BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013019
(451 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|B Chain B, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|C Chain C, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|D Chain D, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|E Chain E, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|F Chain F, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|G Chain G, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|H Chain H, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1I41|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I43|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I48|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
Length = 445
Score = 537 bits (1383), Expect = e-153, Method: Compositional matrix adjust.
Identities = 262/311 (84%), Positives = 288/311 (92%), Gaps = 5/311 (1%)
Query: 124 DDIALVDGL----KNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVN 179
+D+ALV+ +NVQ ++L +K ASFL+SDGS+AIHAGERLGRGIVTDAITTPVVN
Sbjct: 25 EDVALVENETCNDQNVQFDSLPSMKY-ASFLNSDGSVAIHAGERLGRGIVTDAITTPVVN 83
Query: 180 TSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSAST 239
TSAYFF KT+ELIDFKEKRRASFEYGRYGNPTTVV+EEK+SALEGAEST++MASGM AST
Sbjct: 84 TSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLLMASGMCAST 143
Query: 240 VMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSL 299
VMLLALVPAGGHIVTTTDCYRKTRIFIET+LPKMGITATVIDPAD+ LE ALN V+L
Sbjct: 144 VMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNL 203
Query: 300 FFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFI 359
FFTESPTNPFLRCVD++LVS LCH+KGA+VCIDGTFATPLNQKAL+LGADLVLHSATKF+
Sbjct: 204 FFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFL 263
Query: 360 GGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR 419
GGHNDVLAG ISG KLV++IRNLHH+LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR
Sbjct: 264 GGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR 323
Query: 420 MAEILEAHPKV 430
MAEILEAHPKV
Sbjct: 324 MAEILEAHPKV 334
>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With
Pyridoximine-5'- Phosphate
Length = 398
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/275 (37%), Positives = 160/275 (58%), Gaps = 5/275 (1%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
+HAG++ T A++TP+ TS + F + + + Y R GNPTT +E+
Sbjct: 14 VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
K++ LE E+ + ASG+SA T LL L G HIV+ + Y T F+ +PK GI
Sbjct: 72 KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGXTHAFLSHSMPKFGINV 131
Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
+ +D A E + AA+ + + E+P NP L VD++ V+ + H++GA++ +D TF +
Sbjct: 132 SFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 395
P Q+ L LGAD+V+HS TK+I GH DV+ G I G + + Q R L + GG ++P
Sbjct: 191 PYXQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGXMSPFN 250
Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
A+L +RG+KTL +R+++ AL++A LE HP +
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSI 285
>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With S-Ethyl-Cysteine
Length = 398
Score = 192 bits (489), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 159/275 (57%), Gaps = 5/275 (1%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
+HAG++ T A++TP+ TS + F + + + Y R GNPTT +E+
Sbjct: 14 VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
K++ LE E+ + ASG+SA T LL L G HIV+ + Y T F+ +PK GI
Sbjct: 72 KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINV 131
Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
+ +D A E + AA+ + + E+P NP L VD++ V+ + H++GA++ +D TF +
Sbjct: 132 SFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 395
P Q+ L LGAD+V+HS T +I GH DV+ G I G + + Q R L + GG ++P
Sbjct: 191 PYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFN 250
Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
A+L +RG+KTL +R+++ AL++A LE HP +
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSI 285
>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Methionine Phosphinate
pdb|3JWB|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Norleucine
Length = 398
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 159/275 (57%), Gaps = 5/275 (1%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
+HAG++ T A++TP+ TS + F + + + Y R GNPTT +E+
Sbjct: 14 VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
K++ LE E+ + ASG+SA T LL L G HIV+ + Y T F+ +PK GI
Sbjct: 72 KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINV 131
Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
+ +D A E + AA+ + + E+P NP L VD++ V+ + H++GA++ +D TF +
Sbjct: 132 SFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 395
P Q+ L LGAD+V+HS T +I GH DV+ G I G + + Q R L + GG ++P
Sbjct: 191 PYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFN 250
Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
A+L +RG+KTL +R+++ AL++A LE HP +
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSI 285
>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii
Length = 398
Score = 191 bits (486), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 158/275 (57%), Gaps = 5/275 (1%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
+HAG++ T A++TP+ TS + F + + + Y R GNPTT +E+
Sbjct: 14 VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
K++ LE E+ + ASG+SA T LL L G HIV+ + Y T F+ +PK GI
Sbjct: 72 KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINV 131
Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
+D A E + AA+ + + E+P NP L VD++ V+ + H++GA++ +D TF +
Sbjct: 132 RFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 395
P Q+ L LGAD+V+HS T +I GH DV+ G I G + + Q R L + GG ++P
Sbjct: 191 PYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFN 250
Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
A+L +RG+KTL +R+++ AL++A LE HP +
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSI 285
>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii
L-Methionine-Lyase
Length = 398
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/275 (36%), Positives = 157/275 (57%), Gaps = 5/275 (1%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
+HAG++ T A++TP+ TS + F + + + Y R GNPTT +E+
Sbjct: 14 VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
K++ LE E+ + ASG+SA T LL L G HIV+ + Y T F+ +PK GI
Sbjct: 72 KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINV 131
Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
+D E + AA+ + + E+P NP L VD++ V+ + H++GA++ +D TF +
Sbjct: 132 RFVDAGKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 395
P Q+ L LGAD+V+HS T +I GH DV+ G I G + + Q R L + GG ++P
Sbjct: 191 PYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFN 250
Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
A+L +RG+KTL +R+++ AL++A LE HP +
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSI 285
>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|B Chain B, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|C Chain C, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|D Chain D, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
Length = 398
Score = 167 bits (424), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 146/261 (55%), Gaps = 3/261 (1%)
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
A+ PV T+ + F +A Y R NPT ++E +M++LEG E+ + +
Sbjct: 27 ALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 86
Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
ASGM A T L L+ G ++ Y T F+ + + G+ +D AD++ LEAA
Sbjct: 87 ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAA 146
Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
+ ++F ESP NP + D+ V+ + K GA V +D T+ TP Q+ L LGADLV
Sbjct: 147 MTPATRVIYF-ESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLV 205
Query: 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 409
+HSATK++ GH D+ AG + GS LV +IR L + G L+P+ A L++RG+KTL+LR
Sbjct: 206 VHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265
Query: 410 VQQQNSTALRMAEILEAHPKV 430
+ + + A +AE L P+V
Sbjct: 266 MDRHCANAQVLAEFLARQPQV 286
>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|B Chain B, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|C Chain C, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|D Chain D, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3NNP|A Chain A, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NNP|B Chain B, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NMY|A Chain A, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|B Chain B, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|C Chain C, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|D Chain D, Native Structure Of Xometc At Ph 9.0
Length = 400
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 152/280 (54%), Gaps = 17/280 (6%)
Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
+LAIH G+ T A+ P+ TS Y E FEY R NPT
Sbjct: 22 TLAIHGGQSPDPS--TGAVMPPIYATSTYAQSSPGE--------HQGFEYSRTHNPTRFA 71
Query: 215 VEEKMSALEGAESTVIMASGMSA-STVMLLALVPAGGHIVTTTDCYRKT-RIFIETVLPK 272
E ++ALEG ASGM+A STVM L+ AG H+V D Y T R+F
Sbjct: 72 YERCVAALEGGTRAFAFASGMAATSTVM--ELLDAGSHVVAMDDLYGGTFRLFERVRRRT 129
Query: 273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 332
G+ + +D D +AA+ + + + E+PTNP L+ VD+ ++ + K G + +D
Sbjct: 130 AGLDFSFVDLTDPAAFKAAIRADT-KMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVD 188
Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAG--SISGSGKLVTQIRNLHHVLGGA 390
TFA+P+ Q+ LSLGADLV+HSATK++ GH+D++ G + + +L Q+ L + +GG
Sbjct: 189 NTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGV 248
Query: 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
P ++L +RG+KTL LR++ AL +A+ LE HP +
Sbjct: 249 QGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAI 288
>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK3|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK4|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
Length = 398
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 145/261 (55%), Gaps = 3/261 (1%)
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
A+ PV T+ + F +A Y R NPT ++E +M++LEG E+ + +
Sbjct: 27 ALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 86
Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
ASGM A T L L+ G ++ Y T F+ + + G+ +D AD++ LEAA
Sbjct: 87 ASGMGAITSTLWTLLRPGDEVLLGNTLYGHTFAFLHHGIGEFGVKLRHVDMADLQALEAA 146
Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
+ ++F ESP NP + D+ V+ + K GA V +D T+ TP Q+ L LGADLV
Sbjct: 147 MTPATRVIYF-ESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLV 205
Query: 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 409
+HSAT ++ GH D+ AG + GS LV +IR L + G L+P+ A L++RG+KTL+LR
Sbjct: 206 VHSATXYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265
Query: 410 VQQQNSTALRMAEILEAHPKV 430
+ + + A +AE L P+V
Sbjct: 266 MDRHCANAQVLAEFLARQPQV 286
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1UKJ|A Chain A, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|B Chain B, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|C Chain C, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|D Chain D, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|2O7C|A Chain A, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|B Chain B, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|C Chain C, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|D Chain D, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
Length = 398
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 145/261 (55%), Gaps = 3/261 (1%)
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
A+ PV T+ + F +A Y R NPT ++E +M++LEG E+ + +
Sbjct: 27 ALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 86
Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
ASGM A T L L+ G ++ Y T F+ + + G+ +D AD++ LEAA
Sbjct: 87 ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAA 146
Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
+ ++F ESP NP + D+ V+ + K GA V +D T+ TP Q+ L LGADLV
Sbjct: 147 MTPATRVIYF-ESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLV 205
Query: 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 409
+HSAT ++ GH D+ AG + GS LV +IR L + G L+P+ A L++RG+KTL+LR
Sbjct: 206 VHSATXYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265
Query: 410 VQQQNSTALRMAEILEAHPKV 430
+ + + A +AE L P+V
Sbjct: 266 MDRHCANAQVLAEFLARQPQV 286
>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEL|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEM|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEO|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEP|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
Length = 389
Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 136/256 (53%), Gaps = 2/256 (0%)
Query: 176 PVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM 235
P+ TS + F T + D + Y R GNPT EE + ++EGA + SGM
Sbjct: 25 PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 236 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN 295
A + LA + G H++ Y T LP+ GI +ID +D+E ++AA N
Sbjct: 85 GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 296 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSA 355
+ + ESP NP + D+K ++ +CH++GA + +D TF +P K L LGAD+ LHS
Sbjct: 145 T-KMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSV 203
Query: 356 TKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQN 414
+K+I GH DV+ G S + + + + I+ G + P A+L RGMKTL +R+Q
Sbjct: 204 SKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHM 263
Query: 415 STALRMAEILEAHPKV 430
L++A+ LE H K+
Sbjct: 264 ENGLKVAKFLEQHEKI 279
>pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|B Chain B, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|C Chain C, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|D Chain D, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
Length = 414
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 131/230 (56%), Gaps = 2/230 (0%)
Query: 202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 261
+ Y RYGNPT V EE++ +EGA + ASGM+A L AL+ AG +V +
Sbjct: 73 YVYSRYGNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGS 132
Query: 262 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321
+ +LP+ G+ +D D+ E AL+ ++FF E+P+NP VD+ V++L
Sbjct: 133 CFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFF-ETPSNPMQSLVDIAAVTEL 191
Query: 322 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QI 380
H GA V +D FATPL Q+ LG D+V++S T I G VL G+I G + + +
Sbjct: 192 AHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTXHIDGQGRVLGGAILGDREYIDGPV 251
Query: 381 RNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
+ L G A++ A+++++G++TL +RVQ N++A R+AE L HP V
Sbjct: 252 QKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSV 301
>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|B Chain B, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|C Chain C, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|D Chain D, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3AEJ|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEM|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
Length = 389
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 135/256 (52%), Gaps = 2/256 (0%)
Query: 176 PVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM 235
P+ TS + F T + D + Y R GNPT EE + ++EGA + SGM
Sbjct: 25 PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 236 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN 295
A + LA + G H++ Y T LP+ GI +ID +D+E ++AA N
Sbjct: 85 GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 296 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSA 355
+ + ESP NP + D+K ++ +CH++GA + +D TF +P K L LGAD+ LHS
Sbjct: 145 T-KMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSV 203
Query: 356 TKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQN 414
+ +I GH DV+ G S + + + + I+ G + P A+L RGMKTL +R+Q
Sbjct: 204 SXYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHM 263
Query: 415 STALRMAEILEAHPKV 430
L++A+ LE H K+
Sbjct: 264 ENGLKVAKFLEQHEKI 279
>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5E|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5F|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
pdb|1E5F|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
Length = 404
Score = 158 bits (400), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 145/258 (56%), Gaps = 4/258 (1%)
Query: 176 PVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM 235
P+ TS + F + + + + + Y R GNPT +E K++ LE E+ V +SGM
Sbjct: 28 PIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVATSSGM 87
Query: 236 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN 295
A +L ++ AG H+++ Y T E L K GI I+ A ++ + N
Sbjct: 88 GAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPN 147
Query: 296 NVSLFFTESPTNPFLRCVDVKLVSDLCH-KKGAIVCIDGTFATPLNQKALSLGADLVLHS 354
++F E+P NP L+ +D++ V H ++G +V D TF +P+ + G D+V+HS
Sbjct: 148 TKIVYF-ETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHS 206
Query: 355 ATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQ 412
ATK+I GH DV+AG I G L+ QIR + + G ++P+ A+LI RG+ TL++R++
Sbjct: 207 ATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLNIRMKA 266
Query: 413 QNSTALRMAEILEAHPKV 430
++ A+++AE L++HP V
Sbjct: 267 ESENAMKVAEYLKSHPAV 284
>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
Length = 464
Score = 158 bits (399), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 149/261 (57%), Gaps = 11/261 (4%)
Query: 171 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230
DA++TP+ T+ FK+ + + ++Y R GNPT +E ++ L+ A+
Sbjct: 102 DAMSTPLYQTAT--FKQPSAI------ENGPYDYTRSGNPTRDALESLLAKLDKADRAFC 153
Query: 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 290
SGM+A + + L+ G IV D Y + + V+P+ G+ ++ ++ + A
Sbjct: 154 FTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAA 212
Query: 291 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 350
A+ L + ESPTNP + D++ +S++ H +GA+V +D + +P+ + L LGAD+
Sbjct: 213 AIGPQ-TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADI 271
Query: 351 VLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 409
V+HSATKFI GH+DV+AG ++ G KL ++ L + G L P +L +RG+KT+ LR
Sbjct: 272 VMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALR 331
Query: 410 VQQQNSTALRMAEILEAHPKV 430
+++Q A ++A L +HP+V
Sbjct: 332 IEKQQENARKIAMYLSSHPRV 352
>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|B Chain B, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|C Chain C, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|D Chain D, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|3COG|A Chain A, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|B Chain B, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|C Chain C, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|D Chain D, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
Length = 403
Score = 155 bits (391), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 159/276 (57%), Gaps = 13/276 (4%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
AIH G+ + + A+ P+ ++ FK+ A + + FEY R GNPT +E
Sbjct: 23 AIHVGQDPEQW-TSRAVVPPISLSTT--FKQGAP------GQHSGFEYSRSGNPTRNCLE 73
Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
+ ++AL+GA+ + ASG++A TV + L+ AG I+ D Y T + V + G+
Sbjct: 74 KAVAALDGAKYCLAFASGLAA-TVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLK 132
Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV-CIDGTF 335
+ +D + ++ LEAA+ L + E+PTNP + +D++ + + HK G I+ +D TF
Sbjct: 133 ISFVDCSKIKLLEAAITPET-KLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTF 191
Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPN 394
+P Q+ L+LGAD+ ++SATK++ GH+DV+ G +S L ++R L + LG +P
Sbjct: 192 MSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPI 251
Query: 395 AAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
YL RG+KTLH+R+++ + +A+ LE++P V
Sbjct: 252 DCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWV 287
>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase
pdb|3ELP|A Chain A, Structure Of Cystationine Gamma Lyase
pdb|3ELP|C Chain C, Structure Of Cystationine Gamma Lyase
pdb|3ELP|D Chain D, Structure Of Cystationine Gamma Lyase
Length = 410
Score = 155 bits (391), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 159/276 (57%), Gaps = 13/276 (4%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
AIH G+ + + A+ P+ ++ FK+ A + + FEY R GNPT +E
Sbjct: 27 AIHVGQDPEQ-WTSRAVVPPISLSTT--FKQGAP------GQHSGFEYSRSGNPTRNCLE 77
Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
+ ++AL+GA+ + ASG++A TV + L+ AG I+ D Y T + V + G+
Sbjct: 78 KAVAALDGAKYCLAFASGLAA-TVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLK 136
Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV-CIDGTF 335
+ +D + ++ LEAA+ L + E+PTNP + +D++ + + HK G I+ +D TF
Sbjct: 137 ISFVDCSKIKLLEAAITPE-TKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTF 195
Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPN 394
+P Q+ L+LGAD+ ++SATK++ GH+DV+ G +S L ++R L + LG +P
Sbjct: 196 MSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPI 255
Query: 395 AAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
YL RG+KTLH+R+++ + +A+ LE++P V
Sbjct: 256 DCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWV 291
>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QI6|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
Length = 392
Score = 147 bits (372), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 97/275 (35%), Positives = 144/275 (52%), Gaps = 11/275 (4%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
AIH+G R T A+ P+ +S + L R +EY R GNPT +E
Sbjct: 22 AIHSGYR--PDPATGAVNAPIYASSTFAQDGVGGL-------RGGYEYARTGNPTRTALE 72
Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
++A+E A +SGM+A+ L A++ G H+V D Y T I+ V +
Sbjct: 73 AALAAVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVE 132
Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
T + AD++ + AA+ L + E+PTNP L D+ ++ L A V +D TFA
Sbjct: 133 YTPVALADLDAVRAAIRPTT-RLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFA 191
Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNPNA 395
+P Q+ LSLGAD+VLHS T +IGGH+DV+ G+ ++ +L L + G P
Sbjct: 192 SPALQQPLSLGADVVLHSTTXYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFD 251
Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
AYL +RG+KTL LR+Q+ + A +AE L HP +
Sbjct: 252 AYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAI 286
>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|B Chain B, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|C Chain C, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|D Chain D, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
Length = 393
Score = 145 bits (365), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 148/275 (53%), Gaps = 18/275 (6%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
AIHAGE + V ++ P+ ++ + A I ++EY R NP +E
Sbjct: 12 AIHAGEHVD---VHGSVIEPISLSTTFKQSSPANPI-------GTYEYSRSQNPNRENLE 61
Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
++ALE A+ + +SG SA+T +L +P G H V+ D Y T + V G+
Sbjct: 62 RAVAALENAQYGLAFSSG-SATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE 120
Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGA----IVCID 332
+ + D+ L N L + E+PTNP L+ D++ V+DL K A I+ +D
Sbjct: 121 TSFTN--DLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVD 178
Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGAL 391
TF +P L+ GAD+V+HSATK+I GH+DV+ G ++ + K L +++ L + +G
Sbjct: 179 NTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIP 238
Query: 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEA 426
+P A+L RG+KTLHLRV+Q +A ++AE L A
Sbjct: 239 SPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAA 273
>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|B Chain B, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|C Chain C, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|D Chain D, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
Length = 386
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 136/262 (51%), Gaps = 16/262 (6%)
Query: 173 ITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232
+ P+ +S Y F F E R + +Y R GNPT VV+ ++ LEG V+
Sbjct: 23 VVPPIHLSSTYNFTG------FNEPR--AHDYSRRGNPTRDVVQRALAELEGGAGAVLTN 74
Query: 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAAL 292
+GMSA ++ + G +V DCY + +++ + +D D + L AAL
Sbjct: 75 TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAAL 134
Query: 293 NNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVL 352
L ESP+NP LR VD+ + L + GA+ +D TF +P Q L+LGADLVL
Sbjct: 135 AEKP-KLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVL 193
Query: 353 HSATKFIGGHNDVLAG-SISGSGKLVTQIRNLHH---VLGGALNPNAAYLIIRGMKTLHL 408
HS T ++ GH+DV+AG I+ +VT++ + V GGA + +YL++RG++TL
Sbjct: 194 HSCTXYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFD---SYLLLRGLRTLVP 250
Query: 409 RVQQQNSTALRMAEILEAHPKV 430
R++ A + + L+ P V
Sbjct: 251 RMELAQRNAQAIVKYLQTQPLV 272
>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
pdb|1PFF|B Chain B, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
Length = 331
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 120/219 (54%), Gaps = 4/219 (1%)
Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
+E K++ LE AE+ ASGM A + + AG H+++ Y T E L K G
Sbjct: 3 LEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFG 62
Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVK-LVSDLCHKKGAIVCIDG 333
+ ID A +E L N ++F E+P NP L+ +D++ V +K +V +D
Sbjct: 63 VEVDFIDMAVPGNIEKHLKPNTRIVYF-ETPANPTLKVIDIEDAVKQARKQKDILVIVDN 121
Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LHHVLGGAL 391
TFA+P+ L LG D+V+HSATK+I GH DV+AG + ++ ++++ + + G +
Sbjct: 122 TFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAII 181
Query: 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
+P+ A+LI RG TL +RV++ A ++AE L H V
Sbjct: 182 SPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAV 220
>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
pdb|1CL2|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
Length = 395
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 126/238 (52%), Gaps = 5/238 (2%)
Query: 197 KRRASFE--YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVT 254
+ RA+ E YGR G T +++ M LEG V+ G +A +LA + G H++
Sbjct: 47 RNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLM 106
Query: 255 TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD 314
T Y ++ F +L K+G+T + DP + L N + F ESP + + D
Sbjct: 107 TNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPN-TKIVFLESPGSITMEVHD 165
Query: 315 VKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG 372
V + AI+ ID T+A + KAL G D+ + +ATK++ GH+D + G+
Sbjct: 166 VPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVC 225
Query: 373 SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
+ + Q+R +++G ++ + AY+ RG++TL +R++Q + ++L++AE L HP+V
Sbjct: 226 NARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQV 283
>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2FQ6|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2GQN|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
pdb|2GQN|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
Length = 415
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 126/238 (52%), Gaps = 5/238 (2%)
Query: 197 KRRASFE--YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVT 254
+ RA+ E YGR G T +++ M LEG V+ G +A +LA + G H++
Sbjct: 67 RNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLM 126
Query: 255 TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD 314
T Y ++ F +L K+G+T + DP + L N + F ESP + + D
Sbjct: 127 TNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNT-KIVFLESPGSITMEVHD 185
Query: 315 VKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG 372
V + AI+ ID T+A + KAL G D+ + +ATK++ GH+D + G+
Sbjct: 186 VPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVC 245
Query: 373 SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
+ + Q+R +++G ++ + AY+ RG++TL +R++Q + ++L++AE L HP+V
Sbjct: 246 NARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQV 303
>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
pdb|1CL1|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
Length = 395
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 125/238 (52%), Gaps = 5/238 (2%)
Query: 197 KRRASFE--YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVT 254
+ RA+ E YGR G T +++ M LEG V+ G +A +LA + G H++
Sbjct: 47 RNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLM 106
Query: 255 TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD 314
T Y ++ F +L K+G+T + DP + L N + F ESP + + D
Sbjct: 107 TNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNT-KIVFLESPGSITMEVHD 165
Query: 315 VKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG 372
V + AI+ ID T+A + KAL G D+ + +AT ++ GH+D + G+
Sbjct: 166 VPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATXYLVGHSDAMIGTAVC 225
Query: 373 SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
+ + Q+R +++G ++ + AY+ RG++TL +R++Q + ++L++AE L HP+V
Sbjct: 226 NARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQV 283
>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
pdb|2CTZ|B Chain B, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
Length = 421
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 35/309 (11%)
Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
+L +HAG ++ + P+ T++Y FK + + Y R NPT V
Sbjct: 5 TLQLHAGYEPEPTTLSRQV--PIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDV 62
Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
+E++++ALEG ++ + ASG +A + L L AG +IV+T + Y T + L ++G
Sbjct: 63 LEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLG 122
Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
I + AL + ++ ES NP L D++ ++ +KG + +D T
Sbjct: 123 IEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNT 182
Query: 335 FATP-LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------LVTQIRNLH 384
F + L+ GA LV HS TK++GGH V+AG+I G L+T+ + +
Sbjct: 183 FGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGY 242
Query: 385 HVL-----------------------GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA 421
H L G AL P A++++ GM+TL LR ++ L +A
Sbjct: 243 HGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLA 302
Query: 422 EILEAHPKV 430
L P+V
Sbjct: 303 HWLLEQPQV 311
>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
pdb|3RI6|B Chain B, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
Length = 430
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 133/283 (46%), Gaps = 22/283 (7%)
Query: 169 VTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAEST 228
V A+ TPV + +A+ F+ + E+ R Y R NPT +E+++ L GA
Sbjct: 41 VHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALGV 100
Query: 229 VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288
+ + SGM+A + +L L AG +VTT + T + LP GI +D D +
Sbjct: 101 LALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAV 160
Query: 289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 348
E A + L F E+ +NP L+ D++ +S + H KG + +D T P +A LG
Sbjct: 161 EHACDETT-KLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGV 219
Query: 349 DLVLHSATKFIGGHNDV------------------LAGSISGSGKLVTQIRNLHHV---L 387
D+ + S+TKFI G LA + +G + + V L
Sbjct: 220 DIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNL 279
Query: 388 GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
G +L+P+ AYL G++T+ LR+++ A +A L + P+V
Sbjct: 280 GPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQV 322
>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8,Oah2
Length = 412
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 145/291 (49%), Gaps = 38/291 (13%)
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFE---YGRYGNPTTVVVEEKMSALEGAEST 228
A+ P+ +AY FK E ++R A+ E Y R +PT +EE++ ALEGA
Sbjct: 19 AVGLPIYAVAAYGFKTLEE----GQERFATGEGYVYARQKDPTAKALEERLKALEGALEA 74
Query: 229 VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288
V++ASG +A+ LLAL+ G +V + +T VL MG+T +DP + E +
Sbjct: 75 VVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPEAV 133
Query: 289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-ATPLNQKALSLG 347
AL+ ++ F E+ NP L D++ ++ L + G + +D TF A + L+ G
Sbjct: 134 REALSAKTRAV-FVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWG 192
Query: 348 ADLVLHSATKFIGGHNDVLAGSISG-----------------SGKLVTQ----------I 380
A +V+ S T + GH VL G++ G++ + +
Sbjct: 193 AHVVVESLTXWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERV 252
Query: 381 RNLHHVLGG-ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
R L L G AL+P AYL+ +G++T+ LRV + + TA +AE L+ HPKV
Sbjct: 253 RTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKV 303
>pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans
pdb|3L8A|B Chain B, Crystal Structure Of Metc From Streptococcus Mutans
Length = 421
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 284 DMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCID 332
D E LE + +NNV ++ SP NP R D+ +++LC K G I+ D
Sbjct: 182 DFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSD 233
>pdb|1D2F|A Chain A, X-Ray Structure Of Maly From Escherichia Coli: A
Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A
Modulator In Mal Gene Expression
pdb|1D2F|B Chain B, X-Ray Structure Of Maly From Escherichia Coli: A
Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A
Modulator In Mal Gene Expression
Length = 390
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 284 DMEGLEAALNNNNVSLFFTESPTNP---FLRCVDVKLVSDLCHKKGAIVCID 332
DM LEA L + SP NP C ++++++DLC + G V D
Sbjct: 150 DMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISD 201
>pdb|1POY|1 Chain 1, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
pdb|1POY|2 Chain 2, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
pdb|1POY|3 Chain 3, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
pdb|1POY|4 Chain 4, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
Length = 323
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 23/111 (20%)
Query: 250 GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNN--NNVSLFFTESPTN 307
G ++ T D R + L K+G + DP ++E L NV+ F +++P N
Sbjct: 136 GSLLLTDDA----REVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPAN 191
Query: 308 PFLRC-VDVKLVSD---------------LCHKKGAIVCIDGTFATPLNQK 342
P++ V++ ++ + + K+G I +D + A P N K
Sbjct: 192 PYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMD-SLAIPANAK 241
>pdb|1POT|A Chain A, Spermidine/putrescine-binding Protein Complexed With
Spermidine (monomer Form)
Length = 325
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 23/111 (20%)
Query: 250 GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNN--NNVSLFFTESPTN 307
G ++ T D R + L K+G + DP ++E L NV+ F +++P N
Sbjct: 138 GSLLLTDDA----REVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPAN 193
Query: 308 PFLRC-VDVKLVSD---------------LCHKKGAIVCIDGTFATPLNQK 342
P++ V++ ++ + + K+G I +D + A P N K
Sbjct: 194 PYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMD-SLAIPANAK 243
>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs
pdb|1P3W|A Chain A, X-Ray Crystal Structure Of E. Coli Iscs
Length = 404
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 22/176 (12%)
Query: 201 SFEYGRYGNPTTVVVEEKMSALEGAE-STVIMASGMSASTVMLLA-----LVPAGGHIVT 254
S +G + +++ L GA+ ++ SG + S + + G HI+T
Sbjct: 40 SHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIIT 99
Query: 255 TTDCYRKTRIFIETV--LPKMGITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTN 307
+ ++ ++T L + G T + P D++ LEAA+ ++ + L N
Sbjct: 100 SKTEHKAV---LDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTI-LVSIMHVNN 155
Query: 308 PFLRCVDVKLVSDLCHKKGAIVCIDGTFAT---PLNQKALSLGADLVLHSATKFIG 360
D+ + ++C +G I +D T + P++ L + DL+ S K G
Sbjct: 156 EIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKV--DLMSFSGHKIYG 209
>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVJ|B Chain B, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVK|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 2)
pdb|3LVL|B Chain B, Crystal Structure Of E.Coli Iscs-Iscu Complex
pdb|3LVM|A Chain A, Crystal Structure Of E.Coli Iscs
pdb|3LVM|B Chain B, Crystal Structure Of E.Coli Iscs
Length = 423
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 22/176 (12%)
Query: 201 SFEYGRYGNPTTVVVEEKMSALEGAE-STVIMASGMSASTVMLLA-----LVPAGGHIVT 254
S +G + +++ L GA+ ++ SG + S + + G HI+T
Sbjct: 59 SHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIIT 118
Query: 255 TTDCYRKTRIFIETV--LPKMGITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTN 307
+ ++ ++T L + G T + P D++ LEAA+ ++ + L N
Sbjct: 119 SKTEHKAV---LDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTI-LVSIMHVNN 174
Query: 308 PFLRCVDVKLVSDLCHKKGAIVCIDGTFAT---PLNQKALSLGADLVLHSATKFIG 360
D+ + ++C +G I +D T + P++ L + DL+ S K G
Sbjct: 175 EIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKV--DLMSFSGHKIYG 228
>pdb|1JZD|A Chain A, Dsbc-Dsbdalpha Complex
pdb|1JZD|B Chain B, Dsbc-Dsbdalpha Complex
Length = 220
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 266 IETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTES 304
I+ L KMGI ++ I PA + G++ L N+ V L+ T+
Sbjct: 9 IQQTLAKMGIKSSDIQPAPVAGMKTVLTNSGV-LYITDD 46
>pdb|1EEJ|A Chain A, Crystal Structure Of The Protein Disulfide Bond Isomerase,
Dsbc, From Escherichia Coli
pdb|1EEJ|B Chain B, Crystal Structure Of The Protein Disulfide Bond Isomerase,
Dsbc, From Escherichia Coli
pdb|1TJD|A Chain A, The Crystal Structure Of The Reduced Disulphide Bond
Isomerase, Dsbc, From Escherichia Coli
Length = 216
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 266 IETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTES 304
I+ L KMGI ++ I PA + G++ L N+ V L+ T+
Sbjct: 5 IQQTLAKMGIKSSDIQPAPVAGMKTVLTNSGV-LYITDD 42
>pdb|1G0T|A Chain A, Dsbc Mutant C101s
pdb|1G0T|B Chain B, Dsbc Mutant C101s
pdb|1JZO|A Chain A, Dsbc C101s
pdb|1JZO|B Chain B, Dsbc C101s
Length = 216
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 266 IETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTES 304
I+ L KMGI ++ I PA + G++ L N+ V L+ T+
Sbjct: 5 IQQTLAKMGIKSSDIQPAPVAGMKTVLTNSGV-LYITDD 42
>pdb|2IYJ|A Chain A, Crystal Structure Of The N-Terminal Dimer Domain Of E.Coli
Dsbc
pdb|2IYJ|B Chain B, Crystal Structure Of The N-Terminal Dimer Domain Of E.Coli
Dsbc
Length = 75
Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 266 IETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTE 303
I+ L KMGI ++ I PA + G++ L N+ V L+ T+
Sbjct: 9 IQQTLAKMGIKSSDIQPAPVAGMKTVLTNSGV-LYITD 45
>pdb|2AEU|A Chain A, Mj0158, Apo Form
Length = 374
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 316 KLVSDLCHKKGAIVCIDGTFATPL----NQK-ALSLGADLVLHSATKFIGGHNDVLAGSI 370
K V + K AIV +D + NQ AL LGADLV+ S K + G G +
Sbjct: 162 KKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPR---GGLL 218
Query: 371 SGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL-RVQQ 412
+G +LV +I G P I R +K +L R+++
Sbjct: 219 AGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRK 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,424,443
Number of Sequences: 62578
Number of extensions: 374795
Number of successful extensions: 1050
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 956
Number of HSP's gapped (non-prelim): 48
length of query: 451
length of database: 14,973,337
effective HSP length: 102
effective length of query: 349
effective length of database: 8,590,381
effective search space: 2998042969
effective search space used: 2998042969
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)