Query 013013
Match_columns 451
No_of_seqs 226 out of 1671
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:39:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013013.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013013hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1169 Diacylglycerol kinase 100.0 5.5E-69 1.2E-73 563.8 23.6 388 10-443 192-594 (634)
2 KOG0782 Predicted diacylglycer 100.0 6E-61 1.3E-65 487.5 15.6 358 29-443 301-671 (1004)
3 PRK12361 hypothetical protein; 100.0 1E-39 2.3E-44 351.2 21.9 326 16-443 167-517 (547)
4 PRK11914 diacylglycerol kinase 100.0 1.2E-37 2.6E-42 312.3 24.7 261 80-442 8-278 (306)
5 PRK13057 putative lipid kinase 100.0 1.2E-37 2.7E-42 309.5 24.5 251 84-443 1-260 (287)
6 PRK13059 putative lipid kinase 100.0 5.3E-37 1.1E-41 306.3 24.1 257 81-443 2-268 (295)
7 KOG1170 Diacylglycerol kinase 100.0 3.6E-39 7.8E-44 339.0 6.4 384 6-443 130-767 (1099)
8 PRK13055 putative lipid kinase 100.0 5.9E-37 1.3E-41 311.0 22.2 261 80-442 2-275 (334)
9 PRK13337 putative lipid kinase 100.0 7.9E-37 1.7E-41 306.2 22.2 259 81-443 2-269 (304)
10 PRK00861 putative lipid kinase 100.0 2.1E-36 4.6E-41 302.4 24.2 258 80-443 2-272 (300)
11 TIGR03702 lip_kinase_YegS lipi 100.0 1.3E-36 2.8E-41 303.1 22.2 258 82-443 1-263 (293)
12 PRK13054 lipid kinase; Reviewe 100.0 4.1E-36 8.8E-41 300.5 22.9 260 79-443 2-269 (300)
13 COG1597 LCB5 Sphingosine kinas 100.0 1.5E-35 3.2E-40 296.3 22.6 260 80-443 2-271 (301)
14 TIGR00147 lipid kinase, YegS/R 100.0 3.3E-35 7.2E-40 292.6 22.8 260 80-443 1-270 (293)
15 PLN02958 diacylglycerol kinase 100.0 1.8E-34 3.9E-39 305.0 24.7 276 78-436 109-427 (481)
16 PF00609 DAGK_acc: Diacylglyce 100.0 3.8E-32 8.2E-37 248.4 7.5 156 274-443 1-157 (161)
17 PLN02204 diacylglycerol kinase 100.0 7.4E-29 1.6E-33 262.8 23.0 193 76-321 155-414 (601)
18 KOG1116 Sphingosine kinase, in 99.9 9.6E-24 2.1E-28 220.2 17.0 172 75-297 174-346 (579)
19 PF00781 DAGK_cat: Diacylglyce 99.9 1.6E-22 3.6E-27 178.0 8.3 125 82-230 1-127 (130)
20 smart00046 DAGKc Diacylglycero 99.8 1.4E-20 3E-25 164.8 12.0 101 84-201 1-101 (124)
21 smart00045 DAGKa Diacylglycero 99.8 1.1E-19 2.4E-24 165.9 10.6 155 274-444 1-157 (160)
22 KOG1115 Ceramide kinase [Lipid 99.6 2.3E-15 5E-20 150.7 11.2 258 77-414 155-437 (516)
23 KOG4435 Predicted lipid kinase 99.2 4E-11 8.7E-16 120.4 11.5 136 75-227 55-195 (535)
24 PRK03708 ppnK inorganic polyph 98.3 5.9E-06 1.3E-10 82.2 11.5 123 81-232 1-124 (277)
25 PRK02645 ppnK inorganic polyph 98.2 9E-06 2E-10 82.0 11.5 125 80-233 3-128 (305)
26 COG3199 Predicted inorganic po 97.8 0.00015 3.3E-09 72.9 10.8 58 146-220 99-157 (355)
27 PRK03378 ppnK inorganic polyph 97.6 0.00078 1.7E-08 67.6 12.3 127 79-232 4-131 (292)
28 PRK01231 ppnK inorganic polyph 97.5 0.0011 2.3E-08 66.7 12.5 128 80-233 4-131 (295)
29 PF01513 NAD_kinase: ATP-NAD k 97.3 0.0012 2.6E-08 65.9 9.6 70 146-232 75-144 (285)
30 PRK14077 pnk inorganic polypho 97.0 0.011 2.4E-07 59.2 13.3 125 78-232 8-132 (287)
31 PRK03372 ppnK inorganic polyph 97.0 0.011 2.4E-07 59.7 13.0 127 77-232 2-140 (306)
32 PRK04539 ppnK inorganic polyph 96.7 0.027 5.8E-07 56.7 12.8 129 78-232 3-136 (296)
33 PRK02155 ppnK NAD(+)/NADH kina 96.7 0.033 7.1E-07 55.9 13.3 128 80-233 5-132 (291)
34 PRK01911 ppnK inorganic polyph 96.6 0.032 6.8E-07 56.1 13.0 124 81-233 1-133 (292)
35 PRK02649 ppnK inorganic polyph 96.6 0.035 7.7E-07 56.1 13.3 130 81-233 2-137 (305)
36 PRK03501 ppnK inorganic polyph 96.5 0.034 7.4E-07 55.0 11.9 105 82-232 4-109 (264)
37 PLN02935 Bifunctional NADH kin 96.3 0.07 1.5E-06 57.0 13.6 134 79-232 193-330 (508)
38 PRK14076 pnk inorganic polypho 95.7 0.13 2.9E-06 56.3 13.1 126 78-232 288-416 (569)
39 PRK14075 pnk inorganic polypho 95.4 0.54 1.2E-05 46.3 15.0 68 146-233 40-107 (256)
40 PRK00561 ppnK inorganic polyph 95.1 0.26 5.6E-06 48.7 11.7 35 147-188 33-67 (259)
41 PRK04885 ppnK inorganic polyph 95.1 0.26 5.6E-06 48.9 11.6 104 82-232 2-105 (265)
42 PLN02727 NAD kinase 94.8 0.25 5.4E-06 56.2 11.5 116 78-222 676-801 (986)
43 PRK01185 ppnK inorganic polyph 94.2 0.7 1.5E-05 46.0 12.2 117 81-232 1-117 (271)
44 PLN02929 NADH kinase 93.5 0.38 8.3E-06 48.5 8.9 76 146-232 63-149 (301)
45 PRK02231 ppnK inorganic polyph 93.2 0.44 9.5E-06 47.4 8.8 69 147-232 42-111 (272)
46 PRK04761 ppnK inorganic polyph 92.6 0.23 5E-06 48.7 5.7 37 145-188 23-59 (246)
47 COG0061 nadF NAD kinase [Coenz 91.3 3.7 8.1E-05 40.9 12.9 71 146-233 54-124 (281)
48 KOG4180 Predicted kinase [Gene 86.8 0.7 1.5E-05 46.6 3.8 76 145-234 103-180 (395)
49 cd07766 DHQ_Fe-ADH Dehydroquin 85.8 2.4 5.3E-05 42.9 7.3 92 80-189 23-117 (332)
50 cd08186 Fe-ADH8 Iron-containin 81.9 6.3 0.00014 41.0 8.6 105 80-196 26-147 (383)
51 cd08172 GlyDH-like1 Glycerol d 81.2 9.5 0.00021 39.0 9.5 93 81-194 24-118 (347)
52 cd08197 DOIS 2-deoxy-scyllo-in 80.7 6.1 0.00013 40.8 7.9 99 81-191 24-125 (355)
53 cd08170 GlyDH Glycerol dehydro 80.0 8.3 0.00018 39.5 8.6 94 81-194 23-119 (351)
54 PF10254 Pacs-1: PACS-1 cytoso 78.3 8.1 0.00018 40.6 7.9 51 147-198 75-128 (414)
55 cd08180 PDD 1,3-propanediol de 78.2 8.9 0.00019 39.0 8.1 101 81-194 23-127 (332)
56 PRK09423 gldA glycerol dehydro 78.1 16 0.00034 37.8 10.0 94 81-194 30-126 (366)
57 cd08550 GlyDH-like Glycerol_de 78.1 11 0.00023 38.7 8.7 94 81-194 23-119 (349)
58 COG1454 EutG Alcohol dehydroge 76.9 12 0.00026 39.0 8.7 107 79-198 28-150 (377)
59 cd08169 DHQ-like Dehydroquinat 76.9 11 0.00023 38.8 8.3 99 80-193 23-126 (344)
60 cd08183 Fe-ADH2 Iron-containin 76.7 15 0.00034 37.9 9.5 98 81-194 23-139 (374)
61 cd08194 Fe-ADH6 Iron-containin 76.5 9.3 0.0002 39.6 7.8 100 81-193 24-139 (375)
62 cd08181 PPD-like 1,3-propanedi 76.0 9.2 0.0002 39.4 7.6 103 81-195 26-143 (357)
63 TIGR03405 Phn_Fe-ADH phosphona 75.5 18 0.0004 37.1 9.6 103 81-195 24-145 (355)
64 cd08171 GlyDH-like2 Glycerol d 75.2 7.2 0.00016 39.9 6.6 93 81-193 23-119 (345)
65 cd08551 Fe-ADH iron-containing 74.4 10 0.00022 39.1 7.4 104 80-196 23-142 (370)
66 cd08187 BDH Butanol dehydrogen 74.3 14 0.00031 38.3 8.6 104 81-196 29-148 (382)
67 KOG2178 Predicted sugar kinase 74.3 5.2 0.00011 41.6 5.1 61 146-223 167-227 (409)
68 cd08173 Gro1PDH Sn-glycerol-1- 72.5 20 0.00044 36.5 9.1 88 81-189 26-113 (339)
69 cd08176 LPO Lactadehyde:propan 71.8 12 0.00026 38.7 7.3 104 81-197 29-148 (377)
70 cd08179 NADPH_BDH NADPH-depend 71.6 18 0.00039 37.4 8.6 101 81-194 24-144 (375)
71 PF00465 Fe-ADH: Iron-containi 71.3 11 0.00025 38.7 7.0 103 82-197 23-142 (366)
72 cd08185 Fe-ADH1 Iron-containin 71.3 15 0.00033 38.0 7.9 105 81-197 26-151 (380)
73 cd08195 DHQS Dehydroquinate sy 69.5 17 0.00037 37.1 7.8 95 80-186 24-119 (345)
74 cd08189 Fe-ADH5 Iron-containin 69.3 23 0.0005 36.6 8.7 103 80-195 26-145 (374)
75 PRK00002 aroB 3-dehydroquinate 68.2 21 0.00045 36.8 8.0 98 80-192 31-134 (358)
76 PRK15138 aldehyde reductase; P 68.2 23 0.0005 36.9 8.5 104 81-196 30-150 (387)
77 cd08177 MAR Maleylacetate redu 68.0 23 0.00051 36.0 8.4 90 81-190 24-114 (337)
78 cd08178 AAD_C C-terminal alcoh 65.0 29 0.00062 36.3 8.5 103 80-196 21-151 (398)
79 TIGR01357 aroB 3-dehydroquinat 64.4 26 0.00056 35.8 7.9 95 80-186 20-115 (344)
80 cd08182 HEPD Hydroxyethylphosp 63.9 28 0.00062 35.8 8.1 98 81-194 24-141 (367)
81 PRK06203 aroB 3-dehydroquinate 63.3 53 0.0011 34.4 10.0 105 80-192 42-153 (389)
82 PRK09860 putative alcohol dehy 63.0 36 0.00077 35.5 8.7 106 80-198 31-152 (383)
83 cd08549 G1PDH_related Glycerol 62.4 27 0.00058 35.6 7.5 89 81-187 25-113 (332)
84 cd08184 Fe-ADH3 Iron-containin 62.1 36 0.00079 35.0 8.4 48 147-195 81-142 (347)
85 PRK15454 ethanol dehydrogenase 61.2 47 0.001 34.8 9.2 104 81-197 50-169 (395)
86 cd08198 DHQS-like2 Dehydroquin 60.7 70 0.0015 33.3 10.2 100 80-187 30-134 (369)
87 cd08192 Fe-ADH7 Iron-containin 60.7 35 0.00076 35.2 8.1 101 81-194 25-145 (370)
88 PF00731 AIRC: AIR carboxylase 60.0 51 0.0011 29.9 8.0 81 92-189 8-89 (150)
89 TIGR02638 lactal_redase lactal 58.3 38 0.00082 35.1 7.9 104 80-196 29-150 (379)
90 cd08174 G1PDH-like Glycerol-1- 58.3 41 0.00088 34.1 8.0 34 147-187 75-108 (331)
91 PF13685 Fe-ADH_2: Iron-contai 57.4 19 0.00042 35.3 5.2 94 80-191 19-112 (250)
92 cd08193 HVD 5-hydroxyvalerate 56.8 42 0.00092 34.7 8.0 102 80-194 26-143 (376)
93 cd08191 HHD 6-hydroxyhexanoate 56.3 43 0.00094 34.8 8.0 101 81-195 23-140 (386)
94 PRK10624 L-1,2-propanediol oxi 56.2 45 0.00097 34.6 8.0 105 80-197 30-152 (382)
95 PRK00843 egsA NAD(P)-dependent 56.1 53 0.0011 33.7 8.5 90 81-191 35-124 (350)
96 TIGR02482 PFKA_ATP 6-phosphofr 54.2 55 0.0012 33.1 8.0 42 146-194 90-131 (301)
97 PTZ00286 6-phospho-1-fructokin 54.2 32 0.0007 36.9 6.6 51 146-198 175-228 (459)
98 cd08175 G1PDH Glycerol-1-phosp 53.9 36 0.00078 34.8 6.8 87 81-186 24-112 (348)
99 PLN00180 NDF6 (NDH-dependent f 53.4 3 6.4E-05 37.7 -1.1 16 152-167 129-144 (180)
100 cd08199 EEVS 2-epi-5-epi-valio 52.5 59 0.0013 33.5 8.1 96 79-186 25-122 (354)
101 cd08188 Fe-ADH4 Iron-containin 51.2 93 0.002 32.2 9.4 102 80-194 28-145 (377)
102 TIGR01162 purE phosphoribosyla 50.3 79 0.0017 28.9 7.6 76 97-189 11-87 (156)
103 PLN02834 3-dehydroquinate synt 49.9 1E+02 0.0022 32.8 9.6 97 80-187 100-198 (433)
104 PF00782 DSPc: Dual specificit 48.4 4.2 9.1E-05 35.0 -0.9 33 16-48 65-98 (133)
105 cd00763 Bacterial_PFK Phosphof 48.1 83 0.0018 32.0 8.2 40 146-193 91-130 (317)
106 TIGR02483 PFK_mixed phosphofru 47.8 85 0.0018 32.1 8.3 45 146-198 93-140 (324)
107 PRK06830 diphosphate--fructose 47.1 43 0.00094 35.7 6.2 51 146-198 171-224 (443)
108 cd00363 PFK Phosphofructokinas 45.7 86 0.0019 32.2 8.0 46 146-193 91-136 (338)
109 PRK10586 putative oxidoreducta 45.7 1.4E+02 0.003 30.9 9.6 91 81-193 35-127 (362)
110 PF12138 Spherulin4: Spherulat 45.4 18 0.0004 35.5 3.0 20 77-96 27-46 (253)
111 cd08190 HOT Hydroxyacid-oxoaci 45.3 1.1E+02 0.0024 32.2 9.0 102 81-195 24-147 (414)
112 PRK14021 bifunctional shikimat 44.8 1E+02 0.0022 33.8 8.8 43 147-194 269-313 (542)
113 smart00195 DSPc Dual specifici 43.5 5.9 0.00013 34.4 -0.8 32 17-48 71-103 (138)
114 PRK03202 6-phosphofructokinase 43.4 97 0.0021 31.6 7.9 40 146-193 92-131 (320)
115 COG2453 CDC14 Predicted protei 42.7 6.2 0.00013 36.6 -0.8 33 16-48 97-130 (180)
116 PF12219 End_tail_spike: Catal 42.5 14 0.00029 32.9 1.3 13 149-161 86-98 (160)
117 PLN02564 6-phosphofructokinase 40.8 1.1E+02 0.0023 33.2 8.0 51 146-198 175-228 (484)
118 cd00764 Eukaryotic_PFK Phospho 40.3 1.1E+02 0.0023 35.2 8.2 47 146-193 477-523 (762)
119 PRK06555 pyrophosphate--fructo 39.6 1.1E+02 0.0025 32.2 7.8 46 146-193 111-156 (403)
120 PRK13805 bifunctional acetalde 39.1 1.5E+02 0.0032 34.5 9.4 74 80-167 480-558 (862)
121 PRK14071 6-phosphofructokinase 37.6 1.3E+02 0.0028 31.2 7.9 46 146-198 106-154 (360)
122 cd08196 DHQS-like1 Dehydroquin 37.5 2.2E+02 0.0047 29.3 9.5 91 81-186 20-110 (346)
123 COG0337 AroB 3-dehydroquinate 35.9 2E+02 0.0043 29.9 8.8 96 78-186 31-128 (360)
124 PLN02948 phosphoribosylaminoim 35.7 2.2E+02 0.0048 31.5 9.8 89 80-189 410-499 (577)
125 PRK05948 precorrin-2 methyltra 33.0 3.5E+02 0.0076 26.2 9.7 48 146-198 91-143 (238)
126 cd00127 DSPc Dual specificity 32.8 11 0.00025 32.3 -0.7 32 17-48 74-106 (139)
127 PRK14072 6-phosphofructokinase 32.6 1.7E+02 0.0038 30.9 8.0 46 146-193 102-147 (416)
128 COG0205 PfkA 6-phosphofructoki 32.1 2E+02 0.0043 29.8 8.1 41 146-193 93-133 (347)
129 KOG1719 Dual specificity phosp 28.9 22 0.00048 32.5 0.5 32 17-48 102-134 (183)
130 TIGR02478 6PF1K_euk 6-phosphof 28.2 1.6E+02 0.0034 33.7 7.2 48 146-193 93-155 (745)
131 PF07015 VirC1: VirC1 protein; 27.6 5.2E+02 0.011 25.2 9.6 27 81-108 1-27 (231)
132 cd00764 Eukaryotic_PFK Phospho 27.4 1.7E+02 0.0037 33.6 7.2 48 146-193 96-158 (762)
133 PRK07085 diphosphate--fructose 27.3 1.3E+02 0.0027 33.3 6.0 50 146-198 163-218 (555)
134 PRK06756 flavodoxin; Provision 25.5 4.5E+02 0.0097 22.8 8.4 28 81-110 2-29 (148)
135 TIGR02477 PFKA_PPi diphosphate 25.1 1.3E+02 0.0029 33.0 5.6 46 146-194 160-206 (539)
136 TIGR02478 6PF1K_euk 6-phosphof 25.1 2.8E+02 0.006 31.8 8.4 47 146-193 477-523 (745)
137 PLN02884 6-phosphofructokinase 25.0 2.8E+02 0.0062 29.3 7.9 51 146-198 142-195 (411)
138 COG1979 Uncharacterized oxidor 25.0 2.3E+02 0.0049 29.3 6.8 68 78-156 27-94 (384)
139 PLN03028 pyrophosphate--fructo 24.8 1.5E+02 0.0032 33.1 6.0 48 146-198 172-227 (610)
140 COG0371 GldA Glycerol dehydrog 24.6 3.5E+02 0.0075 28.2 8.3 94 81-195 31-125 (360)
141 PF00365 PFK: Phosphofructokin 21.9 1.2E+02 0.0025 30.4 4.2 42 146-194 91-132 (282)
142 PTZ00393 protein tyrosine phos 21.9 23 0.0005 34.7 -0.8 30 18-47 164-194 (241)
143 PLN02499 glycerol-3-phosphate 21.6 30 0.00064 37.4 -0.1 13 149-161 466-478 (498)
144 PTZ00287 6-phosphofructokinase 20.8 1.4E+02 0.003 36.5 5.0 49 146-198 927-982 (1419)
145 PF13528 Glyco_trans_1_3: Glyc 20.7 4.1E+02 0.0088 25.9 7.9 31 146-187 249-279 (318)
146 PRK11866 2-oxoacid ferredoxin 20.3 81 0.0018 31.5 2.7 24 146-169 75-99 (279)
147 PRK12613 galactose-6-phosphate 20.3 2.1E+02 0.0045 25.7 5.0 40 96-138 11-50 (141)
No 1
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-69 Score=563.81 Aligned_cols=388 Identities=35% Similarity=0.569 Sum_probs=312.6
Q ss_pred cccccceee---ehhccCcce-eEecccccccccccccchhhhhhhhhhhcCCCCCCCCCCC---Ccc---ccCCCCCCC
Q 013013 10 IAARSSMID---SIRGCGLSG-MRIDKEDLRRKLSIPEYLRVAMSNAIRRKEGEPPADTCQS---DVI---VDGNGVQPP 79 (451)
Q Consensus 10 ~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~ 79 (451)
.+.++|+|+ -|.+|-.-. -+|+++.+++++..|.++.++.+..+ ..+.........+ .+. .......++
T Consensus 192 ~~~~~c~~~~~~~h~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (634)
T KOG1169|consen 192 LTGPRCGWCQIRVHDKCKSELSQECDLGELKDHILPPSTLRPARTARV-ASDHSGLPGEKSEEVTDAKKMQQLLVTDPPD 270 (634)
T ss_pred ccccccceeeeeeecchHHHHhhhccChhhhhccCCceeeeccccccc-ccccccccccccccccccccccccccCCCCC
Confidence 567888886 455665544 69999999999999999999876631 0000000000000 000 011455678
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeec-ccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVK-PHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~-p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
..|++||+||+||+++|++++++|+.+|++.|+||+...+ |.. ...+.++ .+..+|+||||||
T Consensus 271 ~~PLlVfvNpKSGg~~G~~ll~~f~~lLnp~QVfdl~~~~~p~~--------gL~l~~~--------~~~~riLVcGGDG 334 (634)
T KOG1169|consen 271 WRPLLVFVNPKSGGQQGERLLRRFRYLLNPVQVFDLLKRGGPRP--------GLTLFRD--------VPDFRILVCGGDG 334 (634)
T ss_pred CcceEEEEecCCcccccHHHHHHHHHhcChhhEEecccCCCCch--------hHHHHHh--------CCcceEEEecCCC
Confidence 8999999999999999999999999999999999998764 543 2334432 2445999999999
Q ss_pred hHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEEecCCCC
Q 013013 159 TVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGE 238 (451)
Q Consensus 159 Tv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~ 238 (451)
||+|||+++.+.+..+....|||||+|+||||||||+|+||++||++++. +.++|+++..+.++++|+|+|.+.++++.
T Consensus 335 TvGWVL~~i~~~n~~~~~~~PpVAilPLGTGNDLsR~l~WGgg~~g~~~~-~~~iL~~i~~a~v~~lDrW~v~v~~~~~~ 413 (634)
T KOG1169|consen 335 TVGWVLGCIDKLNKQNAIPPPPVAILPLGTGNDLSRVLRWGGGYPGEDRN-LIKILKDIEEAPVTKLDRWKVLVEPQSGE 413 (634)
T ss_pred cchhhhhhHHHhhccccCCCCCeEEEecCCCCchHhhcCCCCCCCcchhh-HHHHHHhhhhccceecceeeEEeeccccc
Confidence 99999999999866555679999999999999999999999999999887 89999999999999999999999887764
Q ss_pred ccCCCCCCCCCccccccccccccCCCCcccccccceeEeEeecchhHHHhhhhhhccccCCCccccCCCcceeecccccc
Q 013013 239 VVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCT 318 (451)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~r~~nkl~Y~~~g~~ 318 (451)
.. +++.++.+. ..+....+|+||||||+||+|+++||.+|+++|++|+||+.||++|+.+|+.
T Consensus 414 ~~--~~~~~~~~~---------------~~~~~~~imnNYFSIGvDA~Ia~~FH~~Re~~PekF~Sr~~NKl~Yf~~G~q 476 (634)
T KOG1169|consen 414 LV--QYSLKPPEK---------------GDPVPYGIMNNYFSIGVDAQIAYGFHNMREKNPEKFNSRMKNKLWYFEFGTQ 476 (634)
T ss_pred cc--cccccCCCc---------------CCCCCeeeEeeeeeecccHHHHHHHHHHhhhChHhhcchhhceeeeeeecch
Confidence 33 444443210 1122468999999999999999999999999999999999999999999984
Q ss_pred cccccccccCCCcccccccceeEEEeeeccCCceEEeecCcceeEEEEcccCCCCCCCCCCCCChhhhhhcCCCCCcCCC
Q 013013 319 QGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADD 398 (451)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~i~~v~~~~~~~~~i~~~~~~ivv~N~~~~ggG~~~wg~~~~~~~~~~~~~~a~~dD 398 (451)
-||++.|++ + +++++...+.+|+.++++.++++|+++|+||||||.+|||+.++++.+.+++.+++.||
T Consensus 477 -~~f~~~ck~------~----~~~i~i~~~~d~~dl~~p~sleGIv~LNIpS~ggG~nlWg~~~~~~~~~~~~~~~d~~d 545 (634)
T KOG1169|consen 477 -ETFAARCKN------L----HLHIKIELDGDGEDLELPKSLEGIVVLNIPSWGGGSNLWGNSNKSKGNFRGFSEADDDD 545 (634)
T ss_pred -hhHHHhhcC------C----ccceEEEEcccceEccCCCCceeEEEEcccccccCcccccccCccccccccccccCCCc
Confidence 468888863 2 23333223456888888889999999999999999999999999999999999999999
Q ss_pred CeEEEEEEcchhhHHHHHhhccCceEEee----eceEEEEEeCCcchhh
Q 013013 399 GLLEIFGLKQGWHASFVMVELISAKHIAQ----VLQSLQSFVCSLSKQK 443 (451)
Q Consensus 399 GlLeVv~l~~~~~~~~~~~~l~~g~~l~Q----~~~i~i~~~~~~~~~~ 443 (451)
|++|||++++.||.++++++|.+++|++| +.+++|...+..|+|+
T Consensus 546 gliEvvgv~~~~h~~~~qvgL~~a~rigQ~~a~~~~~~i~~~k~~PMQi 594 (634)
T KOG1169|consen 546 GLIEVVGVQDSWHLLQEQVGLESALRIGQRLAQCSERVIGTKKTFPMQI 594 (634)
T ss_pred CeEEEEEeccchhhhhhhhccchhhHHHHHhhccEEEEeccccCcceec
Confidence 99999999999999999999999999996 3455589999999996
No 2
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=100.00 E-value=6e-61 Score=487.48 Aligned_cols=358 Identities=30% Similarity=0.510 Sum_probs=276.3
Q ss_pred Eecccccccccccccchhhhhhhhh-------------hhcCCCCCCCCCCCCccccCCCCCCCCCeEEEEEcCCCCCCC
Q 013013 29 RIDKEDLRRKLSIPEYLRVAMSNAI-------------RRKEGEPPADTCQSDVIVDGNGVQPPEAPMVVFINSRSGGRH 95 (451)
Q Consensus 29 ~~~~~~~~~~~~~~~yl~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVivNP~SG~~~ 95 (451)
.|.+|.+..+|++|+||+...+-.. ++|.++.+......+++.++..+.++++|++|||||+|||++
T Consensus 301 pCslGahaavivPPTWIlr~~~pqnslkaskkkkRtsfkRKasKkg~ee~k~rpFvikPtsSplmkPLLVFVNPKSGGNq 380 (1004)
T KOG0782|consen 301 PCSLGAHAAVIVPPTWILRLANPQNSLKASKKKKRTSFKRKASKKGHEENKGRPFVIKPTSSPLMKPLLVFVNPKSGGNQ 380 (1004)
T ss_pred cccccccceeecCchHheeecCccchhhhhhhcccCchhhhhhhccchhccCCceEEccCCCCCCCceEEEecCCCCCcc
Confidence 7999999999999999987654321 111111111122234566678888999999999999999999
Q ss_pred hhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhHHHHHHHhhhcccCCC
Q 013013 96 GPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGELNKQGR 175 (451)
Q Consensus 96 g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~ 175 (451)
|.++++.|.++|+++|+||++...|.. +-++-++ ....||++|||||||+|+|+.|+.++.
T Consensus 381 GsK~lq~f~WyLNPRQVFDlsq~GPK~--------aLEmyRK--------V~nLRILaCGGDGTVGWiLStLD~L~l--- 441 (1004)
T KOG0782|consen 381 GSKALQTFCWYLNPRQVFDLSQLGPKF--------ALEMYRK--------VVNLRILACGGDGTVGWILSTLDNLNL--- 441 (1004)
T ss_pred hHHHHHHHHHhcChhhheehhccCcHH--------HHHHHHh--------ccceEEEEecCCCceeehhhhhhhcCC---
Confidence 999999999999999999999876653 3333332 345899999999999999999998753
Q ss_pred CCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEEecCCCCccCCCCCCCCCcccccc
Q 013013 176 EPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPPHSLKPTEDCALD 255 (451)
Q Consensus 176 ~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~~~~~~~~~~~~~~~~~ 255 (451)
.+.||+||+|+||||||||+|+||++|.++ ++.++|.++++|.++.+|+|++.+ +|+.+. .+ + ..|
T Consensus 442 ~p~PPvailPLGTGNDLARtlnWGGgytDE---PvSkil~~ve~gtvVqLDRW~lhv-EpNp~~-------~p-E--e~d 507 (1004)
T KOG0782|consen 442 PPYPPVAILPLGTGNDLARTLNWGGGYTDE---PVSKILQAVEHGTVVQLDRWRLHV-EPNPSC-------NP-E--EED 507 (1004)
T ss_pred CCCCCeeEeecCCcchHHHhcccCCCcCcc---hHHHHHHHHhcCcEEeeeeeeecc-cCCCCC-------Ch-h--hhc
Confidence 688999999999999999999999999986 578899999999999999999998 454421 00 0 012
Q ss_pred ccccccCCCCcccccccceeEeEeecchhHHHhhhhhhccccCCCccccCCCcceeecccccccccccccccCCCccccc
Q 013013 256 QGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFLTPCISDPNLRGL 335 (451)
Q Consensus 256 ~g~~~~~~~~~~~~~~~~~f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~r~~nkl~Y~~~g~~~~~~~~~~~~~~~l~~~ 335 (451)
+|.. +.+| -.+|.||||+||||+|..+||+.|+..|++|++|++||++|+..++..++ .. +++.+
T Consensus 508 dG~~--~~LP------L~VfnNYFSlGfDAHVtLeFHeSReANPekfNSRfrNkmfYaG~afsDfl-~r------SskDL 572 (1004)
T KOG0782|consen 508 DGMQ--SALP------LTVFNNYFSLGFDAHVTLEFHESREANPEKFNSRFRNKMFYAGLAFSDFL-KR------SSKDL 572 (1004)
T ss_pred ccch--hccc------hhHhhccccccccceEEEEeccccccCHHHHHHHHhhhhhhcchhHHHHH-hh------hhHHh
Confidence 2321 1233 25899999999999999999999999999999999999999999988753 22 12334
Q ss_pred ccceeEEEeeeccCCceEEeecCcceeEEEEcccCCCCCCCCCCCCChhhhhhcCCCCCcCCCCeEEEEEEcchhhHHHH
Q 013013 336 KNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGLLEIFGLKQGWHASFV 415 (451)
Q Consensus 336 ~~~~~~~i~~v~~~~~~~~~i~~~~~~ivv~N~~~~ggG~~~wg~~~~~~~~~~~~~~a~~dDGlLeVv~l~~~~~~~~~ 415 (451)
.+.+++.+..+|.. .... +-+..+|+++|+|+|.+|..|||++.+. ..|..++.|||++||++|+-..-.+..
T Consensus 573 ~khi~vvCDG~DlT-PkIq--eLK~qCivFlNIprYcaGTmPWG~pgdh----hDfePqrhdDGyvEViGFTmasLAALQ 645 (1004)
T KOG0782|consen 573 CKHITVVCDGVDLT-PKIQ--ELKLQCIVFLNIPRYCAGTMPWGEPGDH----HDFEPQRHDDGYVEVIGFTMASLAALQ 645 (1004)
T ss_pred hhheEEEecCccCC-hhhh--hcccceEEEecchhhhcCccCCCCCCcc----ccCCccccCCceEEEEeeeHHHHHHHh
Confidence 44444433322210 0111 2358999999999999999999988643 346788899999999999876554433
Q ss_pred HhhccCceEEeeeceEEEEEeCCcchhh
Q 013013 416 MVELISAKHIAQVLQSLQSFVCSLSKQK 443 (451)
Q Consensus 416 ~~~l~~g~~l~Q~~~i~i~~~~~~~~~~ 443 (451)
+- .+|.|++||.++++.+.+..|+|.
T Consensus 646 vG--GhGERl~QCreV~l~T~KaIPmQV 671 (1004)
T KOG0782|consen 646 VG--GHGERLAQCREVRLITNKAIPMQV 671 (1004)
T ss_pred hc--CcchhhhhceeEEEEeccccceee
Confidence 33 389999999999999999999996
No 3
>PRK12361 hypothetical protein; Provisional
Probab=100.00 E-value=1e-39 Score=351.22 Aligned_cols=326 Identities=21% Similarity=0.194 Sum_probs=231.7
Q ss_pred eeeehhccCcce-eEecccccccccccccchhhhhh----hhhhhcCCCCCCCCCCCCc----cc--cCCCCCCCCCeEE
Q 013013 16 MIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVAMS----NAIRRKEGEPPADTCQSDV----IV--DGNGVQPPEAPMV 84 (451)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~~~----~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~l 84 (451)
.++..++.|.+| |||..|..||..++.+||....+ +.-.+..+++|+...+|.. ++ .+.......++++
T Consensus 167 ~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~~~~~~~~~~ 246 (547)
T PRK12361 167 WIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQGKLNIHKRAW 246 (547)
T ss_pred HHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcccCCceE
Confidence 345777888899 99999999999999999985421 2223445556665555532 11 2456667788999
Q ss_pred EEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhHHHHH
Q 013013 85 VFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVL 164 (451)
Q Consensus 85 VivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv~~Vl 164 (451)
||+||+||++++.+.++++++.|.+. +++.+. .|+..+|++++++++. ..+.+.||++||||||++|+
T Consensus 247 iI~NP~SG~g~~~~~~~~i~~~L~~~--~~~~v~-----~t~~~~~a~~la~~~~-----~~~~d~Viv~GGDGTl~ev~ 314 (547)
T PRK12361 247 LIANPVSGGGKWQEYGEQIQRELKAY--FDLTVK-----LTTPEISAEALAKQAR-----KAGADIVIACGGDGTVTEVA 314 (547)
T ss_pred EEECCCCCCCcHHHHHHHHHHHHhcC--CceEEE-----ECCCCccHHHHHHHHH-----hcCCCEEEEECCCcHHHHHH
Confidence 99999999999999999999999864 455443 3445688999988753 24568999999999999999
Q ss_pred HHhhhcccCCCCCCCcEEEecCCCCcchhhhc-CCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEEecCCCCccCCC
Q 013013 165 GSVGELNKQGREPVPPVAIIPLGTGNDLSRSF-GWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPP 243 (451)
Q Consensus 165 n~L~~~~~~~~~~~~plgiIPlGTgNDfArsL-g~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~~~~~ 243 (451)
|++.+ .++|||+||+||||||||+| |++..+ .++.+++ +.+.+|+++++|++.+
T Consensus 315 ~~l~~-------~~~~lgiiP~GTgNdfAr~L~gi~~~~-~~~~~a~----~~i~~g~~~~iD~g~v------------- 369 (547)
T PRK12361 315 SELVN-------TDITLGIIPLGTANALSHALFGLGSKL-IPVEQAC----DNIIQGHTQRIDTARC------------- 369 (547)
T ss_pred HHHhc-------CCCCEEEecCCchhHHHHHhcCCCCCC-ccHHHHH----HHHHhCCCeEEEEEEE-------------
Confidence 99975 56899999999999999999 895321 2444444 4567899999999754
Q ss_pred CCCCCCccccccccccccCCCCcccccccceeEeEeecchhHHHhhhhhhccccCCCccccCCCcceeeccccccccccc
Q 013013 244 HSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFL 323 (451)
Q Consensus 244 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~r~~nkl~Y~~~g~~~~~~~ 323 (451)
++++|+|++|+|+||+|++..++.+ |. ++ |+++|+..+++.++..
T Consensus 370 ---------------------------n~~~fln~agiG~da~v~~~~~~~~--k~-----~~-G~laY~~~~~~~l~~~ 414 (547)
T PRK12361 370 ---------------------------NDRLMLLLVGIGFEQKMIESADRER--KN-----AL-GQLAYLDGLWRAVNEN 414 (547)
T ss_pred ---------------------------cCeEEEEEEeechhHHHHHhccHHH--Hh-----cc-CHHHHHHHHHHHhhcC
Confidence 2479999999999999999888543 21 23 8899998766554211
Q ss_pred ccccCCCcccccccceeEEEeeeccCCceEEeecCcceeEEEEcccCCCCCCCCCCCCChhhhhhcCCCCCcCCCCeEEE
Q 013013 324 TPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGLLEI 403 (451)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~i~~v~~~~~~~~~i~~~~~~ivv~N~~~~ggG~~~wg~~~~~~~~~~~~~~a~~dDGlLeV 403 (451)
...++++. +++. +... .++.+++++|+++|++.... | .+.+++|||+|||
T Consensus 415 -------------~~~~l~i~-~dg~--~~~~--~~~~~l~v~N~~~~~~~~~~-G-----------gg~~~~~DG~Ldv 464 (547)
T PRK12361 415 -------------ETLTLTVT-LDDA--EPQT--ISTHSLVVANAAPFTSLLAQ-G-----------GGEPNMTDGLLDI 464 (547)
T ss_pred -------------CCeeEEEE-ECCC--CceE--EEEEEEEEEcCCCccccccc-C-----------CCCCCCCCceeEE
Confidence 12344444 4432 2221 25788999999776542211 1 1245799999999
Q ss_pred EEEcch----hhHHHH----Hhhc-----cCceEEeeeceEEEEEeCCcchhh
Q 013013 404 FGLKQG----WHASFV----MVEL-----ISAKHIAQVLQSLQSFVCSLSKQK 443 (451)
Q Consensus 404 v~l~~~----~~~~~~----~~~l-----~~g~~l~Q~~~i~i~~~~~~~~~~ 443 (451)
+++++. +++..+ +.+. ....+..++++++|+..++.++|.
T Consensus 465 ~~v~~~~~~~~~l~~l~~~~~~g~~~~~~~~~v~~~~~k~v~I~~~~~~~~~i 517 (547)
T PRK12361 465 TWLDSGGEPGEQLLSLAELALSGLGKEPEANKVHHAHAKKVTISSQKPIKYVI 517 (547)
T ss_pred EEEcCCCcchHHHHHHHHHHHHHhcccCCCCceEEEEeeEEEEEeCCceEEEE
Confidence 999873 243322 2221 134578899999999988777663
No 4
>PRK11914 diacylglycerol kinase; Reviewed
Probab=100.00 E-value=1.2e-37 Score=312.26 Aligned_cols=261 Identities=21% Similarity=0.215 Sum_probs=194.3
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
++++++|+||.||++++.+.++++.+.|... .+++.+. .|+..+|++++++++. ..+.|.||++|||||
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~-g~~~~~~-----~t~~~~~~~~~a~~~~-----~~~~d~vvv~GGDGT 76 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHHR-GVDVVEI-----VGTDAHDARHLVAAAL-----AKGTDALVVVGGDGV 76 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHHc-CCeEEEE-----EeCCHHHHHHHHHHHH-----hcCCCEEEEECCchH
Confidence 5789999999999999888888888888754 4555543 3446789999998753 245689999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCC-cHHHHHHHHHHHHhcCCeeeeeeeEEEEecCCCC
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPF-AWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGE 238 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~-~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~ 238 (451)
||+|++++.. .++|||+||+||||||||+||+ |. ++.+++ +.+..|+++++|++++.-. +
T Consensus 77 i~evv~~l~~-------~~~~lgiiP~GT~NdfAr~lg~----~~~~~~~a~----~~i~~g~~~~iDlg~v~~~--~-- 137 (306)
T PRK11914 77 ISNALQVLAG-------TDIPLGIIPAGTGNDHAREFGI----PTGDPEAAA----DVIVDGWTETVDLGRIQDD--D-- 137 (306)
T ss_pred HHHHhHHhcc-------CCCcEEEEeCCCcchhHHHcCC----CCCCHHHHH----HHHHcCCceEEEEEEEecC--C--
Confidence 9999999974 5689999999999999999998 53 454444 4467899999999977420 0
Q ss_pred ccCCCCCCCCCccccccccccccCCCCcccccccceeEeEeecchhHHHhhhhhhccccCCCccccCCCcceeecccccc
Q 013013 239 VVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCT 318 (451)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~r~~nkl~Y~~~g~~ 318 (451)
+ ..++|+|++|+||||.|++..++.|. ++ ++++|...+++
T Consensus 138 -----------------------~--------~~~~f~n~~~~G~~a~v~~~~~~~k~--------~~-G~~aY~~~~l~ 177 (306)
T PRK11914 138 -----------------------G--------IVKWFGTVAATGFDSLVTDRANRMRW--------PH-GRMRYNLAMLA 177 (306)
T ss_pred -----------------------C--------CcEEEEEEEeeehHHHHHHHHHhccc--------cC-CchhhHHHHHH
Confidence 0 13799999999999999988875431 22 78899988776
Q ss_pred cccccccccCCCcccccccceeEEEeeeccCCceEEeecCcceeEEEEcccCCCCCCCCCCCCChhhhhhcCCCCCcCCC
Q 013013 319 QGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADD 398 (451)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~i~~v~~~~~~~~~i~~~~~~ivv~N~~~~ggG~~~wg~~~~~~~~~~~~~~a~~dD 398 (451)
.++.. ..+++++. ++. ++.. ..++..+.|+|.++||||+.+ . |+++++|
T Consensus 178 ~l~~~-------------~~~~~~i~-~dg--~~~~--~~~~~~~~v~N~~~~GG~~~~----~---------p~a~~~D 226 (306)
T PRK11914 178 ELSKL-------------RPLPFRLV-LDG--TEEI--VTDLTLAAFGNTRSYGGGMLI----C---------PNADHTD 226 (306)
T ss_pred HHHhc-------------CCCcEEEE-EeC--CeEE--EeeEEEEEEeCcccccCCcee----C---------CCCcCCC
Confidence 64321 12334443 332 2333 236888999999999999875 2 7899999
Q ss_pred CeEEEEEEcc--hhhHHHHHhhccCc-------eEEeeeceEEEEEeCCcchh
Q 013013 399 GLLEIFGLKQ--GWHASFVMVELISA-------KHIAQVLQSLQSFVCSLSKQ 442 (451)
Q Consensus 399 GlLeVv~l~~--~~~~~~~~~~l~~g-------~~l~Q~~~i~i~~~~~~~~~ 442 (451)
|+|||++++. .+.+..++..+..| .+..++++++|++. +.+.|
T Consensus 227 G~ldv~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~i~i~~~-~~~~~ 278 (306)
T PRK11914 227 GLLDITMVQSASRTRLLRLFPTVFKGTHVELDEVSTARAKTVHVECP-GINAY 278 (306)
T ss_pred CcEEEEEEecCCHHHHHHHHHHhcCCcccCCCcEEEEEeEEEEEEcC-Cccee
Confidence 9999999987 34555555555444 45778999999875 34444
No 5
>PRK13057 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.2e-37 Score=309.52 Aligned_cols=251 Identities=19% Similarity=0.220 Sum_probs=190.3
Q ss_pred EEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhHHHH
Q 013013 84 VVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWV 163 (451)
Q Consensus 84 lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv~~V 163 (451)
++|+||.||+++ +.++++++.|... .+++... .|+..+++++++++. ..+.+.||++||||||++|
T Consensus 1 ~~I~Np~sg~~~--~~~~~i~~~l~~~-g~~~~~~-----~t~~~~~a~~~~~~~------~~~~d~iiv~GGDGTv~~v 66 (287)
T PRK13057 1 LLLVNRHARSGR--AALAAARAALEAA-GLELVEP-----PAEDPDDLSEVIEAY------ADGVDLVIVGGGDGTLNAA 66 (287)
T ss_pred CEEECCCCCCcc--hhHHHHHHHHHHc-CCeEEEE-----ecCCHHHHHHHHHHH------HcCCCEEEEECchHHHHHH
Confidence 489999999876 4678888888764 3555443 345678899988763 2456899999999999999
Q ss_pred HHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEEecCCCCccCCC
Q 013013 164 LGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPP 243 (451)
Q Consensus 164 ln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~~~~~ 243 (451)
+|++.. .++|||+||+||||||||+||+ |.++.++++ .+..++++++|++++
T Consensus 67 ~~~l~~-------~~~~lgiiP~GT~Ndfar~Lg~----~~~~~~a~~----~i~~~~~~~vD~g~~------------- 118 (287)
T PRK13057 67 APALVE-------TGLPLGILPLGTANDLARTLGI----PLDLEAAAR----VIATGQVRRIDLGWV------------- 118 (287)
T ss_pred HHHHhc-------CCCcEEEECCCCccHHHHHcCC----CCCHHHHHH----HHHcCCeEEeeEEEE-------------
Confidence 999975 4689999999999999999999 656655554 466899999999864
Q ss_pred CCCCCCccccccccccccCCCCcccccccceeEeEeecchhHHHhhhhhhccccCCCccccCCCcceeeccccccccccc
Q 013013 244 HSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFL 323 (451)
Q Consensus 244 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~r~~nkl~Y~~~g~~~~~~~ 323 (451)
+++||+|++|+||||+|++.++..+ | .++ |+++|+..+++.++..
T Consensus 119 ---------------------------~~~~f~n~~g~G~da~v~~~~~~~~--k-----~~~-G~~aY~~~~~~~l~~~ 163 (287)
T PRK13057 119 ---------------------------NGHYFFNVASLGLSAELARRLTKEL--K-----RRW-GTLGYAIAALRVLRRS 163 (287)
T ss_pred ---------------------------CCEEEEEEEecCccHHHHHHhhHHh--h-----ccC-ChhHHHHHHHHHHhhC
Confidence 1379999999999999999887533 1 133 8899998877654321
Q ss_pred ccccCCCcccccccceeEEEeeeccCCceEEeecCcceeEEEEcccCCCCCCCCCCCCChhhhhhcCCCCCcCCCCeEEE
Q 013013 324 TPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGLLEI 403 (451)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~i~~v~~~~~~~~~i~~~~~~ivv~N~~~~ggG~~~wg~~~~~~~~~~~~~~a~~dDGlLeV 403 (451)
..+++++. ++ ++... .+...++++|.++||||+.++ |.++++||+|||
T Consensus 164 -------------~~~~~~l~-~d---~~~~~--~~~~~~~v~N~~~~gg~~~~~-------------p~a~~~DG~ldv 211 (287)
T PRK13057 164 -------------RPFTAEIE-HD---GRTER--VKTLQVAVGNGRYYGGGMTVA-------------HDATIDDGRLDL 211 (287)
T ss_pred -------------CCeEEEEE-EC---CEEEE--EEEEEEEEecCcccCCCcccC-------------CCCCCCCceEEE
Confidence 12344443 32 24333 257788999999999998762 789999999999
Q ss_pred EEEcc--hhhHHHHHhhccC-------ceEEeeeceEEEEEeCCcchhh
Q 013013 404 FGLKQ--GWHASFVMVELIS-------AKHIAQVLQSLQSFVCSLSKQK 443 (451)
Q Consensus 404 v~l~~--~~~~~~~~~~l~~-------g~~l~Q~~~i~i~~~~~~~~~~ 443 (451)
++++. .+.+..++..+.. ..+..|+++++|++.++.++|.
T Consensus 212 ~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~~~~~~~~~~ 260 (287)
T PRK13057 212 YSLEVAHWWRLLALLPALRRGRHGEWPDVRAFRTTELELRTRKPRPINT 260 (287)
T ss_pred EEecCCCHHHHHHHHHHHhcCCccCCCcEEEEEeeEEEEEeCCCcEEee
Confidence 99987 4555555555443 3578899999999998888764
No 6
>PRK13059 putative lipid kinase; Reviewed
Probab=100.00 E-value=5.3e-37 Score=306.30 Aligned_cols=257 Identities=18% Similarity=0.147 Sum_probs=187.0
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhH
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv 160 (451)
+++++|+||.||++++.+.++++++.|... .+++....++. ..+. ++++++. ....+.||++||||||
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~-g~~~~~~~~~~-----~~~~-~~~~~~~-----~~~~d~vi~~GGDGTv 69 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQEK-GYLVVPYRISL-----EYDL-KNAFKDI-----DESYKYILIAGGDGTV 69 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHHC-CcEEEEEEccC-----cchH-HHHHHHh-----hcCCCEEEEECCccHH
Confidence 578999999999998878888888888764 45655433321 1222 3333321 2456899999999999
Q ss_pred HHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEEecCCCCcc
Q 013013 161 GWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVV 240 (451)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~~ 240 (451)
|+|+|+|.+. ..++|||+||+||||||||+||+ |.++.++++. +..|+++++|++++
T Consensus 70 ~evv~gl~~~-----~~~~~lgviP~GTgNdfAr~lgi----~~~~~~a~~~----i~~g~~~~vDlg~v---------- 126 (295)
T PRK13059 70 DNVVNAMKKL-----NIDLPIGILPVGTANDFAKFLGM----PTDIGEACEQ----ILKSKPKKVDLGKI---------- 126 (295)
T ss_pred HHHHHHHHhc-----CCCCcEEEECCCCHhHHHHHhCC----CCCHHHHHHH----HHhCCcEEeeEEEE----------
Confidence 9999999863 25689999999999999999998 6676666554 56799999999864
Q ss_pred CCCCCCCCCccccccccccccCCCCcccccccceeEeEeecchhHHHhhhhhhccccCCCccccCCCcceeecccccccc
Q 013013 241 DPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQG 320 (451)
Q Consensus 241 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~r~~nkl~Y~~~g~~~~ 320 (451)
+++||+|++|+||||+|++.++... | +..|+++|+..+++.+
T Consensus 127 ------------------------------~~~~f~n~~~~G~~a~v~~~~~~~~--k------~~~G~~aY~~~~~~~l 168 (295)
T PRK13059 127 ------------------------------NDKYFINVASTGLFTDVSQKTDVNL--K------NTIGKLAYYLKGLEEL 168 (295)
T ss_pred ------------------------------CCEEEEEEEeeeechhhhhhccHHH--h------hCcchHHHHHHHHHHH
Confidence 2479999999999999999887422 1 2238899998887765
Q ss_pred cccccccCCCcccccccceeEEEeeeccCCceEEeecCcceeEEEEcccCCCCCCCCCCCCChhhhhhcCCCCCcCCCCe
Q 013013 321 WFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGL 400 (451)
Q Consensus 321 ~~~~~~~~~~~l~~~~~~~~~~i~~v~~~~~~~~~i~~~~~~ivv~N~~~~ggG~~~wg~~~~~~~~~~~~~~a~~dDGl 400 (451)
+... ..++++. ++ ++.. ..+...++|+|.++||| +.+ . |+|+++||+
T Consensus 169 ~~~~-------------~~~~~i~-~d---~~~~--~~~~~~~~v~N~~~~Gg-~~~----~---------p~a~~~DG~ 215 (295)
T PRK13059 169 PNFR-------------KLKVKVT-SE---EVNF--DGDMYLMLVFNGQTAGN-FNL----A---------YKAEVDDGL 215 (295)
T ss_pred hcCC-------------CeeEEEE-EC---CEEE--EeeEEEEEEEcCccccC-ccc----C---------CcccCCCCe
Confidence 3221 2334443 32 3433 23578889999998865 554 3 789999999
Q ss_pred EEEEEEcch--hhHHHHHhhccCc--------eEEeeeceEEEEEeCCcchhh
Q 013013 401 LEIFGLKQG--WHASFVMVELISA--------KHIAQVLQSLQSFVCSLSKQK 443 (451)
Q Consensus 401 LeVv~l~~~--~~~~~~~~~l~~g--------~~l~Q~~~i~i~~~~~~~~~~ 443 (451)
|||+++++. |.+..++..+..| .+..++++++|+..++.++|.
T Consensus 216 Ldv~i~~~~~~~~~l~~~~~~~~G~~~~~~~~v~~~~~~~i~i~~~~~~~~~~ 268 (295)
T PRK13059 216 LDVIIIKACPIIDLIPLFIKVLKGEHLEDVNGLIYFKTDKLEIESNEEIVTDI 268 (295)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHcCCccCCCccEEEEEeeEEEEEeCCCceEEe
Confidence 999999883 5555555444322 567789999999988777663
No 7
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=100.00 E-value=3.6e-39 Score=338.99 Aligned_cols=384 Identities=27% Similarity=0.416 Sum_probs=273.7
Q ss_pred cccccccccceee---ehhccCcce-eEecccccccccccccchhhhhhhhhhhcCCCCCCCCCCCCccccCCCCCCCCC
Q 013013 6 STTRIAARSSMID---SIRGCGLSG-MRIDKEDLRRKLSIPEYLRVAMSNAIRRKEGEPPADTCQSDVIVDGNGVQPPEA 81 (451)
Q Consensus 6 ~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (451)
|.-+..---|+|+ .|..|-.+. -+|.+|.-+.-...|..|-....|... -... ...+.+-..
T Consensus 130 s~~rlqd~rclwc~~~vh~~c~~~~~~~cs~~~~~~svi~ptal~~~~~dg~~----------v~~~----~a~~~~~~s 195 (1099)
T KOG1170|consen 130 SVLRLQDYRCLWCGCCVHDTCIGNLARACSLGHSALSVIPPTALKEVTPDGTA----------VFWE----EAYGGPCGS 195 (1099)
T ss_pred cccccCCcceEeeccEeehhhhhhHHhhcccccccccccChhhhcccCCCcce----------eehh----hhcCCCCCC
Confidence 3333444457775 677777777 689988888888888777665444321 0000 122336678
Q ss_pred eEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhHH
Q 013013 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVG 161 (451)
Q Consensus 82 ~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv~ 161 (451)
|++||+|.+||..+|.+..+++..+|++.|+||+....|+-.++ +-. .-+..+|+||||||+|+
T Consensus 196 pllv~insksgd~qg~~~lrkfkq~lnp~qVfdll~~gp~~gL~--------~f~--------~~d~friLvcggdGsv~ 259 (1099)
T KOG1170|consen 196 PLLVFINSKSGDSQGQRFLRKFKQILNPIQVFDLIAGGPDFGLT--------FFS--------HFESFRILVCGGDGSVG 259 (1099)
T ss_pred ceeEeecccCCCchhHHHHHhhhhhcCHHHHHHHHccCcchhhh--------hhh--------cccceEEEEecCCCCCc
Confidence 99999999999999999999999999999999998777754221 111 12456999999999999
Q ss_pred HHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEEec---CC--
Q 013013 162 WVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQM---PS-- 236 (451)
Q Consensus 162 ~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~---~~-- 236 (451)
||+..++.+.. ..++.++++|+|||||+||.||||..|+.+-. +.++++....+.+..+|.|.+-... ++
T Consensus 260 wvls~~ds~~l---h~kcql~vlplgtgndlarvlgwg~a~~ddt~--~p~il~~~eRastkmldrwsvm~~e~~~~~~~ 334 (1099)
T KOG1170|consen 260 WVLSAIDRLNL---HSKCQLAVLPLGTGNDLARVLGWGHAFYDDTL--LPQILRTMERASTKMLDRWSVMAIEGPQADAV 334 (1099)
T ss_pred chHHHHHhccc---hhhcccccccCCChHHHHHHhcccccCchhhc--cHHHHHHHHhhhhhhhhcchhhhhhccccchH
Confidence 99999988653 57899999999999999999999987776532 3467777888899999999864210 00
Q ss_pred -------------C------------------------------------------------------------------
Q 013013 237 -------------G------------------------------------------------------------------ 237 (451)
Q Consensus 237 -------------~------------------------------------------------------------------ 237 (451)
+
T Consensus 335 ~~~~~~v~~~~~~~e~~~i~~~e~q~~t~l~kiL~s~~~t~~i~~~~~~c~~~~~f~~k~~ka~~s~~~nl~~s~a~~~k 414 (1099)
T KOG1170|consen 335 RRYIEKVETFLEAEETWDIIHAENQLATTLRKILHSVSHTYSILENNTLCTKREDFVKKRSKATPSVLSNLSSSSACSPK 414 (1099)
T ss_pred HHHHHHHHHhcccchhhhhhhhhhhhhhhHHhhhccccchhhhhhhccccchHHHHHHHHhhcccchhccCCchhhcccc
Confidence 0
Q ss_pred -----------------------------------------------C--------------------------------
Q 013013 238 -----------------------------------------------E-------------------------------- 238 (451)
Q Consensus 238 -----------------------------------------------~-------------------------------- 238 (451)
+
T Consensus 415 ~spa~e~~~~~~~~~~~es~assv~~~~t~~~~~~l~~gt~~~~~~g~t~~p~~~~~~~~~~~i~~~r~eL~~kans~kk 494 (1099)
T KOG1170|consen 415 CSPAGEDLPQLFEILHSESSASSVLTALSARTYDELEIGTVHPPTPGATREPSTAYDDDEENEIVENRKELDQKANSLKK 494 (1099)
T ss_pred CCccccchhHHHHHhhhhhhhhhccCCCchhhhhhhhhccccCCCCCccCCCCccccchhhhhhcccHHHHhHHhhhhhc
Confidence 0
Q ss_pred --------cc-CCCC-------------------CCCCCcccccccccc-----------------------ccCC----
Q 013013 239 --------VV-DPPH-------------------SLKPTEDCALDQGLQ-----------------------IEGA---- 263 (451)
Q Consensus 239 --------~~-~~~~-------------------~~~~~~~~~~~~g~~-----------------------~~~~---- 263 (451)
.. -+.+ ++++.... .+.+.. +.+.
T Consensus 495 s~s~~i~~te~a~De~~~~~~~~L~eseekm~~ks~~~~~~s-e~d~~~~~~s~~~~~~spl~rl~s~~~ls~ggs~~s~ 573 (1099)
T KOG1170|consen 495 SVSTIIDITEGAPDEPRIYSDTTLNESEEKMKSKSLHPICSS-EDDMKQHSDSSLYADYSPLERLSSGGGLSAGGSTLSP 573 (1099)
T ss_pred cHHHhHHHhhcCCCcccccchhhhhhhHhhhhhccCCCcccC-ccccccccchhhccccchhhccCCCCCcccCccccCc
Confidence 00 0000 00000000 000000 0000
Q ss_pred -----------------CC-------cc-cc--c-c--cceeEeEeecchhHHHhhhhhhccccCCCccccCCCcceeec
Q 013013 264 -----------------LP-------EK-VN--C-Y--EGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYS 313 (451)
Q Consensus 264 -----------------~~-------~~-~~--~-~--~~~f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~r~~nkl~Y~ 313 (451)
.| +. +. . | .=+|+||||||+||.|...||..|++||++++||.+|.+||+
T Consensus 574 ~~~~d~dtl~al~~~~~~p~~d~g~seS~L~sa~~y~EkCVMNNYFGIGlDAKISLDFhnKReEhPeKcrSR~kn~MWYG 653 (1099)
T KOG1170|consen 574 ARASDSDTLSALKERKRTPGSDLGLSESHLRSAGQYKEKCVMNNYFGIGLDAKISLDFHNKREEHPEKCRSRSKNFMWYG 653 (1099)
T ss_pred ccccccchhhhhhccccCCcccccccccccccccchhhhhhhccccccccceeEeeecccccccChHHHhHHhhhcchhh
Confidence 01 00 00 0 0 126999999999999999999999999999999999999999
Q ss_pred ccccccccccccccCCCcccccccceeEEEeeeccCCceEEeecCcceeEEEEcccCCCCCCCCCCCCChhhhhhcCCCC
Q 013013 314 GYSCTQGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVE 393 (451)
Q Consensus 314 ~~g~~~~~~~~~~~~~~~l~~~~~~~~~~i~~v~~~~~~~~~i~~~~~~ivv~N~~~~ggG~~~wg~~~~~~~~~~~~~~ 393 (451)
..|.+++ ..++|+ ++ +-++. ++|+ |+.+++| ++..|||+|+|+|.||.++||..+.+ -.|..
T Consensus 654 vLGtKeL-LhrTyr------nL----EQRV~-LECD-G~~i~lP-~LQGIviLNIpSyaGGtNFWGsnk~d----d~f~a 715 (1099)
T KOG1170|consen 654 VLGTKEL-LHRTYR------NL----EQRVK-LECD-GVPIDLP-SLQGIVILNIPSYAGGTNFWGSNKDD----DEFTA 715 (1099)
T ss_pred hcchHHH-HHHHHH------hH----HHHee-eecC-CcccCCc-ccceeEEEecccccCcccccCCCCCC----CcccC
Confidence 9999997 445553 23 33444 6775 6888888 79999999999999999999976642 34788
Q ss_pred CcCCCCeEEEEEEcchhhHHHHHhhccCceEEeeeceEEEEEe--CCcchhh
Q 013013 394 AHADDGLLEIFGLKQGWHASFVMVELISAKHIAQVLQSLQSFV--CSLSKQK 443 (451)
Q Consensus 394 a~~dDGlLeVv~l~~~~~~~~~~~~l~~g~~l~Q~~~i~i~~~--~~~~~~~ 443 (451)
++.||+.||||-+=+..+|+...+--..-.||+||.+|+|.+. ++.|+|.
T Consensus 716 pSfDDriLEVVAvFGsvqMA~SRvI~LqhHRIAQCr~V~I~IlGDE~IPVQv 767 (1099)
T KOG1170|consen 716 PSFDDRILEVVAVFGSVQMATSRVIRLQHHRIAQCRHVRIVILGDEGIPVQV 767 (1099)
T ss_pred CCcccceeEEeeeehhHHHHHHHHHHhhhhhhhhceEEEEEEecCCCCceee
Confidence 9999999999999888887754443346789999999998775 5689986
No 8
>PRK13055 putative lipid kinase; Reviewed
Probab=100.00 E-value=5.9e-37 Score=310.98 Aligned_cols=261 Identities=17% Similarity=0.162 Sum_probs=192.6
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
+++++||+||.||++++.+.+.+++++|.... +++.+..++ ...+|++++++++. ..+.+.|||+|||||
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g-~~~~i~~t~----~~~~~a~~~~~~~~-----~~~~d~vvv~GGDGT 71 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAG-YETSAFQTT----PEPNSAKNEAKRAA-----EAGFDLIIAAGGDGT 71 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcC-CeEEEEEee----cCCccHHHHHHHHh-----hcCCCEEEEECCCCH
Confidence 46899999999999988888999999887653 454432221 23468888887653 245689999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCC-cHHHHHHHHHHHHhcCCeeeeeeeEEEEecCCCC
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPF-AWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGE 238 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~-~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~ 238 (451)
||+|+|+|... ...+||||||+||||||||+||+ |. ++.++++. +..|+++++|++.+.
T Consensus 72 l~evvngl~~~-----~~~~~LgiiP~GTgNdfAr~Lgi----~~~~~~~a~~~----l~~g~~~~vD~g~v~------- 131 (334)
T PRK13055 72 INEVVNGIAPL-----EKRPKMAIIPAGTTNDYARALKI----PRDNPVEAAKV----ILKNQTIKMDIGRAN------- 131 (334)
T ss_pred HHHHHHHHhhc-----CCCCcEEEECCCchhHHHHHcCC----CCcCHHHHHHH----HHcCCcEEeeEEEEC-------
Confidence 99999999853 35689999999999999999998 66 56655544 568999999998541
Q ss_pred ccCCCCCCCCCccccccccccccCCCCcccccccceeEeEeecchhHHHhhhhhhccccCCCccccCCCcceeecccccc
Q 013013 239 VVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCT 318 (451)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~r~~nkl~Y~~~g~~ 318 (451)
+++||+|.+|+|+||+|++..+... | .++ |+++|...++.
T Consensus 132 --------------------------------~~~~F~n~ag~G~da~v~~~~~~~~--k-----~~~-G~laY~~~~~~ 171 (334)
T PRK13055 132 --------------------------------EDKYFINIAAGGSLTELTYSVPSQL--K-----SMF-GYLAYLAKGAE 171 (334)
T ss_pred --------------------------------CCcEEEEEehhccchHHHHhcCHHH--H-----hhc-cHHHHHHHHHH
Confidence 1479999999999999998877543 1 133 88999887776
Q ss_pred cccccccccCCCcccccccceeEEEeeeccCCceEEeecCcceeEEEEcccCCCCCCCCCCCCChhhhhhcCCCCCcCCC
Q 013013 319 QGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADD 398 (451)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~i~~v~~~~~~~~~i~~~~~~ivv~N~~~~ggG~~~wg~~~~~~~~~~~~~~a~~dD 398 (451)
.++... .+++++. ++ + ... ..+..+++++|.++||||+.+ . |+++++|
T Consensus 172 ~l~~~~-------------~~~~~i~-~d--~-~~~--~~~~~~~~v~n~~~~Gg~~~~----~---------p~a~~~D 219 (334)
T PRK13055 172 LLPRVS-------------PVPVRIT-YD--E-GVF--EGKISMFFLALTNSVGGFEQI----V---------PDAKLDD 219 (334)
T ss_pred HHHhcC-------------CeeEEEE-EC--C-EEE--EEEEEEEEEEcCcccCCcccc----C---------CCCcCCC
Confidence 643221 2334443 33 2 322 235788899999999999875 2 7899999
Q ss_pred CeEEEEEEcc--hhhHHHHHhhccC-c-------eEEeeeceEEEEEeCC--cchh
Q 013013 399 GLLEIFGLKQ--GWHASFVMVELIS-A-------KHIAQVLQSLQSFVCS--LSKQ 442 (451)
Q Consensus 399 GlLeVv~l~~--~~~~~~~~~~l~~-g-------~~l~Q~~~i~i~~~~~--~~~~ 442 (451)
|+|||+++++ .+++..++..+.. | .+..++++++|++..+ .++|
T Consensus 220 G~ldv~i~~~~~~~~~l~~~~~~~~~G~~~~~~~v~~~~~~~i~I~~~~~~~~~~~ 275 (334)
T PRK13055 220 GKFTLIIVKTANLFELLHLMALILNGGKHIDDPRVIYIKTSKLTIEPLGDDRLMVN 275 (334)
T ss_pred ceEEEEEEcCCCHHHHHHHHHHHHhCCCCCCCCcEEEEEccEEEEEeCCCCcceEe
Confidence 9999999988 3555554444433 3 4677899999998543 5554
No 9
>PRK13337 putative lipid kinase; Reviewed
Probab=100.00 E-value=7.9e-37 Score=306.21 Aligned_cols=259 Identities=17% Similarity=0.138 Sum_probs=194.2
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhH
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv 160 (451)
+++++|+||+||++++.+.+.++.+.|... .+++... .|++.+|++++++++. ..+.+.||++||||||
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~-~~~~~~~-----~t~~~~~a~~~a~~~~-----~~~~d~vvv~GGDGTl 70 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQA-GYETSAH-----ATTGPGDATLAAERAV-----ERKFDLVIAAGGDGTL 70 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHHc-CCEEEEE-----EecCCCCHHHHHHHHH-----hcCCCEEEEEcCCCHH
Confidence 689999999999988777788888877664 3454433 3456789999988653 2456899999999999
Q ss_pred HHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEEecCCCCcc
Q 013013 161 GWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVV 240 (451)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~~ 240 (451)
++|+|+|... ...+|||+||.||||||||+||+ |.++.++++ .+..|.++++|++++
T Consensus 71 ~~vv~gl~~~-----~~~~~lgiiP~GT~NdfAr~lgi----~~~~~~a~~----~i~~g~~~~vDlg~v---------- 127 (304)
T PRK13337 71 NEVVNGIAEK-----ENRPKLGIIPVGTTNDFARALHV----PRDIEKAAD----VIIEGHTVPVDIGKA---------- 127 (304)
T ss_pred HHHHHHHhhC-----CCCCcEEEECCcCHhHHHHHcCC----CCCHHHHHH----HHHcCCeEEEEEEEE----------
Confidence 9999999763 35689999999999999999998 666665554 456899999999754
Q ss_pred CCCCCCCCCccccccccccccCCCCcccccccceeEeEeecchhHHHhhhhhhccccCCCccccCCCcceeecccccccc
Q 013013 241 DPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQG 320 (451)
Q Consensus 241 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~r~~nkl~Y~~~g~~~~ 320 (451)
++++|+|.+|+|+||+|++...... | .++ ++++|+..++..+
T Consensus 128 ------------------------------n~~~fln~~g~G~~a~v~~~~~~~~--k-----~~~-G~~aY~~~~~~~l 169 (304)
T PRK13337 128 ------------------------------NNRYFINIAGGGRLTELTYEVPSKL--K-----TML-GQLAYYLKGIEML 169 (304)
T ss_pred ------------------------------CCEEEEeeehhhHHHHHHHhcCHHH--h-----cCc-ccHHHHHHHHHHH
Confidence 2479999999999999998876422 1 123 7899988776543
Q ss_pred cccccccCCCcccccccceeEEEeeeccCCceEEeecCcceeEEEEcccCCCCCCCCCCCCChhhhhhcCCCCCcCCCCe
Q 013013 321 WFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGL 400 (451)
Q Consensus 321 ~~~~~~~~~~~l~~~~~~~~~~i~~v~~~~~~~~~i~~~~~~ivv~N~~~~ggG~~~wg~~~~~~~~~~~~~~a~~dDGl 400 (451)
+.. ..+++++. ++ ++... .+...++++|.++||||+.+ . |+++++||+
T Consensus 170 ~~~-------------~~~~~~i~-~d---~~~~~--~~~~~~~v~n~~~~gg~~~~----~---------p~a~~~DG~ 217 (304)
T PRK13337 170 PSL-------------KATDVRIE-YD---GKLFQ--GEIMLFLLGLTNSVGGFEKL----A---------PDASLDDGY 217 (304)
T ss_pred hhC-------------CCceEEEE-EC---CeEEE--eEEEEEEEEcCcccCCcccc----C---------CcccCCCCe
Confidence 211 12334443 32 34332 35778999999999999875 2 789999999
Q ss_pred EEEEEEcc--hhhHHHHHhhccCc-------eEEeeeceEEEEEeCCcchhh
Q 013013 401 LEIFGLKQ--GWHASFVMVELISA-------KHIAQVLQSLQSFVCSLSKQK 443 (451)
Q Consensus 401 LeVv~l~~--~~~~~~~~~~l~~g-------~~l~Q~~~i~i~~~~~~~~~~ 443 (451)
|||++++. .+++..++..+..| .+..++++++|+.+++.++|.
T Consensus 218 ldv~iv~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~~~~~~~~~i 269 (304)
T PRK13337 218 FDLIIVKKANLAELIHIATLALRGEHIKHPKVIYTKANRIKVSSFDKMQLNL 269 (304)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHcCCcCCCCcEEEEEccEEEEEcCCCCeEEe
Confidence 99999987 45555555555444 467889999999988777664
No 10
>PRK00861 putative lipid kinase; Reviewed
Probab=100.00 E-value=2.1e-36 Score=302.43 Aligned_cols=258 Identities=19% Similarity=0.151 Sum_probs=189.3
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
+++++||+||.||++++.+.+++++..|.+. +++... .|+..+|+.++++++. ..+.+.||++|||||
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~--~~~~~~-----~t~~~~~a~~~a~~~~-----~~~~d~vv~~GGDGT 69 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEPE--MDLDIY-----LTTPEIGADQLAQEAI-----ERGAELIIASGGDGT 69 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHhc--CceEEE-----EccCCCCHHHHHHHHH-----hcCCCEEEEECChHH
Confidence 4689999999999998878888898888753 344332 3456788999998753 245689999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEEecCCCCc
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~ 239 (451)
+|+|+|+|.. .++|||+||+||||||||+||+ |.++.++++ .+..|+++++|++++
T Consensus 70 l~evv~~l~~-------~~~~lgviP~GTgNdfAr~lgi----~~~~~~a~~----~i~~g~~~~iDlg~v--------- 125 (300)
T PRK00861 70 LSAVAGALIG-------TDIPLGIIPRGTANAFAAALGI----PDTIEEACR----TILQGKTRRVDVAYC--------- 125 (300)
T ss_pred HHHHHHHHhc-------CCCcEEEEcCCchhHHHHHcCC----CCCHHHHHH----HHHcCCcEEeeEEEE---------
Confidence 9999999975 4689999999999999999999 666655555 456899999999754
Q ss_pred cCCCCCCCCCccccccccccccCCCCcccccccceeEeEeecchhHHHhhhhhhccccCCCccccCCCcceeeccccccc
Q 013013 240 VDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQ 319 (451)
Q Consensus 240 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~r~~nkl~Y~~~g~~~ 319 (451)
++++|+|.+|+||||+|++..++.. | .++ |+++|+..+++.
T Consensus 126 -------------------------------n~~~fin~a~~G~~a~v~~~~~~~~--k-----~~~-G~~aY~~~~l~~ 166 (300)
T PRK00861 126 -------------------------------NGQPMILLAGIGFEAETVEEADREA--K-----NRF-GILAYILSGLQQ 166 (300)
T ss_pred -------------------------------CCEEEEEEEeccHHHHHHHHhhHHH--H-----hcc-cHHHHHHHHHHH
Confidence 2469999999999999999887432 1 123 789999888776
Q ss_pred ccccccccCCCcccccccceeEEEeeeccCCceEEeecCcceeEEEEcccCCCCCCCCCCCCChhhhhhcCCCCCcCCCC
Q 013013 320 GWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDG 399 (451)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~~~~~i~~v~~~~~~~~~i~~~~~~ivv~N~~~~ggG~~~wg~~~~~~~~~~~~~~a~~dDG 399 (451)
++... .++++++ ++ ++.+. .+...++++|+++|++.+. .| +|+++++||
T Consensus 167 l~~~~-------------~~~~~i~-~d---g~~~~--~~~~~i~v~N~~~~~~~~~-~g-----------~p~a~~~DG 215 (300)
T PRK00861 167 LRELE-------------SFEVEIE-TE---DQIIT--TNAVAVTVANAAPPTSVLA-QG-----------PGAVIPDDG 215 (300)
T ss_pred hccCC-------------CeeEEEE-EC---CeEEE--EEEEEEEEECCCCcccccc-cC-----------CCCCCCCCc
Confidence 43221 2344443 33 23332 3577899999986643221 11 257899999
Q ss_pred eEEEEEEcch--hhHHH----HHhhccCc-------eEEeeeceEEEEEeCCcchhh
Q 013013 400 LLEIFGLKQG--WHASF----VMVELISA-------KHIAQVLQSLQSFVCSLSKQK 443 (451)
Q Consensus 400 lLeVv~l~~~--~~~~~----~~~~l~~g-------~~l~Q~~~i~i~~~~~~~~~~ 443 (451)
+|||++++.. +++.. ++..+..| .+..++++++|+++++.++|.
T Consensus 216 ~ldv~iv~~~~~~~~l~~~~~l~~~~~~g~~~~~~~v~~~~~~~i~I~~~~~~~~~~ 272 (300)
T PRK00861 216 LLDVTIVAPKNLAEAVAASYHLLQTALQGNPAERDDIGYLRAKQVKITTDPPQKVVI 272 (300)
T ss_pred eEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCCCCceEEEEccEEEEEeCCCeEEEE
Confidence 9999999873 44432 23222333 467899999999988877763
No 11
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=100.00 E-value=1.3e-36 Score=303.11 Aligned_cols=258 Identities=17% Similarity=0.133 Sum_probs=185.1
Q ss_pred eEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhHH
Q 013013 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVG 161 (451)
Q Consensus 82 ~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv~ 161 (451)
++++|+||+||..+ .+.++.+.|... .+++.+. .|+..+|++++++++. ..+.+.||++|||||||
T Consensus 1 ~~~~I~N~~~~~~~---~~~~~~~~l~~~-g~~~~v~-----~t~~~~~a~~~a~~~~-----~~~~d~vv~~GGDGTi~ 66 (293)
T TIGR03702 1 KALLILNGKQADNE---DVREAVGDLRDE-GIQLHVR-----VTWEKGDAQRYVAEAL-----ALGVSTVIAGGGDGTLR 66 (293)
T ss_pred CEEEEEeCCccchh---HHHHHHHHHHHC-CCeEEEE-----EecCCCCHHHHHHHHH-----HcCCCEEEEEcCChHHH
Confidence 47899999988432 445556666654 4555443 2456789999998753 24568999999999999
Q ss_pred HHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEEecCCCCccC
Q 013013 162 WVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVD 241 (451)
Q Consensus 162 ~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~~~ 241 (451)
+|+|+|..... ...+|||+||+||||||||+||+ |.++.++++ .+..|+++++|++.+.
T Consensus 67 ev~ngl~~~~~---~~~~~lgiiP~GTgNdfAr~l~i----p~~~~~a~~----~i~~g~~~~iDlg~v~---------- 125 (293)
T TIGR03702 67 EVATALAQIRD---DAAPALGLLPLGTANDFATAAGI----PLEPAKALK----LALNGAAQPIDLARVN---------- 125 (293)
T ss_pred HHHHHHHhhCC---CCCCcEEEEcCCchhHHHHhcCC----CCCHHHHHH----HHHhCCceeeeEEEEC----------
Confidence 99999975321 23579999999999999999999 666655554 4567999999997541
Q ss_pred CCCCCCCCccccccccccccCCCCcccccccceeEeEeecchhHHHhhhhhhccccCCCccccCCCcceeeccccccccc
Q 013013 242 PPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGW 321 (451)
Q Consensus 242 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~r~~nkl~Y~~~g~~~~~ 321 (451)
..+||+|.+|+||||+|++..++.. | +..|+++|+..+++.++
T Consensus 126 -----------------------------~~~~f~n~~~~G~da~v~~~~~~~~--k------~~~G~~aY~~~~l~~l~ 168 (293)
T TIGR03702 126 -----------------------------GKHYFLNMATGGFGTRVTTETSEKL--K------KALGGAAYLITGLTRFS 168 (293)
T ss_pred -----------------------------CccEEEEEeecccchHhhhhhhHHH--H------hccchHHHHHHHHHHHh
Confidence 0269999999999999999887532 1 22388999988777643
Q ss_pred ccccccCCCcccccccceeEEEeeeccCCceEEeecCcceeEEEEcccCCCCCCCCCCCCChhhhhhcCCCCCcCCCCeE
Q 013013 322 FLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGLL 401 (451)
Q Consensus 322 ~~~~~~~~~~l~~~~~~~~~~i~~v~~~~~~~~~i~~~~~~ivv~N~~~~ggG~~~wg~~~~~~~~~~~~~~a~~dDGlL 401 (451)
.. ..++++++ .++ +.. ..+...++++|.+|||||+.+ . |+|+++||+|
T Consensus 169 ~~-------------~~~~~~i~---~~~-~~~--~~~~~~~~v~N~~~~GGg~~i----~---------P~A~~~DG~L 216 (293)
T TIGR03702 169 EL-------------TAASCEFR---GPD-FHW--EGDFLALGIGNGRQAGGGQVL----C---------PDALINDGLL 216 (293)
T ss_pred hC-------------CCeEEEEE---ECC-EEE--EeeEEEEEEECCCcCCCCcee----C---------CCCccCCceE
Confidence 11 12334433 222 222 235788999999999999975 2 7899999999
Q ss_pred EEEEEcchhhHHHHHhhccCce-----EEeeeceEEEEEeCCcchhh
Q 013013 402 EIFGLKQGWHASFVMVELISAK-----HIAQVLQSLQSFVCSLSKQK 443 (451)
Q Consensus 402 eVv~l~~~~~~~~~~~~l~~g~-----~l~Q~~~i~i~~~~~~~~~~ 443 (451)
||++++..+.+..++..+.+|. ...++++++|+++++.++|.
T Consensus 217 dv~~v~~~~~~~~~l~~~~~g~~~~~~~~~~~~~i~i~~~~~~~~~v 263 (293)
T TIGR03702 217 DVRILPAPELLPATLSTLFGGDKNPEFVRARLPWLEIEAPQPLTFNL 263 (293)
T ss_pred EEEEeCCHHHHHHHHHHHhcCCCCCcEEEEEcCEEEEEeCCCcEEEE
Confidence 9999988555544444444442 24457789999888777764
No 12
>PRK13054 lipid kinase; Reviewed
Probab=100.00 E-value=4.1e-36 Score=300.51 Aligned_cols=260 Identities=20% Similarity=0.160 Sum_probs=188.1
Q ss_pred CCCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 79 ~~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
+++++++|+||++++. +.+..+...|... .+++.+. .|+..+|+.++++++. ..+.+.||++||||
T Consensus 2 ~~~~~~~i~N~~~~~~---~~~~~~~~~l~~~-g~~~~v~-----~t~~~~~a~~~a~~~~-----~~~~d~vvv~GGDG 67 (300)
T PRK13054 2 TFPKSLLILNGKSAGN---EELREAVGLLREE-GHTLHVR-----VTWEKGDAARYVEEAL-----ALGVATVIAGGGDG 67 (300)
T ss_pred CCceEEEEECCCccch---HHHHHHHHHHHHc-CCEEEEE-----EecCCCcHHHHHHHHH-----HcCCCEEEEECCcc
Confidence 4678999999998643 4555566666654 3454432 3456788999988753 24578999999999
Q ss_pred hHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEEecCCCC
Q 013013 159 TVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGE 238 (451)
Q Consensus 159 Tv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~ 238 (451)
|||+|+|+|.+... ..++|||+||+||||||||+||+ |.++.++++ .+..|++++||++++.
T Consensus 68 Tl~evv~~l~~~~~---~~~~~lgiiP~GTgNdfar~lgi----~~~~~~a~~----~i~~g~~~~iDlg~v~------- 129 (300)
T PRK13054 68 TINEVATALAQLEG---DARPALGILPLGTANDFATAAGI----PLEPDKALK----LAIEGRAQPIDLARVN------- 129 (300)
T ss_pred HHHHHHHHHHhhcc---CCCCcEEEEeCCcHhHHHHhcCC----CCCHHHHHH----HHHhCCceEEEEEEEc-------
Confidence 99999999986321 24689999999999999999998 666666554 4567999999998651
Q ss_pred ccCCCCCCCCCccccccccccccCCCCcccccccc-eeEeEeecchhHHHhhhhhhccccCCCccccCCCcceeeccccc
Q 013013 239 VVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEG-VFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSC 317 (451)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~r~~nkl~Y~~~g~ 317 (451)
++ ||+|.+|+||||+|+++.++.. | .+ .|++.|...++
T Consensus 130 ---------------------------------~~~~f~n~~~~G~~a~v~~~~~~~~--k-----~~-~G~~~Y~~~~l 168 (300)
T PRK13054 130 ---------------------------------DRTYFINMATGGFGTRVTTETPEKL--K-----AA-LGGVAYLIHGL 168 (300)
T ss_pred ---------------------------------CceEEEEEeecchhHHHHHhhHHHH--H-----hc-cchHHHHHHHH
Confidence 24 9999999999999999886522 1 12 38899988887
Q ss_pred ccccccccccCCCcccccccceeEEEeeeccCCceEEeecCcceeEEEEcccCCCCCCCCCCCCChhhhhhcCCCCCcCC
Q 013013 318 TQGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHAD 397 (451)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~~~~~~i~~v~~~~~~~~~i~~~~~~ivv~N~~~~ggG~~~wg~~~~~~~~~~~~~~a~~d 397 (451)
+.++... .+++++. .+. +.. ..++..+.|+|.++||||+.+ . |+++++
T Consensus 169 ~~l~~~~-------------~~~~~i~-~d~---~~~--~~~~~~~~v~N~~~~ggg~~~----~---------p~a~~~ 216 (300)
T PRK13054 169 MRMDTLK-------------PDRCEIR-GPD---FHW--QGDALVIGIGNGRQAGGGQQL----C---------PEALIN 216 (300)
T ss_pred HHHhhCC-------------CeEEEEE-eCC---cEE--EeeEEEEEEECCCcCCCCccc----C---------CCCcCC
Confidence 7643211 2344443 222 222 246889999999999999875 2 789999
Q ss_pred CCeEEEEEEcchhhHHHHHhhcc-------CceEEeeeceEEEEEeCCcchhh
Q 013013 398 DGLLEIFGLKQGWHASFVMVELI-------SAKHIAQVLQSLQSFVCSLSKQK 443 (451)
Q Consensus 398 DGlLeVv~l~~~~~~~~~~~~l~-------~g~~l~Q~~~i~i~~~~~~~~~~ 443 (451)
||+|||+++++.+.+...+..+. ...+..++++++|++.++.+.|.
T Consensus 217 DG~ldv~~~~~~~~~l~~l~~~~~g~~~~~~~v~~~~~~~v~i~~~~~~~~~i 269 (300)
T PRK13054 217 DGLLDLRILPAPQELLPTLLSTLTGGSEDNPNIIRARLPWLEIQAPHELTFNL 269 (300)
T ss_pred CCeEEEEEECCHHHHHHHHHHHHhCCCCCCCcEEEEECCEEEEEcCCCCEEEe
Confidence 99999999988333333333332 22467889999999987777664
No 13
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=296.32 Aligned_cols=260 Identities=22% Similarity=0.310 Sum_probs=201.2
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
++++.+|+||.||++++.+.++++++.|..+ .+++.... |+..+|+.++++++. ..+.|.||++|||||
T Consensus 2 ~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~-g~~~~~~~-----t~~~g~a~~~a~~a~-----~~~~D~via~GGDGT 70 (301)
T COG1597 2 MKKALLIYNPTSGKGKAKKLLREVEELLEEA-GHELSVRV-----TEEAGDAIEIAREAA-----VEGYDTVIAAGGDGT 70 (301)
T ss_pred CceEEEEEcccccccchhhHHHHHHHHHHhc-CCeEEEEE-----eecCccHHHHHHHHH-----hcCCCEEEEecCcch
Confidence 5789999999999999999999999999875 45665543 334489999999875 357899999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEEecCCCCc
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~ 239 (451)
||+|+|+|.+. ..+|||+||+||+|||||+||| |.+ .+.++++.+.+|+++.+|++++
T Consensus 71 v~evingl~~~------~~~~LgilP~GT~NdfAr~Lgi----p~~---~~~~Al~~i~~g~~~~vDlg~~--------- 128 (301)
T COG1597 71 VNEVANGLAGT------DDPPLGILPGGTANDFARALGI----PLD---DIEAALELIKSGETRKVDLGQV--------- 128 (301)
T ss_pred HHHHHHHHhcC------CCCceEEecCCchHHHHHHcCC----Cch---hHHHHHHHHHcCCeEEEeehhc---------
Confidence 99999999974 2233999999999999999999 653 2445556678999999999621
Q ss_pred cCCCCCCCCCccccccccccccCCCCcccccccc-eeEeEeecchhHHHhhhhhhccccCCCccccCCCcceeecccccc
Q 013013 240 VDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEG-VFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCT 318 (451)
Q Consensus 240 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~r~~nkl~Y~~~g~~ 318 (451)
+.+ ||+|.+|+|++|++++..+..|++ ++ +.+.|+..++.
T Consensus 129 -------------------------------~~~~~fin~a~~G~~a~~~~~~~~~~k~-------~~-g~~~y~~~~~~ 169 (301)
T COG1597 129 -------------------------------NGRRYFINNAGIGFDAEVVAAVEEERKK-------GF-GRLAYALAGLA 169 (301)
T ss_pred -------------------------------CCcceEEEEeecchhHHHHHhhcHHHHh-------cc-chHHHHHHHHH
Confidence 124 999999999999999999977632 23 78899988877
Q ss_pred cccccccccCCCcccccccceeEEEeeeccCCceEEeecCcceeEEEEcccCCCCCCCCCCCCChhhhhhcCCCCCcCCC
Q 013013 319 QGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADD 398 (451)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~i~~v~~~~~~~~~i~~~~~~ivv~N~~~~ggG~~~wg~~~~~~~~~~~~~~a~~dD 398 (451)
.+....+ +.++++ ++...++ .....+++.|.++++|+..+ + |++.++|
T Consensus 170 ~l~~~~~-------------~~~~i~-~d~~~~~-----~~~~~~~~~~~~~~gg~~~~----~---------p~a~~~d 217 (301)
T COG1597 170 VLARLKP-------------FRIEIE-YDGKTFE-----GEALALLVFNGNSYGGGMKL----A---------PDASLDD 217 (301)
T ss_pred hccccCC-------------CcEEEE-EcCcEEE-----EEEEEEEEecCccccccccc----C---------CcCCCCC
Confidence 6533222 334444 4443332 34788888888899998875 3 7899999
Q ss_pred CeEEEEEEcc--hhhHHHHHhhccCc-------eEEeeeceEEEEEeCCcchhh
Q 013013 399 GLLEIFGLKQ--GWHASFVMVELISA-------KHIAQVLQSLQSFVCSLSKQK 443 (451)
Q Consensus 399 GlLeVv~l~~--~~~~~~~~~~l~~g-------~~l~Q~~~i~i~~~~~~~~~~ 443 (451)
|+|++++++. .+.+..++..+..| ....+++.++|+++.+++.|+
T Consensus 218 G~l~~~i~~~~~~~~~~~l~~~~~~G~~~~~~~v~~~~~~~~~i~~~~~~~~~~ 271 (301)
T COG1597 218 GLLDVYILKPQSLLELLALLPDLLRGKHLENPDVEYLRAKKLEITSDPPIPVNL 271 (301)
T ss_pred ceEEEEEEccccHHHHHHHHHHHhCCCccCCCCeEEEeccEEEEEcCCCceEee
Confidence 9999999998 45566666666655 567889999999997777654
No 14
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=100.00 E-value=3.3e-35 Score=292.56 Aligned_cols=260 Identities=17% Similarity=0.188 Sum_probs=189.5
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
++++++|+||.||++++.+.++++++.|.... +++.... |+..+++++++++.. ..+.+.||++|||||
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~-~~~~~~~-----t~~~~~~~~~~~~~~-----~~~~d~ivv~GGDGT 69 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLREEG-MEIHVRV-----TWEKGDAARYVEEAR-----KFGVDTVIAGGGDGT 69 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHHCC-CEEEEEE-----ecCcccHHHHHHHHH-----hcCCCEEEEECCCCh
Confidence 36899999999999888888889998887654 3433321 223455666655321 235689999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEEecCCCCc
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~ 239 (451)
+++|+++|... ...+|||+||+||+|||||+||+ |.++.+++ +.+.+++.+++|++++
T Consensus 70 l~~v~~~l~~~-----~~~~~lgiiP~Gt~N~~a~~l~i----~~~~~~~~----~~l~~~~~~~~Dlg~v--------- 127 (293)
T TIGR00147 70 INEVVNALIQL-----DDIPALGILPLGTANDFARSLGI----PEDLDKAA----KLVIAGDARAIDMGQV--------- 127 (293)
T ss_pred HHHHHHHHhcC-----CCCCcEEEEcCcCHHHHHHHcCC----CCCHHHHH----HHHHcCCceEEEEEEE---------
Confidence 99999999753 24579999999999999999998 55655554 4466899999999754
Q ss_pred cCCCCCCCCCccccccccccccCCCCcccccccce-eEeEeecchhHHHhhhhhhccccCCCccccCCCcceeecccccc
Q 013013 240 VDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGV-FYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCT 318 (451)
Q Consensus 240 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~r~~nkl~Y~~~g~~ 318 (451)
++++ |+|++|+|+||++++.++... +.++ |+++|+..++.
T Consensus 128 -------------------------------~~~~~fln~~g~G~~a~v~~~~~~~~-------k~~~-g~~~Y~~~~l~ 168 (293)
T TIGR00147 128 -------------------------------NKQYCFINMAGGGFGTEITTETPEKL-------KAAL-GSLSYILSGLM 168 (293)
T ss_pred -------------------------------CCeEEEEEEEeechhhHhHhhCCHHH-------Hhcc-chHHHHHHHHH
Confidence 2468 999999999999998886432 1234 88999988776
Q ss_pred cccccccccCCCcccccccceeEEEeeeccCCceEEeecCcceeEEEEcccCCCCCCCCCCCCChhhhhhcCCCCCcCCC
Q 013013 319 QGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADD 398 (451)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~i~~v~~~~~~~~~i~~~~~~ivv~N~~~~ggG~~~wg~~~~~~~~~~~~~~a~~dD 398 (451)
.++... .+++++. ++ ++.++ .+...++++|.++||||+.++ |.++++|
T Consensus 169 ~l~~~~-------------~~~~~i~-~d---~~~~~--~~~~~~~v~n~~~~gg~~~~~-------------p~a~~~D 216 (293)
T TIGR00147 169 RMDTLQ-------------PFRCEIR-GE---GEHWQ--GEAVVFLVGNGRQAGGGQKLA-------------PDASIND 216 (293)
T ss_pred HHhhCC-------------CeeEEEE-EC---CeEEE--eeEEEEEEeCCcccCCCcccC-------------CccccCC
Confidence 543211 2334443 33 24333 246777888999999998863 6889999
Q ss_pred CeEEEEEEcch--hhHHHHHhhccCc-------eEEeeeceEEEEEeCCcchhh
Q 013013 399 GLLEIFGLKQG--WHASFVMVELISA-------KHIAQVLQSLQSFVCSLSKQK 443 (451)
Q Consensus 399 GlLeVv~l~~~--~~~~~~~~~l~~g-------~~l~Q~~~i~i~~~~~~~~~~ 443 (451)
|+|||+++++. +.+..++..+..| .+..|+++++|+.+++.++|.
T Consensus 217 G~l~v~~v~~~~~~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~i~~~~~~~~~i 270 (293)
T TIGR00147 217 GLLDLRIFTNDNLLPALVLTLMSDEGKHTDNPNIIYGKASRIDIQTPHKITFNL 270 (293)
T ss_pred CeeEEEEEcCCCHHHHHHHHHHHhcCCCCCCCcEEEEEccEEEEEcCCCcEEEe
Confidence 99999999873 4444444444333 578899999999988877764
No 15
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=100.00 E-value=1.8e-34 Score=304.99 Aligned_cols=276 Identities=16% Similarity=0.157 Sum_probs=189.1
Q ss_pred CCCCeEEEEEcCCCCCCChhHHHH-HHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 013013 78 PPEAPMVVFINSRSGGRHGPELKE-RLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (451)
Q Consensus 78 ~~~~~~lVivNP~SG~~~g~~~~~-~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GG 156 (451)
.++++++||+||.||++++.+.+. .++++|... .+++.+. .|++++|+++++++++ ..+.+.||++||
T Consensus 109 ~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~-gi~~~v~-----~T~~~ghA~~la~~~~-----~~~~D~VV~vGG 177 (481)
T PLN02958 109 GRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDA-DIQLTIQ-----ETKYQLHAKEVVRTMD-----LSKYDGIVCVSG 177 (481)
T ss_pred cCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHc-CCeEEEE-----eccCccHHHHHHHHhh-----hcCCCEEEEEcC
Confidence 578899999999999999888764 688888765 3455443 4567899999998764 356789999999
Q ss_pred chhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhc----CCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEE
Q 013013 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSF----GWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (451)
Q Consensus 157 DGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsL----g~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v 232 (451)
|||+|+|+|+|.....+....++|||+||+||||||||+| |+ |.++.+|+. .|..|+.+++|++.+.-
T Consensus 178 DGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gi----p~~~~~A~~----~I~~g~~~~vDlg~v~~ 249 (481)
T PLN02958 178 DGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGE----PCSATNAVL----AIIRGHKCSLDVATILQ 249 (481)
T ss_pred CCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCC----CcCHHHHHH----HHHcCCceEEeEEEEEc
Confidence 9999999999986432211346999999999999999999 76 666655554 46689999999987631
Q ss_pred ecCCCCccCCCCCCCCCccccccccccccCCCCcccccccc-eeEeEeecchhHHHhhhhhhccccCCCccccCCCccee
Q 013013 233 QMPSGEVVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEG-VFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLI 311 (451)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~r~~nkl~ 311 (451)
+ ..+ +|+|.+|+||||+|....++. |+.|++.
T Consensus 250 ----~---------------------------------~~~~f~vn~~g~GfdAdV~~~se~k----------r~lG~lr 282 (481)
T PLN02958 250 ----G---------------------------------ETKFFSVLMLAWGLVADIDIESEKY----------RWMGSAR 282 (481)
T ss_pred ----C---------------------------------CceEEEEEeeeeehhhhhhcccccc----------cccchHH
Confidence 0 013 347999999999997654322 2338899
Q ss_pred ecccccccccccccccCCCccccc-----c---cceeEEEe------------------e--eccCCceEEeecCcceeE
Q 013013 312 YSGYSCTQGWFLTPCISDPNLRGL-----K---NILRMHVK------------------K--VNCSEWEQVAVPKSVRAI 363 (451)
Q Consensus 312 Y~~~g~~~~~~~~~~~~~~~l~~~-----~---~~~~~~i~------------------~--v~~~~~~~~~i~~~~~~i 363 (451)
|..++++.++....+.. .+..+ . ...++... . ++..+|+.+ .....++
T Consensus 283 Y~~~~l~~l~~~r~y~~--~I~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~--~~~fl~v 358 (481)
T PLN02958 283 LDFYGLQRILCLRQYNG--RISFVPAPGFEAYGEPTSYNGESTSKEESGKDKQHGYQGPDVKLENLDWRTI--KGPFVSV 358 (481)
T ss_pred HHHHHHHHHHhcCCcce--EEEEEeccccccccccccccccccccccccccccccccCCccccCCccceEe--ecceeEE
Confidence 99888877543322100 00000 0 00000000 0 001123322 1223445
Q ss_pred EEEcccCCCCCCCCCCCCChhhhhhcCCCCCcCCCCeEEEEEEcch--hhHHHHHhhccCc-------eEEeeeceEEEE
Q 013013 364 VALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGLLEIFGLKQG--WHASFVMVELISA-------KHIAQVLQSLQS 434 (451)
Q Consensus 364 vv~N~~~~ggG~~~wg~~~~~~~~~~~~~~a~~dDGlLeVv~l~~~--~~~~~~~~~l~~g-------~~l~Q~~~i~i~ 434 (451)
.++|.++||||+.+ + |.|+++||+|||+++++. +.++.++..+..| .+..++++++|+
T Consensus 359 ~v~N~~~~Ggg~~i----a---------P~A~l~DG~LDlviv~~~s~~~lL~~l~~~~~G~h~~~~~V~~~k~k~~~I~ 425 (481)
T PLN02958 359 WLHNVPWGGEDTLA----A---------PDAKFSDGYLDLILIKDCPKLALLALMTKLSDGTHVKSPYVMYLKVKAFVLE 425 (481)
T ss_pred eeccCcccCCCccc----C---------CcccCCCCeEEEEEEcCCCHHHHHHHHHHHhCCCccCCCceEEEEEEEEEEE
Confidence 69999999999875 3 789999999999999984 4455555555444 457899999999
Q ss_pred Ee
Q 013013 435 FV 436 (451)
Q Consensus 435 ~~ 436 (451)
..
T Consensus 426 ~~ 427 (481)
T PLN02958 426 PG 427 (481)
T ss_pred EC
Confidence 74
No 16
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=99.97 E-value=3.8e-32 Score=248.39 Aligned_cols=156 Identities=33% Similarity=0.520 Sum_probs=135.3
Q ss_pred eeEeEeecchhHHHhhhhhhccccCCCccccCCCcceeecccccccccccccccCCCcccccccceeEEEeeeccCCceE
Q 013013 274 VFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQ 353 (451)
Q Consensus 274 ~f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~r~~nkl~Y~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~i~~v~~~~~~~ 353 (451)
+|+||||||+||+|+++||+.|+++|++|++|+.||++|+.+|++++| ..+|.+ +.+.+++ .+ ||+.
T Consensus 1 v~~NYfsiG~DA~ia~~Fh~~R~~~P~~f~sr~~NK~~Y~~~g~k~~~-~~~~~~------~~~~i~l-----~~-dg~~ 67 (161)
T PF00609_consen 1 VMNNYFSIGVDAQIALGFHHSREKNPEKFNSRLLNKLWYAFFGFKALF-QRSCKN------LPKKIEL-----EV-DGKE 67 (161)
T ss_pred CeEecccccHhhHHHHHHhhccccChhhhccHHHHHHHHHHHHHHHHH-hchhcC------chhhccc-----cc-CCee
Confidence 489999999999999999999999999999999999999999999987 555542 3222332 22 3688
Q ss_pred EeecCcceeEEEEcccCCCCCCCCCCCCChhhhhhcCCCCCcCCCCeEEEEEEcchhhHHHHHhhccCceEEeeeceEEE
Q 013013 354 VAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGLLEIFGLKQGWHASFVMVELISAKHIAQVLQSLQ 433 (451)
Q Consensus 354 ~~i~~~~~~ivv~N~~~~ggG~~~wg~~~~~~~~~~~~~~a~~dDGlLeVv~l~~~~~~~~~~~~l~~g~~l~Q~~~i~i 433 (451)
++++.+..+|+++|+|+|+||.++|+..++.... +.|..++++||+|||+++++.+|++.++.++.+++||+|++.|+|
T Consensus 68 ~~lp~~~~~iv~lNIpSy~gG~~~W~~~~~~~~~-~~~~~~~~~Dg~lEVvg~~~~~hl~~~~~g~~~~~rl~Q~~~i~i 146 (161)
T PF00609_consen 68 VDLPSSLESIVFLNIPSYGGGVDLWGNSKPDRSK-LKFKKQSMDDGKLEVVGFRGSFHLGQIQAGLSSAKRLAQGRPIRI 146 (161)
T ss_pred EeeecceeEEEEEccccccCCcccccCCcccccc-cccccccccCceEEEEEEcCchhhhhhhhccCCceEeecCCEEEE
Confidence 8888789999999999999999999976643322 457789999999999999999999999999999999999999999
Q ss_pred EEeC-Ccchhh
Q 013013 434 SFVC-SLSKQK 443 (451)
Q Consensus 434 ~~~~-~~~~~~ 443 (451)
++.+ ..|+|+
T Consensus 147 ~~~~~~~~~Qv 157 (161)
T PF00609_consen 147 ETKENKVPFQV 157 (161)
T ss_pred EECCCceeEEe
Confidence 9999 999985
No 17
>PLN02204 diacylglycerol kinase
Probab=99.96 E-value=7.4e-29 Score=262.79 Aligned_cols=193 Identities=13% Similarity=0.030 Sum_probs=141.2
Q ss_pred CCCCCCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEc
Q 013013 76 VQPPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAG 155 (451)
Q Consensus 76 ~~~~~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~G 155 (451)
...++++++|||||.||++++.+.++++..+|.... +++.+. +|+.++|+.++++++.+. +....|.||++|
T Consensus 155 ~~~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~-i~~~v~-----~T~~aghA~d~~~~~~~~--~l~~~D~VVaVG 226 (601)
T PLN02204 155 EVGRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAK-VKTKVI-----VTERAGHAFDVMASISNK--ELKSYDGVIAVG 226 (601)
T ss_pred ccCCCceEEEEECCCCCCcchHHHHHHHHHHHHHcC-CeEEEE-----EecCcchHHHHHHHHhhh--hccCCCEEEEEc
Confidence 456788999999999999999999999999997653 344432 466789999998765321 135678999999
Q ss_pred CchhHHHHHHHhhhccc-------------------------------------C-------------------------
Q 013013 156 GDGTVGWVLGSVGELNK-------------------------------------Q------------------------- 173 (451)
Q Consensus 156 GDGTv~~Vln~L~~~~~-------------------------------------~------------------------- 173 (451)
||||+|||+|+|...+. +
T Consensus 227 GDGt~nEVlNGL~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (601)
T PLN02204 227 GDGFFNEILNGYLLSRLKVPYPPSPSDSVHSVQSRGSSSVHEPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEGDQ 306 (601)
T ss_pred CccHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999973210 0
Q ss_pred -----CCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEEecCCCCccCCCCCCCC
Q 013013 174 -----GREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPPHSLKP 248 (451)
Q Consensus 174 -----~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~~~~~~~~~~ 248 (451)
....+++|||||+|||||||+++.. +.++..++. .|..|+.+.+|+++|.-.. ..
T Consensus 307 ~~~~~~~~~~~~lGIIPaGSgN~~a~~~~g----~~dp~taa~----~Ii~G~~~~lDig~V~~~~-~~----------- 366 (601)
T PLN02204 307 DSDFPFPNERFRFGIIPAGSTDAIVMCTTG----ERDPVTSAL----HIILGRRVCLDIAQVVRWK-TT----------- 366 (601)
T ss_pred cccccccCCCceEEEECCccHHHHHHHccC----CCCHHHHHH----HHHhCCCeEeeEEEEeccc-cc-----------
Confidence 0024588999999999999999865 556555543 4668999999999874200 00
Q ss_pred CccccccccccccCCCCcccccccceeEeEeecchhHHHhhhhhhccccCCCccccCCCcceeeccccccccc
Q 013013 249 TEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGW 321 (451)
Q Consensus 249 ~~~~~~~~g~~~~~~~~~~~~~~~~~f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~r~~nkl~Y~~~g~~~~~ 321 (451)
..+ +. ....+||.|.+|+||+|+|+...++.| +.|.+.|...+++.++
T Consensus 367 ---------~~~-~~-----~~~~ryf~s~ag~Gf~gdVi~esek~R----------~mG~~rY~~~g~k~~~ 414 (601)
T PLN02204 367 ---------STS-EI-----EPYVRYAASFAGYGFYGDVISESEKYR----------WMGPKRYDYAGTKVFL 414 (601)
T ss_pred ---------ccc-cc-----cccceEEEEEeecchHHHHHHHhhhhc----------ccchHHHHHHHHHHHH
Confidence 000 00 012489999999999999998865433 3488999998888754
No 18
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.91 E-value=9.6e-24 Score=220.20 Aligned_cols=172 Identities=20% Similarity=0.198 Sum_probs=133.2
Q ss_pred CCCCCCCeEEEEEcCCCCCCChhHHHH-HHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEE
Q 013013 75 GVQPPEAPMVVFINSRSGGRHGPELKE-RLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVV 153 (451)
Q Consensus 75 ~~~~~~~~~lVivNP~SG~~~g~~~~~-~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv 153 (451)
......++++||+||.+|+|++.+++. +++.+|....+ .+++ .+|++++||.+|++..+ ..++|.||+
T Consensus 174 ~~~~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i-~~ev-----v~T~~~~HArei~rt~d-----l~kyDgIv~ 242 (579)
T KOG1116|consen 174 DSLKRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGI-SFEV-----VLTTRPNHAREIVRTLD-----LGKYDGIVC 242 (579)
T ss_pred cccCCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCc-eEEE-----EEecCccHHHHHHHhhh-----ccccceEEE
Confidence 345678899999999999999988765 56667765433 3333 35779999999999874 688999999
Q ss_pred EcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEEe
Q 013013 154 AGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQ 233 (451)
Q Consensus 154 ~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v~ 233 (451)
+||||+++||+|||....+......+|||+||+||||+||.++.|..++ .-+..+. + .+..|....+|+..++..
T Consensus 243 vsGDGl~hEVlNGLl~R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~-~~~~~a~---l-~iirg~~t~~dv~~v~~~ 317 (579)
T KOG1116|consen 243 VSGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGP-DLPLLAT---L-LIIRGRLTPMDVSVVEYA 317 (579)
T ss_pred ecCCcCHHHhhhccccccchhhHhcCceeEeecCCccHHHHHhhcccCc-ccchHHH---H-HHHccCCCchheeehhhc
Confidence 9999999999999998765555678999999999999999999997763 1122222 2 356899999999766431
Q ss_pred cCCCCccCCCCCCCCCccccccccccccCCCCcccccccceeEeEeecchhHHHhhhhhhcccc
Q 013013 234 MPSGEVVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNE 297 (451)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~N~~sIG~DA~V~~~f~~~R~~ 297 (451)
+. ...+.++....||-|+|-...++.|..
T Consensus 318 ----------------------------~~-------~~~fSfLs~~wGlIADiDI~SEk~R~m 346 (579)
T KOG1116|consen 318 ----------------------------GK-------DRHFSFLSAAWGLIADVDIESEKYRWM 346 (579)
T ss_pred ----------------------------cC-------cceEEEEeeeeeeEEecccchHHHHhh
Confidence 00 125778999999999998888877743
No 19
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=99.87 E-value=1.6e-22 Score=178.00 Aligned_cols=125 Identities=30% Similarity=0.429 Sum_probs=84.7
Q ss_pred eEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCC-cEEEEEcCchhH
Q 013013 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQK-MRIVVAGGDGTV 160 (451)
Q Consensus 82 ~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~-~~Ivv~GGDGTv 160 (451)
+++||+||+||++++. ++++++.|.... +++... .|+..++++++++.. ..... +.||++|||||+
T Consensus 1 k~~vi~Np~sG~~~~~--~~~v~~~l~~~~-~~~~~~-----~t~~~~~~~~~~~~~-----~~~~~~~~ivv~GGDGTl 67 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--WKKVEPALRAAG-IDYEVI-----ETESAGHAEALARIL-----ALDDYPDVIVVVGGDGTL 67 (130)
T ss_dssp SEEEEEETTSTTSHHH--HHHHHHHHHHTT-CEEEEE-----EESSTTHHHHHHHHH-----HHTTS-SEEEEEESHHHH
T ss_pred CEEEEECCCCCCCchh--HHHHHHHHHHcC-CceEEE-----EEeccchHHHHHHHH-----hhccCccEEEEEcCccHH
Confidence 5899999999999887 477777776543 333332 223456777776622 13444 899999999999
Q ss_pred HHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHH-HHHHHHHHHhcCCeeeeeeeEE
Q 013013 161 GWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKS-AVKRTLQRASAGPICRLDSWHA 230 (451)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~-al~~~l~~i~~g~~~~iD~w~i 230 (451)
+++++++.+... ...+|||+||+||||||||+||+ +.++.. +.. .+..+...++|+.++
T Consensus 68 ~~vv~~l~~~~~---~~~~~l~iiP~GT~N~~ar~lg~----~~~~~~~a~~----~~~~~~~~~~d~~~v 127 (130)
T PF00781_consen 68 NEVVNGLMGSDR---EDKPPLGIIPAGTGNDFARSLGI----PSDPEANAAL----LIILGRVRKIDVGKV 127 (130)
T ss_dssp HHHHHHHCTSTS---SS--EEEEEE-SSS-HHHHHTT------SSHHH-HHH----HHHHSEEEEEEEEEE
T ss_pred HHHHHHHhhcCC---CccceEEEecCCChhHHHHHcCC----CCCcHHHHHH----HHHhCCCcEeEEEEe
Confidence 999999987532 23679999999999999999999 444433 222 233466678888764
No 20
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=99.84 E-value=1.4e-20 Score=164.84 Aligned_cols=101 Identities=47% Similarity=0.846 Sum_probs=75.3
Q ss_pred EEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhHHHH
Q 013013 84 VVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWV 163 (451)
Q Consensus 84 lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv~~V 163 (451)
+||+||+||++++.+++.+++..+.+.+++.... ....++.+++++ ....+.|+++|||||+++|
T Consensus 1 lvi~NP~sG~~~~~~~~~~~~~~l~~~~v~~t~~--------~~~~~~~~~~~~-------~~~~d~vvv~GGDGTi~~v 65 (124)
T smart00046 1 LVFVNPKSGGGKGVKLLRKFRLLLNPAQVFDLTK--------KGPAAALVIFRD-------LPKFDRVLVCGGDGTVGWV 65 (124)
T ss_pred CEEEcCCCCCCccHHHHHHHHHHcCCceEEEEec--------CChHHHHHHHhh-------cCcCCEEEEEccccHHHHH
Confidence 5899999999999889999988887644332221 122344445443 2346799999999999999
Q ss_pred HHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCC
Q 013013 164 LGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGS 201 (451)
Q Consensus 164 ln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~ 201 (451)
+|+|.+.... .+.+|||+||+||||||||+|||+..
T Consensus 66 vn~l~~~~~~--~~~~plgiiP~GTgNdfar~lgi~~~ 101 (124)
T smart00046 66 LNALDKRELP--LPEPPVAVLPLGTGNDLARSLGWGGG 101 (124)
T ss_pred HHHHHhcccc--cCCCcEEEeCCCChhHHHHHcCCCCC
Confidence 9999864210 12289999999999999999999654
No 21
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=99.81 E-value=1.1e-19 Score=165.91 Aligned_cols=155 Identities=31% Similarity=0.493 Sum_probs=117.1
Q ss_pred eeEeEeecchhHHHhhhhhhccccCCCccccCCCcceeecccccccccccccccCCCcccccccceeEEEeeeccCCceE
Q 013013 274 VFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQ 353 (451)
Q Consensus 274 ~f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~r~~nkl~Y~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~i~~v~~~~~~~ 353 (451)
+|+|++||||||+|++++++.|+++|.+++.++.|+++|+..+++.+|+.. +. ... ..+++. ++ ++.
T Consensus 1 ~~~N~~giGfDA~V~~~~~~~r~~~~~~~~~~~~g~l~Y~~~~l~~l~~~~-~~------~~~--~~~~i~-~d---g~~ 67 (160)
T smart00045 1 VMNNYFSIGVDAHIALEFHNKREANPEKFNSRLKNKMWYFELGTKDLFFRT-CK------DLH--ERIELE-CD---GVD 67 (160)
T ss_pred CccccccccHhHHHHHHHHHHhhcCchhhcccceeeeeeeecchHHhhhcc-cc------chh--hceEEE-EC---CEe
Confidence 489999999999999999998888887777777899999999988765311 10 000 123333 33 344
Q ss_pred EeecCcceeEEEEcccCCCCCCCCCCCCChhhhhhcCCCCCcCCCCeEEEEEEcchhhHHHHHhhccCceEEeeeceEE-
Q 013013 354 VAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGLLEIFGLKQGWHASFVMVELISAKHIAQVLQSL- 432 (451)
Q Consensus 354 ~~i~~~~~~ivv~N~~~~ggG~~~wg~~~~~~~~~~~~~~a~~dDGlLeVv~l~~~~~~~~~~~~l~~g~~l~Q~~~i~- 432 (451)
...+.+..+++++|+++||||+.+|++.++.| +++|+|+++||+|||+.+++.+++..++..-..+.++.|+++++
T Consensus 68 ~~~~~~~~~v~v~N~~~~ggG~~i~p~~~~~~---~~~p~a~~~DG~ldv~~~~~~~~~~~~~~~~~~~v~~~~~~~v~i 144 (160)
T smart00045 68 VDLPNSLEGIAVLNIPSYGGGTNLWGTTDKED---LNFSKQSHDDGLLEVVGLTGAMHMAQIRQVGLAGRRIAQCSEVRI 144 (160)
T ss_pred ccCCCCccEEEEECCCccccCcccccCCcccc---cccCCCCCCCceEEEEEEcCchhhhhhhhccCCCceeecCceEEE
Confidence 43333588999999999999999997655444 46899999999999999999877766643334678999999999
Q ss_pred -EEEeCCcchhhh
Q 013013 433 -QSFVCSLSKQKC 444 (451)
Q Consensus 433 -i~~~~~~~~~~~ 444 (451)
|+.+++.++|..
T Consensus 145 ~i~~~~~~~~q~D 157 (160)
T smart00045 145 TIKTSKTIPMQVD 157 (160)
T ss_pred EEecCCceeeecC
Confidence 666778888864
No 22
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.61 E-value=2.3e-15 Score=150.66 Aligned_cols=258 Identities=15% Similarity=0.092 Sum_probs=172.1
Q ss_pred CCCCCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 013013 77 QPPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (451)
Q Consensus 77 ~~~~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GG 156 (451)
..+++.++|||||.+|+|+|.++++.+..++ -+....+..++|+.++||.+...+..+ ++....|-||++||
T Consensus 155 ~~RPknllvFinPfgGkG~g~ki~e~V~~~F------~la~v~tkvivTErAnhA~d~~~ei~~--~~~~~yDGiv~VGG 226 (516)
T KOG1115|consen 155 VERPKNLLVFINPFGGKGNGSKIWETVSKIF------ILAKVNTKVIVTERANHAFDVMAEIQN--KELHTYDGIVAVGG 226 (516)
T ss_pred hcCCccEEEEEcCCCCCCcccchhhhhhhhE------EeeecceeEEEEccccchhhhhhhCCH--hhhhhcccEEEecC
Confidence 4578899999999999999999999966543 344444455688899999988766542 34567899999999
Q ss_pred chhHHHHHHHhhhcc-c-----CC------CCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeee
Q 013013 157 DGTVGWVLGSVGELN-K-----QG------REPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICR 224 (451)
Q Consensus 157 DGTv~~Vln~L~~~~-~-----~~------~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~ 224 (451)
||-.||+|+++.... . ++ -.+.+.+||||.|++|...-+--- ..|+ +..+| .|.-|+...
T Consensus 227 DG~FnEiL~G~llrtQ~~ag~~i~~P~~~lv~~~~RfGiIpAGStd~iv~~t~g----t~D~---~TSAl-HI~lG~~l~ 298 (516)
T KOG1115|consen 227 DGFFNEILNGYLLRTQEVAGFRIEDPDHPLVSERPRFGIIPAGSTDAIVMCTTG----TRDP---VTSAL-HIILGRKLF 298 (516)
T ss_pred chhHHHHHhhhhhhhhhhcCcccCCCCCcccCCCceeeeecCCCcCeEEEEecc----CCcc---cccee-eeEecccee
Confidence 999999999975431 1 10 124677999999999999987732 1232 22223 355699999
Q ss_pred eeeeEEEEecCCCCccCCCCCCCCCccccccccccccCCCCcccccccceeEeEeecchhHHHhhhhhhccccCCCcccc
Q 013013 225 LDSWHAVIQMPSGEVVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQG 304 (451)
Q Consensus 225 iD~w~i~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~ 304 (451)
+|+-.+.-. + ..-||-.|.+|.||.++|....+++|..
T Consensus 299 vDVctVht~----------------------------~-------kLiRysaSa~gYGFyGDvl~dSEKYRWm------- 336 (516)
T KOG1115|consen 299 VDVCTVHTI----------------------------E-------KLIRYSASAAGYGFYGDVLSDSEKYRWM------- 336 (516)
T ss_pred eeeeeeeec----------------------------c-------hheeeehhhhcccccchhhhhhhhhhcc-------
Confidence 998765310 0 1247888999999999999999987632
Q ss_pred CCCcceeecccccccccccccccCCCcccccccceeEEEe-----------e--eccCCceEEeecCcceeEEEEcccCC
Q 013013 305 PISNKLIYSGYSCTQGWFLTPCISDPNLRGLKNILRMHVK-----------K--VNCSEWEQVAVPKSVRAIVALNLHNY 371 (451)
Q Consensus 305 r~~nkl~Y~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~i~-----------~--v~~~~~~~~~i~~~~~~ivv~N~~~~ 371 (451)
+...|-..|++.+..... -.+.-.++..+-. + -+.+.|+ .+.++...|.++|+|..
T Consensus 337 ---Gp~RYDfsglKtflkH~~------YegeVsFlpa~sen~~qe~~~~g~~~~~~~k~Wq--~~~g~Fl~V~c~aipci 405 (516)
T KOG1115|consen 337 ---GPKRYDFSGLKTFLKHRS------YEGEVSFLPAESENPCQEPCPSGASLHTRSKTWQ--RNTGRFLKVLCRAIPCI 405 (516)
T ss_pred ---CchhhhhHHHHHHHhccc------cceEEEecccccCCchhccccccCCcccCcchhh--hhhhheeeeeEeecccc
Confidence 455687777776432221 1111111100000 0 1122343 23456778888898887
Q ss_pred CCCCCCCCCCChhhhhhcCCCCCcCCCCeEEEEEEcchhhHHH
Q 013013 372 ASGRNPWGNLSPEYLEKKGFVEAHADDGLLEIFGLKQGWHASF 414 (451)
Q Consensus 372 ggG~~~wg~~~~~~~~~~~~~~a~~dDGlLeVv~l~~~~~~~~ 414 (451)
..-..-| .+ |...++||-+++++.+...++.+
T Consensus 406 C~~~PrG--La---------P~T~LndGs~dLil~R~~SRF~f 437 (516)
T KOG1115|consen 406 CNSKPRG--LA---------PSTTLNDGSEDLILCRTKSRFLF 437 (516)
T ss_pred ccCCCCC--cC---------CccccCCCccceeeeecccchHH
Confidence 6643322 12 56889999999999998655443
No 23
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.25 E-value=4e-11 Score=120.35 Aligned_cols=136 Identities=21% Similarity=0.156 Sum_probs=92.2
Q ss_pred CCCCCCCeEEEEEcCCCCCCChhHHHHH-HHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEE
Q 013013 75 GVQPPEAPMVVFINSRSGGRHGPELKER-LQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVV 153 (451)
Q Consensus 75 ~~~~~~~~~lVivNP~SG~~~g~~~~~~-l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv 153 (451)
.+....++++|++||.+.++.....+.+ -..+|+- .++++.++++ .+.++++.|++..+ ...|.|+|
T Consensus 55 pp~~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHL-aG~~V~Ivkt-----d~~gqak~l~e~~~------t~~Dii~V 122 (535)
T KOG4435|consen 55 PPETRPKKVFVLVNPEANKRGCRDQFNKNALPLLHL-AGVQVDIVKT-----DNQGQAKALAEAVD------TQEDIIYV 122 (535)
T ss_pred CcccccceEEEEechhhccchhhhhhhcccchheee-ccceEEEEec-----CcHHHHHHHHHHhc------cCCCeEEE
Confidence 4556789999999999987654444333 2345553 3677777654 57799999998764 34499999
Q ss_pred EcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCC-CcHHHHHHHHHHHHhcCCe---eeeee
Q 013013 154 AGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFP-FAWKSAVKRTLQRASAGPI---CRLDS 227 (451)
Q Consensus 154 ~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~-~~~~~al~~~l~~i~~g~~---~~iD~ 227 (451)
+|||||+++|+.++.+.+ ...+|++++|+|--|--..+.-. .-|. .|..+.+-+.+..+++++. .++|+
T Consensus 123 aGGDGT~~eVVTGi~Rrr----~~~~pv~~~P~G~~~l~~~s~l~-~vfe~~d~V~h~~~a~~avikde~ksv~~fdv 195 (535)
T KOG4435|consen 123 AGGDGTIGEVVTGIFRRR----KAQLPVGFYPGGYDNLWLKSMLP-SVFENSDDVRHACEAAMAVIKDEKKSVYAFDV 195 (535)
T ss_pred ecCCCcHHHhhHHHHhcc----cccCceeeccCccchHhhhhhch-hhhccchHHHHHHHHHHHHhcccccceEEEEe
Confidence 999999999999999864 47899999999988754433211 1111 2333334444445666665 67776
No 24
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.29 E-value=5.9e-06 Score=82.16 Aligned_cols=123 Identities=13% Similarity=0.059 Sum_probs=75.9
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHh-ccchhhhccCCCcEEEEEcCchh
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAE-LGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~-~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
+++.+|.|+.. ....++.+++.+.|.... +++.... . .+...+++...+. .. ...+.+.||++|||||
T Consensus 1 m~v~iv~~~~k--~~~~~~~~~I~~~L~~~g-~~v~v~~-~--~~~~~~~~~~~~~~~~-----~~~~~d~vi~iGGDGT 69 (277)
T PRK03708 1 MRFGIVARRDK--EEALKLAYRVYDFLKVSG-YEVVVDS-E--TYEHLPEFSEEDVLPL-----EEMDVDFIIAIGGDGT 69 (277)
T ss_pred CEEEEEecCCC--HHHHHHHHHHHHHHHHCC-CEEEEec-c--hhhhcCcccccccccc-----cccCCCEEEEEeCcHH
Confidence 36788888744 456778889998887643 4444321 0 0011111111110 10 0135689999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEE
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v 232 (451)
+.++++ +.. ..+||..||+||. +|...+.. . .+...++++.+|....-.+..+.+
T Consensus 70 lL~a~~-~~~-------~~~pi~gIn~G~l-GFl~~~~~-----~----~~~~~l~~i~~g~~~~~~r~~l~~ 124 (277)
T PRK03708 70 ILRIEH-KTK-------KDIPILGINMGTL-GFLTEVEP-----E----ETFFALSRLLEGDYFIDERIKLRV 124 (277)
T ss_pred HHHHHH-hcC-------CCCeEEEEeCCCC-CccccCCH-----H----HHHHHHHHHHcCCceEEEeEEEEE
Confidence 999999 653 4789999999998 78776642 2 355666777788765444444443
No 25
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.23 E-value=9e-06 Score=81.96 Aligned_cols=125 Identities=12% Similarity=0.049 Sum_probs=76.7
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
.+++++|+|| |..+..+...++.+.|... .+++....... .. .....+.+. .....+.||++|||||
T Consensus 3 ~kkv~lI~n~--~~~~~~~~~~~i~~~L~~~-g~~v~v~~~~~---~~-~~~~~~~~~------~~~~~d~vi~~GGDGT 69 (305)
T PRK02645 3 LKQVIIAYKA--GSSQAKEAAERCAKQLEAR-GCKVLMGPSGP---KD-NPYPVFLAS------ASELIDLAIVLGGDGT 69 (305)
T ss_pred cCEEEEEEeC--CCHHHHHHHHHHHHHHHHC-CCEEEEecCch---hh-ccccchhhc------cccCcCEEEEECCcHH
Confidence 5689999999 4445566778888877653 45654422111 00 001111110 1235689999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecC-CCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEEe
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPL-GTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQ 233 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPl-GTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v~ 233 (451)
+.+++..+.. ..+||..|.+ |+-.=|+.. +.+.. . ..+++++.+|....-.+..+.++
T Consensus 70 ~l~~~~~~~~-------~~~pv~gin~~G~lGFL~~~-------~~~~~-~-~~~l~~i~~g~~~i~~r~~L~~~ 128 (305)
T PRK02645 70 VLAAARHLAP-------HDIPILSVNVGGHLGFLTHP-------RDLLQ-D-ESVWDRLQEDRYAIERRMMLQAR 128 (305)
T ss_pred HHHHHHHhcc-------CCCCEEEEecCCcceEecCc-------hhhcc-h-HHHHHHHHcCCceEEEeeEEEEE
Confidence 9999999964 5689999998 765555531 11111 1 45666777888765566666554
No 26
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=97.80 E-value=0.00015 Score=72.91 Aligned_cols=58 Identities=38% Similarity=0.387 Sum_probs=43.5
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchh-hhcCCCCCCCCcHHHHHHHHHHHHhcC
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS-RSFGWGGSFPFAWKSAVKRTLQRASAG 220 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfA-rsLg~g~~~~~~~~~al~~~l~~i~~g 220 (451)
++.+.|+++|||||...|++++. .+.||--||.||-|-+. ..+. |. +..+++..+.++
T Consensus 99 ~gVdlIvfaGGDGTarDVa~av~--------~~vPvLGipaGvk~~SgvfA~~-----P~----~aa~l~~~~lkg 157 (355)
T COG3199 99 RGVDLIVFAGGDGTARDVAEAVG--------ADVPVLGIPAGVKNYSGVFALS-----PE----DAARLLGAFLKG 157 (355)
T ss_pred cCceEEEEeCCCccHHHHHhhcc--------CCCceEeeccccceeccccccC-----hH----HHHHHHHHHhcc
Confidence 46789999999999999999993 56899999999999764 2221 32 344556666666
No 27
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.59 E-value=0.00078 Score=67.56 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=71.8
Q ss_pred CCCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 79 ~~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
..+++.+|.||..- ...++.+++...|..+. +++....... ...+ .... ...+......+.|.||+.||||
T Consensus 4 ~~~~i~iv~~~~~~--~~~~~~~~i~~~l~~~g-~~v~~~~~~~---~~~~-~~~~--~~~~~~~~~~~~d~vi~lGGDG 74 (292)
T PRK03378 4 HFKCIGIVGHPRHP--TALTTHEMLYHWLTSKG-YEVIVEQQIA---HELQ-LKNV--KTGTLAEIGQQADLAIVVGGDG 74 (292)
T ss_pred cCCEEEEEEeCCCH--HHHHHHHHHHHHHHHCC-CEEEEecchh---hhcC-cccc--cccchhhcCCCCCEEEEECCcH
Confidence 36679999998553 45667888888776543 3443321000 0000 0000 0000000013468999999999
Q ss_pred hHHHHHHHhhhcccCCCCCCCcEEEecCCCCc-chhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEE
Q 013013 159 TVGWVLGSVGELNKQGREPVPPVAIIPLGTGN-DLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (451)
Q Consensus 159 Tv~~Vln~L~~~~~~~~~~~~plgiIPlGTgN-DfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v 232 (451)
|+-.++..+.. .. +.++|.++|| .|...+.. . .+...++++.+|....-.+..+.+
T Consensus 75 T~L~aa~~~~~-------~~--~Pilgin~G~lGFl~~~~~-----~----~~~~~l~~i~~g~~~i~~r~~L~~ 131 (292)
T PRK03378 75 NMLGAARVLAR-------YD--IKVIGINRGNLGFLTDLDP-----D----NALQQLSDVLEGHYISEKRFLLEA 131 (292)
T ss_pred HHHHHHHHhcC-------CC--CeEEEEECCCCCcccccCH-----H----HHHHHHHHHHcCCceEEEEEEEEE
Confidence 99999988864 23 3467777777 66665542 2 245556667778765445544444
No 28
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.53 E-value=0.0011 Score=66.67 Aligned_cols=128 Identities=13% Similarity=0.028 Sum_probs=73.7
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
.+++.||+||... ...+..+++++.|..+ .+++......... ...+....... . ....+.+.||++|||||
T Consensus 4 ~~~v~iv~~~~k~--~a~e~~~~i~~~L~~~-giev~v~~~~~~~--~~~~~~~~~~~-~---~~~~~~d~vi~~GGDGt 74 (295)
T PRK01231 4 FRNIGLIGRLGSS--SVVETLRRLKDFLLDR-GLEVILDEETAEV--LPGHGLQTVSR-K---LLGEVCDLVIVVGGDGS 74 (295)
T ss_pred CCEEEEEecCCCH--HHHHHHHHHHHHHHHC-CCEEEEecchhhh--cCcccccccch-h---hcccCCCEEEEEeCcHH
Confidence 5569999998774 4567788888877654 3454432211000 00000000000 0 00135689999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEEe
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQ 233 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v~ 233 (451)
+..++..+.. ..+||.-|.+|+ +|+-..++ + +.+..+++++.+|....-.+..+.+.
T Consensus 75 ~l~~~~~~~~-------~~~Pvlgin~G~-------lGFl~~~~--~-~~~~~~l~~~~~g~~~i~~r~~L~~~ 131 (295)
T PRK01231 75 LLGAARALAR-------HNVPVLGINRGR-------LGFLTDIR--P-DELEFKLAEVLDGHYQEEERFLLEAE 131 (295)
T ss_pred HHHHHHHhcC-------CCCCEEEEeCCc-------ccccccCC--H-HHHHHHHHHHHcCCceEEEEEEEEEE
Confidence 9999988853 567877788875 33322112 1 23556677777887655555555553
No 29
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=97.30 E-value=0.0012 Score=65.92 Aligned_cols=70 Identities=27% Similarity=0.262 Sum_probs=47.6
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeee
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRL 225 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~i 225 (451)
.+.|.||++|||||+-.++..+.. ..+||--|++||-+=|+. +. +.+..++ ++++.+|....-
T Consensus 75 ~~~D~ii~lGGDGT~L~~~~~~~~-------~~~Pilgin~G~lgfl~~-~~-----~~~~~~~----l~~~~~g~~~~~ 137 (285)
T PF01513_consen 75 EGVDLIIVLGGDGTFLRAARLFGD-------YDIPILGINTGTLGFLTE-FE-----PEDIEEA----LEKILAGEYSIE 137 (285)
T ss_dssp CCSSEEEEEESHHHHHHHHHHCTT-------ST-EEEEEESSSSTSSSS-EE-----GCGHHHH----HHHHHHTHCEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHhcc-------CCCcEEeecCCCcccccc-CC-----HHHHHHH----HHHHhcCCeEEE
Confidence 577899999999999999988864 478999999998654443 32 3444444 444556665555
Q ss_pred eeeEEEE
Q 013013 226 DSWHAVI 232 (451)
Q Consensus 226 D~w~i~v 232 (451)
.+..+++
T Consensus 138 ~r~~l~~ 144 (285)
T PF01513_consen 138 ERMRLEV 144 (285)
T ss_dssp EEEEEEE
T ss_pred EeeeEEE
Confidence 5554444
No 30
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.04 E-value=0.011 Score=59.18 Aligned_cols=125 Identities=14% Similarity=0.056 Sum_probs=73.0
Q ss_pred CCCCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 013013 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (451)
Q Consensus 78 ~~~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (451)
..++++.+|.||.. ...++.+++...|..++ +++...... +..+.....+......+.|.||+.|||
T Consensus 8 ~~~~~i~ii~~~~~---~~~~~~~~i~~~l~~~g-~~~~~~~~~---------~~~~~~~~~~~~~~~~~~Dlvi~iGGD 74 (287)
T PRK14077 8 KNIKKIGLVTRPNV---SLDKEILKLQKILSIYK-VEILLEKES---------AEILDLPGYGLDELFKISDFLISLGGD 74 (287)
T ss_pred ccCCEEEEEeCCcH---HHHHHHHHHHHHHHHCC-CEEEEecch---------hhhhcccccchhhcccCCCEEEEECCC
Confidence 44778999999963 56678888888886543 344332100 011100000000001356899999999
Q ss_pred hhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEE
Q 013013 158 GTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (451)
Q Consensus 158 GTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v 232 (451)
||+=.++..+.. ..+||--|.+|+ ||+=..++. +.++..++++.+|....-.+..+++
T Consensus 75 GT~L~aa~~~~~-------~~~PilGIN~G~-------lGFLt~~~~---~~~~~~l~~i~~g~y~ie~r~~L~~ 132 (287)
T PRK14077 75 GTLISLCRKAAE-------YDKFVLGIHAGH-------LGFLTDITV---DEAEKFFQAFFQGEFEIEKPYMLSV 132 (287)
T ss_pred HHHHHHHHHhcC-------CCCcEEEEeCCC-------cccCCcCCH---HHHHHHHHHHHcCCCeEEEEEEEEE
Confidence 999988887754 456766677776 444332221 2356677777788755444444444
No 31
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.00 E-value=0.011 Score=59.72 Aligned_cols=127 Identities=13% Similarity=0.132 Sum_probs=74.2
Q ss_pred CCCCCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHh---cc---------chhhhc
Q 013013 77 QPPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAE---LG---------DFCAKD 144 (451)
Q Consensus 77 ~~~~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~---~~---------~~~~~~ 144 (451)
+.+++++.+|.||.. ....++.+++...|..+. +++...... +..+.. .. ......
T Consensus 2 ~~~~~~I~iv~~~~~--~~~~~~~~~l~~~L~~~g-~~v~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (306)
T PRK03372 2 MTASRRVLLVAHTGR--DEATEAARRVAKQLGDAG-IGVRVLDAE---------AVDLGATHPAPDDFRAMEVVDADPDA 69 (306)
T ss_pred CCCccEEEEEecCCC--HHHHHHHHHHHHHHHHCC-CEEEEeech---------hhhhcccccccccccccccccchhhc
Confidence 456788999999754 345667788888776543 344332110 000000 00 000000
Q ss_pred cCCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeee
Q 013013 145 TRQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICR 224 (451)
Q Consensus 145 ~~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~ 224 (451)
..+.|.||+.|||||+-.++..+.. ..+||--|.+|+=.=|+. ++ + +.+..+++++.+|...-
T Consensus 70 ~~~~D~vi~lGGDGT~L~aar~~~~-------~~~PilGIN~G~lGFL~~-------~~--~-~~~~~~l~~i~~g~y~i 132 (306)
T PRK03372 70 ADGCELVLVLGGDGTILRAAELARA-------ADVPVLGVNLGHVGFLAE-------AE--A-EDLDEAVERVVDRDYRV 132 (306)
T ss_pred ccCCCEEEEEcCCHHHHHHHHHhcc-------CCCcEEEEecCCCceecc-------CC--H-HHHHHHHHHHHcCCceE
Confidence 1346899999999999999888764 457888899987433332 11 1 23556677777888665
Q ss_pred eeeeEEEE
Q 013013 225 LDSWHAVI 232 (451)
Q Consensus 225 iD~w~i~v 232 (451)
-.+..+.+
T Consensus 133 ~~R~~L~~ 140 (306)
T PRK03372 133 EERMTLDV 140 (306)
T ss_pred EEeeeEEE
Confidence 55444443
No 32
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.67 E-value=0.027 Score=56.69 Aligned_cols=129 Identities=14% Similarity=0.116 Sum_probs=73.4
Q ss_pred CCCCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccc----hhc-cchhHHHHHHhccchhhhccCCCcEEE
Q 013013 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHE----FVQ-YGLACLEKLAELGDFCAKDTRQKMRIV 152 (451)
Q Consensus 78 ~~~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~----~~t-~~~~~a~~la~~~~~~~~~~~~~~~Iv 152 (451)
++.+++.+|.||..- ...++..++...|..+. +++....... ... ...++. .. ...+. ....|.||
T Consensus 3 ~~~~~i~ii~~~~~~--~~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~---~~~~D~vi 73 (296)
T PRK04539 3 SPFHNIGIVTRPNTP--DIQDTAHTLITFLKQHG-FTVYLDEVGIKEGCIYTQDTVGCH--IV-NKTEL---GQYCDLVA 73 (296)
T ss_pred CCCCEEEEEecCCCH--HHHHHHHHHHHHHHHCC-CEEEEecccccccchhcccccccc--cc-chhhc---CcCCCEEE
Confidence 346789999998653 45667888888776543 3333211000 000 000000 00 00000 12468999
Q ss_pred EEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEE
Q 013013 153 VAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (451)
Q Consensus 153 v~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v 232 (451)
+.|||||+=.++..+.. ..+||--|-+|+ ||+=..++. +.+...++++.+|....-.+..+.+
T Consensus 74 ~lGGDGT~L~aa~~~~~-------~~~PilGIN~G~-------lGFL~~~~~---~~~~~~l~~i~~g~~~~~~r~~l~~ 136 (296)
T PRK04539 74 VLGGDGTFLSVAREIAP-------RAVPIIGINQGH-------LGFLTQIPR---EYMTDKLLPVLEGKYLAEERILIEA 136 (296)
T ss_pred EECCcHHHHHHHHHhcc-------cCCCEEEEecCC-------CeEeeccCH---HHHHHHHHHHHcCCceEEEeeeEEE
Confidence 99999999999888754 456777788886 554333232 2355667777788765555555544
No 33
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=96.66 E-value=0.033 Score=55.95 Aligned_cols=128 Identities=16% Similarity=0.084 Sum_probs=72.7
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
.+.+++|.|+..- ...+..+.+.+.|... .+++....... ...+ ...+-. .. ........+.||++|||||
T Consensus 5 ~~~v~iv~~~~~~--~~~e~~~~i~~~L~~~-g~~v~v~~~~~---~~~~-~~~~~~-~~-~~~~~~~~d~vi~~GGDGt 75 (291)
T PRK02155 5 FKTVALIGRYQTP--GIAEPLESLAAFLAKR-GFEVVFEADTA---RNIG-LTGYPA-LT-PEEIGARADLAVVLGGDGT 75 (291)
T ss_pred CCEEEEEecCCCH--HHHHHHHHHHHHHHHC-CCEEEEecchh---hhcC-cccccc-cC-hhHhccCCCEEEEECCcHH
Confidence 4568899888653 4556778888877654 34433321100 0000 000000 00 0000134689999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEEe
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQ 233 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v~ 233 (451)
+..++..+.. ..+|+--|.+|+-.=|+. ++ + +.+...++++.+|....-.++.+.++
T Consensus 76 ~l~~~~~~~~-------~~~pilGIn~G~lGFL~~-------~~--~-~~~~~~l~~~~~g~~~i~~r~~L~~~ 132 (291)
T PRK02155 76 MLGIGRQLAP-------YGVPLIGINHGRLGFITD-------IP--L-DDMQETLPPMLAGNYEEEERMLLEAR 132 (291)
T ss_pred HHHHHHHhcC-------CCCCEEEEcCCCcccccc-------CC--H-HHHHHHHHHHHcCCceEEEeEEEEEE
Confidence 9999998864 456777788876533321 12 1 23566677777888765566655543
No 34
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.64 E-value=0.032 Score=56.07 Aligned_cols=124 Identities=14% Similarity=0.139 Sum_probs=71.4
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHH---------hccchhhhccCCCcEE
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLA---------ELGDFCAKDTRQKMRI 151 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la---------~~~~~~~~~~~~~~~I 151 (451)
+++.+|.||.. ....++.+++...|..+. +++...... +..+. ....+......+.|.|
T Consensus 1 m~igii~~~~~--~~~~~~~~~i~~~l~~~g-~~v~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~dlv 68 (292)
T PRK01911 1 MKIAIFGQTYQ--ESASPYIQELFDELEERG-AEVLIEEKF---------LDFLKQDLKFHPSYDTFSDNEELDGSADMV 68 (292)
T ss_pred CEEEEEeCCCC--HHHHHHHHHHHHHHHHCC-CEEEEecch---------hhhhccccccccccccccchhhcccCCCEE
Confidence 35788888754 345567788888776543 343321100 01000 0000000001346899
Q ss_pred EEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEE
Q 013013 152 VVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAV 231 (451)
Q Consensus 152 vv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~ 231 (451)
|+.|||||+=.++..+.. ..+||--|.+|+ ||+=..++ + +.+++.++++.+|....-.+..++
T Consensus 69 i~lGGDGT~L~aa~~~~~-------~~~PilGIN~G~-------lGFLt~~~--~-~~~~~~l~~i~~g~~~i~~r~~L~ 131 (292)
T PRK01911 69 ISIGGDGTFLRTATYVGN-------SNIPILGINTGR-------LGFLATVS--K-EEIEETIDELLNGDYTIEERSLLQ 131 (292)
T ss_pred EEECCcHHHHHHHHHhcC-------CCCCEEEEecCC-------CCcccccC--H-HHHHHHHHHHHcCCceEEEEeeEE
Confidence 999999999998887754 457777788887 45433222 2 235667777888886655555555
Q ss_pred Ee
Q 013013 232 IQ 233 (451)
Q Consensus 232 v~ 233 (451)
++
T Consensus 132 ~~ 133 (292)
T PRK01911 132 LE 133 (292)
T ss_pred EE
Confidence 53
No 35
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.62 E-value=0.035 Score=56.06 Aligned_cols=130 Identities=13% Similarity=0.075 Sum_probs=70.7
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecc-cchhccchhH-----HHHHHhccchhhhccCCCcEEEEE
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKP-HEFVQYGLAC-----LEKLAELGDFCAKDTRQKMRIVVA 154 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p-~~~~t~~~~~-----a~~la~~~~~~~~~~~~~~~Ivv~ 154 (451)
+++.+|.|+.. ....++..++.+.|..+. +++..... ...+ ..... ...+.. .. ......+.|.+|+.
T Consensus 2 ~~igiv~n~~~--~~~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~-~~~~~~~~Dlvi~i 75 (305)
T PRK02649 2 PKAGIIYNDGK--PLAVRTAEELQDKLEAAG-WEVVRASSSGGIL-GYANPDQPVCHTGIDQ-LV-PPGFDSSMKFAIVL 75 (305)
T ss_pred CEEEEEEcCCC--HHHHHHHHHHHHHHHHCC-CEEEEecchhhhc-Cccccccccccccccc-cC-hhhcccCcCEEEEE
Confidence 56889999844 345667888888776543 34432111 0000 00000 000000 00 00001246899999
Q ss_pred cCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEEe
Q 013013 155 GGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQ 233 (451)
Q Consensus 155 GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v~ 233 (451)
|||||+-.++..+.. ..+||--|.+|+ ||+=..++ + +.+...++++.+|....-.+..+.++
T Consensus 76 GGDGTlL~aar~~~~-------~~iPilGIN~G~-------lGFLt~~~--~-~~~~~~l~~l~~g~y~ie~r~~L~~~ 137 (305)
T PRK02649 76 GGDGTVLSAARQLAP-------CGIPLLTINTGH-------LGFLTEAY--L-NQLDEAIDQVLAGQYTIEERTMLTVS 137 (305)
T ss_pred eCcHHHHHHHHHhcC-------CCCcEEEEeCCC-------CcccccCC--H-HHHHHHHHHHHcCCcEEEEeeeEEEE
Confidence 999999999887754 456776677775 44322222 1 24566777788887655455555443
No 36
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.47 E-value=0.034 Score=55.01 Aligned_cols=105 Identities=17% Similarity=0.150 Sum_probs=64.9
Q ss_pred eEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhHH
Q 013013 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVG 161 (451)
Q Consensus 82 ~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv~ 161 (451)
.+.+|.|+.. ...++.++++.+|.... +..... ..+.|.|++.|||||+=
T Consensus 4 ~i~iv~~~~~---~a~~~~~~l~~~l~~~g-~~~~~~--------------------------~~~~D~vi~lGGDGT~L 53 (264)
T PRK03501 4 NLFFFYKRDK---ELVEKVKPLKKIAEEYG-FTVVDH--------------------------PKNANIIVSIGGDGTFL 53 (264)
T ss_pred EEEEEECCCH---HHHHHHHHHHHHHHHCC-CEEEcC--------------------------CCCccEEEEECCcHHHH
Confidence 5778888766 45567888888886543 332210 12346899999999998
Q ss_pred HHHHHhhhcccCCCCCCCcEEEecC-CCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEE
Q 013013 162 WVLGSVGELNKQGREPVPPVAIIPL-GTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (451)
Q Consensus 162 ~Vln~L~~~~~~~~~~~~plgiIPl-GTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v 232 (451)
.++..+... ..+|+--|.+ | .||+=..++. +.+.+.++++.+|....-.+..+++
T Consensus 54 ~a~~~~~~~------~~~pilgIn~~G-------~lGFL~~~~~---~~~~~~l~~i~~g~~~~~~r~~l~~ 109 (264)
T PRK03501 54 QAVRKTGFR------EDCLYAGISTKD-------QLGFYCDFHI---DDLDKMIQAITKEEIEVRKYPTIEV 109 (264)
T ss_pred HHHHHhccc------CCCeEEeEecCC-------CCeEcccCCH---HHHHHHHHHHHcCCcEEEEeeeEEE
Confidence 888776431 2467555666 6 3444322222 2466677778888765444544444
No 37
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=96.29 E-value=0.07 Score=57.02 Aligned_cols=134 Identities=16% Similarity=0.202 Sum_probs=70.0
Q ss_pred CCCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecc-cchh-cc--chhHHHHHHhccchhhhccCCCcEEEEE
Q 013013 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKP-HEFV-QY--GLACLEKLAELGDFCAKDTRQKMRIVVA 154 (451)
Q Consensus 79 ~~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p-~~~~-t~--~~~~a~~la~~~~~~~~~~~~~~~Ivv~ 154 (451)
+++.++||.||..- ...++..++...|.....+.+.+... ...+ .. ..+.. ..-....+........|.||+.
T Consensus 193 ~p~~VgIV~n~~k~--~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~DlVIsi 269 (508)
T PLN02935 193 DPQTVLIITKPNST--SVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFV-QTWEDEKEILLLHTKVDLVITL 269 (508)
T ss_pred CCCEEEEEecCCCH--HHHHHHHHHHHHHHhcCCCEEEEechhhhhhcccccccccc-ccccccchhhhcccCCCEEEEE
Confidence 57889999998663 44567778887776322333332110 0000 00 00000 0000000000001346899999
Q ss_pred cCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEE
Q 013013 155 GGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (451)
Q Consensus 155 GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v 232 (451)
|||||+=+++..+.. ..+||--|.+|+ ||+=..++ + +.+...|+++.+|....-.+..+.+
T Consensus 270 GGDGTlL~Aar~~~~-------~~iPILGIN~G~-------LGFLt~i~--~-~e~~~~Le~il~G~y~Ie~R~~L~~ 330 (508)
T PLN02935 270 GGDGTVLWAASMFKG-------PVPPVVPFSMGS-------LGFMTPFH--S-EQYRDCLDAILKGPISITLRHRLQC 330 (508)
T ss_pred CCcHHHHHHHHHhcc-------CCCcEEEEeCCC-------cceecccC--H-HHHHHHHHHHHcCCceEEEEeEEEE
Confidence 999999999888754 456766677765 33322112 1 2356677777788765444444443
No 38
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.73 E-value=0.13 Score=56.34 Aligned_cols=126 Identities=15% Similarity=0.126 Sum_probs=71.8
Q ss_pred CCCCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccch---hhhccCCCcEEEEE
Q 013013 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDF---CAKDTRQKMRIVVA 154 (451)
Q Consensus 78 ~~~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~---~~~~~~~~~~Ivv~ 154 (451)
.+++++.||.||.. ....++..++...|.... .++.... .. +..+.....+ ......+.|.||+.
T Consensus 288 ~~~~~i~iv~~~~~--~~~~~~~~~i~~~l~~~~-~~v~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~dlvi~l 355 (569)
T PRK14076 288 IKPTKFGIVSRIDN--EEAINLALKIIKYLDSKG-IPYELES-FL--------YNKLKNRLNEECNLIDDIEEISHIISI 355 (569)
T ss_pred cCCcEEEEEcCCCC--HHHHHHHHHHHHHHHHCC-CEEEEec-hh--------hhhhcccccccccccccccCCCEEEEE
Confidence 45667889988754 345667788888776543 3333211 00 1111100000 00012346899999
Q ss_pred cCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEE
Q 013013 155 GGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (451)
Q Consensus 155 GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v 232 (451)
|||||+=.++..+.. ..+||--|.+|+ ||+=..+. + +.+...|+++.+|....-.+-.+.+
T Consensus 356 GGDGT~L~aa~~~~~-------~~~PilGin~G~-------lGFL~~~~--~-~~~~~~l~~~~~g~~~i~~r~~L~~ 416 (569)
T PRK14076 356 GGDGTVLRASKLVNG-------EEIPIICINMGT-------VGFLTEFS--K-EEIFKAIDSIISGEYEIEKRTKLSG 416 (569)
T ss_pred CCcHHHHHHHHHhcC-------CCCCEEEEcCCC-------CCcCcccC--H-HHHHHHHHHHHcCCceEEEeEEEEE
Confidence 999999999887754 467877789988 44322222 1 2356677778888765444444443
No 39
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.42 E-value=0.54 Score=46.34 Aligned_cols=68 Identities=25% Similarity=0.335 Sum_probs=45.6
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeee
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRL 225 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~i 225 (451)
.+.|.||+.|||||+=.++..+ .+||--|.+|+ +|.=..++ + +.+..+++++.+|.....
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~----------~~Pilgin~G~-------lGfl~~~~--~-~~~~~~l~~~~~g~~~~~ 99 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKV----------GTPLVGFKAGR-------LGFLSSYT--L-EEIDRFLEDLKNWNFREE 99 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHc----------CCCEEEEeCCC-------CccccccC--H-HHHHHHHHHHHcCCcEEE
Confidence 3557999999999998777654 25665667676 44432222 2 346677788888887766
Q ss_pred eeeEEEEe
Q 013013 226 DSWHAVIQ 233 (451)
Q Consensus 226 D~w~i~v~ 233 (451)
.+..++++
T Consensus 100 ~r~~l~~~ 107 (256)
T PRK14075 100 KRWFLKIE 107 (256)
T ss_pred EeeEEEEE
Confidence 66666664
No 40
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.15 E-value=0.26 Score=48.66 Aligned_cols=35 Identities=23% Similarity=0.113 Sum_probs=28.3
Q ss_pred CCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCC
Q 013013 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGT 188 (451)
Q Consensus 147 ~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGT 188 (451)
..|.|++.|||||+=.++..+.. ..+||--|.+|+
T Consensus 33 ~~D~vi~iGGDGT~L~a~~~~~~-------~~iPilGIN~G~ 67 (259)
T PRK00561 33 GADYLFVLGGDGFFVSTAANYNC-------AGCKVVGINTGH 67 (259)
T ss_pred CCCEEEEECCcHHHHHHHHHhcC-------CCCcEEEEecCC
Confidence 45799999999999998877753 567877788885
No 41
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.09 E-value=0.26 Score=48.85 Aligned_cols=104 Identities=12% Similarity=0.072 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhHH
Q 013013 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVG 161 (451)
Q Consensus 82 ~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv~ 161 (451)
++.+|.|+ ..+..++.+++++.|... .+++. ..+.|.||+.|||||+=
T Consensus 2 ~i~Ii~~~---~~~~~~~~~~l~~~l~~~-g~~~~----------------------------~~~~Dlvi~iGGDGT~L 49 (265)
T PRK04885 2 KVAIISNG---DPKSKRVASKLKKYLKDF-GFILD----------------------------EKNPDIVISVGGDGTLL 49 (265)
T ss_pred EEEEEeCC---CHHHHHHHHHHHHHHHHc-CCccC----------------------------CcCCCEEEEECCcHHHH
Confidence 46777773 334566788888877653 22210 12457899999999999
Q ss_pred HHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEE
Q 013013 162 WVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (451)
Q Consensus 162 ~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v 232 (451)
..+..+... ..++|+--|.+|+-.=|+. ++ + +.++.+++++.+|......+-.+++
T Consensus 50 ~a~~~~~~~-----~~~iPilGIN~G~lGFL~~-------~~--~-~~~~~~l~~i~~g~y~i~~r~~L~~ 105 (265)
T PRK04885 50 SAFHRYENQ-----LDKVRFVGVHTGHLGFYTD-------WR--P-FEVDKLVIALAKDPGQVVSYPLLEV 105 (265)
T ss_pred HHHHHhccc-----CCCCeEEEEeCCCceeccc-------CC--H-HHHHHHHHHHHcCCceEEEEeeEEE
Confidence 988877541 1356777788876333331 11 1 2355667777788765444433333
No 42
>PLN02727 NAD kinase
Probab=94.76 E-value=0.25 Score=56.23 Aligned_cols=116 Identities=15% Similarity=0.188 Sum_probs=66.5
Q ss_pred CCCCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHh--cc--------chhhhccCC
Q 013013 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAE--LG--------DFCAKDTRQ 147 (451)
Q Consensus 78 ~~~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~--~~--------~~~~~~~~~ 147 (451)
.+++.++||.++.. .......++...|..+..+++.+. +. .+..+.. .. .+.......
T Consensus 676 ~p~rtVgIV~K~~~---ea~~~~~eL~~~L~~~~gi~V~VE-~~--------~a~~l~~~~~~~~~~~~~~~~~~el~~~ 743 (986)
T PLN02727 676 STPKTVLLLKKLGQ---ELMEEAKEVASFLYHQEKMNVLVE-PD--------VHDIFARIPGFGFVQTFYSQDTSDLHER 743 (986)
T ss_pred CCCCEEEEEcCCcH---HHHHHHHHHHHHHHhCCCeEEEEe-cc--------hHHHhhccccccccceecccchhhcccC
Confidence 46888999999976 344566777777765423444321 11 0111100 00 000000124
Q ss_pred CcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCe
Q 013013 148 KMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPI 222 (451)
Q Consensus 148 ~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~ 222 (451)
.|.||+.|||||+=.++..+.. ..+||--|.+|+ ||+=..++ + +.+...|.++.+|..
T Consensus 744 ~DLVIvLGGDGTlLrAar~~~~-------~~iPILGINlGr-------LGFLTdi~--~-ee~~~~L~~Il~G~y 801 (986)
T PLN02727 744 VDFVACLGGDGVILHASNLFRG-------AVPPVVSFNLGS-------LGFLTSHY--F-EDFRQDLRQVIHGNN 801 (986)
T ss_pred CCEEEEECCcHHHHHHHHHhcC-------CCCCEEEEeCCC-------ccccccCC--H-HHHHHHHHHHHcCCc
Confidence 6899999999999999888754 457877788884 55433222 2 224555666666663
No 43
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.21 E-value=0.7 Score=45.97 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=62.5
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhH
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv 160 (451)
+++.+++||.. ....++..++...|. . .+++..... .+..+.....+. .. .+.|.||+.|||||+
T Consensus 1 m~i~iv~~~~~--~~~~~~~~~i~~~l~-~-g~~~~~~~~---------~~~~~~~~~~~~-~~-~~~D~vi~lGGDGT~ 65 (271)
T PRK01185 1 MKVAFVIRKDC--KRCIKIAKSIIELLP-P-DWEIIYEME---------AAKALGMDGLDI-EE-INADVIITIGGDGTI 65 (271)
T ss_pred CEEEEEecCCC--HHHHHHHHHHHHHHh-c-CCEEEEech---------hhhhcCcccCcc-cc-cCCCEEEEEcCcHHH
Confidence 35788889754 345567778887773 3 334332110 011110000000 01 256899999999998
Q ss_pred HHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEE
Q 013013 161 GWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (451)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v 232 (451)
=.++..+ . +||--|.+|+= |+=..++. +.+...|+++.+|....-.+..+.+
T Consensus 66 L~a~~~~---------~-~PilGIN~G~l-------GFL~~~~~---~~~~~~l~~i~~g~~~i~~r~~L~~ 117 (271)
T PRK01185 66 LRTLQRA---------K-GPILGINMGGL-------GFLTEIEI---DEVGSAIKKLIRGEYFIDERMKLKV 117 (271)
T ss_pred HHHHHHc---------C-CCEEEEECCCC-------ccCcccCH---HHHHHHHHHHHcCCcEEEEeeEEEE
Confidence 6665433 1 35555677754 33222221 2456667777788765555555554
No 44
>PLN02929 NADH kinase
Probab=93.47 E-value=0.38 Score=48.48 Aligned_cols=76 Identities=18% Similarity=0.150 Sum_probs=50.7
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCC---------cch--hhhcCCCCCCCCcHHHHHHHHH
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTG---------NDL--SRSFGWGGSFPFAWKSAVKRTL 214 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTg---------NDf--ArsLg~g~~~~~~~~~al~~~l 214 (451)
.+.|.||++|||||+=.++..+ + ..+||--|-.|+. |.| .|++|.=..+. + +.+.+.|
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~-~-------~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~--~-~~~~~~L 131 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFL-D-------DSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAAT--A-EDFEQVL 131 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHc-C-------CCCcEEEEECCCcccccccccccccccccCccccccCC--H-HHHHHHH
Confidence 5678999999999999988777 4 3466666777742 233 35777644322 2 3467778
Q ss_pred HHHhcCCeeeeeeeEEEE
Q 013013 215 QRASAGPICRLDSWHAVI 232 (451)
Q Consensus 215 ~~i~~g~~~~iD~w~i~v 232 (451)
+++.+|....-.+..+.+
T Consensus 132 ~~il~g~~~~~~r~~L~~ 149 (301)
T PLN02929 132 DDVLFGRLKPTELSRIST 149 (301)
T ss_pred HHHHcCCceEEEeeeEEE
Confidence 888888766555555544
No 45
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.21 E-value=0.44 Score=47.43 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=41.7
Q ss_pred CCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhc-CCeeee
Q 013013 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASA-GPICRL 225 (451)
Q Consensus 147 ~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~-g~~~~i 225 (451)
+.|.||+.|||||+-.++..+.. ..+||--|.+|+ ||+=..+. +.+ +...+.++.+ |...--
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~~-------~~~PilgIn~G~-------lGFL~~~~--~~~-~~~~l~~~~~~g~~~i~ 104 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLAK-------YDIPLIGINRGN-------LGFLTDID--PKN-AYEQLEACLERGEFFVE 104 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhcc-------CCCcEEEEeCCC-------CcccccCC--HHH-HHHHHHHHHhcCCceEE
Confidence 46899999999999998887754 356766678887 55433222 222 3334444555 655433
Q ss_pred eeeEEEE
Q 013013 226 DSWHAVI 232 (451)
Q Consensus 226 D~w~i~v 232 (451)
.+..+.+
T Consensus 105 ~r~~L~~ 111 (272)
T PRK02231 105 ERFLLEA 111 (272)
T ss_pred EeeeEEE
Confidence 4444443
No 46
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=92.55 E-value=0.23 Score=48.66 Aligned_cols=37 Identities=27% Similarity=0.238 Sum_probs=29.4
Q ss_pred cCCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCC
Q 013013 145 TRQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGT 188 (451)
Q Consensus 145 ~~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGT 188 (451)
..+.|.||+.|||||+-.++..+.. ..+||--|.+|+
T Consensus 23 ~~~~Dlvi~iGGDGTlL~a~~~~~~-------~~~PvlGIN~G~ 59 (246)
T PRK04761 23 IEEADVIVALGGDGFMLQTLHRYMN-------SGKPVYGMNRGS 59 (246)
T ss_pred cccCCEEEEECCCHHHHHHHHHhcC-------CCCeEEEEeCCC
Confidence 3567899999999999988887654 457777788886
No 47
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=91.32 E-value=3.7 Score=40.94 Aligned_cols=71 Identities=24% Similarity=0.270 Sum_probs=50.4
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeee
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRL 225 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~i 225 (451)
...+.|++.|||||+-.++..+.+ ..+|+--|-+|+ ||+=..++ .+.++++++++.++...-.
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~~-------~~~pilgin~G~-------lGFLt~~~---~~~~~~~~~~~~~~~~~~~ 116 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLAR-------LDIPVLGINLGH-------LGFLTDFE---PDELEKALDALLEGEYRIE 116 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhcc-------CCCCEEEEeCCC-------cccccccC---HHHHHHHHHHHhcCceEEE
Confidence 567899999999999999988875 446777777773 44433333 2357777777888777766
Q ss_pred eeeEEEEe
Q 013013 226 DSWHAVIQ 233 (451)
Q Consensus 226 D~w~i~v~ 233 (451)
.+..++++
T Consensus 117 ~r~~l~~~ 124 (281)
T COG0061 117 ERLLLEVS 124 (281)
T ss_pred EeEEEEEE
Confidence 66666654
No 48
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=86.79 E-value=0.7 Score=46.60 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=49.2
Q ss_pred cCCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEe--cCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCe
Q 013013 145 TRQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAII--PLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPI 222 (451)
Q Consensus 145 ~~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiI--PlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~ 222 (451)
+...|.||-+|||||+-..+.-+.+ ...|-||+= |.|+---++- +.+||.++..++.+ +..|..
T Consensus 103 i~waD~VisvGGDGTfL~Aasrv~~------~~~PViGvNtDP~~Seg~lcL----~~~~~~n~~~al~k----~~sgnF 168 (395)
T KOG4180|consen 103 IRWADMVISVGGDGTFLLAASRVID------DSKPVIGVNTDPTGSEGHLCL----PDKYPSNPAGALCK----LTSGNF 168 (395)
T ss_pred CchhhEEEEecCccceeehhhhhhc------cCCceeeecCCCCcCcceEec----cccCCCCcHHHHHH----HHhccH
Confidence 4677899999999999888775543 244556653 6676655543 66778666666655 456766
Q ss_pred eeeeeeEEEEec
Q 013013 223 CRLDSWHAVIQM 234 (451)
Q Consensus 223 ~~iD~w~i~v~~ 234 (451)
..+-.-+|..++
T Consensus 169 ~wv~r~rir~tv 180 (395)
T KOG4180|consen 169 EWVLRQRIRGTV 180 (395)
T ss_pred HHhhhheeEEEE
Confidence 555444444443
No 49
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=85.77 E-value=2.4 Score=42.89 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=53.7
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhccc-CeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKE-QVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~-~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
.++++||..+..-. ...+++...|... .+..+....|.. .....+++++.+. ..+.|.||++|| |
T Consensus 23 ~~~~liv~~~~~~~----~~~~~v~~~l~~~~~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~IIaiGG-G 88 (332)
T cd07766 23 FDRALVVSDEGVVK----GVGEKVADSLKKLIAVHIFDGVGPNP----TFEEVKEAVERAR-----AAEVDAVIAVGG-G 88 (332)
T ss_pred CCeEEEEeCCchhh----hHHHHHHHHHHhcCcEEEeCCcCCCc----CHHHHHHHHHHHH-----hcCcCEEEEeCC-c
Confidence 36788888765543 3556666666542 111111222211 2234555555432 145688888887 8
Q ss_pred hHHHHHHHhhhcccCCCCCCCcEEEecC--CCC
Q 013013 159 TVGWVLGSVGELNKQGREPVPPVAIIPL--GTG 189 (451)
Q Consensus 159 Tv~~Vln~L~~~~~~~~~~~~plgiIPl--GTg 189 (451)
++..+...+.... ...+|+..||. |||
T Consensus 89 s~~D~aK~ia~~~----~~~~p~i~iPTt~~tg 117 (332)
T cd07766 89 STLDTAKAVAALL----NRGLPIIIVPTTAATG 117 (332)
T ss_pred hHHHHHHHHHHHh----cCCCCEEEEeCCCchh
Confidence 9998887775532 23689999998 665
No 50
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=81.86 E-value=6.3 Score=40.98 Aligned_cols=105 Identities=18% Similarity=0.287 Sum_probs=57.7
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEE-EeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl-~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (451)
.++++|+..+.+-... ..++++...|....+ +.+ ....|.. ......++++.+. ..+.|.||++||
T Consensus 26 ~kr~livtd~~~~~~~--g~~~~v~~~L~~~gi~~~~f~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGG- 93 (383)
T cd08186 26 ISKVLLVTGKSAYKKS--GAWDKVEPALDEHGIEYVLYNKVTPNP----TVDQVDEAAKLGR-----EFGAQAVIAIGG- 93 (383)
T ss_pred CCEEEEEcCccHHhhc--ChHHHHHHHHHHcCCeEEEeCCCCCCC----CHHHHHHHHHHHH-----HcCCCEEEEeCC-
Confidence 3688888877664322 245666666654322 111 1122222 1233444444332 235689999999
Q ss_pred hhHHHHHHHhhhcccC-------------CCCCCCcEEEecC--CCCcchhhhc
Q 013013 158 GTVGWVLGSVGELNKQ-------------GREPVPPVAIIPL--GTGNDLSRSF 196 (451)
Q Consensus 158 GTv~~Vln~L~~~~~~-------------~~~~~~plgiIPl--GTgNDfArsL 196 (451)
|++..+.-.+.-.-.. .....+|+..||. |||-...+.-
T Consensus 94 GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGSE~t~~a 147 (383)
T cd08186 94 GSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLTHGTGTEVDRFA 147 (383)
T ss_pred ccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCChhhhhhCCeE
Confidence 7877776665321100 0123579999998 8887766543
No 51
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=81.15 E-value=9.5 Score=39.04 Aligned_cols=93 Identities=19% Similarity=0.121 Sum_probs=57.9
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhH
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv 160 (451)
++++||..+.. ...+.+.+...|... ...+.... . . ......+++++.+. ..+.|.||++|| |++
T Consensus 24 ~~~liv~d~~~----~~~~~~~l~~~L~~~-~~~~~~~~-~-~--p~~~~v~~~~~~~~-----~~~~D~iIavGG-Gs~ 88 (347)
T cd08172 24 KRPLIVTGPRS----WAAAKPYLPESLAAG-EAFVLRYD-G-E--CSEENIERLAAQAK-----ENGADVIIGIGG-GKV 88 (347)
T ss_pred CeEEEEECHHH----HHHHHHHHHHHHhcC-eEEEEEeC-C-C--CCHHHHHHHHHHHH-----hcCCCEEEEeCC-cHH
Confidence 68889988776 234667777777432 22222211 0 0 12244555554432 235688999998 899
Q ss_pred HHHHHHhhhcccCCCCCCCcEEEecC--CCCcchhh
Q 013013 161 GWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLSR 194 (451)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~plgiIPl--GTgNDfAr 194 (451)
..+.-.+... ..+|+..||. |||-..++
T Consensus 89 ~D~aK~ia~~------~~~p~i~VPTT~gtgse~t~ 118 (347)
T cd08172 89 LDTAKAVADR------LGVPVITVPTLAATCAAWTP 118 (347)
T ss_pred HHHHHHHHHH------hCCCEEEecCccccCcccce
Confidence 9888888653 3579999997 77766654
No 52
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=80.71 E-value=6.1 Score=40.83 Aligned_cols=99 Identities=23% Similarity=0.236 Sum_probs=53.6
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
++++|+..+... ....+.+.+.|..... +........+ -.......+++++.+.+ ...+..+.||++|| |+
T Consensus 24 ~rvlvVtd~~v~----~~~~~~l~~~L~~~g~~~~~~~~~~~e-~~k~~~~v~~~~~~~~~--~~~dr~~~IIAvGG-Gs 95 (355)
T cd08197 24 DKYLLVTDSNVE----DLYGHRLLEYLREAGAPVELLSVPSGE-EHKTLSTLSDLVERALA--LGATRRSVIVALGG-GV 95 (355)
T ss_pred CeEEEEECccHH----HHHHHHHHHHHHhcCCceEEEEeCCCC-CCCCHHHHHHHHHHHHH--cCCCCCcEEEEECC-cH
Confidence 678888876532 2255667777764321 2222211111 01122334444443321 01223347888887 99
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecC--CCCcc
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPL--GTGND 191 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPl--GTgND 191 (451)
+..+...+.... ...+|+..||. |++.|
T Consensus 96 v~D~ak~~A~~~----~rgip~I~IPTTlla~~d 125 (355)
T cd08197 96 VGNIAGLLAALL----FRGIRLVHIPTTLLAQSD 125 (355)
T ss_pred HHHHHHHHHHHh----ccCCCEEEecCccccccc
Confidence 999887775432 24689999998 66666
No 53
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=79.96 E-value=8.3 Score=39.48 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=55.7
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
++++|+.-+.+. ..+.+++...|....+ +......+.+ .....++.++.+. ..+.|.||++|| |+
T Consensus 23 ~r~livt~~~~~----~~~~~~v~~~L~~~~i~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG-GS 88 (351)
T cd08170 23 KRALIIADEFVL----DLVGAKIEESLAAAGIDARFEVFGGEC----TRAEIERLAEIAR-----DNGADVVIGIGG-GK 88 (351)
T ss_pred CeEEEEECHHHH----HHHHHHHHHHHHhCCCeEEEEEeCCcC----CHHHHHHHHHHHh-----hcCCCEEEEecC-ch
Confidence 677777643332 2466777777765432 2222232322 1133444444332 246789999999 88
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecC--CCCcchhh
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLSR 194 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPl--GTgNDfAr 194 (451)
+..+.-.+.-. ..+|+..||. |||--...
T Consensus 89 ~iD~aK~ia~~------~~~P~iaIPTTagTgse~t~ 119 (351)
T cd08170 89 TLDTAKAVADY------LGAPVVIVPTIASTDAPTSA 119 (351)
T ss_pred hhHHHHHHHHH------cCCCEEEeCCccccCccccc
Confidence 88887777542 3579999997 77765554
No 54
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=78.34 E-value=8.1 Score=40.64 Aligned_cols=51 Identities=25% Similarity=0.356 Sum_probs=38.8
Q ss_pred CCcEEEEEcCchhHHHHHHHhhhcccCCC---CCCCcEEEecCCCCcchhhhcCC
Q 013013 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGR---EPVPPVAIIPLGTGNDLSRSFGW 198 (451)
Q Consensus 147 ~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~---~~~~plgiIPlGTgNDfArsLg~ 198 (451)
....|+|+|||-=++.||-...+.-.... ..-..+-+||+|+ |.+||.||-
T Consensus 75 ~~vKV~v~G~~~y~~~VLr~yVE~Ls~K~~dWl~~~rFlvIPlGs-~~varyLgs 128 (414)
T PF10254_consen 75 PPVKVAVAGGQSYLSAVLRAYVEQLSHKPPDWLNYLRFLVIPLGS-HPVARYLGS 128 (414)
T ss_pred CceEEEEEccHHHHHHHHHHHHHHhccCCcccccceeEEEecCCC-CHHHHHHhc
Confidence 45689999999999999998876422111 1234589999999 999999963
No 55
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=78.22 E-value=8.9 Score=39.00 Aligned_cols=101 Identities=16% Similarity=0.228 Sum_probs=52.4
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhccc-CeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKE-QVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~-~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
++++||..+..... .+.+++...|... .+..+....|.+ .....++.++.+. ..+.|.||++|| |+
T Consensus 23 ~~~lvv~~~~~~~~---g~~~~v~~~l~~~~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~d~IiaiGG-Gs 89 (332)
T cd08180 23 KRVLIVTDPFMVKS---GMLDKVTDHLDSSIEVEIFSDVVPDP----PIEVVAKGIKKFL-----DFKPDIVIALGG-GS 89 (332)
T ss_pred CeEEEEeCchhhhC---ccHHHHHHHHHhcCcEEEeCCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEECC-ch
Confidence 67888887644321 1445555555432 111111222222 1233444444322 245789999999 77
Q ss_pred HHHHHHHhhhcccC-CCCCCCcEEEecC--CCCcchhh
Q 013013 160 VGWVLGSVGELNKQ-GREPVPPVAIIPL--GTGNDLSR 194 (451)
Q Consensus 160 v~~Vln~L~~~~~~-~~~~~~plgiIPl--GTgNDfAr 194 (451)
+..+.-.+.-.... ...+.+|+..||. |||--...
T Consensus 90 ~~D~aKa~a~~~~~~~~~~~~p~i~VPTtagtgse~t~ 127 (332)
T cd08180 90 AIDAAKAIIYFAKKLGKKKKPLFIAIPTTSGTGSEVTS 127 (332)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEeCCCCcchHhhCC
Confidence 77776654221100 0134579999997 77754443
No 56
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=78.13 E-value=16 Score=37.78 Aligned_cols=94 Identities=14% Similarity=0.145 Sum_probs=55.9
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
++++||..+..- ....+++...|..... +.+....+.+ .....+++++.+. ..+.|.||++|| |+
T Consensus 30 ~~~livtd~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~ep----~~~~v~~~~~~~~-----~~~~d~IIavGG-Gs 95 (366)
T PRK09423 30 KRALVIADEFVL----GIVGDRVEASLKEAGLTVVFEVFNGEC----SDNEIDRLVAIAE-----ENGCDVVIGIGG-GK 95 (366)
T ss_pred CEEEEEEChhHH----HHHHHHHHHHHHhCCCeEEEEEeCCCC----CHHHHHHHHHHHH-----hcCCCEEEEecC-hH
Confidence 678888755443 2366777777765432 2122222322 1134445544332 235689999999 88
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecC--CCCcchhh
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLSR 194 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPl--GTgNDfAr 194 (451)
+..+.-.+.-. ..+|+..||. |||-....
T Consensus 96 v~D~aK~iA~~------~~~p~i~IPTtagtgSe~t~ 126 (366)
T PRK09423 96 TLDTAKAVADY------LGVPVVIVPTIASTDAPTSA 126 (366)
T ss_pred HHHHHHHHHHH------cCCCEEEeCCccccCccccC
Confidence 88888777542 3579999998 55554443
No 57
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=78.11 E-value=11 Score=38.73 Aligned_cols=94 Identities=16% Similarity=0.129 Sum_probs=55.6
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
++++|+..+.+-. ...+++...|....+ +++....+.. .....+++++.+. ..+.|.||++|| |+
T Consensus 23 ~~~liv~~~~~~~----~~~~~v~~~l~~~~i~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~IIavGG-Gs 88 (349)
T cd08550 23 SKVAVVGGKTVLK----KSRPRFEAALAKSIIVVDVIVFGGEC----STEEVVKALCGAE-----EQEADVIIGVGG-GK 88 (349)
T ss_pred CeEEEEEChHHHH----HHHHHHHHHHHhcCCeeEEEEcCCCC----CHHHHHHHHHHHH-----hcCCCEEEEecC-cH
Confidence 5677877655533 345677777765432 2232222211 1133444444332 235678999998 89
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecC--CCCcchhh
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLSR 194 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPl--GTgNDfAr 194 (451)
+..+.-.+... ...|+..||. |||-...+
T Consensus 89 ~~D~aK~ia~~------~~~p~i~VPTtagtgse~t~ 119 (349)
T cd08550 89 TLDTAKAVADR------LDKPIVIVPTIASTCAASSN 119 (349)
T ss_pred HHHHHHHHHHH------cCCCEEEeCCccccCccccc
Confidence 88888887642 3579999998 67655444
No 58
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=76.85 E-value=12 Score=38.99 Aligned_cols=107 Identities=19% Similarity=0.311 Sum_probs=62.9
Q ss_pred CCCeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEE-eecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 013013 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLS-EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (451)
Q Consensus 79 ~~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~-~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GG 156 (451)
..++++|+--|.--. ..+.+++.+.|....+ |.+. ...|.+.. ...++-++.+ + ..+.|.||+.||
T Consensus 28 g~~r~liVTd~~~~~---~g~~~~v~~~L~~~~i~~~if~~v~p~P~~----~~v~~~~~~~----~-~~~~D~iIalGG 95 (377)
T COG1454 28 GAKRALIVTDRGLAK---LGLLDKVLDSLDAAGIEYEVFDEVEPEPTI----ETVEAGAEVA----R-EFGPDTIIALGG 95 (377)
T ss_pred CCCceEEEECCcccc---chhHHHHHHHHHhcCCeEEEecCCCCCCCH----HHHHHHHHHH----H-hcCCCEEEEeCC
Confidence 347888888876322 3477888888887652 2222 33444422 2233333322 1 256789999999
Q ss_pred chhHHHHHHHhhhcccCC------------CCCCCcEEEecC--CCCcchhhhcCC
Q 013013 157 DGTVGWVLGSVGELNKQG------------REPVPPVAIIPL--GTGNDLSRSFGW 198 (451)
Q Consensus 157 DGTv~~Vln~L~~~~~~~------------~~~~~plgiIPl--GTgNDfArsLg~ 198 (451)
|++..++-++.-+.... ..+.+|+-.||. |||-...+.--+
T Consensus 96 -GS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTaGTGSEvT~~aVi 150 (377)
T COG1454 96 -GSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTAGTGSEVTPFAVI 150 (377)
T ss_pred -ccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCCCcchhhhcCeEEE
Confidence 77666655543221110 123489999997 999888875544
No 59
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=76.85 E-value=11 Score=38.83 Aligned_cols=99 Identities=16% Similarity=0.131 Sum_probs=55.2
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcc-cCe--eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGK-EQV--FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~-~~~--~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GG 156 (451)
.++++|+..+..-. ...+++...|.. ..+ +.+....+. .....++++.+.+.+. .....+.||++||
T Consensus 23 ~~k~livtd~~v~~----~~~~~v~~~L~~~~~~~~~~~~~~e~~----k~~~~v~~~~~~~~~~--~~~r~d~IIaiGG 92 (344)
T cd08169 23 FDQYFFISDSGVAD----LIAHYIAEYLSKILPVHILVIEGGEEY----KTFETVTRILERAIAL--GANRRTAIVAVGG 92 (344)
T ss_pred CCeEEEEECccHHH----HHHHHHHHHHHhhcCceEEEeCCCCCC----CCHHHHHHHHHHHHHc--CCCCCcEEEEECC
Confidence 36788888765533 355666666643 221 111111111 1223445544433211 1234678888887
Q ss_pred chhHHHHHHHhhhcccCCCCCCCcEEEecC--CCCcchh
Q 013013 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLS 193 (451)
Q Consensus 157 DGTv~~Vln~L~~~~~~~~~~~~plgiIPl--GTgNDfA 193 (451)
|++..+...+.... ...+|+-.||. ++++|-+
T Consensus 93 -Gsv~D~ak~vA~~~----~rgip~i~VPTTlla~~ds~ 126 (344)
T cd08169 93 -GATGDVAGFVASTL----FRGIAFIRVPTTLLAQSDSG 126 (344)
T ss_pred -cHHHHHHHHHHHHh----ccCCcEEEecCCcccccccC
Confidence 89998888775432 24689999998 6666643
No 60
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=76.66 E-value=15 Score=37.92 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=53.7
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
++++|+..+.+. ..+++...|....+ +.+....+.+ .....++.++.+ + ..+.|.||++|| |+
T Consensus 23 ~r~livtd~~~~------~~~~v~~~L~~~g~~~~~~~~~~~p----~~~~v~~~~~~~----~-~~~~D~IIaiGG-GS 86 (374)
T cd08183 23 RRVLLVTGASSL------RAAWLIEALRAAGIEVTHVVVAGEP----SVELVDAAVAEA----R-NAGCDVVIAIGG-GS 86 (374)
T ss_pred CcEEEEECCchH------HHHHHHHHHHHcCCeEEEecCCCCc----CHHHHHHHHHHH----H-hcCCCEEEEecC-ch
Confidence 678888776554 55666666664322 1111122221 113344444432 2 246789999998 77
Q ss_pred HHHHHHHhhhccc-----------C-----CCCCCCcEEEecC--CCCcchhh
Q 013013 160 VGWVLGSVGELNK-----------Q-----GREPVPPVAIIPL--GTGNDLSR 194 (451)
Q Consensus 160 v~~Vln~L~~~~~-----------~-----~~~~~~plgiIPl--GTgNDfAr 194 (451)
+..+.-.+.-... . .....+|+..||. |||--..+
T Consensus 87 ~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGSE~t~ 139 (374)
T cd08183 87 VIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTTAGTGSEVTK 139 (374)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCCCchhHHhCC
Confidence 7776655432100 0 0024579999997 77766555
No 61
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=76.45 E-value=9.3 Score=39.59 Aligned_cols=100 Identities=19% Similarity=0.242 Sum_probs=54.2
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eE-EEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
++++||..+.+-. . ...+++...|....+ +. +....+.. .....++.++.+. ..+.|.||++|| |
T Consensus 24 ~r~livt~~~~~~-~--g~~~~v~~~L~~~gi~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGG-G 90 (375)
T cd08194 24 KRPLIVTDKVMVK-L--GLVDKLTDSLKKEGIESAIFDDVVSEP----TDESVEEGVKLAK-----EGGCDVIIALGG-G 90 (375)
T ss_pred CeEEEEcCcchhh-c--chHHHHHHHHHHCCCeEEEECCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 6788888765542 1 255667777765432 22 11222222 1233444544432 246689999998 7
Q ss_pred hHHHHHHHhhhcc----------cC--CCCCCCcEEEecC--CCCcchh
Q 013013 159 TVGWVLGSVGELN----------KQ--GREPVPPVAIIPL--GTGNDLS 193 (451)
Q Consensus 159 Tv~~Vln~L~~~~----------~~--~~~~~~plgiIPl--GTgNDfA 193 (451)
++..+.-.+.-.- .. .....+|+..||. |||--..
T Consensus 91 S~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagtGsE~t 139 (375)
T cd08194 91 SPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTTAGTGSEVT 139 (375)
T ss_pred hHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCCCccccccC
Confidence 7777665543100 00 0124579999997 6765554
No 62
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=76.03 E-value=9.2 Score=39.36 Aligned_cols=103 Identities=17% Similarity=0.296 Sum_probs=57.0
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEE-EeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl-~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
++++|+.-+.+-...| ..+++...|....+ +.+ ....|.. ......++++.+. ..+.|.||++|| |
T Consensus 26 ~r~lvVt~~~~~~~~g--~~~~v~~~L~~~g~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG-G 93 (357)
T cd08181 26 KRALIVTGKSSAKKNG--SLDDVTKALEELGIEYEIFDEVEENP----SLETIMEAVEIAK-----KFNADFVIGIGG-G 93 (357)
T ss_pred CEEEEEeCCchHhhcC--cHHHHHHHHHHcCCeEEEeCCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 7888888776643322 34556665654321 221 1222222 1133444444332 246689999999 7
Q ss_pred hHHHHHHHhhhcc-----------cCCCCCCCcEEEecC--CCCcchhhh
Q 013013 159 TVGWVLGSVGELN-----------KQGREPVPPVAIIPL--GTGNDLSRS 195 (451)
Q Consensus 159 Tv~~Vln~L~~~~-----------~~~~~~~~plgiIPl--GTgNDfArs 195 (451)
++..+.-.+.-.. .......+|+..||. |||-...+.
T Consensus 94 SviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTGsE~t~~ 143 (357)
T cd08181 94 SPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTGSEVTQY 143 (357)
T ss_pred hHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcchhhhCCe
Confidence 8877776543110 000124689999998 888877763
No 63
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=75.51 E-value=18 Score=37.15 Aligned_cols=103 Identities=21% Similarity=0.238 Sum_probs=55.9
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhcc-CCCcEEEEEcCchh
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDT-RQKMRIVVAGGDGT 159 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~-~~~~~Ivv~GGDGT 159 (451)
++++|+..+.... ....+++...|.....+.+....|.+ .....++.++.+. +. ...|.||++|| |+
T Consensus 24 ~r~lvVtd~~~~~---~g~~~~v~~~L~~~~~~~~~~v~~~p----t~~~v~~~~~~~~----~~~~~~D~IIaiGG-GS 91 (355)
T TIGR03405 24 RRVVVVTFPEARA---LGLARRLEALLGGRLAALIDDVAPNP----DVAQLDGLYARLW----GDEGACDLVIALGG-GS 91 (355)
T ss_pred CeEEEEECcchhh---cchHHHHHHHhccCcEEEeCCCCCCc----CHHHHHHHHHHHH----hcCCCCCEEEEeCC-cc
Confidence 7888888765422 23556677776543222222233332 1233444444322 11 23689999998 77
Q ss_pred HHHHHHHhhhc--cc------------C--CCCCCCcEEEecC--CCCcchhhh
Q 013013 160 VGWVLGSVGEL--NK------------Q--GREPVPPVAIIPL--GTGNDLSRS 195 (451)
Q Consensus 160 v~~Vln~L~~~--~~------------~--~~~~~~plgiIPl--GTgNDfArs 195 (451)
+..+.-.+.-. +. . ...+.+|+..||. |||-...+.
T Consensus 92 viD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTGSE~t~~ 145 (355)
T TIGR03405 92 VIDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAGTGSEVTPW 145 (355)
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCcchhhhcCe
Confidence 77776554221 00 0 0124579999997 888766654
No 64
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=75.21 E-value=7.2 Score=39.89 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=54.8
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCe--eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV--FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~--~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
++++||..+.+- ....+++.+.|....+ ..+....+.. .....+++++.+. ..+.|.||++|| |
T Consensus 23 ~r~liv~d~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~iiavGG-G 88 (345)
T cd08171 23 KKVVVIGGKTAL----AAAKDKIKAALEQSGIEITDFIWYGGES----TYENVERLKKNPA-----VQEADMIFAVGG-G 88 (345)
T ss_pred CEEEEEeCHHHH----HHHHHHHHHHHHHCCCeEEEEEecCCCC----CHHHHHHHHHHHh-----hcCCCEEEEeCC-c
Confidence 678888765443 2346777777765432 1122222322 1133444444321 246789999999 8
Q ss_pred hHHHHHHHhhhcccCCCCCCCcEEEecC--CCCcchh
Q 013013 159 TVGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLS 193 (451)
Q Consensus 159 Tv~~Vln~L~~~~~~~~~~~~plgiIPl--GTgNDfA 193 (451)
++..+.-.+.-. ..+|+..||. |||--..
T Consensus 89 s~~D~aK~ia~~------~~~p~i~VPTt~gtgse~t 119 (345)
T cd08171 89 KAIDTVKVLADK------LGKPVFTFPTIASNCAAVT 119 (345)
T ss_pred HHHHHHHHHHHH------cCCCEEEecCccccCcccc
Confidence 888888777543 3579999997 5554333
No 65
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=74.37 E-value=10 Score=39.11 Aligned_cols=104 Identities=14% Similarity=0.232 Sum_probs=55.8
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eE-EEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (451)
.++++|+..+.+-. ....+.+...|..... +. +....+.. .....+++++.+. ..+.|.||++||
T Consensus 23 ~~~~lvv~~~~~~~---~~~~~~v~~~L~~~~~~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~IiaiGG- 89 (370)
T cd08551 23 GRKALIVTDPGLVK---TGVLDKVIDSLKEAGIEVVIFDGVEPNP----TLSNVDAAVAAYR-----EEGCDGVIAVGG- 89 (370)
T ss_pred CCeEEEEeCcchhh---CccHHHHHHHHHHcCCeEEEECCCCCCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 36788888776654 1245566666654322 21 11122221 1233455554432 245688999998
Q ss_pred hhHHHHHHHhhhcccC------------CCCCCCcEEEecC--CCCcchhhhc
Q 013013 158 GTVGWVLGSVGELNKQ------------GREPVPPVAIIPL--GTGNDLSRSF 196 (451)
Q Consensus 158 GTv~~Vln~L~~~~~~------------~~~~~~plgiIPl--GTgNDfArsL 196 (451)
|++..+.-.+.-.... ...+.+|+..||. |||--..+..
T Consensus 90 Gs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtgse~t~~a 142 (370)
T cd08551 90 GSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTGSEVTPFA 142 (370)
T ss_pred chHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcchhhcCCeE
Confidence 7777766555322100 0123679999998 7775444433
No 66
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=74.32 E-value=14 Score=38.28 Aligned_cols=104 Identities=19% Similarity=0.247 Sum_probs=55.7
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-e-EEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-F-DLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~-dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
++++||.-+.+.... .+.+++.+.|....+ + .+....|.+ .....++.++.+ + ..+.|.||++|| |
T Consensus 29 ~r~livt~~~~~~~~--~~~~~v~~~L~~~g~~~~~~~~v~~~p----~~~~v~~~~~~~----~-~~~~D~IIaiGG-G 96 (382)
T cd08187 29 KKVLLVYGGGSIKKN--GLYDRVIASLKEAGIEVVELGGVEPNP----RLETVREGIELC----K-EEKVDFILAVGG-G 96 (382)
T ss_pred CEEEEEeCCcHHHhc--CcHHHHHHHHHHcCCeEEEECCccCCC----CHHHHHHHHHHH----H-HcCCCEEEEeCC-h
Confidence 688888776655332 245667777764321 1 122222222 112233333322 1 246789999999 7
Q ss_pred hHHHHHHHhhhccc------------CCCCCCCcEEEecC--CCCcchhhhc
Q 013013 159 TVGWVLGSVGELNK------------QGREPVPPVAIIPL--GTGNDLSRSF 196 (451)
Q Consensus 159 Tv~~Vln~L~~~~~------------~~~~~~~plgiIPl--GTgNDfArsL 196 (451)
++..+.-.+.-... ......+|+-.||. |||-...+.-
T Consensus 97 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGsE~t~~a 148 (382)
T cd08187 97 SVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATGSEMNGGA 148 (382)
T ss_pred HHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchhhccCCCE
Confidence 77776655432100 00124579999997 7776665543
No 67
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=74.25 E-value=5.2 Score=41.56 Aligned_cols=61 Identities=34% Similarity=0.560 Sum_probs=43.1
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCee
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPIC 223 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~ 223 (451)
...|.||..||||||=....-..+ ..|||--+-+|| ||+=..|+.+ ..++.+..+.++...
T Consensus 167 ~~~D~iItLGGDGTvL~aS~LFq~-------~VPPV~sFslGs-------lGFLtpf~f~---~f~~~l~~v~~~~~~ 227 (409)
T KOG2178|consen 167 NRFDLIITLGGDGTVLYASSLFQR-------SVPPVLSFSLGS-------LGFLTPFPFA---NFQEQLARVLNGRAA 227 (409)
T ss_pred cceeEEEEecCCccEEEehhhhcC-------CCCCeEEeecCC-------ccccccccHH---HHHHHHHHHhcCcce
Confidence 345789999999999877665543 568888877774 6665545543 466667777788743
No 68
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=72.51 E-value=20 Score=36.46 Aligned_cols=88 Identities=15% Similarity=0.148 Sum_probs=54.0
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhH
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv 160 (451)
++++||..+.... .+.+++...|.....+... ..|.. .....+++.+.+. ..+.+.||++|| |++
T Consensus 26 ~~~liv~d~~~~~----~~~~~v~~~l~~~~~~~~~-~~~~~----~~~~v~~~~~~~~-----~~~~d~iIaiGG-Gs~ 90 (339)
T cd08173 26 GRVLVVTGPTTKS----IAGKKVEALLEDEGEVDVV-IVEDA----TYEEVEKVESSAR-----DIGADFVIGVGG-GRV 90 (339)
T ss_pred CeEEEEECCchHH----HHHHHHHHHHHhcCCeEEE-EeCCC----CHHHHHHHHHHhh-----hcCCCEEEEeCC-chH
Confidence 6788888765532 3667777777653212221 22322 2244555555442 135688999998 899
Q ss_pred HHHHHHhhhcccCCCCCCCcEEEecCCCC
Q 013013 161 GWVLGSVGELNKQGREPVPPVAIIPLGTG 189 (451)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~plgiIPlGTg 189 (451)
..+...+.-. ..+|+..||.=.+
T Consensus 91 ~D~aK~~a~~------~~~p~i~iPTT~~ 113 (339)
T cd08173 91 IDVAKVAAYK------LGIPFISVPTAAS 113 (339)
T ss_pred HHHHHHHHHh------cCCCEEEecCccc
Confidence 9988888642 4689999997433
No 69
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=71.84 E-value=12 Score=38.74 Aligned_cols=104 Identities=13% Similarity=0.261 Sum_probs=55.0
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEE-eecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLS-EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~-~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
++++|+..+..-. ....++++..|....+ +.+. ...|.. .....+++++.+. ..+.|.||++|| |
T Consensus 29 ~~~lvv~~~~~~~---~~~~~~v~~~L~~~~~~~~~f~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG-G 95 (377)
T cd08176 29 KKALIVTDKGLVK---IGVVEKVTDVLDEAGIDYVIYDGVKPNP----TITNVKDGLAVFK-----KEGCDFIISIGG-G 95 (377)
T ss_pred CeEEEECCchHhh---cCcHHHHHHHHHHcCCeEEEeCCCCCCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 5777877654432 1245666666654322 2211 122222 1133444444332 246789999998 7
Q ss_pred hHHHHHHHhhhcc----------c--CCCCCCCcEEEecC--CCCcchhhhcC
Q 013013 159 TVGWVLGSVGELN----------K--QGREPVPPVAIIPL--GTGNDLSRSFG 197 (451)
Q Consensus 159 Tv~~Vln~L~~~~----------~--~~~~~~~plgiIPl--GTgNDfArsLg 197 (451)
++..+.-.+.-.. . ......+|+..||. |||-...+.--
T Consensus 96 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~t~~av 148 (377)
T cd08176 96 SPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEVTINYV 148 (377)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhccCCcEE
Confidence 7766655442110 0 00124679999998 88877655443
No 70
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=71.59 E-value=18 Score=37.42 Aligned_cols=101 Identities=14% Similarity=0.170 Sum_probs=52.3
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEE---eecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLS---EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~---~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (451)
++++|+..+.+-... .+.+++.+.|.... +++. ...|.. .....++.++.+. ..+.|.||++||
T Consensus 24 ~r~livt~~~~~~~~--g~~~~v~~~L~~~g-~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG- 90 (375)
T cd08179 24 KKAFIVTGGGSMKKF--GFLDKVEAYLKEAG-IEVEVFEGVEPDP----SVETVLKGAEAMR-----EFEPDWIIALGG- 90 (375)
T ss_pred CeEEEEeCchHHHhC--ChHHHHHHHHHHcC-CeEEEeCCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 677777655443222 25566667675432 2222 222222 1123444443321 245689999999
Q ss_pred hhHHHHHHHhhhc---cc-----------C-CCCCCCcEEEecC--CCCcchhh
Q 013013 158 GTVGWVLGSVGEL---NK-----------Q-GREPVPPVAIIPL--GTGNDLSR 194 (451)
Q Consensus 158 GTv~~Vln~L~~~---~~-----------~-~~~~~~plgiIPl--GTgNDfAr 194 (451)
|++..+.-.+.-. .. . .....+|+..||. |||--..+
T Consensus 91 GSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtagTGSE~t~ 144 (375)
T cd08179 91 GSPIDAAKAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSGTATEVTA 144 (375)
T ss_pred ccHHHHHHHHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCchhHhhCC
Confidence 6766665554210 00 0 0023469999997 77765554
No 71
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=71.33 E-value=11 Score=38.67 Aligned_cols=103 Identities=22% Similarity=0.297 Sum_probs=56.0
Q ss_pred eEEEEEcCCCCCCChhHHHHHHHHhhcccCe--eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 82 PMVVFINSRSGGRHGPELKERLQELMGKEQV--FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 82 ~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~--~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
+++||..| +-... .+.+++...|.+..+ ..+....+.. .....+++++.+. ..+.|.||++|| |+
T Consensus 23 r~lvVt~~-~~~~~--~~~~~v~~~L~~~~i~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGG-GS 89 (366)
T PF00465_consen 23 RVLVVTDP-SLSKS--GLVDRVLDALEEAGIEVQVFDGVGPNP----TLEDVDEAAEQAR-----KFGADCIIAIGG-GS 89 (366)
T ss_dssp EEEEEEEH-HHHHH--THHHHHHHHHHHTTCEEEEEEEESSS-----BHHHHHHHHHHHH-----HTTSSEEEEEES-HH
T ss_pred CEEEEECc-hHHhC--ccHHHHHHHHhhCceEEEEEecCCCCC----cHHHHHHHHHHHH-----hcCCCEEEEcCC-CC
Confidence 88999987 44322 267778777754322 1222222222 1234455554432 246789999999 66
Q ss_pred HHHHHHHhhhcccC-------------CCCCCCcEEEecC--CCCcchhhhcC
Q 013013 160 VGWVLGSVGELNKQ-------------GREPVPPVAIIPL--GTGNDLSRSFG 197 (451)
Q Consensus 160 v~~Vln~L~~~~~~-------------~~~~~~plgiIPl--GTgNDfArsLg 197 (451)
+-.++-.+.-.... ...+.+|+..||. |||-.+.+...
T Consensus 90 ~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtGsE~t~~av 142 (366)
T PF00465_consen 90 VMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTGSEVTPYAV 142 (366)
T ss_dssp HHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSSGCCSSEEE
T ss_pred cCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcccccccccccc
Confidence 65555444322110 0123479999998 77766665443
No 72
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=71.28 E-value=15 Score=38.04 Aligned_cols=105 Identities=18% Similarity=0.202 Sum_probs=57.8
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eE-EEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
++++||..+.+-.. ..+.+++...|....+ +. +....|.. .....++.++.+. ..+.|.||++|| |
T Consensus 26 ~r~livt~~~~~~~--~g~~~~v~~~L~~~~~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IiavGG-G 93 (380)
T cd08185 26 KKALIVTGNGSSKK--TGYLDRVIELLKQAGVEVVVFDKVEPNP----TTTTVMEGAALAR-----EEGCDFVVGLGG-G 93 (380)
T ss_pred CeEEEEeCCCchhh--ccHHHHHHHHHHHcCCeEEEeCCccCCC----CHHHHHHHHHHHH-----HcCCCEEEEeCC-c
Confidence 78899988766222 2366677777764322 21 11222322 1133444443322 246789999998 7
Q ss_pred hHHHHHHHhhhccc-----------------CCCCCCCcEEEecC--CCCcchhhhcC
Q 013013 159 TVGWVLGSVGELNK-----------------QGREPVPPVAIIPL--GTGNDLSRSFG 197 (451)
Q Consensus 159 Tv~~Vln~L~~~~~-----------------~~~~~~~plgiIPl--GTgNDfArsLg 197 (451)
++..+.-.+.-... ......+|+..||. |||--..+.--
T Consensus 94 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~av 151 (380)
T cd08185 94 SSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAGTGSEADPWAV 151 (380)
T ss_pred cHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCChhhhccCCeEE
Confidence 77766655432100 00124579999996 88776665443
No 73
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=69.52 E-value=17 Score=37.14 Aligned_cols=95 Identities=20% Similarity=0.202 Sum_probs=52.8
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
.++++||..+..-. ...+++.+.|..... +.+......+ ........+++++.+.+ ......+.||++|| |
T Consensus 24 ~~~~livtd~~~~~----~~~~~l~~~L~~~g~~~~~~~~~~~e-~~~~~~~v~~~~~~~~~--~~~~r~d~IIaiGG-G 95 (345)
T cd08195 24 GSKILIVTDENVAP----LYLEKLKAALEAAGFEVEVIVIPAGE-ASKSLETLEKLYDALLE--AGLDRKSLIIALGG-G 95 (345)
T ss_pred CCeEEEEECCchHH----HHHHHHHHHHHhcCCceEEEEeCCCC-CcCCHHHHHHHHHHHHH--cCCCCCCeEEEECC-h
Confidence 46888998876643 356677777765321 2222221111 01122344444443321 01233478888888 8
Q ss_pred hHHHHHHHhhhcccCCCCCCCcEEEecC
Q 013013 159 TVGWVLGSVGELNKQGREPVPPVAIIPL 186 (451)
Q Consensus 159 Tv~~Vln~L~~~~~~~~~~~~plgiIPl 186 (451)
++..+...+.... ...+|+..||.
T Consensus 96 sv~D~ak~vA~~~----~rgip~i~VPT 119 (345)
T cd08195 96 VVGDLAGFVAATY----MRGIDFIQIPT 119 (345)
T ss_pred HHHhHHHHHHHHH----hcCCCeEEcch
Confidence 9998887775322 24689999996
No 74
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=69.34 E-value=23 Score=36.65 Aligned_cols=103 Identities=18% Similarity=0.297 Sum_probs=54.0
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eE-EEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (451)
.++++|+..+..-. . ...+++...|....+ +. +....|.. .....+++++.+. ..+.|.||++||
T Consensus 26 ~~~~lvvt~~~~~~-~--g~~~~v~~~L~~~g~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~d~IIaiGG- 92 (374)
T cd08189 26 VKKVLIVTDKGLVK-L--GLLDKVLEALEGAGIEYAVYDGVPPDP----TIENVEAGLALYR-----ENGCDAILAVGG- 92 (374)
T ss_pred CCeEEEEeCcchhh-c--ccHHHHHHHHHhcCCeEEEeCCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 36888887765432 1 245666666754322 21 11222222 1122344443321 246688999998
Q ss_pred hhHHHHHHHhhhcccC-------------CCCCCCcEEEecC--CCCcchhhh
Q 013013 158 GTVGWVLGSVGELNKQ-------------GREPVPPVAIIPL--GTGNDLSRS 195 (451)
Q Consensus 158 GTv~~Vln~L~~~~~~-------------~~~~~~plgiIPl--GTgNDfArs 195 (451)
|++..+.-.+.-.... ...+.+|+..||. |||-...+.
T Consensus 93 GS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGsE~t~~ 145 (374)
T cd08189 93 GSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTGSEVTIA 145 (374)
T ss_pred ccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCccccccCCe
Confidence 7777666554221100 0113479999997 787665553
No 75
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=68.20 E-value=21 Score=36.80 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=55.1
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEE---EeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEc
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL---SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAG 155 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl---~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~G 155 (451)
.++++||..+.... .+.+++.+.|..... +.+ ....+.. .....+++.+.+.+ ......+.||++|
T Consensus 31 ~~~~livtd~~~~~----~~~~~v~~~L~~~gi~~~~~~~~~~e~~~----~~~~v~~~~~~~~~--~~~~r~d~IIavG 100 (358)
T PRK00002 31 GKKVAIVTDETVAP----LYLEKLRASLEAAGFEVDVVVLPDGEQYK----SLETLEKIYDALLE--AGLDRSDTLIALG 100 (358)
T ss_pred CCeEEEEECCchHH----HHHHHHHHHHHhcCCceEEEEeCCCCCCC----CHHHHHHHHHHHHH--cCCCCCCEEEEEc
Confidence 46888888765532 366777777765422 221 1111111 22334444443221 0123457888888
Q ss_pred CchhHHHHHHHhhhcccCCCCCCCcEEEecC--CCCcch
Q 013013 156 GDGTVGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDL 192 (451)
Q Consensus 156 GDGTv~~Vln~L~~~~~~~~~~~~plgiIPl--GTgNDf 192 (451)
| |++..++..+.... ...+|+..||. ++.+|-
T Consensus 101 G-Gsv~D~aK~iA~~~----~~gip~i~IPTT~~s~~ds 134 (358)
T PRK00002 101 G-GVIGDLAGFAAATY----MRGIRFIQVPTTLLAQVDS 134 (358)
T ss_pred C-cHHHHHHHHHHHHh----cCCCCEEEcCchhhhcccc
Confidence 8 89998888775322 24689999997 444443
No 76
>PRK15138 aldehyde reductase; Provisional
Probab=68.18 E-value=23 Score=36.92 Aligned_cols=104 Identities=13% Similarity=0.185 Sum_probs=52.7
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhH
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv 160 (451)
++++||.-+.+=.. ....+++...|....+..+....|..- ....++.++.+. ..+.|.||++|| |++
T Consensus 30 ~~~livt~~~~~~~--~g~~~~v~~~L~~~~~~~f~~v~~~p~----~~~v~~~~~~~~-----~~~~D~IIaiGG-GS~ 97 (387)
T PRK15138 30 ARVLITYGGGSVKK--TGVLDQVLDALKGMDVLEFGGIEPNPT----YETLMKAVKLVR-----EEKITFLLAVGG-GSV 97 (387)
T ss_pred CeEEEECCCchHHh--cCcHHHHHHHhcCCeEEEECCccCCCC----HHHHHHHHHHHH-----HcCCCEEEEeCC-hHH
Confidence 67777755443221 234566776665322222222333321 123444444321 246789999999 555
Q ss_pred HHHHHHhhhc---c------------cCCCCCCCcEEEecC--CCCcchhhhc
Q 013013 161 GWVLGSVGEL---N------------KQGREPVPPVAIIPL--GTGNDLSRSF 196 (451)
Q Consensus 161 ~~Vln~L~~~---~------------~~~~~~~~plgiIPl--GTgNDfArsL 196 (451)
-.+.-.+.-. . .....+.+|+..||. |||-.....-
T Consensus 98 iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTTaGTGSE~t~~a 150 (387)
T PRK15138 98 LDGTKFIAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTLPATGSESNAGA 150 (387)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecCCccccccCCCE
Confidence 5544443210 0 000123578999998 8887666543
No 77
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=68.01 E-value=23 Score=36.03 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=50.9
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhH
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv 160 (451)
++++||..+.. .....+++.+.|.......+....+.. .....+++++.+. ..+.|.||++|| |++
T Consensus 24 ~~~livt~~~~----~~~~~~~v~~~l~~~~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~IIaiGG-Gs~ 89 (337)
T cd08177 24 SRALVLTTPSL----ATKLAERVASALGDRVAGTFDGAVMHT----PVEVTEAAVAAAR-----EAGADGIVAIGG-GST 89 (337)
T ss_pred CeEEEEcChHH----HHHHHHHHHHHhccCCcEEeCCCCCCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC-cHH
Confidence 57777765332 222667777777654221122222222 1123344444321 246688999998 899
Q ss_pred HHHHHHhhhcccCCCCCCCcEEEecC-CCCc
Q 013013 161 GWVLGSVGELNKQGREPVPPVAIIPL-GTGN 190 (451)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~plgiIPl-GTgN 190 (451)
..+.-.+.-. ..+|+..||. -||.
T Consensus 90 iD~aK~ia~~------~~~p~i~IPTtatgs 114 (337)
T cd08177 90 IDLAKAIALR------TGLPIIAIPTTLSGS 114 (337)
T ss_pred HHHHHHHHHH------hcCCEEEEcCCchhh
Confidence 9888877542 3578999995 2443
No 78
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=64.97 E-value=29 Score=36.30 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=54.2
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEE---eecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLS---EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~---~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GG 156 (451)
.++++||.-+..-. ....+++...|.... +++. ...|.+ .....++.++.+. ..+.|.||++||
T Consensus 21 ~~k~liVtd~~~~~---~g~~~~v~~~L~~~g-i~~~~f~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGG 87 (398)
T cd08178 21 KKRAFIVTDRFMVK---LGYVDKVIDVLKRRG-VETEVFSDVEPDP----SLETVRKGLELMN-----SFKPDTIIALGG 87 (398)
T ss_pred CCeEEEEcChhHHh---CccHHHHHHHHHHCC-CeEEEecCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC
Confidence 36777776543221 125566777776542 2222 222322 1123344443321 246689999999
Q ss_pred chhHHHHHHHhhhc---c---------------c----C-CCCCCCcEEEecC--CCCcchhhhc
Q 013013 157 DGTVGWVLGSVGEL---N---------------K----Q-GREPVPPVAIIPL--GTGNDLSRSF 196 (451)
Q Consensus 157 DGTv~~Vln~L~~~---~---------------~----~-~~~~~~plgiIPl--GTgNDfArsL 196 (451)
|++..+.-.+.-. . . . .....+|+..||. |||-...+..
T Consensus 88 -GS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~I~VPTTagTGSE~t~~a 151 (398)
T cd08178 88 -GSPMDAAKIMWLFYEHPEVDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPTTSGTGSEVTPFA 151 (398)
T ss_pred -ccHHHHHHHHHHHHhCCCcchhHhhhhhcccccccccccccCCCCCEEEeCCCCcccccccCeE
Confidence 7777666554311 0 0 0 0014579999997 8887665443
No 79
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=64.36 E-value=26 Score=35.76 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=51.5
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
.++++||.++..- ....+++.+.|..... +........+ -.......+++++.+.+. .....+.||++|| |
T Consensus 20 ~~~~livtd~~~~----~~~~~~v~~~L~~~g~~~~~~~~~~~e-~~~~~~~v~~~~~~~~~~--~~~r~d~IIavGG-G 91 (344)
T TIGR01357 20 PSKLVIITDETVA----DLYADKLLEALQALGYNVLKLTVPDGE-ESKSLETVQRLYDQLLEA--GLDRSSTIIALGG-G 91 (344)
T ss_pred CCeEEEEECCchH----HHHHHHHHHHHHhcCCceeEEEeCCCC-CCCCHHHHHHHHHHHHHc--CCCCCCEEEEEcC-h
Confidence 3788888875553 2356677777765322 2211111111 001123344444433210 1233478888888 8
Q ss_pred hHHHHHHHhhhcccCCCCCCCcEEEecC
Q 013013 159 TVGWVLGSVGELNKQGREPVPPVAIIPL 186 (451)
Q Consensus 159 Tv~~Vln~L~~~~~~~~~~~~plgiIPl 186 (451)
++..+...+.... ...+|+..||.
T Consensus 92 sv~D~aK~iA~~~----~~~~p~i~VPT 115 (344)
T TIGR01357 92 VVGDLAGFVAATY----MRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHHHHHH----ccCCCEEEecC
Confidence 8888887775322 24689999997
No 80
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=63.88 E-value=28 Score=35.80 Aligned_cols=98 Identities=21% Similarity=0.323 Sum_probs=50.5
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCe--eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV--FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~--~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
++++||..+.+- ....++..|....+ +.+....|.. .....+++++.+. ..+.|.||++|| |
T Consensus 24 ~~~livtd~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG-G 87 (367)
T cd08182 24 KRVLLVTGPRSA------IASGLTDILKPLGTLVVVFDDVQPNP----DLEDLAAGIRLLR-----EFGPDAVLAVGG-G 87 (367)
T ss_pred CeEEEEeCchHH------HHHHHHHHHHHcCCeEEEEcCcCCCc----CHHHHHHHHHHHH-----hcCcCEEEEeCC-c
Confidence 677777655443 33445555554321 1122222322 1123444444321 235688999998 7
Q ss_pred hHHHHHHHhhhccc----------------CCCCCCCcEEEecC--CCCcchhh
Q 013013 159 TVGWVLGSVGELNK----------------QGREPVPPVAIIPL--GTGNDLSR 194 (451)
Q Consensus 159 Tv~~Vln~L~~~~~----------------~~~~~~~plgiIPl--GTgNDfAr 194 (451)
++..+.-.+.-... ......+|+..||. |||--.+.
T Consensus 88 s~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~t~ 141 (367)
T cd08182 88 SVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAGTGSEVTP 141 (367)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCCchhhhCC
Confidence 77777665532200 00124679999998 66654443
No 81
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=63.26 E-value=53 Score=34.40 Aligned_cols=105 Identities=19% Similarity=0.148 Sum_probs=55.0
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCe----eEEEeecccchhccch-hHHHHHHhccchhhhccCCCcEEEEE
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV----FDLSEVKPHEFVQYGL-ACLEKLAELGDFCAKDTRQKMRIVVA 154 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~----~dl~~~~p~~~~t~~~-~~a~~la~~~~~~~~~~~~~~~Ivv~ 154 (451)
.++++||..+.--.- ...+.+.+...|..... |+....-+.....+.. ...+++.+.+.+ ......+.||++
T Consensus 42 ~~r~liVtD~~v~~~-~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~--~~~dr~d~IIai 118 (389)
T PRK06203 42 PKKVLVVIDSGVLRA-HPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINR--HGIDRHSYVLAI 118 (389)
T ss_pred CCeEEEEECchHHHh-hhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHH--cCCCCCceEEEe
Confidence 477888887655431 12356778777764332 3322111111111111 223334333221 112345688888
Q ss_pred cCchhHHHHHHHhhhcccCCCCCCCcEEEecC--CCCcch
Q 013013 155 GGDGTVGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDL 192 (451)
Q Consensus 155 GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPl--GTgNDf 192 (451)
|| |++..+...+.-.. ...+|+-.||. |+..|-
T Consensus 119 GG-Gsv~D~ak~iA~~~----~rgip~I~IPTTlla~vda 153 (389)
T PRK06203 119 GG-GAVLDMVGYAAATA----HRGVRLIRIPTTVLAQNDS 153 (389)
T ss_pred CC-cHHHHHHHHHHHHh----cCCCCEEEEcCCCccccCC
Confidence 88 89988887775332 24679999996 344443
No 82
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=62.96 E-value=36 Score=35.47 Aligned_cols=106 Identities=12% Similarity=0.145 Sum_probs=55.3
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-e-EEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-F-DLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~-dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (451)
.++++|+.-+..- ...+++++...|....+ + .+....|.+- ....++.++.+ + ..+.|.||++||
T Consensus 31 ~~~~livt~~~~~---~~g~~~~v~~~L~~~~i~~~~f~~v~~np~----~~~v~~~~~~~----~-~~~~D~IiaiGG- 97 (383)
T PRK09860 31 FTRTLIVTDNMLT---KLGMAGDVQKALEERNIFSVIYDGTQPNPT----TENVAAGLKLL----K-ENNCDSVISLGG- 97 (383)
T ss_pred CCEEEEEcCcchh---hCccHHHHHHHHHHcCCeEEEeCCCCCCcC----HHHHHHHHHHH----H-HcCCCEEEEeCC-
Confidence 3677777653221 12355677777765432 1 1222333221 12334444332 2 246789999999
Q ss_pred hhHHHHHHHhhhc---c---------cCCCCCCCcEEEecC--CCCcchhhhcCC
Q 013013 158 GTVGWVLGSVGEL---N---------KQGREPVPPVAIIPL--GTGNDLSRSFGW 198 (451)
Q Consensus 158 GTv~~Vln~L~~~---~---------~~~~~~~~plgiIPl--GTgNDfArsLg~ 198 (451)
|++-.+.-.+.-. . .......+|+..||. |||-...+.--+
T Consensus 98 GS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagTGSE~t~~avi 152 (383)
T PRK09860 98 GSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCII 152 (383)
T ss_pred chHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcchhccCceEEE
Confidence 5555554443210 0 000124679999998 888877665443
No 83
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=62.37 E-value=27 Score=35.56 Aligned_cols=89 Identities=11% Similarity=0.071 Sum_probs=51.1
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhH
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv 160 (451)
++++||..+..-.. ..+++...|.... +++....+...........+++++.+. + ..+.||++|| |++
T Consensus 25 ~kvlivtd~~~~~~----~~~~i~~~L~~~~-~~~~i~~~~~~~~p~~~~v~~~~~~~~----~--~~d~IIaiGG-Gsv 92 (332)
T cd08549 25 SKIMIVCGNNTYKV----AGKEIIERLESNN-FTKEVLERDSLLIPDEYELGEVLIKLD----K--DTEFLLGIGS-GTI 92 (332)
T ss_pred CcEEEEECCcHHHH----HHHHHHHHHHHcC-CeEEEEecCCCCCCCHHHHHHHHHHhh----c--CCCEEEEECC-cHH
Confidence 67888888666432 2356666665432 222111100000012234455554432 2 5678999998 899
Q ss_pred HHHHHHhhhcccCCCCCCCcEEEecCC
Q 013013 161 GWVLGSVGELNKQGREPVPPVAIIPLG 187 (451)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~plgiIPlG 187 (451)
..+...+.-. ..+|+..||.=
T Consensus 93 ~D~aK~iA~~------~gip~I~VPTT 113 (332)
T cd08549 93 IDLVKFVSFK------VGKPFISVPTA 113 (332)
T ss_pred HHHHHHHHHH------cCCCEEEeCCC
Confidence 9988887632 46899999973
No 84
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=62.11 E-value=36 Score=35.00 Aligned_cols=48 Identities=31% Similarity=0.329 Sum_probs=29.4
Q ss_pred CCcEEEEEcCchhHHHHHHHhhhccc----------C--CCCCCCcEEEecC--CCCcchhhh
Q 013013 147 QKMRIVVAGGDGTVGWVLGSVGELNK----------Q--GREPVPPVAIIPL--GTGNDLSRS 195 (451)
Q Consensus 147 ~~~~Ivv~GGDGTv~~Vln~L~~~~~----------~--~~~~~~plgiIPl--GTgNDfArs 195 (451)
+.|.||++|| |++-.+.-.+.-.-. . ...+.+|+..||. |||--..+.
T Consensus 81 ~~D~IIaiGG-GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGTGSE~t~~ 142 (347)
T cd08184 81 LPCAIVGIGG-GSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGTGAEASRT 142 (347)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCccccccCCc
Confidence 5789999998 666665544421100 0 0123468999996 888766653
No 85
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=61.15 E-value=47 Score=34.79 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=52.6
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEE-eecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLS-EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~-~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
++++|+.-+..- ...+.+++...|....+ +.+. ...|.+- ....++.++.+ + ..+.|.||++|| |
T Consensus 50 ~~~lvv~~~~~~---~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~----~~~v~~~~~~~----r-~~~~D~IiavGG-G 116 (395)
T PRK15454 50 KHLFVMADSFLH---QAGMTAGLTRSLAVKGIAMTLWPCPVGEPC----ITDVCAAVAQL----R-ESGCDGVIAFGG-G 116 (395)
T ss_pred CEEEEEcCcchh---hCccHHHHHHHHHHcCCeEEEECCCCCCcC----HHHHHHHHHHH----H-hcCcCEEEEeCC-h
Confidence 566655433211 12356677777765443 2221 2222221 12234444332 2 257789999999 5
Q ss_pred hHHHHHHHhhhc---cc---------CCCCCCCcEEEecC--CCCcchhhhcC
Q 013013 159 TVGWVLGSVGEL---NK---------QGREPVPPVAIIPL--GTGNDLSRSFG 197 (451)
Q Consensus 159 Tv~~Vln~L~~~---~~---------~~~~~~~plgiIPl--GTgNDfArsLg 197 (451)
++-.+.-.+.-. .. ....+.+|+..||. |||-...+.--
T Consensus 117 S~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTtaGTGSE~t~~av 169 (395)
T PRK15454 117 SVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAGTGSETTNVTV 169 (395)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCCCcchhhhCCeEE
Confidence 555544333111 00 00124579999997 88877766443
No 86
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=60.75 E-value=70 Score=33.34 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=55.2
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eE---EEeecccchhccch-hHHHHHHhccchhhhccCCCcEEEEE
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD---LSEVKPHEFVQYGL-ACLEKLAELGDFCAKDTRQKMRIVVA 154 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~d---l~~~~p~~~~t~~~-~~a~~la~~~~~~~~~~~~~~~Ivv~ 154 (451)
.++++||.++.-.. ....+.+.+...|....+ |. .....|.....+.. ...+++.+.+.+ ......+.||+.
T Consensus 30 ~~r~lvVtD~~v~~-~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~--~~~~r~~~IIal 106 (369)
T cd08198 30 RPKVLVVIDSGVAQ-ANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINR--HGIDRHSYVIAI 106 (369)
T ss_pred CCeEEEEECcchHH-hhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHH--cCCCcCcEEEEE
Confidence 46889999876654 222356777777754321 22 11112222122221 223344443221 112344688888
Q ss_pred cCchhHHHHHHHhhhcccCCCCCCCcEEEecCC
Q 013013 155 GGDGTVGWVLGSVGELNKQGREPVPPVAIIPLG 187 (451)
Q Consensus 155 GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlG 187 (451)
|| |++..++..+.... ...+|+-.||.=
T Consensus 107 GG-G~v~D~ag~vA~~~----~rGip~I~IPTT 134 (369)
T cd08198 107 GG-GAVLDAVGYAAATA----HRGVRLIRIPTT 134 (369)
T ss_pred CC-hHHHHHHHHHHHHh----cCCCCEEEECCC
Confidence 88 99999988876532 256899999963
No 87
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=60.68 E-value=35 Score=35.17 Aligned_cols=101 Identities=20% Similarity=0.270 Sum_probs=52.7
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eE-EEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
++++|+..+..-. ....+++.+.|..... +. +....|.. .....++.++.+. ..+.|.||++|| |
T Consensus 25 ~~~liv~~~~~~~---~~~~~~v~~~L~~~g~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~d~IIaiGG-G 91 (370)
T cd08192 25 KRPLIVTDPGLAA---LGLVARVLALLEDAGLAAALFDEVPPNP----TEAAVEAGLAAYR-----AGGCDGVIAFGG-G 91 (370)
T ss_pred CeEEEEcCcchhh---CccHHHHHHHHHHcCCeEEEeCCCCCCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 5777877655422 1245566666764321 11 11222222 1123444444331 246689999999 7
Q ss_pred hHHHHHHHhhhccc--------------C--CCCCCCcEEEecC--CCCcchhh
Q 013013 159 TVGWVLGSVGELNK--------------Q--GREPVPPVAIIPL--GTGNDLSR 194 (451)
Q Consensus 159 Tv~~Vln~L~~~~~--------------~--~~~~~~plgiIPl--GTgNDfAr 194 (451)
++..+.-.+.-... . ...+.+|+..||. |||-...+
T Consensus 92 SviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~t~ 145 (370)
T cd08192 92 SALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAGTGSEVGR 145 (370)
T ss_pred hHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCchhhhhCC
Confidence 87777665532210 0 0023478999997 66654443
No 88
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=60.01 E-value=51 Score=29.91 Aligned_cols=81 Identities=16% Similarity=0.290 Sum_probs=46.9
Q ss_pred CCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhHHHHHHHhhhc
Q 013013 92 GGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGEL 170 (451)
Q Consensus 92 G~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv~~Vln~L~~~ 170 (451)
|+..-....++....|....+ |++.+...+. .+..+.+++++.. ...-...|.++|+++-+.-++.++..
T Consensus 8 gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR----~p~~l~~~~~~~~----~~~~~viIa~AG~~a~Lpgvva~~t~- 78 (150)
T PF00731_consen 8 GSTSDLPIAEEAAKTLEEFGIPYEVRVASAHR----TPERLLEFVKEYE----ARGADVIIAVAGMSAALPGVVASLTT- 78 (150)
T ss_dssp SSGGGHHHHHHHHHHHHHTT-EEEEEE--TTT----SHHHHHHHHHHTT----TTTESEEEEEEESS--HHHHHHHHSS-
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEEeccC----CHHHHHHHHHHhc----cCCCEEEEEECCCcccchhhheeccC-
Confidence 443334567777777776554 7777765443 5566677776643 11123468889999999999999863
Q ss_pred ccCCCCCCCcEEEecCCCC
Q 013013 171 NKQGREPVPPVAIIPLGTG 189 (451)
Q Consensus 171 ~~~~~~~~~plgiIPlGTg 189 (451)
.|-||+ |.-++
T Consensus 79 -------~PVIgv-P~~~~ 89 (150)
T PF00731_consen 79 -------LPVIGV-PVSSG 89 (150)
T ss_dssp -------S-EEEE-EE-ST
T ss_pred -------CCEEEe-ecCcc
Confidence 244444 76544
No 89
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=58.31 E-value=38 Score=35.14 Aligned_cols=104 Identities=17% Similarity=0.324 Sum_probs=54.1
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEE-EeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl-~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (451)
.++++|+..+..-.. .+.+++...|....+ +.+ ....|.+ .....++.++.+ + ..+.|.||++||
T Consensus 29 ~~r~lvvt~~~~~~~---g~~~~v~~~L~~~~i~~~~~~~v~~~p----~~~~v~~~~~~~----~-~~~~D~IiaiGG- 95 (379)
T TIGR02638 29 FKKALVVTDKDLIKF---GVADKVTDLLDEAGIAYELFDEVKPNP----TITVVKAGVAAF----K-ASGADYLIAIGG- 95 (379)
T ss_pred CCEEEEEcCcchhhc---cchHHHHHHHHHCCCeEEEECCCCCCc----CHHHHHHHHHHH----H-hcCCCEEEEeCC-
Confidence 367888877543321 255666666654322 221 1222222 113334444332 2 245689999999
Q ss_pred hhHHHHHHHhhhccc------------C--CCCCCCcEEEecC--CCCcchhhhc
Q 013013 158 GTVGWVLGSVGELNK------------Q--GREPVPPVAIIPL--GTGNDLSRSF 196 (451)
Q Consensus 158 GTv~~Vln~L~~~~~------------~--~~~~~~plgiIPl--GTgNDfArsL 196 (451)
|++..+.-.+.-... . .....+|+..||. |||-...+..
T Consensus 96 GSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTGse~t~~a 150 (379)
T TIGR02638 96 GSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTAAEVTINY 150 (379)
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchhhhhCCEE
Confidence 777766644321100 0 0124579999998 7776555543
No 90
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=58.29 E-value=41 Score=34.11 Aligned_cols=34 Identities=24% Similarity=0.146 Sum_probs=27.4
Q ss_pred CCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCC
Q 013013 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLG 187 (451)
Q Consensus 147 ~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlG 187 (451)
..+.||++|| |++..+...+... ..+|+..||.=
T Consensus 75 ~~d~iIaiGG-Gsv~D~aK~vA~~------~~~p~i~vPTt 108 (331)
T cd08174 75 NVDAVVGIGG-GKVIDVAKYAAFL------RGIPLSVPTTN 108 (331)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHhh------cCCCEEEecCc
Confidence 4678999998 8999998887652 56899999973
No 91
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=57.43 E-value=19 Score=35.35 Aligned_cols=94 Identities=16% Similarity=0.144 Sum_probs=50.3
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
.++++|+.-+.. ....-+++++.|... .|++....... .+-......++.+.+. ..+.+.||++|| ||
T Consensus 19 ~~~~lvv~d~~t----~~~~g~~v~~~l~~~-g~~v~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~d~ii~vGg-G~ 86 (250)
T PF13685_consen 19 LKKVLVVTDENT----YKAAGEKVEESLKSA-GIEVAVIEEFV-GDADEDEVEKLVEALR-----PKDADLIIGVGG-GT 86 (250)
T ss_dssp -SEEEEEEETTH----HHHHHHHHHHHHHTT-T-EEEEEE-EE----BHHHHHHHHTTS-------TT--EEEEEES-HH
T ss_pred CCcEEEEEcCCH----HHHHHHHHHHHHHHc-CCeEEEEecCC-CCCCHHHHHHHHHHhc-----ccCCCEEEEeCC-cH
Confidence 357888876543 334556777777654 34444321000 0112234555554431 246678888888 99
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecCCCCcc
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGND 191 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPlGTgND 191 (451)
++.+.--+... .+.|+..+|.=-.||
T Consensus 87 i~D~~K~~A~~------~~~p~isVPTa~S~D 112 (250)
T PF13685_consen 87 IIDIAKYAAFE------LGIPFISVPTAASHD 112 (250)
T ss_dssp HHHHHHHHHHH------HT--EEEEES--SSG
T ss_pred HHHHHHHHHHh------cCCCEEEeccccccc
Confidence 99998877653 568999999865555
No 92
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=56.79 E-value=42 Score=34.66 Aligned_cols=102 Identities=19% Similarity=0.234 Sum_probs=52.8
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eE-EEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (451)
.++++|+.-+.-.. ....+++...|....+ +. +....+.. .....++.++.+. ..+.|.||++||
T Consensus 26 ~~~~livt~~~~~~---~~~~~~v~~~L~~~~~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGG- 92 (376)
T cd08193 26 AKRVLVVTDPGILK---AGLIDPLLASLEAAGIEVTVFDDVEADP----PEAVVEAAVEAAR-----AAGADGVIGFGG- 92 (376)
T ss_pred CCeEEEEcCcchhh---CccHHHHHHHHHHcCCeEEEECCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 36777776543211 1245566666654322 21 11122222 1233445554432 246689999998
Q ss_pred hhHHHHHHHhhhccc------------CCCCCCCcEEEecC--CCCcchhh
Q 013013 158 GTVGWVLGSVGELNK------------QGREPVPPVAIIPL--GTGNDLSR 194 (451)
Q Consensus 158 GTv~~Vln~L~~~~~------------~~~~~~~plgiIPl--GTgNDfAr 194 (451)
|++..+.-.+.-... ......+|+..||. |||-....
T Consensus 93 Gs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgSe~t~ 143 (376)
T cd08193 93 GSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTAGTGSEVTP 143 (376)
T ss_pred chHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCCcchHhhCC
Confidence 787777665532210 00024579999997 67654444
No 93
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=56.31 E-value=43 Score=34.80 Aligned_cols=101 Identities=20% Similarity=0.251 Sum_probs=53.7
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEe---ecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSE---VKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~---~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (451)
++++|+..+.... ....+++...|.... +++.+ ..|..- .....+.++.+ + ..+.|.||++||
T Consensus 23 ~~~livt~~~~~~---~~~~~~v~~~L~~~~-~~~~~f~~v~~~~~----~~~v~~~~~~~----~-~~~~D~IIaiGG- 88 (386)
T cd08191 23 SRALIVTDERMAG---TPVFAELVQALAAAG-VEVEVFDGVLPDLP----RSELCDAASAA----A-RAGPDVIIGLGG- 88 (386)
T ss_pred CeEEEEECcchhh---cchHHHHHHHHHHcC-CeEEEECCCCCCcC----HHHHHHHHHHH----H-hcCCCEEEEeCC-
Confidence 6788888655443 135566776676532 22222 211110 01122222221 2 246688999998
Q ss_pred hhHHHHHHHhhhccc------------CCCCCCCcEEEecC--CCCcchhhh
Q 013013 158 GTVGWVLGSVGELNK------------QGREPVPPVAIIPL--GTGNDLSRS 195 (451)
Q Consensus 158 GTv~~Vln~L~~~~~------------~~~~~~~plgiIPl--GTgNDfArs 195 (451)
|++..+.-.+.-... ....+.+|+..||. |||-...+.
T Consensus 89 GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~ 140 (386)
T cd08191 89 GSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAGTGSEVTPV 140 (386)
T ss_pred chHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCCcchhhhCCe
Confidence 788777766532110 00123679999997 787766654
No 94
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=56.20 E-value=45 Score=34.62 Aligned_cols=105 Identities=14% Similarity=0.309 Sum_probs=54.4
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEE-EeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl-~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (451)
.++++|+..+..-. ..+.+++...|....+ +.+ ....|.+ .....++.++.+ + ..+.|.||++||
T Consensus 30 ~~~~lvvtd~~~~~---~g~~~~v~~~L~~~g~~~~~~~~v~~~p----~~~~v~~~~~~~----~-~~~~D~IIaiGG- 96 (382)
T PRK10624 30 FKKALIVTDKTLVK---CGVVAKVTDVLDAAGLAYEIYDGVKPNP----TIEVVKEGVEVF----K-ASGADYLIAIGG- 96 (382)
T ss_pred CCEEEEEeCcchhh---CcchHHHHHHHHHCCCeEEEeCCCCCCc----CHHHHHHHHHHH----H-hcCCCEEEEeCC-
Confidence 36788887754332 1255666666654322 211 1222222 112333333332 1 235688999998
Q ss_pred hhHHHHHHHhhhccc------------C--CCCCCCcEEEecC--CCCcchhhhcC
Q 013013 158 GTVGWVLGSVGELNK------------Q--GREPVPPVAIIPL--GTGNDLSRSFG 197 (451)
Q Consensus 158 GTv~~Vln~L~~~~~------------~--~~~~~~plgiIPl--GTgNDfArsLg 197 (451)
|++..+.-.+.-... . .....+|+..||. |||--..+..-
T Consensus 97 GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTagTGse~t~~av 152 (382)
T PRK10624 97 GSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAGTAAEVTINYV 152 (382)
T ss_pred hHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCchhhhhcceee
Confidence 777777654321000 0 0124579999997 78776666443
No 95
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=56.09 E-value=53 Score=33.68 Aligned_cols=90 Identities=14% Similarity=0.164 Sum_probs=52.7
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhH
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv 160 (451)
++++||..+.+-.. ..++++..|.....+... ..|.. .....+++++.+. ..+.+.||++|| |++
T Consensus 35 ~~~livtd~~~~~~----~~~~l~~~l~~~~~~~~~-~~~~~----t~~~v~~~~~~~~-----~~~~d~IIaiGG-Gsv 99 (350)
T PRK00843 35 GRALIVTGPTTKKI----AGDRVEENLEDAGDVEVV-IVDEA----TMEEVEKVEEKAK-----DVNAGFLIGVGG-GKV 99 (350)
T ss_pred CeEEEEECCcHHHH----HHHHHHHHHHhcCCeeEE-eCCCC----CHHHHHHHHHHhh-----ccCCCEEEEeCC-chH
Confidence 68889988776532 335566666432111111 22221 2234455554432 134678898988 999
Q ss_pred HHHHHHhhhcccCCCCCCCcEEEecCCCCcc
Q 013013 161 GWVLGSVGELNKQGREPVPPVAIIPLGTGND 191 (451)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~plgiIPlGTgND 191 (451)
..+...+.- ...+|+..||.=-++|
T Consensus 100 ~D~ak~vA~------~rgip~I~IPTT~~td 124 (350)
T PRK00843 100 IDVAKLAAY------RLGIPFISVPTAASHD 124 (350)
T ss_pred HHHHHHHHH------hcCCCEEEeCCCccCC
Confidence 999888763 2467999999743333
No 96
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=54.20 E-value=55 Score=33.07 Aligned_cols=42 Identities=31% Similarity=0.297 Sum_probs=32.0
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhh
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSR 194 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfAr 194 (451)
.+-+.++++|||||+.-+. .|.+ ...+|+--||-=--||+.-
T Consensus 90 ~~Id~Li~IGGdgs~~~a~-~L~e------~~~i~vigiPkTIDNDl~~ 131 (301)
T TIGR02482 90 LGIEGLVVIGGDGSYTGAQ-KLYE------EGGIPVIGLPGTIDNDIPG 131 (301)
T ss_pred cCCCEEEEeCCchHHHHHH-HHHH------hhCCCEEeecccccCCCcC
Confidence 4667999999999987553 3332 1357888999999999983
No 97
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=54.17 E-value=32 Score=36.89 Aligned_cols=51 Identities=33% Similarity=0.416 Sum_probs=35.7
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchh---hhcCC
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfA---rsLg~ 198 (451)
.+-+.++++|||||..-+..-...... +...+++.-||-==-||+. +|+|.
T Consensus 175 ~~I~~L~vIGGdgT~~~A~~L~ee~~~--~g~~I~VIGIPKTIDNDI~~td~S~GF 228 (459)
T PTZ00286 175 HGINILFTLGGDGTHRGALAIYKELRR--RKLNISVVGIPKTIDNDIPIIDESFGF 228 (459)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHH--hCCCceEEEeccccCCCCCCcccCcCc
Confidence 456789999999999755332221111 1245899999999999998 66666
No 98
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=53.92 E-value=36 Score=34.78 Aligned_cols=87 Identities=11% Similarity=0.098 Sum_probs=49.8
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEE-eecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLS-EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~-~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
++++||.-+.+- ....+++...|....+ +.+. ...+.. .......+++++.+. + +.|.||++|| |
T Consensus 24 ~~~livtd~~~~----~~~~~~v~~~l~~~~i~~~~~~~~~~~~--~pt~~~v~~~~~~~~----~--~~d~IIaIGG-G 90 (348)
T cd08175 24 KKALIVADENTY----AAAGKKVEALLKRAGVVVLLIVLPAGDL--IADEKAVGRVLKELE----R--DTDLIIAVGS-G 90 (348)
T ss_pred CcEEEEECCcHH----HHHHHHHHHHHHHCCCeeEEeecCCCcc--cCCHHHHHHHHHHhh----c--cCCEEEEECC-c
Confidence 577777755432 2224667777765432 2211 111210 012233455554432 2 6689999999 8
Q ss_pred hHHHHHHHhhhcccCCCCCCCcEEEecC
Q 013013 159 TVGWVLGSVGELNKQGREPVPPVAIIPL 186 (451)
Q Consensus 159 Tv~~Vln~L~~~~~~~~~~~~plgiIPl 186 (451)
++..+...+.-. ..+|+-.||.
T Consensus 91 s~~D~aK~vA~~------~~~p~i~IPT 112 (348)
T cd08175 91 TINDITKYVSYK------TGIPYISVPT 112 (348)
T ss_pred HHHHHHHHHHHh------cCCCEEEecC
Confidence 888888887642 4679999997
No 99
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=53.40 E-value=3 Score=37.67 Aligned_cols=16 Identities=44% Similarity=0.663 Sum_probs=12.3
Q ss_pred EEEcCchhHHHHHHHh
Q 013013 152 VVAGGDGTVGWVLGSV 167 (451)
Q Consensus 152 vv~GGDGTv~~Vln~L 167 (451)
=-.|||||++|+-+-=
T Consensus 129 RgdGGDGT~hW~Yd~Q 144 (180)
T PLN00180 129 RGDGGDGTGHWVYERQ 144 (180)
T ss_pred cccCCCCceeeEeehH
Confidence 3469999999986543
No 100
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=52.50 E-value=59 Score=33.54 Aligned_cols=96 Identities=16% Similarity=0.249 Sum_probs=51.8
Q ss_pred CCCeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCC-cEEEEEcC
Q 013013 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQK-MRIVVAGG 156 (451)
Q Consensus 79 ~~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~-~~Ivv~GG 156 (451)
..++++||..+..-. ...+++.+.|..... +...+....+ ........+++++.+.+. ..... +.||++||
T Consensus 25 ~~~~~lvVtd~~v~~----~~~~~v~~~l~~~g~~~~~~v~~~~e-~~~s~~~v~~~~~~l~~~--~~~r~~d~IVaiGG 97 (354)
T cd08199 25 GSGRRFVVVDQNVDK----LYGKKLREYFAHHNIPLTILVLRAGE-AAKTMDTVLKIVDALDAF--GISRRREPVLAIGG 97 (354)
T ss_pred CCCeEEEEECccHHH----HHHHHHHHHHHhcCCceEEEEeCCCC-CCCCHHHHHHHHHHHHHc--CCCCCCCEEEEECC
Confidence 357788888775532 234566666654321 2211111111 111224445554433211 12223 78888887
Q ss_pred chhHHHHHHHhhhcccCCCCCCCcEEEecC
Q 013013 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (451)
Q Consensus 157 DGTv~~Vln~L~~~~~~~~~~~~plgiIPl 186 (451)
|++..++..+.... ...+|+..||.
T Consensus 98 -G~v~D~ak~~A~~~----~rg~p~i~VPT 122 (354)
T cd08199 98 -GVLTDVAGLAASLY----RRGTPYVRIPT 122 (354)
T ss_pred -cHHHHHHHHHHHHh----cCCCCEEEEcC
Confidence 89998888876432 24689999998
No 101
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=51.23 E-value=93 Score=32.22 Aligned_cols=102 Identities=22% Similarity=0.291 Sum_probs=51.6
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEE-EeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl-~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (451)
.++++|+..+..-. ....+++...|....+ +.+ ....+.+ .....++.++.+ + ..+.|.||++||
T Consensus 28 ~~~~livt~~~~~~---~~~~~~v~~~L~~~~~~~~~~~~v~~~p----~~~~v~~~~~~~----~-~~~~d~IIaiGG- 94 (377)
T cd08188 28 AKKVLLVSDPGVIK---AGWVDRVIESLEEAGLEYVVFSDVSPNP----RDEEVMAGAELY----L-ENGCDVIIAVGG- 94 (377)
T ss_pred CCeEEEEeCcchhh---CccHHHHHHHHHHcCCeEEEeCCCCCCC----CHHHHHHHHHHH----H-hcCCCEEEEeCC-
Confidence 36777776643321 1245566666654321 211 1122221 112233333332 2 246789999998
Q ss_pred hhHHHHHHHhh---hcc-------c--CCCCCCCcEEEecC--CCCcchhh
Q 013013 158 GTVGWVLGSVG---ELN-------K--QGREPVPPVAIIPL--GTGNDLSR 194 (451)
Q Consensus 158 GTv~~Vln~L~---~~~-------~--~~~~~~~plgiIPl--GTgNDfAr 194 (451)
|++..+.-.+. ... . ....+.+|+..||. |||-..++
T Consensus 95 GsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~gTgSE~t~ 145 (377)
T cd08188 95 GSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTAGSGADVSQ 145 (377)
T ss_pred chHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCccccccCC
Confidence 77776664331 100 0 00123578999998 88866655
No 102
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=50.30 E-value=79 Score=28.89 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=49.3
Q ss_pred hHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhHHHHHHHhhhcccCCC
Q 013013 97 PELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGELNKQGR 175 (451)
Q Consensus 97 ~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~ 175 (451)
....++....|....+ ||+.+...+. .+..+.++++++.+ ..-...|.++|+.+-+.-++.++.
T Consensus 11 ~~~~~~a~~~L~~~gi~~dv~V~SaHR----tp~~~~~~~~~a~~----~g~~viIa~AG~aa~Lpgvva~~t------- 75 (156)
T TIGR01162 11 LPTMKKAADILEEFGIPYELRVVSAHR----TPELMLEYAKEAEE----RGIKVIIAGAGGAAHLPGMVAALT------- 75 (156)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECccc----CHHHHHHHHHHHHH----CCCeEEEEeCCccchhHHHHHhcc-------
Confidence 3456666666765444 8888765543 56777888876531 122345677889888888888775
Q ss_pred CCCCcEEEecCCCC
Q 013013 176 EPVPPVAIIPLGTG 189 (451)
Q Consensus 176 ~~~~plgiIPlGTg 189 (451)
..|+--+|.-++
T Consensus 76 --~~PVIgvP~~~~ 87 (156)
T TIGR01162 76 --PLPVIGVPVPSK 87 (156)
T ss_pred --CCCEEEecCCcc
Confidence 356666777554
No 103
>PLN02834 3-dehydroquinate synthase
Probab=49.87 E-value=1e+02 Score=32.80 Aligned_cols=97 Identities=15% Similarity=0.150 Sum_probs=51.7
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEE-eecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLS-EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~-~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (451)
.++++||.++.... .+.+.+...|..... +.+. ...|..........++++++.+.+ ...+..+.||++||
T Consensus 100 g~rvlIVtD~~v~~----~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~--~~~dr~~~VIAiGG- 172 (433)
T PLN02834 100 GKRVLVVTNETVAP----LYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALE--SRLDRRCTFVALGG- 172 (433)
T ss_pred CCEEEEEECccHHH----HHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHh--cCCCcCcEEEEECC-
Confidence 37888888765542 266677777765321 1211 111111011122334444433221 01233457888877
Q ss_pred hhHHHHHHHhhhcccCCCCCCCcEEEecCC
Q 013013 158 GTVGWVLGSVGELNKQGREPVPPVAIIPLG 187 (451)
Q Consensus 158 GTv~~Vln~L~~~~~~~~~~~~plgiIPlG 187 (451)
|++..+...+.... ...+|+..||.-
T Consensus 173 Gsv~D~ak~~A~~y----~rgiplI~VPTT 198 (433)
T PLN02834 173 GVIGDMCGFAAASY----QRGVNFVQIPTT 198 (433)
T ss_pred hHHHHHHHHHHHHh----cCCCCEEEECCc
Confidence 89998887664322 246899999983
No 104
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=48.44 E-value=4.2 Score=34.99 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=28.3
Q ss_pred eeeehhccCcce-eEecccccccccccccchhhh
Q 013013 16 MIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (451)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~ 48 (451)
.++..+..|..| |||..|..|+-.++.+||...
T Consensus 65 ~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~ 98 (133)
T PF00782_consen 65 FIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKK 98 (133)
T ss_dssp HHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHH
T ss_pred hhhhhhcccceeEEEeCCCcccchHHHHHHHHHH
Confidence 345667778888 999999999999999999875
No 105
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=48.09 E-value=83 Score=32.05 Aligned_cols=40 Identities=28% Similarity=0.320 Sum_probs=32.2
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchh
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfA 193 (451)
.+-+.++++|||||+.-+. .|.+ ..+|+--||-==-||+.
T Consensus 91 ~~Id~Li~IGGdgs~~~a~-~L~e-------~~i~vigiPkTIDNDi~ 130 (317)
T cd00763 91 HGIDALVVIGGDGSYMGAM-RLTE-------HGFPCVGLPGTIDNDIP 130 (317)
T ss_pred cCCCEEEEECCchHHHHHH-HHHH-------cCCCEEEecccccCCCC
Confidence 4667999999999987664 3443 35899999999999998
No 106
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=47.77 E-value=85 Score=32.07 Aligned_cols=45 Identities=31% Similarity=0.525 Sum_probs=33.8
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchh---hhcCC
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfA---rsLg~ 198 (451)
.+-+.+|++|||||+.-+ +.|.+ ..+++--||.==-||+. .++|.
T Consensus 93 ~~Id~LivIGGdgS~~~a-~~L~~-------~gi~vigiPkTIDNDl~gtd~tiGf 140 (324)
T TIGR02483 93 LGLDALIAIGGDGTLGIA-RRLAD-------KGLPVVGVPKTIDNDLEATDYTFGF 140 (324)
T ss_pred cCCCEEEEECCchHHHHH-HHHHh-------cCCCEEeeccccCCCCcCCccCcCH
Confidence 456799999999999644 34543 34888889988899997 34554
No 107
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=47.13 E-value=43 Score=35.74 Aligned_cols=51 Identities=31% Similarity=0.430 Sum_probs=34.4
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchh---hhcCC
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfA---rsLg~ 198 (451)
.+-+.++++|||||+.-...--..... +...+++.-||-==-||+. +|+|.
T Consensus 171 ~~I~~L~vIGGdgT~~gA~~l~ee~~~--~g~~I~VIGIPKTIDNDi~~td~S~GF 224 (443)
T PRK06830 171 MNINILFVIGGDGTLRGASAIAEEIER--RGLKISVIGIPKTIDNDINFIQKSFGF 224 (443)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHH--hCCCceEEEeccccCCCCcCcccCCCH
Confidence 456789999999999755432211111 1245888899988899997 55555
No 108
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=45.69 E-value=86 Score=32.18 Aligned_cols=46 Identities=24% Similarity=0.140 Sum_probs=31.7
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchh
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfA 193 (451)
.+-+.++++|||||+.-+..--....+ ....+++--||-==-||+.
T Consensus 91 ~~I~~Lv~IGGd~s~~~a~~L~e~~~~--~~~~i~vigiPkTIDNDl~ 136 (338)
T cd00363 91 HGIDALVVIGGDGSYTGADLLTEEWPS--KYQGFNVIGLPGTIDNDIK 136 (338)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHh--cCCCccEEEeeecccCCCc
Confidence 456789999999999755322211111 1356899999976799998
No 109
>PRK10586 putative oxidoreductase; Provisional
Probab=45.66 E-value=1.4e+02 Score=30.91 Aligned_cols=91 Identities=14% Similarity=0.105 Sum_probs=49.3
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhH
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv 160 (451)
++++||.-+.+ .......+...|.... +.+...... . .....+++++.. ..+.|.||.+|| |++
T Consensus 35 ~~~lvv~g~~~----~~~~~~~~~~~l~~~~-~~~~~~~g~--~--~~~~v~~l~~~~------~~~~d~iiavGG-Gs~ 98 (362)
T PRK10586 35 SRAVWIYGERA----IAAAQPYLPPAFELPG-AKHILFRGH--C--SESDVAQLAAAS------GDDRQVVIGVGG-GAL 98 (362)
T ss_pred CeEEEEEChHH----HHHHHHHHHHHHHHcC-CeEEEeCCC--C--CHHHHHHHHHHh------ccCCCEEEEecC-cHH
Confidence 56777754332 2233355556665432 233221111 0 123345555432 134578888888 777
Q ss_pred HHHHHHhhhcccCCCCCCCcEEEecC--CCCcchh
Q 013013 161 GWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLS 193 (451)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~plgiIPl--GTgNDfA 193 (451)
-.+.-.+... ..+|+..||. |||--.+
T Consensus 99 iD~aK~~a~~------~~~p~i~vPT~a~t~s~~s 127 (362)
T PRK10586 99 LDTAKALARR------LGLPFVAIPTIAATCAAWT 127 (362)
T ss_pred HHHHHHHHhh------cCCCEEEEeCCcccccccc
Confidence 7777777542 4689999998 4544333
No 110
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=45.39 E-value=18 Score=35.52 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=16.2
Q ss_pred CCCCCeEEEEEcCCCCCCCh
Q 013013 77 QPPEAPMVVFINSRSGGRHG 96 (451)
Q Consensus 77 ~~~~~~~lVivNP~SG~~~g 96 (451)
..+..+.+|||||.+|-|.+
T Consensus 27 ~~p~~~f~vIiNP~sGPG~~ 46 (253)
T PF12138_consen 27 AHPSVPFTVIINPNSGPGSA 46 (253)
T ss_pred cCCCCcEEEEEcCCCCCCCC
Confidence 35677799999999998844
No 111
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=45.25 E-value=1.1e+02 Score=32.16 Aligned_cols=102 Identities=16% Similarity=0.233 Sum_probs=51.2
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEE-EeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl-~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
++++|+.-+..-. ....+++...|....+ +.+ ....|.. ......+.++.+ + ..+.|.||++|| |
T Consensus 24 ~~vlivt~~~~~~---~g~~~~v~~~L~~~gi~~~~f~~v~~~p----~~~~v~~~~~~~----~-~~~~D~IIaiGG-G 90 (414)
T cd08190 24 RRVCLVTDPNLAQ---LPPVKVVLDSLEAAGINFEVYDDVRVEP----TDESFKDAIAFA----K-KGQFDAFVAVGG-G 90 (414)
T ss_pred CeEEEEECcchhh---cchHHHHHHHHHHcCCcEEEeCCCCCCc----CHHHHHHHHHHH----H-hcCCCEEEEeCC-c
Confidence 6778887654322 1245666666654332 221 1222222 112334444332 1 245689999999 6
Q ss_pred hHHHHHHHhh---hcc------------c---CCCCCCCcEEEecC--CCCcchhhh
Q 013013 159 TVGWVLGSVG---ELN------------K---QGREPVPPVAIIPL--GTGNDLSRS 195 (451)
Q Consensus 159 Tv~~Vln~L~---~~~------------~---~~~~~~~plgiIPl--GTgNDfArs 195 (451)
++..+.-.+. ... . ......+|+..||. |||-...+.
T Consensus 91 SviD~AKaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagTGSE~t~~ 147 (414)
T cd08190 91 SVIDTAKAANLYASHPDADFLDYVNAPIGKGKPPPGPLKPLIAIPTTAGTGSETTGV 147 (414)
T ss_pred cHHHHHHHHHHHHhCCCCCHHHHHhhccccccccCCCCCCEEEeCCCCchhhhhccc
Confidence 6665543331 000 0 00113468999997 677655543
No 112
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=44.79 E-value=1e+02 Score=33.82 Aligned_cols=43 Identities=23% Similarity=0.051 Sum_probs=30.7
Q ss_pred CCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecC--CCCcchhh
Q 013013 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLSR 194 (451)
Q Consensus 147 ~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPl--GTgNDfAr 194 (451)
..+.||++|| |++..++..+.... ...+|+..||. -..+|-+-
T Consensus 269 r~D~IIAIGG-Gsv~D~AKfvA~~y----~rGi~~i~vPTTllA~vDss~ 313 (542)
T PRK14021 269 RSDAIVGLGG-GAATDLAGFVAATW----MRGIRYVNCPTSLLAMVDAST 313 (542)
T ss_pred CCcEEEEEcC-hHHHHHHHHHHHHH----HcCCCEEEeCChHHhhhcccc
Confidence 5678888888 99999988886432 25689999998 34444443
No 113
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=43.54 E-value=5.9 Score=34.38 Aligned_cols=32 Identities=19% Similarity=0.065 Sum_probs=26.9
Q ss_pred eeehhccCcce-eEecccccccccccccchhhh
Q 013013 17 IDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (451)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~ 48 (451)
++..+..|..| |||..|..|+-.++.+||...
T Consensus 71 i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~ 103 (138)
T smart00195 71 IEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKY 103 (138)
T ss_pred HHHHhcCCCeEEEECCCCCchHHHHHHHHHHHH
Confidence 34566778888 999999999999999998764
No 114
>PRK03202 6-phosphofructokinase; Provisional
Probab=43.42 E-value=97 Score=31.59 Aligned_cols=40 Identities=30% Similarity=0.292 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchh
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfA 193 (451)
.+-+.++++|||||+.-+. .|.+ ..+++--||-==-||+.
T Consensus 92 ~~Id~Li~IGGd~s~~~a~-~L~e-------~~i~vigiPkTIDNDl~ 131 (320)
T PRK03202 92 LGIDALVVIGGDGSYMGAK-RLTE-------HGIPVIGLPGTIDNDIA 131 (320)
T ss_pred cCCCEEEEeCChHHHHHHH-HHHh-------cCCcEEEecccccCCCC
Confidence 4667999999999998654 3443 36888899998899998
No 115
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=42.73 E-value=6.2 Score=36.56 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=28.5
Q ss_pred eeeehhccCcce-eEecccccccccccccchhhh
Q 013013 16 MIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (451)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~ 48 (451)
.++...+-|..| |||..|-+|+-.++.+||...
T Consensus 97 ~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~ 130 (180)
T COG2453 97 FIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLY 130 (180)
T ss_pred HHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHH
Confidence 446777788777 999999999999999999875
No 116
>PF12219 End_tail_spike: Catalytic domain of bacteriophage endosialidase; InterPro: IPR024430 This entry represents the C-terminal domain of endosialidases which is approximately 160 amino acids in length. There are two conserved sequence motifs: VSR and YGA. The endosialidase protein forms homotrimeric molecules and this domain complexes into a tail-spike stalk. The stalk region folds in a triple beta-helix that is interrupted by a small triple beta-prism domain. The tail-spike is a multifunctional protein device used by the phage to fulfil the following functions: (i) to adsorb to the bacterial polySia capsule (ii) to de-polymerise the capsule to gain access to the outer bacterial membrane, and finally (iii) to mediate tight adhesion to the membrane, a prerequisite for the initiation of the infection cycle [].; PDB: 3JU4_A 3GW6_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=42.50 E-value=14 Score=32.88 Aligned_cols=13 Identities=46% Similarity=0.986 Sum_probs=10.7
Q ss_pred cEEEEEcCchhHH
Q 013013 149 MRIVVAGGDGTVG 161 (451)
Q Consensus 149 ~~Ivv~GGDGTv~ 161 (451)
-|+|+||||||-+
T Consensus 86 QRlIvsGGegtss 98 (160)
T PF12219_consen 86 QRLIVSGGEGTSS 98 (160)
T ss_dssp -EEEEESSSSSSG
T ss_pred cEEEEeCCCCccc
Confidence 4999999999854
No 117
>PLN02564 6-phosphofructokinase
Probab=40.83 E-value=1.1e+02 Score=33.22 Aligned_cols=51 Identities=33% Similarity=0.442 Sum_probs=33.4
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchh---hhcCC
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfA---rsLg~ 198 (451)
.+-+.++++|||||+.-...-.....+ ...++++.-||-==-||+. +++|.
T Consensus 175 ~~Id~LivIGGDGS~~gA~~L~e~~~~--~g~~i~VIGIPKTIDNDI~~tD~T~GF 228 (484)
T PLN02564 175 RGINQVYIIGGDGTQKGASVIYEEIRR--RGLKVAVAGIPKTIDNDIPVIDKSFGF 228 (484)
T ss_pred hCCCEEEEECCchHHHHHHHHHHHHHH--cCCCceEEEecccccCCCcCcccCCCH
Confidence 456789999999999755332221111 0234568888988899998 44554
No 118
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=40.32 E-value=1.1e+02 Score=35.20 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=33.2
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchh
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfA 193 (451)
.+-+.++++|||||..-+. .|.+....-....+|+-.||.==-||+.
T Consensus 477 ~~Id~LivIGGdgs~~~a~-~L~~~~~~y~~~~i~vVgIPkTIDNDv~ 523 (762)
T cd00764 477 YGIDGLIIVGGFEAYKGLL-QLREAREQYEEFCIPMVLIPATVSNNVP 523 (762)
T ss_pred cCCCEEEEECChhHHHHHH-HHHHHHhhCCCCCccEEEecccccCCCC
Confidence 4667999999999998654 3332111001246899999999999997
No 119
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=39.61 E-value=1.1e+02 Score=32.22 Aligned_cols=46 Identities=20% Similarity=0.087 Sum_probs=31.8
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchh
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfA 193 (451)
.+-+.++++|||||..-...-....... ...+++--||-==-||+.
T Consensus 111 ~~Id~Li~IGGdgS~~~a~~L~~~~~~~--g~~i~vvgIPkTIDNDl~ 156 (403)
T PRK06555 111 DGVDILHTIGGDDTNTTAADLAAYLAEN--GYDLTVVGLPKTIDNDVV 156 (403)
T ss_pred cCCCEEEEECChhHHHHHHHHHHHHHHh--CCCceEEEeeeeeeCCCC
Confidence 4667899999999987553221111100 236899999999999996
No 120
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=39.08 E-value=1.5e+02 Score=34.49 Aligned_cols=74 Identities=16% Similarity=0.203 Sum_probs=40.1
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhc--ccCeeEEE---eecccchhccchhHHHHHHhccchhhhccCCCcEEEEE
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMG--KEQVFDLS---EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVA 154 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~--~~~~~dl~---~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~ 154 (451)
.++++||..+..-. ..+.+++...|. ... +++. ...|.. .....+++++.+. ..+.|.||++
T Consensus 480 ~~~~lvVtd~~~~~---~g~~~~v~~~L~~~~~~-i~~~~~~~v~~np----~~~~v~~~~~~~~-----~~~~D~IIai 546 (862)
T PRK13805 480 KKRAFIVTDRFMVE---LGYVDKVTDVLKKRENG-VEYEVFSEVEPDP----TLSTVRKGAELMR-----SFKPDTIIAL 546 (862)
T ss_pred CCEEEEEECcchhh---cchHHHHHHHHhcccCC-CeEEEeCCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEe
Confidence 46788887654422 125667777776 322 2222 222332 1233444444332 2456899999
Q ss_pred cCchhHHHHHHHh
Q 013013 155 GGDGTVGWVLGSV 167 (451)
Q Consensus 155 GGDGTv~~Vln~L 167 (451)
|| |++..+.-.+
T Consensus 547 GG-GSviD~AK~i 558 (862)
T PRK13805 547 GG-GSPMDAAKIM 558 (862)
T ss_pred CC-chHHHHHHHH
Confidence 98 7777766555
No 121
>PRK14071 6-phosphofructokinase; Provisional
Probab=37.60 E-value=1.3e+02 Score=31.18 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=34.0
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchh---hhcCC
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfA---rsLg~ 198 (451)
.+-+.++++|||||+. .+..|.+ ...+++--||-==-||+. +++|.
T Consensus 106 ~~Id~Li~IGGdgS~~-~a~~L~~------~~~i~vIgiPkTIDNDl~~td~t~Gf 154 (360)
T PRK14071 106 LGLDALIGIGGDGSLA-ILRRLAQ------QGGINLVGIPKTIDNDVGATEVSIGF 154 (360)
T ss_pred cCCCEEEEECChhHHH-HHHHHHH------hcCCcEEEecccccCCCcCcccCcCh
Confidence 4667999999999986 3444543 136889999988899997 45555
No 122
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=37.48 E-value=2.2e+02 Score=29.34 Aligned_cols=91 Identities=15% Similarity=0.224 Sum_probs=48.1
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhH
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv 160 (451)
++++||..+.-.. -..+.+.+.|.....+.+....+.. ....++++.+.+.+. .....+.||++|| |++
T Consensus 20 ~r~lIVtD~~v~~----l~~~~l~~~L~~~~~~~~~~~e~~k----~l~~v~~~~~~~~~~--~~~r~d~iIaiGG-Gsv 88 (346)
T cd08196 20 ENDVFIVDANVAE----LYRDRLDLPLDAAPVIAIDATEENK----SLEAVSSVIESLRQN--GARRNTHLVAIGG-GII 88 (346)
T ss_pred CeEEEEECccHHH----HHHHHHHHHhcCCeEEEeCCCCCCC----CHHHHHHHHHHHHHc--CCCCCcEEEEECC-hHH
Confidence 6788888875532 2556677766432122222222221 223444444433210 1233467888887 888
Q ss_pred HHHHHHhhhcccCCCCCCCcEEEecC
Q 013013 161 GWVLGSVGELNKQGREPVPPVAIIPL 186 (451)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~plgiIPl 186 (451)
..++..+.... ....|+-.||.
T Consensus 89 ~D~ak~vA~~~----~rgi~~i~iPT 110 (346)
T cd08196 89 QDVTTFVASIY----MRGVSWSFVPT 110 (346)
T ss_pred HHHHHHHHHHH----HcCCCeEEecc
Confidence 88887775432 13456666775
No 123
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=35.87 E-value=2e+02 Score=29.93 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=54.2
Q ss_pred CCCCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEE--EeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEc
Q 013013 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDL--SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAG 155 (451)
Q Consensus 78 ~~~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl--~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~G 155 (451)
....+++||.|+.=.. -..+++...|.... ++. .+..+.| ..+...+..++-....+ ......+.||+.|
T Consensus 31 ~~~~k~~ivtd~~v~~----~y~~~~~~~l~~~g-~~v~~~~lp~GE-~~Ksl~~~~~i~~~ll~--~~~~R~s~iialG 102 (360)
T COG0337 31 LAGRKVAIVTDETVAP----LYLEKLLATLEAAG-VEVDSIVLPDGE-EYKSLETLEKIYDALLE--AGLDRKSTLIALG 102 (360)
T ss_pred ccCCeEEEEECchhHH----HHHHHHHHHHHhcC-CeeeEEEeCCCc-ccccHHHHHHHHHHHHH--cCCCCCcEEEEEC
Confidence 3445899999976543 25667777776543 333 2333333 33344444444333221 1234556788888
Q ss_pred CchhHHHHHHHhhhcccCCCCCCCcEEEecC
Q 013013 156 GDGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (451)
Q Consensus 156 GDGTv~~Vln~L~~~~~~~~~~~~plgiIPl 186 (451)
| |+|+.++.=..... -..+++--||.
T Consensus 103 G-GvigDlaGF~Aaty----~RGv~fiqiPT 128 (360)
T COG0337 103 G-GVIGDLAGFAAATY----MRGVRFIQIPT 128 (360)
T ss_pred C-hHHHHHHHHHHHHH----HcCCCeEeccc
Confidence 8 99988776654432 14566777774
No 124
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=35.73 E-value=2.2e+02 Score=31.46 Aligned_cols=89 Identities=18% Similarity=0.205 Sum_probs=58.0
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
...+.||+=..|- ....++....|....+ |++.+...+. .+..+.++++++.+ ..-...|.++|+.+
T Consensus 410 ~~~v~i~~gs~sd----~~~~~~~~~~l~~~g~~~~~~v~sahr----~~~~~~~~~~~~~~----~~~~v~i~~ag~~~ 477 (577)
T PLN02948 410 TPLVGIIMGSDSD----LPTMKDAAEILDSFGVPYEVTIVSAHR----TPERMFSYARSAHS----RGLQVIIAGAGGAA 477 (577)
T ss_pred CCeEEEEECchhh----HHHHHHHHHHHHHcCCCeEEEEECCcc----CHHHHHHHHHHHHH----CCCCEEEEEcCccc
Confidence 3346666643333 3466777777776554 7877765553 56777888776541 12234678889999
Q ss_pred hHHHHHHHhhhcccCCCCCCCcEEEecCCCC
Q 013013 159 TVGWVLGSVGELNKQGREPVPPVAIIPLGTG 189 (451)
Q Consensus 159 Tv~~Vln~L~~~~~~~~~~~~plgiIPlGTg 189 (451)
.+.-|+.++.. .||--+|..+|
T Consensus 478 ~l~~~~a~~t~---------~pvi~vp~~~~ 499 (577)
T PLN02948 478 HLPGMVASMTP---------LPVIGVPVKTS 499 (577)
T ss_pred cchHHHhhccC---------CCEEEcCCCCC
Confidence 99999988853 56666777655
No 125
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=32.96 E-value=3.5e+02 Score=26.22 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCchhH----HHHHHHhhhcccCCCCCCCcEEEecC-CCCcchhhhcCC
Q 013013 146 RQKMRIVVAGGDGTV----GWVLGSVGELNKQGREPVPPVAIIPL-GTGNDLSRSFGW 198 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv----~~Vln~L~~~~~~~~~~~~plgiIPl-GTgNDfArsLg~ 198 (451)
.+.+.+++..||-++ .+++..|.+. ....++=+||. -+....|-.+|.
T Consensus 91 ~g~~v~~l~~GDp~~ys~~~~l~~~l~~~-----~~~~~veivPGIss~~a~aa~~g~ 143 (238)
T PRK05948 91 QGEDVAFACEGDVSFYSTFTYLAQTLQEL-----YPQVAIQTIPGVCSPLAAAAALGI 143 (238)
T ss_pred cCCeEEEEeCCChHHHHHHHHHHHHHHhc-----CCCCCEEEECChhHHHHHHHHhCC
Confidence 345689999999555 4555555431 13578888986 344445555555
No 126
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=32.77 E-value=11 Score=32.33 Aligned_cols=32 Identities=22% Similarity=0.102 Sum_probs=25.9
Q ss_pred eeehhccCcce-eEecccccccccccccchhhh
Q 013013 17 IDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (451)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~ 48 (451)
++..+..+..+ |||..|..|+..++.+|+...
T Consensus 74 i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~ 106 (139)
T cd00127 74 IDDAREKGGKVLVHCLAGVSRSATLVIAYLMKT 106 (139)
T ss_pred HHHHHhcCCcEEEECCCCCchhHHHHHHHHHHH
Confidence 34455567788 899999999999999998864
No 127
>PRK14072 6-phosphofructokinase; Provisional
Probab=32.63 E-value=1.7e+02 Score=30.94 Aligned_cols=46 Identities=24% Similarity=0.223 Sum_probs=31.1
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchh
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfA 193 (451)
.+-+.+|++|||||+.-+.. |.+.-.. ...++++--||-==-||+.
T Consensus 102 ~~Id~LivIGGdgS~~~a~~-L~e~~~~-~g~~i~vIgIPkTIDNDl~ 147 (416)
T PRK14072 102 HDIGYFFYNGGNDSMDTALK-VSQLAKK-MGYPIRCIGIPKTIDNDLP 147 (416)
T ss_pred cCCCEEEEECChHHHHHHHH-HHHHHHH-hCCCceEEEeeecccCCCC
Confidence 45679999999999975532 2221000 0245889999977799998
No 128
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=32.08 E-value=2e+02 Score=29.77 Aligned_cols=41 Identities=34% Similarity=0.372 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchh
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfA 193 (451)
.+-+.+|++|||||..-.. -|.+ .-..++-=||-==-||++
T Consensus 93 ~gId~LvvIGGDgS~~gA~-~Lae------~~~i~vVGvPkTIDNDi~ 133 (347)
T COG0205 93 LGIDALVVIGGDGSYTGAA-LLAE------EGGIPVVGVPKTIDNDIS 133 (347)
T ss_pred cCCCEEEEECCCChHHHHH-HHHH------hcCCcEEecCCCccCCCc
Confidence 4567899999999987553 2332 123788888888899998
No 129
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=28.87 E-value=22 Score=32.52 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=28.1
Q ss_pred eeehhccCcce-eEecccccccccccccchhhh
Q 013013 17 IDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (451)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~ 48 (451)
||+.-.-|..| |||--||.||..+...||...
T Consensus 102 i~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~ 134 (183)
T KOG1719|consen 102 IHKNASLGKTVYVHCKAGRTRSATVVACYLMQH 134 (183)
T ss_pred HHhccccCCeEEEEecCCCccchhhhhhhhhhh
Confidence 45667788999 999999999999999999864
No 130
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=28.20 E-value=1.6e+02 Score=33.72 Aligned_cols=48 Identities=21% Similarity=0.215 Sum_probs=30.8
Q ss_pred CCCcEEEEEcCchhHHHHH----------HHhhhccc-----CCCCCCCcEEEecCCCCcchh
Q 013013 146 RQKMRIVVAGGDGTVGWVL----------GSVGELNK-----QGREPVPPVAIIPLGTGNDLS 193 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vl----------n~L~~~~~-----~~~~~~~plgiIPlGTgNDfA 193 (451)
.+-+.+|++|||||+.-.. ..|.+... ......+++.-||-==-||+.
T Consensus 93 ~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~ 155 (745)
T TIGR02478 93 RGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMC 155 (745)
T ss_pred hCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCC
Confidence 4667999999999986543 22221100 011347889999944499998
No 131
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=27.56 E-value=5.2e+02 Score=25.18 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=19.3
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhc
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMG 108 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~ 108 (451)
+|+..|+|+|.|.||...+ -.|...|.
T Consensus 1 M~vItf~s~KGGaGKTT~~-~~LAs~la 27 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAA-MALASELA 27 (231)
T ss_pred CCeEEEecCCCCCcHHHHH-HHHHHHHH
Confidence 5789999999999986544 34444443
No 132
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=27.44 E-value=1.7e+02 Score=33.57 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCchhHHHHH----------HHhhhccc-----CCCCCCCcEEEecCCCCcchh
Q 013013 146 RQKMRIVVAGGDGTVGWVL----------GSVGELNK-----QGREPVPPVAIIPLGTGNDLS 193 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vl----------n~L~~~~~-----~~~~~~~plgiIPlGTgNDfA 193 (451)
.+-+.+|++|||||+.-.. ..|.+... ......+++.-||-==-||++
T Consensus 96 ~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~ 158 (762)
T cd00764 96 RGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFC 158 (762)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCC
Confidence 4667999999999986543 22222110 011235788888887799998
No 133
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=27.29 E-value=1.3e+02 Score=33.25 Aligned_cols=50 Identities=26% Similarity=0.321 Sum_probs=34.0
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhh-cccCCCCCCCcEEEecCCCCcchh-----hhcCC
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGE-LNKQGREPVPPVAIIPLGTGNDLS-----RSFGW 198 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~-~~~~~~~~~~plgiIPlGTgNDfA-----rsLg~ 198 (451)
.+-+.+|++|||||..-+.- |.+ ... ....+++--||-==-||+. .++|.
T Consensus 163 ~~Id~LviIGGd~S~~~A~~-Lae~~~~--~~~~i~VIGIPkTIDNDl~~~~id~s~GF 218 (555)
T PRK07085 163 LKLDGLVIIGGDDSNTNAAI-LAEYFAK--HGCKTQVIGVPKTIDGDLKNEFIETSFGF 218 (555)
T ss_pred cCCCEEEEeCCchHHHHHHH-HHHHHHH--hCCCccEEEEeeeecCCCCCCcccccCCH
Confidence 35578999999999876542 222 110 1246889999988899997 45555
No 134
>PRK06756 flavodoxin; Provisional
Probab=25.52 E-value=4.5e+02 Score=22.84 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhccc
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKE 110 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~ 110 (451)
++++||+=. ..|+.+.+.+.+.+.+...
T Consensus 2 mkv~IiY~S--~tGnTe~vA~~ia~~l~~~ 29 (148)
T PRK06756 2 SKLVMIFAS--MSGNTEEMADHIAGVIRET 29 (148)
T ss_pred ceEEEEEEC--CCchHHHHHHHHHHHHhhc
Confidence 477888854 4456678888888887653
No 135
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=25.11 E-value=1.3e+02 Score=32.99 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=31.0
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhh-cccCCCCCCCcEEEecCCCCcchhh
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGE-LNKQGREPVPPVAIIPLGTGNDLSR 194 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~-~~~~~~~~~~plgiIPlGTgNDfAr 194 (451)
.+-+.+|++|||||..-+.- |.+ ... ...++++--||-==-||+..
T Consensus 160 ~~Id~LviIGGdgS~~~A~~-Lae~~~~--~g~~i~VIGIPkTIDNDl~~ 206 (539)
T TIGR02477 160 LKLDGLVIIGGDDSNTNAAL-LAEYFAK--HGLKTQVIGVPKTIDGDLKN 206 (539)
T ss_pred cCCCEEEEeCCchHHHHHHH-HHHHHHh--cCCCceEEEEeeeecCCCCC
Confidence 35578999999999875532 221 100 02458888889877999974
No 136
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=25.10 E-value=2.8e+02 Score=31.84 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=32.1
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchh
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfA 193 (451)
.+-+.++++|||||..-+..-......+ ....+|+-.||.==-||++
T Consensus 477 ~~Id~LivIGGdgs~~~a~~L~~~~~~~-~~~~i~vvgIPkTIDNDi~ 523 (745)
T TIGR02478 477 HKIDGLLIIGGFEAFEALLQLEQAREKY-PAFRIPMVVIPATISNNVP 523 (745)
T ss_pred cCCCEEEEeCChHHHHHHHHHHHHHhhC-CCCCccEEEecccccCCCC
Confidence 4567999999999987543222111000 1246899999999999998
No 137
>PLN02884 6-phosphofructokinase
Probab=25.03 E-value=2.8e+02 Score=29.34 Aligned_cols=51 Identities=29% Similarity=0.384 Sum_probs=33.7
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchh---hhcCC
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfA---rsLg~ 198 (451)
.+-+.++++|||||+.-+..--..... ....+++--||-==-||+. .++|.
T Consensus 142 ~~Id~LivIGGdgS~~~a~~L~~~~~~--~g~~i~vIGIPkTIDNDi~~tD~TiGF 195 (411)
T PLN02884 142 RGINMLFVLGGNGTHAGANAIHNECRK--RKMKVSVVGVPKTIDNDILLMDKTFGF 195 (411)
T ss_pred cCCCEEEEECCchHHHHHHHHHHHHHH--cCCCceEEeccccccCCCcCcccCCCH
Confidence 456799999999999754322111110 0235889999998899997 44554
No 138
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=25.01 E-value=2.3e+02 Score=29.34 Aligned_cols=68 Identities=15% Similarity=0.267 Sum_probs=44.7
Q ss_pred CCCCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 013013 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (451)
Q Consensus 78 ~~~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GG 156 (451)
+..+++++.+---|=++. .+++++...|...+++++.-+.|.+.++. ...+-+++++ .+-+-|+++||
T Consensus 27 ~~~~kVLi~YGGGSIKrn--GvydqV~~~Lkg~~~~E~~GVEPNP~~~T-v~kaV~i~ke--------e~idflLAVGG 94 (384)
T COG1979 27 PKDAKVLIVYGGGSIKKN--GVYDQVVEALKGIEVIEFGGVEPNPRLET-LMKAVEICKE--------ENIDFLLAVGG 94 (384)
T ss_pred cccCeEEEEecCcccccc--chHHHHHHHhcCceEEEecCCCCCchHHH-HHHHHHHHHH--------cCceEEEEecC
Confidence 444888888854433333 37888888888767788887778775432 2233444442 56678999998
No 139
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=24.75 E-value=1.5e+02 Score=33.09 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=33.7
Q ss_pred CCCcEEEEEcCchhHHHHH--HH-hhhcccCCCCCCCcEEEecCCCCcchh-----hhcCC
Q 013013 146 RQKMRIVVAGGDGTVGWVL--GS-VGELNKQGREPVPPVAIIPLGTGNDLS-----RSFGW 198 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vl--n~-L~~~~~~~~~~~~plgiIPlGTgNDfA-----rsLg~ 198 (451)
-+-+.+|++|||||..-+. .. +.+. ..++++--||-==-||+. .++|.
T Consensus 172 l~Id~LvvIGGddS~~~A~~Lae~~~~~-----~~~i~VIGIPKTIDNDL~~~~td~s~GF 227 (610)
T PLN03028 172 LKLDGLVIIGGVTSNTDAAQLAETFAEA-----KCKTKVVGVPVTLNGDLKNQFVETNVGF 227 (610)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHc-----CCCceEEEeceeeeCCCCCCCCCCCcCH
Confidence 3557899999999987553 22 2211 246888889987799997 56665
No 140
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=24.55 E-value=3.5e+02 Score=28.18 Aligned_cols=94 Identities=14% Similarity=0.083 Sum_probs=56.1
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEE-eecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLS-EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~-~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
++.+|+.-+.. ..-..+++...|...+ |... ...+.- ..+..+++++.+. ..+.+.||.+|| |+
T Consensus 31 ~~~lvv~g~~~----~~~~~~~~~~~l~~~g-~~~~~~~~~~a----~~~ev~~~~~~~~-----~~~~d~vIGVGG-Gk 95 (360)
T COG0371 31 SRALVVTGENT----YAIAGEKVEKSLKDEG-LVVHVVFVGEA----SEEEVERLAAEAG-----EDGADVVIGVGG-GK 95 (360)
T ss_pred CceEEEEChhH----HHHHHHHHHHHhcccC-cceeeeecCcc----CHHHHHHHHHHhc-----ccCCCEEEEecC-cH
Confidence 56666654333 2334567777777643 2222 221211 2244566655432 145678998888 88
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhh
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRS 195 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArs 195 (451)
+-.++-.+... .+.|+..+|.=..+|=.-|
T Consensus 96 ~iD~aK~~A~~------~~~pfIsvPT~AS~Da~~S 125 (360)
T COG0371 96 TIDTAKAAAYR------LGLPFISVPTIASTDAITS 125 (360)
T ss_pred HHHHHHHHHHH------cCCCEEEecCccccccccC
Confidence 88887777653 6789999999777775443
No 141
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=21.91 E-value=1.2e+02 Score=30.36 Aligned_cols=42 Identities=29% Similarity=0.307 Sum_probs=32.4
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhh
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSR 194 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfAr 194 (451)
.+-+.++++|||||+.-. ..|.+. ..+++-.||-==-||+.-
T Consensus 91 ~~Id~Li~IGG~gs~~~a-~~L~~~------~~i~vigiPkTIDNDi~g 132 (282)
T PF00365_consen 91 LGIDALIVIGGDGSMKGA-HKLSEE------FGIPVIGIPKTIDNDIPG 132 (282)
T ss_dssp TTESEEEEEESHHHHHHH-HHHHHH------HHSEEEEEEEETTSSCTT
T ss_pred hCCCEEEEecCCCHHHHH-HHHHhc------CceEEEEEeccccCCcCC
Confidence 456789999999997765 455532 238999999988999984
No 142
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=21.87 E-value=23 Score=34.65 Aligned_cols=30 Identities=7% Similarity=-0.172 Sum_probs=25.1
Q ss_pred eehhccCcce-eEecccccccccccccchhh
Q 013013 18 DSIRGCGLSG-MRIDKEDLRRKLSIPEYLRV 47 (451)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~ 47 (451)
+...+-|..| |||.-|.+|+-++++.||..
T Consensus 164 ~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~ 194 (241)
T PTZ00393 164 NNVIKNNRAVAVHCVAGLGRAPVLASIVLIE 194 (241)
T ss_pred HHHHhcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3445567777 99999999999999999975
No 143
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=21.58 E-value=30 Score=37.43 Aligned_cols=13 Identities=54% Similarity=0.682 Sum_probs=10.2
Q ss_pred cEEEEEcCchhHH
Q 013013 149 MRIVVAGGDGTVG 161 (451)
Q Consensus 149 ~~Ivv~GGDGTv~ 161 (451)
...+.+|-||+|.
T Consensus 466 Ky~~lagndg~v~ 478 (498)
T PLN02499 466 KYRVLAGNDGTVS 478 (498)
T ss_pred HHHHhcCCCcccc
Confidence 3677889999883
No 144
>PTZ00287 6-phosphofructokinase; Provisional
Probab=20.84 E-value=1.4e+02 Score=36.52 Aligned_cols=49 Identities=22% Similarity=0.187 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCchhHHHHH--HHhhhcccCCCCCCCcEEEecCCCCcchhh-----hcCC
Q 013013 146 RQKMRIVVAGGDGTVGWVL--GSVGELNKQGREPVPPVAIIPLGTGNDLSR-----SFGW 198 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vl--n~L~~~~~~~~~~~~plgiIPlGTgNDfAr-----sLg~ 198 (451)
.+-+.+|++|||||..-.. ....... ..+..+--||-==-||+.. ++|+
T Consensus 927 l~ID~LVvIGGDgS~t~A~~LaE~f~~~----gi~i~VIGVPkTIDNDL~~~~tD~TiGF 982 (1419)
T PTZ00287 927 LQLNGLVMPGSNVTITEAALLAEYFLEK----KIPTSVVGIPLTGSNNLIHELIETCVGF 982 (1419)
T ss_pred hCCCEEEEECCchHHHHHHHHHHHHHhc----CCCccEEEeCceeeCCCCCCCCcCCCCH
Confidence 3567899999999997543 2211100 1233477788777999986 6665
No 145
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=20.65 E-value=4.1e+02 Score=25.94 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCC
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLG 187 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlG 187 (451)
...+.+|..||-+|+.|++ ..+.|+-+||.-
T Consensus 249 ~~ad~vIs~~G~~t~~Ea~-----------~~g~P~l~ip~~ 279 (318)
T PF13528_consen 249 AAADLVISKGGYTTISEAL-----------ALGKPALVIPRP 279 (318)
T ss_pred HhCCEEEECCCHHHHHHHH-----------HcCCCEEEEeCC
Confidence 3456899999999999997 246789999984
No 146
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=20.35 E-value=81 Score=31.54 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=17.7
Q ss_pred CCCcEEEEEcCch-hHHHHHHHhhh
Q 013013 146 RQKMRIVVAGGDG-TVGWVLGSVGE 169 (451)
Q Consensus 146 ~~~~~Ivv~GGDG-Tv~~Vln~L~~ 169 (451)
.+...||+.+||| +.+.-++.|..
T Consensus 75 ~Pd~~VV~i~GDG~~f~ig~~eL~t 99 (279)
T PRK11866 75 NPKLTVIGYGGDGDGYGIGLGHLPH 99 (279)
T ss_pred CCCCcEEEEECChHHHHccHHHHHH
Confidence 3456899999999 57766666654
No 147
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=20.34 E-value=2.1e+02 Score=25.70 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=27.5
Q ss_pred hhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhcc
Q 013013 96 GPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELG 138 (451)
Q Consensus 96 g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~ 138 (451)
|..+.+.+.+.|... +|++....|.. ..|+..+..+++..
T Consensus 11 G~~lK~~l~~~L~~~-g~eV~D~G~~~--~dypd~a~~va~~V 50 (141)
T PRK12613 11 GNALKELIKSFLQEE-GYDIIDVTDIN--SDFIDNTLAVAKAV 50 (141)
T ss_pred hHHHHHHHHHHHHHC-CCEEEEcCCCC--CChHHHHHHHHHHH
Confidence 456888999988875 57887776633 35667676666543
Done!