BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013013
         (451 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BON|A Chain A, Structure Of An Escherichia Coli Lipid Kinase (Yegs)
 pdb|2BON|B Chain B, Structure Of An Escherichia Coli Lipid Kinase (Yegs)
          Length = 332

 Score = 37.7 bits (86), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 151 IVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAV 210
           ++  GGDGT+  V  S   +  +G + +P + I+PLGT ND + S G     P A   A+
Sbjct: 86  VIAGGGDGTINEV--STALIQCEGDD-IPALGILPLGTANDFATSVG----IPEALDKAL 138

Query: 211 KRTLQ-RASAGPICRLDSWHAVIQMPSG 237
           K  +   A A  + +++     I M +G
Sbjct: 139 KLAIAGDAIAIDMAQVNKQTCFINMATG 166


>pdb|3T5P|A Chain A, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|B Chain B, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|C Chain C, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|D Chain D, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|E Chain E, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|F Chain F, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|G Chain G, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|H Chain H, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|I Chain I, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|J Chain J, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|K Chain K, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|L Chain L, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
          Length = 306

 Score = 37.7 bits (86), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 8/65 (12%)

Query: 136 ELGD---FCAKDTRQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDL 192
           E GD   +C +   +   I+V GGDGTV      +  L     E  P +AIIP GT ND 
Sbjct: 53  EQGDATKYCQEFASKVDLIIVFGGDGTVFECTNGLAPL-----EIRPTLAIIPGGTCNDF 107

Query: 193 SRSFG 197
           SR+ G
Sbjct: 108 SRTLG 112


>pdb|3S40|A Chain A, The Crystal Structure Of A Diacylglycerol Kinases From
           Bacillus Anthracis Str. Sterne
 pdb|3S40|B Chain B, The Crystal Structure Of A Diacylglycerol Kinases From
           Bacillus Anthracis Str. Sterne
 pdb|3S40|C Chain C, The Crystal Structure Of A Diacylglycerol Kinases From
           Bacillus Anthracis Str. Sterne
 pdb|3S40|D Chain D, The Crystal Structure Of A Diacylglycerol Kinases From
           Bacillus Anthracis Str. Sterne
          Length = 304

 Score = 37.4 bits (85), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 8/65 (12%)

Query: 136 ELGD---FCAKDTRQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDL 192
           E GD   +C +   +   I+V GGDGTV      +  L     E  P +AIIP GT ND 
Sbjct: 49  EQGDATKYCQEFASKVDLIIVFGGDGTVFECTNGLAPL-----EIRPTLAIIPGGTCNDF 103

Query: 193 SRSFG 197
           SR+ G
Sbjct: 104 SRTLG 108


>pdb|2JGR|A Chain A, Crystal Structure Of Yegs In Complex With Adp
          Length = 299

 Score = 36.2 bits (82), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 151 IVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAV 210
           ++  GGDGT+  V  S   +  +G + +P + I+PLGT ND + S G   +   A K A+
Sbjct: 61  VIAGGGDGTINEV--STALIQCEGDD-IPALGILPLGTANDFATSVGIPEALDKALKLAI 117


>pdb|2QV7|A Chain A, Crystal Structure Of Diacylglycerol Kinase Dgkb In Complex
           With Adp And Mg
 pdb|2QVL|A Chain A, Crystal Structure Of Diacylglycerol Kinase
          Length = 337

 Score = 34.3 bits (77), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 151 IVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSF 196
           ++ AGGDGT+  V+  + E  K  R   P + +IP GT ND  R+ 
Sbjct: 84  LIAAGGDGTLNEVVNGIAE--KPNR---PKLGVIPXGTVNDFGRAL 124


>pdb|4A5A|A Chain A, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
           GONDII Nucleoside Triphosphate Diphosphohydrolase 3
           (Ntpdase3) In Complex With Magnesium And Amppnp
 pdb|4A5A|B Chain B, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
           GONDII Nucleoside Triphosphate Diphosphohydrolase 3
           (Ntpdase3) In Complex With Magnesium And Amppnp
 pdb|4A5A|C Chain C, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
           GONDII Nucleoside Triphosphate Diphosphohydrolase 3
           (Ntpdase3) In Complex With Magnesium And Amppnp
 pdb|4A5A|D Chain D, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
           GONDII Nucleoside Triphosphate Diphosphohydrolase 3
           (Ntpdase3) In Complex With Magnesium And Amppnp
          Length = 611

 Score = 32.3 bits (72), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 11/135 (8%)

Query: 188 TGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPPHSLK 247
           T N LSR  G   +     +  VK++  R     +  +    A I  P  E    P S++
Sbjct: 219 TLNHLSRRLGEDPARSMIDEYGVKQS--RNDLAGVVEVGGASAQIVFPLQEGTVLPSSVR 276

Query: 248 PTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPIS 307
                     LQ E  LPE+    + V  ++  +GM +        L +   +L  G  S
Sbjct: 277 AV-------NLQRERLLPERYPSADVVSVSFMQLGMASSAGLFLKELCSNDEFLQGGICS 329

Query: 308 NKLIYSGY--SCTQG 320
           N  ++ G+  SC+ G
Sbjct: 330 NPCLFKGFQQSCSAG 344


>pdb|2P1R|A Chain A, Crystal Structure Of Salmonella Typhimurium Yegs, A
           Putative Lipid Kinase Homologous To Eukaryotic
           Sphingosine And Diacylglycerol Kinases.
 pdb|2P1R|B Chain B, Crystal Structure Of Salmonella Typhimurium Yegs, A
           Putative Lipid Kinase Homologous To Eukaryotic
           Sphingosine And Diacylglycerol Kinases.
 pdb|2P1R|C Chain C, Crystal Structure Of Salmonella Typhimurium Yegs, A
           Putative Lipid Kinase Homologous To Eukaryotic
           Sphingosine And Diacylglycerol Kinases.
 pdb|2P1R|D Chain D, Crystal Structure Of Salmonella Typhimurium Yegs, A
           Putative Lipid Kinase Homologous To Eukaryotic
           Sphingosine And Diacylglycerol Kinases
          Length = 299

 Score = 32.0 bits (71), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 151 IVVAGGDGTVGWVLGSVGELNKQGREPVPP-VAIIPLGTGNDLSRSFGWGGSFPFAWKSA 209
           ++  GGDGT+  V  ++ ++    R+ V P + ++PLGT ND + S G   +   A K A
Sbjct: 61  VIAGGGDGTINEVSTALIQI----RDGVAPALGLLPLGTANDFATSAGIPEALDKALKLA 116

Query: 210 V 210
           +
Sbjct: 117 I 117


>pdb|4A5B|A Chain A, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
           GONDII Nucleoside Triphosphate Diphosphohydrolase 1
           (Ntpdase1)
 pdb|4A5B|B Chain B, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
           GONDII Nucleoside Triphosphate Diphosphohydrolase 1
           (Ntpdase1)
          Length = 611

 Score = 32.0 bits (71), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 11/135 (8%)

Query: 188 TGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPPHSLK 247
           T N LSR  G   +     +  VK +  R     +  +    A I  P  E    P S++
Sbjct: 219 TLNHLSRRLGEDPARSMIDEYGVKHS--RNDLAGVVEVGGASAQIVFPLQEGTVLPSSVR 276

Query: 248 PTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPIS 307
                     LQ E  LPE+    + V  ++  +GM +        L +   +L  G  S
Sbjct: 277 AV-------NLQRERLLPERYPSADVVSVSFMQLGMASSAGLFLKELCSNDEFLQGGICS 329

Query: 308 NKLIYSGY--SCTQG 320
           N  ++ G+  SC+ G
Sbjct: 330 NPCLFKGFQQSCSAG 344


>pdb|4A57|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
           Triphosphate Diphosphohydrolase 3 (Ntpdase3)
 pdb|4A57|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
           Triphosphate Diphosphohydrolase 3 (Ntpdase3)
 pdb|4A57|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
           Triphosphate Diphosphohydrolase 3 (Ntpdase3)
 pdb|4A57|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
           Triphosphate Diphosphohydrolase 3 (Ntpdase3)
 pdb|4A59|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
           Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
           With Amp
 pdb|4A59|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
           Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
           With Amp
 pdb|4A59|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
           Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
           With Amp
 pdb|4A59|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
           Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
           With Amp
          Length = 611

 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 11/135 (8%)

Query: 188 TGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPPHSLK 247
           T N LSR  G   +     +  VK+   R     +  +    A I  P  E    P S++
Sbjct: 219 TLNHLSRRLGEDPARCMIDEYGVKQC--RNDLAGVVEVGGASAQIVFPLQEGTVLPSSVR 276

Query: 248 PTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPIS 307
                     LQ E  LPE+    + V  ++  +GM +        L +   +L  G  S
Sbjct: 277 AV-------NLQRERLLPERYPSADVVSVSFMQLGMASSAGLFLKELCSNDEFLQGGICS 329

Query: 308 NKLIYSGY--SCTQG 320
           N  ++ G+  SC+ G
Sbjct: 330 NPCLFKGFQQSCSAG 344


>pdb|1ZOW|A Chain A, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
           Protein Synthase Iii
 pdb|1ZOW|B Chain B, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
           Protein Synthase Iii
 pdb|1ZOW|C Chain C, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
           Protein Synthase Iii
 pdb|1ZOW|D Chain D, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
           Protein Synthase Iii
 pdb|3IL7|A Chain A, Crystal Structure Of S. Aureus Fabh
 pdb|3IL7|B Chain B, Crystal Structure Of S. Aureus Fabh
          Length = 313

 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 24/112 (21%)

Query: 75  GVQPPEAPMVVFINSRSGGRHGPELKERLQELMGKEQV-----------FDLSEVKPHEF 123
           G+QP +  M++ + + +G    P +   LQE +G  +V           F  S +   ++
Sbjct: 67  GIQPEDIDMII-VATATGDMPFPTVANMLQERLGTGKVASMDQLAACSGFMYSMITAKQY 125

Query: 124 VQYG------LACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGE 169
           VQ G      +   +KL+++ D   + T       V  GDG    ++G V E
Sbjct: 126 VQSGDYHNILVVGADKLSKITDLTDRST------AVLFGDGAGAVIIGEVSE 171


>pdb|3NIP|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
           Guanidinopropionase Complexed With 1,6-Diaminohexane
 pdb|3NIP|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa
           Guanidinopropionase Complexed With 1,6-Diaminohexane
 pdb|3NIP|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa
           Guanidinopropionase Complexed With 1,6-Diaminohexane
 pdb|3NIP|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa
           Guanidinopropionase Complexed With 1,6-Diaminohexane
 pdb|3NIP|E Chain E, Crystal Structure Of Pseudomonas Aeruginosa
           Guanidinopropionase Complexed With 1,6-Diaminohexane
 pdb|3NIP|F Chain F, Crystal Structure Of Pseudomonas Aeruginosa
           Guanidinopropionase Complexed With 1,6-Diaminohexane
 pdb|3NIQ|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
           Guanidinopropionase
 pdb|3NIQ|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa
           Guanidinopropionase
          Length = 326

 Score = 30.4 bits (67), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 88  NSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYG 127
            +R+G RHGP     L  LM K  V  +S + P++ V+ G
Sbjct: 49  TNRAGARHGPREVRNLSSLMRK--VHHVSRIAPYDLVRVG 86


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,199,787
Number of Sequences: 62578
Number of extensions: 625937
Number of successful extensions: 1330
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1325
Number of HSP's gapped (non-prelim): 13
length of query: 451
length of database: 14,973,337
effective HSP length: 102
effective length of query: 349
effective length of database: 8,590,381
effective search space: 2998042969
effective search space used: 2998042969
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)