+. -...++|+|+|+|++++|...++.
T Consensus 147 -------~~t~yGyI~~~~~~~~~~~~V~~f~E-----KP~~~~a~~~~~------~g~~~wNsGiyi~~~~~l~~~l~~ 208 (274)
T cd02509 147 -------PETGYGYIEAGEKLGGGVYRVKRFVE-----KPDLETAKEYLE------SGNYLWNSGIFLFRAKTFLEELKK 208 (274)
T ss_pred -------CCCCeEEEEeCCcCCCCceEEeEEEE-----CcChHHHHHHhh------cCCeEEECceeeeeHHHHHHHHHH
Confidence 13679999998653 1 4556654 4321 1111111 012489999999999987666543
No 52
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.91 E-value=1.9e-23 Score=192.57 Aligned_cols=175 Identities=19% Similarity=0.250 Sum_probs=127.9
Q ss_pred EEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEc
Q 013012 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (451)
Q Consensus 5 avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 84 (451)
|||||||.|+||+|+ |...||+|+|++|+|||+|+++++.++|+++++|++++. .+.+.+++.+. .++.++..
T Consensus 1 aiIlAaG~g~Rl~~l-t~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~--~~~~~~~~~~~----~~~~~~~~ 73 (229)
T cd02523 1 AIILAAGRGSRLRPL-TEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYK--KEQIEELLKKY----PNIKFVYN 73 (229)
T ss_pred CEEEeccCccccchh-hCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccC--HHHHHHHHhcc----CCeEEEeC
Confidence 699999999999999 889999999999999999999999999999999999864 44666666532 24666665
Q ss_pred CC--CCChHHHHHHHHhcCCCCcEEEEcCCccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccCCCCCc
Q 013012 85 PE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR 162 (451)
Q Consensus 85 ~~--~~gt~~~l~~~~~~l~~~~~lvl~~D~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (451)
+. ..|++++++.+++++ .+++++++||.+++. ++++.|.+.++++++++..... . ....
T Consensus 74 ~~~~~~g~~~s~~~~~~~~-~~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~--------------~~~~ 134 (229)
T cd02523 74 PDYAETNNIYSLYLARDFL-DEDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTK-E--------------WEDE 134 (229)
T ss_pred cchhhhCcHHHHHHHHHHc-CCCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcc-c--------------cccc
Confidence 54 589999999999988 578999999987654 5778888888888877764211 0 1223
Q ss_pred ccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHH
Q 013012 163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL 224 (451)
Q Consensus 163 ~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~ 224 (451)
+++...|. ++ +..+. +|+.. ....+++++|+|+|+++++..+.
T Consensus 135 ~~~~~~~~-~~-v~~~~-----~k~~~------------~~~~~~~~~Giy~~~~~~~~~l~ 177 (229)
T cd02523 135 YVKDLDDA-GV-LLGII-----SKAKN------------LEEIQGEYVGISKFSPEDADRLA 177 (229)
T ss_pred ceeeecCc-cc-eEeec-----ccCCC------------cchhceEEEeEEEECHHHHHHHH
Confidence 44333332 32 22332 22210 01235789999999999987654
No 53
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=8e-22 Score=176.06 Aligned_cols=186 Identities=16% Similarity=0.308 Sum_probs=138.5
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhc---------
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY--------- 73 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~--------- 73 (451)
.+|||+|||.||||-|. |...||-||||-+||+|+|+++.+..+|+++++++++.... .+++|+...+
T Consensus 5 rKAViPaAGlGTRfLPA-TKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~--~IeDhFD~s~ELE~~L~~~ 81 (291)
T COG1210 5 RKAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKR--AIEDHFDTSYELENTLEKR 81 (291)
T ss_pred cEEEEEccCcccccccc-cccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcc--hHHHhCcCcHHHHHHHHHh
Confidence 58999999999999999 99999999999999999999999999999999999974321 3333332110
Q ss_pred ------------cCceeeEEEEcCCCCChHHHHHHHHhcCCCCcEEEEcCCccCCC---CchHHHHHHHhcCceEEEEEe
Q 013012 74 ------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDV---PPGAVTAAHRRHDAVVTAMIC 138 (451)
Q Consensus 74 ------------~~~~~~~i~~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D~i~~~---~~~~~l~~~~~~~~~~t~~~~ 138 (451)
.....+.++.|.++.|.+||+.+|..++.+++|.|+.+|.+... .+..|++.+.+.+..+. .+.
T Consensus 82 ~K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi-~v~ 160 (291)
T COG1210 82 GKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVI-GVE 160 (291)
T ss_pred CHHHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEE-EEE
Confidence 11234667788899999999999999999999999999944432 46778888888777543 334
Q ss_pred eeccCCCccCCCCCCcccCCCCCcccEEE----ecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEe
Q 013012 139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIG----MDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYA 214 (451)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~----~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi 214 (451)
+++.+ +.++||+|. .+..--.+..++ ||+. .-+..|+|.-.|-|+
T Consensus 161 ev~~e---------------~v~kYGvi~~g~~~~~~~~~v~~~V-----EKP~-----------~~~APSnlai~GRYi 209 (291)
T COG1210 161 EVPPE---------------DVSKYGVIDPGEPVEKGVYKVKGMV-----EKPK-----------PEEAPSNLAIVGRYV 209 (291)
T ss_pred ECCHH---------------HCcccceEecCccccCCeEEEEEEE-----ECCC-----------CCCCCcceeeeeeee
Confidence 44322 256799887 232212344444 4431 124568999999999
Q ss_pred echHHHHHH
Q 013012 215 FNRSVLQEV 223 (451)
Q Consensus 215 ~~~~~l~~~ 223 (451)
+++++|+.+
T Consensus 210 l~p~IFd~L 218 (291)
T COG1210 210 LTPEIFDIL 218 (291)
T ss_pred cCHHHHHHH
Confidence 999999755
No 54
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.88 E-value=3.5e-21 Score=193.99 Aligned_cols=192 Identities=20% Similarity=0.191 Sum_probs=128.8
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCC-cchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCcee-eE
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLH-VE 80 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~g-kpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~-~~ 80 (451)
|.+||||||.|+||+|+|....||+|+|+.| +|||+|+++++...++++++|+++.. +...+.+.+... ..+ .+
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~-~~~~~~~~l~~~---~~~~~~ 76 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEE-HRFIVAEQLREI---GKLASN 76 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHH-HHHHHHHHHHHc---CCCcce
Confidence 5799999999999999944458999999977 89999999999998999999888732 223444444432 111 35
Q ss_pred EEEcCCCCChHHHHHHHHhcC----CCC-cEEEEcCCcc-CC-CCchHHHHHH---HhcCceEEEEEeeeccCCCccCCC
Q 013012 81 VATVPEDVGTAGALRAIAHHL----TAK-DVLVVSGDLV-SD-VPPGAVTAAH---RRHDAVVTAMICSVPVSGLSEAGS 150 (451)
Q Consensus 81 i~~~~~~~gt~~~l~~~~~~l----~~~-~~lvl~~D~i-~~-~~~~~~l~~~---~~~~~~~t~~~~~~~~~~~~~~~~ 150 (451)
++.++..+||++++..+...+ .++ .++|++||.+ .+ .++.++++++ .+.++.+|+...+..
T Consensus 77 ~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~--------- 147 (468)
T TIGR01479 77 IILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTH--------- 147 (468)
T ss_pred EEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCC---------
Confidence 777788899999988765444 334 4899999944 33 3578887765 334555555543221
Q ss_pred CCCcccCCCCCcccEEEecCC----C-ceEEEeecccccccccc-ccHHHHhhcCeeEEecCCccceEEeechHHHHHHH
Q 013012 151 SGAKDKTKKPGRYNIIGMDPT----K-QFLLHIATGAELEKDTR-IRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL 224 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~v~~d~~----~-~~l~~~~~~~~~ek~~~-i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~ 224 (451)
..+.||+|..|+. + ..+..+.| |+.. ..+..+. .-+.++|+|||+|+.+.|...+
T Consensus 148 --------p~t~YGyI~~~~~~~~~~~~~V~~f~E-----KP~~~~a~~~l~------~g~~~wNsGif~~~~~~ll~~l 208 (468)
T TIGR01479 148 --------PETGYGYIRRGEPLAGEDVYQVQRFVE-----KPDLATAQAYLE------SGDYYWNSGMFLFRASRYLAEL 208 (468)
T ss_pred --------CCCCceEEEeCCccCCCCceEEeEEEE-----CCChHHHHHHHh------cCCeEEEeeEEEEEHHHHHHHH
Confidence 1468999998842 1 24556654 4321 1111111 1135899999999998876555
Q ss_pred hc
Q 013012 225 DQ 226 (451)
Q Consensus 225 ~~ 226 (451)
.+
T Consensus 209 ~~ 210 (468)
T TIGR01479 209 KK 210 (468)
T ss_pred HH
Confidence 43
No 55
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.87 E-value=6.7e-21 Score=175.65 Aligned_cols=179 Identities=28% Similarity=0.410 Sum_probs=132.0
Q ss_pred EEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEc
Q 013012 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (451)
Q Consensus 5 avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 84 (451)
|||||||.|+||++ ..||+|+|++|+|||+|+++++.++++++++|++++. .+.+.+++.+ .++.++..
T Consensus 1 aiIlaaG~g~R~~~----~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~--~~~i~~~~~~-----~~~~~~~~ 69 (229)
T cd02540 1 AVILAAGKGTRMKS----DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHG--AEQVKKALAN-----PNVEFVLQ 69 (229)
T ss_pred CEEEeCCCCccCCC----CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCC--HHHHHHHhCC-----CCcEEEEC
Confidence 69999999999953 5899999999999999999999999999999999854 3456665543 34566666
Q ss_pred CCCCChHHHHHHHHhcCC--CCcEEEEcCCc--cCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccCCCC
Q 013012 85 PEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKP 160 (451)
Q Consensus 85 ~~~~gt~~~l~~~~~~l~--~~~~lvl~~D~--i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
+...|++++++.+++.+. .++|+++.||. +...++..+++.|.+.++++++.+.... ++
T Consensus 70 ~~~~g~~~ai~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~-----------------~p 132 (229)
T cd02540 70 EEQLGTGHAVKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELE-----------------DP 132 (229)
T ss_pred CCCCCCHHHHHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcC-----------------CC
Confidence 677899999999998875 46799999994 5677899999999877777766655321 24
Q ss_pred CcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhc
Q 013012 161 GRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ 226 (451)
Q Consensus 161 ~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~ 226 (451)
..|+.+..|+++++. .+. +|+..-+.. ..++++++|+|+|+++.|..+++.
T Consensus 133 ~~~~~~~~~~~~~v~-~~~-----ek~~~~~~~---------~~~~~~~~giy~~~~~~~~~~l~~ 183 (229)
T cd02540 133 TGYGRIIRDGNGKVL-RIV-----EEKDATEEE---------KAIREVNAGIYAFDAEFLFEALPK 183 (229)
T ss_pred CCccEEEEcCCCCEE-EEE-----ECCCCChHH---------HhhceEEeEEEEEEHHHHHHHHHH
Confidence 467877777766644 343 222100000 113578999999998876555543
No 56
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.85 E-value=6.5e-20 Score=170.82 Aligned_cols=186 Identities=19% Similarity=0.265 Sum_probs=122.9
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeE
Q 013012 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (451)
Q Consensus 1 m~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (451)
|++.+||||||.|+|| . +|+|+|++|+|||+|+++.+.++++++++|++++ +.+..++.+. ++.
T Consensus 1 m~~~~iIlA~g~S~R~----~---~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~----~~i~~~~~~~-----~~~ 64 (245)
T PRK05450 1 MKFLIIIPARYASTRL----P---GKPLADIGGKPMIVRVYERASKAGADRVVVATDD----ERIADAVEAF-----GGE 64 (245)
T ss_pred CceEEEEecCCCCCCC----C---CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc----HHHHHHHHHc-----CCE
Confidence 8999999999999999 2 6999999999999999999999999999998863 2455555431 234
Q ss_pred EEE--cCCCCChHHHHHHHHhcC---CCCcEEEEcCC--ccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCC
Q 013012 81 VAT--VPEDVGTAGALRAIAHHL---TAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA 153 (451)
Q Consensus 81 i~~--~~~~~gt~~~l~~~~~~l---~~~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 153 (451)
++. .+...|+++... +...+ ..+.++++.|| ++....+..+++.|++.++++++++.... ++.+
T Consensus 65 v~~~~~~~~~gt~~~~~-~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~--~~~~------ 135 (245)
T PRK05450 65 VVMTSPDHPSGTDRIAE-AAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIH--DAEE------ 135 (245)
T ss_pred EEECCCcCCCchHHHHH-HHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecC--CHHH------
Confidence 433 334467765443 33332 23458999999 46677899999998877666666554431 1111
Q ss_pred cccCCCCCcccEEEecCCCceEEEeecccccc-ccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHh
Q 013012 154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELE-KDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (451)
Q Consensus 154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~e-k~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~ 225 (451)
...+..++++ +|++++++ .+.+....+ ++. .+.....+++.++|||+|++++|..+.+
T Consensus 136 ---~~~~~~~~v~-~d~~g~v~-~~~e~~~~~~~~~---------~~~~~~~~~~~~~Giy~~~~~~l~~~~~ 194 (245)
T PRK05450 136 ---AFNPNVVKVV-LDADGRAL-YFSRAPIPYGRDA---------FADSAPTPVYRHIGIYAYRRGFLRRFVS 194 (245)
T ss_pred ---hcCcCCCEEE-eCCCCcEE-EecCCCCCCCCCc---------cccccCccccEEEEEEecCHHHHHHHHh
Confidence 1234556655 88877654 443221100 000 0000123689999999999999987754
No 57
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.84 E-value=1.1e-19 Score=168.66 Aligned_cols=182 Identities=20% Similarity=0.257 Sum_probs=121.9
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHC-CCcEEEEEecCchhhHHHHHhhhhhccCceeeE
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~-gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (451)
++.|||||||.|+|| .||+|+|++|+|||+|+++.+.++ ++++++|++++ +.+.+++.++ ++.
T Consensus 1 ~~~~iIlA~g~s~R~-------~~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~----~~i~~~~~~~-----~~~ 64 (239)
T cd02517 1 KVIVVIPARYASSRL-------PGKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD----ERIADAVESF-----GGK 64 (239)
T ss_pred CEEEEEecCCCCCCC-------CCCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc----HHHHHHHHHc-----CCE
Confidence 367999999999999 279999999999999999999998 89999998863 3555655432 244
Q ss_pred EEEcC--CCCChHHHHHHHHhcCCC--CcEEEEcCC--ccCCCCchHHHHHHHhc-CceEEEEEeeeccCCCccCCCCCC
Q 013012 81 VATVP--EDVGTAGALRAIAHHLTA--KDVLVVSGD--LVSDVPPGAVTAAHRRH-DAVVTAMICSVPVSGLSEAGSSGA 153 (451)
Q Consensus 81 i~~~~--~~~gt~~~l~~~~~~l~~--~~~lvl~~D--~i~~~~~~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~ 153 (451)
++..+ ...|+++ +..+++.+.. +.+++++|| ++...++..+++.|.+. ++++++++...+ ++...
T Consensus 65 ~~~~~~~~~~gt~~-~~~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~~----- 136 (239)
T cd02517 65 VVMTSPDHPSGTDR-IAEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPIS--DEEEL----- 136 (239)
T ss_pred EEEcCcccCchhHH-HHHHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcC--CHHHc-----
Confidence 44433 3467875 5556555643 569999999 56777899999988766 667777665532 21100
Q ss_pred cccCCCCCcccEEEecCCCceEEEeeccccc-cccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHh
Q 013012 154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAEL-EKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (451)
Q Consensus 154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~-ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~ 225 (451)
.....++ |..|+++.+. .+.+.... +++. ....++++++|||+|++++|..+.+
T Consensus 137 ----~~~~~~~-v~~~~~~~v~-~~~~~~~~~~~~~------------~~~~~~~~~~Giy~~~~~~~~~~~~ 191 (239)
T cd02517 137 ----FNPNVVK-VVLDKDGYAL-YFSRSPIPYPRDS------------SEDFPYYKHIGIYAYRRDFLLRFAA 191 (239)
T ss_pred ----cCCCCCE-EEECCCCCEE-EecCCCCCCCCCC------------CCCCceeEEEEEEEECHHHHHHHHh
Confidence 0122334 4567666543 44321100 0100 0112468999999999999987754
No 58
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=5.8e-19 Score=161.43 Aligned_cols=191 Identities=24% Similarity=0.260 Sum_probs=126.2
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccC-CcchHHHHHHHHHH-CCCcEEEEEecCchhhHHHHHhhhhhccCceee
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~-gkpli~~~l~~l~~-~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~ 79 (451)
+|.+||||||.|+||||||....||+|+++. +++|++.+++++.. .+..+++|+++. ++...+++.+.+...... .
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne-~~~f~v~eql~e~~~~~~-~ 78 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNE-KYRFIVKEQLPEIDIENA-A 78 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCH-HHHHHHHHHHhhhhhccc-c
Confidence 3789999999999999999999999999995 58999999999987 678999999983 334455555544222222 2
Q ss_pred EEEEcCCCCChHHHHHHHHhcCC----CCcEEEEcCCccCCC--CchHHHHHH---HhcCceEEEEEeeeccCCCccCCC
Q 013012 80 EVATVPEDVGTAGALRAIAHHLT----AKDVLVVSGDLVSDV--PPGAVTAAH---RRHDAVVTAMICSVPVSGLSEAGS 150 (451)
Q Consensus 80 ~i~~~~~~~gt~~~l~~~~~~l~----~~~~lvl~~D~i~~~--~~~~~l~~~---~~~~~~~t~~~~~~~~~~~~~~~~ 150 (451)
.++.+|..+.|+.++..+.-.+. +.-++|++.|++... .+.+.++.- .+.+..+|....+..
T Consensus 79 ~illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~--------- 149 (333)
T COG0836 79 GIILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTR--------- 149 (333)
T ss_pred ceEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCC---------
Confidence 27778888999999887643332 123999999955443 244444432 223445555443321
Q ss_pred CCCcccCCCCCcccEEEecC-----CCceEEEeecccccccccccc-HHHHhhcCeeEEecCCccceEEeechHHHHH
Q 013012 151 SGAKDKTKKPGRYNIIGMDP-----TKQFLLHIATGAELEKDTRIR-KSILRAVGQMDIRADLMDAHMYAFNRSVLQE 222 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~v~~d~-----~~~~l~~~~~~~~~ek~~~i~-~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~ 222 (451)
-.++||+|...+ ....+..|. |||.... +..+. .+ ..++|+|+|+|+..++..
T Consensus 150 --------PeTGYGYIe~G~~~~~~~~~~V~~Fv-----EKPd~etA~~yv~-sG-----~y~WNSGmF~Fra~~~l~ 208 (333)
T COG0836 150 --------PETGYGYIETGESIAENGVYKVDRFV-----EKPDLETAKKYVE-SG-----EYLWNSGMFLFRASVFLE 208 (333)
T ss_pred --------CccCcceeecCcccccCCceEeeeee-----eCCCHHHHHHHHH-cC-----ceEeeccceEEEHHHHHH
Confidence 246899998754 233455555 4443222 22222 11 258999999999987543
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.81 E-value=1.7e-18 Score=160.53 Aligned_cols=181 Identities=20% Similarity=0.268 Sum_probs=119.1
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHC-CCcEEEEEecCchhhHHHHHhhhhhccCceee
Q 013012 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (451)
Q Consensus 1 m~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~-gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~ 79 (451)
|++.|||||+|.|+|| . +|+|+|++|+|||+|+++.+.++ ++++++|++++ +.+.+++.++ ++
T Consensus 1 m~~~aiIlA~g~s~R~----~---~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~----~~i~~~~~~~-----~~ 64 (238)
T PRK13368 1 MKVVVVIPARYGSSRL----P---GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD----QRIEDAVEAF-----GG 64 (238)
T ss_pred CcEEEEEecCCCCCCC----C---CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh----HHHHHHHHHc-----CC
Confidence 7889999999999999 2 59999999999999999999998 89999998863 2455655432 23
Q ss_pred EEEEcC--CCCChHHHHHHHHhcCCCCcEEEEcCC--ccCCCCchHHHHHHHhcCc-eEEEEEeeeccCCCccCCCCCCc
Q 013012 80 EVATVP--EDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDA-VVTAMICSVPVSGLSEAGSSGAK 154 (451)
Q Consensus 80 ~i~~~~--~~~gt~~~l~~~~~~l~~~~~lvl~~D--~i~~~~~~~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~ 154 (451)
+++..+ ...|++ .+..+.+.+..+.++++.|| ++.+.++..+++.+++.+. .++.++...+. +.+
T Consensus 65 ~v~~~~~~~~~g~~-~~~~a~~~~~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~~~------- 134 (238)
T PRK13368 65 KVVMTSDDHLSGTD-RLAEVMLKIEADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPIST--EEE------- 134 (238)
T ss_pred eEEecCccCCCccH-HHHHHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCC--HHH-------
Confidence 343332 335666 46666666655679999999 6888899999998876543 45444443321 110
Q ss_pred ccCCCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHH
Q 013012 155 DKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV 223 (451)
Q Consensus 155 ~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~ 223 (451)
..++..+++ .+++++++ ..+.+ ++...++ . ....+.+.++|+|+|++++|..+
T Consensus 135 --~~~p~~~~~-~~~~~g~v-~~~~~-----~~~~~~~-----~--~~~~~~~~n~giy~~~~~~l~~~ 187 (238)
T PRK13368 135 --FESPNVVKV-VVDKNGDA-LYFSR-----SPIPSRR-----D--GESARYLKHVGIYAFRRDVLQQF 187 (238)
T ss_pred --hcCcCCCEE-EECCCCCE-EEeeC-----CCCCCCC-----C--CCCCceeEEEEEEEeCHHHHHHH
Confidence 001334444 44555654 34432 1100000 0 00113478999999999999865
No 60
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.80 E-value=4.3e-18 Score=169.91 Aligned_cols=193 Identities=20% Similarity=0.184 Sum_probs=126.3
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCcccccccCC-cchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceee
Q 013012 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (451)
Q Consensus 1 m~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~g-kpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~ 79 (451)
|+|.+||||||.|+||||+|....||+|+|+.| +|||+++++++...++.+.+++++. .+...+++.+.... ....
T Consensus 4 ~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~-~~~~~v~~ql~~~~--~~~~ 80 (478)
T PRK15460 4 SKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNE-QHRFIVAEQLRQLN--KLTE 80 (478)
T ss_pred CceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCH-HHHHHHHHHHHhcC--Cccc
Confidence 678999999999999999954457999999965 6999999999998888888888874 33445666554321 0123
Q ss_pred EEEEcCCCCChHHHHHHHHhcC----C--CCcEEEEcCCcc-CCC-CchHHHHHHH---hcCceEEEEEeeeccCCCccC
Q 013012 80 EVATVPEDVGTAGALRAIAHHL----T--AKDVLVVSGDLV-SDV-PPGAVTAAHR---RHDAVVTAMICSVPVSGLSEA 148 (451)
Q Consensus 80 ~i~~~~~~~gt~~~l~~~~~~l----~--~~~~lvl~~D~i-~~~-~~~~~l~~~~---~~~~~~t~~~~~~~~~~~~~~ 148 (451)
+++.+|..++|+.++..+...+ . +.-++|+++|.+ .+. .+.+.++.-. +.+..+|+...+..
T Consensus 81 ~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~------- 153 (478)
T PRK15460 81 NIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDL------- 153 (478)
T ss_pred cEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCC-------
Confidence 6778888899998887654333 1 234889999954 443 2444443322 23555555444321
Q ss_pred CCCCCcccCCCCCcccEEEecCC-------C-ceEEEeecccccccccccc-HHHHhhcCeeEEecCCccceEEeechHH
Q 013012 149 GSSGAKDKTKKPGRYNIIGMDPT-------K-QFLLHIATGAELEKDTRIR-KSILRAVGQMDIRADLMDAHMYAFNRSV 219 (451)
Q Consensus 149 ~~~~~~~~~~~~~~~~~v~~d~~-------~-~~l~~~~~~~~~ek~~~i~-~~~~~~~~~~~~~s~l~~~giYi~~~~~ 219 (451)
-.+.||+|..++. + ..+..|. ||+..-. +..+. . -..++|+|||+|+.++
T Consensus 154 ----------PeTgyGYI~~g~~~~~~~~~~~~~V~~F~-----EKPd~~tA~~yl~-~-----G~y~WNsGiF~~~a~~ 212 (478)
T PRK15460 154 ----------PETGYGYIRRGEVSAGEQDTVAFEVAQFV-----EKPNLETAQAYVA-S-----GEYYWNSGMFLFRAGR 212 (478)
T ss_pred ----------CCCCCCeEEeCCccccccccCceEeeEEE-----eCCCHHHHHHHHH-c-----CCEEEecceeheeHHH
Confidence 1468999987643 1 2355555 4543222 22222 1 1258999999999987
Q ss_pred HHHHH
Q 013012 220 LQEVL 224 (451)
Q Consensus 220 l~~~~ 224 (451)
|..-+
T Consensus 213 ~l~~~ 217 (478)
T PRK15460 213 YLEEL 217 (478)
T ss_pred HHHHH
Confidence 65443
No 61
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=7.1e-17 Score=141.97 Aligned_cols=108 Identities=23% Similarity=0.370 Sum_probs=88.7
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEE
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i 81 (451)
.|+|||||||.|+||.| +.||+|+.++|+|+|+|+|++|.++|++++++|+++.. .+.++.++.++ .+..++
T Consensus 3 ~~kavILAAG~GsRlg~----~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~-~~lve~~l~~~---~~~~~i 74 (239)
T COG1213 3 PMKAVILAAGFGSRLGP----DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYR-ADLVEEFLKKY---PFNAKI 74 (239)
T ss_pred ceeEEEEecccccccCC----CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccch-HHHHHHHHhcC---CcceEE
Confidence 48999999999999954 69999999999999999999999999999999994332 45677777654 234667
Q ss_pred EEcCCC--CChHHHHHHHHhcCCCCcEEEEcCCccCCCC
Q 013012 82 ATVPED--VGTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118 (451)
Q Consensus 82 ~~~~~~--~gt~~~l~~~~~~l~~~~~lvl~~D~i~~~~ 118 (451)
+..+.+ .+|+.+|..+.+.+. +.|+++.+|.++...
T Consensus 75 v~N~~y~ktN~~~Sl~~akd~~~-~~fii~~sD~vye~~ 112 (239)
T COG1213 75 VINSDYEKTNTGYSLLLAKDYMD-GRFILVMSDHVYEPS 112 (239)
T ss_pred EeCCCcccCCceeEEeeehhhhc-CcEEEEeCCEeecHH
Confidence 666554 577999999999984 679999999887754
No 62
>PLN02917 CMP-KDO synthetase
Probab=99.70 E-value=4.8e-16 Score=147.14 Aligned_cols=183 Identities=15% Similarity=0.145 Sum_probs=117.3
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeE
Q 013012 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (451)
Q Consensus 1 m~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (451)
|++.+||||+|.|+|| . +|+|+|++|+|||+|+++.+..++..+.+|+... .+.+.+++.+ .++.
T Consensus 46 ~~i~aIIpA~G~SsR~----~---~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~~~---~e~I~~~~~~-----~~v~ 110 (293)
T PLN02917 46 SRVVGIIPARFASSRF----E---GKPLVHILGKPMIQRTWERAKLATTLDHIVVATD---DERIAECCRG-----FGAD 110 (293)
T ss_pred CcEEEEEecCCCCCCC----C---CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEECC---hHHHHHHHHH-----cCCE
Confidence 6788999999999999 2 5999999999999999999998764333444332 2355555543 1244
Q ss_pred EEEc--CCCCChHHHHHHHHhcCC--CCcEEEEcCC--ccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCc
Q 013012 81 VATV--PEDVGTAGALRAIAHHLT--AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAK 154 (451)
Q Consensus 81 i~~~--~~~~gt~~~l~~~~~~l~--~~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 154 (451)
++.. ....||+++ ..+.+.+. .+.++++.|| ++...++..+++.+.+.. ++.+++.-.+. ++
T Consensus 111 vi~~~~~~~~GT~~~-~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~~-~~iv~t~~~~~-~~--------- 178 (293)
T PLN02917 111 VIMTSESCRNGTERC-NEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP-DAVFSTAVTSL-KP--------- 178 (293)
T ss_pred EEeCCcccCCchHHH-HHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhcC-CceEEEEeeec-CH---------
Confidence 4443 344677766 56777664 3569999999 788889999999886543 33332221111 11
Q ss_pred ccCCCCCcccEEE--ecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHH
Q 013012 155 DKTKKPGRYNIIG--MDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV 223 (451)
Q Consensus 155 ~~~~~~~~~~~v~--~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~ 223 (451)
+++..||.+. .|++++.+.+.......+|+.... ...-.+.++|||+|+.+.|..+
T Consensus 179 ---~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~----------~~~i~~~n~Giy~f~~~~L~~l 236 (293)
T PLN02917 179 ---EDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVN----------PQFPYLLHLGIQSYDAKFLKIY 236 (293)
T ss_pred ---HHhcCCCceEEEECCCCeEEEeecCcCCcCCCcccc----------cccceEEEEEEEEeCHHHHHHH
Confidence 1356777764 787776664442211112332100 0011477999999999999844
No 63
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.66 E-value=9.9e-16 Score=139.53 Aligned_cols=135 Identities=15% Similarity=0.152 Sum_probs=104.1
Q ss_pred cchhhhhccCHHHHHHHchhcccccccc-CCccc-cCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEe-ceEECC
Q 013012 309 NSKYCVRLNSIQAFMDINRDVIGEANHL-SGYNF-SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGR 385 (451)
Q Consensus 309 ~~~~~~~i~~~~~y~~~~~~~l~~~~~~-~~~~~-~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~-~svig~ 385 (451)
..+||.++ ++|+++|+++|...... ..... .....+++.++.|++++.+.+++.||++|.|++++.|. +++||+
T Consensus 45 ~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~ 121 (231)
T TIGR03532 45 LFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGE 121 (231)
T ss_pred EEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEECCCCEEecCcccCCCeEECC
Confidence 36899999 99999999998754310 00000 01112356667777777777777788888888877776 489999
Q ss_pred CCEECCCcEEe-ceEECCCCEECCCcEEe---------CeEECCCCEECCCcEEc-ceEECCCCEECCCCcc
Q 013012 386 HCRIGSNVKVV-NSVVMNHVTIGDGCSIQ---------GSVICSNAQLQERVALK-DCQVLSLSTSVFLSLS 446 (451)
Q Consensus 386 ~~~ig~~~~i~-~s~i~~~~~Ig~~~~i~---------~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~~~ 446 (451)
+|.|++++.|. +++|++++.||.++.|. +++||+++.|+.+++|. ++.||++++|++++..
T Consensus 122 ~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV 193 (231)
T TIGR03532 122 GTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIV 193 (231)
T ss_pred CCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEE
Confidence 99999999996 89999999999999996 48899999999999986 6999999999988854
No 64
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=3.3e-16 Score=131.73 Aligned_cols=102 Identities=24% Similarity=0.422 Sum_probs=85.5
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEE
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~ 82 (451)
|.|||||||.||||.|| |...||+|+.|.|+|||+++|+.|.++|+.+|+||+++. .+++ +|+.+ +.+++++
T Consensus 1 ~nAIIlAAG~gsR~~pl-T~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYl--kE~F-eYLkd----Ky~vtLv 72 (231)
T COG4750 1 MNAIILAAGLGSRFVPL-TQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYL--KEQF-EYLKD----KYDVTLV 72 (231)
T ss_pred CceEEEecccccccccc-cccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeeh--HHHH-HHHHH----hcCeEEE
Confidence 57999999999999999 999999999999999999999999999999999999975 2333 55655 3468888
Q ss_pred EcCCC--CChHHHHHHHHhcCCCCcEEEEcCCcc
Q 013012 83 TVPED--VGTAGALRAIAHHLTAKDVLVVSGDLV 114 (451)
Q Consensus 83 ~~~~~--~gt~~~l~~~~~~l~~~~~lvl~~D~i 114 (451)
..+.. .....+++.+++++. +..|+.+|.+
T Consensus 73 yN~kY~~yNn~ySlyla~d~l~--ntYiidsDny 104 (231)
T COG4750 73 YNPKYREYNNIYSLYLARDFLN--NTYIIDSDNY 104 (231)
T ss_pred eCchHHhhhhHHHHHHHHHHhc--ccEEeccchH
Confidence 87764 467788999999985 4567788844
No 65
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.65 E-value=8.6e-16 Score=133.31 Aligned_cols=119 Identities=28% Similarity=0.433 Sum_probs=95.1
Q ss_pred EEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEc
Q 013012 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (451)
Q Consensus 5 avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 84 (451)
|||||||.|+|| +.||+|+|++|+|||+|+++.+.+.++++|+|+++++ ++..++.. .+++++..
T Consensus 1 ~vILa~G~s~Rm------g~~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~~----~~~~~~~~-----~~~~~v~~ 65 (160)
T PF12804_consen 1 AVILAAGKSSRM------GGPKALLPIGGKPLIERVLEALREAGVDDIVVVTGEE----EIYEYLER-----YGIKVVVD 65 (160)
T ss_dssp EEEEESSSCGGG------TSCGGGSEETTEEHHHHHHHHHHHHTESEEEEEESTH----HHHHHHTT-----TTSEEEE-
T ss_pred CEEECCcCcccC------CCCccceeECCccHHHHHHHHhhccCCceEEEecChH----HHHHHHhc-----cCceEEEe
Confidence 799999999999 3599999999999999999999999999999999853 34333322 24677665
Q ss_pred CC-CCChHHHHHHHHhcC-CCCcEEEEcCCc--cCCCCchHHHHHHHhcCceEEEEEe
Q 013012 85 PE-DVGTAGALRAIAHHL-TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMIC 138 (451)
Q Consensus 85 ~~-~~gt~~~l~~~~~~l-~~~~~lvl~~D~--i~~~~~~~~l~~~~~~~~~~t~~~~ 138 (451)
+. ..|+..+++.++..+ ..++|++++||+ +....+..+++.+.+.++++.++..
T Consensus 66 ~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 66 PEPGQGPLASLLAALSQLPSSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp STSSCSHHHHHHHHHHTSTTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred ccccCChHHHHHHHHHhcccCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 53 489999999999988 678899999995 4566889999998877776655443
No 66
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.62 E-value=8.5e-15 Score=127.29 Aligned_cols=113 Identities=20% Similarity=0.243 Sum_probs=93.9
Q ss_pred ccccCCccccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEE
Q 013012 333 ANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI 412 (451)
Q Consensus 333 ~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i 412 (451)
...+.....+.++.++++++.|++++.|+++++|+++|.|++++.|.+|+|++++.|++++.+.+|+|++++.|++++.+
T Consensus 23 ~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i 102 (163)
T cd05636 23 GAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTIT 102 (163)
T ss_pred CCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEE
Confidence 33343344445677888888888888888888999999999999999999999999999999999999999999999987
Q ss_pred e-------------------------CeEECCCCEECCCcEEc-ceEECCCCEECCCCc
Q 013012 413 Q-------------------------GSVICSNAQLQERVALK-DCQVLSLSTSVFLSL 445 (451)
Q Consensus 413 ~-------------------------~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~~ 445 (451)
. +++|++++.|+.++.|. ++.||+++.|++++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~agsv 161 (163)
T cd05636 103 ANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPGCV 161 (163)
T ss_pred cccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECCCcE
Confidence 3 47899999999998888 688999999888874
No 67
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.61 E-value=7.6e-15 Score=129.46 Aligned_cols=121 Identities=22% Similarity=0.294 Sum_probs=93.4
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEE
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~ 82 (451)
|.|||||||+|+||. ..||+|+|++|+|||+|+++++..+++++++++++++ .+.++.++.+.. ..+
T Consensus 1 m~aIILAgG~gsRmg-----~~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~--~~~~~~~l~~~~-----~~~- 67 (183)
T TIGR00454 1 MDALIMAGGKGTRLG-----GVEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPH--TPKTEEYINSAY-----KDY- 67 (183)
T ss_pred CeEEEECCccCccCC-----CCCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCC--HHHHHHHHhhcC-----cEE-
Confidence 579999999999993 2799999999999999999999988999999999754 335566664321 122
Q ss_pred EcCCCCChHHHHHHHHhcCC-CCcEEEEcCC--ccCCCCchHHHHHHHhcCceEEEE
Q 013012 83 TVPEDVGTAGALRAIAHHLT-AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAM 136 (451)
Q Consensus 83 ~~~~~~gt~~~l~~~~~~l~-~~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~~t~~ 136 (451)
......|...++..+++.+. .++|++++|| ++....+..+++.+...+.....+
T Consensus 68 ~~~~g~G~~~~l~~al~~~~~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~ 124 (183)
T TIGR00454 68 KNASGKGYIEDLNECIGELYFSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAV 124 (183)
T ss_pred EecCCCCHHHHHHHHhhcccCCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEE
Confidence 22456888889988877542 5689999999 677889999999876655444333
No 68
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.58 E-value=1.9e-14 Score=109.43 Aligned_cols=79 Identities=44% Similarity=0.738 Sum_probs=61.3
Q ss_pred ECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEEcceEECCCCEECCCC
Q 013012 366 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVLSLSTSVFLS 444 (451)
Q Consensus 366 i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~~~ig~~~~i~~~~ 444 (451)
||+++.|++++.|++++||++|.|+++++|.+++|++++.|++++.|.+|+|++++.|++++.+.+|+||+++.|++++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence 5666666666777777778888888888887788888888888888888888888888888888888888888887765
No 69
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.58 E-value=4.4e-14 Score=122.81 Aligned_cols=88 Identities=22% Similarity=0.350 Sum_probs=82.2
Q ss_pred cCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCC
Q 013012 342 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSN 420 (451)
Q Consensus 342 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~-~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~ 420 (451)
+.+++++++++.|++++.|.++++||++|.|++++.|+ +++||++|.|+++++|.+|+|++++.|++++.+.+++|+++
T Consensus 14 i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~ 93 (163)
T cd05636 14 IKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGEN 93 (163)
T ss_pred ECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCC
Confidence 34678899999999999999999999999999999998 59999999999999999999999999999999999999999
Q ss_pred CEECCCcEE
Q 013012 421 AQLQERVAL 429 (451)
Q Consensus 421 ~~i~~~~~i 429 (451)
+.|++++.+
T Consensus 94 ~~I~~~~~i 102 (163)
T cd05636 94 VNLGAGTIT 102 (163)
T ss_pred CEECCCcEE
Confidence 999999877
No 70
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.57 E-value=9e-14 Score=128.28 Aligned_cols=187 Identities=17% Similarity=0.215 Sum_probs=113.7
Q ss_pred EEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEEE-
Q 013012 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT- 83 (451)
Q Consensus 5 avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~- 83 (451)
+||+|+|.|+|| .+|+|++++|+|||+|+++++..+++++|+|++... .+.+.+.+ .+++.+.
T Consensus 2 ~iIpA~g~s~R~-------~~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~~----~i~~~~~~-----~g~~~v~~ 65 (238)
T TIGR00466 2 VIIPARLASSRL-------PGKPLEDIFGKPMIVHVAENANESGADRCIVATDDE----SVAQTCQK-----FGIEVCMT 65 (238)
T ss_pred EEEecCCCCCCC-------CCCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCHH----HHHHHHHH-----cCCEEEEe
Confidence 899999999999 379999999999999999999988899999988632 34444432 1234333
Q ss_pred -cCCCCChHHHHHHHHhcC---CCCcEEEEcCC--ccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccC
Q 013012 84 -VPEDVGTAGALRAIAHHL---TAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT 157 (451)
Q Consensus 84 -~~~~~gt~~~l~~~~~~l---~~~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 157 (451)
.....|+. .+..+.+.+ ..+.++++.|| ++.+..+..+++.+.+.+.+++++..+.. ++.+ .
T Consensus 66 ~~~~~~Gt~-r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~--d~~~---------~ 133 (238)
T TIGR00466 66 SKHHNSGTE-RLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIH--DAEE---------A 133 (238)
T ss_pred CCCCCChhH-HHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecC--CHHH---------c
Confidence 22234543 333343332 23458889999 78888999999988655555555555432 2111 0
Q ss_pred CCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhc
Q 013012 158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ 226 (451)
Q Consensus 158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~ 226 (451)
.+|+ ...+..|.++..+.+........++. .. ..+.|.. ...+...|||.|++++|..|...
T Consensus 134 ~~p~-~vk~v~~~~g~alyfsr~~ip~~R~~-~~---~~~tpq~--~~~~~h~Giy~~~~~~L~~~~~~ 195 (238)
T TIGR00466 134 FNPN-AVKVVLDSQGYALYFSRSLIPFDRDF-FA---KRQTPVG--DNLLRHIGIYGYRAGFIEEYVAW 195 (238)
T ss_pred cCCC-ceEEEeCCCCeEEEecCCCCCCCCCc-cc---ccccccc--cceeEEEEEEeCCHHHHHHHHhC
Confidence 1122 22344576666555433211111110 00 0001100 11356899999999999988643
No 71
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.56 E-value=3.8e-14 Score=125.27 Aligned_cols=100 Identities=19% Similarity=0.302 Sum_probs=75.8
Q ss_pred ceeCCCCeeCCCcEECCCCEECCCCEECCCCEEe----ceEECCCCEECCCcEE-----eceEECCCCEECCCcEEeCeE
Q 013012 346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKV-----VNSVVMNHVTIGDGCSIQGSV 416 (451)
Q Consensus 346 ~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~----~svig~~~~ig~~~~i-----~~s~i~~~~~Ig~~~~i~~~i 416 (451)
..|++++.|++++.|.+++.||++|.|+++|.|. +.+||++|.||++|.| .+|+|+++++||+++.|.+|+
T Consensus 9 p~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~si 88 (192)
T TIGR02287 9 PVVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCI 88 (192)
T ss_pred CcCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCE
Confidence 3456666666666666666777777777777765 4688888888888888 368899999999988888888
Q ss_pred ECCCCEECCCcEEc-ceEECCCCEECCCCc
Q 013012 417 ICSNAQLQERVALK-DCQVLSLSTSVFLSL 445 (451)
Q Consensus 417 i~~~~~i~~~~~i~-~~~ig~~~~i~~~~~ 445 (451)
|++++.|+.++.+. +++||++++|++++.
T Consensus 89 Ig~~~~IG~ga~I~~g~~IG~~s~Vgags~ 118 (192)
T TIGR02287 89 VGRNALVGMNAVVMDGAVIGENSIVAASAF 118 (192)
T ss_pred ECCCCEECCCcccCCCeEECCCCEEcCCCE
Confidence 88888888888776 377777777777663
No 72
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.56 E-value=1.6e-13 Score=126.25 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=90.2
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCC-CcEEEEEecCchhhHHHHHhhhhhccCceee
Q 013012 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (451)
Q Consensus 1 m~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~g-i~~iivv~~~~~~~~~i~~~~~~~~~~~~~~ 79 (451)
|++.|||||||.|+|| +.+.||+|++++|+|||+|+++.+..++ +++++|+++... .+.+....... ...+
T Consensus 2 ~~~~~iILAaG~s~R~----g~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~-~~~~~~~~~~~---~~~~ 73 (227)
T PRK00155 2 MMVYAIIPAAGKGSRM----GADRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDD-RPDFAELLLAK---DPKV 73 (227)
T ss_pred CceEEEEEcCcccccc----CCCCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHH-HHHHHHHhhcc---CCce
Confidence 6789999999999999 5668999999999999999999998865 899999998442 12222211110 0123
Q ss_pred EEEEcCCCCChHHHHHHHHhcCC-CCcEEEEcCC--ccCCCCchHHHHHHHhcCc
Q 013012 80 EVATVPEDVGTAGALRAIAHHLT-AKDVLVVSGD--LVSDVPPGAVTAAHRRHDA 131 (451)
Q Consensus 80 ~i~~~~~~~gt~~~l~~~~~~l~-~~~~lvl~~D--~i~~~~~~~~l~~~~~~~~ 131 (451)
.++ ....+.+++++.+++.+. .+.++++.|| ++....++.+++.+.+.+.
T Consensus 74 ~~~--~~~~~~~~sv~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~ 126 (227)
T PRK00155 74 TVV--AGGAERQDSVLNGLQALPDDDWVLVHDAARPFLTPDDIDRLIEAAEETGA 126 (227)
T ss_pred EEe--CCcchHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCCC
Confidence 332 333467899999988873 3568899999 7888899999998876543
No 73
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.56 E-value=6.7e-14 Score=124.13 Aligned_cols=101 Identities=17% Similarity=0.278 Sum_probs=81.3
Q ss_pred CceeCCCCeeCCCcEECCCCEECCCCEECCCCEEec----eEECCCCEECCCcEEe-----ceEECCCCEECCCcEEeCe
Q 013012 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR----SVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQGS 415 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~----svig~~~~ig~~~~i~-----~s~i~~~~~Ig~~~~i~~~ 415 (451)
...+++++.|++++.|.+++.||++|.|+++|.|+. .+||++|.||++|.|. +|+|+++++||+++.+.++
T Consensus 10 ~p~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~ 89 (196)
T PRK13627 10 IPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGC 89 (196)
T ss_pred CCccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeE
Confidence 344566666666676666777777777777777753 5889999999999885 5899999999999999999
Q ss_pred EECCCCEECCCcEEc-ceEECCCCEECCCCc
Q 013012 416 VICSNAQLQERVALK-DCQVLSLSTSVFLSL 445 (451)
Q Consensus 416 ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~~ 445 (451)
+||+++.||.++++. +++||++++|+++|-
T Consensus 90 vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~ 120 (196)
T PRK13627 90 VIGRDALVGMNSVIMDGAVIGEESIVAAMSF 120 (196)
T ss_pred EECCCCEECcCCccCCCcEECCCCEEcCCCE
Confidence 999999999999887 488888888888773
No 74
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.55 E-value=1.6e-13 Score=125.28 Aligned_cols=116 Identities=23% Similarity=0.302 Sum_probs=86.9
Q ss_pred eEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHC-CCcEEEEEecCchhhHHHHHhhhhhccCceeeEEE
Q 013012 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (451)
Q Consensus 4 ~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~-gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~ 82 (451)
.|||||||.|+|| ....||+|++++|+|||+|+++.+.++ ++++++|+++++. .+.+...+.. ...+.++
T Consensus 1 ~aiIlAaG~s~R~----~~~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~-~~~~~~~~~~----~~~~~~~ 71 (217)
T TIGR00453 1 SAVIPAAGRGTRF----GSGVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPED-QEFFQKYLVA----RAVPKIV 71 (217)
T ss_pred CEEEEcCcccccC----CCCCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHH-HHHHHHHhhc----CCcEEEe
Confidence 3799999999999 445799999999999999999999987 7999999997432 2233332221 1112333
Q ss_pred EcCCCCChHHHHHHHHhcC-CCCcEEEEcCC--ccCCCCchHHHHHHHhcC
Q 013012 83 TVPEDVGTAGALRAIAHHL-TAKDVLVVSGD--LVSDVPPGAVTAAHRRHD 130 (451)
Q Consensus 83 ~~~~~~gt~~~l~~~~~~l-~~~~~lvl~~D--~i~~~~~~~~l~~~~~~~ 130 (451)
....+..++++.+++.+ ..+.++++.|| ++....+..+++.+++.+
T Consensus 72 --~~~~~~~~sl~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~ 120 (217)
T TIGR00453 72 --AGGDTRQDSVRNGLKALKDAEWVLVHDAARPFVPKELLDRLLEALRKAG 120 (217)
T ss_pred --CCCchHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence 22335678899998877 45679999999 688888999999876643
No 75
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.54 E-value=9.8e-14 Score=119.40 Aligned_cols=87 Identities=20% Similarity=0.295 Sum_probs=44.8
Q ss_pred cEECCCCEECCCCEECCCCEEe----ceEECCCCEECCCcEE-----eceEECCCCEECCCcEEeCeEECCCCEECCCcE
Q 013012 358 TTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKV-----VNSVVMNHVTIGDGCSIQGSVICSNAQLQERVA 428 (451)
Q Consensus 358 ~~i~~~~~i~~~~~i~~~~~i~----~svig~~~~ig~~~~i-----~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~ 428 (451)
++|.+++.||++|.|+++|.|. +++||++|.|+++|+| .+|+|++++.|++++.+.+++||+++.|+.++.
T Consensus 13 a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~ 92 (155)
T cd04745 13 AVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAV 92 (155)
T ss_pred CEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCCCE
Confidence 3333334444444444444443 2455555555555555 345555555555555555555555555555555
Q ss_pred Ecc-eEECCCCEECCCC
Q 013012 429 LKD-CQVLSLSTSVFLS 444 (451)
Q Consensus 429 i~~-~~ig~~~~i~~~~ 444 (451)
|.+ ++||++++|++++
T Consensus 93 I~~g~~Ig~~~~Ig~~s 109 (155)
T cd04745 93 VMDGAVIGEESIVGAMA 109 (155)
T ss_pred EeCCCEECCCCEECCCC
Confidence 542 5555555555444
No 76
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.52 E-value=1.4e-13 Score=122.45 Aligned_cols=120 Identities=28% Similarity=0.372 Sum_probs=90.2
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEE
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~ 82 (451)
+.+||||||.|+|| . .||+|++++|+|||+|+++.+...++++++|++++.. .....+.. ..++.++
T Consensus 1 ~~~vIlAgG~s~R~----g--~~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~--~~~~~~~~-----~~~~~~~ 67 (186)
T cd04182 1 IAAIILAAGRSSRM----G--GNKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEA--DAVRAALA-----GLPVVVV 67 (186)
T ss_pred CeEEEECCCCCCCC----C--CCceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcH--HHHHHHhc-----CCCeEEE
Confidence 46899999999999 2 3999999999999999999999988999999997542 12223222 1234444
Q ss_pred EcC-CCCChHHHHHHHHhcCC--CCcEEEEcCC--ccCCCCchHHHHHHHhcCceEEE
Q 013012 83 TVP-EDVGTAGALRAIAHHLT--AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA 135 (451)
Q Consensus 83 ~~~-~~~gt~~~l~~~~~~l~--~~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~~t~ 135 (451)
..+ ...|++++++.+++.+. .+.+++++|| ++....+..+++.+.+.++.+.+
T Consensus 68 ~~~~~~~G~~~~i~~al~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~v~ 125 (186)
T cd04182 68 INPDWEEGMSSSLAAGLEALPADADAVLILLADQPLVTAETLRALIDAFREDGAGIVA 125 (186)
T ss_pred eCCChhhCHHHHHHHHHHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 333 23799999999988875 5679999999 46677888888887655554433
No 77
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.52 E-value=5.1e-13 Score=122.07 Aligned_cols=122 Identities=20% Similarity=0.278 Sum_probs=87.9
Q ss_pred eEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCC-CcEEEEEecCchhhHHHHHhhhhhccCceeeEEE
Q 013012 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (451)
Q Consensus 4 ~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~g-i~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~ 82 (451)
.+||||||.|+|| ....||+|+|++|+|||+|+++.+..++ +++++|++++.. .+.... +..... ...+.++
T Consensus 2 ~~vILAaG~s~R~----~~~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~-~~~~~~-~~~~~~-~~~~~~~ 74 (218)
T cd02516 2 AAIILAAGSGSRM----GADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDD-IDLAKE-LAKYGL-SKVVKIV 74 (218)
T ss_pred EEEEECCcccccC----CCCCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhH-HHHHHH-HHhccc-CCCeEEE
Confidence 5899999999999 3347999999999999999999999876 899999987542 112221 111111 1123333
Q ss_pred EcCCCCChHHHHHHHHhcCC---CCcEEEEcCC--ccCCCCchHHHHHHHhcCceEE
Q 013012 83 TVPEDVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVT 134 (451)
Q Consensus 83 ~~~~~~gt~~~l~~~~~~l~---~~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~~t 134 (451)
....+..++++.+++.+. .+.++++.|| ++....++.+++.+.+.++.++
T Consensus 75 --~~~~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~ 129 (218)
T cd02516 75 --EGGATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAAIP 129 (218)
T ss_pred --CCchHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEE
Confidence 334567889999988773 4568899999 7888889999998876654333
No 78
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.51 E-value=2.2e-13 Score=115.32 Aligned_cols=99 Identities=22% Similarity=0.250 Sum_probs=77.7
Q ss_pred eCCCCeeCCCcEECCCCEECCCCEECCCCEEe----ceEECCCCEECCCcEEe-----ceEECCCCEECCCcEEeCeEEC
Q 013012 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQGSVIC 418 (451)
Q Consensus 348 i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~----~svig~~~~ig~~~~i~-----~s~i~~~~~Ig~~~~i~~~ii~ 418 (451)
|++++.|.+.+.|-+++.||+++.|.++++|+ +..||+++.|.++|.|. .+.|+++++||+++.|.+|.|+
T Consensus 14 i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig 93 (176)
T COG0663 14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIG 93 (176)
T ss_pred CCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEEC
Confidence 44444444444444555555555555555554 57899999999999997 6899999999999999999999
Q ss_pred CCCEECCCcEEcc-eEECCCCEECCCCcc
Q 013012 419 SNAQLQERVALKD-CQVLSLSTSVFLSLS 446 (451)
Q Consensus 419 ~~~~i~~~~~i~~-~~ig~~~~i~~~~~~ 446 (451)
+++.||-+++|.+ |.||++++|++++..
T Consensus 94 ~~~lIGmgA~vldga~IG~~~iVgAgalV 122 (176)
T COG0663 94 DNVLIGMGATVLDGAVIGDGSIVGAGALV 122 (176)
T ss_pred CCcEEecCceEeCCcEECCCcEEccCCcc
Confidence 9999999999986 999999999998843
No 79
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.51 E-value=2.1e-13 Score=121.52 Aligned_cols=120 Identities=16% Similarity=0.265 Sum_probs=89.8
Q ss_pred EEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEc
Q 013012 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (451)
Q Consensus 5 avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 84 (451)
+||||||.|+|| +.||+|++++|+|||+|+++.+.++++++++|++++... .+...+. .+.++.++..
T Consensus 2 ~iIla~G~s~R~------g~~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~--~~~~~~~----~~~~v~~v~~ 69 (188)
T TIGR03310 2 AIILAAGLSSRM------GQNKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEAD--ELVALLA----NHSNITLVHN 69 (188)
T ss_pred eEEECCCCcccC------CCCceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHH--HHHHHhc----cCCCeEEEEC
Confidence 799999999999 369999999999999999999998899999999985431 2222111 1234555554
Q ss_pred CC-CCChHHHHHHHHh-cCCCCcEEEEcCC--ccCCCCchHHHHHHHhcCceEEEE
Q 013012 85 PE-DVGTAGALRAIAH-HLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAM 136 (451)
Q Consensus 85 ~~-~~gt~~~l~~~~~-~l~~~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~~t~~ 136 (451)
+. ..|++++++.+++ ....+.++++.|| ++....++.+++.+...+..+++.
T Consensus 70 ~~~~~g~~~si~~~l~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~ 125 (188)
T TIGR03310 70 PQYAEGQSSSIKLGLELPVQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVP 125 (188)
T ss_pred cChhcCHHHHHHHHhcCCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEe
Confidence 33 3699999999887 3334679999999 466678889998877665555443
No 80
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.50 E-value=2.1e-13 Score=103.70 Aligned_cols=79 Identities=18% Similarity=0.445 Sum_probs=73.3
Q ss_pred eCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCc
Q 013012 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV 427 (451)
Q Consensus 348 i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~ 427 (451)
|++++.|++++.+. ++.|+++|.|+++|.|++++|+++|.|+++++|.+|++++++.|++++.+.+|+||+++.|++++
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence 56778888888885 69999999999999999999999999999999999999999999999999999999999998875
No 81
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.50 E-value=3.3e-13 Score=116.94 Aligned_cols=101 Identities=11% Similarity=0.126 Sum_probs=64.7
Q ss_pred CCceeCCCCeeCCCcEEC---CCCEECCCCEECCCCEEec-----------eEECCCCEECCCcEEeceEECCCCEECCC
Q 013012 344 QNNIIHPSAELGSKTTVG---PHCMLGEGSQMGDKCSVKR-----------SVIGRHCRIGSNVKVVNSVVMNHVTIGDG 409 (451)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~---~~~~i~~~~~i~~~~~i~~-----------svig~~~~ig~~~~i~~s~i~~~~~Ig~~ 409 (451)
++.++++++.|++++.+. +++.||++|.|+++|.|.+ +.||++|.|+.+++|.+++|++++.||.+
T Consensus 16 g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~~Ig~~ 95 (164)
T cd04646 16 GDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNNVFESK 95 (164)
T ss_pred CceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCCEEeCC
Confidence 344555555555555552 3356666666666666643 34677777777777777777777777777
Q ss_pred cEE-eCeEECCCCEECCCcEEc-ceEECCCCEECCCC
Q 013012 410 CSI-QGSVICSNAQLQERVALK-DCQVLSLSTSVFLS 444 (451)
Q Consensus 410 ~~i-~~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~ 444 (451)
+.| .++.||+++.|++++.|. +..|++++++..++
T Consensus 96 a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~ 132 (164)
T cd04646 96 SFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGAD 132 (164)
T ss_pred CEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCc
Confidence 777 466777777777777766 36667776666544
No 82
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.49 E-value=3.8e-13 Score=125.43 Aligned_cols=101 Identities=17% Similarity=0.098 Sum_probs=48.0
Q ss_pred CCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEe-------------ceEECCCCEECCCcEEe--------ceEECC
Q 013012 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-------------RSVIGRHCRIGSNVKVV--------NSVVMN 402 (451)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~-------------~svig~~~~ig~~~~i~--------~s~i~~ 402 (451)
+++.|++++.|++++.|++++.||++|.|++++.|. +++||++|.|+++|+|. .++|++
T Consensus 28 ~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~ 107 (254)
T cd03351 28 PNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGN 107 (254)
T ss_pred CCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceEECC
Confidence 334444444444444444444444444444444443 34455555555555553 144444
Q ss_pred CCEECCCcEE-e------------------CeEECCCCEECCCcEEc-ceEECCCCEECCCC
Q 013012 403 HVTIGDGCSI-Q------------------GSVICSNAQLQERVALK-DCQVLSLSTSVFLS 444 (451)
Q Consensus 403 ~~~Ig~~~~i-~------------------~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~ 444 (451)
++.|++++.| . +++||+++.|+.++.|. ++.||++++|++++
T Consensus 108 ~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s 169 (254)
T cd03351 108 NNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGS 169 (254)
T ss_pred CCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCC
Confidence 4444444444 2 34555555555555554 35555555555554
No 83
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.49 E-value=5.9e-13 Score=124.19 Aligned_cols=106 Identities=20% Similarity=0.273 Sum_probs=87.2
Q ss_pred cccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEe-ceEECCCCEECCCcEEe-------------ceEECCCCE
Q 013012 340 NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-------------NSVVMNHVT 405 (451)
Q Consensus 340 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~-~svig~~~~ig~~~~i~-------------~s~i~~~~~ 405 (451)
..+.+.+.+++++.|++++.|++++.||++|.|+++|.|. +++||++|.|++++.|+ +++|+++++
T Consensus 6 a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~ 85 (254)
T cd03351 6 AIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNT 85 (254)
T ss_pred CEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCE
Confidence 3445667777788888888888888888888888888887 48999999999999996 688999999
Q ss_pred ECCCcEEe--------CeEECCCCEECCCcEEc-ceEECCCCEECCCCc
Q 013012 406 IGDGCSIQ--------GSVICSNAQLQERVALK-DCQVLSLSTSVFLSL 445 (451)
Q Consensus 406 Ig~~~~i~--------~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~~ 445 (451)
|+++|.|. .++||+++.|++++.|. +|+||+++.+.+++.
T Consensus 86 Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~ 134 (254)
T cd03351 86 IREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNAT 134 (254)
T ss_pred ECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCcc
Confidence 99999986 37889999998888885 588888777777653
No 84
>PLN02296 carbonate dehydratase
Probab=99.49 E-value=4.3e-13 Score=124.37 Aligned_cols=95 Identities=19% Similarity=0.231 Sum_probs=50.1
Q ss_pred CCCeeCCCcEECCCCEECCCCEECCCCEEe----ceEECCCCEECCCcEEe-----------ceEECCCCEECCCcEEeC
Q 013012 350 PSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVV-----------NSVVMNHVTIGDGCSIQG 414 (451)
Q Consensus 350 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~----~svig~~~~ig~~~~i~-----------~s~i~~~~~Ig~~~~i~~ 414 (451)
+++.|.+++.+.+++.||++|.|+++|.|. +++||++|.|+++|.|. +|+|+++|+||++|.|.+
T Consensus 57 ~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g 136 (269)
T PLN02296 57 KDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHG 136 (269)
T ss_pred CCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecC
Confidence 333333333333344444444444444443 23566666666666653 456666666666666666
Q ss_pred eEECCCCEECCCcEEc-ceEECCCCEECCCC
Q 013012 415 SVICSNAQLQERVALK-DCQVLSLSTSVFLS 444 (451)
Q Consensus 415 ~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~ 444 (451)
|+|++++.|+.+++|. +++|+++++|++++
T Consensus 137 ~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagS 167 (269)
T PLN02296 137 CTVEDEAFVGMGATLLDGVVVEKHAMVAAGA 167 (269)
T ss_pred CEECCCcEECCCcEECCCeEECCCCEECCCC
Confidence 6666666666666554 35555555555554
No 85
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.48 E-value=5e-13 Score=119.60 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=42.9
Q ss_pred EECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEeCeEECCCCEECCCcEEcceEECCCCEECCC
Q 013012 365 MLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVLSLSTSVFL 443 (451)
Q Consensus 365 ~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~-~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~~~ig~~~~i~~~ 443 (451)
.|+++|.|++++.+.+++|+++|.|+++++|. +++|++++.|++++.+.+++|++++.|++.+.+.+|.||.++.|+++
T Consensus 52 ~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~ 131 (193)
T cd03353 52 TIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAG 131 (193)
T ss_pred EECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceEcCCCEecccceecccEECCCCEEcCc
Confidence 33444444444444444455555555555554 45555555555555555555555555555555556677777777666
Q ss_pred C
Q 013012 444 S 444 (451)
Q Consensus 444 ~ 444 (451)
+
T Consensus 132 ~ 132 (193)
T cd03353 132 T 132 (193)
T ss_pred e
Confidence 4
No 86
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.48 E-value=4.9e-13 Score=124.09 Aligned_cols=105 Identities=16% Similarity=0.281 Sum_probs=73.4
Q ss_pred cccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEec-eEECCCCEECCCcEEe--------------------ce
Q 013012 340 NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV--------------------NS 398 (451)
Q Consensus 340 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~-svig~~~~ig~~~~i~--------------------~s 398 (451)
..+..++.|++++.|+++++|++++.||++|+|.+++.|.+ ++||++|.|+++++|+ +.
T Consensus 124 ~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V 203 (338)
T COG1044 124 VVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRV 203 (338)
T ss_pred eEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceE
Confidence 33444555555555555555666666666666666666664 7888888888888874 45
Q ss_pred EECCCCEECCCcEEe-----CeEECCCCEECCCcEEc-ceEECCCCEECCCC
Q 013012 399 VVMNHVTIGDGCSIQ-----GSVICSNAQLQERVALK-DCQVLSLSTSVFLS 444 (451)
Q Consensus 399 ~i~~~~~Ig~~~~i~-----~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~ 444 (451)
+|+++|.||.+++|. +++|++++.|...+.|. +|.||.+|.|..++
T Consensus 204 ~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~v 255 (338)
T COG1044 204 IIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQV 255 (338)
T ss_pred EECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccc
Confidence 788888888888885 47888888888777777 48888888777655
No 87
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.48 E-value=4.7e-13 Score=112.38 Aligned_cols=110 Identities=25% Similarity=0.400 Sum_probs=88.7
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEE
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~ 82 (451)
|.+||+|||+|+|| + ..-|||++++|||||.|+++.+.+ .+++++++++.+ ...++.|+.+. .++++
T Consensus 1 m~~iiMAGGrGtRm----g-~~EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~--tp~t~~~~~~~-----gv~vi 67 (177)
T COG2266 1 MMAIIMAGGRGTRM----G-RPEKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPH--TPKTKEYLESV-----GVKVI 67 (177)
T ss_pred CceEEecCCccccc----C-CCcCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCC--CHhHHHHHHhc-----CceEE
Confidence 46999999999999 2 256999999999999999999988 789999999865 34677777553 35554
Q ss_pred EcCCCCChHHHHHHHHhcCCCCcEEEEcCC--ccCCCCchHHHHHHH
Q 013012 83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHR 127 (451)
Q Consensus 83 ~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D--~i~~~~~~~~l~~~~ 127 (451)
. ....|-..-++.+++.+. .+++++++| ++.+..+..+++.+.
T Consensus 68 ~-tpG~GYv~Dl~~al~~l~-~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 68 E-TPGEGYVEDLRFALESLG-TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred E-cCCCChHHHHHHHHHhcC-CceEEEecccccCCHHHHHHHHHHHh
Confidence 3 455788899999999996 499999999 555667788887766
No 88
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.48 E-value=3.9e-13 Score=123.79 Aligned_cols=128 Identities=18% Similarity=0.299 Sum_probs=92.7
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHC-CCcEEEEEecCchhhHHHHHhhhhhccCceee
Q 013012 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (451)
Q Consensus 1 m~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~-gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~ 79 (451)
|++.+||||||.|+|| +.+.||+|++++|+|||+|+++.+..+ .+++++|+++... ...+.+++.++......+
T Consensus 1 ~~~~~iIlAaG~g~R~----g~~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~-~~~~~~~~~~~~~~~~~~ 75 (230)
T PRK13385 1 MNYELIFLAAGQGKRM----NAPLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQE-RKHVQDLMKQLNVADQRV 75 (230)
T ss_pred CceEEEEECCeecccc----CCCCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhh-HHHHHHHHHhcCcCCCce
Confidence 7789999999999999 566899999999999999999999876 4899999987432 233444443321111123
Q ss_pred EEEEcCCCCChHHHHHHHHhcCCCCc-EEEEcCC--ccCCCCchHHHHHHHhcCceEEE
Q 013012 80 EVATVPEDVGTAGALRAIAHHLTAKD-VLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA 135 (451)
Q Consensus 80 ~i~~~~~~~gt~~~l~~~~~~l~~~~-~lvl~~D--~i~~~~~~~~l~~~~~~~~~~t~ 135 (451)
.++ ....+..++++.+++.+.+.+ ++++.|| ++....++.+++.+.+.++.+.+
T Consensus 76 ~~v--~~g~~r~~sv~~gl~~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~ 132 (230)
T PRK13385 76 EVV--KGGTERQESVAAGLDRIGNEDVILVHDGARPFLTQDIIDRLLEGVAKYGAAICA 132 (230)
T ss_pred EEc--CCCchHHHHHHHHHHhccCCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEE
Confidence 332 344556799999988775434 7788899 78888899999988766544433
No 89
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.47 E-value=7.3e-13 Score=123.53 Aligned_cols=85 Identities=20% Similarity=0.229 Sum_probs=38.4
Q ss_pred CceeCCCCeeCCCcEECCCCEECCCCEECCCCEEe-------------ceEECCCCEECCCcEEe--------ceEECCC
Q 013012 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-------------RSVIGRHCRIGSNVKVV--------NSVVMNH 403 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~-------------~svig~~~~ig~~~~i~--------~s~i~~~ 403 (451)
++.+++++.|++++.|.+++.||++|.|++++.|. +++||++|.|+++|+|. .++|+++
T Consensus 28 ~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~ 107 (254)
T TIGR01852 28 GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNN 107 (254)
T ss_pred CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCC
Confidence 33344444444444444444444444444444443 34555555555555553 2344444
Q ss_pred CEECCCcEE-eCeEECCCCEECCCcEE
Q 013012 404 VTIGDGCSI-QGSVICSNAQLQERVAL 429 (451)
Q Consensus 404 ~~Ig~~~~i-~~~ii~~~~~i~~~~~i 429 (451)
+.|++++.| .+|+||+++.|+.++.+
T Consensus 108 ~~I~~~~~I~~~~~Ig~~~~i~~~~~i 134 (254)
T TIGR01852 108 NLLMAYSHIAHDCVVGNHVILANNATL 134 (254)
T ss_pred CEECCCCEEccCCEECCCCEECCCCEE
Confidence 444444444 23444444444443333
No 90
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.47 E-value=5.8e-13 Score=122.13 Aligned_cols=123 Identities=13% Similarity=0.166 Sum_probs=88.9
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCC-CcEEEEEecCchhhHHHHHhhhhhccCceeeE
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~g-i~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (451)
++.|||||||.|+|| . +|+|++++|+|||+|+++.+.+++ +++|+|++... .+.++..+.. ....
T Consensus 1 ~~~~iIlA~G~s~R~----~---~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~~~----~i~~~~~~~~---~~~~ 66 (223)
T cd02513 1 KILAIIPARGGSKGI----P---GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDDE----EIAEVARKYG---AEVP 66 (223)
T ss_pred CeEEEEecCCCCCCC----C---CcccchhCCccHHHHHHHHHHhCCCCCEEEEECCcH----HHHHHHHHhC---CCce
Confidence 467999999999999 2 599999999999999999999887 78888776422 3333333211 1011
Q ss_pred EEE----cCCCCChHHHHHHHHhcCCC-----CcEEEEcCC--ccCCCCchHHHHHHHhcCceEEEEEe
Q 013012 81 VAT----VPEDVGTAGALRAIAHHLTA-----KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMIC 138 (451)
Q Consensus 81 i~~----~~~~~gt~~~l~~~~~~l~~-----~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~~t~~~~ 138 (451)
+.. ..+..|+.++++.+++.+.. +.++++.|| ++...++..+++.+.+.+++.++.+.
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~ 135 (223)
T cd02513 67 FLRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVT 135 (223)
T ss_pred eeCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 221 12335888999988776532 579999999 68888999999998876666555444
No 91
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.47 E-value=7.2e-13 Score=100.48 Aligned_cols=77 Identities=25% Similarity=0.475 Sum_probs=58.3
Q ss_pred eCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeC-eEECCCCEEC
Q 013012 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG-SVICSNAQLQ 424 (451)
Q Consensus 348 i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~-~ii~~~~~i~ 424 (451)
+++++.|++++.|+++++|+++|.|+++|.|++++|++++.|+++++|.+|++++++.|++++.+.+ ++|++++.|+
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~ 79 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIK 79 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEEC
Confidence 4667777777777777778888888888888888888888888888888888888888888777765 6666665554
No 92
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.46 E-value=1.4e-12 Score=113.65 Aligned_cols=103 Identities=12% Similarity=0.163 Sum_probs=82.3
Q ss_pred CCceeCCCCeeCCCcEECC----CCEECCCCEECCCCEEe-----ceEECCCCEECCCcEEec-eEECCCCEECCCcEEe
Q 013012 344 QNNIIHPSAELGSKTTVGP----HCMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVN-SVVMNHVTIGDGCSIQ 413 (451)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~----~~~i~~~~~i~~~~~i~-----~svig~~~~ig~~~~i~~-s~i~~~~~Ig~~~~i~ 413 (451)
++..+++++.|++++.|+. ++.||++|.|++++.|. ++.||++|.|++++.|.+ ++|++++.||.++.|.
T Consensus 19 ~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~ 98 (167)
T cd00710 19 GDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVF 98 (167)
T ss_pred eeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECCCCEEE
Confidence 3455556666666666544 35677788888888774 477899999999999985 9999999999999999
Q ss_pred CeEECCCCEECCCcEEcceEECCCCEECCCCcc
Q 013012 414 GSVICSNAQLQERVALKDCQVLSLSTSVFLSLS 446 (451)
Q Consensus 414 ~~ii~~~~~i~~~~~i~~~~ig~~~~i~~~~~~ 446 (451)
++.||+++.|+.++.|.++.|++++++++++..
T Consensus 99 ~~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~~~~v 131 (167)
T cd00710 99 NAKVGDNCVIGHNAVVDGVEIPPGRYVPAGAVI 131 (167)
T ss_pred CCEECCCCEEcCCCEEeCCEeCCCCEECCCCEE
Confidence 999999999999999988888999988887753
No 93
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.46 E-value=5.9e-13 Score=100.76 Aligned_cols=76 Identities=36% Similarity=0.581 Sum_probs=44.9
Q ss_pred ECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEEcc-eEECCCCEEC
Q 013012 366 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD-CQVLSLSTSV 441 (451)
Q Consensus 366 i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~-~~ig~~~~i~ 441 (451)
|+++|.|++++.|.+++||++|.|+++++|.+++|+++++|++++.|.+++|++++.|++++.+.+ +++|+++.++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~ 78 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVE 78 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEEC
Confidence 344445555555555556666666666666666666666666666666666666666666666654 6666655553
No 94
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.46 E-value=4.9e-13 Score=123.64 Aligned_cols=121 Identities=21% Similarity=0.304 Sum_probs=89.0
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHH-CCCcEEEEEecCchhhHHHHHhhhhhccCceeeE
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~-~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (451)
++.+||||||.|+|| +...||+|++++|+|||+|+++.+.. .++++++|+++... .+.++..+..+ +..
T Consensus 24 ~i~aIILAAG~gsRm----g~~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~-~~~~~~~~~~~-----~~~ 93 (252)
T PLN02728 24 SVSVILLAGGVGKRM----GANMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSY-RDVFEEAVENI-----DVP 93 (252)
T ss_pred ceEEEEEcccccccC----CCCCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHH-HHHHHHHHHhc-----CCc
Confidence 367999999999999 56689999999999999999999988 48999999997432 23343333221 122
Q ss_pred EEEcCCCCChHHHHHHHHhcCCCCcEEEEcCC----ccCCCCchHHHHHHHhcCce
Q 013012 81 VATVPEDVGTAGALRAIAHHLTAKDVLVVSGD----LVSDVPPGAVTAAHRRHDAV 132 (451)
Q Consensus 81 i~~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D----~i~~~~~~~~l~~~~~~~~~ 132 (451)
+.......+..++++.+++.+..+..+|+.+| ++....+..+++...+.++.
T Consensus 94 i~~v~gg~~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~~~~~~ga~ 149 (252)
T PLN02728 94 LKFALPGKERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKDAAVHGAA 149 (252)
T ss_pred eEEcCCCCchHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHHHHhhCCeE
Confidence 33334456678899999888754556677777 56666778888887776654
No 95
>PLN02472 uncharacterized protein
Probab=99.46 E-value=9.6e-13 Score=120.39 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=56.2
Q ss_pred CCCCeeCCCcEECCCCEECCCCEECCCCEEe----ceEECCCCEECCCcEEe-----------ceEECCCCEECCCcEEe
Q 013012 349 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVV-----------NSVVMNHVTIGDGCSIQ 413 (451)
Q Consensus 349 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~----~svig~~~~ig~~~~i~-----------~s~i~~~~~Ig~~~~i~ 413 (451)
++++.|.+++.+.+++.||++|.|..++.|. ..+||++|.|+++|.|. +++|+++|+||++|.|.
T Consensus 63 ~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~ 142 (246)
T PLN02472 63 AVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLR 142 (246)
T ss_pred CCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEEC
Confidence 3334444444444444444444444444443 24667777777777763 46777777777777777
Q ss_pred CeEECCCCEECCCcEEc-ceEECCCCEECCCC
Q 013012 414 GSVICSNAQLQERVALK-DCQVLSLSTSVFLS 444 (451)
Q Consensus 414 ~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~ 444 (451)
+|+|++++.||.+++|. +++||++++|++++
T Consensus 143 ~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gs 174 (246)
T PLN02472 143 SCTIEPECIIGQHSILMEGSLVETHSILEAGS 174 (246)
T ss_pred CeEEcCCCEECCCCEECCCCEECCCCEECCCC
Confidence 77777777777766665 35555555555554
No 96
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.46 E-value=9.1e-13 Score=112.98 Aligned_cols=75 Identities=23% Similarity=0.319 Sum_probs=35.0
Q ss_pred EECCCCEECCCCEEec-----eEECCCCEECCCcEEeceEECCCCEECCCcEE-eCeEECCCCEECCCcEEcc-eEECCC
Q 013012 365 MLGEGSQMGDKCSVKR-----SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI-QGSVICSNAQLQERVALKD-CQVLSL 437 (451)
Q Consensus 365 ~i~~~~~i~~~~~i~~-----svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i-~~~ii~~~~~i~~~~~i~~-~~ig~~ 437 (451)
.||++|.|+++|.|.. ++||+++.|++++++.+++|++++.||.++.+ .+++|++++++++++.+.. ..++++
T Consensus 41 ~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~ 120 (154)
T cd04650 41 YIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDY 120 (154)
T ss_pred EECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCC
Confidence 4444444444444432 44455555555555444555555555555444 2344444444444444442 444444
Q ss_pred CE
Q 013012 438 ST 439 (451)
Q Consensus 438 ~~ 439 (451)
++
T Consensus 121 ~v 122 (154)
T cd04650 121 SL 122 (154)
T ss_pred CE
Confidence 44
No 97
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.46 E-value=7.2e-13 Score=118.33 Aligned_cols=123 Identities=20% Similarity=0.270 Sum_probs=88.5
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEE
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~ 82 (451)
+.+||||||.|+|| +.+|+|++++|+|||+|+++.+.+.++++++|+++.... .+ .++........++.++
T Consensus 1 ~~~vILAgG~s~Rm------g~~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~--~~-~~~~~~~~~~~~~~~~ 71 (190)
T TIGR03202 1 IVAIYLAAGQSRRM------GENKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYA--HL-SWLDPYLLADERIMLV 71 (190)
T ss_pred CeEEEEcCCccccC------CCCceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCccc--hh-hhhhHhhhcCCCeEEE
Confidence 35899999999999 458999999999999999998888889999999975421 11 1111111111234555
Q ss_pred EcCC-CCChHHHHHHHHhcCC---CCcEEEEcCC--ccCCCCchHHHHHHHhcCceEE
Q 013012 83 TVPE-DVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVT 134 (451)
Q Consensus 83 ~~~~-~~gt~~~l~~~~~~l~---~~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~~t 134 (451)
..++ ..|++.+++.+++.+. .+.++|++|| ++....+..+++...+....+.
T Consensus 72 ~~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~~ 129 (190)
T TIGR03202 72 CCRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRPDDYV 129 (190)
T ss_pred ECCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCEE
Confidence 4443 3689999999988652 4569999999 7777788888887655444433
No 98
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.46 E-value=3.5e-13 Score=119.40 Aligned_cols=112 Identities=27% Similarity=0.347 Sum_probs=86.0
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEE
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~ 82 (451)
+.+||||||.|+|| +.||+|++++|+|||+|+++.+... +.+++|+++.... . +. ..++.++
T Consensus 1 ~~~iILAgG~s~Rm------g~~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~--~---~~------~~~~~~v 62 (181)
T cd02503 1 ITGVILAGGKSRRM------GGDKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQE--R---YA------LLGVPVI 62 (181)
T ss_pred CcEEEECCCccccC------CCCceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChH--H---Hh------hcCCcEe
Confidence 46899999999999 3499999999999999999999887 8999999885421 1 11 1124454
Q ss_pred EcC-CCCChHHHHHHHHhcCCCCcEEEEcCC--ccCCCCchHHHHHHHhcCceE
Q 013012 83 TVP-EDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVV 133 (451)
Q Consensus 83 ~~~-~~~gt~~~l~~~~~~l~~~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~~ 133 (451)
..+ ...|+..+++.+++.+..+.+++++|| ++....+..+++.+ ..+..+
T Consensus 63 ~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~ 115 (181)
T cd02503 63 PDEPPGKGPLAGILAALRAAPADWVLVLACDMPFLPPELLERLLAAA-EEGADA 115 (181)
T ss_pred eCCCCCCCCHHHHHHHHHhcCCCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCE
Confidence 433 357999999999988866789999999 46677788888776 333333
No 99
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.45 E-value=1.5e-12 Score=121.58 Aligned_cols=78 Identities=18% Similarity=0.249 Sum_probs=35.2
Q ss_pred CceeCCCCeeCCCcEECCCCEECCCCEECCCCEEe-------------ceEECCCCEECCCcEEec--------eEECCC
Q 013012 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-------------RSVIGRHCRIGSNVKVVN--------SVVMNH 403 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~-------------~svig~~~~ig~~~~i~~--------s~i~~~ 403 (451)
++.|+.++.|+++++|.+++.||++|.|+++|.|. .++||++|.|+++++|.. +.|+++
T Consensus 32 ~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~ 111 (262)
T PRK05289 32 NVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDN 111 (262)
T ss_pred CCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCCeeEECCc
Confidence 33333344444444444444444444444444443 245555555555555542 244554
Q ss_pred CEECCCcEEe-CeEECCCCE
Q 013012 404 VTIGDGCSIQ-GSVICSNAQ 422 (451)
Q Consensus 404 ~~Ig~~~~i~-~~ii~~~~~ 422 (451)
+.|+.++.|. +|+||+++.
T Consensus 112 ~~I~~~~~I~h~~~IG~~v~ 131 (262)
T PRK05289 112 NLLMAYVHVAHDCVVGNHVI 131 (262)
T ss_pred eEECCCCEECCeEEECCCeE
Confidence 4444444443 334333333
No 100
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.45 E-value=2.1e-12 Score=120.53 Aligned_cols=105 Identities=20% Similarity=0.245 Sum_probs=82.5
Q ss_pred ccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEe-ceEECCCCEECCCcEEe-------------ceEECCCCEE
Q 013012 341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-------------NSVVMNHVTI 406 (451)
Q Consensus 341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~-~svig~~~~ig~~~~i~-------------~s~i~~~~~I 406 (451)
++.+++.+++++.|++.+.|++++.|++++.|+++|.|. +++||++|.|++++.|+ +++|++++.|
T Consensus 6 ~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I 85 (254)
T TIGR01852 6 IIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTI 85 (254)
T ss_pred EeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEE
Confidence 445566677777777777777777788888888888776 58899999999999996 5889999999
Q ss_pred CCCcEEe--------CeEECCCCEECCCcEEc-ceEECCCCEECCCCc
Q 013012 407 GDGCSIQ--------GSVICSNAQLQERVALK-DCQVLSLSTSVFLSL 445 (451)
Q Consensus 407 g~~~~i~--------~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~~ 445 (451)
+++|.|. .++||+++.|++++.|. +|+||+++.+++++.
T Consensus 86 ~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~ 133 (254)
T TIGR01852 86 REFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNAT 133 (254)
T ss_pred CCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCE
Confidence 9999885 45888888888888885 577777777776653
No 101
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.44 E-value=9.9e-13 Score=99.54 Aligned_cols=78 Identities=19% Similarity=0.484 Sum_probs=70.6
Q ss_pred eeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeC-eEECCCCEECC
Q 013012 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG-SVICSNAQLQE 425 (451)
Q Consensus 347 ~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~-~ii~~~~~i~~ 425 (451)
+|++++.|++++.+.+ +.|+++|.|++++.|++++|+++|.|+++++|.+|+|++++.|++++.+.+ +++++++.|++
T Consensus 1 ~ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 1 LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED 79 (79)
T ss_pred CccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEECc
Confidence 3677888888888865 999999999999999999999999999999999999999999999999987 88888887764
No 102
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.44 E-value=1.6e-12 Score=116.47 Aligned_cols=98 Identities=9% Similarity=0.185 Sum_probs=79.2
Q ss_pred CCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe---------------
Q 013012 349 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ--------------- 413 (451)
Q Consensus 349 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~--------------- 413 (451)
++.+.|++++.| .++.||+++.|+++|.|.+++||++|.|++++.|.+++||++|.|++++.|.
T Consensus 6 ~~~~~I~~~a~i-~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~ 84 (204)
T TIGR03308 6 SPEPTLHPTAEL-TESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFT 84 (204)
T ss_pred CCCCeECCCcEE-eccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCcccccccc
Confidence 445555555666 3577888888888888888899999999999999888888888888888773
Q ss_pred -----------------------CeEECCCCEECCCcEEc-ceEECCCCEECCCCccC
Q 013012 414 -----------------------GSVICSNAQLQERVALK-DCQVLSLSTSVFLSLSS 447 (451)
Q Consensus 414 -----------------------~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~~~~ 447 (451)
+++||+++.||.++.|. +++||++++|++++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~ 142 (204)
T TIGR03308 85 YRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVT 142 (204)
T ss_pred cccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEEC
Confidence 66788999999999988 59999999999888544
No 103
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.44 E-value=8.7e-13 Score=99.84 Aligned_cols=76 Identities=33% Similarity=0.604 Sum_probs=61.6
Q ss_pred ECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEEc-ceEECCCCEEC
Q 013012 366 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVLSLSTSV 441 (451)
Q Consensus 366 i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~-~~~ig~~~~i~ 441 (451)
||+++.|++++.|.+++|+++|.|+++++|.+++|+++++|++++.|.+++|++++.|++++.+. +++|++++.++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig 78 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIG 78 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeC
Confidence 56667777777777788888888888888888888888888888888888888888888888777 47777777665
No 104
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.44 E-value=2.2e-12 Score=112.34 Aligned_cols=100 Identities=20% Similarity=0.276 Sum_probs=80.1
Q ss_pred eCCCCeeCCCcEECCCCEECCCCEECCCCEEe-----ceEECCCCEECCCcEEe-----ceEECCCCEECCCcEEeC-eE
Q 013012 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQG-SV 416 (451)
Q Consensus 348 i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~-----~svig~~~~ig~~~~i~-----~s~i~~~~~Ig~~~~i~~-~i 416 (451)
+++++.|++++.+.+++.||++|.|+++|.|. +++||++|.|++++.|. .+.|++++.|+.++.|.+ ++
T Consensus 5 ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~ 84 (167)
T cd00710 5 IDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAY 84 (167)
T ss_pred eCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEE
Confidence 45555555555555556666666666666654 47899999999999994 688999999999999975 99
Q ss_pred ECCCCEECCCcEEcceEECCCCEECCCCccC
Q 013012 417 ICSNAQLQERVALKDCQVLSLSTSVFLSLSS 447 (451)
Q Consensus 417 i~~~~~i~~~~~i~~~~ig~~~~i~~~~~~~ 447 (451)
||+++.|+.++.|.+++||+++.|++++...
T Consensus 85 Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~ 115 (167)
T cd00710 85 IGDNCFIGFRSVVFNAKVGDNCVIGHNAVVD 115 (167)
T ss_pred ECCCCEECCCCEEECCEECCCCEEcCCCEEe
Confidence 9999999999999999999999999888654
No 105
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.44 E-value=1.2e-12 Score=125.60 Aligned_cols=50 Identities=20% Similarity=0.392 Sum_probs=22.6
Q ss_pred ceeCCCCeeCCCcEECCCCEECCCCEECCCCEEe-ceEECCCCEECCCcEE
Q 013012 346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKV 395 (451)
Q Consensus 346 ~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~-~svig~~~~ig~~~~i 395 (451)
+.|++++.|+++++|++++.||++|.|++++.|. +++||++|.|+++|+|
T Consensus 122 v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vI 172 (324)
T TIGR01853 122 VEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVI 172 (324)
T ss_pred cEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEE
Confidence 3333333334444444444444444444444444 3455555555555555
No 106
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.44 E-value=9.2e-13 Score=117.98 Aligned_cols=113 Identities=22% Similarity=0.307 Sum_probs=85.1
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeE
Q 013012 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (451)
Q Consensus 1 m~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (451)
|++.+||||||.|+|| . +.||+|++++|+|||+|+++.+. .++++++|+++... +... . ..+.
T Consensus 2 ~~~~~vILA~G~s~Rm----~-~~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~--~~~~----~-----~~~~ 64 (193)
T PRK00317 2 PPITGVILAGGRSRRM----G-GVDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNL--ARYA----A-----FGLP 64 (193)
T ss_pred CCceEEEEcCCCcccC----C-CCCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCCh--HHHH----h-----cCCc
Confidence 5789999999999999 2 47999999999999999999998 67999999887431 1111 1 1133
Q ss_pred EEEcCC--CCChHHHHHHHHhcCCCCcEEEEcCC--ccCCCCchHHHHHHHhcC
Q 013012 81 VATVPE--DVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHD 130 (451)
Q Consensus 81 i~~~~~--~~gt~~~l~~~~~~l~~~~~lvl~~D--~i~~~~~~~~l~~~~~~~ 130 (451)
++.... ..|+..+++.+++....+.+++++|| ++....+..+++.+.+..
T Consensus 65 ~v~~~~~~~~g~~~~i~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~ 118 (193)
T PRK00317 65 VIPDSLADFPGPLAGILAGLKQARTEWVLVVPCDTPFIPPDLVARLAQAAGKDD 118 (193)
T ss_pred EEeCCCCCCCCCHHHHHHHHHhcCCCeEEEEcCCcCCCCHHHHHHHHHhhhcCC
Confidence 333322 36888999999887666779999999 566677888888654433
No 107
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.44 E-value=2.3e-12 Score=111.63 Aligned_cols=99 Identities=15% Similarity=0.225 Sum_probs=80.1
Q ss_pred eCCCCeeCCCcEECCCCEECCCCEECCCCEEe----ceEECCCCEECCCcEEec-----------eEECCCCEECCCcEE
Q 013012 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVVN-----------SVVMNHVTIGDGCSI 412 (451)
Q Consensus 348 i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~----~svig~~~~ig~~~~i~~-----------s~i~~~~~Ig~~~~i 412 (451)
|++++.|.+++.|.+++.||++|.|+++|.|. +++||++|.|+++|+|.+ +.|++++.|+.++.|
T Consensus 2 ~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i 81 (164)
T cd04646 2 IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKC 81 (164)
T ss_pred cCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEE
Confidence 45666666667777777777888888777774 469999999999999975 457888888888999
Q ss_pred eCeEECCCCEECCCcEEc-ceEECCCCEECCCCcc
Q 013012 413 QGSVICSNAQLQERVALK-DCQVLSLSTSVFLSLS 446 (451)
Q Consensus 413 ~~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~~~ 446 (451)
.+++||+++.|+.++.|. +++||++++|++++..
T Consensus 82 ~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV 116 (164)
T cd04646 82 EALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKL 116 (164)
T ss_pred EeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEE
Confidence 889999999999999986 5888888888877743
No 108
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.43 E-value=2.2e-12 Score=123.80 Aligned_cols=89 Identities=20% Similarity=0.327 Sum_probs=66.5
Q ss_pred ccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEe-ceEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-----
Q 013012 341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ----- 413 (451)
Q Consensus 341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~-~svig~~~~ig~~~~i~-~s~i~~~~~Ig~~~~i~----- 413 (451)
.+.+++.+++++.|+++++|++++.||++|.|+++|.|. +++||++|.|+++++|. +|+|++++.|+++|.|+
T Consensus 99 ~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg 178 (324)
T TIGR01853 99 VVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFG 178 (324)
T ss_pred EeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCcc
Confidence 344455555666666666666666777777777777775 58888888888888887 78999999999988884
Q ss_pred ----------------CeEECCCCEECCCcEE
Q 013012 414 ----------------GSVICSNAQLQERVAL 429 (451)
Q Consensus 414 ----------------~~ii~~~~~i~~~~~i 429 (451)
+++||+++.||+++.|
T Consensus 179 ~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I 210 (324)
T TIGR01853 179 YAHTANGGHVKIPQIGRVIIEDDVEIGANTTI 210 (324)
T ss_pred ceeccCCcceecCccceEEECCCcEECCCCEE
Confidence 3788888888888766
No 109
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.43 E-value=9.4e-13 Score=118.34 Aligned_cols=112 Identities=18% Similarity=0.184 Sum_probs=86.1
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeE
Q 013012 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (451)
Q Consensus 1 m~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (451)
|++.+||||||.|+|| +.+|+|++++|+|||+|+++.+... +++++|++++. +....... .++.
T Consensus 6 ~~~~~vILAgG~s~Rm------g~~K~ll~~~g~~ll~~~i~~l~~~-~~~ivvv~~~~---~~~~~~~~------~~~~ 69 (200)
T PRK02726 6 NNLVALILAGGKSSRM------GQDKALLPWQGVPLLQRVARIAAAC-ADEVYIITPWP---ERYQSLLP------PGCH 69 (200)
T ss_pred CCceEEEEcCCCcccC------CCCceeeEECCEeHHHHHHHHHHhh-CCEEEEECCCH---HHHHhhcc------CCCe
Confidence 5689999999999999 3589999999999999999999754 78898888632 12222111 1244
Q ss_pred EEEcCC-CCChHHHHHHHHhcCCCCcEEEEcCC--ccCCCCchHHHHHHHh
Q 013012 81 VATVPE-DVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRR 128 (451)
Q Consensus 81 i~~~~~-~~gt~~~l~~~~~~l~~~~~lvl~~D--~i~~~~~~~~l~~~~~ 128 (451)
++.... ..|+.++++.+++.+..+.++|++|| ++....++.+++.+..
T Consensus 70 ~i~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 70 WLREPPPSQGPLVAFAQGLPQIKTEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred EecCCCCCCChHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 544333 37999999999998876789999999 6777788888887643
No 110
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=4.2e-13 Score=132.30 Aligned_cols=90 Identities=22% Similarity=0.465 Sum_probs=78.4
Q ss_pred cccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEE-eCeEEC
Q 013012 340 NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI-QGSVIC 418 (451)
Q Consensus 340 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i-~~~ii~ 418 (451)
+.+..+..|+.++.||.++.| .|++||.||.||.+++|++|.|+++|+||+||+|++|+|+++|.|+++|.+ .+||+|
T Consensus 328 ~~v~~~~~ig~gT~Ig~g~~I-~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~ 406 (673)
T KOG1461|consen 328 VIVGANVVIGAGTKIGSGSKI-SNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLG 406 (673)
T ss_pred ccccceEEecccccccCCCee-ecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEe
Confidence 344567888899999999999 799999999999999999999999999999999999999999999999999 467777
Q ss_pred CCCEECCCcEEc
Q 013012 419 SNAQLQERVALK 430 (451)
Q Consensus 419 ~~~~i~~~~~i~ 430 (451)
.++++|++.++.
T Consensus 407 ~~VVv~~~~~l~ 418 (673)
T KOG1461|consen 407 FGVVVGRNFVLP 418 (673)
T ss_pred eeeEeCCCcccc
Confidence 776666655544
No 111
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.43 E-value=2.8e-12 Score=110.35 Aligned_cols=98 Identities=15% Similarity=0.296 Sum_probs=82.5
Q ss_pred CCceeCCCCeeCCCcEECC---CCEECCCCEECCCCEE-----eceEECCCCEECCCcEEeceEECCCCEECCCcEEe-C
Q 013012 344 QNNIIHPSAELGSKTTVGP---HCMLGEGSQMGDKCSV-----KRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-G 414 (451)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~---~~~i~~~~~i~~~~~i-----~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~-~ 414 (451)
+++.+++++.|++++.|.+ ++.||++|.|+++|.| .+++||++|.|++++.+.+++|++++.||.++.|. +
T Consensus 17 g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~g 96 (155)
T cd04745 17 GDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVVMDG 96 (155)
T ss_pred ccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCCCEEeCC
Confidence 4556667777777766654 4778889999999999 56999999999999999999999999999999996 5
Q ss_pred eEECCCCEECCCcEEc-ceEECCCCEEC
Q 013012 415 SVICSNAQLQERVALK-DCQVLSLSTSV 441 (451)
Q Consensus 415 ~ii~~~~~i~~~~~i~-~~~ig~~~~i~ 441 (451)
+.|++++.|++++.+. +..|++++++.
T Consensus 97 ~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~ 124 (155)
T cd04745 97 AVIGEESIVGAMAFVKAGTVIPPRSLIA 124 (155)
T ss_pred CEECCCCEECCCCEeCCCCEeCCCCEEe
Confidence 8999999999998887 47888888763
No 112
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.41 E-value=3.1e-12 Score=114.52 Aligned_cols=96 Identities=20% Similarity=0.295 Sum_probs=44.5
Q ss_pred ceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-CeEECCCCEEC
Q 013012 346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQ 424 (451)
Q Consensus 346 ~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~-~~ii~~~~~i~ 424 (451)
..+++++.|++++.|++++.||++|.|+++|.|+++.||++|.|+++++|.+++|++++.|++++.|. +++|++++.|+
T Consensus 16 v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig 95 (193)
T cd03353 16 VEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIG 95 (193)
T ss_pred eEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEEC
Confidence 33444444444444444444444444444444444444444444444444444444444444444443 34444444444
Q ss_pred CCcEEcceEECCCCEEC
Q 013012 425 ERVALKDCQVLSLSTSV 441 (451)
Q Consensus 425 ~~~~i~~~~ig~~~~i~ 441 (451)
+++.+.++.|++++.+.
T Consensus 96 ~~~~i~~s~ig~~~~i~ 112 (193)
T cd03353 96 NFVEIKKSTIGEGSKAN 112 (193)
T ss_pred CcEEEecceEcCCCEec
Confidence 44444444444444433
No 113
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.41 E-value=2.5e-12 Score=110.49 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=40.6
Q ss_pred EECCCCEECCCCEEec-----eEECCCCEECCCcEEeceEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-ceEECCC
Q 013012 365 MLGEGSQMGDKCSVKR-----SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVLSL 437 (451)
Q Consensus 365 ~i~~~~~i~~~~~i~~-----svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~-~~ii~~~~~i~~~~~i~-~~~ig~~ 437 (451)
+||++|.|+++|.|.. ++||++|.|+.+|.+.+++|++++.|+.++.|. +++|++++.|+.++.+. +..++++
T Consensus 40 ~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~ 119 (153)
T cd04645 40 RIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPG 119 (153)
T ss_pred EECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEeCCC
Confidence 4555555555555543 355555555555555555555555555555553 55555555555555554 2444444
Q ss_pred CEE
Q 013012 438 STS 440 (451)
Q Consensus 438 ~~i 440 (451)
+++
T Consensus 120 ~~~ 122 (153)
T cd04645 120 SLV 122 (153)
T ss_pred CEE
Confidence 444
No 114
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.40 E-value=2.9e-12 Score=110.89 Aligned_cols=116 Identities=28% Similarity=0.358 Sum_probs=95.8
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEE
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i 81 (451)
.+.+||||+|+|+|| +.+|.|+|+.|+||++++++.+.+++++++++++++.. .+...... ...++.+
T Consensus 5 ~v~~VvLAAGrssRm------G~~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~-~~~~~a~~-----~~~~~~~ 72 (199)
T COG2068 5 TVAAVVLAAGRSSRM------GQPKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRV-AEAVEALL-----AQLGVTV 72 (199)
T ss_pred ceEEEEEcccccccC------CCcceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcch-hhHHHhhh-----ccCCeEE
Confidence 468999999999999 58999999999999999999999999999999998652 22222221 2345778
Q ss_pred EEcCCC-CChHHHHHHHHhcCCCC--cEEEEcCC--ccCCCCchHHHHHHHhc
Q 013012 82 ATVPED-VGTAGALRAIAHHLTAK--DVLVVSGD--LVSDVPPGAVTAAHRRH 129 (451)
Q Consensus 82 ~~~~~~-~gt~~~l~~~~~~l~~~--~~lvl~~D--~i~~~~~~~~l~~~~~~ 129 (451)
+.+++. .|.+.|++.+.+.+..+ .++++.|| .+.+.++..+++.+..+
T Consensus 73 v~npd~~~Gls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 73 VVNPDYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred EeCcchhhhHhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 777765 89999999998888644 59999999 68899999999988877
No 115
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.40 E-value=3.1e-12 Score=118.86 Aligned_cols=10 Identities=10% Similarity=-0.130 Sum_probs=5.4
Q ss_pred ceEEeechHH
Q 013012 210 AHMYAFNRSV 219 (451)
Q Consensus 210 ~giYi~~~~~ 219 (451)
+|.-+++++.
T Consensus 56 Agaviv~~~~ 65 (338)
T COG1044 56 AGAVIVSAKD 65 (338)
T ss_pred ccEEEecHHH
Confidence 4555555554
No 116
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.40 E-value=2.5e-12 Score=102.53 Aligned_cols=78 Identities=28% Similarity=0.445 Sum_probs=67.6
Q ss_pred CeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEEcc
Q 013012 352 AELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD 431 (451)
Q Consensus 352 ~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~ 431 (451)
+.|++++.| .+++||++|.|+ ++.|++|+|+++|.|+++++|.+|+|++++.||+++.+.+|+|++++.|++++.+.+
T Consensus 2 ~~i~~~~~i-~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~ 79 (104)
T cd04651 2 PYIGRRGEV-KNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGG 79 (104)
T ss_pred ceecCCCEE-EeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECC
Confidence 455666666 568888999998 889999999999999999999999999999999999999999999999999888875
No 117
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.40 E-value=2.9e-12 Score=119.72 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=46.2
Q ss_pred CEECCCCEECCCCEEec--------eEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-ce
Q 013012 364 CMLGEGSQMGDKCSVKR--------SVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DC 432 (451)
Q Consensus 364 ~~i~~~~~i~~~~~i~~--------svig~~~~ig~~~~i~-~s~i~~~~~Ig~~~~i~-~~ii~~~~~i~~~~~i~-~~ 432 (451)
+.||++|.|+++|.|.+ ++||++|.|+.++.|. +|+|++++.++.++.+. ++.||++++|+.++.|. ++
T Consensus 81 v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v 160 (262)
T PRK05289 81 LVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFV 160 (262)
T ss_pred EEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCC
Confidence 44555555555555542 3456666666666554 55666666666655552 45566666666666555 35
Q ss_pred EECCCCEECCCCcc
Q 013012 433 QVLSLSTSVFLSLS 446 (451)
Q Consensus 433 ~ig~~~~i~~~~~~ 446 (451)
.||++++|+++|..
T Consensus 161 ~Ig~~~~Ig~gs~V 174 (262)
T PRK05289 161 RIGAHAMVGGMSGV 174 (262)
T ss_pred EECCCCEEeeecce
Confidence 56666666655543
No 118
>PLN02296 carbonate dehydratase
Probab=99.39 E-value=7.8e-12 Score=115.97 Aligned_cols=98 Identities=15% Similarity=0.270 Sum_probs=80.8
Q ss_pred CCceeCCCCeeCCCcEECCC---CEECCCCEECCCCEEe-----------ceEECCCCEECCCcEEeceEECCCCEECCC
Q 013012 344 QNNIIHPSAELGSKTTVGPH---CMLGEGSQMGDKCSVK-----------RSVIGRHCRIGSNVKVVNSVVMNHVTIGDG 409 (451)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~---~~i~~~~~i~~~~~i~-----------~svig~~~~ig~~~~i~~s~i~~~~~Ig~~ 409 (451)
+++.|++++.|+++++|.++ +.||++|.|+++|.|. +++||++|.||++|.|.+|+|++++.||.+
T Consensus 69 G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~v~IG~g 148 (269)
T PLN02296 69 GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFVGMG 148 (269)
T ss_pred cceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCCcEECCC
Confidence 34555666666666666543 3788888999998884 589999999999999999999999999999
Q ss_pred cEE-eCeEECCCCEECCCcEEc-ceEECCCCEEC
Q 013012 410 CSI-QGSVICSNAQLQERVALK-DCQVLSLSTSV 441 (451)
Q Consensus 410 ~~i-~~~ii~~~~~i~~~~~i~-~~~ig~~~~i~ 441 (451)
+.| .++.|++++.|++++.|. +..|++++++.
T Consensus 149 a~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~~ 182 (269)
T PLN02296 149 ATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVWA 182 (269)
T ss_pred cEECCCeEECCCCEECCCCEEecCCEeCCCeEEe
Confidence 998 589999999999999998 57888888853
No 119
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.39 E-value=2.4e-12 Score=125.68 Aligned_cols=119 Identities=24% Similarity=0.345 Sum_probs=89.4
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCC-CcEEEEEecCchhhHHHHHhhhhhccCceee
Q 013012 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (451)
Q Consensus 1 m~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~g-i~~iivv~~~~~~~~~i~~~~~~~~~~~~~~ 79 (451)
|++.+||||||.|+|| +.+.||+|++++|+|||+|+++.+.+.+ +++++|++++.. .+..+.+.... . .+
T Consensus 4 m~v~aIILAAG~GsRm----g~~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~-~~~~~~~~~~~---~-~v 74 (378)
T PRK09382 4 SDISLVIVAAGRSTRF----SAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDD-IAYMKKALPEI---K-FV 74 (378)
T ss_pred CcceEEEECCCCCccC----CCCCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHH-HHHHHHhcccC---C-eE
Confidence 4578999999999999 6678999999999999999999999987 799999987542 22222222110 1 12
Q ss_pred EEEEcCCCCChHHHHHHHHhcCCCCcEEEEcCC--ccCCCCchHHHHHHHhcC
Q 013012 80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHD 130 (451)
Q Consensus 80 ~i~~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D--~i~~~~~~~~l~~~~~~~ 130 (451)
.+ .....+..++++.+++.+..+.++|..|| ++....++.+++..++.+
T Consensus 75 ~~--v~gG~~r~~SV~~gL~~l~~d~VLVhdadrPfv~~e~I~~li~~~~~~~ 125 (378)
T PRK09382 75 TL--VTGGATRQESVRNALEALDSEYVLIHDAARPFVPKELIDRLIEALDKAD 125 (378)
T ss_pred EE--eCCCchHHHHHHHHHHhcCCCeEEEeeccccCCCHHHHHHHHHHhhcCC
Confidence 22 33456688999999988866668999999 677778888888776543
No 120
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=8.8e-12 Score=108.54 Aligned_cols=187 Identities=19% Similarity=0.224 Sum_probs=127.2
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeE
Q 013012 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (451)
Q Consensus 1 m~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (451)
|++.+||+|.=.+||| ..|||..|+|+|||.|+.+++.++|.++++|.+.++ .+.+.+.+. +.+
T Consensus 2 ~~~~viIPAR~~STRL-------pgKPLadI~GkpmI~rV~e~a~~s~~~rvvVATDde----~I~~av~~~-----G~~ 65 (247)
T COG1212 2 MKFVVIIPARLASTRL-------PGKPLADIGGKPMIVRVAERALKSGADRVVVATDDE----RIAEAVQAF-----GGE 65 (247)
T ss_pred CceEEEEecchhcccC-------CCCchhhhCCchHHHHHHHHHHHcCCCeEEEEcCCH----HHHHHHHHh-----CCE
Confidence 6788999999999999 569999999999999999999999999999999754 444444331 233
Q ss_pred EEE--cCCCCChHHHHHHHHhcCC---CCcEEEEcCC--ccCCCCchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCC
Q 013012 81 VAT--VPEDVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA 153 (451)
Q Consensus 81 i~~--~~~~~gt~~~l~~~~~~l~---~~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 153 (451)
.+. .+.+.||- -+..+.+.+. ++.++-+.|| ++.+..+..+++..++.++++..+..+.. ++.+
T Consensus 66 avmT~~~h~SGTd-R~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~--~~ee------ 136 (247)
T COG1212 66 AVMTSKDHQSGTD-RLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKIT--DEEE------ 136 (247)
T ss_pred EEecCCCCCCccH-HHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecC--CHHH------
Confidence 333 33456774 4555555442 2347778899 78888899999988888777766655432 2222
Q ss_pred cccCCCCCcccEEEecCCCceEEEeeccccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHhcCc
Q 013012 154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD 228 (451)
Q Consensus 154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~~~~ 228 (451)
..+|+- ..++.|.++..|+|.........+... ...-|.-.|||.|++.+|..|....+
T Consensus 137 ---~~nPN~-VKvV~d~~g~ALYFSRs~iP~~rd~~~------------~~p~l~HIGIYayr~~~L~~f~~~~p 195 (247)
T COG1212 137 ---AFNPNV-VKVVLDKEGYALYFSRAPIPYGRDNFG------------GTPFLRHIGIYAYRAGFLERFVALKP 195 (247)
T ss_pred ---hcCCCc-EEEEEcCCCcEEEEEcCCCCCcccccC------------CcchhheeehHHhHHHHHHHHHhcCC
Confidence 012332 346688888888876653322211000 01235668999999999998876543
No 121
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.39 E-value=3e-12 Score=124.66 Aligned_cols=15 Identities=7% Similarity=-0.104 Sum_probs=11.1
Q ss_pred CccceEEeechHHHH
Q 013012 207 LMDAHMYAFNRSVLQ 221 (451)
Q Consensus 207 l~~~giYi~~~~~l~ 221 (451)
...++.|++++++..
T Consensus 52 ~~~A~a~Iv~~d~~~ 66 (343)
T PRK00892 52 TTKAGAVIVSPDDAE 66 (343)
T ss_pred ccCCeEEEechhhhh
Confidence 457888999988643
No 122
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.39 E-value=2.2e-12 Score=114.82 Aligned_cols=116 Identities=22% Similarity=0.311 Sum_probs=85.6
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEE
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~ 82 (451)
+.+||||||.|+|| + +.||+|++++|+|||+|+++.+.. .+++++|++.+.. +. +... ..++.++
T Consensus 1 ~~~iILAgG~s~Rm----g-~~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~--~~---~~~~----~~~~~~i 65 (186)
T TIGR02665 1 ISGVILAGGRARRM----G-GRDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNP--ER---YAQA----GFGLPVV 65 (186)
T ss_pred CeEEEEcCCccccC----C-CCCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCH--HH---Hhhc----cCCCcEE
Confidence 46899999999999 3 359999999999999999999976 5899988886431 11 1111 1123444
Q ss_pred Ec--CCCCChHHHHHHHHhcCCCCcEEEEcCC--ccCCCCchHHHHHHHhcCceE
Q 013012 83 TV--PEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVV 133 (451)
Q Consensus 83 ~~--~~~~gt~~~l~~~~~~l~~~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~~ 133 (451)
.. +...|+.++++.+++.+..+.++++.|| ++....++.+++...+.++.+
T Consensus 66 ~~~~~~~~g~~~si~~al~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 120 (186)
T TIGR02665 66 PDALADFPGPLAGILAGLRWAGTDWVLTVPCDTPFLPEDLVARLAAALEASDADI 120 (186)
T ss_pred ecCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCcCCHHHHHHHHHHhhccCCcE
Confidence 33 3348999999999888866779999999 566777888887765444443
No 123
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.39 E-value=6.8e-12 Score=116.16 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=53.8
Q ss_pred cccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEe-------------ceEECCCCEECCCcEEec---------
Q 013012 340 NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-------------RSVIGRHCRIGSNVKVVN--------- 397 (451)
Q Consensus 340 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~-------------~svig~~~~ig~~~~i~~--------- 397 (451)
..+.+++.|+.++.|++.+.|.+++.||++|.|++++.|. ..+||++|.|+++++|..
T Consensus 24 ~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~~gt~~g~~t~ 103 (255)
T PRK12461 24 AVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIHRGTKGGGVTR 103 (255)
T ss_pred CEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEecCcccCCcEE
Confidence 3333444444444444444444445555555555555553 245666666666665531
Q ss_pred ----eEECCCCEECCCcEEe-------------CeEECCCCEECCCcEEc-ceEECCCCEECCCCccCC
Q 013012 398 ----SVVMNHVTIGDGCSIQ-------------GSVICSNAQLQERVALK-DCQVLSLSTSVFLSLSSN 448 (451)
Q Consensus 398 ----s~i~~~~~Ig~~~~i~-------------~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~~~~~ 448 (451)
|.|+.+++|+++|.|+ ++.||+++.|+.++.|. ++.||+++.|++++....
T Consensus 104 IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~~ 172 (255)
T PRK12461 104 IGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSRISK 172 (255)
T ss_pred EcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEECCCceEec
Confidence 2222222222222221 34555555555555555 366677777776665433
No 124
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.38 E-value=8.2e-12 Score=121.61 Aligned_cols=77 Identities=14% Similarity=0.221 Sum_probs=42.4
Q ss_pred CCCEECCCCEEec-eEECCCCEECCCcEEe--------------------ceEECCCCEECCCcEEe-----CeEECCCC
Q 013012 368 EGSQMGDKCSVKR-SVIGRHCRIGSNVKVV--------------------NSVVMNHVTIGDGCSIQ-----GSVICSNA 421 (451)
Q Consensus 368 ~~~~i~~~~~i~~-svig~~~~ig~~~~i~--------------------~s~i~~~~~Ig~~~~i~-----~~ii~~~~ 421 (451)
++|.|+++|.|.+ +.||++|.|+++|.|+ +++|++++.||+++.|. +++||+++
T Consensus 153 ~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~ 232 (343)
T PRK00892 153 ADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGV 232 (343)
T ss_pred CCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEecCccccceeCCCC
Confidence 3333333333332 3456666666666663 35666667777666663 45566666
Q ss_pred EECCCcEEc-ceEECCCCEECCCC
Q 013012 422 QLQERVALK-DCQVLSLSTSVFLS 444 (451)
Q Consensus 422 ~i~~~~~i~-~~~ig~~~~i~~~~ 444 (451)
.|+..+.|. +|.||+++.+.+++
T Consensus 233 ~i~~~v~I~~~~~IG~~~~i~~~~ 256 (343)
T PRK00892 233 KIDNLVQIAHNVVIGRHTAIAAQV 256 (343)
T ss_pred EEeCCeEEccCCEECCCcEEeeee
Confidence 666555554 36666666555544
No 125
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.38 E-value=5.9e-12 Score=111.34 Aligned_cols=98 Identities=17% Similarity=0.322 Sum_probs=77.6
Q ss_pred CCceeCCCCeeCCCcEECC---CCEECCCCEECCCCEE-----eceEECCCCEECCCcEEeceEECCCCEECCCcEEe-C
Q 013012 344 QNNIIHPSAELGSKTTVGP---HCMLGEGSQMGDKCSV-----KRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-G 414 (451)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~---~~~i~~~~~i~~~~~i-----~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~-~ 414 (451)
++++|++++.|+++++|.+ .++||++|.|+++|.| .+|+||++|.|++++.|.+|+|++++.||.++.|. +
T Consensus 25 G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ga~I~~g 104 (192)
T TIGR02287 25 GDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMNAVVMDG 104 (192)
T ss_pred eeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCCcccCCC
Confidence 3455566666666666542 4567888888889888 46999999999999999999999999999999984 6
Q ss_pred eEECCCCEECCCcEEc-ceEECCCCEEC
Q 013012 415 SVICSNAQLQERVALK-DCQVLSLSTSV 441 (451)
Q Consensus 415 ~ii~~~~~i~~~~~i~-~~~ig~~~~i~ 441 (451)
++||+++.|++++.|. +..|.+++.+.
T Consensus 105 ~~IG~~s~Vgags~V~~~~~ip~~~l~~ 132 (192)
T TIGR02287 105 AVIGENSIVAASAFVKAGAEMPAQYLVV 132 (192)
T ss_pred eEECCCCEEcCCCEECCCCEECCCeEEE
Confidence 8888888888888776 46677776654
No 126
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.38 E-value=3.7e-12 Score=101.59 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=70.8
Q ss_pred CEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEEcceEECCCCEECCCCccCCC
Q 013012 370 SQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVLSLSTSVFLSLSSNE 449 (451)
Q Consensus 370 ~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~ 449 (451)
+.|++++.|++|+||++|.|+ ++.|.+|++|+++.|++++.|.+|+|++++.|++++.+.+|+||+++.|++++...++
T Consensus 2 ~~i~~~~~i~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 2 PYIGRRGEVKNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred ceecCCCEEEeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECCC
Confidence 567788888899999999998 9999999999999999999999999999999999999999999999999988765543
No 127
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.38 E-value=7.2e-12 Score=116.02 Aligned_cols=100 Identities=19% Similarity=0.290 Sum_probs=55.8
Q ss_pred CCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEe-ceEECCCCEECCCcEEe-------------ceEECCCCEECCC
Q 013012 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-------------NSVVMNHVTIGDG 409 (451)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~-~svig~~~~ig~~~~i~-------------~s~i~~~~~Ig~~ 409 (451)
+++.++.++.|++.+.|++++.||++|.|+++|.|. ++.||++|.|++++.|+ ..+|+++++|+++
T Consensus 10 ~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~ 89 (255)
T PRK12461 10 PSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREG 89 (255)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCc
Confidence 344444445555555555555556666666666665 46777777777777775 3567777777777
Q ss_pred cEEe-------CeEECCCCEECCCcEEc-ceEECCCCEECCC
Q 013012 410 CSIQ-------GSVICSNAQLQERVALK-DCQVLSLSTSVFL 443 (451)
Q Consensus 410 ~~i~-------~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~ 443 (451)
+.|. .+.||+++.+.+++.|. +|.||++++++.+
T Consensus 90 vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~ 131 (255)
T PRK12461 90 VTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNG 131 (255)
T ss_pred cEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCC
Confidence 7764 23444444444444443 2444444444433
No 128
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.38 E-value=1.4e-11 Score=105.71 Aligned_cols=97 Identities=15% Similarity=0.175 Sum_probs=79.4
Q ss_pred CCCCeeCCCcEECCCCEECCCCEECCCCEEec----eEECCCCEECCCcEEec-----eEECCCCEECCCcEEeCeEECC
Q 013012 349 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR----SVIGRHCRIGSNVKVVN-----SVVMNHVTIGDGCSIQGSVICS 419 (451)
Q Consensus 349 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~----svig~~~~ig~~~~i~~-----s~i~~~~~Ig~~~~i~~~ii~~ 419 (451)
.+++.+.+++.|.+++.||++|.|+++|.|.. .+||++|.|+++|.|.. ++|++++.|++++.+.+++||+
T Consensus 4 ~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~ 83 (154)
T cd04650 4 SPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGN 83 (154)
T ss_pred CCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECC
Confidence 44455555555556666777777777777664 59999999999999985 8999999999999999999999
Q ss_pred CCEECCCcEEc-ceEECCCCEECCCCc
Q 013012 420 NAQLQERVALK-DCQVLSLSTSVFLSL 445 (451)
Q Consensus 420 ~~~i~~~~~i~-~~~ig~~~~i~~~~~ 445 (451)
++.|+.++.+. +++||+++++++++.
T Consensus 84 ~~~Ig~~~~i~~~~~Ig~~~~vg~~~~ 110 (154)
T cd04650 84 YVIVGMGAILLNGAKIGDHVIIGAGAV 110 (154)
T ss_pred CCEEcCCCEEeCCCEECCCCEECCCCE
Confidence 99999999986 588999988888764
No 129
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.8e-12 Score=120.95 Aligned_cols=97 Identities=15% Similarity=0.365 Sum_probs=87.3
Q ss_pred cccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECC
Q 013012 340 NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICS 419 (451)
Q Consensus 340 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~ 419 (451)
...+.++.+++++.|++++.| ..++||.+|.||+++.|.+|+|.+++.||+||.|.+|+|+++++||++|.+.+|+||.
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~i-k~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig~ 407 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNI-KRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIGP 407 (433)
T ss_pred eccchhhccCCCceeccccee-eeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeeeeEecC
Confidence 345678889999999998888 7899999999999999999999999999999999999999999999999999999999
Q ss_pred CCEECCCcEEcceEECCC
Q 013012 420 NAQLQERVALKDCQVLSL 437 (451)
Q Consensus 420 ~~~i~~~~~i~~~~ig~~ 437 (451)
+=++.++.+.++.++-++
T Consensus 408 ~yvVeak~~~~~ev~~~~ 425 (433)
T KOG1462|consen 408 GYVVEAKGKHGGEVLVSN 425 (433)
T ss_pred CcEEcccccccccEeecc
Confidence 999998887776554433
No 130
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.36 E-value=3.5e-12 Score=129.72 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=59.5
Q ss_pred CCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEE----------
Q 013012 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSI---------- 412 (451)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~-~s~i~~~~~Ig~~~~i---------- 412 (451)
+++.|++++.|++++.|. ++.|+++|.|+++|.|.+++||++|.||++++|. +++|+++|+||+++.+
T Consensus 278 ~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~~~ 356 (451)
T TIGR01173 278 GKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSK 356 (451)
T ss_pred CceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCCcE
Confidence 344455555555555552 4566667777767777677777777777777776 4666666666655544
Q ss_pred -------eCeEECCCCEECCCcEEc--------ceEECCCCEECCCC
Q 013012 413 -------QGSVICSNAQLQERVALK--------DCQVLSLSTSVFLS 444 (451)
Q Consensus 413 -------~~~ii~~~~~i~~~~~i~--------~~~ig~~~~i~~~~ 444 (451)
+++.||+++.|+.++++. +++||+++.|+.++
T Consensus 357 i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~ 403 (451)
T TIGR01173 357 AGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNT 403 (451)
T ss_pred ecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCC
Confidence 346666777777665442 14455555555443
No 131
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.36 E-value=9.1e-12 Score=113.66 Aligned_cols=100 Identities=18% Similarity=0.244 Sum_probs=63.1
Q ss_pred CceeCCCCeeCCCcEECCCCEECCCCEECCCCEEec-eEECCCCEECCCcEEe---------ceEECCCCEECCCcEE-e
Q 013012 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV---------NSVVMNHVTIGDGCSI-Q 413 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~-svig~~~~ig~~~~i~---------~s~i~~~~~Ig~~~~i-~ 413 (451)
.++|++++.|.+. .+..++.||++|.|..++.|.+ ++||++|.|+.++.|+ +++|+++|.||.+|.| +
T Consensus 112 ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~ 190 (269)
T TIGR00965 112 GAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVE 190 (269)
T ss_pred CcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcC
Confidence 3444444444332 3334455666666666666653 6667777776666663 4688888888888877 4
Q ss_pred CeEECCCCEECCCcEEcc-e-------------EECCCCEECCCCc
Q 013012 414 GSVICSNAQLQERVALKD-C-------------QVLSLSTSVFLSL 445 (451)
Q Consensus 414 ~~ii~~~~~i~~~~~i~~-~-------------~ig~~~~i~~~~~ 445 (451)
+++||++++|+.+++|+. + .|.+++++.||+.
T Consensus 191 GV~IG~gavIGaGavI~~~~~I~~~~~g~v~~~~vp~~svv~~g~~ 236 (269)
T TIGR00965 191 GVIVEEGSVISMGVFIGQSTKIYDRETGEIHYGRVPAGSVVVSGNL 236 (269)
T ss_pred CCEECCCCEEeCCCEECCCCEEecccCCceeeeecCCCcEEecCCe
Confidence 677777777777777642 2 5678888877753
No 132
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.35 E-value=8e-12 Score=102.58 Aligned_cols=96 Identities=13% Similarity=0.181 Sum_probs=64.5
Q ss_pred CCCCeeCCCcEECCCCEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCc
Q 013012 349 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV 427 (451)
Q Consensus 349 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~-~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~ 427 (451)
++++.|+++++|++++.||++|.|++++.|. +++||++|.|++++.+.++.+ .+..+..++.+++++||+++.|++++
T Consensus 2 g~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~-~~~~~~~~~~~~~~~Ig~~~~Ig~~~ 80 (119)
T cd03358 2 GDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLY-PRSKIYRKWELKGTTVKRGASIGANA 80 (119)
T ss_pred CCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCC-CccccccccccCCcEECCCcEECcCC
Confidence 4566666777777777777777887777775 588888888888888876433 33334445566666666666666666
Q ss_pred EEc-ceEECCCCEECCCCc
Q 013012 428 ALK-DCQVLSLSTSVFLSL 445 (451)
Q Consensus 428 ~i~-~~~ig~~~~i~~~~~ 445 (451)
.+. ++.|++++.|++++.
T Consensus 81 ~v~~~~~ig~~~~i~~~~~ 99 (119)
T cd03358 81 TILPGVTIGEYALVGAGAV 99 (119)
T ss_pred EEeCCcEECCCCEEccCCE
Confidence 665 366666666665553
No 133
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.35 E-value=7.8e-12 Score=126.89 Aligned_cols=85 Identities=20% Similarity=0.267 Sum_probs=54.5
Q ss_pred CCEECCCCEECCCCEEe-ceEECCCCEECCCcEEec-----------------eEECCCCEECCCcEE--------eCeE
Q 013012 363 HCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVN-----------------SVVMNHVTIGDGCSI--------QGSV 416 (451)
Q Consensus 363 ~~~i~~~~~i~~~~~i~-~svig~~~~ig~~~~i~~-----------------s~i~~~~~Ig~~~~i--------~~~i 416 (451)
+++||++|+|++++.|. +++||++|.||+++.+.+ ++|+++|.||.++.+ .+++
T Consensus 303 ~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~ 382 (446)
T PRK14353 303 GAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTE 382 (446)
T ss_pred ccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcE
Confidence 45566666666666665 466666666666665544 455555555555544 1467
Q ss_pred ECCCCEECCCcEEc-ceEECCCCEECCCCccC
Q 013012 417 ICSNAQLQERVALK-DCQVLSLSTSVFLSLSS 447 (451)
Q Consensus 417 i~~~~~i~~~~~i~-~~~ig~~~~i~~~~~~~ 447 (451)
||++++||.++.|. ++.||++++|++++...
T Consensus 383 Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~ 414 (446)
T PRK14353 383 IGAGAFIGSNSALVAPVTIGDGAYIASGSVIT 414 (446)
T ss_pred ECCCcEECCCCEEeCCCEECCCCEECCCCEEC
Confidence 77777777777776 47888888888877443
No 134
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.35 E-value=4.9e-12 Score=114.07 Aligned_cols=119 Identities=25% Similarity=0.366 Sum_probs=83.8
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHC-CCcEEEEEecCchhhHHHHHhhhhhccCceeeEE
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~-gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i 81 (451)
+.|||+|||.|+|| +.+.||++++++|+|+|.|+++.+.+. .+++|+|++... +.+.+++++.+ ..+.+
T Consensus 1 V~aIilAaG~G~R~----g~~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~-~~~~~~~~~~~-----~~v~i 70 (221)
T PF01128_consen 1 VAAIILAAGSGSRM----GSGIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPE-DIDYVEELLSK-----KKVKI 70 (221)
T ss_dssp EEEEEEESS-STCC----TSSS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGG-GHHHHHHHHHH-----TTEEE
T ss_pred CEEEEeCCccchhc----CcCCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecch-hHHHHHHhhcC-----CCEEE
Confidence 36899999999999 778999999999999999999999885 589999999743 34456665544 12444
Q ss_pred EEcCCCCChHHHHHHHHhcCCCCcEEEEcCC----ccCCCCchHHHHHHHh-cCceE
Q 013012 82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGD----LVSDVPPGAVTAAHRR-HDAVV 133 (451)
Q Consensus 82 ~~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D----~i~~~~~~~~l~~~~~-~~~~~ 133 (451)
+ .......++++.+++.+....-+|+-.| ++....+.++++..++ .++.+
T Consensus 71 v--~GG~tR~~SV~ngL~~l~~~~d~VlIHDaaRPfv~~~~i~~~i~~~~~~~~aai 125 (221)
T PF01128_consen 71 V--EGGATRQESVYNGLKALAEDCDIVLIHDAARPFVSPELIDRVIEAAREGHGAAI 125 (221)
T ss_dssp E--E--SSHHHHHHHHHHCHHCTSSEEEEEETTSTT--HHHHHHHHHHHHHTCSEEE
T ss_pred e--cCChhHHHHHHHHHHHHHcCCCEEEEEccccCCCCHHHHHHHHHHHHhhcCcEE
Confidence 3 4567778999999888754423344466 5555567888888776 55444
No 135
>PLN02472 uncharacterized protein
Probab=99.35 E-value=1.2e-11 Score=113.20 Aligned_cols=97 Identities=14% Similarity=0.231 Sum_probs=70.4
Q ss_pred CceeCCCCeeCCCcEECCC---CEECCCCEECCCCEEe-----------ceEECCCCEECCCcEEeceEECCCCEECCCc
Q 013012 345 NNIIHPSAELGSKTTVGPH---CMLGEGSQMGDKCSVK-----------RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGC 410 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~---~~i~~~~~i~~~~~i~-----------~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~ 410 (451)
++.|++++.|..++++.++ ..||++|.|+++|.|. +++||++|.||++|.|.+|+|++++.||.+|
T Consensus 77 ~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~v~IG~~s 156 (246)
T PLN02472 77 QVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPECIIGQHS 156 (246)
T ss_pred CEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCCCEECCCC
Confidence 4445555555555554332 4567777777777773 5899999999999999999999999999998
Q ss_pred EE-eCeEECCCCEECCCcEEc-ceEECCCCEEC
Q 013012 411 SI-QGSVICSNAQLQERVALK-DCQVLSLSTSV 441 (451)
Q Consensus 411 ~i-~~~ii~~~~~i~~~~~i~-~~~ig~~~~i~ 441 (451)
.| .+++|++++.|++++.+. +..|.++.+..
T Consensus 157 vI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~ 189 (246)
T PLN02472 157 ILMEGSLVETHSILEAGSVLPPGRRIPTGELWA 189 (246)
T ss_pred EECCCCEECCCCEECCCCEECCCCEeCCCCEEE
Confidence 87 467777777777766665 35666665554
No 136
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.34 E-value=4.9e-12 Score=128.74 Aligned_cols=83 Identities=12% Similarity=0.201 Sum_probs=45.0
Q ss_pred CceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEE------------------eceEECCCCEE
Q 013012 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKV------------------VNSVVMNHVTI 406 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i------------------~~s~i~~~~~I 406 (451)
++.|++++.|++++.| .+++|+++|.|+++|.|.+++||++|.||++++| .+++|++++.+
T Consensus 287 ~~~ig~~~~I~~~~~i-~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i 365 (456)
T PRK14356 287 ASRIARGAVIHSHCWL-RDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKA 365 (456)
T ss_pred ceEECCCCEECCCeEE-EeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCcEe
Confidence 4445555555555444 2344555555555555544555555555555544 44455555555
Q ss_pred CCCcEEeCeEECCCCEECCCcE
Q 013012 407 GDGCSIQGSVICSNAQLQERVA 428 (451)
Q Consensus 407 g~~~~i~~~ii~~~~~i~~~~~ 428 (451)
++.+.+++++||+++.|++++.
T Consensus 366 ~~~~~ig~~~ig~~~~Ig~~~~ 387 (456)
T PRK14356 366 NHLTYLGDAEIGAGANIGAGTI 387 (456)
T ss_pred cccccccCeEECCCCEECCCce
Confidence 5555555677777777777754
No 137
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.33 E-value=1.7e-11 Score=92.83 Aligned_cols=75 Identities=21% Similarity=0.371 Sum_probs=63.5
Q ss_pred CCCEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEEcc-eEECCCCEE
Q 013012 362 PHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD-CQVLSLSTS 440 (451)
Q Consensus 362 ~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~-~~ig~~~~i 440 (451)
+++.|++++.|++ +++||++|.||++++|.+++++++++|++++.|.++++++++.|++++.+.+ ++||+++.+
T Consensus 4 ~~~~I~~~~~i~~-----~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i 78 (80)
T cd05824 4 PSAKIGKTAKIGP-----NVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTI 78 (80)
T ss_pred CCCEECCCCEECC-----CCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEE
Confidence 3444444444444 3589999999999999999999999999999999999999999999999986 889998877
Q ss_pred C
Q 013012 441 V 441 (451)
Q Consensus 441 ~ 441 (451)
+
T Consensus 79 ~ 79 (80)
T cd05824 79 K 79 (80)
T ss_pred C
Confidence 5
No 138
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.33 E-value=3.5e-11 Score=101.53 Aligned_cols=95 Identities=20% Similarity=0.345 Sum_probs=62.8
Q ss_pred CCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEe-ceEECCCCEECCCcEEe---------ceEECCCCEECCCcEE
Q 013012 343 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV---------NSVVMNHVTIGDGCSI 412 (451)
Q Consensus 343 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~-~svig~~~~ig~~~~i~---------~s~i~~~~~Ig~~~~i 412 (451)
.+++++++++.|.+.+++..++.||++|.|++++.|. +++||++|.|++++.|. .++|++++.||.++.|
T Consensus 11 ~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I 90 (139)
T cd03350 11 RDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEV 90 (139)
T ss_pred CCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEE
Confidence 3455555555555555565666666666666666664 36777777777777775 3677777777777777
Q ss_pred -eCeEECCCCEECCCcEEc-ceEECCC
Q 013012 413 -QGSVICSNAQLQERVALK-DCQVLSL 437 (451)
Q Consensus 413 -~~~ii~~~~~i~~~~~i~-~~~ig~~ 437 (451)
.++.|++++.|++++.|. +..|+++
T Consensus 91 ~~gv~Ig~~~~Ig~g~~V~~~~~I~~~ 117 (139)
T cd03350 91 VEGVIVGKGAVLAAGVVLTQSTPIYDR 117 (139)
T ss_pred CCCCEECCCCEEcCCCEEcCCeEeccc
Confidence 467777777777777766 3556555
No 139
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.32 E-value=3e-11 Score=103.72 Aligned_cols=97 Identities=24% Similarity=0.264 Sum_probs=75.4
Q ss_pred CCCCeeCCCcEECCCCEECCCCEECCCCEEe----ceEECCCCEECCCcEEec-----eEECCCCEECCCcEEeCeEECC
Q 013012 349 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVVN-----SVVMNHVTIGDGCSIQGSVICS 419 (451)
Q Consensus 349 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~----~svig~~~~ig~~~~i~~-----s~i~~~~~Ig~~~~i~~~ii~~ 419 (451)
++++.+++++.|.+++.||++|.|++++.|. +++||++|.|+++|+|.. ++|++++.|+.+|.+.+++|++
T Consensus 3 ~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~ 82 (153)
T cd04645 3 DPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGD 82 (153)
T ss_pred cCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECC
Confidence 3444444444554555556666666666554 469999999999999986 5999999999999999999999
Q ss_pred CCEECCCcEEc-ceEECCCCEECCCCc
Q 013012 420 NAQLQERVALK-DCQVLSLSTSVFLSL 445 (451)
Q Consensus 420 ~~~i~~~~~i~-~~~ig~~~~i~~~~~ 445 (451)
++.|++++.+. +++|++++.|++++.
T Consensus 83 ~~~Ig~~~~v~~~~~ig~~~~ig~~~~ 109 (153)
T cd04645 83 NCLIGMGAIILDGAVIGKGSIVAAGSL 109 (153)
T ss_pred CCEECCCCEEcCCCEECCCCEECCCCE
Confidence 99999999987 588888888877663
No 140
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.32 E-value=2.7e-11 Score=95.72 Aligned_cols=86 Identities=19% Similarity=0.218 Sum_probs=68.3
Q ss_pred CCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEec-eEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCE
Q 013012 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQ 422 (451)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~-svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~ 422 (451)
+..++++++.+++++.+.++++||++|.|++++.|.. ++||++|.||. .|.+|+|++++.|++++.|++++||+++.
T Consensus 10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCE
Confidence 3566777788888888877888888888888888774 88888888865 57788888888888888888888888888
Q ss_pred ECCCcEEcc
Q 013012 423 LQERVALKD 431 (451)
Q Consensus 423 i~~~~~i~~ 431 (451)
|++++...+
T Consensus 88 ig~~~~~~~ 96 (101)
T cd05635 88 LGAGTNNSD 96 (101)
T ss_pred ECCCceecc
Confidence 888776554
No 141
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.32 E-value=2.8e-11 Score=107.46 Aligned_cols=97 Identities=16% Similarity=0.292 Sum_probs=72.2
Q ss_pred CceeCCCCeeCCCcEECCC---CEECCCCEECCCCEEe-----ceEECCCCEECCCcEEeceEECCCCEECCCcEE-eCe
Q 013012 345 NNIIHPSAELGSKTTVGPH---CMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI-QGS 415 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~---~~i~~~~~i~~~~~i~-----~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i-~~~ 415 (451)
++.|++++.|+++++|.++ ++|+++|.|+++|.|. +++||++|.||+++.+.+|+|++++.||.++.| .++
T Consensus 28 ~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~ga~V~~g~ 107 (196)
T PRK13627 28 DVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGA 107 (196)
T ss_pred ceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCEECcCCccCCCc
Confidence 3445555555555544322 3566677777777774 478999999999999999999999999999988 468
Q ss_pred EECCCCEECCCcEEcc-eEECCCCEEC
Q 013012 416 VICSNAQLQERVALKD-CQVLSLSTSV 441 (451)
Q Consensus 416 ii~~~~~i~~~~~i~~-~~ig~~~~i~ 441 (451)
.||+++.|++++.|.. ..+.+++++.
T Consensus 108 ~IG~~s~Vgags~V~~~~~ip~~~~~~ 134 (196)
T PRK13627 108 VIGEESIVAAMSFVKAGFQGEKRQLLM 134 (196)
T ss_pred EECCCCEEcCCCEEeCCcCcCCCcEEE
Confidence 8999999999888874 5566665543
No 142
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.31 E-value=1.9e-11 Score=92.49 Aligned_cols=76 Identities=25% Similarity=0.483 Sum_probs=65.8
Q ss_pred eCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-CeEECCCCEEC
Q 013012 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQ 424 (451)
Q Consensus 348 i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~-~~ii~~~~~i~ 424 (451)
+++++.|++++.|. ++.|+++|.|++++.|.+++|++++.|+++++|.+++|++++.|++++.|. +++|++++.|+
T Consensus 2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig 78 (79)
T cd05787 2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIG 78 (79)
T ss_pred ccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeC
Confidence 56778888888885 689999999999999999999999999999999999999999999998886 56666666554
No 143
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.31 E-value=9.2e-12 Score=126.61 Aligned_cols=100 Identities=12% Similarity=0.179 Sum_probs=55.3
Q ss_pred CCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEE------------------eceEECCCCE
Q 013012 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKV------------------VNSVVMNHVT 405 (451)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i------------------~~s~i~~~~~ 405 (451)
+++.+++++.|++++.| .++.|+++|.|+++|.|.+++||++|.||+++.| .+++|++++.
T Consensus 282 ~~v~ig~~~~I~~~~~i-~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~ 360 (456)
T PRK09451 282 GNVTLGNRVKIGAGCVL-KNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSK 360 (456)
T ss_pred cCcEECCCCEECCCceE-ecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCCCc
Confidence 34445555555555544 2455555555555555555555555555555554 4445555555
Q ss_pred ECCCcEEeCeEECCCCEECCCcEEc--------ceEECCCCEECCCC
Q 013012 406 IGDGCSIQGSVICSNAQLQERVALK--------DCQVLSLSTSVFLS 444 (451)
Q Consensus 406 Ig~~~~i~~~ii~~~~~i~~~~~i~--------~~~ig~~~~i~~~~ 444 (451)
++..+.+++|.||+++.||+++++. +++||+++.|+.++
T Consensus 361 ~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~ 407 (456)
T PRK09451 361 AGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDT 407 (456)
T ss_pred cCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCC
Confidence 5555555677888888888877542 24455555555444
No 144
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.30 E-value=6.2e-11 Score=107.17 Aligned_cols=33 Identities=12% Similarity=-0.069 Sum_probs=20.0
Q ss_pred CeEECCCCEECCCcEEc-ceEECCCCEECCCCcc
Q 013012 414 GSVICSNAQLQERVALK-DCQVLSLSTSVFLSLS 446 (451)
Q Consensus 414 ~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~~~ 446 (451)
++.|++++.|+.++.+. ++.||+++.|++++..
T Consensus 150 ~~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~s~v 183 (205)
T cd03352 150 STTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGV 183 (205)
T ss_pred ccEECCCeEEcCCCEEeCCcEECCCCEEcCCCEE
Confidence 45566666666666655 4666666666666643
No 145
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.30 E-value=2.2e-11 Score=109.25 Aligned_cols=124 Identities=21% Similarity=0.249 Sum_probs=87.5
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCC-CcEEEEEecCchhhHHHHHhhhhhccCceee
Q 013012 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (451)
Q Consensus 1 m~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~g-i~~iivv~~~~~~~~~i~~~~~~~~~~~~~~ 79 (451)
|++.+||||||.|+|| +...||++++++|+||++|+++.+.... +++|+|+++..+ ..++..+.. +... .
T Consensus 3 ~~~~~vilAaG~G~R~----~~~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~-~~~~~~~~~--~~~~--~ 73 (230)
T COG1211 3 MMVSAVILAAGFGSRM----GNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPED-DPYFEKLPK--LSAD--K 73 (230)
T ss_pred ceEEEEEEcCcccccc----CCCCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhh-hHHHHHhhh--hccC--C
Confidence 5688999999999999 7789999999999999999999998864 799999997432 334544442 1111 2
Q ss_pred EEEEcCCCCChHHHHHHHHhcCCC-CcEEEEcCC----ccCCCCchHHHHHHHhcCceE
Q 013012 80 EVATVPEDVGTAGALRAIAHHLTA-KDVLVVSGD----LVSDVPPGAVTAAHRRHDAVV 133 (451)
Q Consensus 80 ~i~~~~~~~gt~~~l~~~~~~l~~-~~~lvl~~D----~i~~~~~~~~l~~~~~~~~~~ 133 (451)
.+..........++++.+++.+.. ++-+|+-.| ++....+.++++...+.++.+
T Consensus 74 ~v~~v~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~~aai 132 (230)
T COG1211 74 RVEVVKGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADKYGAAI 132 (230)
T ss_pred eEEEecCCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhccCCcEE
Confidence 333345677888999999998862 344455666 444556666664444344433
No 146
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.29 E-value=1.3e-11 Score=125.90 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=62.6
Q ss_pred cccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCCEECCC---------
Q 013012 340 NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDG--------- 409 (451)
Q Consensus 340 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~-~s~i~~~~~Ig~~--------- 409 (451)
..+.+++.|++++.|++++.| .+++|+++|.|++++.|.+++||++|.||+++.+. +++|++++.|+++
T Consensus 283 ~~I~~~v~Ig~~~~I~~~~~i-~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~ 361 (481)
T PRK14358 283 VLLRGQTRVADGVTIGAYSVV-TDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLD 361 (481)
T ss_pred cEEeCCcEECCCCEECCCCEE-eeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceec
Confidence 333344445555555555554 34555666666666666556666666666665554 4555555555554
Q ss_pred --------cEEeCeEECCCCEECCCcEEc--------ceEECCCCEECCCC
Q 013012 410 --------CSIQGSVICSNAQLQERVALK--------DCQVLSLSTSVFLS 444 (451)
Q Consensus 410 --------~~i~~~ii~~~~~i~~~~~i~--------~~~ig~~~~i~~~~ 444 (451)
+.++++.||+++.||+++++. +++||+++.+++++
T Consensus 362 ~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~ 412 (481)
T PRK14358 362 AGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNT 412 (481)
T ss_pred CCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCC
Confidence 445567888888888888774 25777777777766
No 147
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.28 E-value=3.2e-11 Score=111.28 Aligned_cols=94 Identities=17% Similarity=0.289 Sum_probs=64.3
Q ss_pred ccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEec-eEECCCCEECCCcEEe---------ceEECCCCEECCCc
Q 013012 341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV---------NSVVMNHVTIGDGC 410 (451)
Q Consensus 341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~-svig~~~~ig~~~~i~---------~s~i~~~~~Ig~~~ 410 (451)
+++.+++|++++.|.+ +.++.++.|+++|.|+.++.|.+ ++||++|.|++++.|. +++|+++|.||.+|
T Consensus 111 ~V~~ga~Ig~gavI~p-~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s 189 (272)
T PRK11830 111 VVRRGAYIAPNVVLMP-SYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARS 189 (272)
T ss_pred EECCCCEECCCcEEEE-EEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCC
Confidence 3344445555554442 34455666777777777777765 5778888888777765 37888888998888
Q ss_pred EE-eCeEECCCCEECCCcEEc-ceEEC
Q 013012 411 SI-QGSVICSNAQLQERVALK-DCQVL 435 (451)
Q Consensus 411 ~i-~~~ii~~~~~i~~~~~i~-~~~ig 435 (451)
.| .+++||++++|++++.|. ++.|+
T Consensus 190 ~I~~Gv~IGdgavIgag~vV~~gt~I~ 216 (272)
T PRK11830 190 EVVEGVIVEEGSVLGMGVFLGQSTKIY 216 (272)
T ss_pred EEcCCCEECCCCEEcCCCEEcCCeEEC
Confidence 88 578888888888888776 35555
No 148
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.28 E-value=6.5e-11 Score=102.44 Aligned_cols=96 Identities=18% Similarity=0.274 Sum_probs=69.7
Q ss_pred eeCCCCeeCCCcEECCC---CEECCCCEECCCCEEe-------------ceEECCCCEECCCcEEeceEECCCCEECCCc
Q 013012 347 IIHPSAELGSKTTVGPH---CMLGEGSQMGDKCSVK-------------RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGC 410 (451)
Q Consensus 347 ~i~~~~~i~~~~~i~~~---~~i~~~~~i~~~~~i~-------------~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~ 410 (451)
.+++.+.|++++.|.++ +.||++|.|+++|.|. +++||++|.|++++.+.+++|++++.||+++
T Consensus 23 ~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~ 102 (161)
T cd03359 23 VLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNC 102 (161)
T ss_pred EECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECCCC
Confidence 34444444444444322 3555555555555554 3589999999999999999999999999999
Q ss_pred EEe-CeEECCCCEECCCcEEc-ceEECCCCEECC
Q 013012 411 SIQ-GSVICSNAQLQERVALK-DCQVLSLSTSVF 442 (451)
Q Consensus 411 ~i~-~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~ 442 (451)
.|+ +++|++++.|++++++. ++.|++++++..
T Consensus 103 ~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g 136 (161)
T cd03359 103 VIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSG 136 (161)
T ss_pred EEcCCCEECCCcEECCCCEECCCCEeCCCCEEec
Confidence 984 78888888888888887 577888888764
No 149
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.28 E-value=7.4e-11 Score=99.52 Aligned_cols=30 Identities=7% Similarity=-0.110 Sum_probs=14.4
Q ss_pred eEECCCCEECCCcEEc-ceEECCCCEECCCC
Q 013012 415 SVICSNAQLQERVALK-DCQVLSLSTSVFLS 444 (451)
Q Consensus 415 ~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~ 444 (451)
++|++++.|++++.|. ++.||++++|++++
T Consensus 76 v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~ 106 (139)
T cd03350 76 VIIEDDVFIGANCEVVEGVIVGKGAVLAAGV 106 (139)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEEcCCC
Confidence 4455555555555543 34444444444444
No 150
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.28 E-value=3.2e-11 Score=110.03 Aligned_cols=101 Identities=18% Similarity=0.283 Sum_probs=84.3
Q ss_pred cccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEe-ceEECCCCEECCCcEEec---------eEECCCCEECCC
Q 013012 340 NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVN---------SVVMNHVTIGDG 409 (451)
Q Consensus 340 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~-~svig~~~~ig~~~~i~~---------s~i~~~~~Ig~~ 409 (451)
..+.+++++++++.|++++.|++++.||++|.|++++.|. +++||++|.||.++.|.+ ++|++++.||.+
T Consensus 93 a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~g 172 (231)
T TIGR03532 93 AIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGAN 172 (231)
T ss_pred CEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCC
Confidence 3344567788888888888888888899999999999886 799999999999999974 899999999999
Q ss_pred cEE-eCeEECCCCEECCCcEEcceEECCCCEEC
Q 013012 410 CSI-QGSVICSNAQLQERVALKDCQVLSLSTSV 441 (451)
Q Consensus 410 ~~i-~~~ii~~~~~i~~~~~i~~~~ig~~~~i~ 441 (451)
+.| .++.||+++.|+++++|.+. |.+++++.
T Consensus 173 svI~~g~~Ig~~~~IgagsvV~~d-i~~~~vv~ 204 (231)
T TIGR03532 173 AVILEGVRVGKGAVVAAGAIVTED-VPPNTVVA 204 (231)
T ss_pred CEEcCCCEECCCCEECCCCEEccc-cCCCcEEE
Confidence 998 58999999999999988753 56666655
No 151
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.28 E-value=2.7e-11 Score=122.36 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=27.5
Q ss_pred CCEECCCCEEe-----ceEECCCCEECCCcEEeceEECCCC----------EECCCcEEeCeEECCCCEECCCcE
Q 013012 369 GSQMGDKCSVK-----RSVIGRHCRIGSNVKVVNSVVMNHV----------TIGDGCSIQGSVICSNAQLQERVA 428 (451)
Q Consensus 369 ~~~i~~~~~i~-----~svig~~~~ig~~~~i~~s~i~~~~----------~Ig~~~~i~~~ii~~~~~i~~~~~ 428 (451)
+|.|+++|.|+ +|+||++|.|+++++|.+|+|+++| +||+++.|++|+||+++.||++++
T Consensus 282 ~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~ 356 (430)
T PRK14359 282 NSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTI 356 (430)
T ss_pred eeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCce
Confidence 34445555442 3344444444444444444444443 333334444555555555555443
No 152
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.27 E-value=1.2e-11 Score=125.77 Aligned_cols=99 Identities=15% Similarity=0.228 Sum_probs=47.1
Q ss_pred CceeCCCCeeCCCcEECCCCEECCCCEECCCCEEece----------------EECCCCEECCCcEEe-ceEECCCCEEC
Q 013012 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRS----------------VIGRHCRIGSNVKVV-NSVVMNHVTIG 407 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~s----------------vig~~~~ig~~~~i~-~s~i~~~~~Ig 407 (451)
++.+++++.|++++.|++++.||++|.|++++.|+++ +||++|.||++|+|. +++|++++.||
T Consensus 262 ~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig 341 (450)
T PRK14360 262 TVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIG 341 (450)
T ss_pred CEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEEC
Confidence 4444555555555555555555555555555555443 444455555555554 45555555555
Q ss_pred CCcEEeCeEECCCCEECCCcEEcceEECCCCEECCC
Q 013012 408 DGCSIQGSVICSNAQLQERVALKDCQVLSLSTSVFL 443 (451)
Q Consensus 408 ~~~~i~~~ii~~~~~i~~~~~i~~~~ig~~~~i~~~ 443 (451)
+++.|.+++|++++.|.+++.+++++||+++.|+++
T Consensus 342 ~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~ 377 (450)
T PRK14360 342 NFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAG 377 (450)
T ss_pred CCEEEeccccCCCcEeccceecCCceecCCcEECcc
Confidence 555554444444333333333333334444444433
No 153
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.27 E-value=9.6e-11 Score=92.57 Aligned_cols=86 Identities=15% Similarity=0.140 Sum_probs=73.6
Q ss_pred CCCEECCCCEECCCCEEe-ceEECCCCEECCCcEEe-ceEECCCCEECCCcEEeCeEECCCCEECCCcEEcceEECCCCE
Q 013012 362 PHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVLSLST 439 (451)
Q Consensus 362 ~~~~i~~~~~i~~~~~i~-~svig~~~~ig~~~~i~-~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~~~ig~~~~ 439 (451)
+++++++++.|++++.+. +++||++|.|++++.|. +++|++++.||. .|.+|+|.+++.|++++.|++++||+++.
T Consensus 10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCE
Confidence 456677777777777765 47899999999999998 599999999976 68899999999999999999999999999
Q ss_pred ECCCCccCCC
Q 013012 440 SVFLSLSSNE 449 (451)
Q Consensus 440 i~~~~~~~~~ 449 (451)
|++++-.++.
T Consensus 88 ig~~~~~~~~ 97 (101)
T cd05635 88 LGAGTNNSDL 97 (101)
T ss_pred ECCCceeccc
Confidence 9999876654
No 154
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.27 E-value=4.4e-11 Score=109.19 Aligned_cols=96 Identities=18% Similarity=0.248 Sum_probs=50.9
Q ss_pred eeCCCCeeCCCcEECCCCE-----ECCCCEECCCCEEec-eEECCCCEECCCcEEe-ceEEC--------CCCEECCCcE
Q 013012 347 IIHPSAELGSKTTVGPHCM-----LGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-NSVVM--------NHVTIGDGCS 411 (451)
Q Consensus 347 ~i~~~~~i~~~~~i~~~~~-----i~~~~~i~~~~~i~~-svig~~~~ig~~~~i~-~s~i~--------~~~~Ig~~~~ 411 (451)
.+.|++.+.+++.|+++++ +..++.||++|.|.. ++||++|.||++|.|. ++.|+ .++.||++|.
T Consensus 102 rv~p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~ 181 (269)
T TIGR00965 102 RVVPGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCF 181 (269)
T ss_pred EECCCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCE
Confidence 3444444444444444443 444566677766664 6667777777766665 34443 3456666665
Q ss_pred Ee-CeEECCCCEECCCcEEc-ceEECCCCEECC
Q 013012 412 IQ-GSVICSNAQLQERVALK-DCQVLSLSTSVF 442 (451)
Q Consensus 412 i~-~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~ 442 (451)
|+ +|.|..+++|+++++|+ +++|++++.|.+
T Consensus 182 IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~ 214 (269)
T TIGR00965 182 IGARSEIVEGVIVEEGSVISMGVFIGQSTKIYD 214 (269)
T ss_pred ECCCCEEcCCCEECCCCEEeCCCEECCCCEEec
Confidence 54 44555555555544444 344444444443
No 155
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.26 E-value=6.1e-11 Score=100.52 Aligned_cols=95 Identities=17% Similarity=0.233 Sum_probs=70.2
Q ss_pred CceeCCCCeeCCCcEECC---CCEECCCCEECCCCEEe-----ceEECCCCEECCCcEEeceEECCCCEECCCcEEe-Ce
Q 013012 345 NNIIHPSAELGSKTTVGP---HCMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GS 415 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~---~~~i~~~~~i~~~~~i~-----~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~-~~ 415 (451)
++.|+.++.|.+++++.+ ...||++|-|.++|.|. +++||++|+||++|.|.+|.|++++.||=|+.|- ++
T Consensus 29 dV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~lIGmgA~vldga 108 (176)
T COG0663 29 DVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNVLIGMGATVLDGA 108 (176)
T ss_pred eEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCcEEecCceEeCCc
Confidence 344444444444444432 33577777777777775 5799999999999999999999999999999885 49
Q ss_pred EECCCCEECCCcEEcc-eEECCCCE
Q 013012 416 VICSNAQLQERVALKD-CQVLSLST 439 (451)
Q Consensus 416 ii~~~~~i~~~~~i~~-~~ig~~~~ 439 (451)
.||+++.|++++.|.. ..+.+++.
T Consensus 109 ~IG~~~iVgAgalV~~~k~~p~~~L 133 (176)
T COG0663 109 VIGDGSIVGAGALVTPGKEIPGGSL 133 (176)
T ss_pred EECCCcEEccCCcccCCcCCCCCeE
Confidence 9999999999888875 44444443
No 156
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.26 E-value=1.3e-10 Score=104.59 Aligned_cols=15 Identities=40% Similarity=0.569 Sum_probs=5.7
Q ss_pred eEECCCCEECCCcEE
Q 013012 398 SVVMNHVTIGDGCSI 412 (451)
Q Consensus 398 s~i~~~~~Ig~~~~i 412 (451)
+.|++++.||.++.+
T Consensus 154 ~~ig~~~~ig~~~~v 168 (201)
T TIGR03570 154 VVIGEGVFIGAGATI 168 (201)
T ss_pred cEECCCCEECCCCEE
Confidence 333333333333333
No 157
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.25 E-value=3.4e-11 Score=106.40 Aligned_cols=111 Identities=23% Similarity=0.371 Sum_probs=82.2
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeE
Q 013012 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (451)
Q Consensus 1 m~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (451)
|++.+||||||+|+|| .+|+|++++|+||++|+++.|.... +.++|... ..+. . |. ..+++
T Consensus 3 ~~~~~vILAGG~srRm-------~dK~l~~~~g~~lie~v~~~L~~~~-~~vvi~~~-~~~~-~---~~------~~g~~ 63 (192)
T COG0746 3 TPMTGVILAGGKSRRM-------RDKALLPLNGRPLIEHVIDRLRPQV-DVVVISAN-RNQG-R---YA------EFGLP 63 (192)
T ss_pred CCceEEEecCCccccc-------cccccceeCCeEHHHHHHHHhcccC-CEEEEeCC-Cchh-h---hh------ccCCc
Confidence 4689999999999999 4799999999999999999998774 44555443 3211 1 11 12245
Q ss_pred EEEcCCCC-ChHHHHHHHHhcCCCCcEEEEcCC--ccCCCCchHHHHHHHhcC
Q 013012 81 VATVPEDV-GTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHD 130 (451)
Q Consensus 81 i~~~~~~~-gt~~~l~~~~~~l~~~~~lvl~~D--~i~~~~~~~~l~~~~~~~ 130 (451)
++...... |+..+++.+++....+.+++++|| ++.+..+..++....+.+
T Consensus 64 vv~D~~~~~GPL~Gi~~al~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 64 VVPDELPGFGPLAGILAALRHFGTEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred eeecCCCCCCCHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 55444444 999999999998887889999999 666666777776665544
No 158
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.24 E-value=1.3e-10 Score=95.85 Aligned_cols=53 Identities=17% Similarity=0.296 Sum_probs=40.3
Q ss_pred CCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEe----c-eEECCCCEECCCcEEe
Q 013012 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----R-SVIGRHCRIGSNVKVV 396 (451)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~----~-svig~~~~ig~~~~i~ 396 (451)
+...+.+++.|++++.|.+++++..++.||++|.|. . ++||++|.||+++.|.
T Consensus 6 ~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~ 63 (147)
T cd04649 6 DADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM 63 (147)
T ss_pred CCCEECCCCEECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEE
Confidence 455667777777777777777777777777777775 3 7888888888888887
No 159
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.24 E-value=2.4e-10 Score=104.19 Aligned_cols=119 Identities=15% Similarity=0.219 Sum_probs=87.3
Q ss_pred EEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCC-CcEEEEEecCchhhHHHHHhhhhhccCceeeEEEE
Q 013012 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (451)
Q Consensus 5 avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~g-i~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~ 83 (451)
|||+|+|.|+|| . +|.+++++|+|||.|+++.+.+++ +++|+|.+.. +++.+...++ +..+..
T Consensus 2 aiIpArG~Skr~----~---~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~----~~i~~~a~~~-----g~~v~~ 65 (222)
T TIGR03584 2 AIIPARGGSKRI----P---RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDD----EEIAEVAKSY-----GASVPF 65 (222)
T ss_pred EEEccCCCCCCC----C---CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCC----HHHHHHHHHc-----CCEeEE
Confidence 799999999999 2 599999999999999999999887 6777776643 2344443322 122221
Q ss_pred ------cCCCCChHHHHHHHHhcCC----CCcEEEEcCC--ccCCCCchHHHHHHHhcCceEEEEEee
Q 013012 84 ------VPEDVGTAGALRAIAHHLT----AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS 139 (451)
Q Consensus 84 ------~~~~~gt~~~l~~~~~~l~----~~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~~t~~~~~ 139 (451)
..+..|+.++++.+++.+. .+.++++.+| ++...++..+++.+.+.+++..+.+.+
T Consensus 66 ~r~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~ 133 (222)
T TIGR03584 66 LRPKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTS 133 (222)
T ss_pred eChHHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeec
Confidence 2335788899999877652 3559999999 777789999999988766665554443
No 160
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.23 E-value=6.9e-11 Score=115.96 Aligned_cols=119 Identities=19% Similarity=0.292 Sum_probs=87.7
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEE
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i 81 (451)
++.+||||||.|+|| . +.||+|++++|+|||+|+++.+... +++++|++.... +.+..++. . +.+
T Consensus 5 ~i~~VILAgG~s~Rm----g-g~~K~ll~i~Gkpll~~~i~~l~~~-~~~iivvv~~~~--~~~~~~~~-----~--~~~ 69 (366)
T PRK14489 5 QIAGVILAGGLSRRM----N-GRDKALILLGGKPLIERVVDRLRPQ-FARIHLNINRDP--ARYQDLFP-----G--LPV 69 (366)
T ss_pred CceEEEEcCCcccCC----C-CCCCceeEECCeeHHHHHHHHHHhh-CCEEEEEcCCCH--HHHHhhcc-----C--CcE
Confidence 367999999999999 3 5799999999999999999999754 899998776432 22322211 1 222
Q ss_pred EE--cCCCCChHHHHHHHHhcCCCCcEEEEcCC--ccCCCCchHHHHHHHhcCceEEE
Q 013012 82 AT--VPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA 135 (451)
Q Consensus 82 ~~--~~~~~gt~~~l~~~~~~l~~~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~~t~ 135 (451)
+. .+...|+..+++.+++.+..+.++|++|| ++....+..+++.++..++++.+
T Consensus 70 i~d~~~g~~G~~~si~~gl~~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~ 127 (366)
T PRK14489 70 YPDILPGFQGPLSGILAGLEHADSEYLFVVACDTPFLPENLVKRLSKALAIEGADIAV 127 (366)
T ss_pred EecCCCCCCChHHHHHHHHHhcCCCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEE
Confidence 22 22236899999999888765679999999 56777788888876666665544
No 161
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.23 E-value=2e-10 Score=102.75 Aligned_cols=29 Identities=21% Similarity=0.481 Sum_probs=11.0
Q ss_pred eCCCCeeCCCcEECCCCEECCCCEECCCC
Q 013012 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKC 376 (451)
Q Consensus 348 i~~~~~i~~~~~i~~~~~i~~~~~i~~~~ 376 (451)
+.+.+.++.++.|+++++|+++++||++|
T Consensus 93 i~~~~~ig~~~~i~~~~~i~~~~~ig~~~ 121 (197)
T cd03360 93 VSPSAVIGEGCVIMAGAVINPDARIGDNV 121 (197)
T ss_pred ECCCCEECCCCEEcCCCEECCCCEECCCe
Confidence 33333333333333333333333333333
No 162
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.22 E-value=6.8e-11 Score=109.12 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=6.2
Q ss_pred eEECCCCEECCCcEE
Q 013012 415 SVICSNAQLQERVAL 429 (451)
Q Consensus 415 ~ii~~~~~i~~~~~i 429 (451)
++|+++|.||.++.|
T Consensus 177 viIgDnv~IGa~s~I 191 (272)
T PRK11830 177 VIIEDNCFIGARSEV 191 (272)
T ss_pred eEEcCCCEECCCCEE
Confidence 344444444444433
No 163
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.22 E-value=1.9e-10 Score=99.48 Aligned_cols=82 Identities=15% Similarity=0.276 Sum_probs=60.1
Q ss_pred CCEECCCCEECCCCEEe----ceEECCCCEECCCcEEec-------------eEECCCCEECCCcEEeCeEECCCCEECC
Q 013012 363 HCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVVN-------------SVVMNHVTIGDGCSIQGSVICSNAQLQE 425 (451)
Q Consensus 363 ~~~i~~~~~i~~~~~i~----~svig~~~~ig~~~~i~~-------------s~i~~~~~Ig~~~~i~~~ii~~~~~i~~ 425 (451)
+..||+++.|+++|.|. ++.||++|.|+++|+|.. ++|++++.|++++.+.++.|++++.|++
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~ 100 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGK 100 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECC
Confidence 44555555555555554 368999999999999974 4799999999999998888888887777
Q ss_pred CcEEc-ceEECCCCEECCCC
Q 013012 426 RVALK-DCQVLSLSTSVFLS 444 (451)
Q Consensus 426 ~~~i~-~~~ig~~~~i~~~~ 444 (451)
++.|+ +++|++++.+++++
T Consensus 101 ~~~Ig~~~~I~~~~~i~~g~ 120 (161)
T cd03359 101 NCVIGRRCIIKDCVKILDGT 120 (161)
T ss_pred CCEEcCCCEECCCcEECCCC
Confidence 77776 36666666555554
No 164
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.21 E-value=7.8e-11 Score=119.88 Aligned_cols=87 Identities=16% Similarity=0.276 Sum_probs=63.3
Q ss_pred cCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCCEECCCcE---------
Q 013012 342 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCS--------- 411 (451)
Q Consensus 342 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~-~s~i~~~~~Ig~~~~--------- 411 (451)
+.+++.|++++.|+++++|+ ++.||++|+|+++|.|.+++||++|.||+++++. ++.|++++.||+++.
T Consensus 283 I~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ig~~ 361 (459)
T PRK14355 283 ISGDTRIGEGCTIEQGVVIK-GCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEG 361 (459)
T ss_pred EeCCCEECCCCEECCCCEEe-CCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCEECCC
Confidence 34455666666666666663 5778888888888888888999999998888886 677777777776643
Q ss_pred --------EeCeEECCCCEECCCcEE
Q 013012 412 --------IQGSVICSNAQLQERVAL 429 (451)
Q Consensus 412 --------i~~~ii~~~~~i~~~~~i 429 (451)
++++.||+++.||.++++
T Consensus 362 ~~~~~~~~ig~~~ig~~~~ig~~~~~ 387 (459)
T PRK14355 362 SKASHLTYLGDATIGRNVNIGCGTIT 387 (459)
T ss_pred ceeeeeccccCCEECCCCEEccceee
Confidence 335677777777777643
No 165
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.21 E-value=5.3e-11 Score=120.84 Aligned_cols=105 Identities=20% Similarity=0.207 Sum_probs=62.0
Q ss_pred ccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEE----------------CCCcEEe-ceEECCC
Q 013012 341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRI----------------GSNVKVV-NSVVMNH 403 (451)
Q Consensus 341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~i----------------g~~~~i~-~s~i~~~ 403 (451)
++++++.|++++.|++++.|++++.||++|+|+++|.|.+|+||++|.| |++++|. +++|+++
T Consensus 251 ~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~ 330 (448)
T PRK14357 251 YIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKS 330 (448)
T ss_pred EEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCC
Confidence 3444555556666656556666666666666666666665555555555 4444443 3555555
Q ss_pred CEECCCcEEeCeEECCCCEECCCcEEcceEECCCCEECCCCc
Q 013012 404 VTIGDGCSIQGSVICSNAQLQERVALKDCQVLSLSTSVFLSL 445 (451)
Q Consensus 404 ~~Ig~~~~i~~~ii~~~~~i~~~~~i~~~~ig~~~~i~~~~~ 445 (451)
++||+++.+.+++|++++.+.+.+.+++++||+++.|++++.
T Consensus 331 ~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~ 372 (448)
T PRK14357 331 VKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTI 372 (448)
T ss_pred cEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcc
Confidence 555555555555555555555555556677777777777654
No 166
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.21 E-value=9.3e-11 Score=102.99 Aligned_cols=101 Identities=25% Similarity=0.406 Sum_probs=46.0
Q ss_pred CCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEe-------ceEECCCCEECCCcEEe-------------ceEECC
Q 013012 343 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-------RSVIGRHCRIGSNVKVV-------------NSVVMN 402 (451)
Q Consensus 343 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~-------~svig~~~~ig~~~~i~-------------~s~i~~ 402 (451)
++.+.|.|+|.|++++.||+-|+||++++|++++.|+ ++.||+++.|-+.+.|+ ..+|++
T Consensus 7 HPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~ 86 (260)
T COG1043 7 HPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGD 86 (260)
T ss_pred CcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECC
Confidence 3444555555555555554444444444444444443 23333333333333332 235555
Q ss_pred CCEECCCcEEe--------CeEECCCCEECCCcEEc-ceEECCCCEECCC
Q 013012 403 HVTIGDGCSIQ--------GSVICSNAQLQERVALK-DCQVLSLSTSVFL 443 (451)
Q Consensus 403 ~~~Ig~~~~i~--------~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~ 443 (451)
+++|-++++|. -+.||+++.+-..+.|. +|+||+++++..+
T Consensus 87 ~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNn 136 (260)
T COG1043 87 NNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANN 136 (260)
T ss_pred CCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecC
Confidence 55555555543 13444444444444444 3444444444433
No 167
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.21 E-value=3e-10 Score=102.65 Aligned_cols=49 Identities=22% Similarity=0.380 Sum_probs=22.3
Q ss_pred eEECCCCEECCCcEEe-----ceEECCCCEECCCcEEe-CeEECCCCEECCCcEE
Q 013012 381 SVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL 429 (451)
Q Consensus 381 svig~~~~ig~~~~i~-----~s~i~~~~~Ig~~~~i~-~~ii~~~~~i~~~~~i 429 (451)
++|++++.|++++.+. ++.|++++.|+.++.|. ++.|++++.|+.++.+
T Consensus 93 v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i 147 (205)
T cd03352 93 VIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGI 147 (205)
T ss_pred EEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEE
Confidence 3444555555544443 23444444444444442 4444444444444333
No 168
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.20 E-value=2.8e-10 Score=102.40 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=33.1
Q ss_pred EECCCCEECCCcEEe-ceEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-ceEECCCCEECCCCc
Q 013012 382 VIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVLSLSTSVFLSL 445 (451)
Q Consensus 382 vig~~~~ig~~~~i~-~s~i~~~~~Ig~~~~i~-~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~~ 445 (451)
+||++|.|++++.|. ++.|++++.|+.++.|. ++.|++++.|+.++.+. ++.||+++++++++.
T Consensus 119 ~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~ 185 (201)
T TIGR03570 119 RIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAV 185 (201)
T ss_pred EECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCCCEECCCCE
Confidence 344444444444443 35555555555555554 45555555555555554 355555555555543
No 169
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.20 E-value=3.3e-10 Score=101.37 Aligned_cols=67 Identities=18% Similarity=0.340 Sum_probs=27.1
Q ss_pred ceeCCCCeeCCCcEECCCCEECCCCEECCCCEEe-ceEECCCCEECCCcEEe-ceEECCCCEECCCcEE
Q 013012 346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSI 412 (451)
Q Consensus 346 ~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~-~svig~~~~ig~~~~i~-~s~i~~~~~Ig~~~~i 412 (451)
..++.++.|++++.|++++.||++|.|++++.|. +++||++|.|+.++.+. +++|++++.||.++.|
T Consensus 97 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v 165 (197)
T cd03360 97 AVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATI 165 (197)
T ss_pred CEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEE
Confidence 3344444444444444444444444444444443 23444444444444433 2334444444433333
No 170
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.18 E-value=1.3e-10 Score=118.50 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=59.5
Q ss_pred CCEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEE
Q 013012 363 HCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVAL 429 (451)
Q Consensus 363 ~~~i~~~~~i~~~~~i~-~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i 429 (451)
+++||.+|.|+++|.|. +++||++|.|++++.|.+++|++++.+++.+.+++++||+++.|+.++.+
T Consensus 316 ~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~ 383 (458)
T PRK14354 316 ESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTIT 383 (458)
T ss_pred CCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceee
Confidence 35677888888888888 68999999999999999999999999999999999999999999988765
No 171
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.17 E-value=2.3e-10 Score=117.02 Aligned_cols=100 Identities=20% Similarity=0.216 Sum_probs=74.4
Q ss_pred CceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe--------CeE
Q 013012 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ--------GSV 416 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~--------~~i 416 (451)
++.|++++.|++++.+.++++||+++.|+.++.+++++|++++.|++.+.+.+++|+++|.||.++.+. +++
T Consensus 322 ~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~ 401 (482)
T PRK14352 322 ESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTT 401 (482)
T ss_pred cCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCe
Confidence 344445555555555555555566666666666666778888888888888888999999999998775 388
Q ss_pred ECCCCEECCCcEEc-ceEECCCCEECCCC
Q 013012 417 ICSNAQLQERVALK-DCQVLSLSTSVFLS 444 (451)
Q Consensus 417 i~~~~~i~~~~~i~-~~~ig~~~~i~~~~ 444 (451)
||+++.||.++.|. ++.||++++|++++
T Consensus 402 IGd~~~iG~~~~i~~~~~Ig~~~~igags 430 (482)
T PRK14352 402 IGSHVRTGSDTMFVAPVTVGDGAYTGAGT 430 (482)
T ss_pred ECCCcEECCCCEEeCCCEECCCcEECCCC
Confidence 99999999999887 58888888888887
No 172
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.17 E-value=1.8e-10 Score=103.18 Aligned_cols=101 Identities=20% Similarity=0.268 Sum_probs=73.9
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCcccccccCC-cchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceee
Q 013012 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (451)
Q Consensus 1 m~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~g-kpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~ 79 (451)
|++.+||||||.|+|| +.+|+|++++| +|||+|+++.+... +++++|++++ + .. . ...
T Consensus 7 ~~i~~vILAgG~s~Rm------G~~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~-~---~~-~---------~~~ 65 (196)
T PRK00560 7 DNIPCVILAGGKSSRM------GENKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKD-K---KF-E---------FNA 65 (196)
T ss_pred cCceEEEECCcccccC------CCCceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECc-h---hc-c---------cCC
Confidence 3578999999999999 57999999999 99999999999876 8889988873 1 11 0 012
Q ss_pred EEEEc--CCCCChHHHHHHHHhcCCCCcEEEEcCC--ccCCCCchHH
Q 013012 80 EVATV--PEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAV 122 (451)
Q Consensus 80 ~i~~~--~~~~gt~~~l~~~~~~l~~~~~lvl~~D--~i~~~~~~~~ 122 (451)
.++.. ....|+..++..++.....+.++|++|| ++....++.+
T Consensus 66 ~~v~d~~~~~~gpl~gi~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 66 PFLLEKESDLFSPLFGIINAFLTLQTPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred cEEecCCCCCCCcHHHHHHHHHhcCCCeEEEEecCcCcCCHHHHHHH
Confidence 33322 2235777777776655556789999999 4445455555
No 173
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=2.5e-10 Score=111.53 Aligned_cols=91 Identities=25% Similarity=0.416 Sum_probs=76.5
Q ss_pred cEECCCCEECCCCEECCCCEEec-eEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCC-----cEEc-
Q 013012 358 TTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQER-----VALK- 430 (451)
Q Consensus 358 ~~i~~~~~i~~~~~i~~~~~i~~-svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~-----~~i~- 430 (451)
+.+.++++|+++|.|++++.|+. ++||++|.||+++.|.+|+||+++.||+++.|.+||||.+|+|+++ +.++
T Consensus 256 ~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~~i~d~~~g~ 335 (358)
T COG1208 256 AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGASLIIGDVVIGI 335 (358)
T ss_pred ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECCceeecceEecC
Confidence 67778888889999999888885 8999999999999999999999999999999999999999999951 4444
Q ss_pred ceEECCCCEECCCCccCC
Q 013012 431 DCQVLSLSTSVFLSLSSN 448 (451)
Q Consensus 431 ~~~ig~~~~i~~~~~~~~ 448 (451)
+|.+.+|+++++++....
T Consensus 336 ~~~i~~g~~~~~~~~~~~ 353 (358)
T COG1208 336 NSEILPGVVVGPGSVVES 353 (358)
T ss_pred ceEEcCceEeCCCccccC
Confidence 366667777766664443
No 174
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.15 E-value=2e-10 Score=113.06 Aligned_cols=107 Identities=21% Similarity=0.304 Sum_probs=79.8
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEE
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i 81 (451)
++.+||||||.|+|| +.+|+|++++|+|||+|+++.+... +++++|+++... ...+ .. .++.+
T Consensus 174 ~i~~iILAGG~SsRm------G~~K~ll~~~Gk~ll~~~l~~l~~~-~~~vvV~~~~~~----~~~~-~~-----~~v~~ 236 (369)
T PRK14490 174 PLSGLVLAGGRSSRM------GSDKALLSYHESNQLVHTAALLRPH-CQEVFISCRAEQ----AEQY-RS-----FGIPL 236 (369)
T ss_pred CceEEEEcCCccccC------CCCcEEEEECCccHHHHHHHHHHhh-CCEEEEEeCCch----hhHH-hh-----cCCcE
Confidence 468999999999999 4699999999999999999999764 788888776321 1111 11 13455
Q ss_pred EEcCC-CCChHHHHHHHHhcCCCCcEEEEcCC--ccCCCCchHHHHH
Q 013012 82 ATVPE-DVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAA 125 (451)
Q Consensus 82 ~~~~~-~~gt~~~l~~~~~~l~~~~~lvl~~D--~i~~~~~~~~l~~ 125 (451)
+.... ..|...+++.+++....+.++|++|| ++....+..+++.
T Consensus 237 i~d~~~~~Gpl~gi~~al~~~~~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 237 ITDSYLDIGPLGGLLSAQRHHPDAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred EeCCCCCCCcHHHHHHHHHhCCCCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 54333 37888888888777666679999999 6666677777764
No 175
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.13 E-value=6.8e-10 Score=91.65 Aligned_cols=28 Identities=7% Similarity=-0.139 Sum_probs=12.3
Q ss_pred eEECCCCEECCCcEEcceEECCCCEECCC
Q 013012 415 SVICSNAQLQERVALKDCQVLSLSTSVFL 443 (451)
Q Consensus 415 ~ii~~~~~i~~~~~i~~~~ig~~~~i~~~ 443 (451)
+.||+++.||.++.| +..||++++|+++
T Consensus 74 V~IG~~~~IG~ga~I-gv~IG~~~vIGaG 101 (147)
T cd04649 74 ISIGKRCLLGANSGI-GISLGDNCIVEAG 101 (147)
T ss_pred EEECCCCEECCCCEE-eEEECCCCEECCC
Confidence 344555555555544 3333333333333
No 176
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.13 E-value=1.7e-10 Score=109.78 Aligned_cols=102 Identities=20% Similarity=0.265 Sum_probs=79.1
Q ss_pred CceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe--------CeE
Q 013012 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ--------GSV 416 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~--------~~i 416 (451)
++.++.++.|||-+.+.|++.+++++.||..|.++++.||+++++++-++|+++.||.++.||.|+.-- .++
T Consensus 320 ~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~ 399 (460)
T COG1207 320 GSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTI 399 (460)
T ss_pred ccEecCCcccCCccccCCcCcccCCCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCcccceee
Confidence 444555666666666667777777777777778888888888888888888888888888888887664 588
Q ss_pred ECCCCEECCCcEEc-ceEECCCCEECCCCcc
Q 013012 417 ICSNAQLQERVALK-DCQVLSLSTSVFLSLS 446 (451)
Q Consensus 417 i~~~~~i~~~~~i~-~~~ig~~~~i~~~~~~ 446 (451)
||+++.||+++.+- -..||+|+.+++||-.
T Consensus 400 IGd~vFiGSns~LVAPV~IGd~a~iaAGStI 430 (460)
T COG1207 400 IGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 430 (460)
T ss_pred ecCCcEEccCCcEEeeEEecCCcEEcccceE
Confidence 99999999998876 4778888888877743
No 177
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.13 E-value=4.6e-10 Score=103.60 Aligned_cols=117 Identities=23% Similarity=0.309 Sum_probs=81.8
Q ss_pred EEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCC-CcEEEEEecCchhhHHHHHhhhhhccCceeeEEEE
Q 013012 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (451)
Q Consensus 5 avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~g-i~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~ 83 (451)
|||||||.|+|| . +|+|++++|+|||+|+++.+..++ +++++|+++.....+.+..++.. .++.++.
T Consensus 2 aiIlA~G~S~R~----~---~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~-----~~v~~v~ 69 (233)
T cd02518 2 AIIQARMGSTRL----P---GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK-----LGVKVFR 69 (233)
T ss_pred EEEeeCCCCCCC----C---CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH-----cCCeEEE
Confidence 799999999999 2 599999999999999999999987 89999998754211244444332 1244544
Q ss_pred cCCCCChHHHHHHHHhcCCCCcEEEEcCC--ccCCCCchHHHHHHHhcCceEE
Q 013012 84 VPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVT 134 (451)
Q Consensus 84 ~~~~~gt~~~l~~~~~~l~~~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~~t 134 (451)
.+.. +.......+.+....+.++++.|| ++....++.+++.+...+.+++
T Consensus 70 ~~~~-~~l~~~~~~~~~~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 70 GSEE-DVLGRYYQAAEEYNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred CCch-hHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 3332 222222233333334679999999 7788889999998876655554
No 178
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.12 E-value=3.7e-10 Score=112.12 Aligned_cols=67 Identities=34% Similarity=0.515 Sum_probs=43.7
Q ss_pred CCEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeC-----eEECCCCEECCCcEE
Q 013012 363 HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG-----SVICSNAQLQERVAL 429 (451)
Q Consensus 363 ~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~-----~ii~~~~~i~~~~~i 429 (451)
+++||++|.|+++|.|++|+|+++|.||++|+|.+|+|++++.|+.++.+.+ ++||+++.|+++++|
T Consensus 308 ~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 308 HSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKEVITVIGENEVIGVGTVI 379 (380)
T ss_pred ceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCCceeEEEeCCCCCCCCcEe
Confidence 4566666666666666666677777777666666667766777766666654 566666555555443
No 179
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.11 E-value=1.1e-09 Score=98.04 Aligned_cols=51 Identities=24% Similarity=0.480 Sum_probs=43.6
Q ss_pred CceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEEe
Q 013012 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV 396 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~ 396 (451)
++.+++++.|++++.+. ++.||.+|.|+.++.|.+++||++|.|+++++|.
T Consensus 19 ~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~ 69 (204)
T TIGR03308 19 ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRIN 69 (204)
T ss_pred ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEEC
Confidence 35677777777777774 7889999999999999999999999999999885
No 180
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.11 E-value=5.3e-10 Score=107.90 Aligned_cols=108 Identities=20% Similarity=0.282 Sum_probs=80.2
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEE
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~ 82 (451)
+.+||||||.|+|| +.+|+|+++.|+||++|+++.+... +.+++|+++.. ....+. .. .+.++
T Consensus 161 i~~IILAGGkSsRM------G~dKaLL~~~GkpLl~~~ie~l~~~-~~~ViVv~~~~----~~~~~~----~~--~v~~I 223 (346)
T PRK14500 161 LYGLVLTGGKSRRM------GKDKALLNYQGQPHAQYLYDLLAKY-CEQVFLSARPS----QWQGTP----LE--NLPTL 223 (346)
T ss_pred ceEEEEeccccccC------CCCcccceeCCccHHHHHHHHHHhh-CCEEEEEeCch----Hhhhcc----cc--CCeEE
Confidence 57999999999999 4799999999999999999998765 88898887632 111100 00 13343
Q ss_pred Ec-CCCCChHHHHHHHHhcCCCCcEEEEcCC--ccCCCCchHHHHHHH
Q 013012 83 TV-PEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHR 127 (451)
Q Consensus 83 ~~-~~~~gt~~~l~~~~~~l~~~~~lvl~~D--~i~~~~~~~~l~~~~ 127 (451)
.. ....|+..+|+.+++....+.++|++|| ++....+..+++.+.
T Consensus 224 ~D~~~~~GPlagI~aaL~~~~~~~~lVl~cDmP~l~~~~l~~L~~~~~ 271 (346)
T PRK14500 224 PDRGESVGPISGILTALQSYPGVNWLVVACDLAYLNSETVEKLLAHYR 271 (346)
T ss_pred eCCCCCCChHHHHHHHHHhCCCCCEEEEECCcCCCCHHHHHHHHHhhh
Confidence 32 2347999999999887765678999999 566667777777653
No 181
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.10 E-value=8.3e-10 Score=90.54 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=58.8
Q ss_pred CceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-CeEECCCCEE
Q 013012 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQL 423 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~-~~ii~~~~~i 423 (451)
++.|++++.|++++.+++++.|+++|.|++++.+.++.+. +..+..++.+.+++|++++.||.++.+. ++.|++++.|
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~-~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i 94 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYP-RSKIYRKWELKGTTVKRGASIGANATILPGVTIGEYALV 94 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCC-ccccccccccCCcEECCCcEECcCCEEeCCcEECCCCEE
Confidence 3344444444444444444444444444444444332222 2223345668899999999999999995 5899999999
Q ss_pred CCCcEEcceEECCCCEEC
Q 013012 424 QERVALKDCQVLSLSTSV 441 (451)
Q Consensus 424 ~~~~~i~~~~ig~~~~i~ 441 (451)
++++.+... +.+++++.
T Consensus 95 ~~~~~v~~~-i~~~~~~~ 111 (119)
T cd03358 95 GAGAVVTKD-VPPYALVV 111 (119)
T ss_pred ccCCEEeCc-CCCCeEEe
Confidence 999988864 66665554
No 182
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.03 E-value=1.3e-09 Score=107.72 Aligned_cols=80 Identities=18% Similarity=0.203 Sum_probs=72.6
Q ss_pred CCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEEcceEECCCCEECCCCccC
Q 013012 368 EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVLSLSTSVFLSLSS 447 (451)
Q Consensus 368 ~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~~~ig~~~~i~~~~~~~ 447 (451)
+.+.|+++|.|++|+||++|.|+ +.|.+|+||++|.||++|.|.+|+|++++.|++++.+.+|+||++++|++++...
T Consensus 277 ~p~~i~~~~~i~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~ 354 (369)
T TIGR02092 277 PPTYYAENSKVENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIA 354 (369)
T ss_pred CCcEEcCCCEEEEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEeC
Confidence 56777788888899999999997 4699999999999999999999999999999999999999999999999988665
Q ss_pred CC
Q 013012 448 NE 449 (451)
Q Consensus 448 ~~ 449 (451)
+.
T Consensus 355 ~~ 356 (369)
T TIGR02092 355 GT 356 (369)
T ss_pred CC
Confidence 43
No 183
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.03 E-value=2.8e-09 Score=98.24 Aligned_cols=92 Identities=17% Similarity=0.304 Sum_probs=41.7
Q ss_pred eeCCCCeeCCCcEECCCCEECCCCE-ECCCCE---Ee-ceEECCCCEECCCcEEeceEECCC---CEECCCcEEeCeEEC
Q 013012 347 IIHPSAELGSKTTVGPHCMLGEGSQ-MGDKCS---VK-RSVIGRHCRIGSNVKVVNSVVMNH---VTIGDGCSIQGSVIC 418 (451)
Q Consensus 347 ~i~~~~~i~~~~~i~~~~~i~~~~~-i~~~~~---i~-~svig~~~~ig~~~~i~~s~i~~~---~~Ig~~~~i~~~ii~ 418 (451)
.|.+++.|++++.|.++++|+.++. +|.++. |. .++||++|.||.+|.|..+..+.+ +.||++| .||
T Consensus 186 ~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsGg~~~~V~IGe~~-----lIG 260 (341)
T TIGR03536 186 RVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSGGGNIVISVGEGC-----LLG 260 (341)
T ss_pred eEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeCCCceeEEECCCc-----EEC
Confidence 3333444444444444444444443 333332 22 356777777777777742222221 3333332 233
Q ss_pred CCCEECCCcEEc-ceEECCCCEECCCCc
Q 013012 419 SNAQLQERVALK-DCQVLSLSTSVFLSL 445 (451)
Q Consensus 419 ~~~~i~~~~~i~-~~~ig~~~~i~~~~~ 445 (451)
.++.| +..|+ +|+||+|++|.++++
T Consensus 261 agA~I--GI~IGd~~iIGAGavVtagTk 286 (341)
T TIGR03536 261 ANAGI--GIPLGDRCTVEAGLYITAGTK 286 (341)
T ss_pred CCCEE--eeEECCCCEECCCCEEeCCcE
Confidence 44444 34444 266666666666554
No 184
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=99.01 E-value=1.7e-09 Score=106.59 Aligned_cols=83 Identities=19% Similarity=0.251 Sum_probs=74.9
Q ss_pred EECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEEcceEECCCCEECCCC
Q 013012 365 MLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVLSLSTSVFLS 444 (451)
Q Consensus 365 ~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~~~ig~~~~i~~~~ 444 (451)
.+-+.+.|++.+.|.+|+||++|.|+.+ +|.+|+|+++|+||++|.|.+|+|++++.|++++.|.+|+||+++.|++++
T Consensus 279 ~~~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~ 357 (361)
T TIGR02091 279 FLPPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGV 357 (361)
T ss_pred CCCCceEecCCCEEECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCC
Confidence 3455677777778888999999999987 899999999999999999999999999999999999999999999999998
Q ss_pred ccCC
Q 013012 445 LSSN 448 (451)
Q Consensus 445 ~~~~ 448 (451)
...+
T Consensus 358 ~i~~ 361 (361)
T TIGR02091 358 VIGN 361 (361)
T ss_pred EeCC
Confidence 7543
No 185
>PLN02694 serine O-acetyltransferase
Probab=98.99 E-value=1.8e-09 Score=99.67 Aligned_cols=92 Identities=22% Similarity=0.299 Sum_probs=66.0
Q ss_pred CceeCCCCeeCCCcEECC--CCEECCCCEECCCCEEec-eEECCCCEECCCcEEeceEECCCCEECCCcEE-eCeEECCC
Q 013012 345 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI-QGSVICSN 420 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~i~~-svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i-~~~ii~~~ 420 (451)
.+.|++++.||+++.|.. +++||++|.||++|.|.+ +++|.. +..+..++++|+++|.||.++.| +++.||++
T Consensus 160 gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~---g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~ 236 (294)
T PLN02694 160 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT---GKACGDRHPKIGDGVLIGAGATILGNVKIGEG 236 (294)
T ss_pred eEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCc---ccccCCCccEECCCeEECCeeEECCCCEECCC
Confidence 456788888888877754 677777777777776553 333332 34455668899999999999988 78999999
Q ss_pred CEECCCcEEcceEECCCCEE
Q 013012 421 AQLQERVALKDCQVLSLSTS 440 (451)
Q Consensus 421 ~~i~~~~~i~~~~ig~~~~i 440 (451)
++|+++++|... |.+++++
T Consensus 237 a~IGAgSVV~kd-VP~~~~v 255 (294)
T PLN02694 237 AKIGAGSVVLID-VPPRTTA 255 (294)
T ss_pred CEECCCCEECCc-CCCCcEE
Confidence 999999988753 3444443
No 186
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.99 E-value=3.3e-09 Score=93.37 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=62.5
Q ss_pred ccccccCCccccCCCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEe-------------ceEECCCCEECCCcEEe-
Q 013012 331 GEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-------------RSVIGRHCRIGSNVKVV- 396 (451)
Q Consensus 331 ~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~-------------~svig~~~~ig~~~~i~- 396 (451)
.+...+.+++.+++++.|+.++.|++.++|.+.+.||++++|-+.+.|+ ..+||++|.|.++++|.
T Consensus 19 g~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~vTi~~ 98 (260)
T COG1043 19 GEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVTIHR 98 (260)
T ss_pred CCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeEEEEec
Confidence 3344445555555555566666655555555556666666555555552 24677777777777763
Q ss_pred -------ceEECC------CCEECCCcEEe-------------CeEECCCCEECCCcEEcc-eEECCCCEECCCCccCCC
Q 013012 397 -------NSVVMN------HVTIGDGCSIQ-------------GSVICSNAQLQERVALKD-CQVLSLSTSVFLSLSSNE 449 (451)
Q Consensus 397 -------~s~i~~------~~~Ig~~~~i~-------------~~ii~~~~~i~~~~~i~~-~~ig~~~~i~~~~~~~~~ 449 (451)
-+.|++ +++|+++|+|+ ...||+.+.||..+-+.. |.||+.+-|+..|-...|
T Consensus 99 GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~~amiGg~S~v~~D 178 (260)
T COG1043 99 GTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQD 178 (260)
T ss_pred cccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcchheeccccccccC
Confidence 122222 33333333332 223334444443333333 777777777766654444
No 187
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.98 E-value=2.7e-09 Score=92.20 Aligned_cols=91 Identities=23% Similarity=0.295 Sum_probs=53.4
Q ss_pred CceeCCCCeeCCCcEECC--CCEECCCCEECCCCEEeceEECCCCEECCCc---EEeceEECCCCEECCCcEEe-CeEEC
Q 013012 345 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNV---KVVNSVVMNHVTIGDGCSIQ-GSVIC 418 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~i~~svig~~~~ig~~~---~i~~s~i~~~~~Ig~~~~i~-~~ii~ 418 (451)
...|++++.|+++++|+. +++|+++|.||++| .|+++|.|+... ....++|+++|.||.++.|. ++.||
T Consensus 61 ~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~-----~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG 135 (162)
T TIGR01172 61 GVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDV-----TIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVG 135 (162)
T ss_pred CeEeCCCCEECCCeEECCCCeEEECCCCEECCCC-----EEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEEC
Confidence 344555555555544432 23444444444433 333333333221 12246899999999999884 68899
Q ss_pred CCCEECCCcEEcceEECCCCEEC
Q 013012 419 SNAQLQERVALKDCQVLSLSTSV 441 (451)
Q Consensus 419 ~~~~i~~~~~i~~~~ig~~~~i~ 441 (451)
+++.|++++.|... |.+++++.
T Consensus 136 ~~~~Iga~s~V~~d-vp~~~~~~ 157 (162)
T TIGR01172 136 ENAKIGANSVVLKD-VPPGATVV 157 (162)
T ss_pred CCCEECCCCEECCC-CCCCCEEE
Confidence 99999999888753 56666653
No 188
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.98 E-value=4.4e-09 Score=96.99 Aligned_cols=95 Identities=13% Similarity=-0.014 Sum_probs=50.1
Q ss_pred CceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECCCCE---ECCCcEEe-ceEECCCCEECCCcEEeC----eE
Q 013012 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCR---IGSNVKVV-NSVVMNHVTIGDGCSIQG----SV 416 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~---ig~~~~i~-~s~i~~~~~Ig~~~~i~~----~i 416 (451)
++.|++++.|..+++||++++|.++++|+.++. .+|+.+. |..++.|+ +|.|++++.|+. +..++ +.
T Consensus 178 gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAg----tiG~~~IEgrInsGavIGhds~IG~gasIg~-tLsGg~~~~V~ 252 (341)
T TIGR03536 178 GVRIADTARVRLGAYVGEGTTVMHEGFINFNAG----TEGPSMVEGRISAGVMVGKGSDLGGGCSTMG-TLSGGGNIVIS 252 (341)
T ss_pred CcEEcCCCeEcCCcEECCCCEEecCCEECcCcE----ecCCceEecccccCCEECCCCEECCCCEEeE-EEeCCCceeEE
Confidence 334444444444444444444444444444333 1343333 33333333 344444444411 12234 67
Q ss_pred ECCCCEECCCcEEcceEECCCCEECCCCc
Q 013012 417 ICSNAQLQERVALKDCQVLSLSTSVFLSL 445 (451)
Q Consensus 417 i~~~~~i~~~~~i~~~~ig~~~~i~~~~~ 445 (451)
||++|.||.++.| +..||++++|++|+-
T Consensus 253 IGe~~lIGagA~I-GI~IGd~~iIGAGav 280 (341)
T TIGR03536 253 VGEGCLLGANAGI-GIPLGDRCTVEAGLY 280 (341)
T ss_pred ECCCcEECCCCEE-eeEECCCCEECCCCE
Confidence 8888888888888 888888888888773
No 189
>PRK10502 putative acyl transferase; Provisional
Probab=98.97 E-value=4e-09 Score=93.04 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=57.8
Q ss_pred eeCCCCeeCCCcEECC--CCEECCCCEECCCCEEe---ceEECCCCEECCCcEEe----------------ceEECCCCE
Q 013012 347 IIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVK---RSVIGRHCRIGSNVKVV----------------NSVVMNHVT 405 (451)
Q Consensus 347 ~i~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~i~---~svig~~~~ig~~~~i~----------------~s~i~~~~~ 405 (451)
.+++++.|++++.|.. +..||++|.|++++.|. ..+||++|.|++++.|. ..+|++++.
T Consensus 53 ~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~ 132 (182)
T PRK10502 53 KIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCW 132 (182)
T ss_pred ccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcE
Confidence 3445555555554432 46667777777777665 46899999999888874 246666666
Q ss_pred ECCCcEE-eCeEECCCCEECCCcEEcceEECCCCEE
Q 013012 406 IGDGCSI-QGSVICSNAQLQERVALKDCQVLSLSTS 440 (451)
Q Consensus 406 Ig~~~~i-~~~ii~~~~~i~~~~~i~~~~ig~~~~i 440 (451)
||.++.| .++.||+++.|++++++... +.+++++
T Consensus 133 Ig~~a~I~~Gv~Ig~~~vIga~svV~~~-v~~~~v~ 167 (182)
T PRK10502 133 LAADVFVAPGVTIGSGAVVGARSSVFKS-LPANTIC 167 (182)
T ss_pred EcCCCEEcCCCEECCCCEECCCCEEecc-cCCCcEE
Confidence 6666666 36666666666666665532 3444443
No 190
>PRK10191 putative acyl transferase; Provisional
Probab=98.96 E-value=5.5e-09 Score=87.92 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=52.8
Q ss_pred eCCCCeeCCCcEECC--CCEECCCCEECCCCEEeceEECCCCEECCCcEE--eceEECCCCEECCCcEEe-CeEECCCCE
Q 013012 348 IHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKV--VNSVVMNHVTIGDGCSIQ-GSVICSNAQ 422 (451)
Q Consensus 348 i~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i--~~s~i~~~~~Ig~~~~i~-~~ii~~~~~ 422 (451)
|++++.+++++.|++ ++.|++++.||++| .|+++|.||+.... ..+.|++++.||.++.+. ++.||++++
T Consensus 44 I~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~-----~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~ 118 (146)
T PRK10191 44 IQAAATIGRRFTIHHGYAVVINKNVVAGDDF-----TIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVT 118 (146)
T ss_pred cCCCCEECCCeEECCCCeEEECCCcEECCCC-----EECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCE
Confidence 444455555555544 34555555555544 34444444433222 235777888888777774 677888888
Q ss_pred ECCCcEEcceEECCCCEECCCC
Q 013012 423 LQERVALKDCQVLSLSTSVFLS 444 (451)
Q Consensus 423 i~~~~~i~~~~ig~~~~i~~~~ 444 (451)
|++++.+.+.+-....+++..+
T Consensus 119 Igags~V~~dv~~~~~v~G~pA 140 (146)
T PRK10191 119 VGAGSVVLDSVPDNALVVGEKA 140 (146)
T ss_pred ECCCCEECCccCCCcEEEccCc
Confidence 8888877765545444444443
No 191
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.96 E-value=8.3e-09 Score=90.68 Aligned_cols=93 Identities=22% Similarity=0.310 Sum_probs=58.9
Q ss_pred CceeCCCC--eeCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEEe-------------------ceEECCC
Q 013012 345 NNIIHPSA--ELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-------------------NSVVMNH 403 (451)
Q Consensus 345 ~~~i~~~~--~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~-------------------~s~i~~~ 403 (451)
+++|.|++ .++.++.||+++.|+.+|+|++.+.| .||++|.|+++|.|. ...|+++
T Consensus 59 ~~~i~~~~~~~~g~~i~iG~~~~in~~~~i~d~~~I---~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~ 135 (183)
T PRK10092 59 EAYIEPTFRCDYGYNIFLGNNFYANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNN 135 (183)
T ss_pred CEEEeCCEEEeecCCcEEcCCcEECCceEEecCceE---EECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCC
Confidence 45566655 34666677777777777777666554 889999999988884 2455666
Q ss_pred CEECCCcEEe-CeEECCCCEECCCcEEcceEECCCCEEC
Q 013012 404 VTIGDGCSIQ-GSVICSNAQLQERVALKDCQVLSLSTSV 441 (451)
Q Consensus 404 ~~Ig~~~~i~-~~ii~~~~~i~~~~~i~~~~ig~~~~i~ 441 (451)
|.||.+|.|. ++.||++++|+++++|... |.+++++.
T Consensus 136 v~IG~~a~I~~gv~IG~~~vIgagsvV~~d-i~~~~i~~ 173 (183)
T PRK10092 136 VWIGGRAVINPGVTIGDNVVVASGAVVTKD-VPDNVVVG 173 (183)
T ss_pred cEECCCCEECCCCEECCCCEECCCCEEccc-cCCCcEEE
Confidence 6666666553 5666666666666665542 34554443
No 192
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.96 E-value=9.7e-09 Score=91.41 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=57.1
Q ss_pred CCceeCCCCeeCCCcEECCCCEECCCCEECCCCEEe---ceEECCCCEECCCcEEec-------------------eEEC
Q 013012 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK---RSVIGRHCRIGSNVKVVN-------------------SVVM 401 (451)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~---~svig~~~~ig~~~~i~~-------------------s~i~ 401 (451)
.+++|.+++.+. .|.++.||+++.|+.+|.|. +..||++|.|+++|.|.. .+|+
T Consensus 60 ~~~~I~~~~~~~----~g~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IG 135 (203)
T PRK09527 60 ENAWVEPPVYFS----YGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIG 135 (203)
T ss_pred CCcEEcCCEEEe----eCCCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEEC
Confidence 455566655541 23444555555555555542 368999999999998861 4677
Q ss_pred CCCEECCCcEEe-CeEECCCCEECCCcEEcceEECCCCEE
Q 013012 402 NHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVLSLSTS 440 (451)
Q Consensus 402 ~~~~Ig~~~~i~-~~ii~~~~~i~~~~~i~~~~ig~~~~i 440 (451)
++|.||.++.|. ++.||++++|+++++|... |.+++++
T Consensus 136 d~v~IG~~~~I~~gv~IG~~~vIgagsvV~kd-vp~~~v~ 174 (203)
T PRK09527 136 NNVWIGSHVVINPGVTIGDNSVIGAGSVVTKD-IPPNVVA 174 (203)
T ss_pred CCcEECCCCEEcCCCEECCCCEECCCCEEccc-CCCCcEE
Confidence 777777777663 6677777777777776642 4444444
No 193
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.96 E-value=6.9e-09 Score=95.25 Aligned_cols=14 Identities=14% Similarity=-0.116 Sum_probs=7.2
Q ss_pred eEECCCCEECCCCc
Q 013012 432 CQVLSLSTSVFLSL 445 (451)
Q Consensus 432 ~~ig~~~~i~~~~~ 445 (451)
|+||+|++|.+++|
T Consensus 248 ~VVGAGaVVtkgT~ 261 (319)
T TIGR03535 248 CVVEAGLYVTAGTK 261 (319)
T ss_pred CEECCCCEEeCCeE
Confidence 55555555555544
No 194
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.96 E-value=4.3e-09 Score=97.30 Aligned_cols=91 Identities=20% Similarity=0.273 Sum_probs=55.3
Q ss_pred CceeCCCCeeCCCcEECC--CCEECCCCEECCCCEEeceEECCCCEECC---CcEEeceEECCCCEECCCcEE-eCeEEC
Q 013012 345 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGS---NVKVVNSVVMNHVTIGDGCSI-QGSVIC 418 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~i~~svig~~~~ig~---~~~i~~s~i~~~~~Ig~~~~i-~~~ii~ 418 (451)
.+.|++++.||+++.|+. +++||++|.||++|. |..+|+||. .+...+++|+++|.||.||.| +++.||
T Consensus 141 gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~-----I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG 215 (273)
T PRK11132 141 QVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVS-----ILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVG 215 (273)
T ss_pred eeEecCcceECCCeEEcCCCCeEECCCCEECCCCE-----EcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEEC
Confidence 445566666665555542 334444444444442 344444442 122235788999999999887 578899
Q ss_pred CCCEECCCcEEcceEECCCCEEC
Q 013012 419 SNAQLQERVALKDCQVLSLSTSV 441 (451)
Q Consensus 419 ~~~~i~~~~~i~~~~ig~~~~i~ 441 (451)
+++.||++++|.+. |.+++++.
T Consensus 216 ~~a~IGAgSvV~~d-Vp~~~~v~ 237 (273)
T PRK11132 216 RGAKIGAGSVVLQP-VPPHTTAA 237 (273)
T ss_pred CCCEECCCCEECcc-cCCCcEEE
Confidence 99999999988753 55555543
No 195
>PRK10502 putative acyl transferase; Provisional
Probab=98.95 E-value=7.4e-09 Score=91.36 Aligned_cols=66 Identities=20% Similarity=0.124 Sum_probs=47.8
Q ss_pred ceEECCCCEECCCcEEe---ceEECCCCEECCCcEEe----------------CeEECCCCEECCCcEEc-ceEECCCCE
Q 013012 380 RSVIGRHCRIGSNVKVV---NSVVMNHVTIGDGCSIQ----------------GSVICSNAQLQERVALK-DCQVLSLST 439 (451)
Q Consensus 380 ~svig~~~~ig~~~~i~---~s~i~~~~~Ig~~~~i~----------------~~ii~~~~~i~~~~~i~-~~~ig~~~~ 439 (451)
+..||++|.|++++.|. ..+|+++|.|++++.|. ..+||+++.|++++.|. ++.||++++
T Consensus 71 ~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~v 150 (182)
T PRK10502 71 KLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAV 150 (182)
T ss_pred eEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCE
Confidence 35677777777777775 56777777777777662 24778888888888775 577788777
Q ss_pred ECCCCc
Q 013012 440 SVFLSL 445 (451)
Q Consensus 440 i~~~~~ 445 (451)
|++++.
T Consensus 151 Iga~sv 156 (182)
T PRK10502 151 VGARSS 156 (182)
T ss_pred ECCCCE
Confidence 777764
No 196
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.93 E-value=8.4e-09 Score=94.72 Aligned_cols=32 Identities=6% Similarity=0.211 Sum_probs=18.3
Q ss_pred eEECCCCEECCCcEEeCeEECCCCEECCCcEEc
Q 013012 398 SVVMNHVTIGDGCSIQGSVICSNAQLQERVALK 430 (451)
Q Consensus 398 s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~ 430 (451)
+.|+++|.||.+|.| +..||++|+|+.|++|.
T Consensus 226 V~IGe~~~IGagA~I-GI~IGd~~VVGAGaVVt 257 (319)
T TIGR03535 226 ISIGERCLLGANSGL-GISLGDDCVVEAGLYVT 257 (319)
T ss_pred EEECCCcEECCCCEE-CeEECCCCEECCCCEEe
Confidence 455555555555555 55555555555555554
No 197
>PLN02357 serine acetyltransferase
Probab=98.92 E-value=6.9e-09 Score=98.63 Aligned_cols=84 Identities=21% Similarity=0.335 Sum_probs=53.7
Q ss_pred CceeCCCCeeCCCcEECC--CCEECCCCEECCCCEEec-eEECCCCEECCCcEEeceEECCCCEECCCcEE-eCeEECCC
Q 013012 345 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI-QGSVICSN 420 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~i~~-svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i-~~~ii~~~ 420 (451)
.+.|++++.||.++.|.. +++||++|+||++|.|.+ ++||.. |.....++++|+++|.||.|+.| +++.||++
T Consensus 226 ~vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~---g~~~g~~~piIGd~V~IGagA~IlggV~IGdg 302 (360)
T PLN02357 226 AVDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGT---GKQSGDRHPKIGDGVLIGAGTCILGNITIGEG 302 (360)
T ss_pred ceeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCc---cccCCccCceeCCCeEECCceEEECCeEECCC
Confidence 345677777777766653 456666666666665432 233321 11112346788888888888776 67888888
Q ss_pred CEECCCcEEcc
Q 013012 421 AQLQERVALKD 431 (451)
Q Consensus 421 ~~i~~~~~i~~ 431 (451)
++||++++|..
T Consensus 303 a~IGAgSVV~~ 313 (360)
T PLN02357 303 AKIGAGSVVLK 313 (360)
T ss_pred CEECCCCEECc
Confidence 88888888765
No 198
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.92 E-value=6.8e-09 Score=104.70 Aligned_cols=97 Identities=19% Similarity=0.271 Sum_probs=78.7
Q ss_pred ceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECC----------------C---CEECCCcEEeceEECCCCEE
Q 013012 346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGR----------------H---CRIGSNVKVVNSVVMNHVTI 406 (451)
Q Consensus 346 ~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~----------------~---~~ig~~~~i~~s~i~~~~~I 406 (451)
++|++++.|+ ++.| .+++|+++|.|+++|.|.+|+|.. + +.||++|+|.+++|+++|.|
T Consensus 316 s~I~~~~~I~-~~~I-~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~I 393 (436)
T PLN02241 316 SIISHGCFLR-ECKI-EHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARI 393 (436)
T ss_pred eEEcCCcEEc-CeEE-EeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEE
Confidence 6788999998 8888 478999999999999999987744 3 38999999999999999999
Q ss_pred CCCcEEeCe-EECCCCEECCCcEEc-c-eEECCCCEECCCC
Q 013012 407 GDGCSIQGS-VICSNAQLQERVALK-D-CQVLSLSTSVFLS 444 (451)
Q Consensus 407 g~~~~i~~~-ii~~~~~i~~~~~i~-~-~~ig~~~~i~~~~ 444 (451)
|+++.|.++ =+.+..++|+++.++ + ++||+++.+++++
T Consensus 394 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 434 (436)
T PLN02241 394 GKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGT 434 (436)
T ss_pred CCCcEEecccccCCccccccccEEeCCEEEEcCCcEeCCCC
Confidence 999999633 344555556666665 3 6888888888775
No 199
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.92 E-value=7e-09 Score=93.25 Aligned_cols=86 Identities=16% Similarity=0.310 Sum_probs=51.7
Q ss_pred CceeCCCCeeCCCcEECCCCEECCCCEECCCCEEec-eEECCCCEECCCcEEe---------ceEECCCCEECCCc-EEe
Q 013012 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV---------NSVVMNHVTIGDGC-SIQ 413 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~-svig~~~~ig~~~~i~---------~s~i~~~~~Ig~~~-~i~ 413 (451)
.++|++++.+.+.++|-=++.++++|.|..+++++. .+||+||.||-++.|. -.+|++||.||.++ .+.
T Consensus 120 ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~ve 199 (271)
T COG2171 120 GAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVE 199 (271)
T ss_pred ccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEe
Confidence 444444444444444433444555555555555543 5677777777777774 35777777777776 446
Q ss_pred CeEECCCCEECCCcEEc
Q 013012 414 GSVICSNAQLQERVALK 430 (451)
Q Consensus 414 ~~ii~~~~~i~~~~~i~ 430 (451)
++++|++|+|..|++|.
T Consensus 200 GV~vGdg~VV~aGv~I~ 216 (271)
T COG2171 200 GVIVGDGCVVAAGVFIT 216 (271)
T ss_pred eeEeCCCcEEecceEEe
Confidence 77777777777776665
No 200
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.91 E-value=5.4e-09 Score=105.12 Aligned_cols=99 Identities=13% Similarity=0.259 Sum_probs=79.1
Q ss_pred CceeCCCCeeCCCcEECCCCEECCCCEECCCCEEeceEECC-------------------CCEECCCcEEeceEECCCCE
Q 013012 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGR-------------------HCRIGSNVKVVNSVVMNHVT 405 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~-------------------~~~ig~~~~i~~s~i~~~~~ 405 (451)
+++|++++.| +++.|+ +++|+++|.|+++|.|.+|+|+. +|.||++|.|.+|+|++++.
T Consensus 308 ~~~ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~ 385 (429)
T PRK02862 308 ESIIAEGCII-KNCSIH-HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNAR 385 (429)
T ss_pred eCEECCCCEE-CCcEEE-EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcE
Confidence 4688999988 788884 79999999999999999999975 79999999999999999999
Q ss_pred ECCCcEEeCeE-ECCCCEECCCcEEc-c-eEECCCCEECCCCc
Q 013012 406 IGDGCSIQGSV-ICSNAQLQERVALK-D-CQVLSLSTSVFLSL 445 (451)
Q Consensus 406 Ig~~~~i~~~i-i~~~~~i~~~~~i~-~-~~ig~~~~i~~~~~ 445 (451)
||++|+|.++. +..-=.-.+++++. + |+|+.+++++++++
T Consensus 386 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (429)
T PRK02862 386 IGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTV 428 (429)
T ss_pred ECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCCCCCCC
Confidence 99999997432 22211122355555 3 88888888888765
No 201
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.90 E-value=2.1e-08 Score=89.21 Aligned_cols=93 Identities=18% Similarity=0.243 Sum_probs=54.5
Q ss_pred eeCCCCeeCCCcEE----CCCCEECCCCEECCCCEEe---ceEECCCCEECCCcEEec----------------------
Q 013012 347 IIHPSAELGSKTTV----GPHCMLGEGSQMGDKCSVK---RSVIGRHCRIGSNVKVVN---------------------- 397 (451)
Q Consensus 347 ~i~~~~~i~~~~~i----~~~~~i~~~~~i~~~~~i~---~svig~~~~ig~~~~i~~---------------------- 397 (451)
.+++++.++.++.+ .+...||+++.|++++.|. +++||++|.|++++.|.+
T Consensus 45 ~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~ 124 (192)
T PRK09677 45 NFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMR 124 (192)
T ss_pred EECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhc
Confidence 34444444444444 2345666666666666664 467888888888877753
Q ss_pred ------eEECCCCEECCCcEEe-CeEECCCCEECCCcEEcceEECCCCEE
Q 013012 398 ------SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVLSLSTS 440 (451)
Q Consensus 398 ------s~i~~~~~Ig~~~~i~-~~ii~~~~~i~~~~~i~~~~ig~~~~i 440 (451)
++|++++.||.++.|. ++.||++++|+++++|.+. |.+++++
T Consensus 125 ~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~-i~~~~~~ 173 (192)
T PRK09677 125 TLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKS-IPENTVI 173 (192)
T ss_pred ccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcc-cCCCcEE
Confidence 3455566666655553 5566666666666666543 4444443
No 202
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.89 E-value=9.9e-09 Score=100.87 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=55.9
Q ss_pred EECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEE-----eCeEECCCCEECCCc-EEcceEECCCC
Q 013012 365 MLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI-----QGSVICSNAQLQERV-ALKDCQVLSLS 438 (451)
Q Consensus 365 ~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i-----~~~ii~~~~~i~~~~-~i~~~~ig~~~ 438 (451)
.+.+.+.|+++|.|.+++|+.+|.||++|+|++|+|++++.||++|.| .+|+|++++.|+++. .+.+++||+++
T Consensus 250 ~i~~~~~i~~~~~i~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~ 329 (353)
T TIGR01208 250 KIRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQARIVDSVIGKKV 329 (353)
T ss_pred EEcCCEEECCCCEEeCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCCCEEcCCcceeecCEEcCCC
Confidence 333344444444444455555566666666666666666666666655 588999999998884 77889999999
Q ss_pred EECCCCccC
Q 013012 439 TSVFLSLSS 447 (451)
Q Consensus 439 ~i~~~~~~~ 447 (451)
.|+++.+..
T Consensus 330 ~i~~~~~~~ 338 (353)
T TIGR01208 330 RIKGNRRRP 338 (353)
T ss_pred EECCCcccc
Confidence 999987654
No 203
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.89 E-value=1.9e-08 Score=87.82 Aligned_cols=78 Identities=21% Similarity=0.322 Sum_probs=48.6
Q ss_pred CCEECCCCEECCCCEEe---ceEECCCCEECCCcEEe-------------------ceEECCCCEECCCcEE-eCeEECC
Q 013012 363 HCMLGEGSQMGDKCSVK---RSVIGRHCRIGSNVKVV-------------------NSVVMNHVTIGDGCSI-QGSVICS 419 (451)
Q Consensus 363 ~~~i~~~~~i~~~~~i~---~svig~~~~ig~~~~i~-------------------~s~i~~~~~Ig~~~~i-~~~ii~~ 419 (451)
++.||+++.|+.++.|. +.+||++|.|+++|.|. .++|++++.||.++.| .++.||+
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~ 141 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGD 141 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEECC
Confidence 33444444444444442 35788888888888884 3567777777777766 3667777
Q ss_pred CCEECCCcEEcceEECCCCEEC
Q 013012 420 NAQLQERVALKDCQVLSLSTSV 441 (451)
Q Consensus 420 ~~~i~~~~~i~~~~ig~~~~i~ 441 (451)
+++|+++++|.+. |.+++++.
T Consensus 142 ~~~VgagavV~~~-vp~~~vv~ 162 (169)
T cd03357 142 NSVIGAGSVVTKD-IPANVVAA 162 (169)
T ss_pred CCEECCCCEEccc-cCCCcEEE
Confidence 7777777777653 45555443
No 204
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.88 E-value=2e-08 Score=79.65 Aligned_cols=80 Identities=25% Similarity=0.449 Sum_probs=51.0
Q ss_pred eeCCCCeeCCCcEECC--CCEECCCCEECCCCEEeceEECCCCEECCCcE---EeceEECCCCEECCCcEEe-CeEECCC
Q 013012 347 IIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVK---VVNSVVMNHVTIGDGCSIQ-GSVICSN 420 (451)
Q Consensus 347 ~i~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~---i~~s~i~~~~~Ig~~~~i~-~~ii~~~ 420 (451)
.+++++.|+++++++. .++|++++.|+++| .|+.++.|++++. +..++|++++.|+.++.+. ++.|+++
T Consensus 4 ~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~-----~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~ 78 (101)
T cd03354 4 DIHPGAKIGPGLFIDHGTGIVIGETAVIGDNC-----TIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDN 78 (101)
T ss_pred EeCCCCEECCCEEECCCCeEEECCCCEECCCC-----EEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCC
Confidence 3455555555555543 33455555555554 4566666666664 5677888888888888775 3777777
Q ss_pred CEECCCcEEcc
Q 013012 421 AQLQERVALKD 431 (451)
Q Consensus 421 ~~i~~~~~i~~ 431 (451)
++|++++.|..
T Consensus 79 ~~i~~~~~i~~ 89 (101)
T cd03354 79 VKIGANAVVTK 89 (101)
T ss_pred CEECCCCEECc
Confidence 77777777664
No 205
>PRK10191 putative acyl transferase; Provisional
Probab=98.86 E-value=2.1e-08 Score=84.39 Aligned_cols=85 Identities=18% Similarity=0.293 Sum_probs=55.2
Q ss_pred CceeCCCCeeCC--CcEECCCCEECCCCEECCCCEEe--------ceEECCCCEECCCcEEe-ceEECCCCEECCCcEEe
Q 013012 345 NNIIHPSAELGS--KTTVGPHCMLGEGSQMGDKCSVK--------RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ 413 (451)
Q Consensus 345 ~~~i~~~~~i~~--~~~i~~~~~i~~~~~i~~~~~i~--------~svig~~~~ig~~~~i~-~s~i~~~~~Ig~~~~i~ 413 (451)
.+.+++++.+++ ++.|++++.||++|.|++++.|+ .++||++|.||.++.+. ++.|++++.||.++.|.
T Consensus 47 ~a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~ 126 (146)
T PRK10191 47 AATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVGAGSVVL 126 (146)
T ss_pred CCEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEECCCCEEC
Confidence 344445554444 34455555555555555555553 25789999999888887 68888888888888888
Q ss_pred CeEECCCCEECCCcEE
Q 013012 414 GSVICSNAQLQERVAL 429 (451)
Q Consensus 414 ~~ii~~~~~i~~~~~i 429 (451)
+.+......+|..+.+
T Consensus 127 ~dv~~~~~v~G~pA~~ 142 (146)
T PRK10191 127 DSVPDNALVVGEKARV 142 (146)
T ss_pred CccCCCcEEEccCcEE
Confidence 7666655555555543
No 206
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.86 E-value=2.7e-08 Score=80.07 Aligned_cols=94 Identities=17% Similarity=0.207 Sum_probs=59.8
Q ss_pred eeCCCCeeCCCcEECC--CCEECCCCEECCCCEEece---EECCCCEECCCcEEeceEECCCCEECCCcEE-eCeEECCC
Q 013012 347 IIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRS---VIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI-QGSVICSN 420 (451)
Q Consensus 347 ~i~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~i~~s---vig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i-~~~ii~~~ 420 (451)
.|++++.|++++.|.+ ++.||++|.|+++|.|.++ .++.++.+........++|++++.||.++.+ .++.|+++
T Consensus 3 ~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~~ 82 (109)
T cd04647 3 SIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDG 82 (109)
T ss_pred EECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECCC
Confidence 3555555666555554 6667777777777666543 3344444434444567778888888888777 57778888
Q ss_pred CEECCCcEEcceEECCCCEEC
Q 013012 421 AQLQERVALKDCQVLSLSTSV 441 (451)
Q Consensus 421 ~~i~~~~~i~~~~ig~~~~i~ 441 (451)
+.|++++.+.. .+.+++++.
T Consensus 83 ~~i~~~~~v~~-~i~~~~i~~ 102 (109)
T cd04647 83 AVVGAGSVVTK-DVPPNSIVA 102 (109)
T ss_pred CEECCCCEEee-ECCCCCEEE
Confidence 88887777773 455665543
No 207
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.86 E-value=1.2e-08 Score=101.95 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=56.2
Q ss_pred EEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEEcceEECCCCEECCCCccCC
Q 013012 377 SVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVLSLSTSVFLSLSSN 448 (451)
Q Consensus 377 ~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~ 448 (451)
.+++++||++|.|+ +++|.+|+|+++|+||++|.|.+|+|++++.|++++.|.+|+|+++++|++++...+
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence 45567888888887 788888888888888888888888888888888888888888888888887775544
No 208
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.85 E-value=1.3e-08 Score=94.04 Aligned_cols=11 Identities=36% Similarity=0.573 Sum_probs=4.4
Q ss_pred EECCCCEECCC
Q 013012 382 VIGRHCRIGSN 392 (451)
Q Consensus 382 vig~~~~ig~~ 392 (451)
+||++|.||++
T Consensus 163 vIG~~a~IGdn 173 (273)
T PRK11132 163 VIGETAVIEND 173 (273)
T ss_pred EECCCCEECCC
Confidence 34444444443
No 209
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.84 E-value=1.1e-08 Score=102.75 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=54.9
Q ss_pred EEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEEcceEECCCCEECCCCcc
Q 013012 377 SVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVLSLSTSVFLSLS 446 (451)
Q Consensus 377 ~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~~~ig~~~~i~~~~~~ 446 (451)
.+.+|+||++|.| ++|.|.+|+|+++|.||++|.|.+|+|+++|.|++++.|.+|+|++++.|++++..
T Consensus 324 ~~~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i 392 (425)
T PRK00725 324 MAINSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVI 392 (425)
T ss_pred eEEeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCCEECCCCEE
Confidence 4567888888888 67888888888888888888888888888888888888887777777777776644
No 210
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.84 E-value=2.8e-08 Score=74.52 Aligned_cols=33 Identities=27% Similarity=0.532 Sum_probs=17.7
Q ss_pred ECCCCEECCCCEEec-eEECCCCEECCCcEEece
Q 013012 366 LGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNS 398 (451)
Q Consensus 366 i~~~~~i~~~~~i~~-svig~~~~ig~~~~i~~s 398 (451)
|++++.|++++.|.. ++||++|.|++++.|.++
T Consensus 3 ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~ 36 (78)
T cd00208 3 IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAA 36 (78)
T ss_pred ECCCeEECCCCEEeCcEEECCCCEECCCCEEEec
Confidence 344444444444443 566666666666666543
No 211
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.83 E-value=4.4e-09 Score=98.21 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=49.7
Q ss_pred eEEEEecCCCCCCCCCCCCCCcccccccC---CcchHHHHHHHHHHC--------CCcEEEEEecCchhhHHHHHhhhhh
Q 013012 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS--------NIKDLIVVVEGADAALRVGGWISAA 72 (451)
Q Consensus 4 ~avIlAgG~g~Rl~pl~~~~~pK~llpv~---gkpli~~~l~~l~~~--------gi~~iivv~~~~~~~~~i~~~~~~~ 72 (451)
-+|+||||.|||| +...||+|+|++ |+|+|++.++++... ++..+ ++++.. ..+.+.+|+.+.
T Consensus 2 a~viLaGG~GtRL----g~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~-imts~~-t~~~t~~~l~~~ 75 (266)
T cd04180 2 AVVLLAGGLGTRL----GKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQ-LMNSKY-THEKTQCYFEKI 75 (266)
T ss_pred EEEEECCCCcccc----CCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEE-EEcCch-hHHHHHHHHHHc
Confidence 5899999999999 778999999999 999999999999762 34444 444432 245677888764
Q ss_pred c
Q 013012 73 Y 73 (451)
Q Consensus 73 ~ 73 (451)
.
T Consensus 76 ~ 76 (266)
T cd04180 76 N 76 (266)
T ss_pred C
Confidence 3
No 212
>PLN02739 serine acetyltransferase
Probab=98.83 E-value=1.8e-08 Score=95.03 Aligned_cols=90 Identities=21% Similarity=0.253 Sum_probs=54.5
Q ss_pred CceeCCCCeeCCCcEEC--CCCEECCCCEECCCCEEeceEECCCCEECCCcE---EeceEECCCCEECCCcEE-eCeEEC
Q 013012 345 NNIIHPSAELGSKTTVG--PHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVK---VVNSVVMNHVTIGDGCSI-QGSVIC 418 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~---i~~s~i~~~~~Ig~~~~i-~~~ii~ 418 (451)
...|++++.||.++.|. .+++||++|+||++|.| ..+|+||.... -++++|+++|.||.|+.| +++.||
T Consensus 205 GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I-----~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IG 279 (355)
T PLN02739 205 GIDIHPAARIGKGILLDHGTGVVIGETAVIGDRVSI-----LHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIG 279 (355)
T ss_pred CcccCCCccccCceEEecCCceEECCCCEECCCCEE-----cCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEEC
Confidence 44566666666666663 35555555555555533 33333332110 024688888888888877 578888
Q ss_pred CCCEECCCcEEcceEECCCCEE
Q 013012 419 SNAQLQERVALKDCQVLSLSTS 440 (451)
Q Consensus 419 ~~~~i~~~~~i~~~~ig~~~~i 440 (451)
+++.||+|++|... |.+++++
T Consensus 280 d~aiIGAGSVV~kD-VP~~stv 300 (355)
T PLN02739 280 AGAMVAAGSLVLKD-VPSHSMV 300 (355)
T ss_pred CCCEECCCCEECCC-CCCCcEE
Confidence 88888888887642 4444444
No 213
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.82 E-value=1.6e-08 Score=96.45 Aligned_cols=82 Identities=23% Similarity=0.268 Sum_probs=67.1
Q ss_pred ECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEEcceEECCCCEECCCCc
Q 013012 366 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVLSLSTSVFLSL 445 (451)
Q Consensus 366 i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~~~ig~~~~i~~~~~ 445 (451)
.-+.+.+..++.+.+|.|+.+|.| ++ .|.+|+|+.+++|+++|.|++|+|.+++.||++|.|.+|+|..+++|++|.+
T Consensus 282 ~~pPak~~~~s~v~nSLv~~GciI-~G-~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~ 359 (393)
T COG0448 282 NLPPAKFVNDSEVSNSLVAGGCII-SG-TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVV 359 (393)
T ss_pred CCCCceEecCceEeeeeeeCCeEE-Ee-EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcE
Confidence 344555566666888999999999 44 8899999999999999999999999999999999998888888888888876
Q ss_pred cCCC
Q 013012 446 SSNE 449 (451)
Q Consensus 446 ~~~~ 449 (451)
..++
T Consensus 360 i~~~ 363 (393)
T COG0448 360 IGGD 363 (393)
T ss_pred EcCC
Confidence 5543
No 214
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.81 E-value=5.4e-08 Score=86.64 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=65.6
Q ss_pred CcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEEe---ceEECCCCEECCCcEEeC-------------------
Q 013012 357 KTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV---NSVVMNHVTIGDGCSIQG------------------- 414 (451)
Q Consensus 357 ~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~---~s~i~~~~~Ig~~~~i~~------------------- 414 (451)
+..+|+++.++.+|.+.... .....||++|.|++++.|. ++.|+++|.|++++.|.+
T Consensus 43 ~I~iG~~v~i~~~~ri~~~~-~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~ 121 (192)
T PRK09677 43 SINFGEGFTSGVGLRLDAFG-RGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPP 121 (192)
T ss_pred eEEECCceEECCCeEEEecC-CCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccCh
Confidence 34455555566655552210 0135889999999999886 688999999998887752
Q ss_pred ---------eEECCCCEECCCcEEc-ceEECCCCEECCCCccC
Q 013012 415 ---------SVICSNAQLQERVALK-DCQVLSLSTSVFLSLSS 447 (451)
Q Consensus 415 ---------~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~~~~ 447 (451)
++||+++.|+.++.|. +++||++++|++++...
T Consensus 122 ~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~ 164 (192)
T PRK09677 122 DMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVT 164 (192)
T ss_pred hhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEEC
Confidence 5789999999988887 58888888888888543
No 215
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.81 E-value=3.3e-09 Score=97.57 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=81.2
Q ss_pred CCeeCCCcEECCCCEECCCCEECCCCEEec-eEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEE
Q 013012 351 SAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVAL 429 (451)
Q Consensus 351 ~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~-svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i 429 (451)
+-.+.+++.+.+++.+.+-+.+|++|.|++ ++||.+|.|+++++|.+|+++.++.++..+.|..+++|.++.||.+++|
T Consensus 252 ~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~i 331 (371)
T KOG1322|consen 252 SPRLLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARI 331 (371)
T ss_pred CccccCCccccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEE
Confidence 334445566667777777778888888886 8999999999999999999999999999999999999999999999999
Q ss_pred cc-eEECCCCEECCCC
Q 013012 430 KD-CQVLSLSTSVFLS 444 (451)
Q Consensus 430 ~~-~~ig~~~~i~~~~ 444 (451)
.+ |+||.+++|....
T Consensus 332 d~~a~lG~nV~V~d~~ 347 (371)
T KOG1322|consen 332 DKNAVLGKNVIVADED 347 (371)
T ss_pred ecccEeccceEEeccc
Confidence 85 9999999987543
No 216
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.80 E-value=1.8e-08 Score=90.62 Aligned_cols=93 Identities=15% Similarity=0.097 Sum_probs=63.4
Q ss_pred CeeCCCcEECCCCEECCCCEECCCCEEe-ceEECCCCEECCCcEEe-ceEECCCCEECCCcEEe---------CeEECCC
Q 013012 352 AELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ---------GSVICSN 420 (451)
Q Consensus 352 ~~i~~~~~i~~~~~i~~~~~i~~~~~i~-~svig~~~~ig~~~~i~-~s~i~~~~~Ig~~~~i~---------~~ii~~~ 420 (451)
+.|.+++.+..+++|++|++|.+++.|. ++.++.+++|.-++.++ ..+|+.|++||.|+.|. -.+|++|
T Consensus 109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~Igdn 188 (271)
T COG2171 109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDN 188 (271)
T ss_pred eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCc
Confidence 4444555555555555555555555555 56788888887777777 46788888888888886 3578888
Q ss_pred CEECCCcEEc-ceEECCCCEECCCC
Q 013012 421 AQLQERVALK-DCQVLSLSTSVFLS 444 (451)
Q Consensus 421 ~~i~~~~~i~-~~~ig~~~~i~~~~ 444 (451)
|.||+++.+. ++.||+||+|.+|.
T Consensus 189 cliGAns~~veGV~vGdg~VV~aGv 213 (271)
T COG2171 189 CLIGANSEVVEGVIVGDGCVVAAGV 213 (271)
T ss_pred cEeccccceEeeeEeCCCcEEecce
Confidence 8888887443 56666666666665
No 217
>PLN02694 serine O-acetyltransferase
Probab=98.79 E-value=2.1e-08 Score=92.69 Aligned_cols=74 Identities=15% Similarity=0.219 Sum_probs=53.8
Q ss_pred cCCCceeCCCCeeCC--CcEECCCCEECCCCEECCCCEEe---------ceEECCCCEECCCcEE-eceEECCCCEECCC
Q 013012 342 SAQNNIIHPSAELGS--KTTVGPHCMLGEGSQMGDKCSVK---------RSVIGRHCRIGSNVKV-VNSVVMNHVTIGDG 409 (451)
Q Consensus 342 ~~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~i~~~~~i~---------~svig~~~~ig~~~~i-~~s~i~~~~~Ig~~ 409 (451)
+++.+.|++++.|.. +++||+++.||++|.|..++.++ +++||++|.||.++.| ++++|++++.||.+
T Consensus 163 I~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAg 242 (294)
T PLN02694 163 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAG 242 (294)
T ss_pred eCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCEECCC
Confidence 456667777777654 67777777777777777777764 4688888888888877 57777777777777
Q ss_pred cEEeCe
Q 013012 410 CSIQGS 415 (451)
Q Consensus 410 ~~i~~~ 415 (451)
+.|...
T Consensus 243 SVV~kd 248 (294)
T PLN02694 243 SVVLID 248 (294)
T ss_pred CEECCc
Confidence 777643
No 218
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.79 E-value=4.8e-08 Score=73.28 Aligned_cols=33 Identities=12% Similarity=0.313 Sum_probs=18.9
Q ss_pred eCCCCeeCCCcEECCCCEECCCCEECCCCEEec
Q 013012 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR 380 (451)
Q Consensus 348 i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~ 380 (451)
+++++.|+++++|++++.||++|.|++++.|.+
T Consensus 3 ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~ 35 (78)
T cd00208 3 IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGA 35 (78)
T ss_pred ECCCeEECCCCEEeCcEEECCCCEECCCCEEEe
Confidence 455555555555555566666666666655543
No 219
>PLN02357 serine acetyltransferase
Probab=98.77 E-value=3.9e-08 Score=93.54 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=69.1
Q ss_pred ccCCCceeCCCCeeCC--CcEECCCCEECCCCEECCCCEEe---------ceEECCCCEECCCcEE-eceEECCCCEECC
Q 013012 341 FSAQNNIIHPSAELGS--KTTVGPHCMLGEGSQMGDKCSVK---------RSVIGRHCRIGSNVKV-VNSVVMNHVTIGD 408 (451)
Q Consensus 341 ~~~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~i~~~~~i~---------~svig~~~~ig~~~~i-~~s~i~~~~~Ig~ 408 (451)
.+++.+.|++++.+.. +++||+++.||++|.|..++.|+ +++||++|.||.++.| ++.+|++++.||.
T Consensus 228 dI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IGA 307 (360)
T PLN02357 228 DIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGA 307 (360)
T ss_pred eeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEECC
Confidence 4556777777777764 56777777777777777777775 3789999999999888 5899999999999
Q ss_pred CcEEeCeEECCCCEECCCcEEc
Q 013012 409 GCSIQGSVICSNAQLQERVALK 430 (451)
Q Consensus 409 ~~~i~~~ii~~~~~i~~~~~i~ 430 (451)
++.|...+....+++|..+.+-
T Consensus 308 gSVV~~dVP~~~~v~G~PArvv 329 (360)
T PLN02357 308 GSVVLKDVPPRTTAVGNPARLI 329 (360)
T ss_pred CCEECcccCCCcEEECCCeEEE
Confidence 9999876666666666666543
No 220
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.77 E-value=6.1e-08 Score=86.35 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=19.8
Q ss_pred CCceeCCCCeeCCCcEE--CCCCEECCCCEECCCCEEe
Q 013012 344 QNNIIHPSAELGSKTTV--GPHCMLGEGSQMGDKCSVK 379 (451)
Q Consensus 344 ~~~~i~~~~~i~~~~~i--~~~~~i~~~~~i~~~~~i~ 379 (451)
.+..|+.++.|+.++.| ..++.||++|.|+++|.|.
T Consensus 74 ~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~ 111 (203)
T PRK09527 74 SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLS 111 (203)
T ss_pred CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEE
Confidence 44555555555555555 2235566666666666653
No 221
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.77 E-value=6.6e-08 Score=76.70 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=30.6
Q ss_pred eEECCCCEECCCcEEeceEECCCCEECCCcE---EeCeEECCCCEECCCcEEcc-eEECCCCEECCCC
Q 013012 381 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCS---IQGSVICSNAQLQERVALKD-CQVLSLSTSVFLS 444 (451)
Q Consensus 381 svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~---i~~~ii~~~~~i~~~~~i~~-~~ig~~~~i~~~~ 444 (451)
++|++++.||+++.| ++++.|++++. ++.++|++++.|+.++.+.. ++||+++.|++++
T Consensus 23 ~~ig~~~~Ig~~~~i-----~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~ 85 (101)
T cd03354 23 IVIGETAVIGDNCTI-----YQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGANA 85 (101)
T ss_pred EEECCCCEECCCCEE-----cCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEECCCC
Confidence 345555555555443 44444444443 45555555555555555553 5555555555544
No 222
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.4e-08 Score=90.45 Aligned_cols=70 Identities=13% Similarity=0.299 Sum_probs=55.2
Q ss_pred ECCCCEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEE
Q 013012 360 VGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVAL 429 (451)
Q Consensus 360 i~~~~~i~~~~~i~~~~~i~-~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i 429 (451)
|.++++|.+++.+.+.+.|+ |..||.++.||+|++|.+|+|.+++.|.+|+.+-+||||.++.||..+.+
T Consensus 285 IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRV 355 (407)
T KOG1460|consen 285 IIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARV 355 (407)
T ss_pred EEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeee
Confidence 33445555555555555554 34799999999999999999999999999999999999999999955544
No 223
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.76 E-value=6.5e-08 Score=77.81 Aligned_cols=64 Identities=19% Similarity=0.160 Sum_probs=31.8
Q ss_pred eEECCCCEECCCcEEece---EECCCCEECCCcEEeCeEECCCCEECCCcEEc-ceEECCCCEECCCC
Q 013012 381 SVIGRHCRIGSNVKVVNS---VVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVLSLSTSVFLS 444 (451)
Q Consensus 381 svig~~~~ig~~~~i~~s---~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~ 444 (451)
+.||++|.|+++|+|.++ .++.+..+.......+++||+++.|++++.+. ++.|++++.+++++
T Consensus 22 v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~~ 89 (109)
T cd04647 22 ITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGS 89 (109)
T ss_pred eEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECCCCEECCCC
Confidence 566666666666666533 22222222223333445555555555555553 34555555554444
No 224
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.76 E-value=9.6e-08 Score=76.57 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=20.2
Q ss_pred ceEECCCCEECCCcEEe-CeEECCCCEECCCcEEcc
Q 013012 397 NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD 431 (451)
Q Consensus 397 ~s~i~~~~~Ig~~~~i~-~~ii~~~~~i~~~~~i~~ 431 (451)
...|++++.||.++.|. ++.|++++.|++++.+.+
T Consensus 56 ~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~ 91 (107)
T cd05825 56 PIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVR 91 (107)
T ss_pred CEEECCCCEECCCCEECCCCEECCCCEECCCCEEeC
Confidence 34556666666665553 555666666666665554
No 225
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.71 E-value=6.5e-08 Score=83.19 Aligned_cols=82 Identities=24% Similarity=0.371 Sum_probs=54.5
Q ss_pred CceeCCCCeeCCCcEEC--CCCEECCCCEECCCCEEeceEECCCCEECCCcE---EeceEECCCCEECCCcEE-eCeEEC
Q 013012 345 NNIIHPSAELGSKTTVG--PHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVK---VVNSVVMNHVTIGDGCSI-QGSVIC 418 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~---i~~s~i~~~~~Ig~~~~i-~~~ii~ 418 (451)
..-|+|+|.||++..|. .+++||+.+.||++|.|. .++++|.... -++-.|+++|.||.|+.| ++-.||
T Consensus 67 gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~-----~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IG 141 (194)
T COG1045 67 GIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIY-----HGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIG 141 (194)
T ss_pred ceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEE-----cceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEEC
Confidence 45577888887777773 345666666666655433 2222222111 235688889999988876 777899
Q ss_pred CCCEECCCcEEcc
Q 013012 419 SNAQLQERVALKD 431 (451)
Q Consensus 419 ~~~~i~~~~~i~~ 431 (451)
+++.||++++|.+
T Consensus 142 d~akIGA~sVVlk 154 (194)
T COG1045 142 DNAKIGAGSVVLK 154 (194)
T ss_pred CCCEECCCceEcc
Confidence 9999999888875
No 226
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.70 E-value=9.8e-08 Score=82.48 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=6.4
Q ss_pred EECCCCEECCCcEEe
Q 013012 382 VIGRHCRIGSNVKVV 396 (451)
Q Consensus 382 vig~~~~ig~~~~i~ 396 (451)
+||++|.|++++.|+
T Consensus 89 ~IG~~~~I~~~v~ig 103 (162)
T TIGR01172 89 VIGDDVTIYHGVTLG 103 (162)
T ss_pred EECCCCEEcCCCEEC
Confidence 344444444444433
No 227
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.67 E-value=6.8e-08 Score=77.60 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=35.8
Q ss_pred CCEECCCCEECCCCEEe-------------ceEECCCCEECCCcEEeceEECCCCEECCCcEEe-CeEECCCCEECCCc
Q 013012 363 HCMLGEGSQMGDKCSVK-------------RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERV 427 (451)
Q Consensus 363 ~~~i~~~~~i~~~~~i~-------------~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~-~~ii~~~~~i~~~~ 427 (451)
++.+|..|+++.++.|+ +..||++++|+++|.+.-..|+..+++|.++.|+ +|++-+-+.|.+++
T Consensus 54 nVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrrCVlkdCc~ild~t 132 (184)
T KOG3121|consen 54 NVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDT 132 (184)
T ss_pred cceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccceeEcCceEhhhheeccCCc
Confidence 44555555555555553 2346777777777777666666666666665554 33333333333333
No 228
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.66 E-value=2.6e-06 Score=81.76 Aligned_cols=133 Identities=19% Similarity=0.233 Sum_probs=86.8
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccC---CcchHHHHHHHHHHCC-----------CcEEEEEecCchhhHHHHH
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELSN-----------IKDLIVVVEGADAALRVGG 67 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~---gkpli~~~l~~l~~~g-----------i~~iivv~~~~~~~~~i~~ 67 (451)
++.+||||||.|||| +...||+|+|++ |+|++++.++.+...+ .-.+++.++... .+.+.+
T Consensus 15 ~va~viLaGG~GTRL----g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t-~~~t~~ 89 (323)
T cd04193 15 KVAVLLLAGGQGTRL----GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEAT-HEETRK 89 (323)
T ss_pred CEEEEEECCCccccc----CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhH-hHHHHH
Confidence 467999999999999 788999999998 7999999999997742 124567776332 456778
Q ss_pred hhhhh--cc-CceeeEEEEcC---------------------CCCChHHHHHHH-----HhcC---CCCcEEEEcCCc-c
Q 013012 68 WISAA--YV-DRLHVEVATVP---------------------EDVGTAGALRAI-----AHHL---TAKDVLVVSGDL-V 114 (451)
Q Consensus 68 ~~~~~--~~-~~~~~~i~~~~---------------------~~~gt~~~l~~~-----~~~l---~~~~~lvl~~D~-i 114 (451)
|+.+. +. .+..+.+..|+ .+.|.++..... ++.+ .-+++.|.+.|. +
T Consensus 90 ~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L 169 (323)
T cd04193 90 FFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNIL 169 (323)
T ss_pred HHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccc
Confidence 77652 11 11123322221 134665544432 2222 235788888895 4
Q ss_pred CCCCchHHHHHHHhcCceEEEEEee
Q 013012 115 SDVPPGAVTAAHRRHDAVVTAMICS 139 (451)
Q Consensus 115 ~~~~~~~~l~~~~~~~~~~t~~~~~ 139 (451)
....-..++-.+.+.++++.+-+.+
T Consensus 170 ~~~~Dp~~lG~~~~~~~~~~~kvv~ 194 (323)
T cd04193 170 VKVADPVFIGFCISKGADVGAKVVR 194 (323)
T ss_pred ccccCHHHhHHHHHcCCceEEEEEE
Confidence 4444456788888888888775554
No 229
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.64 E-value=3.4e-07 Score=73.37 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=10.2
Q ss_pred eEECCCCEECCCcEEe
Q 013012 381 SVIGRHCRIGSNVKVV 396 (451)
Q Consensus 381 svig~~~~ig~~~~i~ 396 (451)
..||++|.|++++.|.
T Consensus 24 i~IG~~~~I~~~~~I~ 39 (107)
T cd05825 24 VTIGSDACISQGAYLC 39 (107)
T ss_pred eEECCCCEECCCeEee
Confidence 4666666666666664
No 230
>PLN02739 serine acetyltransferase
Probab=98.62 E-value=1.9e-07 Score=88.14 Aligned_cols=74 Identities=14% Similarity=0.223 Sum_probs=53.5
Q ss_pred cCCCceeCCCCeeC--CCcEECCCCEECCCCEECCCCEEe---------ceEECCCCEECCCcEEe-ceEECCCCEECCC
Q 013012 342 SAQNNIIHPSAELG--SKTTVGPHCMLGEGSQMGDKCSVK---------RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDG 409 (451)
Q Consensus 342 ~~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~i~~~~~i~---------~svig~~~~ig~~~~i~-~s~i~~~~~Ig~~ 409 (451)
+++.+.|++++.|. .+++||.++.||++|.|..++.|+ +.+||++|.||.++.|. ++.|++++.||.|
T Consensus 208 I~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiIGAG 287 (355)
T PLN02739 208 IHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMVAAG 287 (355)
T ss_pred cCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEECCC
Confidence 34566677777764 367777777777777777777774 36788888888888875 6788888888888
Q ss_pred cEEeCe
Q 013012 410 CSIQGS 415 (451)
Q Consensus 410 ~~i~~~ 415 (451)
+.|...
T Consensus 288 SVV~kD 293 (355)
T PLN02739 288 SLVLKD 293 (355)
T ss_pred CEECCC
Confidence 777643
No 231
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.62 E-value=2.5e-07 Score=80.77 Aligned_cols=69 Identities=17% Similarity=0.262 Sum_probs=35.5
Q ss_pred ceeCCCCeeCCCcEEC--CCCEECCCCEECCCCEEe-------------------ceEECCCCEECCCcEEe-ceEECCC
Q 013012 346 NIIHPSAELGSKTTVG--PHCMLGEGSQMGDKCSVK-------------------RSVIGRHCRIGSNVKVV-NSVVMNH 403 (451)
Q Consensus 346 ~~i~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~i~-------------------~svig~~~~ig~~~~i~-~s~i~~~ 403 (451)
..+++++.|+.++.+. .++.||++|.|+++|.|. +++||++|.||.+|.|. ++.|+++
T Consensus 63 i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~ 142 (169)
T cd03357 63 IHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGDN 142 (169)
T ss_pred CEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEECCC
Confidence 3445555555444442 344566666666666652 24555555555555543 4455555
Q ss_pred CEECCCcEEeC
Q 013012 404 VTIGDGCSIQG 414 (451)
Q Consensus 404 ~~Ig~~~~i~~ 414 (451)
+.||.++.|..
T Consensus 143 ~~VgagavV~~ 153 (169)
T cd03357 143 SVIGAGSVVTK 153 (169)
T ss_pred CEECCCCEEcc
Confidence 55555555443
No 232
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.60 E-value=3.5e-07 Score=83.39 Aligned_cols=114 Identities=23% Similarity=0.323 Sum_probs=76.0
Q ss_pred EEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCC-CcEEEEEecCchhhHHHHHhhhhhccCceeeEEEE
Q 013012 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (451)
Q Consensus 5 avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~g-i~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~ 83 (451)
|||+|.+.|+|+ ..|.|.+++|+|||+|+++++.+++ +++|+|.+... ++.+.+.++. ..+....
T Consensus 2 aiIpAR~gS~rl-------p~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~~----~i~~~~~~~g---~~v~~~~ 67 (217)
T PF02348_consen 2 AIIPARGGSKRL-------PGKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDDE----EIDDIAEEYG---AKVIFRR 67 (217)
T ss_dssp EEEEE-SSSSSS-------TTGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESSH----HHHHHHHHTT---SEEEE--
T ss_pred EEEecCCCCCCC-------CcchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCCH----HHHHHHHHcC---CeeEEcC
Confidence 899999999999 5699999999999999999999875 78999888744 4444444321 2232322
Q ss_pred cCCCCChHHHHHHHHhcC--CCCcEEEEcCC--ccCCCCchHHHHHHHhcCce
Q 013012 84 VPEDVGTAGALRAIAHHL--TAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAV 132 (451)
Q Consensus 84 ~~~~~gt~~~l~~~~~~l--~~~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~ 132 (451)
.+...++......+.... ..+.++.+.|| ++.+..+..+++.+.+...+
T Consensus 68 ~~~~~~~~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 68 GSLADDTDRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp TTSSSHHHHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred hhhcCCcccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 222234433332233322 22368888889 66677889999999888764
No 233
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.59 E-value=4.1e-07 Score=79.98 Aligned_cols=85 Identities=20% Similarity=0.346 Sum_probs=44.9
Q ss_pred CCceeCCCCeeCCCcEECCCC--EECCCCEECCCCEEec-------------eEECCCCEECCCcEEe-ceEECCCCEEC
Q 013012 344 QNNIIHPSAELGSKTTVGPHC--MLGEGSQMGDKCSVKR-------------SVIGRHCRIGSNVKVV-NSVVMNHVTIG 407 (451)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~~--~i~~~~~i~~~~~i~~-------------svig~~~~ig~~~~i~-~s~i~~~~~Ig 407 (451)
.+..++.++.++.++.++..+ .||++|.|+++|.|.. ..++..+.||++|+|+ +++|.++++||
T Consensus 72 ~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG 151 (183)
T PRK10092 72 YNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIG 151 (183)
T ss_pred CCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEEC
Confidence 455566666666655554433 5677777777766631 1233445555555553 45555555555
Q ss_pred CCcEEe-CeEECCCCEECCCcEEc
Q 013012 408 DGCSIQ-GSVICSNAQLQERVALK 430 (451)
Q Consensus 408 ~~~~i~-~~ii~~~~~i~~~~~i~ 430 (451)
++|.|+ +++|.++ |.+++++.
T Consensus 152 ~~~vIgagsvV~~d--i~~~~i~~ 173 (183)
T PRK10092 152 DNVVVASGAVVTKD--VPDNVVVG 173 (183)
T ss_pred CCCEECCCCEEccc--cCCCcEEE
Confidence 555553 4444443 34555444
No 234
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.58 E-value=5.8e-07 Score=78.23 Aligned_cols=123 Identities=13% Similarity=0.160 Sum_probs=82.0
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCC-CcEEEEEecCchhhHHHHHhhhhhccCceee
Q 013012 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (451)
Q Consensus 1 m~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~g-i~~iivv~~~~~~~~~i~~~~~~~~~~~~~~ 79 (451)
|+.-|+|+|.|.++|. ..|-+.+++|+|||.|+|+++.+++ |++|+|-+... .+-+.-..+. .
T Consensus 2 ~~~iAiIpAR~gSKgI-------~~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs~----~Il~~A~~yg-----a 65 (228)
T COG1083 2 MKNIAIIPARGGSKGI-------KNKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSE----EILEEAKKYG-----A 65 (228)
T ss_pred cceEEEEeccCCCCcC-------CccchHHhCCcchHHHHHHHHhcCCccceEEEcCCcH----HHHHHHHHhC-----c
Confidence 5678999999999998 5699999999999999999999988 67777766543 3333222221 1
Q ss_pred EE-EEcC-----CCCChHHHHHHHHhcCC-CCc-EEEEcCC--ccCCCCchHHHHHHHhcCceEEEEEee
Q 013012 80 EV-ATVP-----EDVGTAGALRAIAHHLT-AKD-VLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS 139 (451)
Q Consensus 80 ~i-~~~~-----~~~gt~~~l~~~~~~l~-~~~-~lvl~~D--~i~~~~~~~~l~~~~~~~~~~t~~~~~ 139 (451)
+. +.-+ +...|.+++..+.+... .++ ++.+.+- +....++++.++.+.+.+.+-.+.+++
T Consensus 66 k~~~~Rp~~LA~D~ast~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e 135 (228)
T COG1083 66 KVFLKRPKELASDRASTIDAALHALESFNIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVE 135 (228)
T ss_pred cccccCChhhccCchhHHHHHHHHHHHhccccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEee
Confidence 11 1111 22334445556655443 233 6666665 778889999999988877654444443
No 235
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.51 E-value=1.7e-07 Score=75.34 Aligned_cols=82 Identities=24% Similarity=0.387 Sum_probs=56.8
Q ss_pred CCCEECCCCEECCCCEEeceEECCCCEECCCcEEe-------------ceEECCCCEECCCcEEeC------eEECCCCE
Q 013012 362 PHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-------------NSVVMNHVTIGDGCSIQG------SVICSNAQ 422 (451)
Q Consensus 362 ~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~-------------~s~i~~~~~Ig~~~~i~~------~ii~~~~~ 422 (451)
+.+++.+++.|.. -+-+..+|++|.++++|.|+ ...||+++.|+++|++.- ..+|++++
T Consensus 38 GKtIv~~g~iIRG--DLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gknav 115 (184)
T KOG3121|consen 38 GKTIVEEGVIIRG--DLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAV 115 (184)
T ss_pred CcEEEeeCcEEec--ccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEecccee
Confidence 3444455554433 12356778888888888775 458999999999999863 34677777
Q ss_pred ECCCcEEcc-eEECCCCEECCCCc
Q 013012 423 LQERVALKD-CQVLSLSTSVFLSL 445 (451)
Q Consensus 423 i~~~~~i~~-~~ig~~~~i~~~~~ 445 (451)
||.+|++++ |.|-++++++|.+.
T Consensus 116 iGrrCVlkdCc~ild~tVlPpet~ 139 (184)
T KOG3121|consen 116 IGRRCVLKDCCRILDDTVLPPETL 139 (184)
T ss_pred EcCceEhhhheeccCCcccCcccc
Confidence 777777776 77888888777653
No 236
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.49 E-value=1.5e-05 Score=79.90 Aligned_cols=131 Identities=19% Similarity=0.271 Sum_probs=81.3
Q ss_pred CceEEEEecCCCCCCCCCCCCCCccccccc---CCcchHHHHHHHHHHC------------C-CcEEEEEecCchhhHHH
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPV---ANRPVLSYVLEQLELS------------N-IKDLIVVVEGADAALRV 65 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv---~gkpli~~~l~~l~~~------------g-i~~iivv~~~~~~~~~i 65 (451)
++.+||||||.|||| +...||+|+|| .|+|++++.++++... + .-.++|+++... .+.+
T Consensus 106 kvavViLAGG~GTRL----g~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t-~~~t 180 (482)
T PTZ00339 106 EVAVLILAGGLGTRL----GSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFN-HDQT 180 (482)
T ss_pred CeEEEEECCCCcCcC----CCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcch-HHHH
Confidence 478999999999999 67899999999 4899999999999764 1 234666666433 4567
Q ss_pred HHhhhhh--cc-CceeeEEEEc----------------C------CCCChHHHHHHHH-----hcC---CCCcEEEEcCC
Q 013012 66 GGWISAA--YV-DRLHVEVATV----------------P------EDVGTAGALRAIA-----HHL---TAKDVLVVSGD 112 (451)
Q Consensus 66 ~~~~~~~--~~-~~~~~~i~~~----------------~------~~~gt~~~l~~~~-----~~l---~~~~~lvl~~D 112 (451)
.+|+.+. +. .+..+.+..+ . .+.|.++..+... +.+ .-+++.|.+.|
T Consensus 181 ~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 260 (482)
T PTZ00339 181 RQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISID 260 (482)
T ss_pred HHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecC
Confidence 7777642 11 1111211111 0 1345555443322 222 13568888888
Q ss_pred cc-CCCCchHHHHHHHhcCc-eEEEEE
Q 013012 113 LV-SDVPPGAVTAAHRRHDA-VVTAMI 137 (451)
Q Consensus 113 ~i-~~~~~~~~l~~~~~~~~-~~t~~~ 137 (451)
.+ ....-..++-++.+.++ +++..+
T Consensus 261 N~L~k~~DP~flG~~~~~~~~~~~~kv 287 (482)
T PTZ00339 261 NILAKVLDPEFIGLASSFPAHDVLNKC 287 (482)
T ss_pred cccccccCHHHhHHHHHCCchhheeee
Confidence 44 44444557778777777 655443
No 237
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=98.47 E-value=1.2e-06 Score=76.69 Aligned_cols=120 Identities=19% Similarity=0.258 Sum_probs=82.8
Q ss_pred CCceEEEEecCC-CCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCC-CcEEEEEecCchhhHHHHHhhhhhccCcee
Q 013012 1 MDFQVVVLAGGT-SKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLH 78 (451)
Q Consensus 1 m~~~avIlAgG~-g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~g-i~~iivv~~~~~~~~~i~~~~~~~~~~~~~ 78 (451)
|.+-++|+.+.. |+|| ..|.|+|++++|||+++|+++.++. +++++|.++..+....++.++.+. +
T Consensus 1 ~~~I~~IiQARmgStRL-------pgKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~-----G 68 (241)
T COG1861 1 MSMILVIIQARMGSTRL-------PGKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH-----G 68 (241)
T ss_pred CCcEEEEeeecccCccC-------CcchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc-----C
Confidence 556666666654 5577 5699999999999999999999875 688999998665445666665442 2
Q ss_pred eEEEEcCCCCChHHHHHHHHhcCCCCcEEEEcCC--ccCCCCchHHHHHHHhcCceE
Q 013012 79 VEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVV 133 (451)
Q Consensus 79 ~~i~~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D--~i~~~~~~~~l~~~~~~~~~~ 133 (451)
+.+. ........+-...+.++...+.++=+.|| ++.+.-+...++.|.+.+++-
T Consensus 69 ~~vf-rGs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY 124 (241)
T COG1861 69 FYVF-RGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADY 124 (241)
T ss_pred eeEe-cCCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCcc
Confidence 2232 11112222333345666666678889999 666667788999999988764
No 238
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.44 E-value=7.9e-07 Score=76.57 Aligned_cols=88 Identities=15% Similarity=0.217 Sum_probs=64.3
Q ss_pred cCCCceeCCCCeeCC--CcEECCCCEECCCCEECCCCEEe---------ceEECCCCEECCCcEE-eceEECCCCEECCC
Q 013012 342 SAQNNIIHPSAELGS--KTTVGPHCMLGEGSQMGDKCSVK---------RSVIGRHCRIGSNVKV-VNSVVMNHVTIGDG 409 (451)
Q Consensus 342 ~~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~i~~~~~i~---------~svig~~~~ig~~~~i-~~s~i~~~~~Ig~~ 409 (451)
+++.+.|+++..|.. +.+|++.+.||++|.|..+++|+ +-+||+++.||.++.| ++-.|++++.||+|
T Consensus 70 Ihp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~akIGA~ 149 (194)
T COG1045 70 IHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAG 149 (194)
T ss_pred eCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCEECCC
Confidence 456677777777743 45677777777777777777774 2489999999999988 48889999999999
Q ss_pred cEEeCeEECCCCEECCCcEE
Q 013012 410 CSIQGSVICSNAQLQERVAL 429 (451)
Q Consensus 410 ~~i~~~ii~~~~~i~~~~~i 429 (451)
+++-..+-..-+++|-.+.+
T Consensus 150 sVVlkdVP~~~tvvGvPAri 169 (194)
T COG1045 150 SVVLKDVPPNATVVGVPARV 169 (194)
T ss_pred ceEccCCCCCceEecCcceE
Confidence 98876655544444544443
No 239
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.41 E-value=2.1e-07 Score=75.41 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=33.1
Q ss_pred ceeCCCCeeCCCcEECCCCEECCCCEECCCCEEe----ceEECCCCEECCCcEEec
Q 013012 346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVVN 397 (451)
Q Consensus 346 ~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~----~svig~~~~ig~~~~i~~ 397 (451)
..|.|+|.+-..+.|.+++.|+++|++.+.+++- +.+||+|+.|.+.+.|.+
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n 64 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRN 64 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHh
Confidence 3455666665555666666677777776666653 467777777777766653
No 240
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.29 E-value=5.3e-06 Score=70.14 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=32.8
Q ss_pred EeceEECCCCEECCCcEE-eCeEECCCCEECCCcEEcceEECCCCEEC
Q 013012 395 VVNSVVMNHVTIGDGCSI-QGSVICSNAQLQERVALKDCQVLSLSTSV 441 (451)
Q Consensus 395 i~~s~i~~~~~Ig~~~~i-~~~ii~~~~~i~~~~~i~~~~ig~~~~i~ 441 (451)
..+++|+++|.||.++.| .++.||++++|+++++|... +.+++++.
T Consensus 71 ~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~-v~~~~v~~ 117 (145)
T cd03349 71 KGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD-VPPYAIVG 117 (145)
T ss_pred cCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc-cCCCeEEE
Confidence 346788888888888877 47778888888888877753 45665553
No 241
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.26 E-value=8.4e-06 Score=68.92 Aligned_cols=31 Identities=3% Similarity=-0.040 Sum_probs=12.4
Q ss_pred CeEECCCCEECCCcEEc-ceEECCCCEECCCC
Q 013012 414 GSVICSNAQLQERVALK-DCQVLSLSTSVFLS 444 (451)
Q Consensus 414 ~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~ 444 (451)
+++||+++.|+.++.|. ++.||++++|++++
T Consensus 73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags 104 (145)
T cd03349 73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAGA 104 (145)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCCC
Confidence 33444444444444442 23444444444333
No 242
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.07 E-value=4.7e-06 Score=67.72 Aligned_cols=102 Identities=10% Similarity=0.097 Sum_probs=68.3
Q ss_pred CCceeCCCCeeCCCcEE---CCCCEECCCCEECCCCEEec--------------eEECCCCEECCCcEEeceEECCCCEE
Q 013012 344 QNNIIHPSAELGSKTTV---GPHCMLGEGSQMGDKCSVKR--------------SVIGRHCRIGSNVKVVNSVVMNHVTI 406 (451)
Q Consensus 344 ~~~~i~~~~~i~~~~~i---~~~~~i~~~~~i~~~~~i~~--------------svig~~~~ig~~~~i~~s~i~~~~~I 406 (451)
++..+++++.+++.+++ .++.+||+|+.|.+.+.|.+ -+||.+-...-+|...-..+|++..|
T Consensus 25 Gdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~NVi 104 (190)
T KOG4042|consen 25 GDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDRNVI 104 (190)
T ss_pred cceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcCcceE
Confidence 34555555555555444 25667888888887777643 36777777666776666677777777
Q ss_pred CCCcEEe-CeEECCCCEECCCcEEcc-eEECCCCEECCCCc
Q 013012 407 GDGCSIQ-GSVICSNAQLQERVALKD-CQVLSLSTSVFLSL 445 (451)
Q Consensus 407 g~~~~i~-~~ii~~~~~i~~~~~i~~-~~ig~~~~i~~~~~ 445 (451)
+..|.++ ++.+.++|.||++|.+.. -.+.++++|....-
T Consensus 105 eskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga~~ 145 (190)
T KOG4042|consen 105 ESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGATN 145 (190)
T ss_pred eeeeEecCCcEEcCCceeccceEEecccccCCcceEEcccc
Confidence 7777775 666777788888777764 66777777765543
No 243
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.02 E-value=1e-05 Score=70.57 Aligned_cols=81 Identities=22% Similarity=0.346 Sum_probs=50.0
Q ss_pred CceeCCCCeeCCCcEEC--CCCEECCCCEECCCCEEeceEECCCCEECC---CcEEeceEECCCCEECCCcEE-eCeEEC
Q 013012 345 NNIIHPSAELGSKTTVG--PHCMLGEGSQMGDKCSVKRSVIGRHCRIGS---NVKVVNSVVMNHVTIGDGCSI-QGSVIC 418 (451)
Q Consensus 345 ~~~i~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~i~~svig~~~~ig~---~~~i~~s~i~~~~~Ig~~~~i-~~~ii~ 418 (451)
.+-|||.+.||.+..+. -+++||+-++||.++.| .+++.+|. ++--++-.|++||.||.++.| ++.-||
T Consensus 148 gvdihpaa~ig~gilldhatgvvigeTAvvg~~vSi-----lH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IG 222 (269)
T KOG4750|consen 148 GVDIHPAAKIGKGILLDHATGVVIGETAVVGDNVSI-----LHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIG 222 (269)
T ss_pred cccccchhhcccceeeccccceeecceeEeccceee-----ecceeeccccccccccCCcccCCeEEccccEEeCCeeEC
Confidence 34467777777776652 34555555555554433 22222221 222235688888888888765 788888
Q ss_pred CCCEECCCcEEc
Q 013012 419 SNAQLQERVALK 430 (451)
Q Consensus 419 ~~~~i~~~~~i~ 430 (451)
++++|++|+++-
T Consensus 223 egavIaAGsvV~ 234 (269)
T KOG4750|consen 223 EGAVIAAGSVVL 234 (269)
T ss_pred CCcEEeccceEE
Confidence 888888888775
No 244
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.01 E-value=2.2e-05 Score=83.37 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=15.7
Q ss_pred ceEECCCCEECCCcEE-eCeEECCCCEECCCcEE
Q 013012 397 NSVVMNHVTIGDGCSI-QGSVICSNAQLQERVAL 429 (451)
Q Consensus 397 ~s~i~~~~~Ig~~~~i-~~~ii~~~~~i~~~~~i 429 (451)
+++|++++.||.+|.| .++.||+++.|++++.+
T Consensus 645 ~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~SvV 678 (695)
T TIGR02353 645 TVTIGDGATLGPGAIVLYGVVMGEGSVLGPDSLV 678 (695)
T ss_pred CeEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence 4455555555555544 34444444444444443
No 245
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=97.94 E-value=0.0015 Score=61.74 Aligned_cols=133 Identities=14% Similarity=0.147 Sum_probs=82.0
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccC-CcchHHHHHHHHHH----CCC-cEEEEEecCchhhHHHHHhhhhhccC
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL----SNI-KDLIVVVEGADAALRVGGWISAAYVD 75 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~-gkpli~~~l~~l~~----~gi-~~iivv~~~~~~~~~i~~~~~~~~~~ 75 (451)
++-+|+||||.|||| +.+.||.|+|+. |+++++..++++.. .+. -.++|.++..- .+...+++.++...
T Consensus 3 kvavl~LaGG~GTRL----G~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T-~~~T~~~l~~~~~~ 77 (300)
T cd00897 3 KLVVLKLNGGLGTSM----GCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNT-DEDTKKILKKYAGV 77 (300)
T ss_pred cEEEEEecCCccccc----CCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcc-hHHHHHHHHHcCCC
Confidence 356899999999999 788999999995 67999999999854 232 23566666443 34566666654211
Q ss_pred ceeeEEEEc--------------C----------CCCChHHHHHHH-----HhcC---CCCcEEEEcCCccCCCCchHHH
Q 013012 76 RLHVEVATV--------------P----------EDVGTAGALRAI-----AHHL---TAKDVLVVSGDLVSDVPPGAVT 123 (451)
Q Consensus 76 ~~~~~i~~~--------------~----------~~~gt~~~l~~~-----~~~l---~~~~~lvl~~D~i~~~~~~~~l 123 (451)
+..+.+..| + .+.|-++..... ++.+ .-+++.+.+.|.+....=..++
T Consensus 78 ~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~l 157 (300)
T cd00897 78 NVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRIL 157 (300)
T ss_pred ccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHH
Confidence 111111111 0 123444332222 2222 2357999999965544334588
Q ss_pred HHHHhcCceEEEEEee
Q 013012 124 AAHRRHDAVVTAMICS 139 (451)
Q Consensus 124 ~~~~~~~~~~t~~~~~ 139 (451)
.+|.++++++++=+.+
T Consensus 158 g~~~~~~~~~~~evv~ 173 (300)
T cd00897 158 NHMVDNKAEYIMEVTD 173 (300)
T ss_pred HHHHhcCCceEEEEee
Confidence 8888888887764443
No 246
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.88 E-value=6e-05 Score=80.11 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=32.6
Q ss_pred eEECCCCEECCCcEEec------eEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-ceEECCCCEECCCC
Q 013012 381 SVIGRHCRIGSNVKVVN------SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVLSLSTSVFLS 444 (451)
Q Consensus 381 svig~~~~ig~~~~i~~------s~i~~~~~Ig~~~~i~-~~ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~ 444 (451)
+.||++|.|+++|.|.. .+..++++||++|.|+ +|+|.++++||+++.|+ ++++-.|..+++++
T Consensus 617 v~IGd~~~I~~~~~i~~h~~~~~~~~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~SvV~~g~~vp~~s 688 (695)
T TIGR02353 617 VTIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDSLVMKGEEVPAHT 688 (695)
T ss_pred eEECCCCEECCCCEEEeccccccccccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcccCCCC
Confidence 35666666666666642 2334556666666554 44454555555444444 24444444444443
No 247
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.88 E-value=9.9e-05 Score=65.67 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=8.2
Q ss_pred eEECCCCEECCCcEEe
Q 013012 381 SVIGRHCRIGSNVKVV 396 (451)
Q Consensus 381 svig~~~~ig~~~~i~ 396 (451)
..||+++.+++++.|.
T Consensus 88 i~ig~~~~i~~~v~i~ 103 (190)
T COG0110 88 ITIGDNVVVGPNVTIY 103 (190)
T ss_pred eEECCCceECCCcEEe
Confidence 3455555555555553
No 248
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.87 E-value=4.9e-05 Score=66.93 Aligned_cols=94 Identities=14% Similarity=0.111 Sum_probs=62.4
Q ss_pred CCcccccccCC--cchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEcC-CCCChHHHHHHHHh
Q 013012 23 EVPKALLPVAN--RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVP-EDVGTAGALRAIAH 99 (451)
Q Consensus 23 ~~pK~llpv~g--kpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~-~~~gt~~~l~~~~~ 99 (451)
+.+|+|+++.| +|||+|+++.+. ..+++++|+++... .. . ...+.++... ...|+..++..+++
T Consensus 2 G~dK~ll~~~g~~~~ll~~~~~~l~-~~~~~iivv~~~~~---~~----~-----~~~~~~i~d~~~g~gpl~~~~~gl~ 68 (178)
T PRK00576 2 GRDKATLPLPGGTTTLVEHVVGIVG-QRCAPVFVMAAPGQ---PL----P-----ELPAPVLRDELRGLGPLPATGRGLR 68 (178)
T ss_pred CCCCEeeEeCCCCcCHHHHHHHHHh-hcCCEEEEECCCCc---cc----c-----cCCCCEeccCCCCCCcHHHHHHHHH
Confidence 46999999999 999999999876 45899999987431 11 0 1123343221 23566666665543
Q ss_pred cC---CCCcEEEEcCC--ccCCCCchHHHHHHHhc
Q 013012 100 HL---TAKDVLVVSGD--LVSDVPPGAVTAAHRRH 129 (451)
Q Consensus 100 ~l---~~~~~lvl~~D--~i~~~~~~~~l~~~~~~ 129 (451)
.. ..+.++|++|| ++....+..+++...+.
T Consensus 69 ~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~ 103 (178)
T PRK00576 69 AAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQT 103 (178)
T ss_pred HHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhcC
Confidence 22 35679999999 66666777777765443
No 249
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.72 E-value=6e-05 Score=65.96 Aligned_cols=30 Identities=13% Similarity=0.025 Sum_probs=15.3
Q ss_pred EECCCCEECCCcEEc-ceEECCCCEECCCCc
Q 013012 416 VICSNAQLQERVALK-DCQVLSLSTSVFLSL 445 (451)
Q Consensus 416 ii~~~~~i~~~~~i~-~~~ig~~~~i~~~~~ 445 (451)
.||+|+.||.++.|- +..||+|++|++||.
T Consensus 202 ~Igd~vliGaGvtILgnV~IGegavIaAGsv 232 (269)
T KOG4750|consen 202 KIGDNVLIGAGVTILGNVTIGEGAVIAAGSV 232 (269)
T ss_pred cccCCeEEccccEEeCCeeECCCcEEeccce
Confidence 344555555555433 355555555555553
No 250
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.66 E-value=0.00014 Score=63.89 Aligned_cols=75 Identities=21% Similarity=0.297 Sum_probs=34.1
Q ss_pred EECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-CeEECCCCEECCCcEEcceEECCCCE
Q 013012 365 MLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVLSLST 439 (451)
Q Consensus 365 ~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~-~s~i~~~~~Ig~~~~i~-~~ii~~~~~i~~~~~i~~~~ig~~~~ 439 (451)
++++...+|+++.|...+++.+|.|+.+|.+. |.+...+++||+++.|+ .-++...-.||+++.|.+..+..|-+
T Consensus 35 V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~Ieggfva~g~I 111 (277)
T COG4801 35 VVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVIIEGGFVAKGWI 111 (277)
T ss_pred eeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccceEEecCeeecceE
Confidence 34444444444444444445555555555553 34444445555555543 22333334444444444444444433
No 251
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=97.58 E-value=0.0094 Score=59.70 Aligned_cols=191 Identities=11% Similarity=0.105 Sum_probs=106.4
Q ss_pred ceEEEEecCCCCCCCCCCCCCCccccccc-CCcchHHHHHHHHHH----CCCc-EEEEEecCchhhHHHHHhhhhhccCc
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPV-ANRPVLSYVLEQLEL----SNIK-DLIVVVEGADAALRVGGWISAAYVDR 76 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv-~gkpli~~~l~~l~~----~gi~-~iivv~~~~~~~~~i~~~~~~~~~~~ 76 (451)
+-+|.||||.|||| +...||.++++ .|+++++..++++.. .|.. ..++.++..- .+...+++.++...+
T Consensus 80 ~avlkLnGGlGTrm----G~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T-~~~T~~~l~k~~~~~ 154 (469)
T PLN02474 80 LVVLKLNGGLGTTM----GCTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNT-HDDTQKIVEKYTNSN 154 (469)
T ss_pred EEEEEecCCccccc----CCCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCch-hHHHHHHHHHcCCCc
Confidence 56899999999999 78899999999 467999998888754 3432 3466665433 335566665532111
Q ss_pred eeeEEEEc----------------C--------CCCChHHH---HHHH--HhcC---CCCcEEEEcCCccCCCCchHHHH
Q 013012 77 LHVEVATV----------------P--------EDVGTAGA---LRAI--AHHL---TAKDVLVVSGDLVSDVPPGAVTA 124 (451)
Q Consensus 77 ~~~~i~~~----------------~--------~~~gt~~~---l~~~--~~~l---~~~~~lvl~~D~i~~~~~~~~l~ 124 (451)
.++....| . .+-|-++. |+.. ++.+ .-+++.|.+.|.+....=..++.
T Consensus 155 ~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~lg 234 (469)
T PLN02474 155 IEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKILN 234 (469)
T ss_pred cceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHHH
Confidence 12221111 0 12233333 3221 2222 23578999999655443345888
Q ss_pred HHHhcCceEEEEEeeeccCCCccCCCCCCcccCCCCCcccEEEecCCCc-eEEEeeccccccccccccHHHHhhcCeeEE
Q 013012 125 AHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQ-FLLHIATGAELEKDTRIRKSILRAVGQMDI 203 (451)
Q Consensus 125 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~-~l~~~~~~~~~ek~~~i~~~~~~~~~~~~~ 203 (451)
+|.++++++++=+......+ ..-|.+.. .+++ .+..+.+ ++........ -..
T Consensus 235 ~~~~~~~e~~~ev~~Kt~~d----------------~kgG~l~~-~dgk~~lvEysq---------vp~e~~~~f~-~~~ 287 (469)
T PLN02474 235 HLIQNKNEYCMEVTPKTLAD----------------VKGGTLIS-YEGKVQLLEIAQ---------VPDEHVNEFK-SIE 287 (469)
T ss_pred HHHhcCCceEEEEeecCCCC----------------CCccEEEE-ECCEEEEEEEec---------CCHHHHHhhc-ccc
Confidence 88888888766554322111 11144332 2232 2333332 2222111110 012
Q ss_pred ecCCccceEEeechHHHHHHHh
Q 013012 204 RADLMDAHMYAFNRSVLQEVLD 225 (451)
Q Consensus 204 ~s~l~~~giYi~~~~~l~~~~~ 225 (451)
...+.|+..+.|+-++|+.+++
T Consensus 288 kf~~fNtnn~w~~L~~l~~~~~ 309 (469)
T PLN02474 288 KFKIFNTNNLWVNLKAIKRLVE 309 (469)
T ss_pred cceeeeeeeEEEEHHHHHHHhh
Confidence 3457899999999999987764
No 252
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=97.57 E-value=0.0022 Score=60.90 Aligned_cols=131 Identities=14% Similarity=0.155 Sum_probs=79.6
Q ss_pred eEEEEecCCCCCCCCCCCCCCccccccc---CCcchHHHHHHHHHHCC---------CcEEEEEecCchhhHHHHHhhhh
Q 013012 4 QVVVLAGGTSKKLVPLVSKEVPKALLPV---ANRPVLSYVLEQLELSN---------IKDLIVVVEGADAALRVGGWISA 71 (451)
Q Consensus 4 ~avIlAgG~g~Rl~pl~~~~~pK~llpv---~gkpli~~~l~~l~~~g---------i~~iivv~~~~~~~~~i~~~~~~ 71 (451)
.+|+||||.|||| +...||.++|+ .|+++++..++++.... .-.++|.++... .+...+++.+
T Consensus 2 a~vllaGG~GTRL----G~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~T-h~~T~~~fe~ 76 (315)
T cd06424 2 VFVLVAGGLGERL----GYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDT-HSKTLKLLEE 76 (315)
T ss_pred EEEEecCCCcccc----CCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCch-hHHHHHHHHH
Confidence 4799999999999 88999999999 58999999999985532 134677776543 3466777764
Q ss_pred h--cc-CceeeEEEEc-----------------C-------CCCChHHHHHHHH-----hcC---CCCcEEEEcCC-ccC
Q 013012 72 A--YV-DRLHVEVATV-----------------P-------EDVGTAGALRAIA-----HHL---TAKDVLVVSGD-LVS 115 (451)
Q Consensus 72 ~--~~-~~~~~~i~~~-----------------~-------~~~gt~~~l~~~~-----~~l---~~~~~lvl~~D-~i~ 115 (451)
. +. ++.++.+..| + .+.|.++...... +.+ .-+++.+..-| .+.
T Consensus 77 n~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~ 156 (315)
T cd06424 77 NNYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALA 156 (315)
T ss_pred CCccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhh
Confidence 2 11 1111211110 1 1345554433322 111 12456666666 444
Q ss_pred CCCchHHHHHHHhcCceEEEEEee
Q 013012 116 DVPPGAVTAAHRRHDAVVTAMICS 139 (451)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~t~~~~~ 139 (451)
......++-.+..+++++...+.+
T Consensus 157 ~~adP~fiG~~~~~~~d~~~k~v~ 180 (315)
T cd06424 157 FKAIPAVLGVSATKSLDMNSLTVP 180 (315)
T ss_pred hccChhhEEEEecCCCceEeEEEe
Confidence 445556777777788887766554
No 253
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.56 E-value=0.00044 Score=61.45 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=16.1
Q ss_pred eEECCCCEECCCcEE-eCeEECCCCEECCCcEEc
Q 013012 398 SVVMNHVTIGDGCSI-QGSVICSNAQLQERVALK 430 (451)
Q Consensus 398 s~i~~~~~Ig~~~~i-~~~ii~~~~~i~~~~~i~ 430 (451)
++|+++|.||.++.| .+..||++++|++++++.
T Consensus 125 v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVt 158 (190)
T COG0110 125 VTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVT 158 (190)
T ss_pred eEECCCeEEcCccEECCCEEECCCcEEeeCCEEe
Confidence 455555555555444 244455555555555444
No 254
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.41 E-value=0.00082 Score=59.26 Aligned_cols=67 Identities=18% Similarity=0.382 Sum_probs=56.5
Q ss_pred EECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEE-eCeEECCCCEECCCcEEcc
Q 013012 365 MLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI-QGSVICSNAQLQERVALKD 431 (451)
Q Consensus 365 ~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i-~~~ii~~~~~i~~~~~i~~ 431 (451)
++...+.||+++.++..++|+.+.+|++++|.+.++..++.|+.+|.+ +|.+++.++.||+.+.|++
T Consensus 18 vv~gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~g 85 (277)
T COG4801 18 VVKGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKG 85 (277)
T ss_pred EEeccEEEcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeee
Confidence 444556677777888889999999999999999999999999999998 4777888888888887775
No 255
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.41 E-value=0.0085 Score=60.38 Aligned_cols=131 Identities=14% Similarity=0.177 Sum_probs=81.5
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccC---CcchHHHHHHHHHHC--------------CC-cEEEEEecCchhhHH
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS--------------NI-KDLIVVVEGADAALR 64 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~---gkpli~~~l~~l~~~--------------gi-~~iivv~~~~~~~~~ 64 (451)
+-+|+||||.|||| +...||.|++|+ ++++++...+++... +. -.++|.++... .+.
T Consensus 117 vavvlLAGGqGTRL----G~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T-~~~ 191 (493)
T PLN02435 117 LAVVLLSGGQGTRL----GSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFT-DEA 191 (493)
T ss_pred EEEEEeCCCccccc----CCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcch-hHH
Confidence 45789999999999 888999999874 899999999986431 11 23577776443 346
Q ss_pred HHHhhhhh--cc-CceeeEEEEcC---------------------CCCChHHHHHHH-----HhcC---CCCcEEEEcCC
Q 013012 65 VGGWISAA--YV-DRLHVEVATVP---------------------EDVGTAGALRAI-----AHHL---TAKDVLVVSGD 112 (451)
Q Consensus 65 i~~~~~~~--~~-~~~~~~i~~~~---------------------~~~gt~~~l~~~-----~~~l---~~~~~lvl~~D 112 (451)
..+|+.+. |. .+.++.+..+. .+.|.++..... ++.+ .-+++.+.+.|
T Consensus 192 T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 271 (493)
T PLN02435 192 TRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVD 271 (493)
T ss_pred HHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecc
Confidence 67777642 21 12223332221 134665544332 2222 13467788888
Q ss_pred c-cCCCCchHHHHHHHhcCceEEEEEe
Q 013012 113 L-VSDVPPGAVTAAHRRHDAVVTAMIC 138 (451)
Q Consensus 113 ~-i~~~~~~~~l~~~~~~~~~~t~~~~ 138 (451)
. +....-..++-.+...+.++.+-+.
T Consensus 272 N~L~~~~DP~flG~~~~~~~d~~~kVv 298 (493)
T PLN02435 272 NALVRVADPTFLGYFIDKGVASAAKVV 298 (493)
T ss_pred cccccccCHHHHHHHHhcCCceEEEee
Confidence 5 4444445688888888888776544
No 256
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.40 E-value=0.00022 Score=43.75 Aligned_cols=12 Identities=50% Similarity=0.955 Sum_probs=3.4
Q ss_pred ECCCCEECCCcE
Q 013012 383 IGRHCRIGSNVK 394 (451)
Q Consensus 383 ig~~~~ig~~~~ 394 (451)
||++|.||++|.
T Consensus 4 IG~~~~ig~~~~ 15 (34)
T PF14602_consen 4 IGDNCFIGANST 15 (34)
T ss_dssp E-TTEEE-TT-E
T ss_pred ECCCEEECcccc
Confidence 333333333333
No 257
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.40 E-value=0.00012 Score=45.65 Aligned_cols=31 Identities=35% Similarity=0.547 Sum_probs=13.4
Q ss_pred EECCCCEECCCcEEe-ceEECCCCEECCCcEE
Q 013012 382 VIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSI 412 (451)
Q Consensus 382 vig~~~~ig~~~~i~-~s~i~~~~~Ig~~~~i 412 (451)
+||++|.|++++.|. ++.|++++.|++++.|
T Consensus 3 ~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 3 VIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred EEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 444444444444433 3444444444444444
No 258
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.31 E-value=0.00029 Score=43.21 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=7.6
Q ss_pred eEECCCCEECCCcEE
Q 013012 381 SVIGRHCRIGSNVKV 395 (451)
Q Consensus 381 svig~~~~ig~~~~i 395 (451)
..||++|.|++++.|
T Consensus 18 i~igd~~~i~~g~~I 32 (34)
T PF14602_consen 18 ITIGDGVIIGAGVVI 32 (34)
T ss_dssp SEE-TTEEE-TTEEE
T ss_pred CEEcCCCEECCCCEE
Confidence 456666666666554
No 259
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=97.24 E-value=0.013 Score=58.31 Aligned_cols=134 Identities=19% Similarity=0.217 Sum_probs=80.5
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccC-CcchHHHHHHHHHH----CCC-cEEEEEecCchhhHHHHHhhhhhccC
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL----SNI-KDLIVVVEGADAALRVGGWISAAYVD 75 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~-gkpli~~~l~~l~~----~gi-~~iivv~~~~~~~~~i~~~~~~~~~~ 75 (451)
++.+|+||||.|||| +...||.++||. |+++++..++++.. .+. -.++|.++... .+...+++.+++..
T Consensus 56 kvavl~LaGGlGTrl----G~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T-~~~T~~~l~kyfg~ 130 (420)
T PF01704_consen 56 KVAVLKLAGGLGTRL----GCSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNT-HEDTRKFLEKYFGL 130 (420)
T ss_dssp CEEEEEEEESBSGCC----TESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTT-HHHHHHHHHHGCGS
T ss_pred CEEEEEEcCcccCcc----CCCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCccc-HHHHHHHHHHhcCC
Confidence 356789999999999 788999999995 56899988888754 232 34677776543 34677777764322
Q ss_pred ceeeEEEEc----------------CC----------CCChHHHHHHH-----HhcC---CCCcEEEEcCCccCCCCchH
Q 013012 76 RLHVEVATV----------------PE----------DVGTAGALRAI-----AHHL---TAKDVLVVSGDLVSDVPPGA 121 (451)
Q Consensus 76 ~~~~~i~~~----------------~~----------~~gt~~~l~~~-----~~~l---~~~~~lvl~~D~i~~~~~~~ 121 (451)
...+.+..| +. +-|-++..... ++.+ ..+++.|.+.|.+....=..
T Consensus 131 ~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~ 210 (420)
T PF01704_consen 131 DVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPV 210 (420)
T ss_dssp SCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HH
T ss_pred CcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHH
Confidence 112211111 00 12554433222 2221 24679999999755544445
Q ss_pred HHHHHHhcCceEEEEEeee
Q 013012 122 VTAAHRRHDAVVTAMICSV 140 (451)
Q Consensus 122 ~l~~~~~~~~~~t~~~~~~ 140 (451)
++.++.+.++++.+-+.+.
T Consensus 211 ~lG~~~~~~~~~~~evv~K 229 (420)
T PF01704_consen 211 FLGYMIEKNADFGMEVVPK 229 (420)
T ss_dssp HHHHHHHTT-SEEEEEEE-
T ss_pred HHHHHHhccchhheeeeec
Confidence 8888888888887666553
No 260
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.035 Score=54.90 Aligned_cols=131 Identities=18% Similarity=0.252 Sum_probs=75.8
Q ss_pred CceEEEEecCCCCCCCCCCCCCCcccccccC-CcchHHHHHHHHHH----CCCc-EEEEEecCchhhHHHHHhhh-hhcc
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL----SNIK-DLIVVVEGADAALRVGGWIS-AAYV 74 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv~-gkpli~~~l~~l~~----~gi~-~iivv~~~~~~~~~i~~~~~-~~~~ 74 (451)
++-+|+||||.|+|| +...||.+++|. |+++++.+.+.+.. .+++ ..++.++.. .. ...++.. ..|.
T Consensus 105 klAvl~LaGGqGtrl----G~~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~n-t~-~t~s~f~~~~Y~ 178 (472)
T COG4284 105 KLAVLKLAGGQGTRL----GCDGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLN-TE-ETDSYFKSNDYF 178 (472)
T ss_pred ceEEEEecCCccccc----ccCCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCC-cH-HHHHHHhhhhhc
Confidence 356899999999999 788999999999 88999998887744 3432 355555522 11 2222222 1111
Q ss_pred --CceeeEEEEc------------------CC-----CCChH---HHHHH--HHhcC---CCCcEEEEcCCcc-CCCCch
Q 013012 75 --DRLHVEVATV------------------PE-----DVGTA---GALRA--IAHHL---TAKDVLVVSGDLV-SDVPPG 120 (451)
Q Consensus 75 --~~~~~~i~~~------------------~~-----~~gt~---~~l~~--~~~~l---~~~~~lvl~~D~i-~~~~~~ 120 (451)
++.++....| +. +.|.+ .+|.. ..+.+ ..+.+.|.+.|.+ ...| .
T Consensus 179 ~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD-~ 257 (472)
T COG4284 179 GLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVD-L 257 (472)
T ss_pred CCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccC-H
Confidence 1211211111 00 23443 34443 12222 2457889999953 3344 3
Q ss_pred HHHHHHHhcCceEEEEEee
Q 013012 121 AVTAAHRRHDAVVTAMICS 139 (451)
Q Consensus 121 ~~l~~~~~~~~~~t~~~~~ 139 (451)
.++.++..++...++=+..
T Consensus 258 ~~lg~~~~~~~e~~~e~t~ 276 (472)
T COG4284 258 KFLGFMAETNYEYLMETTD 276 (472)
T ss_pred HHHHHHHhcCcceeEEEee
Confidence 4778888888887665543
No 261
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=96.93 E-value=0.0031 Score=56.30 Aligned_cols=84 Identities=21% Similarity=0.174 Sum_probs=60.5
Q ss_pred cchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcCCC--CcEEEEcC
Q 013012 34 RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA--KDVLVVSG 111 (451)
Q Consensus 34 kpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l~~--~~~lvl~~ 111 (451)
+|||+|+++.+...++.+++++++.. .+..+... .++.++..+. .|...+++.+.+.+.. +.++++.|
T Consensus 30 ~~ll~~~l~~l~~~~~~~vvvv~~~~----~~~~~~~~-----~~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~~ 99 (195)
T TIGR03552 30 LAMLRDVITALRGAGAGAVLVVSPDP----ALLEAARN-----LGAPVLRDPG-PGLNNALNAALAEAREPGGAVLILMA 99 (195)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCH----HHHHHHHh-----cCCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEeC
Confidence 69999999999998878888887632 23333221 2355554433 4999999999876643 36999999
Q ss_pred C--ccCCCCchHHHHHHH
Q 013012 112 D--LVSDVPPGAVTAAHR 127 (451)
Q Consensus 112 D--~i~~~~~~~~l~~~~ 127 (451)
| ++...++..+++...
T Consensus 100 D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 100 DLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CCCCCCHHHHHHHHHhcc
Confidence 9 677778888888664
No 262
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=96.87 E-value=0.0065 Score=65.94 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=48.0
Q ss_pred cEEEEcCCccCCC--CchHHHHHHHhcCceEEEEEeeeccCCCccCCCCCCcccCCCCCcccEEEecCCC-ceEEEeecc
Q 013012 105 DVLVVSGDLVSDV--PPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTK-QFLLHIATG 181 (451)
Q Consensus 105 ~~lvl~~D~i~~~--~~~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~-~~l~~~~~~ 181 (451)
.++|..||.+... .+.+ -.++++..+....+. + -.+++|+++.|.++ ..+.++-.+
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~---~------------~~~~HGVfv~~~~~~~~~~~~LqK 212 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDP---S------------LATNHGVFVSSRKSPERLDFMLQK 212 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccCh---h------------hccCceEEEeCCCChHHHHHHhcC
Confidence 5999999943332 2222 123455554443322 1 14577999988873 223333222
Q ss_pred ccccccccccHHHHhhcCeeEEecCCccceEEeechHHHHHHHh
Q 013012 182 AELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (451)
Q Consensus 182 ~~~ek~~~i~~~~~~~~~~~~~~s~l~~~giYi~~~~~l~~~~~ 225 (451)
+.+|+- ..+. .-..-+.|+|+|+|+.+..+.++.
T Consensus 213 ps~eel----~a~~------~~~~~l~D~g~~~~~~~a~~~L~~ 246 (974)
T PRK13412 213 PSLEEL----GGLS------KTHLFLMDIGIWLLSDRAVELLMK 246 (974)
T ss_pred CCHHHH----Hhhh------cCCeEEEeeeEEEEChHHHHHHHH
Confidence 222221 1111 112348899999999988876653
No 263
>PLN02830 UDP-sugar pyrophosphorylase
Probab=96.48 E-value=0.059 Score=56.11 Aligned_cols=134 Identities=14% Similarity=0.129 Sum_probs=82.2
Q ss_pred CceEEEEecCCCCCCCCCCCCCCccccccc---CCcchHHHHHHHHHHC-----------C-CcEEEEEecCchhhHHHH
Q 013012 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPV---ANRPVLSYVLEQLELS-----------N-IKDLIVVVEGADAALRVG 66 (451)
Q Consensus 2 ~~~avIlAgG~g~Rl~pl~~~~~pK~llpv---~gkpli~~~l~~l~~~-----------g-i~~iivv~~~~~~~~~i~ 66 (451)
++-+|+||||.|+|| +...||.++|+ .|+++++..++++... + .-.++|.++..- .+...
T Consensus 128 kvavllLaGGlGTRL----G~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T-~~~T~ 202 (615)
T PLN02830 128 NAAFVLVAGGLGERL----GYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDT-HARTL 202 (615)
T ss_pred cEEEEEecCCccccc----CCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcch-hHHHH
Confidence 356799999999999 78899999997 4899999999997543 1 124677776543 34566
Q ss_pred Hhhhhh--cc-CceeeEEEEc----------------C--------CCCChHHHHHHH-----HhcC---CCCcEEEEcC
Q 013012 67 GWISAA--YV-DRLHVEVATV----------------P--------EDVGTAGALRAI-----AHHL---TAKDVLVVSG 111 (451)
Q Consensus 67 ~~~~~~--~~-~~~~~~i~~~----------------~--------~~~gt~~~l~~~-----~~~l---~~~~~lvl~~ 111 (451)
+++.++ |. .+.++.+..| . .+.|-++..+.. ++.+ .-+++.+...
T Consensus 203 ~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~v 282 (615)
T PLN02830 203 KLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQD 282 (615)
T ss_pred HHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEec
Confidence 777652 11 1112222111 1 123444332222 1222 1356778888
Q ss_pred Cc-cCCCCchHHHHHHHhcCceEEEEEeee
Q 013012 112 DL-VSDVPPGAVTAAHRRHDAVVTAMICSV 140 (451)
Q Consensus 112 D~-i~~~~~~~~l~~~~~~~~~~t~~~~~~ 140 (451)
|. +.....-.++-.+..+++++...+.+.
T Consensus 283 DN~L~~~Adp~flG~~~~~~~d~~~kvv~K 312 (615)
T PLN02830 283 TNGLVFKAIPAALGVSATKGFDMNSLAVPR 312 (615)
T ss_pred cchhhhcccHHHhHHHHhcCCceEEEEEEC
Confidence 83 333334778899999988887766643
No 264
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.78 E-value=0.15 Score=42.14 Aligned_cols=96 Identities=21% Similarity=0.124 Sum_probs=62.2
Q ss_pred cccCCc-chHHHHHHHHHHCC--CcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcCCCCc
Q 013012 29 LPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD 105 (451)
Q Consensus 29 lpv~gk-pli~~~l~~l~~~g--i~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l~~~~ 105 (451)
+|..|+ +++.++++.+.+.+ ..+++++.+... +.....+.+.................|.+.++..+.+....+.
T Consensus 3 i~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ 80 (156)
T cd00761 3 IPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGST--DGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAARGEY 80 (156)
T ss_pred EeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCC--ccHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHhcCCE
Confidence 455554 99999999999887 778888876432 2233333322111122444455667899999988888876677
Q ss_pred EEEEcCCccCCCC-chHHHHHH
Q 013012 106 VLVVSGDLVSDVP-PGAVTAAH 126 (451)
Q Consensus 106 ~lvl~~D~i~~~~-~~~~l~~~ 126 (451)
++++.+|.+...+ +..++..+
T Consensus 81 v~~~d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 81 ILFLDADDLLLPDWLERLVAEL 102 (156)
T ss_pred EEEECCCCccCccHHHHHHHHH
Confidence 9999999666555 44443433
No 265
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=95.57 E-value=0.036 Score=55.40 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=33.0
Q ss_pred EECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECC
Q 013012 371 QMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICS 419 (451)
Q Consensus 371 ~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~ 419 (451)
.+.+++.|-+|+|..++.||+++.|.+|.|..++.||++|.|.++-+..
T Consensus 275 ~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~ 323 (414)
T PF07959_consen 275 DSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINS 323 (414)
T ss_pred ccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCcccc
Confidence 3445556667777777777777777777777777777777776654443
No 266
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=95.39 E-value=0.034 Score=55.60 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=33.8
Q ss_pred eCCCcEECCCCEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCC
Q 013012 354 LGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNH 403 (451)
Q Consensus 354 i~~~~~i~~~~~i~~~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~ 403 (451)
+.+++.| -++++..++.+++++.|++|.|+.++.||++|.|.++-+.+.
T Consensus 276 ~~~~~~V-inSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~~ 324 (414)
T PF07959_consen 276 SEASSCV-INSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINSW 324 (414)
T ss_pred cCCCeeE-EEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCccccc
Confidence 3444444 467777777788777778888888888888777776655443
No 267
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=94.98 E-value=0.19 Score=42.44 Aligned_cols=109 Identities=18% Similarity=0.179 Sum_probs=70.8
Q ss_pred ccccCCc-chHHHHHHHHHHC--CCcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcCCCC
Q 013012 28 LLPVANR-PVLSYVLEQLELS--NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK 104 (451)
Q Consensus 28 llpv~gk-pli~~~l~~l~~~--gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l~~~ 104 (451)
.+|.-|+ ..|..+|+.+.+. ...+++|+-+.. .+...+.+.++......+.++..++..|.+.++..+.+....+
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s--~d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~ 80 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGS--TDETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAKGE 80 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS---SSSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH--SS
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEecccc--cccccccccccccccccccccccccccccccccccccccccee
Confidence 3455555 8889999988765 355666665533 1223333333322234578888887889999999999888777
Q ss_pred cEEEEcCC-ccCCCCchHHHHHHHhcCceEEEEEe
Q 013012 105 DVLVVSGD-LVSDVPPGAVTAAHRRHDAVVTAMIC 138 (451)
Q Consensus 105 ~~lvl~~D-~i~~~~~~~~l~~~~~~~~~~t~~~~ 138 (451)
.++++..| .+.+..+..+++.+.+.+.++.+...
T Consensus 81 ~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 81 YILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp EEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred EEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 89999999 44555688899998887666544433
No 268
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=91.18 E-value=1.6 Score=37.77 Aligned_cols=104 Identities=18% Similarity=0.137 Sum_probs=63.6
Q ss_pred cccCCc-chHHHHHHHHHHC----CCcEEEEEecCch--hhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcC
Q 013012 29 LPVANR-PVLSYVLEQLELS----NIKDLIVVVEGAD--AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL 101 (451)
Q Consensus 29 lpv~gk-pli~~~l~~l~~~----gi~~iivv~~~~~--~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l 101 (451)
+|.-+. ..|..+|+.+.+. ...+++|+-+... ..+.++.+..+. ..+.++..+...|.+.++..+.+..
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~----~~~~~~~~~~n~G~~~a~n~g~~~a 78 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARV----PRVRVIRLSRNFGKGAAVRAGFKAA 78 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhC----CCeEEEEccCCCCccHHHHHHHHHh
Confidence 344444 5677888888765 2566666654321 112233332211 1245666667789999998888877
Q ss_pred CCCcEEEEcCC-ccCCCCchHHHHHHHhcCceEEEE
Q 013012 102 TAKDVLVVSGD-LVSDVPPGAVTAAHRRHDAVVTAM 136 (451)
Q Consensus 102 ~~~~~lvl~~D-~i~~~~~~~~l~~~~~~~~~~t~~ 136 (451)
..+.++++.+| .+.+..+..++....+.+.++.+.
T Consensus 79 ~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 114 (185)
T cd04179 79 RGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIG 114 (185)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 66779999999 455555788888755555554433
No 269
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=91.04 E-value=2.9 Score=36.82 Aligned_cols=100 Identities=16% Similarity=0.139 Sum_probs=62.2
Q ss_pred ccccCCcc---hHHHHHHHHHHCC--CcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcCC
Q 013012 28 LLPVANRP---VLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT 102 (451)
Q Consensus 28 llpv~gkp---li~~~l~~l~~~g--i~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l~ 102 (451)
++|+.|+. .|..+|+.+.... ..+++|+-.... .+...+.+..+. .+.++.++..+...|.+.+...+.....
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss-~d~t~~~~~~~~-~~~~i~~i~~~~n~G~~~a~N~g~~~a~ 80 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPV-TQSLNEVLEEFK-RKLPLKVVPLEKNRGLGKALNEGLKHCT 80 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCC-chhHHHHHHHHH-hcCCeEEEEcCccccHHHHHHHHHHhcC
Confidence 45666653 8999999997754 255665544221 122223232221 1223666665667899999888888776
Q ss_pred CCcEEEEcCC-ccCCCCchHHHHHHHhc
Q 013012 103 AKDVLVVSGD-LVSDVPPGAVTAAHRRH 129 (451)
Q Consensus 103 ~~~~lvl~~D-~i~~~~~~~~l~~~~~~ 129 (451)
.+.++++.+| .+.+..+..+++...++
T Consensus 81 gd~i~~lD~Dd~~~~~~l~~~~~~~~~~ 108 (201)
T cd04195 81 YDWVARMDTDDISLPDRFEKQLDFIEKN 108 (201)
T ss_pred CCEEEEeCCccccCcHHHHHHHHHHHhC
Confidence 6778888888 55555677777776543
No 270
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=90.75 E-value=3.5 Score=34.61 Aligned_cols=96 Identities=16% Similarity=0.090 Sum_probs=60.8
Q ss_pred cccCCc-chHHHHHHHHHHCC--CcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcCCCCc
Q 013012 29 LPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD 105 (451)
Q Consensus 29 lpv~gk-pli~~~l~~l~~~g--i~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l~~~~ 105 (451)
+|.-|+ ..+..+++.+.+.. ..+++|+..... +...+.+.+... .+.++..++..|.+.++..+.+....+.
T Consensus 3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~--~~~~~~~~~~~~---~~~~~~~~~~~g~~~a~n~~~~~~~~~~ 77 (166)
T cd04186 3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNAST--DGSVELLRELFP---EVRLIRNGENLGFGAGNNQGIREAKGDY 77 (166)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCC--chHHHHHHHhCC---CeEEEecCCCcChHHHhhHHHhhCCCCE
Confidence 454454 88999999997753 456666665322 122333333221 3566656677899999998988886667
Q ss_pred EEEEcCCcc-CCCCchHHHHHHHhc
Q 013012 106 VLVVSGDLV-SDVPPGAVTAAHRRH 129 (451)
Q Consensus 106 ~lvl~~D~i-~~~~~~~~l~~~~~~ 129 (451)
++++..|.. .+..+..+++...+.
T Consensus 78 i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 78 VLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred EEEECCCcEECccHHHHHHHHHHhC
Confidence 888888844 444566776655443
No 271
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=88.60 E-value=6.9 Score=35.81 Aligned_cols=104 Identities=20% Similarity=0.232 Sum_probs=64.9
Q ss_pred CCCCcc--cccccCCc-chHHHHHHHHHHCCC----cEEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCChHHH
Q 013012 21 SKEVPK--ALLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGA 93 (451)
Q Consensus 21 ~~~~pK--~llpv~gk-pli~~~l~~l~~~gi----~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~ 93 (451)
....|+ .++|..|. ..|..+|+.+..... -+++|+..... +...+.+.+.. .. .+.++..+...|-+.+
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~--d~t~~~~~~~~-~~-~v~~i~~~~~~g~~~a 100 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGST--DGTAEIAREYA-DK-GVKLLRFPERRGKAAA 100 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCC--ccHHHHHHHHh-hC-cEEEEEcCCCCChHHH
Confidence 344454 55676666 788888888866532 25666654321 12223333221 11 3666666667898899
Q ss_pred HHHHHhcCCCCcEEEEcCCccC-CCCchHHHHHHHh
Q 013012 94 LRAIAHHLTAKDVLVVSGDLVS-DVPPGAVTAAHRR 128 (451)
Q Consensus 94 l~~~~~~l~~~~~lvl~~D~i~-~~~~~~~l~~~~~ 128 (451)
+..+.+....+.++++.+|.+. +..+..+++...+
T Consensus 101 ~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 136 (251)
T cd06439 101 LNRALALATGEIVVFTDANALLDPDALRLLVRHFAD 136 (251)
T ss_pred HHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcC
Confidence 9888888776779999999544 4457777777643
No 272
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=88.52 E-value=4.5 Score=33.91 Aligned_cols=99 Identities=22% Similarity=0.187 Sum_probs=59.0
Q ss_pred cccCCc-chHHHHHHHHHHCC--CcEEEEEecCchhhHHHHHhhhhhccC-ceeeEEEEcCCCCChHHHHHHHHhcCCCC
Q 013012 29 LPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVD-RLHVEVATVPEDVGTAGALRAIAHHLTAK 104 (451)
Q Consensus 29 lpv~gk-pli~~~l~~l~~~g--i~~iivv~~~~~~~~~i~~~~~~~~~~-~~~~~i~~~~~~~gt~~~l~~~~~~l~~~ 104 (451)
+|.-|+ ..|..+|+.+.+.. ..+++|+-.... +...+.+.+.... ...+.+...+...|.+.++..+.+....+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~--d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~~~ 80 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGST--DDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAKGD 80 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCc--cchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcCCC
Confidence 455554 78888999988764 345666654321 1122222222111 11234444556789999998888888767
Q ss_pred cEEEEcCCc-cCCCCchHHHHHHHhc
Q 013012 105 DVLVVSGDL-VSDVPPGAVTAAHRRH 129 (451)
Q Consensus 105 ~~lvl~~D~-i~~~~~~~~l~~~~~~ 129 (451)
.++++.+|. +.+..+..++..+.+.
T Consensus 81 ~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 81 IVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred EEEEECCCCCcChHHHHHHHHHhccC
Confidence 789999994 4444567774555443
No 273
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=88.23 E-value=3.5 Score=36.72 Aligned_cols=105 Identities=21% Similarity=0.178 Sum_probs=61.3
Q ss_pred cccCCc-chHHHHHHHHHHC------CCcEEEEEecCc-hh-hHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHh
Q 013012 29 LPVANR-PVLSYVLEQLELS------NIKDLIVVVEGA-DA-ALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAH 99 (451)
Q Consensus 29 lpv~gk-pli~~~l~~l~~~------gi~~iivv~~~~-~~-~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~ 99 (451)
+|.-|. .-|..+|+.+.+. ..-+++|+-+.- +. .+.++++... +. ..+.++..+...|.+.++..+.+
T Consensus 3 ip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~-~~--~~i~~i~~~~n~G~~~a~~~g~~ 79 (211)
T cd04188 3 IPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARK-NP--ALIRVLTLPKNRGKGGAVRAGML 79 (211)
T ss_pred EcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHh-CC--CcEEEEEcccCCCcHHHHHHHHH
Confidence 454443 5667777776543 234566654322 11 1223333221 11 11355555667899999999988
Q ss_pred cCCCCcEEEEcCC-ccCCCCchHHHHHHHhcCceEEEE
Q 013012 100 HLTAKDVLVVSGD-LVSDVPPGAVTAAHRRHDAVVTAM 136 (451)
Q Consensus 100 ~l~~~~~lvl~~D-~i~~~~~~~~l~~~~~~~~~~t~~ 136 (451)
....+.++++.+| .+.+..+..+++...+.+.++.+.
T Consensus 80 ~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g 117 (211)
T cd04188 80 AARGDYILFADADLATPFEELEKLEEALKTSGYDIAIG 117 (211)
T ss_pred HhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 8777789999999 444556788888755555554443
No 274
>PRK10073 putative glycosyl transferase; Provisional
Probab=87.94 E-value=4 Score=39.59 Aligned_cols=102 Identities=19% Similarity=0.179 Sum_probs=63.7
Q ss_pred cccCCc-chHHHHHHHHHHCCCc--EEEEEecCc-hhh-HHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcCCC
Q 013012 29 LPVANR-PVLSYVLEQLELSNIK--DLIVVVEGA-DAA-LRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA 103 (451)
Q Consensus 29 lpv~gk-pli~~~l~~l~~~gi~--~iivv~~~~-~~~-~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l~~ 103 (451)
+|+-|. ..|..+|+.+...... +++|+-..- +.. +.++++... ...+.++. .+..|.+.+.-.+++....
T Consensus 12 IP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~----~~~i~vi~-~~n~G~~~arN~gl~~a~g 86 (328)
T PRK10073 12 IPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAEN----YPHVRLLH-QANAGVSVARNTGLAVATG 86 (328)
T ss_pred EeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhh----CCCEEEEE-CCCCChHHHHHHHHHhCCC
Confidence 455444 7899999999876443 455553221 111 222333221 12355554 3467888888888888877
Q ss_pred CcEEEEcCC-ccCCCCchHHHHHHHhcCceEEE
Q 013012 104 KDVLVVSGD-LVSDVPPGAVTAAHRRHDAVVTA 135 (451)
Q Consensus 104 ~~~lvl~~D-~i~~~~~~~~l~~~~~~~~~~t~ 135 (451)
+.++++.+| .+.+..++.+++...+.+.++.+
T Consensus 87 ~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 87 KYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred CEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 788999999 66666678888877666666544
No 275
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=87.40 E-value=3.5 Score=36.98 Aligned_cols=101 Identities=19% Similarity=0.166 Sum_probs=61.4
Q ss_pred cccCCc-chHHHHHHHHHHCC---CcEEEEEecCc-h-hhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcCC
Q 013012 29 LPVANR-PVLSYVLEQLELSN---IKDLIVVVEGA-D-AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT 102 (451)
Q Consensus 29 lpv~gk-pli~~~l~~l~~~g---i~~iivv~~~~-~-~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l~ 102 (451)
+|.-|. ..|..+|+.+.+.. .-+++|+-+.- + ..+.++++... ...+.++..+...|.+.++..+.+...
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~----~~~i~~~~~~~n~G~~~a~n~g~~~a~ 78 (224)
T cd06442 3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKE----YPRVRLIVRPGKRGLGSAYIEGFKAAR 78 (224)
T ss_pred EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHh----CCceEEEecCCCCChHHHHHHHHHHcC
Confidence 455454 66888888887643 34566664321 1 11223333221 122456666677899999988888877
Q ss_pred CCcEEEEcCCcc-CCCCchHHHHHHHhcCceE
Q 013012 103 AKDVLVVSGDLV-SDVPPGAVTAAHRRHDAVV 133 (451)
Q Consensus 103 ~~~~lvl~~D~i-~~~~~~~~l~~~~~~~~~~ 133 (451)
.+.++++.+|.. .+..+..+++...+.+.++
T Consensus 79 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~ 110 (224)
T cd06442 79 GDVIVVMDADLSHPPEYIPELLEAQLEGGADL 110 (224)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCE
Confidence 677889999944 4445777777755555544
No 276
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=86.36 E-value=6 Score=35.95 Aligned_cols=102 Identities=15% Similarity=0.089 Sum_probs=58.7
Q ss_pred cccCCc-chHHHHHHHHHHCCC----cEEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcCCC
Q 013012 29 LPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA 103 (451)
Q Consensus 29 lpv~gk-pli~~~l~~l~~~gi----~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l~~ 103 (451)
+|.-|. +.|..+|+.+.+... -+++|+-+... +...+.+.........+.++. ....|-+.++..+.+....
T Consensus 6 ip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~--d~~~~~~~~~~~~~~~v~~i~-~~~~~~~~a~N~g~~~a~~ 82 (249)
T cd02525 6 IPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGST--DGTREIVQEYAAKDPRIRLID-NPKRIQSAGLNIGIRNSRG 82 (249)
T ss_pred EEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCC--ccHHHHHHHHHhcCCeEEEEe-CCCCCchHHHHHHHHHhCC
Confidence 344443 778888999876644 35666654321 122333332211122244443 2345666777778777766
Q ss_pred CcEEEEcCCc-cCCCCchHHHHHHHhcCceE
Q 013012 104 KDVLVVSGDL-VSDVPPGAVTAAHRRHDAVV 133 (451)
Q Consensus 104 ~~~lvl~~D~-i~~~~~~~~l~~~~~~~~~~ 133 (451)
+.++++.+|. +.+..++.+++.+.+.+..+
T Consensus 83 d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~ 113 (249)
T cd02525 83 DIIIRVDAHAVYPKDYILELVEALKRTGADN 113 (249)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHhcCCCCE
Confidence 7788888994 44445788887666555443
No 277
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=85.88 E-value=0.8 Score=45.54 Aligned_cols=39 Identities=28% Similarity=0.538 Sum_probs=33.0
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccC---CcchHHHHHHHHH
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLE 45 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~---gkpli~~~l~~l~ 45 (451)
..++++|||.|+|+ ....||.+.|++ |+.++++..+.+.
T Consensus 98 ~a~~llaGgqgtRL----g~~~pkg~~~~G~~~~~slf~~qae~il 139 (477)
T KOG2388|consen 98 VAVVLLAGGQGTRL----GSSGPKGCYPIGLPSGKSLFQIQAERIL 139 (477)
T ss_pred ceEEEeccCceeee----ccCCCcceeecCCccccchhhhhHHHHH
Confidence 56899999999999 788999999997 5568888777653
No 278
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=85.85 E-value=8.8 Score=33.60 Aligned_cols=97 Identities=15% Similarity=0.100 Sum_probs=57.2
Q ss_pred chHHHHHHHHHHCCCc--EEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcCCCCcEEEEcCC
Q 013012 35 PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD 112 (451)
Q Consensus 35 pli~~~l~~l~~~gi~--~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D 112 (451)
..+..+|+.+.+.... +++|+-+.... ..++.....+......+.++..+...|.+.++-.+.+....+.++++..|
T Consensus 15 ~~l~~~l~sl~~q~~~~~eiivvd~gs~d-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D 93 (202)
T cd04184 15 KYLREAIESVRAQTYPNWELCIADDASTD-PEVKRVLKKYAAQDPRIKVVFREENGGISAATNSALELATGEFVALLDHD 93 (202)
T ss_pred HHHHHHHHHHHhCcCCCeEEEEEeCCCCC-hHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHHHHHhhcCCEEEEECCC
Confidence 7788888888765433 56666443211 11222222111111235566566678888888888777766778888888
Q ss_pred c-cCCCCchHHHHHH-HhcCce
Q 013012 113 L-VSDVPPGAVTAAH-RRHDAV 132 (451)
Q Consensus 113 ~-i~~~~~~~~l~~~-~~~~~~ 132 (451)
. +.+..+..+++.+ ...+..
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~~~ 115 (202)
T cd04184 94 DELAPHALYEVVKALNEHPDAD 115 (202)
T ss_pred CcCChHHHHHHHHHHHhCCCCC
Confidence 4 4444578888776 333433
No 279
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=85.51 E-value=12 Score=34.26 Aligned_cols=105 Identities=15% Similarity=0.120 Sum_probs=59.8
Q ss_pred cccCCc-chHHHHHHHHHHCCCc----EEEEEecCchhhHHHHHhhhhhccCceeeEEEEc--CCCCChHHHHHHHHhcC
Q 013012 29 LPVANR-PVLSYVLEQLELSNIK----DLIVVVEGADAALRVGGWISAAYVDRLHVEVATV--PEDVGTAGALRAIAHHL 101 (451)
Q Consensus 29 lpv~gk-pli~~~l~~l~~~gi~----~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~--~~~~gt~~~l~~~~~~l 101 (451)
+|.-|. -.|..+|+.+.+.... +++|+...-. +...+.+.++.. ....+++.. ....|.+.++..+.+..
T Consensus 7 Ip~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~--d~t~~i~~~~~~-~~~~~i~~~~~~~~~G~~~a~n~g~~~a 83 (241)
T cd06427 7 VPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDD--EETIAAARALRL-PSIFRVVVVPPSQPRTKPKACNYALAFA 83 (241)
T ss_pred EecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCC--chHHHHHHHhcc-CCCeeEEEecCCCCCchHHHHHHHHHhc
Confidence 454444 6778888888765332 4555543221 122222322211 111333333 34468889999998887
Q ss_pred CCCcEEEEcCCcc-CCCCchHHHHHHHhcCceEEEE
Q 013012 102 TAKDVLVVSGDLV-SDVPPGAVTAAHRRHDAVVTAM 136 (451)
Q Consensus 102 ~~~~~lvl~~D~i-~~~~~~~~l~~~~~~~~~~t~~ 136 (451)
..+.++++.+|.. .+..+.++++...+.+..+.++
T Consensus 84 ~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 84 RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 6677888999954 4445778888776544454443
No 280
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=84.89 E-value=12 Score=35.54 Aligned_cols=102 Identities=16% Similarity=0.028 Sum_probs=63.1
Q ss_pred cccCCc--chHHHHHHHHHHCCC----cEEEEEecCchh--hHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhc
Q 013012 29 LPVANR--PVLSYVLEQLELSNI----KDLIVVVEGADA--ALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHH 100 (451)
Q Consensus 29 lpv~gk--pli~~~l~~l~~~gi----~~iivv~~~~~~--~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~ 100 (451)
+|.-|. ..|..+|+.+..... .+|+||-+.-.. .+.+.++..... ...++++..+...|.+.+.-.+++.
T Consensus 4 Ip~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~--~~~v~vi~~~~n~G~~~a~N~g~~~ 81 (299)
T cd02510 4 IIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKY--LPKVKVLRLKKREGLIRARIAGARA 81 (299)
T ss_pred EEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhc--CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 444444 488888988875432 367777542211 112211111111 1236777667778998888888887
Q ss_pred CCCCcEEEEcCC-ccCCCCchHHHHHHHhcCce
Q 013012 101 LTAKDVLVVSGD-LVSDVPPGAVTAAHRRHDAV 132 (451)
Q Consensus 101 l~~~~~lvl~~D-~i~~~~~~~~l~~~~~~~~~ 132 (451)
...+.++++..| .+.+..+..+++...+....
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~ 114 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKT 114 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCe
Confidence 777789999999 44555688888887665443
No 281
>PRK10018 putative glycosyl transferase; Provisional
Probab=84.43 E-value=17 Score=34.26 Aligned_cols=98 Identities=8% Similarity=0.091 Sum_probs=61.6
Q ss_pred cccCC-cchHHHHHHHHHHCCCc--EEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcCCCCc
Q 013012 29 LPVAN-RPVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD 105 (451)
Q Consensus 29 lpv~g-kpli~~~l~~l~~~gi~--~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l~~~~ 105 (451)
+|.-| ...|..+|+.+...... +++|+-..-...+.++++..... ...+.++..+...|.+.+.-.+.+....+.
T Consensus 11 ip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~--~~ri~~i~~~~n~G~~~a~N~gi~~a~g~~ 88 (279)
T PRK10018 11 MPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALN--DPRITYIHNDINSGACAVRNQAIMLAQGEY 88 (279)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcC--CCCEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 34444 47788899888765444 45555332111134455543321 124666666677899998888888777778
Q ss_pred EEEEcCC-ccCCCCchHHHHHHHh
Q 013012 106 VLVVSGD-LVSDVPPGAVTAAHRR 128 (451)
Q Consensus 106 ~lvl~~D-~i~~~~~~~~l~~~~~ 128 (451)
++++.+| .+.+..+..+++...+
T Consensus 89 I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 89 ITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred EEEECCCCCCCccHHHHHHHHHHh
Confidence 8999999 5555567778776554
No 282
>PRK11204 N-glycosyltransferase; Provisional
Probab=83.91 E-value=7.1 Score=39.18 Aligned_cols=100 Identities=16% Similarity=0.221 Sum_probs=61.3
Q ss_pred ccccCCc-chHHHHHHHHHHCCC--cEEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcCCCC
Q 013012 28 LLPVANR-PVLSYVLEQLELSNI--KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK 104 (451)
Q Consensus 28 llpv~gk-pli~~~l~~l~~~gi--~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l~~~ 104 (451)
++|.-|. ..|..+++.+.+... -+++|+-.... +...+.+.+......++.++..++..|-++++..+.+....+
T Consensus 59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~--d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~g~~~a~~d 136 (420)
T PRK11204 59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSS--DNTGEILDRLAAQIPRLRVIHLAENQGKANALNTGAAAARSE 136 (420)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCC--ccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 4565565 889999999876543 35665543221 112222221111112356665566789999999888877667
Q ss_pred cEEEEcCCcc-CCCCchHHHHHHHhc
Q 013012 105 DVLVVSGDLV-SDVPPGAVTAAHRRH 129 (451)
Q Consensus 105 ~~lvl~~D~i-~~~~~~~~l~~~~~~ 129 (451)
.++++.+|.+ .+..+..+++...+.
T Consensus 137 ~i~~lDaD~~~~~d~L~~l~~~~~~~ 162 (420)
T PRK11204 137 YLVCIDGDALLDPDAAAYMVEHFLHN 162 (420)
T ss_pred EEEEECCCCCCChhHHHHHHHHHHhC
Confidence 7999999954 444577777776543
No 283
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=82.96 E-value=11 Score=32.72 Aligned_cols=96 Identities=19% Similarity=0.118 Sum_probs=57.2
Q ss_pred cccCC-cchHHHHHHHHHHCCCc--EEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcCCCCc
Q 013012 29 LPVAN-RPVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD 105 (451)
Q Consensus 29 lpv~g-kpli~~~l~~l~~~gi~--~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l~~~~ 105 (451)
+|.-| ...|..+|+.+.+.... +++|+-+.- .+...+++.+.. .. ...+......|.+.++..+++....+.
T Consensus 4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s--~d~~~~~~~~~~-~~--~~~~~~~~~~g~~~a~n~~~~~a~~~~ 78 (202)
T cd06433 4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGS--TDGTVDIIKKYE-DK--ITYWISEPDKGIYDAMNKGIALATGDI 78 (202)
T ss_pred EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCC--CccHHHHHHHhH-hh--cEEEEecCCcCHHHHHHHHHHHcCCCE
Confidence 34434 36888999999776554 455553211 112223333221 11 223334556788999988888877777
Q ss_pred EEEEcCC-ccCCCCchHHHHHHHhc
Q 013012 106 VLVVSGD-LVSDVPPGAVTAAHRRH 129 (451)
Q Consensus 106 ~lvl~~D-~i~~~~~~~~l~~~~~~ 129 (451)
++++.+| .+.+..+..++....+.
T Consensus 79 v~~ld~D~~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 79 IGFLNSDDTLLPGALLAVVAAFAEH 103 (202)
T ss_pred EEEeCCCcccCchHHHHHHHHHHhC
Confidence 8888888 56666788877544433
No 284
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=81.57 E-value=11 Score=32.34 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=37.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhcCCCCcEEEEcCCccCC-CCchHHHHHHHhcCceE
Q 013012 79 VEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD-VPPGAVTAAHRRHDAVV 133 (451)
Q Consensus 79 ~~i~~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D~i~~-~~~~~~l~~~~~~~~~~ 133 (451)
+.++......|.+.++..+.+....+.++++.+|...+ ..+..+++.. +.+.++
T Consensus 57 i~~i~~~~n~G~~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~-~~~~~~ 111 (181)
T cd04187 57 VKVIRLSRNFGQQAALLAGLDHARGDAVITMDADLQDPPELIPEMLAKW-EEGYDV 111 (181)
T ss_pred EEEEEecCCCCcHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHH-hCCCcE
Confidence 55555556689999999888877777789999995444 4567777763 334443
No 285
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=81.20 E-value=10 Score=34.64 Aligned_cols=105 Identities=17% Similarity=0.175 Sum_probs=59.0
Q ss_pred cccCCc-chHHHHHHHHHHC----CCcEEEEEecCc-hh-hHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcC
Q 013012 29 LPVANR-PVLSYVLEQLELS----NIKDLIVVVEGA-DA-ALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL 101 (451)
Q Consensus 29 lpv~gk-pli~~~l~~l~~~----gi~~iivv~~~~-~~-~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l 101 (451)
+|.-|. .-|..+++.+.+. .--+|+|+-+.- +. .+.++++... +. ...+.++..+...|.+.++..+.+..
T Consensus 15 Ip~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~-~~-~~~v~~~~~~~n~G~~~a~n~g~~~a 92 (243)
T PLN02726 15 VPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKV-YG-EDRILLRPRPGKLGLGTAYIHGLKHA 92 (243)
T ss_pred EccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHh-cC-CCcEEEEecCCCCCHHHHHHHHHHHc
Confidence 344443 5666666666432 122555554321 11 1122222211 11 11244544456689889998888877
Q ss_pred CCCcEEEEcCCccC-CCCchHHHHHHHhcCceEEE
Q 013012 102 TAKDVLVVSGDLVS-DVPPGAVTAAHRRHDAVVTA 135 (451)
Q Consensus 102 ~~~~~lvl~~D~i~-~~~~~~~l~~~~~~~~~~t~ 135 (451)
..+.++++.+|... +..+..+++...+.++++..
T Consensus 93 ~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 127 (243)
T PLN02726 93 SGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVT 127 (243)
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEE
Confidence 66778999999554 44677888876666665543
No 286
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=80.56 E-value=33 Score=30.01 Aligned_cols=106 Identities=14% Similarity=0.147 Sum_probs=66.1
Q ss_pred CcchHHHHHHHHH-HCCCcEEEEEecCc--hhhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcCCCCcEEEE
Q 013012 33 NRPVLSYVLEQLE-LSNIKDLIVVVEGA--DAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVV 109 (451)
Q Consensus 33 gkpli~~~l~~l~-~~gi~~iivv~~~~--~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l~~~~~lvl 109 (451)
|-|++-|.+.... +.+.+--+|++.+. +-...+.+.+++.+.. .++.+..-....|.+.|...++.+...+.++++
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~-d~i~l~pR~~klGLgtAy~hgl~~a~g~fiviM 95 (238)
T KOG2978|consen 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGE-DNILLKPRTKKLGLGTAYIHGLKHATGDFIVIM 95 (238)
T ss_pred CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCC-CcEEEEeccCcccchHHHHhhhhhccCCeEEEE
Confidence 4578888887764 45666555555321 1112233333332221 125555445668998898899988866667888
Q ss_pred cCCcc-CCCCchHHHHHHHhcCceEEEEEee
Q 013012 110 SGDLV-SDVPPGAVTAAHRRHDAVVTAMICS 139 (451)
Q Consensus 110 ~~D~i-~~~~~~~~l~~~~~~~~~~t~~~~~ 139 (451)
.+|+= .+..+.+|++..++.+.+++..+..
T Consensus 96 DaDlsHhPk~ipe~i~lq~~~~~div~GTRY 126 (238)
T KOG2978|consen 96 DADLSHHPKFIPEFIRLQKEGNYDIVLGTRY 126 (238)
T ss_pred eCccCCCchhHHHHHHHhhccCcceeeeeeE
Confidence 89954 4556788998877777777766543
No 287
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=79.88 E-value=2.3 Score=46.80 Aligned_cols=62 Identities=19% Similarity=0.113 Sum_probs=43.6
Q ss_pred CEEeceEECCCCEECCC-cEEeceEECCCCEECCCcEEeCeE-ECCCCEECCCcEEcceEECCC
Q 013012 376 CSVKRSVIGRHCRIGSN-VKVVNSVVMNHVTIGDGCSIQGSV-ICSNAQLQERVALKDCQVLSL 437 (451)
Q Consensus 376 ~~i~~svig~~~~ig~~-~~i~~s~i~~~~~Ig~~~~i~~~i-i~~~~~i~~~~~i~~~~ig~~ 437 (451)
+.|.+|++..++.++++ ++|++|.|+.+++||++|.|.++. ...+..|.+++.|...-+|..
T Consensus 332 ~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~~~~~~~~vP~~~ci~~vpl~~~ 395 (974)
T PRK13412 332 MFVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGVPENSWNLDLPEGVCIDVVPVGDR 395 (974)
T ss_pred eEEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEecccccccceecCCCcEEEEEEcCCC
Confidence 35667888888888887 447788888888888888887775 444577777777665333443
No 288
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=79.80 E-value=14 Score=32.91 Aligned_cols=101 Identities=14% Similarity=0.103 Sum_probs=55.9
Q ss_pred cccCCc-chHHHHHHHHHHCCC----cEEEEEecCchhhHHHHHhhh-hhccCceeeEEEEcC--CCCChHHHHHHHHhc
Q 013012 29 LPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWIS-AAYVDRLHVEVATVP--EDVGTAGALRAIAHH 100 (451)
Q Consensus 29 lpv~gk-pli~~~l~~l~~~gi----~~iivv~~~~~~~~~i~~~~~-~~~~~~~~~~i~~~~--~~~gt~~~l~~~~~~ 100 (451)
+|.-|. ..|..+|+.+..... -+|+|+-.... +...+.+. ........+.++..+ ...|-+.++..+.+.
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~ 80 (229)
T cd04192 3 IAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHST--DGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIKA 80 (229)
T ss_pred EEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCC--cChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHHH
Confidence 455554 778899999866532 35555543211 11122222 111111234444333 235677777777776
Q ss_pred CCCCcEEEEcCCc-cCCCCchHHHHHHHhcCc
Q 013012 101 LTAKDVLVVSGDL-VSDVPPGAVTAAHRRHDA 131 (451)
Q Consensus 101 l~~~~~lvl~~D~-i~~~~~~~~l~~~~~~~~ 131 (451)
...+.++++.+|. +.+..++.+++.+.+.+.
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 112 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQI 112 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCC
Confidence 6667789999994 444457777776655443
No 289
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=79.66 E-value=20 Score=32.38 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=53.6
Q ss_pred cccCC-cchHHHHHHHHHHCCCc----EEEEEecCchh-hHHHHHhhhhhccCceeeEEEEcCCCCC-hHHHHHHHHhcC
Q 013012 29 LPVAN-RPVLSYVLEQLELSNIK----DLIVVVEGADA-ALRVGGWISAAYVDRLHVEVATVPEDVG-TAGALRAIAHHL 101 (451)
Q Consensus 29 lpv~g-kpli~~~l~~l~~~gi~----~iivv~~~~~~-~~~i~~~~~~~~~~~~~~~i~~~~~~~g-t~~~l~~~~~~l 101 (451)
+|.-| ...|..+|+.+.+.... +|+|+=+..+. .+.++++..++......+..+...+..| .+.++..+.+..
T Consensus 7 Ip~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~a 86 (232)
T cd06437 7 LPVFNEKYVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKVA 86 (232)
T ss_pred EecCCcHHHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHhC
Confidence 44444 47889999999765332 44444332221 1233443332211122344444444556 467787788777
Q ss_pred CCCcEEEEcCCccCCC-CchHHHHH
Q 013012 102 TAKDVLVVSGDLVSDV-PPGAVTAA 125 (451)
Q Consensus 102 ~~~~~lvl~~D~i~~~-~~~~~l~~ 125 (451)
+.+.++++.+|.+... .++.+...
T Consensus 87 ~~~~i~~~DaD~~~~~~~l~~~~~~ 111 (232)
T cd06437 87 KGEYVAIFDADFVPPPDFLQKTPPY 111 (232)
T ss_pred CCCEEEEEcCCCCCChHHHHHhhhh
Confidence 7778999999955544 45664443
No 290
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=79.36 E-value=16 Score=32.17 Aligned_cols=98 Identities=14% Similarity=0.192 Sum_probs=58.5
Q ss_pred ccccCCc-chHHHHHHHHHHCCC--cEEEEEecCc-h-hhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcCC
Q 013012 28 LLPVANR-PVLSYVLEQLELSNI--KDLIVVVEGA-D-AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT 102 (451)
Q Consensus 28 llpv~gk-pli~~~l~~l~~~gi--~~iivv~~~~-~-~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l~ 102 (451)
++|.-|. ..|..+|+.+.+... -+++|+-..- + ..+.++.+..+. ...+.+...+...|.+.++..+.....
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~---~~~~~~~~~~~~~G~~~~~n~g~~~~~ 79 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKD---PFIIILIRNGKNLGVARNFESLLQAAD 79 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcC---CceEEEEeCCCCccHHHHHHHHHHhCC
Confidence 3455554 678888988876543 3566654321 1 112233332211 112444555566899999888877776
Q ss_pred CCcEEEEcCC-ccCCCCchHHHHHHHh
Q 013012 103 AKDVLVVSGD-LVSDVPPGAVTAAHRR 128 (451)
Q Consensus 103 ~~~~lvl~~D-~i~~~~~~~~l~~~~~ 128 (451)
.+.++++..| .+.+..+..+++...+
T Consensus 80 g~~v~~ld~Dd~~~~~~l~~~~~~~~~ 106 (214)
T cd04196 80 GDYVFFCDQDDIWLPDKLERLLKAFLK 106 (214)
T ss_pred CCEEEEECCCcccChhHHHHHHHHHhc
Confidence 6778888888 5555567888876333
No 291
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=79.32 E-value=12 Score=37.99 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=62.2
Q ss_pred cccccCCc-chHHHHHHHHHHCCC--cEEEEEecCch--hhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcC
Q 013012 27 ALLPVANR-PVLSYVLEQLELSNI--KDLIVVVEGAD--AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL 101 (451)
Q Consensus 27 ~llpv~gk-pli~~~l~~l~~~gi--~~iivv~~~~~--~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l 101 (451)
-++|.-|. ..|..+++.+.+... -+++|+-.... ..+.++++..+ ...+.++..+...|-+.++..+....
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~----~~~v~vv~~~~n~Gka~AlN~gl~~a 154 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAE----DPRLRVIHLAHNQGKAIALRMGAAAA 154 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHh----CCCEEEEEeCCCCCHHHHHHHHHHhC
Confidence 46677776 778899999876532 35666653221 12233333222 12356665566788899998888877
Q ss_pred CCCcEEEEcCCccCCC-CchHHHHHHHh
Q 013012 102 TAKDVLVVSGDLVSDV-PPGAVTAAHRR 128 (451)
Q Consensus 102 ~~~~~lvl~~D~i~~~-~~~~~l~~~~~ 128 (451)
..+.++++.+|.+.+. .+..+++.+.+
T Consensus 155 ~~d~iv~lDAD~~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 155 RSEYLVCIDGDALLDKNAVPYLVAPLIA 182 (444)
T ss_pred CCCEEEEECCCCCcCHHHHHHHHHHHHh
Confidence 6677999999955544 56777766544
No 292
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=78.83 E-value=3.3 Score=32.35 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=9.3
Q ss_pred CCEECCCcEEeceEECCCCEE
Q 013012 386 HCRIGSNVKVVNSVVMNHVTI 406 (451)
Q Consensus 386 ~~~ig~~~~i~~s~i~~~~~I 406 (451)
...|+.++.|...+-.+.+.|
T Consensus 36 ~v~i~~~~~v~G~i~~~~~~i 56 (101)
T PF04519_consen 36 KVKIGGNGEVKGDIKADDVII 56 (101)
T ss_pred EEEEcCCCEEEEEEEEeEEEE
Confidence 444444444444444444444
No 293
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=77.17 E-value=22 Score=31.97 Aligned_cols=89 Identities=19% Similarity=0.138 Sum_probs=56.0
Q ss_pred chHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcCCCCcEEEEcCCcc
Q 013012 35 PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLV 114 (451)
Q Consensus 35 pli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D~i 114 (451)
+.|..+|+.+.+....+++|+..... +...+.+.... ....+.+. ..+..|-+.++..+.+....+.++++.+|..
T Consensus 14 ~~l~~~l~sl~~q~~~eiivvdd~s~--d~~~~~l~~~~-~~~~~~v~-~~~~~g~~~a~n~g~~~a~~d~v~~lD~D~~ 89 (235)
T cd06434 14 DVFRECLRSILRQKPLEIIVVTDGDD--EPYLSILSQTV-KYGGIFVI-TVPHPGKRRALAEGIRHVTTDIVVLLDSDTV 89 (235)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCC--hHHHHHHHhhc-cCCcEEEE-ecCCCChHHHHHHHHHHhCCCEEEEECCCce
Confidence 78999999998765667777765332 22223221111 11223333 2455788888888877776677999999954
Q ss_pred C-CCCchHHHHHHH
Q 013012 115 S-DVPPGAVTAAHR 127 (451)
Q Consensus 115 ~-~~~~~~~l~~~~ 127 (451)
. +..++.+++.+.
T Consensus 90 ~~~~~l~~l~~~~~ 103 (235)
T cd06434 90 WPPNALPEMLKPFE 103 (235)
T ss_pred eChhHHHHHHHhcc
Confidence 4 445777777765
No 294
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=77.08 E-value=25 Score=35.61 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=59.1
Q ss_pred ccccCCc-chHHHHHHHHHHCCCc----EEEEEecCc-hhhHHH-HHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhc
Q 013012 28 LLPVANR-PVLSYVLEQLELSNIK----DLIVVVEGA-DAALRV-GGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHH 100 (451)
Q Consensus 28 llpv~gk-pli~~~l~~l~~~gi~----~iivv~~~~-~~~~~i-~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~ 100 (451)
++|.-|. ..|..+++.+.+.... +|+|+-+.- +...++ +++ .+.+ ..+.+...+...|-+.++-.+.+.
T Consensus 54 IIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~-~~~~---~~v~v~~~~~~~Gka~AlN~gl~~ 129 (439)
T TIGR03111 54 IIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRA-QNEF---PGLSLRYMNSDQGKAKALNAAIYN 129 (439)
T ss_pred EEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHH-HHhC---CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 3455554 8899999999776432 455553321 111111 221 1111 124444455668999999999888
Q ss_pred CCCCcEEEEcCCccCCC-CchHHHHHHHhc
Q 013012 101 LTAKDVLVVSGDLVSDV-PPGAVTAAHRRH 129 (451)
Q Consensus 101 l~~~~~lvl~~D~i~~~-~~~~~l~~~~~~ 129 (451)
...+.++++.+|.+.+. .+.++++...+.
T Consensus 130 s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~ 159 (439)
T TIGR03111 130 SIGKYIIHIDSDGKLHKDAIKNMVTRFENN 159 (439)
T ss_pred ccCCEEEEECCCCCcChHHHHHHHHHHHhC
Confidence 77677889999955544 467777776543
No 295
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=76.77 E-value=2.8 Score=37.81 Aligned_cols=109 Identities=25% Similarity=0.288 Sum_probs=53.0
Q ss_pred ceEEEEecCCC---CCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceee
Q 013012 3 FQVVVLAGGTS---KKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (451)
Q Consensus 3 ~~avIlAgG~g---~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~ 79 (451)
|++||+--..+ |||.|. .+-.--.=.-+-|+..++..+.. ++ ++|++... .+..+.. ...++
T Consensus 1 m~~VIPvK~~~~aKSRLs~~----L~~~eR~~La~aMl~Dvl~al~~--v~-v~vVs~d~----~v~~~a~----~~~g~ 65 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPV----LSPEEREALALAMLRDVLAALRA--VD-VVVVSRDP----EVAALAR----ARLGA 65 (217)
T ss_dssp -EEEEE---TT-TTGGGTTT----S-HHHHHHHHHHHHHHHHHHHHH---S-EEEEES------S-TTTTT-------SS
T ss_pred CeEEEEcCCCCccccccCcc----CCHHHHHHHHHHHHHHHHHHHHh--cC-eEEeccch----hhhhhhh----hccCC
Confidence 56777765443 577543 11100000124788999999987 56 77776532 2222211 12346
Q ss_pred EEEEcCCCCChHHHHHHHHhcCCCCcEEEEcCC--ccCCCCchHHHHHHH
Q 013012 80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHR 127 (451)
Q Consensus 80 ~i~~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D--~i~~~~~~~~l~~~~ 127 (451)
.++..+ ..|.-.++..+......+.++++++| ++...++..++....
T Consensus 66 ~vl~d~-~~gLN~Al~~a~~~~~~~~vlvl~aDLPll~~~dl~~~l~~~~ 114 (217)
T PF01983_consen 66 EVLPDP-GRGLNAALNAALAAAGDDPVLVLPADLPLLTPEDLDALLAAAG 114 (217)
T ss_dssp EEEE----S-HHHHHHHHHH-H--S-EEEE-S--TT--HHHHHHHCT-SS
T ss_pred eEecCC-CCCHHHHHHHHHhccCCCceEEeecCCccCCHHHHHHHHhccC
Confidence 666443 57788888887444446789999999 788888888887643
No 296
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=75.47 E-value=26 Score=33.88 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=39.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhcCCCCcEEEEcCCcc-CCCCchHHHHHHHhcCceEE
Q 013012 79 VEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLV-SDVPPGAVTAAHRRHDAVVT 134 (451)
Q Consensus 79 ~~i~~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D~i-~~~~~~~~l~~~~~~~~~~t 134 (451)
+..+......|.+.++..+.+....+.++++.+|.- .+..+.++++... .+.++.
T Consensus 67 v~~i~~~~n~G~~~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~DvV 122 (325)
T PRK10714 67 IVAILLNRNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKAD-EGYDVV 122 (325)
T ss_pred EEEEEeCCCCCHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHH-hhCCEE
Confidence 333334556899999999988876677899999954 4457888888775 345543
No 297
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=75.11 E-value=41 Score=30.04 Aligned_cols=98 Identities=14% Similarity=0.116 Sum_probs=57.2
Q ss_pred ccccCCc--chHHHHHHHHHHCCCc----EEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCC-hHHHHHHHHhc
Q 013012 28 LLPVANR--PVLSYVLEQLELSNIK----DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVG-TAGALRAIAHH 100 (451)
Q Consensus 28 llpv~gk--pli~~~l~~l~~~gi~----~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~g-t~~~l~~~~~~ 100 (451)
.+|.-|. .++..+|+.+...... +++|+-+.. .+...+.+.... .+..+.++..+...| .++++..+.+.
T Consensus 6 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s--~d~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~n~~~~~ 82 (234)
T cd06421 6 FIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGR--RPELRALAAELG-VEYGYRYLTRPDNRHAKAGNLNNALAH 82 (234)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCC--chhHHHHHHHhh-cccCceEEEeCCCCCCcHHHHHHHHHh
Confidence 3455564 3788999999876543 566654432 223334343321 111334544444444 46667777777
Q ss_pred CCCCcEEEEcCC-ccCCCCchHHHHHHHh
Q 013012 101 LTAKDVLVVSGD-LVSDVPPGAVTAAHRR 128 (451)
Q Consensus 101 l~~~~~lvl~~D-~i~~~~~~~~l~~~~~ 128 (451)
...+.++++..| .+.+..+..+++...+
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhc
Confidence 766778889999 4445557777776654
No 298
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=74.71 E-value=32 Score=30.95 Aligned_cols=97 Identities=18% Similarity=0.157 Sum_probs=56.7
Q ss_pred ccccCCc-c-hHHHHHHHHHHCCC--cEEEEEecCchhh---HHHHHhhhhhccCceeeEEEEcCCCCCh-HHHHHHHHh
Q 013012 28 LLPVANR-P-VLSYVLEQLELSNI--KDLIVVVEGADAA---LRVGGWISAAYVDRLHVEVATVPEDVGT-AGALRAIAH 99 (451)
Q Consensus 28 llpv~gk-p-li~~~l~~l~~~gi--~~iivv~~~~~~~---~~i~~~~~~~~~~~~~~~i~~~~~~~gt-~~~l~~~~~ 99 (451)
++|.-|. | +|..+|+.+.+... -+++|+-+..... +.++++..+. . ..+.++...+..|- ++++..+.+
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~-~--~~i~~i~~~~~~G~~~~a~n~g~~ 79 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQL-G--ERFRFFHVEPLPGAKAGALNYALE 79 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHh-C--CcEEEEEcCCCCCCchHHHHHHHH
Confidence 3566665 3 79999999987653 3566655432111 1233433321 1 12445544444563 777877777
Q ss_pred cCC--CCcEEEEcCC-ccCCCCchHHHHHHH
Q 013012 100 HLT--AKDVLVVSGD-LVSDVPPGAVTAAHR 127 (451)
Q Consensus 100 ~l~--~~~~lvl~~D-~i~~~~~~~~l~~~~ 127 (451)
... .+.++++..| .+.+..+..++....
T Consensus 80 ~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 80 RTAPDAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred hcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 654 3568899999 445556777777664
No 299
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=74.38 E-value=46 Score=32.28 Aligned_cols=100 Identities=16% Similarity=0.178 Sum_probs=58.2
Q ss_pred cccCC-cchHHHHHHHHHHC---------C-CcEEEEEecC-chh-hHHHHHhhhhhccCceeeEEEEcCCCCChHHHHH
Q 013012 29 LPVAN-RPVLSYVLEQLELS---------N-IKDLIVVVEG-ADA-ALRVGGWISAAYVDRLHVEVATVPEDVGTAGALR 95 (451)
Q Consensus 29 lpv~g-kpli~~~l~~l~~~---------g-i~~iivv~~~-~~~-~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~ 95 (451)
+|.-| .+-|..+++.+.+. . --+++||-.. .+. .+.++++..+......++.++..+...|.+.++.
T Consensus 76 IP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~ 155 (333)
T PTZ00260 76 IPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVR 155 (333)
T ss_pred EeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHH
Confidence 34444 47777777776431 1 2456666432 121 2223333322100112366666667789999999
Q ss_pred HHHhcCCCCcEEEEcCCccC-CCCchHHHHHHHh
Q 013012 96 AIAHHLTAKDVLVVSGDLVS-DVPPGAVTAAHRR 128 (451)
Q Consensus 96 ~~~~~l~~~~~lvl~~D~i~-~~~~~~~l~~~~~ 128 (451)
.+.+....+.++++.+|... ..++..+++...+
T Consensus 156 ~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 156 IGMLASRGKYILMVDADGATDIDDFDKLEDIMLK 189 (333)
T ss_pred HHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 98887666778899999544 4467777776553
No 300
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=72.13 E-value=49 Score=28.45 Aligned_cols=96 Identities=23% Similarity=0.222 Sum_probs=54.0
Q ss_pred ccccCCc-chHHHHHHHHHHCCC----cEEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcCC
Q 013012 28 LLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT 102 (451)
Q Consensus 28 llpv~gk-pli~~~l~~l~~~gi----~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l~ 102 (451)
++|.-|. ..|..+|+.+.+... -+++|+..... +...+..... . ..+.........|.+.++..+.+...
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~--D~t~~~~~~~-~--~~~~~~~~~~~~gk~~aln~g~~~a~ 76 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCT--DDTAQVARAA-G--ATVLERHDPERRGKGYALDFGFRHLL 76 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCC--chHHHHHHHc-C--CeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 3565554 788888999876543 35666654321 2222333221 1 11212222344688888877765442
Q ss_pred -----CCcEEEEcCCccCC-CCchHHHHHHHh
Q 013012 103 -----AKDVLVVSGDLVSD-VPPGAVTAAHRR 128 (451)
Q Consensus 103 -----~~~~lvl~~D~i~~-~~~~~~l~~~~~ 128 (451)
.+.++++.+|...+ ..+..+++.+.+
T Consensus 77 ~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 77 NLADDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred hcCCCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 45688999995544 456777776654
No 301
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=70.87 E-value=34 Score=31.96 Aligned_cols=91 Identities=13% Similarity=0.099 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcC---CCCcEEEEcC
Q 013012 35 PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL---TAKDVLVVSG 111 (451)
Q Consensus 35 pli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l---~~~~~lvl~~ 111 (451)
..|..+++.+.+. ..+|+|+=+.....+.++....+ ...+.++..++..|-+.+...+++.. ..+.++++..
T Consensus 8 ~~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~----~~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~ 82 (281)
T TIGR01556 8 EHLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLR----GQKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQ 82 (281)
T ss_pred HHHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhcc----CCCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECC
Confidence 4677788887765 45666664431111233332221 12466776677789998888776654 3467899999
Q ss_pred CccC-CCCchHHHHHHHhcC
Q 013012 112 DLVS-DVPPGAVTAAHRRHD 130 (451)
Q Consensus 112 D~i~-~~~~~~~l~~~~~~~ 130 (451)
|.+. +..+..+++...+.+
T Consensus 83 D~~~~~~~l~~l~~~~~~~~ 102 (281)
T TIGR01556 83 DSRPGNAFLAAQWKLLSAEN 102 (281)
T ss_pred CCCCCHHHHHHHHHHHHhcC
Confidence 9554 445677777665543
No 302
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=68.82 E-value=34 Score=30.31 Aligned_cols=94 Identities=22% Similarity=0.153 Sum_probs=53.4
Q ss_pred cccCCc-chHHHHHHHHHHCC--CcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcCCCCc
Q 013012 29 LPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD 105 (451)
Q Consensus 29 lpv~gk-pli~~~l~~l~~~g--i~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l~~~~ 105 (451)
+|+-|. +.|..+|+.+.+.- ..+++|+-+.. .+...+.+.+ ..+.+. ....|.+.+...+.+....+.
T Consensus 5 i~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s--~d~~~~~~~~-----~~~~~~--~~~~g~~~a~n~g~~~a~~~~ 75 (221)
T cd02522 5 IPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGS--TDGTVAIARS-----AGVVVI--SSPKGRARQMNAGAAAARGDW 75 (221)
T ss_pred EEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCC--CccHHHHHhc-----CCeEEE--eCCcCHHHHHHHHHHhccCCE
Confidence 455454 67888888887653 24565554322 1122232322 123333 345677777777777776677
Q ss_pred EEEEcCCccC-CCCchHHHHHHHhcCc
Q 013012 106 VLVVSGDLVS-DVPPGAVTAAHRRHDA 131 (451)
Q Consensus 106 ~lvl~~D~i~-~~~~~~~l~~~~~~~~ 131 (451)
++++..|... +..++.++....+.+.
T Consensus 76 i~~~D~D~~~~~~~l~~l~~~~~~~~~ 102 (221)
T cd02522 76 LLFLHADTRLPPDWDAAIIETLRADGA 102 (221)
T ss_pred EEEEcCCCCCChhHHHHHHHHhhcCCc
Confidence 8999999444 4445666555544433
No 303
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=66.10 E-value=22 Score=29.91 Aligned_cols=67 Identities=15% Similarity=0.269 Sum_probs=45.6
Q ss_pred CEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEEcc-eEECCC
Q 013012 370 SQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD-CQVLSL 437 (451)
Q Consensus 370 ~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~-~~ig~~ 437 (451)
+.|++..+|+..+.-+...| +|...++....+.+.|...+.+.+-|=++...|..|+.+.+ |..-..
T Consensus 58 iiv~~~g~V~gei~a~~~iv-~G~v~Gni~~a~~Vei~~~g~v~GdI~~~~i~v~~Ga~f~G~~~~~~~ 125 (146)
T COG1664 58 IVVGESGRVEGEIEAEHLIV-EGKVEGNILAAERVELYPGGRVIGDITTKEITVEEGAIFEGDCEMLEE 125 (146)
T ss_pred EEECCccEEEEEEEeCEEEE-eeEEEEEEEEeeEEEEcCCcEEeeeecccEEEEccCCEEEeEEEeccC
Confidence 55666666665555555555 56666667777888888888888777778888888888775 444333
No 304
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=65.94 E-value=62 Score=29.18 Aligned_cols=93 Identities=17% Similarity=0.077 Sum_probs=56.5
Q ss_pred cccCCc-chHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcCCCCcEE
Q 013012 29 LPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVL 107 (451)
Q Consensus 29 lpv~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l~~~~~l 107 (451)
+|.-|. ..|..+|+.+... .++|+|+-+.-. +...+.+.+ .++++... ...|.+.+...+++....+.++
T Consensus 6 i~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gSt--D~t~~i~~~-----~~~~v~~~-~~~g~~~~~n~~~~~a~~d~vl 76 (229)
T cd02511 6 IITKNEERNIERCLESVKWA-VDEIIVVDSGST--DRTVEIAKE-----YGAKVYQR-WWDGFGAQRNFALELATNDWVL 76 (229)
T ss_pred EEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCC--ccHHHHHHH-----cCCEEEEC-CCCChHHHHHHHHHhCCCCEEE
Confidence 444443 6788888888654 367877765321 122222222 23455544 5678888887788877777899
Q ss_pred EEcCCccC-CCCchHHHHHHHhcC
Q 013012 108 VVSGDLVS-DVPPGAVTAAHRRHD 130 (451)
Q Consensus 108 vl~~D~i~-~~~~~~~l~~~~~~~ 130 (451)
++.+|.+. +..+..+.+...+..
T Consensus 77 ~lDaD~~~~~~~~~~l~~~~~~~~ 100 (229)
T cd02511 77 SLDADERLTPELADEILALLATDD 100 (229)
T ss_pred EEeCCcCcCHHHHHHHHHHHhCCC
Confidence 99999444 444566666554443
No 305
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=65.36 E-value=19 Score=27.97 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=35.8
Q ss_pred CCEECCCCEEeceEECCCCEECCCcEEeceEEC-CCCEECCCcEEeCeEECCCCEECCCcEEcc
Q 013012 369 GSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVM-NHVTIGDGCSIQGSVICSNAQLQERVALKD 431 (451)
Q Consensus 369 ~~~i~~~~~i~~svig~~~~ig~~~~i~~s~i~-~~~~Ig~~~~i~~~ii~~~~~i~~~~~i~~ 431 (451)
...|++++.|+..+-.+.+.| .+. +.+.+.. +.+.|...+.+.+.+-.+...|.+++.+.+
T Consensus 36 ~v~i~~~~~v~G~i~~~~~~i-~G~-v~G~v~a~~~v~i~~~~~v~G~i~~~~l~v~~ga~i~G 97 (101)
T PF04519_consen 36 KVKIGGNGEVKGDIKADDVII-SGS-VDGNVEASGKVEIYGTARVEGDITAGKLEVEGGASING 97 (101)
T ss_pred EEEEcCCCEEEEEEEEeEEEE-cCE-EeEEEEECceEEEeCCEEEEEEEEECEEEEeCCCEEEE
Confidence 345555555554444555555 233 3333333 566777777777777777777777776654
No 306
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=65.28 E-value=77 Score=31.39 Aligned_cols=105 Identities=16% Similarity=0.121 Sum_probs=59.1
Q ss_pred ccccCC-cchHHHHHHHHHHCCC---cEEEEEecCc-hhh-HHHHHhhhhhccCceeeEEEEcCC-C---CChHHHHHHH
Q 013012 28 LLPVAN-RPVLSYVLEQLELSNI---KDLIVVVEGA-DAA-LRVGGWISAAYVDRLHVEVATVPE-D---VGTAGALRAI 97 (451)
Q Consensus 28 llpv~g-kpli~~~l~~l~~~gi---~~iivv~~~~-~~~-~~i~~~~~~~~~~~~~~~i~~~~~-~---~gt~~~l~~~ 97 (451)
.+|.-| .+.|..+|+.+.+... -+|+|+-+.- +.. +.++++..+ +.....+.++..++ + .|-..++..+
T Consensus 45 IIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~-~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g 123 (384)
T TIGR03469 45 VVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARA-YGRGDRLTVVSGQPLPPGWSGKLWAVSQG 123 (384)
T ss_pred EEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHh-cCCCCcEEEecCCCCCCCCcchHHHHHHH
Confidence 445555 4999999999977543 2566665422 111 223333221 11111245543222 1 3656677777
Q ss_pred HhcCC-----CCcEEEEcCCcc-CCCCchHHHHHHHhcCceE
Q 013012 98 AHHLT-----AKDVLVVSGDLV-SDVPPGAVTAAHRRHDAVV 133 (451)
Q Consensus 98 ~~~l~-----~~~~lvl~~D~i-~~~~~~~~l~~~~~~~~~~ 133 (451)
.+... .+.++++.+|.. .+..++.+++...+.+.++
T Consensus 124 ~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 124 IAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred HHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 66554 466899999954 4555788888776655443
No 307
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=64.82 E-value=53 Score=29.43 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=52.4
Q ss_pred cCCc-chHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcCCC---CcE
Q 013012 31 VANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA---KDV 106 (451)
Q Consensus 31 v~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l~~---~~~ 106 (451)
.++. ..|..+|+.+... ..+++|+=+..+. ....... . ...++.++..+...|-+.+...+.+.... +.+
T Consensus 6 yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~--~~~~~~~-~--~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v 79 (237)
T cd02526 6 YNPDLSKLKELLAALAEQ-VDKVVVVDNSSGN--DIELRLR-L--NSEKIELIHLGENLGIAKALNIGIKAALENGADYV 79 (237)
T ss_pred ecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCc--cHHHHhh-c--cCCcEEEEECCCceehHHhhhHHHHHHHhCCCCEE
Confidence 3455 7888899988766 5566666432211 1111111 1 12346666666678888888777766533 678
Q ss_pred EEEcCCccCCC-CchHHH
Q 013012 107 LVVSGDLVSDV-PPGAVT 123 (451)
Q Consensus 107 lvl~~D~i~~~-~~~~~l 123 (451)
+++.+|...+. .+..++
T Consensus 80 ~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 80 LLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred EEECCCCCcCHhHHHHHH
Confidence 99999955444 456664
No 308
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=64.81 E-value=63 Score=28.15 Aligned_cols=97 Identities=16% Similarity=0.126 Sum_probs=51.8
Q ss_pred ccccCCc-chHHHHHHHHHHCC--CcEEEEEecCchh--hHHHHHhhhhhccCceeeEEEEcCCCCCh---HHHHHHHHh
Q 013012 28 LLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADA--ALRVGGWISAAYVDRLHVEVATVPEDVGT---AGALRAIAH 99 (451)
Q Consensus 28 llpv~gk-pli~~~l~~l~~~g--i~~iivv~~~~~~--~~~i~~~~~~~~~~~~~~~i~~~~~~~gt---~~~l~~~~~ 99 (451)
.+|+-|. +-|...|+.+.+.. --+++|+...... .+.++++.... .+..+.++..+...|. +.++..+.+
T Consensus 6 iip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~n~g~~ 83 (196)
T cd02520 6 LKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKY--PNVDARLLIGGEKVGINPKVNNLIKGYE 83 (196)
T ss_pred EEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHC--CCCcEEEEecCCcCCCCHhHHHHHHHHH
Confidence 3455443 66888888887643 2456666543211 12233332221 1223445544434343 345556666
Q ss_pred cCCCCcEEEEcCCcc-CCCCchHHHHHH
Q 013012 100 HLTAKDVLVVSGDLV-SDVPPGAVTAAH 126 (451)
Q Consensus 100 ~l~~~~~lvl~~D~i-~~~~~~~~l~~~ 126 (451)
....+.++++.+|.. .+..+..+++..
T Consensus 84 ~a~~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 84 EARYDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred hCCCCEEEEECCCceEChhHHHHHHHHh
Confidence 666677888899944 444566666654
No 309
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=64.15 E-value=43 Score=29.23 Aligned_cols=91 Identities=16% Similarity=0.220 Sum_probs=51.7
Q ss_pred cchHHHHHHHHHHCCC--cEEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcC---CCCcEEE
Q 013012 34 RPVLSYVLEQLELSNI--KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL---TAKDVLV 108 (451)
Q Consensus 34 kpli~~~l~~l~~~gi--~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l---~~~~~lv 108 (451)
...|..+|+.+.+... .+++|+-+.. .+...+++.+.. ...++.++..+...|.+.++..+.+.. ..+.+++
T Consensus 9 ~~~l~~~l~sl~~q~~~~~eiiivD~~s--~d~t~~~~~~~~-~~~~i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~ 85 (202)
T cd04185 9 LDLLKECLDALLAQTRPPDHIIVIDNAS--TDGTAEWLTSLG-DLDNIVYLRLPENLGGAGGFYEGVRRAYELGYDWIWL 85 (202)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEECCC--CcchHHHHHHhc-CCCceEEEECccccchhhHHHHHHHHHhccCCCEEEE
Confidence 4678899999977532 3566664322 123334443321 122355665666777777666554432 3456888
Q ss_pred EcCCccCCC-CchHHHHHHH
Q 013012 109 VSGDLVSDV-PPGAVTAAHR 127 (451)
Q Consensus 109 l~~D~i~~~-~~~~~l~~~~ 127 (451)
+..|.+.+. -+..+++...
T Consensus 86 ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 86 MDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred eCCCCCcChHHHHHHHHHHh
Confidence 888855544 4566666554
No 310
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=62.93 E-value=49 Score=28.14 Aligned_cols=96 Identities=13% Similarity=0.084 Sum_probs=51.3
Q ss_pred cccCCc-chHHHHHHHHHHCC--CcEEEEEecCchhhHHHHHhhhhhcc-CceeeEEEEcC-CCCChHHHHHHHHhcCCC
Q 013012 29 LPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYV-DRLHVEVATVP-EDVGTAGALRAIAHHLTA 103 (451)
Q Consensus 29 lpv~gk-pli~~~l~~l~~~g--i~~iivv~~~~~~~~~i~~~~~~~~~-~~~~~~i~~~~-~~~gt~~~l~~~~~~l~~ 103 (451)
+|.-|+ ..|..+|+.+.+.. ..+++|+-.... +...+++.+... ....+..+... ...|.+.++..+.+....
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~g 80 (182)
T cd06420 3 ITTYNRPEALELVLKSVLNQSILPFEVIIADDGST--EETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAKG 80 (182)
T ss_pred EeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCc--hhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhcC
Confidence 344443 67889999987642 345666544221 122233332211 01122222222 234666777777776666
Q ss_pred CcEEEEcCCccCCC-CchHHHHHH
Q 013012 104 KDVLVVSGDLVSDV-PPGAVTAAH 126 (451)
Q Consensus 104 ~~~lvl~~D~i~~~-~~~~~l~~~ 126 (451)
+.++++.+|.+... -+..+++.+
T Consensus 81 ~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 81 DYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred CEEEEEcCCcccCHHHHHHHHHHh
Confidence 77899999955444 356666554
No 311
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=61.96 E-value=29 Score=30.50 Aligned_cols=106 Identities=21% Similarity=0.239 Sum_probs=65.2
Q ss_pred ceEEEEe---cCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceee
Q 013012 3 FQVVVLA---GGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (451)
Q Consensus 3 ~~avIlA---gG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~ 79 (451)
|.+||+- ++.-|||.|.-....-+-|+ .-|+-.++..+... +.+|.|++... .+..+.. + .
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~~----laML~dvi~Al~~~-~~~i~Vvtpde----~~~~~a~-----~--~ 64 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENFA----LAMLVDVLGALAGV-LGEITVVTPDE----EVLVPAT-----K--L 64 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHHH----HHHHHHHHHHhhhh-cCCceEEcCCh----Hhhhhcc-----c--c
Confidence 4566654 35667887752222222222 36888999998776 78899998743 2222111 1 2
Q ss_pred EEEEcCCCCChHHHHHHHHhcCCC-CcEEEEcCC--ccCCCCchHHHHHHH
Q 013012 80 EVATVPEDVGTAGALRAIAHHLTA-KDVLVVSGD--LVSDVPPGAVTAAHR 127 (451)
Q Consensus 80 ~i~~~~~~~gt~~~l~~~~~~l~~-~~~lvl~~D--~i~~~~~~~~l~~~~ 127 (451)
++... .+.-.++.++.+.+.. +.++|+.+| ++.+.+++.+++..+
T Consensus 65 ~vl~d---~dLN~Ai~aa~~~~~~p~~v~vvmaDLPLl~~~~i~~~~~~~~ 112 (210)
T COG1920 65 EVLAD---PDLNTAINAALDEIPLPSEVIVVMADLPLLSPEHIERALSAAK 112 (210)
T ss_pred eeeec---cchHHHHHHHHhhCCCCcceEEEecccccCCHHHHHHHHHhcC
Confidence 33322 2255677777777643 569999999 788888888887644
No 312
>PRK10063 putative glycosyl transferase; Provisional
Probab=57.61 E-value=1.6e+02 Score=27.12 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=48.4
Q ss_pred cchHHHHHHHHHH----CCC-cEEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcCCCCcEEE
Q 013012 34 RPVLSYVLEQLEL----SNI-KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLV 108 (451)
Q Consensus 34 kpli~~~l~~l~~----~gi-~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l~~~~~lv 108 (451)
...|..+|+.+.. .+. -+++|+=+.- .+...+.+.++. ...++.++..+ ..|.+.++..+++....+.+++
T Consensus 13 ~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgS--tD~t~~i~~~~~-~~~~i~~i~~~-~~G~~~A~N~Gi~~a~g~~v~~ 88 (248)
T PRK10063 13 LEGIVKTHASLRHLAQDPGISFEWIVVDGGS--NDGTREFLENLN-GIFNLRFVSEP-DNGIYDAMNKGIAMAQGRFALF 88 (248)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEECcC--cccHHHHHHHhc-ccCCEEEEECC-CCCHHHHHHHHHHHcCCCEEEE
Confidence 4567888887753 122 2455543211 112223233221 11235565543 4699999988888776677888
Q ss_pred EcCCccCCCCchHHHHHHH
Q 013012 109 VSGDLVSDVPPGAVTAAHR 127 (451)
Q Consensus 109 l~~D~i~~~~~~~~l~~~~ 127 (451)
+.+|-+...+..+++....
T Consensus 89 ld~DD~~~~~~~~~~~~~~ 107 (248)
T PRK10063 89 LNSGDIFHQDAANFVRQLK 107 (248)
T ss_pred EeCCcccCcCHHHHHHHHH
Confidence 8877333334444444443
No 313
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=57.41 E-value=1.4e+02 Score=26.43 Aligned_cols=101 Identities=20% Similarity=0.193 Sum_probs=57.5
Q ss_pred cccCC-cchHHHHHHHHHHCCC---cEEEEEecCc-hh-hHHHHHhhhhhccCceeeEEEEc----CCCCChHHHHHHHH
Q 013012 29 LPVAN-RPVLSYVLEQLELSNI---KDLIVVVEGA-DA-ALRVGGWISAAYVDRLHVEVATV----PEDVGTAGALRAIA 98 (451)
Q Consensus 29 lpv~g-kpli~~~l~~l~~~gi---~~iivv~~~~-~~-~~~i~~~~~~~~~~~~~~~i~~~----~~~~gt~~~l~~~~ 98 (451)
+|.-| ...|..+|+.+..... -+++|+-..- +. .+.++++..+. ...++.++.. +...|.+.+.-.+.
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~G~~~a~N~g~ 80 (219)
T cd06913 3 LPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKL--EDSGVIVLVGSHNSPSPKGVGYAKNQAI 80 (219)
T ss_pred EeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhC--cccCeEEEEecccCCCCccHHHHHHHHH
Confidence 44433 4788999999876533 2566654322 11 12333332221 1113444332 23367877777777
Q ss_pred hcCCCCcEEEEcCC-ccCCCCchHHHHHHHhcCc
Q 013012 99 HHLTAKDVLVVSGD-LVSDVPPGAVTAAHRRHDA 131 (451)
Q Consensus 99 ~~l~~~~~lvl~~D-~i~~~~~~~~l~~~~~~~~ 131 (451)
+....+.++++.+| .+.+..+..++....+...
T Consensus 81 ~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~ 114 (219)
T cd06913 81 AQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPN 114 (219)
T ss_pred HhcCCCEEEEECCCccCChhHHHHHHHHHHhCCC
Confidence 77666779999999 5555567777776655443
No 314
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=57.38 E-value=86 Score=27.23 Aligned_cols=95 Identities=18% Similarity=0.169 Sum_probs=51.2
Q ss_pred cccCC-cchHHHHHHHHHHCC-CcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEcC---CCCChHHHHHHHHhcCC-
Q 013012 29 LPVAN-RPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVP---EDVGTAGALRAIAHHLT- 102 (451)
Q Consensus 29 lpv~g-kpli~~~l~~l~~~g-i~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~---~~~gt~~~l~~~~~~l~- 102 (451)
+|.-| ...|..+|+.+.+.. -.+|+|+-..-. +...+.+. ......++.++... ...|-+.++..+++.+.
T Consensus 3 Ip~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~--D~t~~~~~-~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~ 79 (191)
T cd06436 3 VPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASD--DDTAGIVR-LAITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQ 79 (191)
T ss_pred EeccccHHHHHHHHHHHHhCCCCeEEEEEECCCC--cCHHHHHh-heecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhh
Confidence 45444 478899999997754 234555543221 12222232 11111235554432 24688888888766542
Q ss_pred ----------CCcEEEEcCCccC-CCCchHHHHHH
Q 013012 103 ----------AKDVLVVSGDLVS-DVPPGAVTAAH 126 (451)
Q Consensus 103 ----------~~~~lvl~~D~i~-~~~~~~~l~~~ 126 (451)
.+.++++.+|... +..+..+....
T Consensus 80 ~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~ 114 (191)
T cd06436 80 ILIEEGADPERVIIAVIDADGRLDPNALEAVAPYF 114 (191)
T ss_pred hccccccCCCccEEEEECCCCCcCHhHHHHHHHhh
Confidence 1358899999554 44556654443
No 315
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=55.66 E-value=1.1e+02 Score=27.75 Aligned_cols=97 Identities=20% Similarity=0.155 Sum_probs=57.8
Q ss_pred EEEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEc
Q 013012 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (451)
Q Consensus 5 avIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 84 (451)
.++||-|.-..| +...| .+. -.++|..++..+... .++-|++...+ ++.....+|..-...+.+...
T Consensus 91 illlCTG~F~~l----~~~~~-lle---P~ril~~lV~al~~~--~~vGVivP~~e---Q~~~~~~kW~~l~~~~~~a~a 157 (221)
T PF07302_consen 91 ILLLCTGEFPGL----TARNP-LLE---PDRILPPLVAALVGG--HQVGVIVPLPE---QIAQQAEKWQPLGNPVVVAAA 157 (221)
T ss_pred EEEeccCCCCCC----CCCcc-eee---hHHhHHHHHHHhcCC--CeEEEEecCHH---HHHHHHHHHHhcCCCeEEEEe
Confidence 466777765555 33333 222 357888888887544 78888887543 333222233211123555554
Q ss_pred CCCCChHHHHHHHHhcCC--CCcEEEEcCCcc
Q 013012 85 PEDVGTAGALRAIAHHLT--AKDVLVVSGDLV 114 (451)
Q Consensus 85 ~~~~gt~~~l~~~~~~l~--~~~~lvl~~D~i 114 (451)
....|+.+.+..+.+.+. .-+++|+.|=-+
T Consensus 158 sPy~~~~~~l~~Aa~~L~~~gadlIvLDCmGY 189 (221)
T PF07302_consen 158 SPYEGDEEELAAAARELAEQGADLIVLDCMGY 189 (221)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 455588888888776665 567999998544
No 316
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=54.92 E-value=72 Score=31.42 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=57.7
Q ss_pred ccccCCc-chHHHHHHHHHHCCC--cEEEEEecCchh--hHHHHHhhhhhccCceeeEEEEcCCCCC---hHHHHHHHHh
Q 013012 28 LLPVANR-PVLSYVLEQLELSNI--KDLIVVVEGADA--ALRVGGWISAAYVDRLHVEVATVPEDVG---TAGALRAIAH 99 (451)
Q Consensus 28 llpv~gk-pli~~~l~~l~~~gi--~~iivv~~~~~~--~~~i~~~~~~~~~~~~~~~i~~~~~~~g---t~~~l~~~~~ 99 (451)
++|..|. +.|...|+.+.+... -+|+++....++ .+.++++..+ +. ..+++++..+++.| -..++..+.+
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~-~p-~~~i~~v~~~~~~G~~~K~~~l~~~~~ 123 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRAD-FP-DADIDLVIDARRHGPNRKVSNLINMLP 123 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHh-CC-CCceEEEECCCCCCCChHHHHHHHHHH
Confidence 5677665 899999999987653 366665442221 1233333222 21 23455554444444 3355555556
Q ss_pred cCCCCcEEEEcCCccCC-CCchHHHHHHHhcC
Q 013012 100 HLTAKDVLVVSGDLVSD-VPPGAVTAAHRRHD 130 (451)
Q Consensus 100 ~l~~~~~lvl~~D~i~~-~~~~~~l~~~~~~~ 130 (451)
..+.+.++++.+|...+ .-++.++....+.+
T Consensus 124 ~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~ 155 (373)
T TIGR03472 124 HARHDILVIADSDISVGPDYLRQVVAPLADPD 155 (373)
T ss_pred hccCCEEEEECCCCCcChhHHHHHHHHhcCCC
Confidence 66667799999995444 44666766654333
No 317
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=54.86 E-value=45 Score=28.08 Aligned_cols=51 Identities=10% Similarity=0.097 Sum_probs=23.9
Q ss_pred EeceEECCC-CEECCCcEEeceEECCCCEECCCcEEeCeEECCCCEECCCcEE
Q 013012 378 VKRSVIGRH-CRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVAL 429 (451)
Q Consensus 378 i~~svig~~-~~ig~~~~i~~s~i~~~~~Ig~~~~i~~~ii~~~~~i~~~~~i 429 (451)
++..+..++ +.|++..+|...+..+...|.. ...++....+.+.|.+.+.+
T Consensus 48 ~~G~v~s~~~iiv~~~g~V~gei~a~~~iv~G-~v~Gni~~a~~Vei~~~g~v 99 (146)
T COG1664 48 FEGDVHSDGGIVVGESGRVEGEIEAEHLIVEG-KVEGNILAAERVELYPGGRV 99 (146)
T ss_pred EEEEEEeCCCEEECCccEEEEEEEeCEEEEee-EEEEEEEEeeEEEEcCCcEE
Confidence 333344444 6666666666544444444432 23333444444555544444
No 318
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=53.29 E-value=1.4e+02 Score=33.18 Aligned_cols=95 Identities=12% Similarity=0.120 Sum_probs=58.9
Q ss_pred ccccCCcc--hHHHHHHHHHHCCC--c--EEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCC-CChHHHHHHHHhc
Q 013012 28 LLPVANRP--VLSYVLEQLELSNI--K--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPED-VGTAGALRAIAHH 100 (451)
Q Consensus 28 llpv~gkp--li~~~l~~l~~~gi--~--~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~-~gt~~~l~~~~~~ 100 (451)
++|.-|.+ ++..++..+..... + +|+|+-... .+...++..+ .++.++..++. .+-++++-.+++.
T Consensus 265 iIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS--~D~t~~la~~-----~~v~yI~R~~n~~gKAGnLN~aL~~ 337 (852)
T PRK11498 265 FVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGG--REEFRQFAQE-----VGVKYIARPTHEHAKAGNINNALKY 337 (852)
T ss_pred EEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCC--ChHHHHHHHH-----CCcEEEEeCCCCcchHHHHHHHHHh
Confidence 45677876 67788888765432 2 455554322 2344454433 34666655443 4668888888888
Q ss_pred CCCCcEEEEcCCccCCCC-chHHHHHHHhc
Q 013012 101 LTAKDVLVVSGDLVSDVP-PGAVTAAHRRH 129 (451)
Q Consensus 101 l~~~~~lvl~~D~i~~~~-~~~~l~~~~~~ 129 (451)
...+.++++.+|.+...+ ++.++..+.+.
T Consensus 338 a~GEyIavlDAD~ip~pdfL~~~V~~f~~d 367 (852)
T PRK11498 338 AKGEFVAIFDCDHVPTRSFLQMTMGWFLKD 367 (852)
T ss_pred CCCCEEEEECCCCCCChHHHHHHHHHHHhC
Confidence 777789999999765544 45566555443
No 319
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=50.87 E-value=16 Score=32.65 Aligned_cols=103 Identities=23% Similarity=0.248 Sum_probs=51.9
Q ss_pred ccccCCc-chHHHHHHHHHHCC--CcEEEEEecCch--hhHHHHHhhhhhccCceeeEEEEcCCCCC---hHHHHHHHHh
Q 013012 28 LLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGAD--AALRVGGWISAAYVDRLHVEVATVPEDVG---TAGALRAIAH 99 (451)
Q Consensus 28 llpv~gk-pli~~~l~~l~~~g--i~~iivv~~~~~--~~~~i~~~~~~~~~~~~~~~i~~~~~~~g---t~~~l~~~~~ 99 (451)
++|.-|. +.|..+|+.+.... --+++|+.+..+ ..+.++++...+ . ..++.++..+...| .+.++..+.+
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~-~-~~~v~vi~~~~~~g~~~k~~a~n~~~~ 83 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARY-P-RVRVRVIRRPRNPGPGGKARALNEALA 83 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTT-G-G-GEEEEE----HHHHHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHc-C-CCceEEeecCCCCCcchHHHHHHHHHH
Confidence 4566665 88899999987642 345566654221 112233332222 1 23456655444333 5677778877
Q ss_pred cCCCCcEEEEcCCc-cCCCCchHHHHHHHhcCce
Q 013012 100 HLTAKDVLVVSGDL-VSDVPPGAVTAAHRRHDAV 132 (451)
Q Consensus 100 ~l~~~~~lvl~~D~-i~~~~~~~~l~~~~~~~~~ 132 (451)
....+.++++..|. +.+..+..+++.+...+..
T Consensus 84 ~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~ 117 (228)
T PF13641_consen 84 AARGDYILFLDDDTVLDPDWLERLLAAFADPGVG 117 (228)
T ss_dssp H---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--
T ss_pred hcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCC
Confidence 77667789999994 4444577788877444333
No 320
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=50.10 E-value=1.1e+02 Score=30.52 Aligned_cols=102 Identities=21% Similarity=0.253 Sum_probs=62.6
Q ss_pred ccccCCc-c-hHHHHHHHHHHCCCc--EEEEEecCchhhHHHHHhhhhhccCc-eeeEEEEc-CCCCChHHHHHHHHhcC
Q 013012 28 LLPVANR-P-VLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDR-LHVEVATV-PEDVGTAGALRAIAHHL 101 (451)
Q Consensus 28 llpv~gk-p-li~~~l~~l~~~gi~--~iivv~~~~~~~~~i~~~~~~~~~~~-~~~~i~~~-~~~~gt~~~l~~~~~~l 101 (451)
++|.-|. + .++.+++.+.+.... +++++.... .+...+.+.+..... ..+.+... ....|-+.++..++...
T Consensus 59 iiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~~~l~~~ 136 (439)
T COG1215 59 IIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGS--TDETYEILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKRA 136 (439)
T ss_pred EEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCC--ChhHHHHHHHHHhhcCcceEEEeccccCccchHHHHHHHhhc
Confidence 4566665 7 899999999887644 677776422 123333333221110 12233222 34578789999998887
Q ss_pred CCCcEEEEcCCccCC-CCchHHHHHHHhcCc
Q 013012 102 TAKDVLVVSGDLVSD-VPPGAVTAAHRRHDA 131 (451)
Q Consensus 102 ~~~~~lvl~~D~i~~-~~~~~~l~~~~~~~~ 131 (451)
..+-++++-+|.+.. ..+.+++........
T Consensus 137 ~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~ 167 (439)
T COG1215 137 KGDVVVILDADTVPEPDALRELVSPFEDPPV 167 (439)
T ss_pred CCCEEEEEcCCCCCChhHHHHHHhhhcCCCe
Confidence 666789999995554 457777777665443
No 321
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=49.44 E-value=1.4e+02 Score=28.01 Aligned_cols=37 Identities=11% Similarity=0.002 Sum_probs=27.6
Q ss_pred CChHHHHHHHHhcCCCCcEEEEcCCccCCC-CchHHHH
Q 013012 88 VGTAGALRAIAHHLTAKDVLVVSGDLVSDV-PPGAVTA 124 (451)
Q Consensus 88 ~gt~~~l~~~~~~l~~~~~lvl~~D~i~~~-~~~~~l~ 124 (451)
.|.+.+.-.+.+....+.++++.+|.+... .+..+++
T Consensus 74 f~~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 74 FSRAKARNIGAKYARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred cCHHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 588888777777777777999999965544 4666666
No 322
>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]
Probab=49.33 E-value=79 Score=23.77 Aligned_cols=51 Identities=20% Similarity=0.425 Sum_probs=35.6
Q ss_pred ccccccCCcchHHHHHHHHHH--CCCcEEEEEecCchhhHH--HHHhhhhhccCc
Q 013012 26 KALLPVANRPVLSYVLEQLEL--SNIKDLIVVVEGADAALR--VGGWISAAYVDR 76 (451)
Q Consensus 26 K~llpv~gkpli~~~l~~l~~--~gi~~iivv~~~~~~~~~--i~~~~~~~~~~~ 76 (451)
+.-+-++.||...|+|..+.+ .|.+++++-..+...+.. +.+.+.+.|...
T Consensus 4 envV~vG~KPvmNYVlAvlt~fn~g~~eViiKARGraIskAVDvaeivRnrf~p~ 58 (91)
T COG1581 4 ENVVLVGKKPVMNYVLAVLTQFNEGADEVIIKARGRAISKAVDVAEIVRNRFIPD 58 (91)
T ss_pred ccEEEEcCcchHHHHHHHHHHHHcCCCEEEEEecchhhHhhHhHHHHHHHhcCCC
Confidence 355668899999999999865 589999999876654432 233455555543
No 323
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=46.73 E-value=2.1e+02 Score=31.15 Aligned_cols=96 Identities=15% Similarity=0.224 Sum_probs=58.3
Q ss_pred ccccCCcc--hHHHHHHHHHHCCCc----EEEEEecCc-h---------------hhHHHHHhhhhhccCceeeEEEEcC
Q 013012 28 LLPVANRP--VLSYVLEQLELSNIK----DLIVVVEGA-D---------------AALRVGGWISAAYVDRLHVEVATVP 85 (451)
Q Consensus 28 llpv~gkp--li~~~l~~l~~~gi~----~iivv~~~~-~---------------~~~~i~~~~~~~~~~~~~~~i~~~~ 85 (451)
++|.-|.+ ++..+++.+.+.... +|+|+-..- + ..+.++++.. +.++.++..+
T Consensus 136 iIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~-----~~~v~yi~r~ 210 (713)
T TIGR03030 136 FIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCR-----KLGVNYITRP 210 (713)
T ss_pred EEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHH-----HcCcEEEECC
Confidence 56878875 567889888765432 556554320 0 0112333222 2356666544
Q ss_pred CC-CChHHHHHHHHhcCCCCcEEEEcCCccCCCC-chHHHHHHHh
Q 013012 86 ED-VGTAGALRAIAHHLTAKDVLVVSGDLVSDVP-PGAVTAAHRR 128 (451)
Q Consensus 86 ~~-~gt~~~l~~~~~~l~~~~~lvl~~D~i~~~~-~~~~l~~~~~ 128 (451)
+. .+-++++..+++..+.+.++++.+|.+...+ ++.++..+.+
T Consensus 211 ~n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~ 255 (713)
T TIGR03030 211 RNVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVE 255 (713)
T ss_pred CCCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHh
Confidence 44 3457888888888777789999999665544 5666666544
No 324
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=44.06 E-value=1e+02 Score=29.29 Aligned_cols=106 Identities=18% Similarity=0.099 Sum_probs=62.5
Q ss_pred cccCCcchHHHHHHHHHHCCCcEEEE-EecCchhhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcCCC--C-
Q 013012 29 LPVANRPVLSYVLEQLELSNIKDLIV-VVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA--K- 104 (451)
Q Consensus 29 lpv~gkpli~~~l~~l~~~gi~~iiv-v~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l~~--~- 104 (451)
+-.+...-+...++.+.+.......+ ++.... .+...+.+...+ ...+.++...+..|-+++.-.+...... .
T Consensus 10 v~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s-~d~~~~~~~~~~--~~~v~~i~~~~NlG~agg~n~g~~~a~~~~~~ 86 (305)
T COG1216 10 VTYNRGEDLVECLASLAAQTYPDDVIVVVDNGS-TDGSLEALKARF--FPNVRLIENGENLGFAGGFNRGIKYALAKGDD 86 (305)
T ss_pred EecCCHHHHHHHHHHHhcCCCCCcEEEEccCCC-CCCCHHHHHhhc--CCcEEEEEcCCCccchhhhhHHHHHHhcCCCc
Confidence 34456677888888887765433333 332111 112223333321 1247777777778877777655443322 2
Q ss_pred cEEEEcCCcc-CCCCchHHHHHHHhcCceEEEEE
Q 013012 105 DVLVVSGDLV-SDVPPGAVTAAHRRHDAVVTAMI 137 (451)
Q Consensus 105 ~~lvl~~D~i-~~~~~~~~l~~~~~~~~~~t~~~ 137 (451)
.+++++-|.+ .+..+.++++.+.+.+..+.+..
T Consensus 87 ~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~ 120 (305)
T COG1216 87 YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGP 120 (305)
T ss_pred EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeee
Confidence 5999999944 45568899999888766544443
No 325
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=39.85 E-value=2.4e+02 Score=26.91 Aligned_cols=106 Identities=19% Similarity=0.205 Sum_probs=58.2
Q ss_pred cccCC-cchHHHHHHHHHHC----CCcEEEEEecCchhhHHHHHhhhhhccCce-eeEEEE-cCCCCChHHHHHHHHhcC
Q 013012 29 LPVAN-RPVLSYVLEQLELS----NIKDLIVVVEGADAALRVGGWISAAYVDRL-HVEVAT-VPEDVGTAGALRAIAHHL 101 (451)
Q Consensus 29 lpv~g-kpli~~~l~~l~~~----gi~~iivv~~~~~~~~~i~~~~~~~~~~~~-~~~i~~-~~~~~gt~~~l~~~~~~l 101 (451)
+|.-| ...|..+|+.+.+. ...+|+|+-+.-. +...+...+....-. ...... .+...|.+.++..+....
T Consensus 37 IPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgSt--D~T~~ia~~~~~~v~~~~~~~~~~~~n~Gkg~A~~~g~~~a 114 (306)
T PRK13915 37 LPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGST--DATAERAAAAGARVVSREEILPELPPRPGKGEALWRSLAAT 114 (306)
T ss_pred EecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCc--cHHHHHHHHhcchhhcchhhhhccccCCCHHHHHHHHHHhc
Confidence 34444 47788888888652 2356666643211 112222222110000 011111 134578889998887776
Q ss_pred CCCcEEEEcCCcc--CCCCchHHHHHHH-hcCceEEEE
Q 013012 102 TAKDVLVVSGDLV--SDVPPGAVTAAHR-RHDAVVTAM 136 (451)
Q Consensus 102 ~~~~~lvl~~D~i--~~~~~~~~l~~~~-~~~~~~t~~ 136 (451)
..+.++++.+|.. .+..+..+++... +.+.++...
T Consensus 115 ~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g 152 (306)
T PRK13915 115 TGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKA 152 (306)
T ss_pred CCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEE
Confidence 6677999999964 4556788888765 344555443
No 326
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=38.40 E-value=3.2e+02 Score=25.20 Aligned_cols=100 Identities=11% Similarity=0.092 Sum_probs=51.9
Q ss_pred ccccCCcc--hHHHHHHHHHH----CC---CcEEEEEecCchhhH-HHHH--h---hhhhccCceeeEEEEcCCCCCh-H
Q 013012 28 LLPVANRP--VLSYVLEQLEL----SN---IKDLIVVVEGADAAL-RVGG--W---ISAAYVDRLHVEVATVPEDVGT-A 91 (451)
Q Consensus 28 llpv~gkp--li~~~l~~l~~----~g---i~~iivv~~~~~~~~-~i~~--~---~~~~~~~~~~~~i~~~~~~~gt-~ 91 (451)
|+|+.|.+ ++.-+|+.+.+ .. --+|+++ .+-...+ .+.. . +.+.+.....+.+...++..|- +
T Consensus 4 liP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vl-dD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~Ka 82 (254)
T cd04191 4 VMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFIL-SDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRKA 82 (254)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEE-CCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCccH
Confidence 67888874 36677776653 22 2355444 3221111 1111 0 1122222334555554444443 4
Q ss_pred HHHHHHHhcC--CCCcEEEEcCCccC-CCCchHHHHHHHh
Q 013012 92 GALRAIAHHL--TAKDVLVVSGDLVS-DVPPGAVTAAHRR 128 (451)
Q Consensus 92 ~~l~~~~~~l--~~~~~lvl~~D~i~-~~~~~~~l~~~~~ 128 (451)
+.|..++... ..+.++++-+|.+. +..+..++..+.+
T Consensus 83 g~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~ 122 (254)
T cd04191 83 GNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEA 122 (254)
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 5565555542 33679999999554 4457777777653
No 327
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=33.20 E-value=1.9e+02 Score=26.00 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=40.5
Q ss_pred EEEEecCchhhHHHHHhhhhhcc-CceeeEEEEcCCCCChHHHHHHHHhcCCCCcEEEEcCC-ccCCCC-chHHHHHHHh
Q 013012 52 LIVVVEGADAALRVGGWISAAYV-DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD-LVSDVP-PGAVTAAHRR 128 (451)
Q Consensus 52 iivv~~~~~~~~~i~~~~~~~~~-~~~~~~i~~~~~~~gt~~~l~~~~~~l~~~~~lvl~~D-~i~~~~-~~~~l~~~~~ 128 (451)
|+++++.+...++...++.+... ....+.+.......+.+.+.-++++..+.+.++.+.-| .+.+.+ +..+++...+
T Consensus 3 iI~c~n~~~~~~~~~~~i~~~~~~~~~~i~i~~~~~~~s~~~~yN~a~~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~ 82 (217)
T PF13712_consen 3 IIICVNDEELYEECLRSIKRLIGPPGELIEIDNVRNAKSMAAAYNEAMEKAKAKYLVFLHQDVFIINENWLEDILEIFEE 82 (217)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT--TEEEEEEE-SSS-S-TTTHHHHHGGG--SSEEEEEETTEE-SSHHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHhhCCCCceEEEEeccCCCcCHHHHHHHHHHhCCCCEEEEEeCCeEEcchhHHHHHHHHHhh
Confidence 55556544433344444544321 22235555555667888888888887765667778888 444544 5667766633
No 328
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=32.29 E-value=1e+02 Score=23.36 Aligned_cols=33 Identities=30% Similarity=0.577 Sum_probs=26.7
Q ss_pred cccCCcchHHHHHHHHHH--CCCcEEEEEecCchh
Q 013012 29 LPVANRPVLSYVLEQLEL--SNIKDLIVVVEGADA 61 (451)
Q Consensus 29 lpv~gkpli~~~l~~l~~--~gi~~iivv~~~~~~ 61 (451)
+-+++||+..|++..+.+ .|.+++++-..+...
T Consensus 4 i~vG~KPvmnYVlavlt~fn~g~~eV~iKarG~aI 38 (87)
T TIGR00285 4 VYIGNKPVMNYVLAVLTQLNSGADEVIIKARGRAI 38 (87)
T ss_pred EEEcCCcHHHHHHHHHHHHhCCCCeEEEEEecchh
Confidence 357899999999999975 578999998876543
No 329
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=31.79 E-value=2.1e+02 Score=28.52 Aligned_cols=129 Identities=14% Similarity=0.158 Sum_probs=69.8
Q ss_pred ceEEEEecCCCCCCCCCCCCCCcccccccC-CcchHHHHHHHHHH----CCCcEEEEEecCchhhHHHHHhhhhhccCce
Q 013012 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL----SNIKDLIVVVEGADAALRVGGWISAAYVDRL 77 (451)
Q Consensus 3 ~~avIlAgG~g~Rl~pl~~~~~pK~llpv~-gkpli~~~l~~l~~----~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~ 77 (451)
+.++=|-||.|+-| +-..||.+++|- |.+.++-++.+... .+++-=.++-+.-...+..+.++.++...+.
T Consensus 104 LavlKLNGGlGttm----Gc~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~kv 179 (498)
T KOG2638|consen 104 LAVLKLNGGLGTTM----GCKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGSKV 179 (498)
T ss_pred eEEEEecCCcCCcc----ccCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCCce
Confidence 44566889999999 778999999996 56777766555432 3444333443322223345555555443332
Q ss_pred eeEEEEc-------------------C---C---CCChH---HHHHHH--Hhc-C--CCCcEEEEcCCccCCCCchHHHH
Q 013012 78 HVEVATV-------------------P---E---DVGTA---GALRAI--AHH-L--TAKDVLVVSGDLVSDVPPGAVTA 124 (451)
Q Consensus 78 ~~~i~~~-------------------~---~---~~gt~---~~l~~~--~~~-l--~~~~~lvl~~D~i~~~~~~~~l~ 124 (451)
++.-..| + + +.|.+ ++++.. ++. + ..+.++|-+.|.+...-=-.+++
T Consensus 180 ~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~ILn 259 (498)
T KOG2638|consen 180 DIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLNILN 259 (498)
T ss_pred eEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHHHHH
Confidence 2211110 0 0 12443 333321 222 1 24678899999665543334667
Q ss_pred HHHhcCceEEE
Q 013012 125 AHRRHDAVVTA 135 (451)
Q Consensus 125 ~~~~~~~~~t~ 135 (451)
+..+.+....+
T Consensus 260 ~~i~~~~ey~M 270 (498)
T KOG2638|consen 260 HVINNNIEYLM 270 (498)
T ss_pred HHhcCCCceEE
Confidence 66666555443
No 330
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=30.08 E-value=93 Score=30.38 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=44.1
Q ss_pred CCCCCCCCCCcccccccCCc-chHHHHHHHHHHC-CCcEEEEEecCchhhHHHHHhhhh
Q 013012 15 KLVPLVSKEVPKALLPVANR-PVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISA 71 (451)
Q Consensus 15 Rl~pl~~~~~pK~llpv~gk-pli~~~l~~l~~~-gi~~iivv~~~~~~~~~i~~~~~~ 71 (451)
.|.|| ....+.-++.|-++ ..+.++|+.|+++ ||++..++.++....+++.+.+.+
T Consensus 24 ~f~~l-~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~~ 81 (356)
T PF05060_consen 24 KFGPL-ANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQS 81 (356)
T ss_pred hcCCC-CCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHHh
Confidence 45566 55677888889998 7889999999875 899999999876667777777654
No 331
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=29.86 E-value=2.4e+02 Score=21.12 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=40.5
Q ss_pred cchHHHHHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCC---ChHHHHHHH-Hhc-CCCCcEEE
Q 013012 34 RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDV---GTAGALRAI-AHH-LTAKDVLV 108 (451)
Q Consensus 34 kpli~~~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~---gt~~~l~~~-~~~-l~~~~~lv 108 (451)
-++|...|......|+++++|+-+... +...+++.+. .. +.+.....+. ......+.. .+. ...+.++.
T Consensus 4 ~~~L~~wl~~~~~lG~d~i~i~d~~s~--D~t~~~l~~~--~~--v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~ 77 (97)
T PF13704_consen 4 ADYLPEWLAHHLALGVDHIYIYDDGST--DGTREILRAL--PG--VGIIRWVDPYRDERRQRAWRNALIERAFDADWVLF 77 (97)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCCC--ccHHHHHHhC--CC--cEEEEeCCCccchHHHHHHHHHHHHhCCCCCEEEE
Confidence 378888899988999999999876432 2233444332 12 3443333221 122222222 222 23456888
Q ss_pred EcCC
Q 013012 109 VSGD 112 (451)
Q Consensus 109 l~~D 112 (451)
+-+|
T Consensus 78 ~D~D 81 (97)
T PF13704_consen 78 LDAD 81 (97)
T ss_pred Eeee
Confidence 8898
No 332
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=26.13 E-value=2.2e+02 Score=28.12 Aligned_cols=76 Identities=9% Similarity=0.135 Sum_probs=38.8
Q ss_pred HHHHHHHCC-CcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCC----hHHHHHHH---HhcCCCCcEEEEcC
Q 013012 40 VLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVG----TAGALRAI---AHHLTAKDVLVVSG 111 (451)
Q Consensus 40 ~l~~l~~~g-i~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~g----t~~~l~~~---~~~l~~~~~lvl~~ 111 (451)
++..+.+.+ +..++++++++...+....++......+....+.......+ |+..+... ++.. .-|++++.|
T Consensus 22 li~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~~~-kPD~VlVhG 100 (383)
T COG0381 22 LVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLEEE-KPDLVLVHG 100 (383)
T ss_pred HHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHHHhh-CCCEEEEeC
Confidence 346666665 99999999977544555555543222211111111111222 33333322 2333 346999999
Q ss_pred CccCC
Q 013012 112 DLVSD 116 (451)
Q Consensus 112 D~i~~ 116 (451)
|.-+.
T Consensus 101 DT~t~ 105 (383)
T COG0381 101 DTNTT 105 (383)
T ss_pred CcchH
Confidence 95443
No 333
>PF13562 NTP_transf_4: Sugar nucleotidyl transferase
Probab=26.05 E-value=2.1e+02 Score=24.29 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=34.5
Q ss_pred EEEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEEe
Q 013012 6 VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56 (451)
Q Consensus 6 vIlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv~ 56 (451)
|+.=+..-.+|.|| |.++|-.=+.+|-.++-+++-..+- ..++..++
T Consensus 3 ilFdd~~~~~L~Pl-t~tRPV~dlr~Gi~TlrEkwe~~l~---~~~~s~~t 49 (156)
T PF13562_consen 3 ILFDDEARNNLLPL-TFTRPVADLRCGILTLREKWEKYLG---AATVSFHT 49 (156)
T ss_pred EEEcCCChhcccCc-ccccCHHHHhhhHHHHHHHHHHHcC---CCceEEEh
Confidence 44444456689999 9999999999998899988877764 22454444
No 334
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=25.65 E-value=2e+02 Score=23.20 Aligned_cols=84 Identities=10% Similarity=0.047 Sum_probs=35.8
Q ss_pred HHHHHHHCCCcEEEEEecCchhhHHHHHhhhhhccCceeeEEEEcCCCCChHHHHHHHHhcC--CCCcEEEEcCC--ccC
Q 013012 40 VLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL--TAKDVLVVSGD--LVS 115 (451)
Q Consensus 40 ~l~~l~~~gi~~iivv~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~gt~~~l~~~~~~l--~~~~~lvl~~D--~i~ 115 (451)
+|+.+.+...-+++|............. + .. ...+.+..+ ...+.+..+..+.+.+ ..+.++++.+| .+.
T Consensus 1 tl~~~~~~~~~~~~l~~~~~~~~~~~~~-~--~~--~~~~~~~~Q-~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~ 74 (122)
T PF09837_consen 1 TLAALAQADGADVVLAYTPDGDHAAFRQ-L--WL--PSGFSFFPQ-QGGDLGERMANAFQQAARGYEPVVLIGSDCPDLT 74 (122)
T ss_dssp -------TSSSEEEEEE----TTHHHHH-H--HH---TTSEEEE---SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--
T ss_pred CccccccCCCcCEEEEEcCCccHHHHhc-c--cc--CCCCEEeec-CCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCC
Confidence 4667777766777777764432222211 0 11 113566655 3344455555554333 33579999999 666
Q ss_pred CCCchHHHHHHHhc
Q 013012 116 DVPPGAVTAAHRRH 129 (451)
Q Consensus 116 ~~~~~~~l~~~~~~ 129 (451)
...+...++...+.
T Consensus 75 ~~~l~~A~~~L~~~ 88 (122)
T PF09837_consen 75 PDDLEQAFEALQRH 88 (122)
T ss_dssp HHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHhccC
Confidence 66777776665544
No 335
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=25.15 E-value=97 Score=30.73 Aligned_cols=18 Identities=6% Similarity=-0.005 Sum_probs=10.1
Q ss_pred ccCCCCchHHHHHHHhcC
Q 013012 113 LVSDVPPGAVTAAHRRHD 130 (451)
Q Consensus 113 ~i~~~~~~~~l~~~~~~~ 130 (451)
+-++.+-..+++.+....
T Consensus 161 fnTdedT~kil~ky~~~k 178 (498)
T KOG2638|consen 161 FNTDEDTQKILKKYAGSK 178 (498)
T ss_pred cccchHHHHHHHHhcCCc
Confidence 445556666666655443
No 336
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=21.17 E-value=1.6e+02 Score=22.87 Aligned_cols=48 Identities=23% Similarity=0.410 Sum_probs=35.9
Q ss_pred EEecCCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHCCCcEEEEE
Q 013012 7 VLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55 (451)
Q Consensus 7 IlAgG~g~Rl~pl~~~~~pK~llpv~gkpli~~~l~~l~~~gi~~iivv 55 (451)
++.|..|..-.|| .+..-.++.-+..+..++.+++.|.++|-+.|.+.
T Consensus 47 ilPg~~~PTVs~l-~~~~w~AV~~vv~~~~v~~~~~~Lk~~GA~~Ilv~ 94 (100)
T TIGR03455 47 LLPGLEGPTVSPL-ADEGWVAVHAVVDEKVVNELIDKLKAAGARDILVL 94 (100)
T ss_pred hcCCCCCCCcCcC-CCCCeEEEEEEEcHHHHHHHHHHHHHcCCCeEEEe
Confidence 4566667777777 44444455566788999999999999999988875
Done!