Query 013013
Match_columns 451
No_of_seqs 226 out of 1671
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 20:35:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013013.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013013hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s40_A Diacylglycerol kinase; 100.0 1.4E-39 4.7E-44 324.5 24.3 260 79-443 7-274 (304)
2 2qv7_A Diacylglycerol kinase D 100.0 1.1E-35 3.7E-40 300.3 26.1 259 80-442 24-291 (337)
3 2bon_A Lipid kinase; DAG kinas 100.0 1.7E-35 5.9E-40 298.4 18.0 259 79-442 28-292 (332)
4 2an1_A Putative kinase; struct 98.6 1.4E-07 4.7E-12 92.6 11.7 122 80-231 5-130 (292)
5 1u0t_A Inorganic polyphosphate 98.6 1.5E-07 5.3E-12 93.3 9.6 128 80-231 4-142 (307)
6 1yt5_A Inorganic polyphosphate 98.5 1.2E-07 3.9E-12 91.9 7.9 106 81-231 1-107 (258)
7 2i2c_A Probable inorganic poly 98.4 1E-06 3.5E-11 85.9 10.5 104 81-231 1-104 (272)
8 3afo_A NADH kinase POS5; alpha 97.4 0.00051 1.8E-08 70.1 9.4 128 79-233 40-184 (388)
9 1z0s_A Probable inorganic poly 95.7 0.032 1.1E-06 54.2 9.1 93 81-215 30-122 (278)
10 3pfn_A NAD kinase; structural 95.4 0.16 5.4E-06 51.2 13.0 131 79-232 37-176 (365)
11 1o2d_A Alcohol dehydrogenase, 84.2 6.1 0.00021 39.3 11.0 101 81-193 41-157 (371)
12 3hl0_A Maleylacetate reductase 76.2 6.3 0.00022 39.1 7.9 85 80-186 34-119 (353)
13 3jzd_A Iron-containing alcohol 76.0 5.6 0.00019 39.6 7.5 86 80-186 36-121 (358)
14 4grd_A N5-CAIR mutase, phospho 73.4 32 0.0011 30.6 10.8 75 82-169 14-90 (173)
15 3bfj_A 1,3-propanediol oxidore 69.0 11 0.00037 37.7 7.7 102 80-193 33-151 (387)
16 1sg6_A Pentafunctional AROM po 68.6 6.4 0.00022 39.6 5.9 102 80-193 36-148 (393)
17 1u11_A PURE (N5-carboxyaminoim 67.4 44 0.0015 30.0 10.4 89 80-189 21-110 (182)
18 1xmp_A PURE, phosphoribosylami 66.7 25 0.00086 31.2 8.6 81 92-189 19-100 (170)
19 3okf_A 3-dehydroquinate syntha 66.2 22 0.00075 35.8 9.3 95 79-186 61-157 (390)
20 1rrm_A Lactaldehyde reductase; 66.0 7.9 0.00027 38.6 6.0 99 80-192 31-148 (386)
21 2gru_A 2-deoxy-scyllo-inosose 65.9 8.8 0.0003 38.2 6.3 95 80-186 34-128 (368)
22 3ox4_A Alcohol dehydrogenase 2 65.8 13 0.00045 37.1 7.6 101 80-193 31-147 (383)
23 1oj7_A Hypothetical oxidoreduc 65.8 11 0.00039 37.8 7.2 101 81-193 51-168 (408)
24 3uhj_A Probable glycerol dehyd 65.0 12 0.00041 37.6 7.1 85 81-186 53-138 (387)
25 1o4v_A Phosphoribosylaminoimid 64.2 47 0.0016 29.8 10.0 81 92-189 21-102 (183)
26 1vlj_A NADH-dependent butanol 63.9 17 0.00058 36.5 8.0 100 81-193 44-160 (407)
27 3iv7_A Alcohol dehydrogenase I 63.2 7.4 0.00025 38.8 5.1 84 80-186 37-120 (364)
28 3lp6_A Phosphoribosylaminoimid 62.5 48 0.0016 29.6 9.6 88 82-190 9-97 (174)
29 3ors_A N5-carboxyaminoimidazol 60.4 43 0.0015 29.6 8.9 87 82-189 5-92 (163)
30 3qbe_A 3-dehydroquinate syntha 59.1 39 0.0013 33.7 9.5 93 81-186 44-137 (368)
31 2ywx_A Phosphoribosylaminoimid 57.5 36 0.0012 29.9 7.8 69 98-186 13-82 (157)
32 3oow_A Phosphoribosylaminoimid 55.2 1.1E+02 0.0036 27.1 10.5 86 83-189 8-94 (166)
33 3kuu_A Phosphoribosylaminoimid 54.7 78 0.0027 28.2 9.6 76 82-169 14-90 (174)
34 3clh_A 3-dehydroquinate syntha 53.2 27 0.00091 34.3 7.2 94 80-186 26-119 (343)
35 1jq5_A Glycerol dehydrogenase; 52.5 25 0.00087 34.6 6.9 90 81-190 32-124 (370)
36 3ce9_A Glycerol dehydrogenase; 51.3 26 0.00087 34.4 6.7 86 81-188 35-124 (354)
37 3trh_A Phosphoribosylaminoimid 48.6 95 0.0032 27.5 9.2 76 82-169 8-84 (169)
38 1ta9_A Glycerol dehydrogenase; 48.3 44 0.0015 34.1 8.1 91 81-192 92-185 (450)
39 4b4k_A N5-carboxyaminoimidazol 46.6 1E+02 0.0035 27.5 9.1 86 79-186 20-108 (181)
40 1ujn_A Dehydroquinate synthase 46.3 31 0.001 33.9 6.3 91 80-186 28-118 (348)
41 2hig_A 6-phospho-1-fructokinas 45.7 41 0.0014 34.9 7.3 43 146-193 188-233 (487)
42 3rg8_A Phosphoribosylaminoimid 45.0 1.2E+02 0.0041 26.6 9.2 65 97-169 15-81 (159)
43 1xah_A Sadhqs, 3-dehydroquinat 40.5 42 0.0014 32.9 6.3 96 81-189 32-129 (354)
44 1pfk_A Phosphofructokinase; tr 39.8 93 0.0032 30.3 8.5 40 146-193 93-132 (320)
45 3s4e_A Dual specificity protei 36.1 5.7 0.00019 33.5 -0.8 32 17-48 74-106 (144)
46 3rf7_A Iron-containing alcohol 36.0 1E+02 0.0034 30.6 8.3 45 147-192 109-167 (375)
47 2j16_A SDP-1, tyrosine-protein 35.9 5.9 0.0002 35.5 -0.7 31 18-48 111-142 (182)
48 1zxx_A 6-phosphofructokinase; 34.4 92 0.0031 30.3 7.5 40 146-193 92-131 (319)
49 3emu_A Leucine rich repeat and 34.2 6.8 0.00023 34.0 -0.6 31 18-48 81-112 (161)
50 3ezz_A Dual specificity protei 33.2 6.7 0.00023 32.9 -0.8 32 17-48 74-106 (144)
51 3hno_A Pyrophosphate-dependent 30.6 1.2E+02 0.004 30.8 7.8 45 146-193 103-148 (419)
52 2nt2_A Protein phosphatase sli 29.1 8.6 0.00029 32.3 -0.9 31 18-48 75-106 (145)
53 4a3s_A 6-phosphofructokinase; 28.2 1.2E+02 0.0041 29.5 7.1 44 147-198 93-139 (319)
54 4hf7_A Putative acylhydrolase; 27.1 44 0.0015 29.4 3.6 59 153-218 57-115 (209)
55 3opy_A 6-phosphofructo-1-kinas 27.0 98 0.0033 34.8 6.9 47 146-193 687-733 (989)
56 3gw6_A Endo-N-acetylneuraminid 27.0 21 0.00071 34.1 1.3 14 149-162 47-60 (275)
57 2x9a_A Attachment protein G3P; 26.3 16 0.00055 27.0 0.3 11 150-160 40-50 (65)
58 3rgo_A Protein-tyrosine phosph 25.9 9.3 0.00032 32.3 -1.2 31 18-48 83-114 (157)
59 3opy_B 6-phosphofructo-1-kinas 25.7 1.1E+02 0.0039 34.2 7.1 47 146-193 661-707 (941)
60 3o8l_A 6-phosphofructokinase, 25.6 1.4E+02 0.0048 32.7 7.7 47 146-193 488-534 (762)
61 1zzw_A Dual specificity protei 25.5 9.9 0.00034 32.1 -1.1 31 18-48 77-108 (149)
62 2f48_A Diphosphate--fructose-6 25.4 1.4E+02 0.0046 31.5 7.4 45 146-193 165-210 (555)
63 1wrm_A Dual specificity phosph 25.3 10 0.00035 32.8 -1.1 31 18-48 77-108 (165)
64 2hcm_A Dual specificity protei 24.9 10 0.00036 32.6 -1.1 31 18-48 83-114 (164)
65 2h31_A Multifunctional protein 24.1 2.9E+02 0.01 27.9 9.3 84 81-186 266-352 (425)
66 3f81_A Dual specificity protei 23.1 13 0.00046 32.4 -0.8 25 24-48 115-140 (183)
67 2esb_A Dual specificity protei 22.5 14 0.00047 32.8 -0.8 31 18-48 91-122 (188)
68 3cm3_A Late protein H1, dual s 21.5 13 0.00044 32.4 -1.2 32 17-48 101-133 (176)
69 3hbm_A UDP-sugar hydrolase; PS 21.5 1.3E+02 0.0046 28.4 6.0 29 146-186 224-252 (282)
70 2g6z_A Dual specificity protei 21.3 17 0.00057 33.3 -0.6 31 18-48 77-108 (211)
71 2y96_A Dual specificity phosph 20.9 16 0.00054 33.5 -0.8 27 22-48 137-164 (219)
72 2r0b_A Serine/threonine/tyrosi 20.9 14 0.00049 31.2 -1.0 29 19-47 85-114 (154)
73 2hxp_A Dual specificity protei 20.2 15 0.00051 31.4 -1.1 31 18-48 79-110 (155)
No 1
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=100.00 E-value=1.4e-39 Score=324.55 Aligned_cols=260 Identities=18% Similarity=0.130 Sum_probs=185.8
Q ss_pred CCCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 79 ~~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
++++++||+||+||++++.+.++++++.|.... +++... .|++.+|++++++++. .+.+.||++||||
T Consensus 7 ~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~-~~~~~~-----~t~~~~~a~~~~~~~~------~~~d~vv~~GGDG 74 (304)
T 3s40_A 7 KFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAF-PDLHIL-----HTKEQGDATKYCQEFA------SKVDLIIVFGGDG 74 (304)
T ss_dssp SCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHC-SEEEEE-----ECCSTTHHHHHHHHHT------TTCSEEEEEECHH
T ss_pred CCCEEEEEECcccCCCchHHHHHHHHHHHHHcC-CeEEEE-----EccCcchHHHHHHHhh------cCCCEEEEEccch
Confidence 478999999999999999889999999998754 344432 3567899999998752 3678999999999
Q ss_pred hHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEEecCCCC
Q 013013 159 TVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGE 238 (451)
Q Consensus 159 Tv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~ 238 (451)
||+||+++|... ..++|||+||+||+|||||+||+ |.++.+++ +.+.+|+.+++|+|++
T Consensus 75 Tl~~v~~~l~~~-----~~~~~l~iiP~Gt~N~~ar~lg~----~~~~~~a~----~~i~~g~~~~iDlg~v-------- 133 (304)
T 3s40_A 75 TVFECTNGLAPL-----EIRPTLAIIPGGTCNDFSRTLGV----PQNIAEAA----KLITKEHVKPVDVAKA-------- 133 (304)
T ss_dssp HHHHHHHHHTTC-----SSCCEEEEEECSSCCHHHHHTTC----CSSHHHHH----HHHTTCCEEEEEEEEE--------
T ss_pred HHHHHHHHHhhC-----CCCCcEEEecCCcHHHHHHHcCC----CccHHHHH----HHHHhCCeEEEEEEEE--------
Confidence 999999999863 36799999999999999999999 65665554 4566899999999864
Q ss_pred ccCCCCCCCCCccccccccccccCCCCcccccccceeEeEeecchhHHHhhhhhhccccCCCccccCCCcceeecccccc
Q 013013 239 VVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCT 318 (451)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~r~~nkl~Y~~~g~~ 318 (451)
+++||+|++|+||||+|++.+++.+ | +..|+++|+..+++
T Consensus 134 --------------------------------~~~~F~~~~~~G~da~v~~~~~~~~--k------~~~G~~~Y~~~~l~ 173 (304)
T 3s40_A 134 --------------------------------NGQHFLNFWGIGLVSEVSNNIDAEE--K------AKLGKIGYYLSTIR 173 (304)
T ss_dssp --------------------------------TTEEESSEEEEC--------------------------CHHHHTTTC-
T ss_pred --------------------------------CCEEEEEEEeehHHHHHHHhcCHHH--h------hcCCchHHHHHHHH
Confidence 2479999999999999999987533 1 23388999998877
Q ss_pred cccccccccCCCcccccccceeEEEeeeccCCceEEeecCcceeEEEEcccCCCCCCCCCCCCChhhhhhcCCCCCcCCC
Q 013013 319 QGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADD 398 (451)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~i~~v~~~~~~~~~i~~~~~~ivv~N~~~~ggG~~~wg~~~~~~~~~~~~~~a~~dD 398 (451)
+++... ..++++. ++ ++.+ ..++..++|+|.+|||||+.++ |+++++|
T Consensus 174 ~l~~~~-------------~~~~~i~-~d---g~~~--~~~~~~v~v~N~~~~Ggg~~~~-------------p~a~~~D 221 (304)
T 3s40_A 174 TVKNAE-------------TFPVKIT-YD---GQVY--EDEAVLVMVGNGEYLGGIPSFI-------------PNVKCDD 221 (304)
T ss_dssp -----C-------------CEEEEEE-ET---TEEE--EEEEEEEEEECSSEETTEECSS-------------TTCCTTS
T ss_pred HHhhcC-------------CceEEEE-EC---CEEE--EeEEEEEEEECCCcCCCCcccC-------------CCCcCCC
Confidence 653221 2344443 33 3433 3458899999999999998863 7899999
Q ss_pred CeEEEEEEcchh--hHHHHHhhcc------CceEEeeeceEEEEEeCCcchhh
Q 013013 399 GLLEIFGLKQGW--HASFVMVELI------SAKHIAQVLQSLQSFVCSLSKQK 443 (451)
Q Consensus 399 GlLeVv~l~~~~--~~~~~~~~l~------~g~~l~Q~~~i~i~~~~~~~~~~ 443 (451)
|+|||+++++.. .+..++..+. ...+..|+++++|++.++.++|.
T Consensus 222 G~Ldv~~v~~~~~~~l~~l~~~~~~g~~~~~~v~~~~~~~v~i~~~~~~~~~~ 274 (304)
T 3s40_A 222 GTLDIFVVKSTGIQAFKDYIGKKLFEDSNENDIFHVKAKSIHIETEEEKEVDT 274 (304)
T ss_dssp SCEEEEEEETTCHHHHHHHTTCCCSSCCCTTTEEEEEESEEEEEESSCCEEEE
T ss_pred CEEEEEEEccCCHHHHHHHHHHHhcCCCCCCcEEEEEccEEEEEeCCCcEEEe
Confidence 999999998843 2333333222 34678999999999998887764
No 2
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=100.00 E-value=1.1e-35 Score=300.33 Aligned_cols=259 Identities=17% Similarity=0.126 Sum_probs=188.8
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
+++++||+||.||++++.+.++++++.|.... +++... .|.+.+++.++++++. ..+.+.||++|||||
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g-~~~~~~-----~t~~~~~a~~~~~~~~-----~~~~d~vvv~GGDGT 92 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAG-YETSAY-----ATEKIGDATLEAERAM-----HENYDVLIAAGGDGT 92 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTT-EEEEEE-----ECCSTTHHHHHHHHHT-----TTTCSEEEEEECHHH
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHcC-CeEEEE-----EecCcchHHHHHHHHh-----hcCCCEEEEEcCchH
Confidence 46799999999999988888999999998753 455443 2345578888876542 245689999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEEecCCCCc
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~ 239 (451)
|+||+++|.+. ...+|||+||+||+|||||+||+ |.++.++++ .+.+|+.+++|+|++
T Consensus 93 v~~v~~~l~~~-----~~~~pl~iIP~GT~N~lAr~Lg~----~~~~~~al~----~i~~g~~~~iD~g~v--------- 150 (337)
T 2qv7_A 93 LNEVVNGIAEK-----PNRPKLGVIPMGTVNDFGRALHI----PNDIMGALD----VIIEGHSTKVDIGKM--------- 150 (337)
T ss_dssp HHHHHHHHTTC-----SSCCEEEEEECSSCCHHHHHTTC----CSSHHHHHH----HHHHTCEEEEEEEEE---------
T ss_pred HHHHHHHHHhC-----CCCCcEEEecCCcHhHHHHHcCC----CCCHHHHHH----HHHcCCcEEEEEEEE---------
Confidence 99999999653 36799999999999999999999 556655554 456799999999864
Q ss_pred cCCCCCCCCCccccccccccccCCCCcccccccceeEeEeecchhHHHhhhhhhccccCCCccccCCCcceeeccccccc
Q 013013 240 VDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQ 319 (451)
Q Consensus 240 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~r~~nkl~Y~~~g~~~ 319 (451)
++++|+|++++||||+|++.++..+ | +..|+++|...++.+
T Consensus 151 -------------------------------~~r~fl~~~~~G~~a~v~~~~~~~~--k------~~~G~~~Y~~~~l~~ 191 (337)
T 2qv7_A 151 -------------------------------NNRYFINLAAGGQLTQVSYETPSKL--K------SIVGPFAYYIKGFEM 191 (337)
T ss_dssp -------------------------------TTEEESSEEEEECBCC---------------------CGGGSCCCTTTT
T ss_pred -------------------------------CCEEEEEEeeecccHHHHHHhhHHH--H------hccChHHHHHHHHHH
Confidence 1478999999999999999887543 1 223889999888776
Q ss_pred ccccccccCCCcccccccceeEEEeeeccCCceEEeecCcceeEEEEcccCCCCCCCCCCCCChhhhhhcCCCCCcCCCC
Q 013013 320 GWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDG 399 (451)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~~~~~i~~v~~~~~~~~~i~~~~~~ivv~N~~~~ggG~~~wg~~~~~~~~~~~~~~a~~dDG 399 (451)
++.. ..+++++. ++ ++.+ ..+...+++.|+++++||..+| |.++++||
T Consensus 192 l~~~-------------~~~~~~i~-~d---g~~~--~~~~~~v~v~n~~~~gGg~~i~-------------P~a~~~DG 239 (337)
T 2qv7_A 192 LPQM-------------KAVDLRIE-YD---GNVF--QGEALLFFLGLTNSMAGFEKLV-------------PDAKLDDG 239 (337)
T ss_dssp GGGB-------------CCEEEEEE-ET---TEEE--EEEEEEEEEESSCCCSSCSCSS-------------TTCCSSSS
T ss_pred HHhC-------------CCccEEEE-EC---CEEE--EeeEEEEEEECCCCCCCCCccC-------------CCCcCCCC
Confidence 5321 12344443 33 2433 3457889999999999999874 78999999
Q ss_pred eEEEEEEcch--hhHHHHHhhccCc-------eEEeeeceEEEEEeCCcchh
Q 013013 400 LLEIFGLKQG--WHASFVMVELISA-------KHIAQVLQSLQSFVCSLSKQ 442 (451)
Q Consensus 400 lLeVv~l~~~--~~~~~~~~~l~~g-------~~l~Q~~~i~i~~~~~~~~~ 442 (451)
+||++++++. +.+..++..+..| .++.|+++++|+..++.++|
T Consensus 240 ~ldv~~v~~~~~~~l~~~~~~v~~g~~~~~~~v~~~~~~~i~i~~~~~~~~~ 291 (337)
T 2qv7_A 240 YFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSFTDLQLN 291 (337)
T ss_dssp CEEEEEEECCCHHHHHHHHHHHTTTCGGGSTTEEEEEESEEEEECSSCCEEE
T ss_pred eEEEEEEccCCHHHHHHHHHHHhcCCccCCCCEEEEEeeEEEEEECCCCeEE
Confidence 9999999984 4444444444433 57889999999977666654
No 3
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=100.00 E-value=1.7e-35 Score=298.39 Aligned_cols=259 Identities=18% Similarity=0.141 Sum_probs=182.3
Q ss_pred CCCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 79 ~~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
.+++++||+||.||++ +.++++.+.|.... +++... .|.+.+++.++++++. ..+.+.||++||||
T Consensus 28 ~~~~~~vi~Np~sg~~---~~~~~i~~~l~~~g-~~~~~~-----~t~~~~~~~~~~~~~~-----~~~~d~vvv~GGDG 93 (332)
T 2bon_A 28 EFPASLLILNGKSTDN---LPLREAIMLLREEG-MTIHVR-----VTWEKGDAARYVEEAR-----KFGVATVIAGGGDG 93 (332)
T ss_dssp --CCEEEEECSSSTTC---HHHHHHHHHHHTTT-CCEEEE-----ECCSTTHHHHHHHHHH-----HHTCSEEEEEESHH
T ss_pred hcceEEEEECCCCCCC---chHHHHHHHHHHcC-CcEEEE-----EecCcchHHHHHHHHH-----hcCCCEEEEEccch
Confidence 3678999999999976 46677888887643 344432 2334567777776542 23568999999999
Q ss_pred hHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEEEecCCCC
Q 013013 159 TVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGE 238 (451)
Q Consensus 159 Tv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~ 238 (451)
||+||+++|.+... ...+|||+||+||+|||||+||| |.++.++++ .+.+|+.+++|+|.+
T Consensus 94 Tl~~v~~~l~~~~~---~~~~plgiiP~Gt~N~fa~~l~i----~~~~~~al~----~i~~g~~~~iDlg~v-------- 154 (332)
T 2bon_A 94 TINEVSTALIQCEG---DDIPALGILPLGTANDFATSVGI----PEALDKALK----LAIAGDAIAIDMAQV-------- 154 (332)
T ss_dssp HHHHHHHHHHHCCS---SCCCEEEEEECSSSCHHHHHTTC----CSSHHHHHH----HHHHSEEEEEEEEEE--------
T ss_pred HHHHHHHHHhhccc---CCCCeEEEecCcCHHHHHHhcCC----CCCHHHHHH----HHHcCCeEEeeEEEE--------
Confidence 99999999985321 36789999999999999999999 556655554 456799999999864
Q ss_pred ccCCCCCCCCCccccccccccccCCCCcccccccc-eeEeEeecchhHHHhhhhhhccccCCCccccCCCcceeeccccc
Q 013013 239 VVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEG-VFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSC 317 (451)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~f~N~~sIG~DA~V~~~f~~~R~~kp~~~~~r~~nkl~Y~~~g~ 317 (451)
+++ +|+|++|+||||+|++.+++.+ | .++ |+++|+..++
T Consensus 155 --------------------------------~~r~~fl~~~~~G~da~v~~~~~~~~--k-----~~~-G~~~Y~~~~l 194 (332)
T 2bon_A 155 --------------------------------NKQTCFINMATGGFGTRITTETPEKL--K-----AAL-GSVSYIIHGL 194 (332)
T ss_dssp --------------------------------TTSCEESSEEEEEEEEEC-----------------CC-HHHHHHHHHT
T ss_pred --------------------------------CCceEEEEEEeECccHHHHHHhhHHh--H-----hcc-cHHHHHHHHH
Confidence 124 9999999999999998776432 1 123 8899998877
Q ss_pred ccccccccccCCCcccccccceeEEEeeeccCCceEEeecCcceeEEEEcccCCCCCCCCCCCCChhhhhhcCCCCCcCC
Q 013013 318 TQGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHAD 397 (451)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~~~~~~i~~v~~~~~~~~~i~~~~~~ivv~N~~~~ggG~~~wg~~~~~~~~~~~~~~a~~d 397 (451)
+.++.. ..+++++. ++ ++.+ ..+...++++|++||+||..+| |.++++
T Consensus 195 ~~l~~~-------------~~~~~~i~-~d---g~~~--~~~~~~v~v~N~~~~ggg~~i~-------------P~a~~~ 242 (332)
T 2bon_A 195 MRMDTL-------------QPDRCEIR-GE---NFHW--QGDALVIGIGNGRQAGGGQQLC-------------PNALIN 242 (332)
T ss_dssp SCEEEE-------------ECEEEEEE-ET---TEEE--EEEESEEEEESSSCBTTTBCSC-------------TTCCTT
T ss_pred HHHhhC-------------CCeeEEEE-EC---CEEE--EEEEEEEEEECCCccCCCcccC-------------CCCCCC
Confidence 654321 12344443 33 2433 2357888999999999999874 789999
Q ss_pred CCeEEEEEEcchhhHHHHHhhcc-----CceEEeeeceEEEEEeCCcchh
Q 013013 398 DGLLEIFGLKQGWHASFVMVELI-----SAKHIAQVLQSLQSFVCSLSKQ 442 (451)
Q Consensus 398 DGlLeVv~l~~~~~~~~~~~~l~-----~g~~l~Q~~~i~i~~~~~~~~~ 442 (451)
||+|||+++++..++..++..+. ...++.++++++|+..++.++|
T Consensus 243 DG~Ldv~iv~~~~~~l~~~~~~~~g~~~~~v~~~~~~~i~I~~~~~~~~~ 292 (332)
T 2bon_A 243 DGLLQLRIFTGDEILPALVSTLKSDEDNPNIIEGASSWFDIQAPHDITFN 292 (332)
T ss_dssp SSCEEEEEECCSSCCHHHHHHHHTTCCCTTEEEEEESEEEEEEEEEEEEE
T ss_pred CCeEEEEEECCHHHHHHHHHHHHcCCCCCcEEEEEeeEEEEEECCCCeEE
Confidence 99999999998633333333333 3467889999999987666655
No 4
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=98.64 E-value=1.4e-07 Score=92.63 Aligned_cols=122 Identities=14% Similarity=0.032 Sum_probs=69.7
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhc-cch--hhhccCCCcEEEEEcC
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAEL-GDF--CAKDTRQKMRIVVAGG 156 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~-~~~--~~~~~~~~~~Ivv~GG 156 (451)
+++++||+||.++. ..+..+.+.+.|... .+++...... ++.+... ... ......+.|.||++||
T Consensus 5 mkki~ii~np~~~~--~~~~~~~i~~~l~~~-g~~v~~~~~~---------~~~~~~~~~~~~~~~~~~~~~D~vi~~GG 72 (292)
T 2an1_A 5 FKCIGIVGHPRHPT--ALTTHEMLYRWLCDQ-GYEVIVEQQI---------AHELQLKNVPTGTLAEIGQQADLAVVVGG 72 (292)
T ss_dssp CCEEEEECC---------CHHHHHHHHHHHT-TCEEEEEHHH---------HHHTTCSSCCEECHHHHHHHCSEEEECSC
T ss_pred CcEEEEEEcCCCHH--HHHHHHHHHHHHHHC-CCEEEEecch---------hhhcccccccccchhhcccCCCEEEEEcC
Confidence 57899999998753 345777888888765 4555432110 1111000 000 0000124579999999
Q ss_pred chhHHHHHHHhhhcccCCCCCCCc-EEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEE
Q 013013 157 DGTVGWVLGSVGELNKQGREPVPP-VAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAV 231 (451)
Q Consensus 157 DGTv~~Vln~L~~~~~~~~~~~~p-lgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~ 231 (451)
|||++++++.+.+ ..+| +|| |+||.|+|++ ++ |.++.++++ .+.+|+..--+...+.
T Consensus 73 DGT~l~a~~~~~~-------~~~P~lGI-~~Gt~gfla~-~~-----~~~~~~al~----~i~~g~~~~~~r~~l~ 130 (292)
T 2an1_A 73 DGNMLGAARTLAR-------YDINVIGI-NRGNLGFLTD-LD-----PDNALQQLS----DVLEGRYISEKRFLLE 130 (292)
T ss_dssp HHHHHHHHHHHTT-------SSCEEEEB-CSSSCCSSCC-BC-----TTSHHHHHH----HHHTTCEEEEEEEEEE
T ss_pred cHHHHHHHHHhhc-------CCCCEEEE-ECCCcccCCc-CC-----HHHHHHHHH----HHHcCCCEEEEeEEEE
Confidence 9999999999975 2345 565 8999888886 33 445544544 4567877544444443
No 5
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=98.56 E-value=1.5e-07 Score=93.27 Aligned_cols=128 Identities=14% Similarity=0.146 Sum_probs=72.4
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccch-hc--cc-h------h-HHHHHHhccchhhhccCCC
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEF-VQ--YG-L------A-CLEKLAELGDFCAKDTRQK 148 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~-~t--~~-~------~-~a~~la~~~~~~~~~~~~~ 148 (451)
++++++|+||.++. ..+...++.+.|..+. +++....+... +. .. . + +.+.+++.. ....+.
T Consensus 4 m~ki~iI~n~~~~~--~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~ 76 (307)
T 1u0t_A 4 HRSVLLVVHTGRDE--ATETARRVEKVLGDNK-IALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQ----HAADGC 76 (307)
T ss_dssp -CEEEEEESSSGGG--GSHHHHHHHHHHHTTT-CEEEEEC---------------------------------------C
T ss_pred CCEEEEEEeCCCHH--HHHHHHHHHHHHHHCC-CEEEEecchhhhhhccccccccccccccccccccccc----ccccCC
Confidence 57899999999964 3467788888887653 45443221110 00 00 0 0 111111100 012456
Q ss_pred cEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeee
Q 013013 149 MRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSW 228 (451)
Q Consensus 149 ~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w 228 (451)
|.||++|||||+.++++.+... ..|.+| |++||.|.|+. +. |.++.++++ .+.+|+...-+..
T Consensus 77 d~vi~~GGDGT~l~a~~~~~~~------~~pvlg-i~~G~~gfl~~-~~-----~~~~~~~~~----~i~~g~~~~~~r~ 139 (307)
T 1u0t_A 77 ELVLVLGGDGTFLRAAELARNA------SIPVLG-VNLGRIGFLAE-AE-----AEAIDAVLE----HVVAQDYRVEDRL 139 (307)
T ss_dssp CCEEEEECHHHHHHHHHHHHHH------TCCEEE-EECSSCCSSCS-EE-----GGGHHHHHH----HHHHTCCEEEEEC
T ss_pred CEEEEEeCCHHHHHHHHHhccC------CCCEEE-EeCCCCccCcc-cC-----HHHHHHHHH----HHHcCCcEEEEEE
Confidence 8999999999999999999762 223456 58999999985 42 445444444 4556776655554
Q ss_pred EEE
Q 013013 229 HAV 231 (451)
Q Consensus 229 ~i~ 231 (451)
.+.
T Consensus 140 ~l~ 142 (307)
T 1u0t_A 140 TLD 142 (307)
T ss_dssp CEE
T ss_pred EEE
Confidence 443
No 6
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=98.54 E-value=1.2e-07 Score=91.87 Aligned_cols=106 Identities=20% Similarity=0.215 Sum_probs=69.5
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhH
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv 160 (451)
+++++|+||.+|++ ..++.+++.+.|. .+++.. . + + . ...+.|.||++|||||+
T Consensus 1 mki~ii~Np~~~~~-~~~~~~~i~~~l~---~~~~~~---------~--~-----~-~-----~~~~~D~vv~~GGDGTl 54 (258)
T 1yt5_A 1 MKIAILYREEREKE-GEFLKEKISKEHE---VIEFGE---------A--N-----A-P-----GRVTADLIVVVGGDGTV 54 (258)
T ss_dssp CEEEEEECGGGHHH-HHHHHHHHTTTSE---EEEEEE---------S--S-----S-C-----SCBCCSEEEEEECHHHH
T ss_pred CEEEEEEeCCCchH-HHHHHHHHHHHhc---CCceec---------c--c-----c-c-----ccCCCCEEEEEeCcHHH
Confidence 36899999999976 6667777777665 334321 1 1 1 1 12457899999999999
Q ss_pred HHHHHHhhhcccCCCCCCCc-EEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEE
Q 013013 161 GWVLGSVGELNKQGREPVPP-VAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAV 231 (451)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~p-lgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~ 231 (451)
.++++.+.+ .+| +|| ++||.+.|+. +. |.++.++ ++.+.+|+..--++..+.
T Consensus 55 l~~a~~~~~--------~~PilGI-n~G~~Gfl~~-~~-----~~~~~~a----l~~i~~g~~~i~~r~~l~ 107 (258)
T 1yt5_A 55 LKAAKKAAD--------GTPMVGF-KAGRLGFLTS-YT-----LDEIDRF----LEDLRNWNFREETRWFIQ 107 (258)
T ss_dssp HHHHTTBCT--------TCEEEEE-ESSSCCSSCC-BC-----GGGHHHH----HHHHHTTCCEEEEEEEEE
T ss_pred HHHHHHhCC--------CCCEEEE-ECCCCCccCc-CC-----HHHHHHH----HHHHHcCCceEEEEEEEE
Confidence 999998863 345 666 6999966664 53 4454444 445667876544444443
No 7
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=98.40 E-value=1e-06 Score=85.85 Aligned_cols=104 Identities=12% Similarity=0.071 Sum_probs=68.5
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhH
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv 160 (451)
+++.+|+||+ .+..+..+++.+.|... .+++. ..+.|.||++|||||+
T Consensus 1 mki~ii~n~~---~~~~~~~~~l~~~l~~~-g~~v~----------------------------~~~~D~vv~lGGDGT~ 48 (272)
T 2i2c_A 1 MKYMITSKGD---EKSDLLRLNMIAGFGEY-DMEYD----------------------------DVEPEIVISIGGDGTF 48 (272)
T ss_dssp CEEEEEECCS---HHHHHHHHHHHHHHTTS-SCEEC----------------------------SSSCSEEEEEESHHHH
T ss_pred CEEEEEECCC---HHHHHHHHHHHHHHHHC-CCEeC----------------------------CCCCCEEEEEcCcHHH
Confidence 4688999973 24456777888888764 33331 1356799999999999
Q ss_pred HHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeEEE
Q 013013 161 GWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAV 231 (451)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~i~ 231 (451)
..++..+... ...+|+.-||+|| +.|...+. |.++. .+++.+.+|....-+...+.
T Consensus 49 l~aa~~~~~~-----~~~~PilGIn~G~-lgfl~~~~-----~~~~~----~~l~~l~~g~~~i~~r~~L~ 104 (272)
T 2i2c_A 49 LSAFHQYEER-----LDEIAFIGIHTGH-LGFYADWR-----PAEAD----KLVKLLAKGEYQKVSYPLLK 104 (272)
T ss_dssp HHHHHHTGGG-----TTTCEEEEEESSS-CCSSCCBC-----GGGHH----HHHHHHHTTCCEEEEEEEEE
T ss_pred HHHHHHHhhc-----CCCCCEEEEeCCC-CCcCCcCC-----HHHHH----HHHHHHHcCCCEEEEEEEEE
Confidence 9999999752 1256744449999 66777664 44444 44555667876544444443
No 8
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.00051 Score=70.06 Aligned_cols=128 Identities=19% Similarity=0.165 Sum_probs=73.8
Q ss_pred CCCeEEEEEcCCCCCCChhHHHHHHHHhhcccC-eeEEEeecccchhccchhHHHHHHhccc----------------hh
Q 013013 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQ-VFDLSEVKPHEFVQYGLACLEKLAELGD----------------FC 141 (451)
Q Consensus 79 ~~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~-~~dl~~~~p~~~~t~~~~~a~~la~~~~----------------~~ 141 (451)
++++++||.||... ...+...++.+.|..+. .+++.+. + ..++.+..... ..
T Consensus 40 ~~k~V~II~n~~~~--~~~~~~~~l~~~L~~~~~gi~V~ve-~--------~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 108 (388)
T 3afo_A 40 PLQNVYITKKPWTP--STREAMVEFITHLHESYPEVNVIVQ-P--------DVAEEISQDFKSPLENDPNRPHILYTGPE 108 (388)
T ss_dssp CCCEEEEEECTTCH--HHHHHHHHHHHHHHHHCTTCEEECC-H--------HHHHHHHTTCCSCGGGCTTSCEEEEECCH
T ss_pred CCcEEEEEEeCCCH--HHHHHHHHHHHHHHHhCCCeEEEEe-C--------chhhhhhhhccccccccccccccccccch
Confidence 46889999998743 34556777777776541 2444321 1 11222211110 00
Q ss_pred hhccCCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCC
Q 013013 142 AKDTRQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGP 221 (451)
Q Consensus 142 ~~~~~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~ 221 (451)
.....+.|.||++|||||+..++..+... ..+||--|++||-+-|+. +.. .+ ++..++.+.+|+
T Consensus 109 ~~~~~~~DlVIvlGGDGTlL~aa~~~~~~------~vpPiLGIN~G~lGFLt~-~~~-----~~----~~~al~~il~g~ 172 (388)
T 3afo_A 109 QDIVNRTDLLVTLGGDGTILHGVSMFGNT------QVPPVLAFALGTLGFLSP-FDF-----KE----HKKVFQEVISSR 172 (388)
T ss_dssp HHHHHHCSEEEEEESHHHHHHHHHTTTTS------CCCCEEEEECSSCCSSCC-EEG-----GG----HHHHHHHHHTTC
T ss_pred hhcccCCCEEEEEeCcHHHHHHHHHhccc------CCCeEEEEECCCcccCCc-CCh-----HH----HHHHHHHHhcCC
Confidence 00012458999999999999999888642 223555559998866653 432 23 444555667887
Q ss_pred eeeeeeeEEEEe
Q 013013 222 ICRLDSWHAVIQ 233 (451)
Q Consensus 222 ~~~iD~w~i~v~ 233 (451)
.....+..+.++
T Consensus 173 ~~~~~r~~L~~~ 184 (388)
T 3afo_A 173 AKCLHRTRLECH 184 (388)
T ss_dssp CEEEEECCEEEE
T ss_pred ceEEEeeEEEEE
Confidence 765555555543
No 9
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=95.73 E-value=0.032 Score=54.21 Aligned_cols=93 Identities=20% Similarity=0.297 Sum_probs=58.1
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhH
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv 160 (451)
+++.||.|+..- .+++.+.|... .+++...... +. ...+.|.||+.|||||+
T Consensus 30 mki~iv~~~~~~-------~~~l~~~L~~~-g~~v~~~~~~-------------~~-------~~~~~DlvIvlGGDGT~ 81 (278)
T 1z0s_A 30 MRAAVVYKTDGH-------VKRIEEALKRL-EVEVELFNQP-------------SE-------ELENFDFIVSVGGDGTI 81 (278)
T ss_dssp CEEEEEESSSTT-------HHHHHHHHHHT-TCEEEEESSC-------------CG-------GGGGSSEEEEEECHHHH
T ss_pred eEEEEEeCCcHH-------HHHHHHHHHHC-CCEEEEcccc-------------cc-------ccCCCCEEEEECCCHHH
Confidence 568999997654 45666667654 3444332110 00 12356799999999999
Q ss_pred HHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHH
Q 013013 161 GWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQ 215 (451)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~ 215 (451)
-.++..+.. . +||--|.+||-+=|+. +. +.+..++++++++
T Consensus 82 L~aa~~~~~-------~-~PilGIN~G~lGFLt~-~~-----~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 82 LRILQKLKR-------C-PPIFGINTGRVGLLTH-AS-----PENFEVELKKAVE 122 (278)
T ss_dssp HHHHTTCSS-------C-CCEEEEECSSSCTTCC-BB-----TTBCHHHHHHHHH
T ss_pred HHHHHHhCC-------C-CcEEEECCCCCccccc-cC-----HHHHHHHHHHHHh
Confidence 888766542 4 7888888886555553 21 3455566766653
No 10
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=95.40 E-value=0.16 Score=51.22 Aligned_cols=131 Identities=18% Similarity=0.180 Sum_probs=69.0
Q ss_pred CCCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhH-----HHHHHhcc----chhhhccCCCc
Q 013013 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLAC-----LEKLAELG----DFCAKDTRQKM 149 (451)
Q Consensus 79 ~~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~-----a~~la~~~----~~~~~~~~~~~ 149 (451)
+.+.++||--|..-. ......++.+.|..+ .+.+.+... +. +.... ........ .+........|
T Consensus 37 ~~k~I~iv~K~~~~~--~~~~~~~l~~~L~~~-~~~V~ve~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 110 (365)
T 3pfn_A 37 SPKSVLVIKKMRDAS--LLQPFKELCTHLMEE-NMIVYVEKK--VL-EDPAIASDESFGAVKKKFCTFREDYDDISNQID 110 (365)
T ss_dssp CCCEEEEEECTTCGG--GHHHHHHHHHHHHHT-SCEEEEEHH--HH-HSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCS
T ss_pred CCCEEEEEecCCCHH--HHHHHHHHHHHHHHC-CCEEEEehH--Hh-hhhccccccccccccccccccccChhhcccCCC
Confidence 578899998876542 344566777766654 345443210 00 00000 00000000 00001124568
Q ss_pred EEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHhcCCeeeeeeeE
Q 013013 150 RIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWH 229 (451)
Q Consensus 150 ~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~~g~~~~iD~w~ 229 (451)
.||+.|||||+=.++..+.+ ..+||--|-+| +||+=..++.+ .++..++++.+|...--.+..
T Consensus 111 lvI~lGGDGT~L~aa~~~~~-------~~~PvlGiN~G-------~LGFLt~~~~~---~~~~~l~~vl~g~~~v~~R~~ 173 (365)
T 3pfn_A 111 FIICLGGDGTLLYASSLFQG-------SVPPVMAFHLG-------SLGFLTPFSFE---NFQSQVTQVIEGNAAVVLRSR 173 (365)
T ss_dssp EEEEESSTTHHHHHHHHCSS-------SCCCEEEEESS-------SCTTTCCEEST---THHHHHHHHHHSCCBEEEECC
T ss_pred EEEEEcChHHHHHHHHHhcc-------CCCCEEEEcCC-------CCccceeecHH---HHHHHHHHHHcCCCeEEEEee
Confidence 99999999999999877753 45676666666 44543332222 244455556677765555554
Q ss_pred EEE
Q 013013 230 AVI 232 (451)
Q Consensus 230 i~v 232 (451)
+.+
T Consensus 174 L~~ 176 (365)
T 3pfn_A 174 LKV 176 (365)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 11
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=84.19 E-value=6.1 Score=39.33 Aligned_cols=101 Identities=23% Similarity=0.292 Sum_probs=57.7
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-e-EEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-F-DLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~-dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
++++||..+.+-...| +.+++.+.|..... + .+....|.. .....+++++.+. ....|.||++|| |
T Consensus 41 ~~~liVtd~~~~~~~g--~~~~v~~~L~~~g~~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~IIavGG-G 108 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNG--SLDDLKKLLDETEISYEIFDEVEENP----SFDNVMKAVERYR-----NDSFDFVVGLGG-G 108 (371)
T ss_dssp SEEEEEEESSGGGTSS--HHHHHHHHHHHTTCEEEEEEEECSSC----BHHHHHHHHHHHT-----TSCCSEEEEEES-H
T ss_pred CEEEEEECchHHhhcc--HHHHHHHHHHHcCCeEEEeCCccCCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC-h
Confidence 6889999875543322 55666666654321 1 122223332 2234455554432 235689999998 8
Q ss_pred hHHHHHHHhhhcccC------------CCCCCCcEEEecC--CCCcchh
Q 013013 159 TVGWVLGSVGELNKQ------------GREPVPPVAIIPL--GTGNDLS 193 (451)
Q Consensus 159 Tv~~Vln~L~~~~~~------------~~~~~~plgiIPl--GTgNDfA 193 (451)
++..+...+.-.... .....+|+..||. |||-...
T Consensus 109 sv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgse~t 157 (371)
T 1o2d_A 109 SPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTGSEVT 157 (371)
T ss_dssp HHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCCGGGC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCchhhhhc
Confidence 888887776543110 0015789999997 6665544
No 12
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=76.18 E-value=6.3 Score=39.09 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=52.4
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEE-eecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLS-EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~-~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
.++++||..+.. ..+.+++.+.|.... +.+. ...|.+ .....+++++.+. ..+.|.||++|| |
T Consensus 34 ~~r~liVtd~~~-----~~~~~~v~~~L~~~~-~~v~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG-G 97 (353)
T 3hl0_A 34 LSRALVLSTPQQ-----KGDAEALASRLGRLA-AGVFSEAAMHT----PVEVTKTAVEAYR-----AAGADCVVSLGG-G 97 (353)
T ss_dssp CCCEEEECCGGG-----HHHHHHHHHHHGGGE-EEEECCCCTTC----BHHHHHHHHHHHH-----HTTCSEEEEEES-H
T ss_pred CCEEEEEecCch-----hhHHHHHHHHHhhCC-cEEecCcCCCC----cHHHHHHHHHHHh-----ccCCCEEEEeCC-c
Confidence 367888887652 235677888787632 3221 222222 1233444444332 245689999999 9
Q ss_pred hHHHHHHHhhhcccCCCCCCCcEEEecC
Q 013013 159 TVGWVLGSVGELNKQGREPVPPVAIIPL 186 (451)
Q Consensus 159 Tv~~Vln~L~~~~~~~~~~~~plgiIPl 186 (451)
++..+.-.+.-. ..+|+..||.
T Consensus 98 s~iD~aK~iA~~------~~~p~i~IPT 119 (353)
T 3hl0_A 98 STTGLGKAIALR------TDAAQIVIPT 119 (353)
T ss_dssp HHHHHHHHHHHH------HCCEEEEEEC
T ss_pred HHHHHHHHHHhc------cCCCEEEEeC
Confidence 999888877653 4689999997
No 13
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=76.03 E-value=5.6 Score=39.59 Aligned_cols=86 Identities=15% Similarity=0.151 Sum_probs=52.1
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
.++++||..+.. ..+.+++.+.|....+.-+....|.. .....++.++.+. ..+.|.||++|| |+
T Consensus 36 ~~r~liVtd~~~-----~~~~~~v~~~L~~~~~~~f~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG-Gs 100 (358)
T 3jzd_A 36 AKRALVLCTPNQ-----QAEAERIADLLGPLSAGVYAGAVMHV----PIESARDATARAR-----EAGADCAVAVGG-GS 100 (358)
T ss_dssp CSCEEEECCGGG-----HHHHHHHHHHHGGGEEEEECCCCTTC----BHHHHHHHHHHHH-----HHTCSEEEEEES-HH
T ss_pred CCeEEEEeCCcH-----HHHHHHHHHHhccCCEEEecCCcCCC----CHHHHHHHHHHhh-----ccCCCEEEEeCC-cH
Confidence 367888887643 23567788888764221112222222 1233444444322 135679999999 99
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecC
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPL 186 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPl 186 (451)
+..+.-.+.-. ..+|+..||.
T Consensus 101 viD~aK~iA~~------~~~p~i~IPT 121 (358)
T 3jzd_A 101 TTGLGKAIALE------TGMPIVAIPT 121 (358)
T ss_dssp HHHHHHHHHHH------HCCCEEEEEC
T ss_pred HHHHHHHHHhc------cCCCEEEEeC
Confidence 99888877653 4588999997
No 14
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=73.44 E-value=32 Score=30.62 Aligned_cols=75 Identities=19% Similarity=0.177 Sum_probs=49.8
Q ss_pred eEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCC-CcEEEEEcCchh
Q 013013 82 PMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQ-KMRIVVAGGDGT 159 (451)
Q Consensus 82 ~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~-~~~Ivv~GGDGT 159 (451)
++.||.=..|- ....++....|....+ |++.+...+. .+..+.++++++. .++ ...|.++||.+-
T Consensus 14 ~V~IimGS~SD----~~v~~~a~~~l~~~gi~~ev~V~saHR----~p~~l~~~~~~a~-----~~g~~ViIa~AG~aah 80 (173)
T 4grd_A 14 LVGVLMGSSSD----WDVMKHAVAILQEFGVPYEAKVVSAHR----MPDEMFDYAEKAR-----ERGLRAIIAGAGGAAH 80 (173)
T ss_dssp SEEEEESSGGG----HHHHHHHHHHHHHTTCCEEEEECCTTT----SHHHHHHHHHHHT-----TTTCSEEEEEEESSCC
T ss_pred eEEEEeCcHhH----HHHHHHHHHHHHHcCCCEEEEEEcccc----CHHHHHHHHHHHH-----hcCCeEEEEecccccc
Confidence 46677643333 3455666666665554 8888765553 5667788877653 123 346788999999
Q ss_pred HHHHHHHhhh
Q 013013 160 VGWVLGSVGE 169 (451)
Q Consensus 160 v~~Vln~L~~ 169 (451)
+--++.++..
T Consensus 81 LpgvvA~~t~ 90 (173)
T 4grd_A 81 LPGMLAAKTT 90 (173)
T ss_dssp HHHHHHHHCC
T ss_pred chhhheecCC
Confidence 9999999863
No 15
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=69.02 E-value=11 Score=37.67 Aligned_cols=102 Identities=14% Similarity=0.198 Sum_probs=55.7
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEE---eecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLS---EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~---~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GG 156 (451)
.++++||..+..-... +.+.+++...|.... +++. ...|.. .....+++++.+. ..+.|.||++||
T Consensus 33 ~~~~livtd~~~~~~~-~g~~~~v~~~L~~~g-~~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~IIavGG 101 (387)
T 3bfj_A 33 GKKALLVTDKGLRAIK-DGAVDKTLHYLREAG-IEVAIFDGVEPNP----KDTNVRDGLAVFR-----REQCDIIVTVGG 101 (387)
T ss_dssp CSEEEEECCTTTC--C-CSSHHHHHHHHHHTT-CEEEEECCCCSSC----BHHHHHHHHHHHH-----HTTCCEEEEEES
T ss_pred CCEEEEEECcchhhcc-chHHHHHHHHHHHcC-CeEEEECCccCCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC
Confidence 3688999887665320 014556666665432 2222 222322 2233444544332 245589999998
Q ss_pred chhHHHHHHHhhhccc------------CCCCCCCcEEEecC--CCCcchh
Q 013013 157 DGTVGWVLGSVGELNK------------QGREPVPPVAIIPL--GTGNDLS 193 (451)
Q Consensus 157 DGTv~~Vln~L~~~~~------------~~~~~~~plgiIPl--GTgNDfA 193 (451)
|++..+...+.-.-. ......+|+..||. |||-...
T Consensus 102 -Gsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtgSevt 151 (387)
T 3bfj_A 102 -GSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTAGTASEVT 151 (387)
T ss_dssp -HHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECSTTCCGGGC
T ss_pred -cchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCcccccc
Confidence 888887777654200 00125789999998 6654443
No 16
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=68.56 E-value=6.4 Score=39.58 Aligned_cols=102 Identities=17% Similarity=0.159 Sum_probs=58.6
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccC-----eeEE--EeecccchhccchhHHHHHHhccchhhhc--cCCCcE
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQ-----VFDL--SEVKPHEFVQYGLACLEKLAELGDFCAKD--TRQKMR 150 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~-----~~dl--~~~~p~~~~t~~~~~a~~la~~~~~~~~~--~~~~~~ 150 (451)
.++++||.++... ....+++.+.|.... .+.+ ....+.+ -.......+++.+.+.+ .. ....+.
T Consensus 36 ~~k~liVtd~~v~----~~~~~~v~~~L~~~~~~~~~g~~~~~~~~~~gE-~~k~~~~v~~~~~~~~~--~~~~~~r~d~ 108 (393)
T 1sg6_A 36 STTYVLVTDTNIG----SIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGE-VSKSRQTKADIEDWMLS--QNPPCGRDTV 108 (393)
T ss_dssp CSEEEEEEEHHHH----HHHHHHHHHHHHHHHHHSSSCCEEEEEEECSSG-GGSSHHHHHHHHHHHHT--SSSCCCTTCE
T ss_pred CCeEEEEECCcHH----HHHHHHHHHHHHhhhccccCCceeEEEEeCCCC-CCCCHHHHHHHHHHHHH--cCCCCCCCCE
Confidence 4688999986443 224566666665420 1232 2222222 11122334444443321 01 123378
Q ss_pred EEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecC--CCCcchh
Q 013013 151 IVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLS 193 (451)
Q Consensus 151 Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPl--GTgNDfA 193 (451)
||++|| |++..+...+.-.. ...+|+..||. ||+.|-+
T Consensus 109 iIalGG-Gsv~D~ak~~Aa~~----~rgip~i~IPTTlla~~das 148 (393)
T 1sg6_A 109 VIALGG-GVIGDLTGFVASTY----MRGVRYVQVPTTLLAMVDSS 148 (393)
T ss_dssp EEEEES-HHHHHHHHHHHHHG----GGCCEEEEEECSHHHHHTTT
T ss_pred EEEECC-cHHHHHHHHHHHHh----cCCCCEEEECCchhhhhhcC
Confidence 998988 89998888776432 25789999999 8998884
No 17
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=67.38 E-value=44 Score=30.03 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=57.0
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
..++.||.=..|- ....++....|....+ ||+.+...+ +.+....++++++.+ ..-...|.++||.+
T Consensus 21 ~~~V~IimGS~SD----~~v~~~a~~~L~~~Gi~~dv~V~SaH----R~p~~l~~~~~~a~~----~g~~ViIa~AG~aa 88 (182)
T 1u11_A 21 APVVGIIMGSQSD----WETMRHADALLTELEIPHETLIVSAH----RTPDRLADYARTAAE----RGLNVIIAGAGGAA 88 (182)
T ss_dssp CCSEEEEESSGGG----HHHHHHHHHHHHHTTCCEEEEECCTT----TCHHHHHHHHHHTTT----TTCCEEEEEEESSC
T ss_pred CCEEEEEECcHHH----HHHHHHHHHHHHHcCCCeEEEEEccc----CCHHHHHHHHHHHHh----CCCcEEEEecCchh
Confidence 3457777644433 3455666666665444 888876554 356778888876531 11235688899999
Q ss_pred hHHHHHHHhhhcccCCCCCCCcEEEecCCCC
Q 013013 159 TVGWVLGSVGELNKQGREPVPPVAIIPLGTG 189 (451)
Q Consensus 159 Tv~~Vln~L~~~~~~~~~~~~plgiIPlGTg 189 (451)
-+--++.++.. .|+--+|.-++
T Consensus 89 ~LpgvvA~~t~---------~PVIgVP~~~~ 110 (182)
T 1u11_A 89 HLPGMCAAWTR---------LPVLGVPVESR 110 (182)
T ss_dssp CHHHHHHHHCS---------SCEEEEEECCT
T ss_pred hhHHHHHhccC---------CCEEEeeCCCC
Confidence 99999999853 45555565444
No 18
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=66.68 E-value=25 Score=31.24 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=51.7
Q ss_pred CCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhHHHHHHHhhhc
Q 013013 92 GGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGEL 170 (451)
Q Consensus 92 G~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv~~Vln~L~~~ 170 (451)
|+..-....++....|....+ ||+.+...+ +.+....++++++.+ ..-...|.++||.+-+.-++.++..
T Consensus 19 GS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaH----R~p~~l~~~~~~a~~----~g~~ViIa~AG~aa~LpgvvA~~t~- 89 (170)
T 1xmp_A 19 GSTSDWETMKYACDILDELNIPYEKKVVSAH----RTPDYMFEYAETARE----RGLKVIIAGAGGAAHLPGMVAAKTN- 89 (170)
T ss_dssp SSGGGHHHHHHHHHHHHHTTCCEEEEECCTT----TSHHHHHHHHHHTTT----TTCCEEEEEEESSCCHHHHHHTTCC-
T ss_pred CcHHHHHHHHHHHHHHHHcCCCEEEEEEecc----CCHHHHHHHHHHHHh----CCCcEEEEECCchhhhHHHHHhccC-
Confidence 433333456666666665444 888876544 356777888876531 1123567889999999999988853
Q ss_pred ccCCCCCCCcEEEecCCCC
Q 013013 171 NKQGREPVPPVAIIPLGTG 189 (451)
Q Consensus 171 ~~~~~~~~~plgiIPlGTg 189 (451)
.|+--+|.-++
T Consensus 90 --------~PVIgVP~~~~ 100 (170)
T 1xmp_A 90 --------LPVIGVPVQSK 100 (170)
T ss_dssp --------SCEEEEEECCT
T ss_pred --------CCEEEeeCCCC
Confidence 45555666444
No 19
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=66.25 E-value=22 Score=35.81 Aligned_cols=95 Identities=15% Similarity=0.190 Sum_probs=55.7
Q ss_pred CCCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEE--eecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 013013 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLS--EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (451)
Q Consensus 79 ~~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~--~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GG 156 (451)
..++++||.++... +.+.+++.+.|.... +++. .....+ -.......+++.+.+.+. .....+.||++||
T Consensus 61 ~~~rvlIVtd~~v~----~~~~~~v~~~L~~~g-~~~~~~~~~~gE-~~kt~~~v~~~~~~l~~~--~~~R~d~IIAvGG 132 (390)
T 3okf_A 61 AKQKVVIVTNHTVA----PLYAPAIISLLDHIG-CQHALLELPDGE-QYKTLETFNTVMSFLLEH--NYSRDVVVIALGG 132 (390)
T ss_dssp TTCEEEEEEETTTH----HHHHHHHHHHHHHHT-CEEEEEEECSSG-GGCBHHHHHHHHHHHHHT--TCCTTCEEEEEES
T ss_pred CCCEEEEEECCcHH----HHHHHHHHHHHHHcC-CeEEEEEECCCc-CCchHHHHHHHHHHHHhc--CCCcCcEEEEECC
Confidence 45789999998654 236677877777543 2332 221111 111223445554433211 1233478898888
Q ss_pred chhHHHHHHHhhhcccCCCCCCCcEEEecC
Q 013013 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (451)
Q Consensus 157 DGTv~~Vln~L~~~~~~~~~~~~plgiIPl 186 (451)
|++..+...+.... ...+|+..||.
T Consensus 133 -Gsv~D~ak~~Aa~~----~rgip~I~IPT 157 (390)
T 3okf_A 133 -GVIGDLVGFAAACY----QRGVDFIQIPT 157 (390)
T ss_dssp -HHHHHHHHHHHHHB----TTCCEEEEEEC
T ss_pred -cHHhhHHHHHHHHh----cCCCCEEEeCC
Confidence 99998888775322 25789999997
No 20
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=66.00 E-value=7.9 Score=38.58 Aligned_cols=99 Identities=13% Similarity=0.240 Sum_probs=55.4
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEE---eecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLS---EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~---~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GG 156 (451)
.++++||..+..... .+.+++...|.... +++. ...|.. .....+++++.+. ..+.|.||++||
T Consensus 31 ~~~~livtd~~~~~~---g~~~~v~~~L~~~g-~~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~IIavGG 97 (386)
T 1rrm_A 31 YQKALIVTDKTLVQC---GVVAKVTDKMDAAG-LAWAIYDGVVPNP----TITVVKEGLGVFQ-----NSGADYLIAIGG 97 (386)
T ss_dssp CCEEEEECBHHHHHT---THHHHHHHHHHHTT-CEEEEECBCCSSC----BHHHHHHHHHHHH-----HHTCSEEEEEES
T ss_pred CCEEEEEECcchhhc---hHHHHHHHHHHHcC-CeEEEECCccCCC----CHHHHHHHHHHHH-----hcCcCEEEEeCC
Confidence 368888887654211 25677777776532 2222 222322 2234455544432 135589999999
Q ss_pred chhHHHHHHHhhhcccCC--------------CCCCCcEEEecC--CCCcch
Q 013013 157 DGTVGWVLGSVGELNKQG--------------REPVPPVAIIPL--GTGNDL 192 (451)
Q Consensus 157 DGTv~~Vln~L~~~~~~~--------------~~~~~plgiIPl--GTgNDf 192 (451)
|++..+...+.-..... ..+.+|+..||. |||-..
T Consensus 98 -Gsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtgSev 148 (386)
T 1rrm_A 98 -GSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTAAEV 148 (386)
T ss_dssp -HHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSCCTTT
T ss_pred -hHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCCchhhh
Confidence 88888777664322000 024789999998 665433
No 21
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=65.95 E-value=8.8 Score=38.17 Aligned_cols=95 Identities=18% Similarity=0.176 Sum_probs=54.9
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
.++++||.++.... ...+++...|...-.+........+ -.......+++.+.+.+ ......+.||++|| |+
T Consensus 34 ~~k~liVtd~~v~~----~~~~~v~~~L~~~~~~~~~~~~~ge-~~k~~~~v~~~~~~~~~--~~~~r~d~iIalGG-Gs 105 (368)
T 2gru_A 34 FDQYIMISDSGVPD----SIVHYAAEYFGKLAPVHILRFQGGE-EYKTLSTVTNLQERAIA--LGANRRTAIVAVGG-GL 105 (368)
T ss_dssp CSEEEEEEETTSCH----HHHHHHHHHHTTTSCEEEEEECCSG-GGCSHHHHHHHHHHHHH--TTCCTTEEEEEEES-HH
T ss_pred CCEEEEEECCcHHH----HHHHHHHHHHHhccceeEEEeCCCC-CCCCHHHHHHHHHHHHh--cCCCCCcEEEEECC-hH
Confidence 47899999977653 2567777777643012222221111 11222334444433221 01234678898988 99
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecC
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPL 186 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPl 186 (451)
+..+...+.... ...+|+..||.
T Consensus 106 v~D~ak~~Aa~~----~rgip~i~IPT 128 (368)
T 2gru_A 106 TGNVAGVAAGMM----FRGIALIHVPT 128 (368)
T ss_dssp HHHHHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHHHHh----cCCCCEEEECC
Confidence 999888876432 25789999998
No 22
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=65.81 E-value=13 Score=37.08 Aligned_cols=101 Identities=11% Similarity=0.205 Sum_probs=56.6
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-e-EEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-F-DLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~-dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (451)
.++++||..+.--. ..+.+++.+.|....+ + .+....|.. .....+++++.+. ..+.|.||++||
T Consensus 31 ~~~~liVtd~~~~~---~g~~~~v~~~L~~~gi~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG- 97 (383)
T 3ox4_A 31 FKNALIVSDAFMNK---SGVVKQVADLLKAQGINSAVYDGVMPNP----TVTAVLEGLKILK-----DNNSDFVISLGG- 97 (383)
T ss_dssp CCEEEEEEEHHHHH---TTHHHHHHHHHHTTTCEEEEEEEECSSC----BHHHHHHHHHHHH-----HHTCSEEEEEES-
T ss_pred CCEEEEEECCchhh---CchHHHHHHHHHHcCCeEEEECCccCCC----CHHHHHHHHHHHH-----hcCcCEEEEeCC-
Confidence 46788888763211 1256777777775432 1 122233332 2233444444332 135689999999
Q ss_pred hhHHHHHHHhhhcccC------------CCCCCCcEEEecC--CCCcchh
Q 013013 158 GTVGWVLGSVGELNKQ------------GREPVPPVAIIPL--GTGNDLS 193 (451)
Q Consensus 158 GTv~~Vln~L~~~~~~------------~~~~~~plgiIPl--GTgNDfA 193 (451)
|++..+.-.+.-.... ...+.+|+..||. |||-...
T Consensus 98 Gsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgSe~t 147 (383)
T 3ox4_A 98 GSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTASEMT 147 (383)
T ss_dssp HHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCCTTTC
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCchhhcC
Confidence 8888877766432100 0124789999998 6654433
No 23
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=65.80 E-value=11 Score=37.81 Aligned_cols=101 Identities=13% Similarity=0.205 Sum_probs=55.0
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhH
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv 160 (451)
++++||..+.+-.. ..+.+++...|....+..+....|.+ .....+++++.+. ..+.|.||++|| |++
T Consensus 51 ~r~liVtd~~~~~~--~g~~~~v~~~L~g~~~~~f~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG-Gsv 118 (408)
T 1oj7_A 51 ARVLITYGGGSVKK--TGVLDQVLDALKGMDVLEFGGIEPNP----AYETLMNAVKLVR-----EQKVTFLLAVGG-GSV 118 (408)
T ss_dssp CEEEEEECSSHHHH--HSHHHHHHHHTTTSEEEEECCCCSSC----BHHHHHHHHHHHH-----HHTCCEEEEEES-HHH
T ss_pred CEEEEEECCchhhh--ccHHHHHHHHhCCCEEEEeCCcCCCc----CHHHHHHHHHHHH-----HcCCCEEEEeCC-chH
Confidence 78888887553211 11567777777511111122222222 2233444444332 135589999999 888
Q ss_pred HHHHHHhhhcccC---------------CCCCCCcEEEecC--CCCcchh
Q 013013 161 GWVLGSVGELNKQ---------------GREPVPPVAIIPL--GTGNDLS 193 (451)
Q Consensus 161 ~~Vln~L~~~~~~---------------~~~~~~plgiIPl--GTgNDfA 193 (451)
..+...+.-.... .....+|+..||. |||-...
T Consensus 119 iD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTagtgSevt 168 (408)
T 1oj7_A 119 LDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESN 168 (408)
T ss_dssp HHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSSCGGGS
T ss_pred HHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCchhHHhC
Confidence 8887776543110 0125689999998 6765544
No 24
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=65.03 E-value=12 Score=37.62 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=49.4
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
++++||..+..-. ...+++.+.|.. .+ +.+....+.+ .....+++++.+. ..+.|.||++|| |+
T Consensus 53 ~r~liVtd~~~~~----~~~~~v~~~L~~-g~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~IIavGG-Gs 117 (387)
T 3uhj_A 53 KRALVLIDRVLFD----ALSERIGKSCGD-SLDIRFERFGGEC----CTSEIERVRKVAI-----EHGSDILVGVGG-GK 117 (387)
T ss_dssp SEEEEEECTTTHH----HHHHHC-------CCEEEEEECCSSC----SHHHHHHHHHHHH-----HHTCSEEEEESS-HH
T ss_pred CEEEEEECchHHH----HHHHHHHHHHHc-CCCeEEEEcCCCC----CHHHHHHHHHHHh-----hcCCCEEEEeCC-cH
Confidence 7889998876542 356777777765 32 2222233322 1233444444332 135689999999 99
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecC
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPL 186 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPl 186 (451)
+..+...+.-. ..+|+..||.
T Consensus 118 ~~D~AK~iA~~------~~~p~i~IPT 138 (387)
T 3uhj_A 118 TADTAKIVAID------TGARIVIAPT 138 (387)
T ss_dssp HHHHHHHHHHH------TTCEEEECCS
T ss_pred HHHHHHHHHHh------cCCCEEEecC
Confidence 99888887643 4689999998
No 25
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=64.20 E-value=47 Score=29.82 Aligned_cols=81 Identities=17% Similarity=0.252 Sum_probs=53.2
Q ss_pred CCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhHHHHHHHhhhc
Q 013013 92 GGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGEL 170 (451)
Q Consensus 92 G~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv~~Vln~L~~~ 170 (451)
|+..-....++....|....+ ||+.+...+ +.+....++++++.+ ..-...|.++||.+-+.-++.++..
T Consensus 21 GS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaH----R~p~~l~~~~~~a~~----~g~~ViIa~AG~aa~LpgvvA~~t~- 91 (183)
T 1o4v_A 21 GSDSDLPVMKQAAEILEEFGIDYEITIVSAH----RTPDRMFEYAKNAEE----RGIEVIIAGAGGAAHLPGMVASITH- 91 (183)
T ss_dssp SCGGGHHHHHHHHHHHHHTTCEEEEEECCTT----TCHHHHHHHHHHTTT----TTCCEEEEEEESSCCHHHHHHHHCS-
T ss_pred ccHHHHHHHHHHHHHHHHcCCCeEEEEEccc----CCHHHHHHHHHHHHh----CCCcEEEEecCcccccHHHHHhccC-
Confidence 443334466666666765544 888776544 356777888876531 1223578889999999999999853
Q ss_pred ccCCCCCCCcEEEecCCCC
Q 013013 171 NKQGREPVPPVAIIPLGTG 189 (451)
Q Consensus 171 ~~~~~~~~~plgiIPlGTg 189 (451)
.|+--+|.-++
T Consensus 92 --------~PVIgVP~~~~ 102 (183)
T 1o4v_A 92 --------LPVIGVPVKTS 102 (183)
T ss_dssp --------SCEEEEEECCT
T ss_pred --------CCEEEeeCCCC
Confidence 56666666554
No 26
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=63.89 E-value=17 Score=36.53 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=54.8
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEe---ecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSE---VKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~---~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (451)
++++||..+.+-... .+.+++...|.... +++.+ ..|.+ .....+++++.+. ..+.|.||++||
T Consensus 44 ~r~liVtd~~~~~~~--g~~~~v~~~L~~~g-~~~~~f~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG- 110 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKN--GVYDQVVDSLKKHG-IEWVEVSGVKPNP----VLSKVHEAVEVAK-----KEKVEAVLGVGG- 110 (407)
T ss_dssp CEEEEEECSSHHHHS--SHHHHHHHHHHHTT-CEEEEECCCCSSC----BHHHHHHHHHHHH-----HTTCSEEEEEES-
T ss_pred CeEEEEECchHHhhc--cHHHHHHHHHHHcC-CeEEEecCccCCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 688888864332111 15667777776432 23222 22222 1233444444332 245689999998
Q ss_pred hhHHHHHHHhhhccc------------CCCCCCCcEEEecC--CCCcchh
Q 013013 158 GTVGWVLGSVGELNK------------QGREPVPPVAIIPL--GTGNDLS 193 (451)
Q Consensus 158 GTv~~Vln~L~~~~~------------~~~~~~~plgiIPl--GTgNDfA 193 (451)
|++..+.-.+.-... ......+|+..||. |||--..
T Consensus 111 GsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgSevt 160 (407)
T 1vlj_A 111 GSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISATGTEMN 160 (407)
T ss_dssp HHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCSSCGGGS
T ss_pred hhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCcchhhc
Confidence 888888777654210 00125789999997 5554433
No 27
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=63.24 E-value=7.4 Score=38.79 Aligned_cols=84 Identities=17% Similarity=0.231 Sum_probs=50.9
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
.++++||..+.. ..+.+++.+.|.. .+.+....|.. .....++.++.+. ..+.|.||++|| |+
T Consensus 37 ~~rvliVtd~~~-----~~~~~~v~~~L~~--~~~f~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG-Gs 99 (364)
T 3iv7_A 37 SAKVMVIAGERE-----MSIAHKVASEIEV--AIWHDEVVMHV----PIEVAERARAVAT-----DNEIDLLVCVGG-GS 99 (364)
T ss_dssp CSSEEEECCGGG-----HHHHHHHTTTSCC--SEEECCCCTTC----BHHHHHHHHHHHH-----HTTCCEEEEEES-HH
T ss_pred CCEEEEEECCCH-----HHHHHHHHHHcCC--CEEEcceecCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC-cH
Confidence 357888877642 2355677776763 22222333322 1233444444332 246689999999 89
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecC
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPL 186 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPl 186 (451)
+..+.-.+.-. ..+|+..||.
T Consensus 100 ~iD~aK~iA~~------~~~P~i~IPT 120 (364)
T 3iv7_A 100 TIGLAKAIAMT------TALPIVAIPT 120 (364)
T ss_dssp HHHHHHHHHHH------HCCCEEEEEC
T ss_pred HHHHHHHHHhc------cCCCEEEEcC
Confidence 98888877653 4588999997
No 28
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=62.54 E-value=48 Score=29.55 Aligned_cols=88 Identities=16% Similarity=0.160 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhH
Q 013013 82 PMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (451)
Q Consensus 82 ~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv 160 (451)
++.||.=..|- ....++....|....+ |++.+...+. .+....++++++.+ ..-...|.++|+.+-+
T Consensus 9 ~V~IimgS~SD----~~v~~~a~~~L~~~gi~~ev~V~SaHR----~p~~~~~~~~~a~~----~g~~ViIa~AG~aa~L 76 (174)
T 3lp6_A 9 RVGVIMGSDSD----WPVMADAAAALAEFDIPAEVRVVSAHR----TPEAMFSYARGAAA----RGLEVIIAGAGGAAHL 76 (174)
T ss_dssp SEEEEESCGGG----HHHHHHHHHHHHHTTCCEEEEECCTTT----CHHHHHHHHHHHHH----HTCCEEEEEEESSCCH
T ss_pred eEEEEECcHHh----HHHHHHHHHHHHHcCCCEEEEEECCCC----CHHHHHHHHHHHHh----CCCCEEEEecCchhhh
Confidence 46666643332 3456666666665444 8888765543 56778888776531 1233578899999999
Q ss_pred HHHHHHhhhcccCCCCCCCcEEEecCCCCc
Q 013013 161 GWVLGSVGELNKQGREPVPPVAIIPLGTGN 190 (451)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~plgiIPlGTgN 190 (451)
.-++.++.. .|+--+|.-+++
T Consensus 77 pgvvA~~t~---------~PVIgVP~~~~~ 97 (174)
T 3lp6_A 77 PGMVAAATP---------LPVIGVPVPLGR 97 (174)
T ss_dssp HHHHHHHCS---------SCEEEEEECCSS
T ss_pred HHHHHhccC---------CCEEEeeCCCCC
Confidence 999999853 455555665543
No 29
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=60.38 E-value=43 Score=29.55 Aligned_cols=87 Identities=17% Similarity=0.223 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhH
Q 013013 82 PMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (451)
Q Consensus 82 ~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv 160 (451)
++.||.=..|- ....++....|....+ ||+.+...+. .+....++++++.+ ..-...|.++|+.+-+
T Consensus 5 ~V~Iimgs~SD----~~v~~~a~~~l~~~gi~~ev~V~SaHR----~p~~~~~~~~~a~~----~g~~ViIa~AG~aa~L 72 (163)
T 3ors_A 5 KVAVIMGSSSD----WKIMQESCNMLDYFEIPYEKQVVSAHR----TPKMMVQFASEARE----RGINIIIAGAGGAAHL 72 (163)
T ss_dssp CEEEEESCGGG----HHHHHHHHHHHHHTTCCEEEEECCTTT----SHHHHHHHHHHTTT----TTCCEEEEEEESSCCH
T ss_pred eEEEEECcHHH----HHHHHHHHHHHHHcCCCEEEEEECCcC----CHHHHHHHHHHHHh----CCCcEEEEECCchhhh
Confidence 45566533332 3455666666655444 8888765543 56778888876531 1123578889999999
Q ss_pred HHHHHHhhhcccCCCCCCCcEEEecCCCC
Q 013013 161 GWVLGSVGELNKQGREPVPPVAIIPLGTG 189 (451)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~plgiIPlGTg 189 (451)
.-++.++.. .|+--+|.-++
T Consensus 73 pgvvA~~t~---------~PVIgVP~~~~ 92 (163)
T 3ors_A 73 PGMVASLTT---------LPVIGVPIETK 92 (163)
T ss_dssp HHHHHHHCS---------SCEEEEEECCT
T ss_pred HHHHHhccC---------CCEEEeeCCCC
Confidence 999999853 45555565554
No 30
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=59.09 E-value=39 Score=33.67 Aligned_cols=93 Identities=15% Similarity=0.101 Sum_probs=53.7
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEe-ecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSE-VKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~-~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
++++||.++.... +.+++.+.|.... +++.. .-|...-.......+++.+.+.+. .....+.||++|| |+
T Consensus 44 ~rvlIVtd~~v~~-----~~~~v~~~L~~~g-~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~--~~~r~d~IIavGG-Gs 114 (368)
T 3qbe_A 44 HKVAVVHQPGLAE-----TAEEIRKRLAGKG-VDAHRIEIPDAEAGKDLPVVGFIWEVLGRI--GIGRKDALVSLGG-GA 114 (368)
T ss_dssp SEEEEEECGGGHH-----HHHHHHHHHHHTT-CEEEEEECCSGGGGGBHHHHHHHHHHHHHH--TCCTTCEEEEEES-HH
T ss_pred CEEEEEECccHHH-----HHHHHHHHHHhcC-CcceEEEeCCCCCCCCHHHHHHHHHHHHHc--CCCCCcEEEEECC-hH
Confidence 7899999986542 3567777776543 33321 111111111223344444433211 1234678999998 99
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecC
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPL 186 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPl 186 (451)
+..+...+.... ...+|+..||.
T Consensus 115 v~D~ak~~Aa~~----~rgip~i~IPT 137 (368)
T 3qbe_A 115 ATDVAGFAAATW----LRGVSIVHLPT 137 (368)
T ss_dssp HHHHHHHHHHHG----GGCCEEEEEEC
T ss_pred HHHHHHHHHHHh----ccCCcEEEECC
Confidence 998888776432 25689999997
No 31
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=57.46 E-value=36 Score=29.85 Aligned_cols=69 Identities=19% Similarity=0.333 Sum_probs=47.6
Q ss_pred HHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhHHHHHHHhhhcccCCCC
Q 013013 98 ELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGELNKQGRE 176 (451)
Q Consensus 98 ~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~ 176 (451)
...++....|....+ ||+.+...+. .+....++++++. ....|.++|+.+-+--++.++..
T Consensus 13 ~v~~~a~~~l~~~gi~~dv~V~saHR----~p~~~~~~~~~a~-------~~ViIa~AG~aa~Lpgvva~~t~------- 74 (157)
T 2ywx_A 13 KIAEKAVNILKEFGVEFEVRVASAHR----TPELVEEIVKNSK-------ADVFIAIAGLAAHLPGVVASLTT------- 74 (157)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTT----CHHHHHHHHHHCC-------CSEEEEEEESSCCHHHHHHTTCS-------
T ss_pred HHHHHHHHHHHHcCCCeEEEEEcccC----CHHHHHHHHHhcC-------CCEEEEEcCchhhhHHHHHhccC-------
Confidence 455666666665444 8888765543 5677788877642 25578899999999999988853
Q ss_pred CCCcEEEecC
Q 013013 177 PVPPVAIIPL 186 (451)
Q Consensus 177 ~~~plgiIPl 186 (451)
.|+--+|.
T Consensus 75 --~PVIgVP~ 82 (157)
T 2ywx_A 75 --KPVIAVPV 82 (157)
T ss_dssp --SCEEEEEE
T ss_pred --CCEEEecC
Confidence 45555666
No 32
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=55.22 E-value=1.1e+02 Score=27.07 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=53.9
Q ss_pred EEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhHH
Q 013013 83 MVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVG 161 (451)
Q Consensus 83 ~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv~ 161 (451)
+.||. |+..-....++....|....+ ||+.+...+ +.+..+.++++++.+ ..-...|.++|+.+-+.
T Consensus 8 V~Iim----gS~SD~~v~~~a~~~l~~~gi~~ev~V~SaH----Rtp~~l~~~~~~~~~----~g~~ViIa~AG~aa~Lp 75 (166)
T 3oow_A 8 VGVIM----GSKSDWSTMKECCDILDNLGIGYECEVVSAH----RTPDKMFDYAETAKE----RGLKVIIAGAGGAAHLP 75 (166)
T ss_dssp EEEEE----SSGGGHHHHHHHHHHHHHTTCEEEEEECCTT----TCHHHHHHHHHHTTT----TTCCEEEEEECSSCCHH
T ss_pred EEEEE----CcHHhHHHHHHHHHHHHHcCCCEEEEEEcCc----CCHHHHHHHHHHHHh----CCCcEEEEECCcchhhH
Confidence 55555 333223456666666665444 888776544 356667778776531 12244678899999999
Q ss_pred HHHHHhhhcccCCCCCCCcEEEecCCCC
Q 013013 162 WVLGSVGELNKQGREPVPPVAIIPLGTG 189 (451)
Q Consensus 162 ~Vln~L~~~~~~~~~~~~plgiIPlGTg 189 (451)
-++.++.. .|+--+|.-++
T Consensus 76 gvvA~~t~---------~PVIgVP~~~~ 94 (166)
T 3oow_A 76 GMVAAKTT---------LPVLGVPVKSS 94 (166)
T ss_dssp HHHHHTCS---------SCEEEEECCCT
T ss_pred HHHHhccC---------CCEEEeecCcC
Confidence 99998853 46655666544
No 33
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=54.69 E-value=78 Score=28.15 Aligned_cols=76 Identities=17% Similarity=0.171 Sum_probs=49.7
Q ss_pred eEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhH
Q 013013 82 PMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (451)
Q Consensus 82 ~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv 160 (451)
++.||.=..|- ....++....|....+ |++.+...+ +.+....++++++.+ ..-...|.++|+.+-+
T Consensus 14 ~V~IimGS~SD----~~v~~~a~~~L~~~Gi~~ev~V~SaH----R~p~~~~~~~~~a~~----~g~~ViIa~AG~aa~L 81 (174)
T 3kuu_A 14 KIAIVMGSKSD----WATMQFAADVLTTLNVPFHVEVVSAH----RTPDRLFSFAEQAEA----NGLHVIIAGNGGAAHL 81 (174)
T ss_dssp CEEEEESSGGG----HHHHHHHHHHHHHTTCCEEEEECCTT----TCHHHHHHHHHHTTT----TTCSEEEEEEESSCCH
T ss_pred cEEEEECcHHH----HHHHHHHHHHHHHcCCCEEEEEEccc----CCHHHHHHHHHHHHh----CCCcEEEEECChhhhh
Confidence 46666543332 3456666666665444 888876554 356778888876531 1223578889999999
Q ss_pred HHHHHHhhh
Q 013013 161 GWVLGSVGE 169 (451)
Q Consensus 161 ~~Vln~L~~ 169 (451)
.-++.++..
T Consensus 82 pgvvA~~t~ 90 (174)
T 3kuu_A 82 PGMLAAKTL 90 (174)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHhccC
Confidence 999998853
No 34
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=53.23 E-value=27 Score=34.26 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=53.9
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
.++++|+.++..... ..+++...|.... ..+.+....+ -.......+++.+.+.+ ......+.||++|| |+
T Consensus 26 ~~~~livtd~~v~~~----~~~~v~~~L~~~~-~~~~~~~~~e-~~k~~~~v~~~~~~~~~--~~~~r~d~iIavGG-Gs 96 (343)
T 3clh_A 26 KQKALIISDSIVAGL----HLPYLLERLKALE-VRVCVIESGE-KYKNFHSLERILNNAFE--MQLNRHSLMIALGG-GV 96 (343)
T ss_dssp SSCEEEEEEHHHHTT----THHHHHTTEECSC-EEEEEECSSG-GGCSHHHHHHHHHHHHH--TTCCTTCEEEEEES-HH
T ss_pred CCEEEEEECCcHHHH----HHHHHHHHHHhCC-cEEEEeCCCC-CCCCHHHHHHHHHHHHh--cCCCCCceEEEECC-hH
Confidence 478999998765432 4567777776542 2322221111 11122334444443321 01233478999988 88
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecC
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPL 186 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPl 186 (451)
+..+...+.-.. ...+|+..||.
T Consensus 97 v~D~ak~~A~~~----~rgip~i~IPT 119 (343)
T 3clh_A 97 ISDMVGFASSIY----FRGIDFINIPT 119 (343)
T ss_dssp HHHHHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHHHHh----ccCCCEEEeCC
Confidence 988888776432 25789999995
No 35
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=52.45 E-value=25 Score=34.60 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=54.2
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
++++||..+.+-. .+.+++...|....+ +.+....+.+ .....+++++.+. ..+.|.||++|| |+
T Consensus 32 ~~~livtd~~~~~----~~~~~v~~~L~~~g~~~~~~~~~ge~----~~~~v~~~~~~~~-----~~~~d~IIavGG-Gs 97 (370)
T 1jq5_A 32 NKTVVIADEIVWK----IAGHTIVNELKKGNIAAEEVVFSGEA----SRNEVERIANIAR-----KAEAAIVIGVGG-GK 97 (370)
T ss_dssp SEEEEEECHHHHH----HTHHHHHHHHHTTTCEEEEEECCSSC----BHHHHHHHHHHHH-----HTTCSEEEEEES-HH
T ss_pred CeEEEEEChHHHH----HHHHHHHHHHHHcCCeEEEEeeCCCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC-hH
Confidence 7899998876543 255677777765332 2212221111 1133444444322 135689999999 89
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecC--CCCc
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPL--GTGN 190 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPl--GTgN 190 (451)
+..+...+.-. ..+|+..||. |||-
T Consensus 98 v~D~aK~iA~~------~~~p~i~IPTTa~tgS 124 (370)
T 1jq5_A 98 TLDTAKAVADE------LDAYIVIVPTAASTDA 124 (370)
T ss_dssp HHHHHHHHHHH------HTCEEEEEESSCCSSC
T ss_pred HHHHHHHHHHh------cCCCEEEeccccCCCc
Confidence 99888887643 4589999998 4443
No 36
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=51.35 E-value=26 Score=34.36 Aligned_cols=86 Identities=9% Similarity=0.120 Sum_probs=53.1
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEee--cccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEV--KPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~--~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (451)
++++||..+..-. ...+++.+.|.... +++... .|.. .....+++ +.+ + ....|.||++|| |
T Consensus 35 ~~~livtd~~~~~----~~~~~v~~~L~~~g-~~~~~~~~~~~~----~~~~v~~~-~~~----~-~~~~d~IIavGG-G 98 (354)
T 3ce9_A 35 KRVSLYFGEGIYE----LFGETIEKSIKSSN-IEIEAVETVKNI----DFDEIGTN-AFK----I-PAEVDALIGIGG-G 98 (354)
T ss_dssp SEEEEEEETTHHH----HHHHHHHHHHHTTT-CEEEEEEEECCC----BHHHHHHH-HTT----S-CTTCCEEEEEES-H
T ss_pred CeEEEEECccHHH----HHHHHHHHHHHHcC-CeEEEEecCCCC----CHHHHHHH-HHh----h-hcCCCEEEEECC-h
Confidence 5889998875542 35577777776432 222111 2332 22334444 433 2 245688999998 8
Q ss_pred hHHHHHHHhhhcccCCCCCCCcEEEecC--CC
Q 013013 159 TVGWVLGSVGELNKQGREPVPPVAIIPL--GT 188 (451)
Q Consensus 159 Tv~~Vln~L~~~~~~~~~~~~plgiIPl--GT 188 (451)
++..+...+.-. ..+|+..||. ||
T Consensus 99 sv~D~aK~vA~~------~~~p~i~IPTT~~t 124 (354)
T 3ce9_A 99 KAIDAVKYMAFL------RKLPFISVPTSTSN 124 (354)
T ss_dssp HHHHHHHHHHHH------HTCCEEEEESCCSS
T ss_pred HHHHHHHHHHhh------cCCCEEEecCcccC
Confidence 998888887642 4689999998 55
No 37
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=48.62 E-value=95 Score=27.48 Aligned_cols=76 Identities=11% Similarity=0.042 Sum_probs=48.6
Q ss_pred eEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhH
Q 013013 82 PMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (451)
Q Consensus 82 ~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv 160 (451)
++.||.= +..-....++....|....+ |++.+...+. .+....++++++.+ ..-...|.++|+.+-+
T Consensus 8 ~V~Iimg----S~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR----~p~~~~~~~~~a~~----~g~~ViIa~AG~aa~L 75 (169)
T 3trh_A 8 FVAILMG----SDSDLSTMETAFTELKSLGIPFEAHILSAHR----TPKETVEFVENADN----RGCAVFIAAAGLAAHL 75 (169)
T ss_dssp EEEEEES----CGGGHHHHHHHHHHHHHTTCCEEEEECCTTT----SHHHHHHHHHHHHH----TTEEEEEEEECSSCCH
T ss_pred cEEEEEC----cHHhHHHHHHHHHHHHHcCCCEEEEEEcccC----CHHHHHHHHHHHHh----CCCcEEEEECChhhhh
Confidence 3555553 33223456666666665444 8888765543 56777888776531 1123468889999999
Q ss_pred HHHHHHhhh
Q 013013 161 GWVLGSVGE 169 (451)
Q Consensus 161 ~~Vln~L~~ 169 (451)
.-++.++..
T Consensus 76 pgvvA~~t~ 84 (169)
T 3trh_A 76 AGTIAAHTL 84 (169)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHhcCC
Confidence 999998853
No 38
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=48.32 E-value=44 Score=34.12 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=54.9
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
++++||..+.+-. .+.+++...|....+ +.+.+....+ .....+++++.+ ++ ..|.||++|| |+
T Consensus 92 ~rvlIVtd~~~~~----~~~~~v~~~L~~~gi~~~~~~~~ge~----~~~~v~~~~~~~----~~--~~D~IIAvGG-GS 156 (450)
T 1ta9_A 92 KSAVVLADQNVWN----ICANKIVDSLSQNGMTVTKLVFGGEA----SLVELDKLRKQC----PD--DTQVIIGVGG-GK 156 (450)
T ss_dssp SEEEEEEEHHHHH----HTHHHHHHHHHHTTCEEEEEEECSCC----CHHHHHHHHTTS----CT--TCCEEEEEES-HH
T ss_pred CEEEEEECccHHH----HHHHHHHHHHHHCCCeEEEEeeCCCC----CHHHHHHHHHHH----hh--CCCEEEEeCC-cH
Confidence 4889998875543 245667776754322 2112222211 123455555443 23 6689999998 89
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecC--CCCcch
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDL 192 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPl--GTgNDf 192 (451)
+..+...+.-. ..+|+..||. |||--.
T Consensus 157 viD~AK~iA~~------~giP~I~IPTTAgtgSev 185 (450)
T 1ta9_A 157 TMDSAKYIAHS------MNLPSIICPTTASSDAAT 185 (450)
T ss_dssp HHHHHHHHHHH------TTCCEEEEESSCSCSCTT
T ss_pred HHHHHHHHHHh------cCCCEEEEeCCCccCccc
Confidence 99888887643 4689999998 444433
No 39
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=46.57 E-value=1e+02 Score=27.53 Aligned_cols=86 Identities=20% Similarity=0.228 Sum_probs=54.2
Q ss_pred CCCe-EEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCC-CcEEEEEc
Q 013013 79 PEAP-MVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQ-KMRIVVAG 155 (451)
Q Consensus 79 ~~~~-~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~-~~~Ivv~G 155 (451)
.++| +.||+=..|- ....++....|....+ |++.+...+. .+..+.++++++. .++ ...|.++|
T Consensus 20 ~mkp~V~IimGS~SD----~~v~~~a~~~L~~~gI~~e~~V~SAHR----tp~~l~~~~~~a~-----~~g~~ViIa~AG 86 (181)
T 4b4k_A 20 HMKSLVGVIMGSTSD----WETMKYACDILDELNIPYEKKVVSAHR----TPDYMFEYAETAR-----ERGLKVIIAGAG 86 (181)
T ss_dssp --CCSEEEEESSGGG----HHHHHHHHHHHHHTTCCEEEEECCTTT----SHHHHHHHHHHTT-----TTTCCEEEEEEC
T ss_pred CCCccEEEEECCHhH----HHHHHHHHHHHHHcCCCeeEEEEcccc----ChHHHHHHHHHHH-----hcCceEEEEecc
Confidence 3445 4566644433 3466677777776555 8888765543 5566778887653 223 34678899
Q ss_pred CchhHHHHHHHhhhcccCCCCCCCcEEEecC
Q 013013 156 GDGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (451)
Q Consensus 156 GDGTv~~Vln~L~~~~~~~~~~~~plgiIPl 186 (451)
|.+-+--++.++. ..|+--+|.
T Consensus 87 ~aahLpGvvAa~T---------~~PVIGVPv 108 (181)
T 4b4k_A 87 GAAHLPGMVAAKT---------NLPVIGVPV 108 (181)
T ss_dssp SSCCHHHHHHTTC---------CSCEEEEEC
T ss_pred ccccchhhHHhcC---------CCCEEEEec
Confidence 9999998887774 345555565
No 40
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=46.33 E-value=31 Score=33.91 Aligned_cols=91 Identities=18% Similarity=0.178 Sum_probs=52.3
Q ss_pred CCeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchh
Q 013013 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (451)
Q Consensus 80 ~~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (451)
.++++||.++... . ..+++.+.|. ..+ ++.. ...+ -.......+++.+.+.+ ......+.||++|| |+
T Consensus 28 ~~kvliVtd~~v~----~-~~~~v~~~L~-~~~-~~~~-~~ge-~~~~~~~v~~~~~~~~~--~~~~r~d~IIavGG-Gs 95 (348)
T 1ujn_A 28 AGPAALLFDRRVE----G-FAQEVAKALG-VRH-LLGL-PGGE-AAKSLEVYGKVLSWLAE--KGLPRNATLLVVGG-GT 95 (348)
T ss_dssp SSCEEEEEEGGGH----H-HHHHHHHHHT-CCC-EEEE-CCSG-GGSSHHHHHHHHHHHHH--HTCCTTCEEEEEES-HH
T ss_pred CCEEEEEECCcHH----H-HHHHHHHHhc-cCe-EEEE-CCCC-CCCCHHHHHHHHHHHHH--cCCCCCCEEEEECC-cH
Confidence 4789999986543 3 6667777665 222 2221 1111 11122334444443321 01234578999988 89
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEecC
Q 013013 160 VGWVLGSVGELNKQGREPVPPVAIIPL 186 (451)
Q Consensus 160 v~~Vln~L~~~~~~~~~~~~plgiIPl 186 (451)
+..+...+.... ...+|+..||.
T Consensus 96 v~D~ak~~A~~~----~rgip~i~IPT 118 (348)
T 1ujn_A 96 LTDLGGFVAATY----LRGVAYLAFPT 118 (348)
T ss_dssp HHHHHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHHHHh----ccCCCEEEecC
Confidence 998888876432 25789999996
No 41
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=45.74 E-value=41 Score=34.88 Aligned_cols=43 Identities=28% Similarity=0.197 Sum_probs=31.7
Q ss_pred CCCcEEEEEcCchhHHHHH---HHhhhcccCCCCCCCcEEEecCCCCcchh
Q 013013 146 RQKMRIVVAGGDGTVGWVL---GSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vl---n~L~~~~~~~~~~~~plgiIPlGTgNDfA 193 (451)
.+-+.++++|||||..-+. ..+.+. ..++++.-||-==-||+.
T Consensus 188 ~~Id~LvvIGGdgS~~~A~~L~e~~~~~-----g~~i~vVGIPkTIDNDl~ 233 (487)
T 2hig_A 188 LGVNILFTVGGDGTQRGALVISQEAKRR-----GVDISVFGVPKTIDNDLS 233 (487)
T ss_dssp HTCSEEEEEECHHHHHHHHHHHHHHHHH-----TCCCEEEEEECCTTSSCC
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHHHh-----CCCceEEeccccccCCCC
Confidence 3567999999999987433 222221 246899999999999997
No 42
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=44.96 E-value=1.2e+02 Score=26.56 Aligned_cols=65 Identities=11% Similarity=0.125 Sum_probs=43.9
Q ss_pred hHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhcc-CCCcEEEEEcCchhHHHHHHHhhh
Q 013013 97 PELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDT-RQKMRIVVAGGDGTVGWVLGSVGE 169 (451)
Q Consensus 97 ~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~-~~~~~Ivv~GGDGTv~~Vln~L~~ 169 (451)
....++....|....+ |++.+...+ +.+....++++++. +. .-...|.++|+.+-+.-++.++..
T Consensus 15 ~~v~~~a~~~l~~~gi~~ev~V~saH----R~p~~~~~~~~~a~----~~~~~~ViIa~AG~aa~LpgvvA~~t~ 81 (159)
T 3rg8_A 15 MGHAEKIASELKTFGIEYAIRIGSAH----KTAEHVVSMLKEYE----ALDRPKLYITIAGRSNALSGFVDGFVK 81 (159)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCTT----TCHHHHHHHHHHHH----TSCSCEEEEEECCSSCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEccc----CCHHHHHHHHHHhh----hcCCCcEEEEECCchhhhHHHHHhccC
Confidence 3456666666665544 888776544 35677788877653 11 123467888999999999999863
No 43
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=40.53 E-value=42 Score=32.86 Aligned_cols=96 Identities=11% Similarity=0.101 Sum_probs=49.9
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCeeEEEeecccchhccchhHHHHHHhccchhhhccCCCcEEEEEcCchhH
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTv 160 (451)
++++||.++... ....+++...| ....+++.+....+ -.......+++.+.+.+ ......+.||++|| |++
T Consensus 32 ~~~liVtd~~~~----~~~~~~v~~~L-~~g~~~~~~~~~~e-~~p~~~~v~~~~~~~~~--~~~~r~d~iIavGG-Gsv 102 (354)
T 1xah_A 32 DQSFLLIDEYVN----QYFANKFDDIL-SYENVHKVIIPAGE-KTKTFEQYQETLEYILS--HHVTRNTAIIAVGG-GAT 102 (354)
T ss_dssp SCEEEEEEHHHH----HHHHHHHC-------CEEEEEECSGG-GGCSHHHHHHHHHHHHT--TCCCTTCEEEEEES-HHH
T ss_pred CeEEEEECCcHH----HHHHHHHHHHH-hcCCeEEEEECCCC-CCCCHHHHHHHHHHHHH--cCCCCCceEEEECC-hHH
Confidence 788999886432 22556666666 43212322221111 01122334444443321 01222378999998 899
Q ss_pred HHHHHHhhhcccCCCCCCCcEEEecC--CCC
Q 013013 161 GWVLGSVGELNKQGREPVPPVAIIPL--GTG 189 (451)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~plgiIPl--GTg 189 (451)
..+...+.-.. ...+|+..||. +|+
T Consensus 103 ~D~ak~vA~~~----~rgip~i~IPTT~~a~ 129 (354)
T 1xah_A 103 GDFAGFVAATL----LRGVHFIQVPTTILAH 129 (354)
T ss_dssp HHHHHHHHHHB----TTCCEEEEEECSTTHH
T ss_pred HHHHHHHHHHh----ccCCCEEEECCccccc
Confidence 98888876432 36789999998 455
No 44
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=39.80 E-value=93 Score=30.32 Aligned_cols=40 Identities=30% Similarity=0.281 Sum_probs=31.8
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchh
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfA 193 (451)
.+-+.++++|||||..-+ +.|.+ ..+|+.-||-==-||++
T Consensus 93 ~~Id~LvvIGGdgS~~~a-~~L~~-------~~i~vvgiPkTIDNDl~ 132 (320)
T 1pfk_A 93 RGIDALVVIGGDGSYMGA-MRLTE-------MGFPCIGLPGTIDNDIK 132 (320)
T ss_dssp TTCCEEEEEECHHHHHHH-HHHHH-------TTCCEEEEEBCTTCCCT
T ss_pred cCCCEEEEECCCchHHHH-HHHHh-------hCCCEEEEeccccCCCC
Confidence 456789999999998754 44443 35889999999999998
No 45
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=36.11 E-value=5.7 Score=33.51 Aligned_cols=32 Identities=9% Similarity=-0.003 Sum_probs=26.6
Q ss_pred eeehhccCcce-eEecccccccccccccchhhh
Q 013013 17 IDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (451)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~ 48 (451)
++..+..|..| |||..|..|+-.++.+||...
T Consensus 74 i~~~~~~~~~VlVHC~~G~sRS~~~v~ayLm~~ 106 (144)
T 3s4e_A 74 IEEAKRKDGVVLVHSNAGVSRAAAIVIGFLMNS 106 (144)
T ss_dssp HHHHHHTTCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHH
Confidence 34556677778 999999999999999999863
No 46
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=36.04 E-value=1e+02 Score=30.63 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=29.2
Q ss_pred CCcEEEEEcCchhHHHHHHHhhhcccC------------CCCCCCcEEEecC--CCCcch
Q 013013 147 QKMRIVVAGGDGTVGWVLGSVGELNKQ------------GREPVPPVAIIPL--GTGNDL 192 (451)
Q Consensus 147 ~~~~Ivv~GGDGTv~~Vln~L~~~~~~------------~~~~~~plgiIPl--GTgNDf 192 (451)
..|.||++|| |++..+.-.+.-.-.. ...+.+|+..||. |||--.
T Consensus 109 ~~D~IIavGG-GS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagtgSev 167 (375)
T 3rf7_A 109 LPVSVVGLGG-GSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTVSGTGAEA 167 (375)
T ss_dssp CCSEEEEEES-HHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESSCSSCTTT
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCCCccchhh
Confidence 3789999999 8888877776432110 0123689999996 444433
No 47
>2j16_A SDP-1, tyrosine-protein phosphatase YIL113W; hydrolase, hypothetical protein; 2.7A {Saccharomyces cerevisiae} PDB: 2j17_A* 2j16_B
Probab=35.95 E-value=5.9 Score=35.46 Aligned_cols=31 Identities=10% Similarity=-0.115 Sum_probs=26.1
Q ss_pred eehhccCcce-eEecccccccccccccchhhh
Q 013013 18 DSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (451)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~ 48 (451)
+..+..|..| |||..|..|+..++.+||...
T Consensus 111 ~~~~~~g~~VLVHC~~G~sRS~tvv~ayLm~~ 142 (182)
T 2j16_A 111 HAATTKREKILIHAQCGLSRSATLIIAYIMKY 142 (182)
T ss_dssp HHHHHTTCCEEEEESSCCSHHHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEECCCCCChHHHHHHHHHHHH
Confidence 4555667778 999999999999999999864
No 48
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=34.37 E-value=92 Score=30.35 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=31.5
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchh
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfA 193 (451)
.+-+.++++|||||..-+ +.|.+ ..+|+.-||-==-||++
T Consensus 92 ~~Id~LvvIGGdgS~~~a-~~L~~-------~~i~vvgiPkTIDNDl~ 131 (319)
T 1zxx_A 92 HGIDAVVVIGGDGSYHGA-LQLTR-------HGFNSIGLPGTIDNDIP 131 (319)
T ss_dssp TTCCEEEEEECHHHHHHH-HHHHH-------TTCCEEEEEEETTCCCT
T ss_pred hCCCEEEEECCchHHHHH-HHHHH-------hCCCEEEEeecccCCCC
Confidence 456789999999998654 34443 35889999999999997
No 49
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=34.15 E-value=6.8 Score=33.97 Aligned_cols=31 Identities=3% Similarity=-0.247 Sum_probs=25.6
Q ss_pred eehhccCcce-eEecccccccccccccchhhh
Q 013013 18 DSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (451)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~ 48 (451)
+..+..|..| |||..|..|+..++.+||...
T Consensus 81 ~~~~~~~~~VlVHC~~G~sRS~~vv~ayLm~~ 112 (161)
T 3emu_A 81 IRSIQRKEGVLIISGTGVNKAPAIVIAFLMYY 112 (161)
T ss_dssp HHHHHTTCEEEEEESSSSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHH
Confidence 4555567777 999999999999999999864
No 50
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A
Probab=33.17 E-value=6.7 Score=32.94 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=26.2
Q ss_pred eeehhccCcce-eEecccccccccccccchhhh
Q 013013 17 IDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (451)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~ 48 (451)
++..+..|..| |||..|..|+-.++.+||...
T Consensus 74 i~~~~~~~~~VlVHC~~G~~RS~~~~~aylm~~ 106 (144)
T 3ezz_A 74 IDAVKDCRGRVLVHSQAGISRSATICLAYLMMK 106 (144)
T ss_dssp HHHHHHTTCCEEEEESSSSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEECCCCCChhHHHHHHHHHHH
Confidence 34555667777 999999999999999999864
No 51
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=30.59 E-value=1.2e+02 Score=30.78 Aligned_cols=45 Identities=20% Similarity=0.198 Sum_probs=31.2
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhc-ccCCCCCCCcEEEecCCCCcchh
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGEL-NKQGREPVPPVAIIPLGTGNDLS 193 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~-~~~~~~~~~plgiIPlGTgNDfA 193 (451)
.+-+.++++|||||..-+. .|.+. .. ....+++.-||-==-||++
T Consensus 103 ~~Id~Lv~IGGdgS~~~A~-~L~~~~~~--~g~~i~vIGiPkTIDNDl~ 148 (419)
T 3hno_A 103 HDIGYFFYNGGGDSADTCL-KVSQLSGT--LGYPIQAIHVPKTVDNDLP 148 (419)
T ss_dssp TTEEEEEEEESHHHHHHHH-HHHHHHHH--TTCCCEEEEEECCTTCCCS
T ss_pred cCCCEEEEeCCchHHHHHH-HHHHHHHH--hCCCccEEEecccccCCCc
Confidence 3557899999999986443 33221 00 1245889999998999996
No 52
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}
Probab=29.06 E-value=8.6 Score=32.33 Aligned_cols=31 Identities=10% Similarity=0.041 Sum_probs=25.3
Q ss_pred eehhccCcce-eEecccccccccccccchhhh
Q 013013 18 DSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (451)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~ 48 (451)
+..+..|..| |||..|..|+-.++.+||...
T Consensus 75 ~~~~~~~~~VlVHC~~G~~RS~~~v~ayLm~~ 106 (145)
T 2nt2_A 75 SKAKKHGSKCLVHSKMGVSRSASTVIAYAMKE 106 (145)
T ss_dssp HHHHHTTCEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCchHHHHHHHHHHHH
Confidence 4445567778 999999999999999999863
No 53
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=28.15 E-value=1.2e+02 Score=29.46 Aligned_cols=44 Identities=27% Similarity=0.338 Sum_probs=33.5
Q ss_pred CCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchh---hhcCC
Q 013013 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (451)
Q Consensus 147 ~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfA---rsLg~ 198 (451)
+-+.++++|||||..-. ..|.+ ..+|+--||-==-||+. +++|.
T Consensus 93 ~Id~L~~IGGdgS~~~a-~~l~~-------~~i~vigiPkTIDNDl~~td~t~Gf 139 (319)
T 4a3s_A 93 GIEGLVVIGGDGSYMGA-KKLTE-------HGFPCVGVPGTIDNDIPGTDFTIGF 139 (319)
T ss_dssp TCCEEEEEECTTHHHHH-HHHHH-------TTCCEEEEEEETTCCCTTCSCCEEH
T ss_pred CCCEEEEeCCcHHHHHH-HHHhc-------cCCcEEEeeccccCCCCCCCCCCCH
Confidence 55789999999998754 34443 46889999999999997 44554
No 54
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=27.07 E-value=44 Score=29.39 Aligned_cols=59 Identities=19% Similarity=0.092 Sum_probs=31.6
Q ss_pred EEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchhhhcCCCCCCCCcHHHHHHHHHHHHh
Q 013013 153 VAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRAS 218 (451)
Q Consensus 153 v~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfArsLg~g~~~~~~~~~al~~~l~~i~ 218 (451)
.+|||.|-+ ++.-+.+.- ....|-+.+|=+|| ||+++..+-.. +......+..+++.+.
T Consensus 57 Gi~G~tt~~-~l~r~~~~v---~~~~Pd~vvi~~G~-ND~~~~~~~~~--~~~~~~~l~~ii~~~~ 115 (209)
T 4hf7_A 57 GISGQTSYQ-FLLRFREDV---INLSPALVVINAGT-NDVAENTGAYN--EDYTFGNIASMAELAK 115 (209)
T ss_dssp ECTTCCHHH-HHHHHHHHT---GGGCCSEEEECCCH-HHHTTSSSSCC--HHHHHHHHHHHHHHHH
T ss_pred ccCcccHHH-HHHHHHHHH---HhcCCCEEEEEeCC-CcCcccccccc--HHHHHHHHHHhhHHHh
Confidence 467886643 444443210 12457788998887 99987543210 1122334555665544
No 55
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=27.04 E-value=98 Score=34.84 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=32.5
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchh
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfA 193 (451)
.+-+.+|++|||||..- +..|.+.........+|+.-||-==-||++
T Consensus 687 ~~Id~LvvIGGdgS~~~-a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~ 733 (989)
T 3opy_A 687 YKFDGLIIIGGFEAFTA-LYELDAARAQYPIFNIPMCCLPATVSNNVP 733 (989)
T ss_dssp HTCSEEEEEESHHHHHH-HHHHHHHTTTCGGGCSCEEEEEBCSSCCCT
T ss_pred cCCCEEEEeCCchHHHH-HHHHHHHHhhCCCcCCcEEeccccccCCCC
Confidence 35679999999999854 345543211000136889999999999996
No 56
>3gw6_A Endo-N-acetylneuraminidase; chaperone, glycosidase, hydrolase; HET: TAM; 2.60A {Enterobacteria phage K1F}
Probab=26.98 E-value=21 Score=34.10 Aligned_cols=14 Identities=43% Similarity=0.769 Sum_probs=11.7
Q ss_pred cEEEEEcCchhHHH
Q 013013 149 MRIVVAGGDGTVGW 162 (451)
Q Consensus 149 ~~Ivv~GGDGTv~~ 162 (451)
-|||||||+||-+.
T Consensus 47 q~~i~~g~~~t~~~ 60 (275)
T 3gw6_A 47 QRIIFCGGEGTSST 60 (275)
T ss_dssp CEEEEESSSSSSTT
T ss_pred cEEEEecCCCCCCC
Confidence 49999999999653
No 57
>2x9a_A Attachment protein G3P; transmembrane, phage infection, phage recognition, HOST-VIRU interaction, virion; 2.47A {Enterobacteria phage IF1} PDB: 2x9b_A
Probab=26.34 E-value=16 Score=27.00 Aligned_cols=11 Identities=18% Similarity=0.099 Sum_probs=10.1
Q ss_pred EEEEEcCchhH
Q 013013 150 RIVVAGGDGTV 160 (451)
Q Consensus 150 ~Ivv~GGDGTv 160 (451)
-|+|++||||+
T Consensus 40 GViVg~~dgtv 50 (65)
T 2x9a_A 40 GIGIGYDNDTS 50 (65)
T ss_dssp EEEEEETTTTE
T ss_pred eEEEECCCCCE
Confidence 69999999997
No 58
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*
Probab=25.94 E-value=9.3 Score=32.25 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=25.2
Q ss_pred eehhccCcce-eEecccccccccccccchhhh
Q 013013 18 DSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (451)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~ 48 (451)
+..+..|..+ |||..|..|+-.++.+||...
T Consensus 83 ~~~~~~~~~vlVHC~~G~~Rsg~~~~a~l~~~ 114 (157)
T 3rgo_A 83 LKYQALGQCVYVHCKAGRSRSATMVAAYLIQV 114 (157)
T ss_dssp HHHHHTTCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEECCCCCChHHHHHHHHHHHH
Confidence 4445566677 999999999999999998864
No 59
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=25.74 E-value=1.1e+02 Score=34.20 Aligned_cols=47 Identities=13% Similarity=0.117 Sum_probs=32.3
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchh
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfA 193 (451)
.+-+.+|++|||||..-+ ..|.+.........+|+.-||-==-||++
T Consensus 661 ~~Id~LvvIGGdgS~~~a-~~L~~~~~~~~~~~i~vVGIPkTIDNDl~ 707 (941)
T 3opy_B 661 YGFDGLILVGGFEAFISL-HQLERARINYPSLRIPLVLIPATISNNVP 707 (941)
T ss_dssp TTCSEEEEEESHHHHHHH-HHHHHGGGTCGGGCSCEEEEEBCSSCCCT
T ss_pred cCCCEEEEeCCchHHHHH-HHHHHHHHhcCccCCcEEeeeccccCCCC
Confidence 466799999999997643 33433211000136899999999999997
No 60
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=25.64 E-value=1.4e+02 Score=32.70 Aligned_cols=47 Identities=26% Similarity=0.213 Sum_probs=32.1
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecCCCCcchh
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPlGTgNDfA 193 (451)
.+-+.+|++|||||..-+.. |.+.........+|+.-||-==-||++
T Consensus 488 ~~Id~LvvIGGdgS~~~a~~-L~~~~~~~~~~~i~vvgiPkTIDNDl~ 534 (762)
T 3o8l_A 488 FNIQGLVIIGGFEAYTGGLE-LMEGRKQFDELCIPFVVIPATVSNNVP 534 (762)
T ss_dssp TTCCCEEEEESHHHHHHHHH-HHHHHHHCSTTCSCEEEEEBCTTCCCT
T ss_pred cCCCEEEEeCCchHHHHHHH-HHHHHHhccccCCCEEeeccccCCCCC
Confidence 45678999999999875532 221100001236899999999999997
No 61
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}
Probab=25.45 E-value=9.9 Score=32.05 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=25.0
Q ss_pred eehhccCcce-eEecccccccccccccchhhh
Q 013013 18 DSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (451)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~ 48 (451)
+..+..+..| |||..|..|+-.++.+||...
T Consensus 77 ~~~~~~~~~VlVHC~~G~~RSg~~~~ayl~~~ 108 (149)
T 1zzw_A 77 EEAHQCGKGLLIHCQAGVSRSATIVIAYLMKH 108 (149)
T ss_dssp HHHHHTTCEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4444556777 999999999999999999853
No 62
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=25.40 E-value=1.4e+02 Score=31.50 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhc-ccCCCCCCCcEEEecCCCCcchh
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGEL-NKQGREPVPPVAIIPLGTGNDLS 193 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~-~~~~~~~~~plgiIPlGTgNDfA 193 (451)
.+-+.+|++|||||..-+. .|.+. .. ....+++.-||-==-||++
T Consensus 165 ~~Id~LvvIGGdgS~~~A~-~L~e~~~~--~~~~i~vIGiPkTIDNDl~ 210 (555)
T 2f48_A 165 NNLNAIIIIGGDDSNTNAA-ILAEYFKK--NGENIQVIGVPKTIDADLR 210 (555)
T ss_dssp TTCSEEEEEESHHHHHHHH-HHHHHHHH--TTCCCEEEEEEEETTCCCC
T ss_pred cCCCEEEEeCCCcHHHHHH-HHHHHHHH--hCCCCcEEEeccccCCCCC
Confidence 4567999999999976443 22221 11 1346899999998999996
No 63
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}
Probab=25.31 E-value=10 Score=32.76 Aligned_cols=31 Identities=16% Similarity=0.018 Sum_probs=25.1
Q ss_pred eehhccCcce-eEecccccccccccccchhhh
Q 013013 18 DSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (451)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~ 48 (451)
+..+..+..| |||..|..|+-.++.+||...
T Consensus 77 ~~~~~~~~~VlVHC~aG~~RSg~~~~ayLm~~ 108 (165)
T 1wrm_A 77 HECRLRGESCLVHCLAGVSRSVTLVIAYIMTV 108 (165)
T ss_dssp HHHHHTTCEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred HHHHHCCCeEEEECCCCCChhHHHHHHHHHHH
Confidence 3444557777 999999999999999999864
No 64
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}
Probab=24.89 E-value=10 Score=32.57 Aligned_cols=31 Identities=16% Similarity=0.048 Sum_probs=24.8
Q ss_pred eehhccCcce-eEecccccccccccccchhhh
Q 013013 18 DSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (451)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~ 48 (451)
+..+..|..| |||..|..|+-.++.+||...
T Consensus 83 ~~~~~~~~~VlVHC~aG~~RSg~~~~ayLm~~ 114 (164)
T 2hcm_A 83 EAAVRDGGSCLVYCKNGRSRSAAVCTAYLMRH 114 (164)
T ss_dssp HHHHHTTCEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCCCCchHHHHHHHHHHHH
Confidence 3444556777 999999999999999998864
No 65
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=24.10 E-value=2.9e+02 Score=27.91 Aligned_cols=84 Identities=20% Similarity=0.222 Sum_probs=54.8
Q ss_pred CeEEEEEcCCCCCCChhHHHHHHHHhhcccCe-eEEEeecccchhccchhHHHHHHhccchhhhccCCC--cEEEEEcCc
Q 013013 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQK--MRIVVAGGD 157 (451)
Q Consensus 81 ~~~lVivNP~SG~~~g~~~~~~l~~lL~~~~~-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~--~~Ivv~GGD 157 (451)
.++.||.=..|- ....++....|....+ |++.+...+ +.+....++++++. .+.. ..|.++||.
T Consensus 266 ~~V~Ii~gs~SD----~~~~~~a~~~l~~~gi~~~v~V~saH----R~p~~~~~~~~~~~-----~~g~~~viIa~AG~~ 332 (425)
T 2h31_A 266 CRVVVLMGSTSD----LGHCEKIKKACGNFGIPCELRVTSAH----KGPDETLRIKAEYE-----GDGIPTVFVAVAGRS 332 (425)
T ss_dssp CEEEEEESCGGG----HHHHHHHHHHHHHTTCCEEEEECCTT----TCHHHHHHHHHHHH-----TTCCCEEEEEECCSS
T ss_pred CeEEEEecCccc----HHHHHHHHHHHHHcCCceEEeeeecc----CCHHHHHHHHHHHH-----HCCCCeEEEEEcCcc
Confidence 456677643333 3455666666665444 888776544 35677888887653 2223 467888999
Q ss_pred hhHHHHHHHhhhcccCCCCCCCcEEEecC
Q 013013 158 GTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (451)
Q Consensus 158 GTv~~Vln~L~~~~~~~~~~~~plgiIPl 186 (451)
|.+.-|+.++.. .||--+|.
T Consensus 333 a~Lpgvva~~t~---------~PVIgvP~ 352 (425)
T 2h31_A 333 NGLGPVMSGNTA---------YPVISCPP 352 (425)
T ss_dssp CCHHHHHHHHCS---------SCEEECCC
T ss_pred cchHhHHhccCC---------CCEEEeeC
Confidence 999999999953 56666675
No 66
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1vhr_A* 1j4x_A*
Probab=23.08 E-value=13 Score=32.37 Aligned_cols=25 Identities=12% Similarity=0.015 Sum_probs=22.1
Q ss_pred Ccce-eEecccccccccccccchhhh
Q 013013 24 GLSG-MRIDKEDLRRKLSIPEYLRVA 48 (451)
Q Consensus 24 ~~~~-~~~~~~~~~~~~~~~~yl~~~ 48 (451)
|..| |||..|..|+-.++.+||...
T Consensus 115 ~~~VlVHC~~G~~RSg~~v~ayLm~~ 140 (183)
T 3f81_A 115 NGRVLVHCREGYSRSPTLVIAYLMMR 140 (183)
T ss_dssp TCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCcchHHHHHHHHHHHH
Confidence 6677 999999999999999999864
No 67
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens}
Probab=22.51 E-value=14 Score=32.82 Aligned_cols=31 Identities=13% Similarity=-0.078 Sum_probs=25.0
Q ss_pred eehhccCcce-eEecccccccccccccchhhh
Q 013013 18 DSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (451)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~ 48 (451)
+..+..|..| |||..|-.|+-.++.+||...
T Consensus 91 ~~~~~~~~~VLVHC~aG~sRS~~vv~ayLm~~ 122 (188)
T 2esb_A 91 HSVEMKQGRTLLHCAAGVSRSAALCLAYLMKY 122 (188)
T ss_dssp HHHHHTTCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCCCCchHHHHHHHHHHHH
Confidence 3444557777 999999999999999999764
No 68
>3cm3_A Late protein H1, dual specificity protein phosphatase; dual-specificity phosphatase, VH1, hydrolase; 1.32A {Vaccinia virus} PDB: 2rf6_A 2p4d_A
Probab=21.55 E-value=13 Score=32.44 Aligned_cols=32 Identities=13% Similarity=-0.021 Sum_probs=25.7
Q ss_pred eeehhccCcce-eEecccccccccccccchhhh
Q 013013 17 IDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (451)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~ 48 (451)
++..+..+..| |||..|-.|+-.++.+||...
T Consensus 101 i~~~~~~~~~VlVHC~aG~~RSg~~v~aylm~~ 133 (176)
T 3cm3_A 101 LSKCDQRNEPVLVHSAAGVNRSGAMILAYLMSK 133 (176)
T ss_dssp HHHHHHHTCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEECCcCCCHHHHHHHHHHHHH
Confidence 34455556677 999999999999999999864
No 69
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=21.46 E-value=1.3e+02 Score=28.35 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCchhHHHHHHHhhhcccCCCCCCCcEEEecC
Q 013013 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (451)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~Vln~L~~~~~~~~~~~~plgiIPl 186 (451)
...|.+|..|| +|+.|++. ...|.-+||.
T Consensus 224 ~~aDlvI~~gG-~T~~E~~~-----------~g~P~i~ip~ 252 (282)
T 3hbm_A 224 NESNKLIISAS-SLVNEALL-----------LKANFKAICY 252 (282)
T ss_dssp HTEEEEEEESS-HHHHHHHH-----------TTCCEEEECC
T ss_pred HHCCEEEECCc-HHHHHHHH-----------cCCCEEEEeC
Confidence 46678899999 99999872 3568888885
No 70
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens}
Probab=21.28 E-value=17 Score=33.30 Aligned_cols=31 Identities=19% Similarity=0.113 Sum_probs=25.3
Q ss_pred eehhccCcce-eEecccccccccccccchhhh
Q 013013 18 DSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (451)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~ 48 (451)
+..+..|..| |||..|..|+-.++.+||...
T Consensus 77 ~~~~~~~~~VLVHC~aG~sRSgtvv~AYLm~~ 108 (211)
T 2g6z_A 77 DCVREKGGKVLVHSEAGISRSPTICMAYLMKT 108 (211)
T ss_dssp HHHHHTTCCEEEEESSSSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEECCCCCCcHHHHHHHHHHHH
Confidence 4445567777 999999999999999999864
No 71
>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}
Probab=20.95 E-value=16 Score=33.49 Aligned_cols=27 Identities=11% Similarity=-0.041 Sum_probs=23.0
Q ss_pred ccCcce-eEecccccccccccccchhhh
Q 013013 22 GCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (451)
Q Consensus 22 ~~~~~~-~~~~~~~~~~~~~~~~yl~~~ 48 (451)
..+..| |||..|..|+-.++.+||...
T Consensus 137 ~~~~~VLVHC~aG~sRS~tvv~aYLm~~ 164 (219)
T 2y96_A 137 DDHSKILVHCVMGRSRSATLVLAYLMIH 164 (219)
T ss_dssp STTCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456667 999999999999999999864
No 72
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}
Probab=20.88 E-value=14 Score=31.16 Aligned_cols=29 Identities=10% Similarity=-0.067 Sum_probs=23.6
Q ss_pred ehhccCcce-eEecccccccccccccchhh
Q 013013 19 SIRGCGLSG-MRIDKEDLRRKLSIPEYLRV 47 (451)
Q Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~ 47 (451)
..+..+..| |||.-|..|+-.++.+||..
T Consensus 85 ~~~~~~~~vlvHC~aG~~RS~~~~~ayl~~ 114 (154)
T 2r0b_A 85 GSLQMGGKVLVHGNAGISRSAAFVIAYIME 114 (154)
T ss_dssp HHHHTTCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEcCCCCChHHHHHHHHHHH
Confidence 334556677 99999999999999999875
No 73
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A
Probab=20.19 E-value=15 Score=31.37 Aligned_cols=31 Identities=13% Similarity=-0.079 Sum_probs=24.7
Q ss_pred eehhccCcce-eEecccccccccccccchhhh
Q 013013 18 DSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (451)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~ 48 (451)
+..+..|..| |||..|..|+-.++.+||...
T Consensus 79 ~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~~ 110 (155)
T 2hxp_A 79 DEALSQNCGVLVHSLAGVSRSVTVTVAYLMQK 110 (155)
T ss_dssp HHHHHTTCEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHcCCcEEEECCCCCchhHHHHHHHHHHH
Confidence 3444456777 999999999999999998753
Done!