Query 013020
Match_columns 451
No_of_seqs 148 out of 1334
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 08:43:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 1.4E-71 3.1E-76 584.8 26.6 424 2-437 119-570 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 4.6E-50 9.9E-55 403.9 13.6 361 31-436 115-496 (498)
3 PF00854 PTR2: POT family; In 100.0 2.7E-46 5.9E-51 379.3 9.4 315 28-371 28-371 (372)
4 TIGR00926 2A1704 Peptide:H+ sy 100.0 8E-42 1.7E-46 365.6 31.2 337 32-430 84-654 (654)
5 PRK15462 dipeptide/tripeptide 100.0 2.8E-39 6.1E-44 335.6 25.1 361 34-436 101-488 (493)
6 PRK10207 dipeptide/tripeptide 100.0 3.3E-35 7.2E-40 307.9 24.8 360 34-436 106-485 (489)
7 TIGR00924 yjdL_sub1_fam amino 100.0 9.5E-34 2.1E-38 296.3 25.7 351 33-433 102-474 (475)
8 PRK09584 tppB putative tripept 100.0 4.6E-33 9.9E-38 292.9 27.1 361 33-438 112-490 (500)
9 PRK10489 enterobactin exporter 99.1 3.2E-08 6.8E-13 101.7 25.7 296 33-437 110-409 (417)
10 PRK11646 multidrug resistance 98.9 1.5E-07 3.3E-12 96.4 21.0 288 32-424 98-385 (400)
11 cd06174 MFS The Major Facilita 98.9 4.1E-07 8.9E-12 89.7 22.5 264 31-424 85-349 (352)
12 PRK15402 multidrug efflux syst 98.8 2.3E-06 5.1E-11 87.5 27.0 267 32-385 100-369 (406)
13 TIGR00892 2A0113 monocarboxyla 98.8 1.7E-07 3.7E-12 97.8 18.8 62 323-384 332-393 (455)
14 TIGR00893 2A0114 d-galactonate 98.8 1.3E-06 2.9E-11 87.4 24.5 86 32-124 81-166 (399)
15 TIGR00900 2A0121 H+ Antiporter 98.8 5.4E-07 1.2E-11 89.6 21.2 266 32-384 91-361 (365)
16 PRK11551 putative 3-hydroxyphe 98.8 2E-06 4.3E-11 87.8 24.8 84 32-122 102-185 (406)
17 PRK03545 putative arabinose tr 98.8 2.4E-06 5.3E-11 86.9 25.1 282 32-428 96-381 (390)
18 PRK12382 putative transporter; 98.8 2.2E-06 4.7E-11 87.2 24.0 273 32-425 111-387 (392)
19 PRK05122 major facilitator sup 98.7 4.6E-06 9.9E-11 85.0 25.5 277 33-426 112-388 (399)
20 PRK10054 putative transporter; 98.7 1.2E-06 2.6E-11 89.6 21.3 81 34-122 97-177 (395)
21 PRK11010 ampG muropeptide tran 98.7 3.3E-06 7.2E-11 89.0 24.5 86 31-123 105-191 (491)
22 TIGR00902 2A0127 phenyl propri 98.7 1.1E-06 2.3E-11 89.5 19.4 273 32-421 93-373 (382)
23 PRK09874 drug efflux system pr 98.7 3E-06 6.6E-11 86.3 22.9 84 32-123 106-189 (408)
24 PRK10504 putative transporter; 98.7 9.5E-06 2.1E-10 84.7 26.3 87 32-125 97-183 (471)
25 TIGR00879 SP MFS transporter, 98.6 4E-06 8.6E-11 86.4 21.8 85 33-124 127-214 (481)
26 PF07690 MFS_1: Major Facilita 98.6 4.5E-07 9.7E-12 89.9 13.8 85 32-123 84-168 (352)
27 PF05977 MFS_3: Transmembrane 98.6 1.3E-05 2.8E-10 85.1 25.4 267 31-384 101-367 (524)
28 PRK06814 acylglycerophosphoeth 98.6 3.1E-06 6.7E-11 98.2 22.5 282 31-384 106-394 (1140)
29 TIGR00894 2A0114euk Na(+)-depe 98.6 1.4E-05 3.1E-10 83.3 25.1 84 33-123 131-215 (465)
30 KOG1330 Sugar transporter/spin 98.6 1.3E-06 2.8E-11 88.7 15.8 88 31-125 119-208 (493)
31 TIGR00898 2A0119 cation transp 98.6 2.3E-05 5.1E-10 82.5 24.8 83 32-124 179-261 (505)
32 TIGR00711 efflux_EmrB drug res 98.5 2.1E-05 4.5E-10 82.1 23.7 86 32-124 89-174 (485)
33 PRK14995 methyl viologen resis 98.5 1.4E-05 3.1E-10 84.3 21.8 87 31-123 92-178 (495)
34 TIGR00710 efflux_Bcr_CflA drug 98.5 3.6E-05 7.9E-10 77.4 23.8 87 32-125 92-178 (385)
35 TIGR00792 gph sugar (Glycoside 98.5 4E-05 8.7E-10 78.9 24.4 111 243-385 262-379 (437)
36 PRK11128 putative 3-phenylprop 98.5 1.2E-05 2.7E-10 81.6 19.3 81 32-121 93-173 (382)
37 PRK03893 putative sialic acid 98.5 1.7E-05 3.7E-10 83.3 20.6 80 32-118 107-186 (496)
38 PRK10077 xylE D-xylose transpo 98.5 4.1E-05 8.8E-10 79.9 23.3 86 31-123 118-211 (479)
39 PRK11102 bicyclomycin/multidru 98.4 0.0001 2.2E-09 74.2 25.2 86 32-124 78-163 (377)
40 TIGR00899 2A0120 sugar efflux 98.4 6.3E-05 1.4E-09 75.5 23.5 87 33-124 87-173 (375)
41 PRK11663 regulatory protein Uh 98.4 7.6E-05 1.7E-09 77.3 24.6 80 33-119 111-190 (434)
42 TIGR00788 fbt folate/biopterin 98.4 5E-06 1.1E-10 87.2 15.7 83 36-123 123-205 (468)
43 PRK11902 ampG muropeptide tran 98.4 7.5E-05 1.6E-09 76.4 23.9 85 32-123 93-178 (402)
44 TIGR00901 2A0125 AmpG-related 98.4 1.2E-05 2.7E-10 80.5 17.6 86 32-124 82-175 (356)
45 PRK12307 putative sialic acid 98.4 7.8E-05 1.7E-09 76.5 22.3 79 32-117 105-183 (426)
46 PRK08633 2-acyl-glycerophospho 98.3 4.7E-05 1E-09 88.3 22.6 64 32-102 102-165 (1146)
47 PRK15403 multidrug efflux syst 98.3 0.00013 2.8E-09 75.1 23.4 84 32-122 103-186 (413)
48 TIGR00895 2A0115 benzoate tran 98.3 4E-05 8.8E-10 77.1 19.3 84 32-122 104-187 (398)
49 TIGR00890 2A0111 Oxalate/Forma 98.3 6.3E-05 1.4E-09 75.0 19.9 84 32-123 90-173 (377)
50 TIGR00903 2A0129 major facilit 98.3 7E-05 1.5E-09 76.1 20.4 80 32-119 78-157 (368)
51 PRK03633 putative MFS family t 98.3 0.00021 4.5E-09 72.5 22.9 72 32-110 93-164 (381)
52 PRK10473 multidrug efflux syst 98.3 0.00034 7.3E-09 71.1 24.4 84 32-122 90-173 (392)
53 TIGR01301 GPH_sucrose GPH fami 98.3 0.00014 2.9E-09 76.2 21.2 327 34-430 115-474 (477)
54 PRK10213 nepI ribonucleoside t 98.2 0.00054 1.2E-08 70.0 25.4 84 31-121 106-189 (394)
55 PRK09528 lacY galactoside perm 98.2 0.00011 2.4E-09 75.6 19.5 136 242-426 266-402 (420)
56 PF13347 MFS_2: MFS/sugar tran 98.2 0.0002 4.2E-09 74.0 21.4 308 32-431 102-425 (428)
57 PRK09848 glucuronide transport 98.2 0.00016 3.5E-09 75.1 20.8 86 279-384 294-386 (448)
58 PRK09705 cynX putative cyanate 98.2 0.00053 1.2E-08 70.0 24.3 84 32-123 96-180 (393)
59 PRK15011 sugar efflux transpor 98.2 0.0006 1.3E-08 69.5 24.3 70 49-124 121-191 (393)
60 PRK11195 lysophospholipid tran 98.2 0.00082 1.8E-08 68.7 25.3 77 37-121 92-168 (393)
61 PRK10091 MFS transport protein 98.2 0.00033 7.2E-09 71.1 22.2 84 32-122 90-173 (382)
62 PRK11652 emrD multidrug resist 98.2 0.0011 2.5E-08 67.3 25.7 83 32-121 95-177 (394)
63 TIGR00889 2A0110 nucleoside tr 98.2 0.00026 5.6E-09 73.1 20.8 94 325-428 309-403 (418)
64 PRK03699 putative transporter; 98.2 0.0012 2.6E-08 67.4 25.4 86 32-124 94-180 (394)
65 TIGR00926 2A1704 Peptide:H+ sy 98.1 3.1E-05 6.7E-10 84.1 13.3 229 31-306 80-342 (654)
66 PLN00028 nitrate transmembrane 98.1 0.00016 3.5E-09 75.9 18.3 83 32-122 123-214 (476)
67 PRK11043 putative transporter; 98.1 0.00075 1.6E-08 68.8 22.6 85 32-123 93-177 (401)
68 PRK11273 glpT sn-glycerol-3-ph 98.1 0.0016 3.4E-08 67.9 25.2 83 32-121 119-202 (452)
69 KOG2532 Permease of the major 98.1 9.4E-05 2E-09 77.3 15.9 308 35-427 130-447 (466)
70 PRK09669 putative symporter Ya 98.1 0.00095 2.1E-08 69.3 23.4 62 324-385 319-387 (444)
71 TIGR01299 synapt_SV2 synaptic 98.0 0.0012 2.6E-08 72.9 24.1 85 32-123 254-351 (742)
72 TIGR00881 2A0104 phosphoglycer 98.0 0.00011 2.3E-09 73.4 14.5 86 32-124 82-168 (379)
73 COG2814 AraJ Arabinose efflux 98.0 0.0014 3E-08 66.5 22.1 91 31-128 99-189 (394)
74 TIGR00883 2A0106 metabolite-pr 98.0 0.001 2.2E-08 66.6 21.3 81 35-122 98-186 (394)
75 PRK10429 melibiose:sodium symp 98.0 0.0016 3.4E-08 68.3 23.2 62 323-384 323-391 (473)
76 PRK09952 shikimate transporter 97.9 0.0021 4.5E-08 66.7 22.5 77 35-118 127-211 (438)
77 PRK10642 proline/glycine betai 97.9 0.0028 6E-08 66.8 23.8 76 35-117 120-203 (490)
78 TIGR00897 2A0118 polyol permea 97.9 0.011 2.4E-07 60.5 27.5 73 33-112 105-178 (402)
79 TIGR00891 2A0112 putative sial 97.9 0.00074 1.6E-08 68.2 18.4 83 32-121 99-183 (405)
80 KOG1330 Sugar transporter/spin 97.9 1E-05 2.2E-10 82.3 4.1 147 236-431 63-213 (493)
81 TIGR00712 glpT glycerol-3-phos 97.9 0.0016 3.5E-08 67.5 20.6 83 33-122 118-201 (438)
82 PRK10406 alpha-ketoglutarate t 97.9 0.0044 9.5E-08 64.1 23.5 79 34-119 125-211 (432)
83 PRK09556 uhpT sugar phosphate 97.9 0.00056 1.2E-08 71.5 17.0 82 31-119 120-204 (467)
84 TIGR00882 2A0105 oligosacchari 97.9 0.0034 7.4E-08 63.9 22.3 84 323-422 306-390 (396)
85 TIGR02718 sider_RhtX_FptX side 97.8 0.0051 1.1E-07 62.5 23.2 52 74-125 131-182 (390)
86 PF03209 PUCC: PUCC protein; 97.8 0.014 3.1E-07 59.2 25.4 270 28-387 84-364 (403)
87 TIGR00893 2A0114 d-galactonate 97.8 0.00047 1E-08 68.8 14.9 137 241-426 32-168 (399)
88 PF07690 MFS_1: Major Facilita 97.8 0.00032 6.9E-09 69.3 12.8 132 242-422 36-167 (352)
89 TIGR00896 CynX cyanate transpo 97.7 0.0018 3.9E-08 64.8 17.0 82 32-121 86-169 (355)
90 TIGR00900 2A0121 H+ Antiporter 97.7 0.00079 1.7E-08 66.8 13.9 116 241-384 37-152 (365)
91 COG2271 UhpC Sugar phosphate p 97.7 0.00082 1.8E-08 68.0 13.4 88 33-127 117-207 (448)
92 TIGR00881 2A0104 phosphoglycer 97.6 0.00032 7E-09 69.9 10.7 137 242-427 34-171 (379)
93 PRK15075 citrate-proton sympor 97.6 0.008 1.7E-07 62.2 20.3 73 35-114 119-199 (434)
94 PRK03545 putative arabinose tr 97.6 0.0021 4.6E-08 65.3 15.6 104 281-422 76-179 (390)
95 TIGR02332 HpaX 4-hydroxyphenyl 97.6 0.0027 5.9E-08 65.3 16.5 80 282-383 76-155 (412)
96 PRK11663 regulatory protein Uh 97.6 0.0023 5E-08 66.2 15.9 109 243-384 63-171 (434)
97 TIGR02332 HpaX 4-hydroxyphenyl 97.5 0.018 3.9E-07 59.2 21.8 84 32-122 95-184 (412)
98 TIGR00880 2_A_01_02 Multidrug 97.5 0.0037 8E-08 52.4 13.9 62 323-384 50-111 (141)
99 TIGR00711 efflux_EmrB drug res 97.5 0.0017 3.7E-08 67.7 14.0 112 240-384 39-150 (485)
100 TIGR00710 efflux_Bcr_CflA drug 97.5 0.0028 6.1E-08 63.6 15.2 135 242-425 44-178 (385)
101 PRK14995 methyl viologen resis 97.4 0.0049 1.1E-07 65.0 16.9 112 240-384 43-155 (495)
102 TIGR00887 2A0109 phosphate:H+ 97.4 0.024 5.2E-07 59.9 22.2 83 33-122 115-220 (502)
103 PRK10091 MFS transport protein 97.4 0.0046 1E-07 62.7 15.6 111 241-384 41-151 (382)
104 PRK10213 nepI ribonucleoside t 97.4 0.0069 1.5E-07 61.9 16.4 108 244-384 61-168 (394)
105 PRK11551 putative 3-hydroxyphe 97.3 0.0054 1.2E-07 62.5 15.3 61 323-383 102-162 (406)
106 PRK10473 multidrug efflux syst 97.3 0.0062 1.3E-07 61.8 15.6 85 323-423 90-174 (392)
107 TIGR01272 gluP glucose/galacto 97.3 0.036 7.9E-07 54.8 20.6 87 30-123 7-109 (310)
108 TIGR00890 2A0111 Oxalate/Forma 97.2 0.007 1.5E-07 60.1 14.6 135 242-426 42-176 (377)
109 PRK11102 bicyclomycin/multidru 97.2 0.011 2.4E-07 59.4 16.1 132 244-424 32-163 (377)
110 PRK11462 putative transporter; 97.2 0.045 9.7E-07 57.3 20.7 80 37-122 113-199 (460)
111 TIGR00894 2A0114euk Na(+)-depe 97.2 0.0025 5.3E-08 66.5 11.2 62 323-384 130-191 (465)
112 KOG3762 Predicted transporter 97.2 0.0028 6.1E-08 65.9 10.7 120 279-436 436-556 (618)
113 TIGR00895 2A0115 benzoate tran 97.2 0.0043 9.2E-08 62.3 12.1 62 323-384 104-165 (398)
114 TIGR00891 2A0112 putative sial 97.2 0.0081 1.7E-07 60.6 14.1 111 241-384 50-160 (405)
115 PRK12307 putative sialic acid 97.2 0.0096 2.1E-07 61.0 14.8 110 242-384 57-166 (426)
116 KOG3764 Vesicular amine transp 97.1 0.0019 4.2E-08 64.9 8.9 117 281-435 138-255 (464)
117 PRK15403 multidrug efflux syst 97.1 0.015 3.4E-07 59.7 16.1 86 322-423 102-187 (413)
118 COG2814 AraJ Arabinose efflux 97.1 0.017 3.7E-07 58.7 15.3 138 241-428 51-189 (394)
119 TIGR00805 oat sodium-independe 97.1 0.0036 7.7E-08 68.3 11.2 132 242-384 72-232 (633)
120 PF03092 BT1: BT1 family; Int 97.1 0.045 9.7E-07 56.9 18.8 85 34-123 87-171 (433)
121 TIGR00903 2A0129 major facilit 97.1 0.027 5.8E-07 57.2 16.7 89 322-427 77-165 (368)
122 PRK09705 cynX putative cyanate 97.1 0.016 3.4E-07 59.2 15.1 108 242-383 48-155 (393)
123 PRK11646 multidrug resistance 97.1 0.02 4.4E-07 58.6 15.9 81 282-384 79-159 (400)
124 PRK10054 putative transporter; 97.0 0.024 5.1E-07 58.0 16.1 110 242-384 47-156 (395)
125 PRK10133 L-fucose transporter; 97.0 0.2 4.4E-06 52.0 23.2 61 31-98 115-175 (438)
126 TIGR00879 SP MFS transporter, 97.0 0.015 3.2E-07 59.7 14.6 110 241-380 74-183 (481)
127 KOG2504 Monocarboxylate transp 97.0 0.021 4.6E-07 60.5 15.6 98 325-437 389-486 (509)
128 TIGR00886 2A0108 nitrite extru 97.0 0.037 7.9E-07 55.2 16.8 107 242-381 41-147 (366)
129 TIGR00712 glpT glycerol-3-phos 97.0 0.013 2.9E-07 60.6 13.8 114 282-428 94-207 (438)
130 PRK03699 putative transporter; 96.9 0.03 6.6E-07 57.0 16.1 61 323-383 94-154 (394)
131 PRK11273 glpT sn-glycerol-3-ph 96.9 0.017 3.6E-07 60.2 14.4 79 282-378 96-174 (452)
132 PRK05122 major facilitator sup 96.9 0.0014 3.1E-08 66.6 5.9 95 34-135 303-397 (399)
133 cd06174 MFS The Major Facilita 96.9 0.016 3.4E-07 56.8 13.3 110 242-384 38-147 (352)
134 PRK10504 putative transporter; 96.9 0.031 6.8E-07 58.2 16.1 62 323-384 97-158 (471)
135 TIGR00898 2A0119 cation transp 96.9 0.015 3.3E-07 61.1 13.7 131 241-423 130-260 (505)
136 PRK09874 drug efflux system pr 96.9 0.035 7.6E-07 56.3 15.7 135 242-426 58-192 (408)
137 PF03825 Nuc_H_symport: Nucleo 96.9 0.021 4.6E-07 58.7 14.0 93 327-429 304-397 (400)
138 TIGR00924 yjdL_sub1_fam amino 96.8 0.016 3.5E-07 60.9 12.8 112 282-431 82-196 (475)
139 TIGR01299 synapt_SV2 synaptic 96.8 0.052 1.1E-06 60.2 16.8 61 323-383 254-314 (742)
140 TIGR00901 2A0125 AmpG-related 96.7 0.08 1.7E-06 52.8 16.8 63 322-384 81-143 (356)
141 TIGR00880 2_A_01_02 Multidrug 96.7 0.0033 7.3E-08 52.7 5.8 86 32-124 50-135 (141)
142 TIGR00887 2A0109 phosphate:H+ 96.7 0.03 6.6E-07 59.1 14.1 61 323-383 114-174 (502)
143 PF11700 ATG22: Vacuole efflux 96.7 0.65 1.4E-05 48.9 23.7 56 332-387 388-443 (477)
144 TIGR00805 oat sodium-independe 96.7 0.0044 9.6E-08 67.5 7.7 86 32-124 171-278 (633)
145 PRK15402 multidrug efflux syst 96.7 0.071 1.5E-06 54.3 16.3 62 323-384 100-161 (406)
146 TIGR00885 fucP L-fucose:H+ sym 96.6 0.079 1.7E-06 54.5 16.4 113 241-383 41-153 (410)
147 PRK11195 lysophospholipid tran 96.6 0.095 2.1E-06 53.5 16.8 108 241-384 41-148 (393)
148 TIGR00892 2A0113 monocarboxyla 96.6 0.04 8.7E-07 57.5 14.3 79 331-426 115-193 (455)
149 PRK03893 putative sialic acid 96.6 0.065 1.4E-06 56.1 15.9 62 323-384 107-168 (496)
150 TIGR01301 GPH_sucrose GPH fami 96.6 0.044 9.5E-07 57.6 13.9 130 242-383 43-175 (477)
151 PRK03633 putative MFS family t 96.6 0.094 2E-06 53.0 16.2 110 242-384 45-154 (381)
152 TIGR00899 2A0120 sugar efflux 96.5 0.06 1.3E-06 53.8 14.5 90 323-428 86-177 (375)
153 PRK11010 ampG muropeptide tran 96.5 0.11 2.4E-06 54.8 17.0 107 282-422 84-190 (491)
154 PRK11652 emrD multidrug resist 96.5 0.1 2.3E-06 52.8 16.1 62 323-384 95-156 (394)
155 PRK09556 uhpT sugar phosphate 96.5 0.011 2.3E-07 61.9 9.0 86 280-382 95-180 (467)
156 PRK10489 enterobactin exporter 96.4 0.08 1.7E-06 54.2 14.9 116 241-384 55-170 (417)
157 PRK10207 dipeptide/tripeptide 96.4 0.048 1E-06 57.6 13.3 83 281-384 83-167 (489)
158 TIGR00885 fucP L-fucose:H+ sym 96.4 0.077 1.7E-06 54.6 14.5 86 31-123 92-203 (410)
159 KOG2533 Permease of the major 96.4 0.34 7.4E-06 51.1 19.4 84 32-122 133-222 (495)
160 PRK10077 xylE D-xylose transpo 96.4 0.1 2.2E-06 54.4 15.4 120 243-383 60-179 (479)
161 PRK11043 putative transporter; 96.3 0.12 2.7E-06 52.4 15.7 62 323-384 93-154 (401)
162 KOG3626 Organic anion transpor 96.3 0.17 3.7E-06 55.3 17.1 89 32-127 236-343 (735)
163 TIGR00806 rfc RFC reduced fola 96.3 0.16 3.5E-06 53.0 16.2 60 323-383 114-173 (511)
164 PRK08633 2-acyl-glycerophospho 96.3 0.07 1.5E-06 62.1 15.1 62 323-384 102-163 (1146)
165 KOG0569 Permease of the major 96.3 1.1 2.4E-05 47.1 22.2 79 342-437 386-464 (485)
166 COG2807 CynX Cyanate permease 96.2 0.56 1.2E-05 47.1 18.7 87 32-126 98-185 (395)
167 PRK06814 acylglycerophosphoeth 96.2 0.085 1.8E-06 61.5 15.2 63 322-384 106-168 (1140)
168 KOG2533 Permease of the major 96.2 0.042 9.1E-07 57.9 11.4 95 323-427 133-227 (495)
169 PRK11902 ampG muropeptide tran 96.2 0.22 4.8E-06 50.7 16.7 84 282-384 71-154 (402)
170 PRK12382 putative transporter; 96.2 0.0087 1.9E-07 60.7 6.2 85 34-125 303-387 (392)
171 PRK09584 tppB putative tripept 96.2 0.12 2.7E-06 54.6 15.1 116 281-433 90-207 (500)
172 TIGR00886 2A0108 nitrite extru 96.0 0.26 5.6E-06 49.1 15.9 77 32-116 90-177 (366)
173 PTZ00207 hypothetical protein; 96.0 0.22 4.8E-06 53.7 16.0 116 281-430 93-208 (591)
174 TIGR00897 2A0118 polyol permea 96.0 0.28 6.2E-06 50.0 16.2 112 242-382 52-164 (402)
175 KOG3764 Vesicular amine transp 95.9 0.012 2.5E-07 59.5 5.4 107 31-143 157-266 (464)
176 COG2211 MelB Na+/melibiose sym 95.9 2.1 4.6E-05 44.7 21.9 83 282-384 305-394 (467)
177 KOG2325 Predicted transporter/ 95.9 0.1 2.2E-06 54.5 12.3 157 242-434 75-236 (488)
178 TIGR00883 2A0106 metabolite-pr 95.8 0.12 2.6E-06 51.6 12.2 89 282-384 68-156 (394)
179 PRK10642 proline/glycine betai 95.7 0.13 2.8E-06 54.2 12.7 89 281-383 89-177 (490)
180 PF03209 PUCC: PUCC protein; 95.7 1.3 2.7E-05 45.3 19.0 93 281-382 52-147 (403)
181 TIGR00806 rfc RFC reduced fola 95.6 2 4.3E-05 45.1 20.3 82 32-122 114-198 (511)
182 TIGR00792 gph sugar (Glycoside 95.6 0.16 3.6E-06 52.0 12.5 85 282-382 73-158 (437)
183 COG2271 UhpC Sugar phosphate p 95.5 0.04 8.7E-07 56.1 7.3 115 276-428 91-207 (448)
184 KOG0255 Synaptic vesicle trans 95.3 4.6 9.9E-05 42.7 23.0 81 32-122 170-250 (521)
185 TIGR00896 CynX cyanate transpo 95.3 0.56 1.2E-05 46.7 15.2 108 241-383 38-145 (355)
186 TIGR00889 2A0110 nucleoside tr 95.3 0.027 5.9E-07 58.1 5.8 85 33-124 308-399 (418)
187 PRK15034 nitrate/nitrite trans 95.3 1 2.3E-05 47.1 17.2 118 237-380 66-187 (462)
188 PLN00028 nitrate transmembrane 95.2 0.52 1.1E-05 49.4 15.2 57 324-381 124-180 (476)
189 PRK10133 L-fucose transporter; 95.1 1.3 2.9E-05 45.9 17.7 110 243-382 66-175 (438)
190 KOG2532 Permease of the major 95.0 0.32 6.9E-06 51.0 12.4 115 279-428 103-217 (466)
191 KOG1237 H+/oligopeptide sympor 94.8 0.096 2.1E-06 56.2 8.4 214 34-299 60-276 (571)
192 COG0738 FucP Fucose permease [ 94.7 2.4 5.3E-05 43.2 17.4 67 28-101 99-165 (422)
193 PRK15011 sugar efflux transpor 94.6 1.2 2.6E-05 45.3 15.5 89 324-428 105-195 (393)
194 PF05977 MFS_3: Transmembrane 94.5 1.1 2.3E-05 47.8 15.2 115 240-382 47-161 (524)
195 PRK09952 shikimate transporter 94.4 0.54 1.2E-05 48.7 12.5 110 253-383 75-184 (438)
196 PRK15462 dipeptide/tripeptide 94.3 1 2.2E-05 47.6 14.4 85 331-431 107-193 (493)
197 PRK15034 nitrate/nitrite trans 94.2 7.5 0.00016 40.7 20.5 59 31-97 126-184 (462)
198 PF00854 PTR2: POT family; In 94.2 0.33 7.2E-06 49.1 10.3 127 282-437 4-133 (372)
199 PF03137 OATP: Organic Anion T 94.2 0.0093 2E-07 63.7 -1.1 151 277-433 66-256 (539)
200 TIGR01272 gluP glucose/galacto 93.9 0.35 7.6E-06 47.7 9.5 63 322-384 8-70 (310)
201 KOG3626 Organic anion transpor 93.7 0.33 7.2E-06 53.0 9.5 152 277-434 160-350 (735)
202 PF06609 TRI12: Fungal trichot 93.5 6.2 0.00014 42.7 18.7 86 31-124 129-214 (599)
203 KOG0254 Predicted transporter 93.4 4 8.6E-05 43.3 17.1 83 32-121 141-224 (513)
204 PRK10406 alpha-ketoglutarate t 93.3 1.6 3.5E-05 44.9 13.8 108 255-383 76-183 (432)
205 KOG0569 Permease of the major 93.2 2.2 4.8E-05 44.8 14.4 58 323-380 115-172 (485)
206 KOG0254 Predicted transporter 93.0 1.9 4E-05 45.8 13.8 104 241-377 92-195 (513)
207 KOG2816 Predicted transporter 93.0 4.8 0.0001 42.2 16.5 84 281-387 310-393 (463)
208 TIGR02718 sider_RhtX_FptX side 92.8 4.2 9.1E-05 41.0 15.7 85 324-424 97-181 (390)
209 TIGR00882 2A0105 oligosacchari 91.5 3.2 6.9E-05 42.0 13.0 55 327-383 102-156 (396)
210 PF05978 UNC-93: Ion channel r 91.0 5.2 0.00011 35.4 12.1 61 323-383 88-148 (156)
211 KOG2615 Permease of the major 90.9 0.9 1.9E-05 46.0 7.8 81 282-385 101-181 (451)
212 KOG2615 Permease of the major 90.1 3.2 7E-05 42.1 10.9 58 327-384 355-412 (451)
213 PF01306 LacY_symp: LacY proto 89.9 8.8 0.00019 39.6 14.3 92 321-428 309-401 (412)
214 KOG3098 Uncharacterized conser 89.9 28 0.0006 36.5 23.0 165 242-437 279-445 (461)
215 PF03092 BT1: BT1 family; Int 89.7 3.4 7.4E-05 42.9 11.4 83 282-383 62-147 (433)
216 PRK09528 lacY galactoside perm 89.6 0.24 5.1E-06 50.8 2.7 84 34-124 316-400 (420)
217 PF06609 TRI12: Fungal trichot 89.5 6.8 0.00015 42.4 13.7 122 227-384 69-190 (599)
218 PF13347 MFS_2: MFS/sugar tran 89.2 2.8 6.1E-05 43.1 10.4 126 237-382 33-162 (428)
219 PRK11128 putative 3-phenylprop 89.1 5.1 0.00011 40.3 12.1 60 323-384 93-152 (382)
220 PRK15075 citrate-proton sympor 88.6 7.4 0.00016 40.0 13.0 57 327-383 120-176 (434)
221 TIGR00902 2A0127 phenyl propri 88.5 6.7 0.00015 39.5 12.5 60 323-384 93-152 (382)
222 PRK09669 putative symporter Ya 88.5 4.3 9.4E-05 41.9 11.2 59 322-380 107-166 (444)
223 COG2223 NarK Nitrate/nitrite t 88.4 17 0.00036 37.4 14.7 81 41-130 113-196 (417)
224 PF06813 Nodulin-like: Nodulin 88.1 5.7 0.00012 38.1 10.8 118 281-431 68-185 (250)
225 TIGR00939 2a57 Equilibrative N 88.1 7.6 0.00016 40.4 12.6 124 276-426 72-195 (437)
226 PRK10429 melibiose:sodium symp 87.7 11 0.00024 39.3 13.8 57 323-379 105-162 (473)
227 COG2807 CynX Cyanate permease 87.4 16 0.00034 37.0 13.6 116 276-430 74-189 (395)
228 PRK11462 putative transporter; 86.4 26 0.00057 36.5 15.7 57 324-380 109-166 (460)
229 PF11700 ATG22: Vacuole efflux 85.4 1.7 3.6E-05 45.8 6.1 87 32-125 379-466 (477)
230 PF02487 CLN3: CLN3 protein; 85.3 12 0.00027 38.3 12.0 81 276-383 86-166 (402)
231 COG0738 FucP Fucose permease [ 84.6 52 0.0011 33.8 15.8 90 276-384 75-164 (422)
232 COG2270 Permeases of the major 83.8 57 0.0012 33.7 20.6 87 279-387 318-404 (438)
233 PRK09848 glucuronide transport 80.4 2.1 4.7E-05 44.2 4.6 91 33-124 319-425 (448)
234 PF06679 DUF1180: Protein of u 79.9 3.4 7.3E-05 36.7 4.9 30 405-434 94-123 (163)
235 KOG2563 Permease of the major 79.7 7.8 0.00017 40.2 8.0 101 326-438 361-461 (480)
236 KOG2504 Monocarboxylate transp 79.5 1.8 3.8E-05 46.1 3.6 89 32-127 387-476 (509)
237 PF01891 CbiM: Cobalt uptake s 79.5 26 0.00057 32.3 11.0 98 246-355 107-204 (205)
238 TIGR00769 AAA ADP/ATP carrier 79.4 88 0.0019 33.0 16.7 50 336-385 137-190 (472)
239 KOG0255 Synaptic vesicle trans 78.7 13 0.00029 39.2 10.0 84 322-424 169-252 (521)
240 KOG3574 Acetyl-CoA transporter 78.0 26 0.00056 35.9 10.8 166 251-445 80-249 (510)
241 PF03137 OATP: Organic Anion T 77.9 0.62 1.3E-05 49.9 -0.4 93 32-131 140-254 (539)
242 PF03825 Nuc_H_symport: Nucleo 77.4 3.1 6.8E-05 42.7 4.6 85 37-127 305-395 (400)
243 KOG4686 Predicted sugar transp 76.9 78 0.0017 31.3 13.3 82 331-424 359-440 (459)
244 COG2211 MelB Na+/melibiose sym 76.1 76 0.0017 33.3 14.3 103 321-435 109-212 (467)
245 COG2223 NarK Nitrate/nitrite t 74.5 31 0.00067 35.5 10.6 152 235-431 43-197 (417)
246 PF01102 Glycophorin_A: Glycop 72.5 4.1 9E-05 34.4 3.2 32 408-439 70-101 (122)
247 KOG4255 Uncharacterized conser 72.0 1.1E+02 0.0025 30.6 17.0 104 321-434 110-218 (439)
248 PRK07331 cobalt transport prot 71.7 42 0.00091 33.4 10.7 105 246-357 108-220 (322)
249 PF00083 Sugar_tr: Sugar (and 71.0 0.14 3.1E-06 52.8 -7.3 62 322-383 100-161 (451)
250 TIGR00788 fbt folate/biopterin 65.9 1.2E+02 0.0027 31.6 13.5 57 327-384 123-182 (468)
251 KOG4686 Predicted sugar transp 65.5 12 0.00026 36.8 5.1 78 37-121 356-436 (459)
252 KOG2816 Predicted transporter 63.5 92 0.002 32.7 11.8 102 246-384 70-172 (463)
253 KOG3574 Acetyl-CoA transporter 62.4 22 0.00047 36.4 6.5 110 324-435 369-496 (510)
254 PRK10921 twin-arginine protein 61.8 1.5E+02 0.0034 28.4 12.6 37 322-358 151-190 (258)
255 PF01770 Folate_carrier: Reduc 58.9 2.2E+02 0.0049 29.4 14.6 62 322-384 92-153 (412)
256 KOG1479 Nucleoside transporter 57.1 2E+02 0.0044 29.6 12.5 82 327-424 120-201 (406)
257 PTZ00207 hypothetical protein; 55.1 18 0.0004 39.2 5.0 84 31-124 118-203 (591)
258 PF11368 DUF3169: Protein of u 54.7 16 0.00034 34.9 4.1 7 371-377 21-27 (248)
259 PF06123 CreD: Inner membrane 54.7 2.2E+02 0.0048 29.6 12.5 46 284-348 300-345 (430)
260 KOG4026 Uncharacterized conser 53.5 1.8E+02 0.004 26.7 12.1 114 320-449 72-201 (207)
261 COG5336 Uncharacterized protei 52.9 58 0.0013 26.8 6.3 32 351-382 33-64 (116)
262 PRK11715 inner membrane protei 52.2 2.3E+02 0.005 29.5 12.2 46 284-348 306-351 (436)
263 COG3202 ATP/ADP translocase [E 51.1 3E+02 0.0065 29.2 12.8 54 332-385 152-209 (509)
264 PRK11909 cobalt transport prot 50.1 2.3E+02 0.0049 26.8 11.2 36 323-358 182-218 (230)
265 PF14007 YtpI: YtpI-like prote 49.3 20 0.00043 28.5 3.1 53 82-135 34-86 (89)
266 PRK08319 cobalt transport prot 48.2 2.2E+02 0.0049 26.6 10.6 32 328-359 183-214 (224)
267 COG3104 PTR2 Dipeptide/tripept 47.7 74 0.0016 33.6 7.8 121 281-437 94-216 (498)
268 PF06645 SPC12: Microsomal sig 46.0 23 0.0005 27.2 2.9 55 75-132 7-61 (76)
269 KOG0252 Inorganic phosphate tr 45.0 47 0.001 34.9 5.8 149 237-421 80-236 (538)
270 KOG0252 Inorganic phosphate tr 44.9 30 0.00064 36.3 4.4 67 350-427 432-498 (538)
271 PF07857 DUF1632: CEO family ( 44.8 1.3E+02 0.0028 28.9 8.4 32 352-383 71-102 (254)
272 TIGR00123 cbiM cobalamin biosy 42.1 2.9E+02 0.0063 25.7 10.9 33 325-357 180-212 (214)
273 PF06963 FPN1: Ferroportin1 (F 40.9 4.4E+02 0.0095 27.4 14.6 65 321-385 353-417 (432)
274 PRK06265 cobalt transport prot 40.8 2.9E+02 0.0062 25.3 10.3 95 246-358 102-198 (199)
275 PF13000 Acatn: Acetyl-coenzym 39.0 1.2E+02 0.0026 32.2 7.8 69 320-388 400-470 (544)
276 PF01306 LacY_symp: LacY proto 38.7 2.5E+02 0.0055 29.0 10.1 25 242-266 47-71 (412)
277 PF12606 RELT: Tumour necrosis 38.3 54 0.0012 23.1 3.5 16 422-437 19-34 (50)
278 PF02487 CLN3: CLN3 protein; 38.0 1E+02 0.0022 31.7 7.1 62 323-384 334-395 (402)
279 PF06027 DUF914: Eukaryotic pr 37.0 3.4E+02 0.0074 27.2 10.4 42 81-123 11-58 (334)
280 PF05915 DUF872: Eukaryotic pr 36.0 1.6E+02 0.0035 24.5 6.8 64 355-432 39-102 (115)
281 PF01733 Nucleoside_tran: Nucl 35.4 12 0.00027 36.7 0.0 81 332-428 5-85 (309)
282 COG5058 LAG1 Protein transport 35.3 43 0.00094 33.0 3.6 30 401-430 334-363 (395)
283 KOG2927 Membrane component of 35.0 82 0.0018 31.5 5.5 31 350-383 207-237 (372)
284 PF15069 FAM163: FAM163 family 34.4 49 0.0011 28.6 3.4 9 415-423 19-27 (143)
285 PF11755 DUF3311: Protein of u 34.3 85 0.0019 23.3 4.4 24 406-429 29-52 (66)
286 PF13000 Acatn: Acetyl-coenzym 34.0 4.4E+02 0.0095 28.2 10.9 123 251-385 52-179 (544)
287 TIGR00769 AAA ADP/ATP carrier 31.3 62 0.0013 34.1 4.4 68 50-123 283-350 (472)
288 PF08374 Protocadherin: Protoc 30.7 18 0.0004 33.4 0.3 45 401-445 33-77 (221)
289 PF03219 TLC: TLC ATP/ADP tran 28.6 73 0.0016 33.7 4.4 83 36-124 281-367 (491)
290 PF00083 Sugar_tr: Sugar (and 28.5 4.1 8.9E-05 41.9 -5.0 83 32-121 101-186 (451)
291 COG1585 Membrane protein impli 28.2 3.9E+02 0.0085 23.0 8.6 21 321-342 3-23 (140)
292 COG0477 ProP Permeases of the 28.0 98 0.0021 28.3 4.9 77 33-115 94-173 (338)
293 COG0477 ProP Permeases of the 27.9 2.3E+02 0.0051 25.6 7.5 61 323-383 93-155 (338)
294 PF00558 Vpu: Vpu protein; In 27.1 88 0.0019 24.4 3.4 27 411-437 11-37 (81)
295 PF15471 TMEM171: Transmembran 26.9 76 0.0017 30.4 3.6 44 393-436 137-189 (319)
296 PRK13108 prolipoprotein diacyl 24.7 5E+02 0.011 27.3 9.6 21 358-378 222-242 (460)
297 PF15050 SCIMP: SCIMP protein 24.6 71 0.0015 26.7 2.6 9 406-414 6-14 (133)
298 KOG4332 Predicted sugar transp 24.5 1.4E+02 0.0031 29.3 5.0 90 26-122 337-426 (454)
299 PF06963 FPN1: Ferroportin1 (F 23.8 8.4E+02 0.018 25.4 14.2 29 237-265 37-65 (432)
300 COG0682 Lgt Prolipoprotein dia 21.6 4.2E+02 0.0091 25.9 7.8 49 328-377 189-237 (287)
301 KOG1277 Endosomal membrane pro 20.9 91 0.002 32.4 3.1 39 411-449 236-274 (593)
302 PF03806 ABG_transport: AbgT p 20.3 1.8E+02 0.0039 30.9 5.2 33 404-436 200-232 (502)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-71 Score=584.76 Aligned_cols=424 Identities=39% Similarity=0.687 Sum_probs=376.5
Q ss_pred EeeehhhhcCCCCCCCC--CcCCCCCCCCCccchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHH
Q 013020 2 VLLWSTTILPGAKPPAC--DQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 79 (451)
Q Consensus 2 ~~l~~~~~~~~~~p~~c--~~~~~~c~~~~~~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~ 79 (451)
.+||+++++|.++|++| ....+.|+.|++.+...+|.+|.++++|+|+.|||+.++++||||+.+++++ .++.++||
T Consensus 119 ~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~-~~~~~fFn 197 (571)
T KOG1237|consen 119 FGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEV-KGIPSFFN 197 (571)
T ss_pred HHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchh-hCcccchh
Confidence 57899999999999998 3335689999999999999999999999999999999999999998777655 56779999
Q ss_pred HHHHHHHHHHHHHhhhhheeeeccCccchhhHHHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCC
Q 013020 80 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLP 159 (451)
Q Consensus 80 ~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~ 159 (451)
|||+.+|+|++++.++..|+|++.||.+||+++++.|.+++++|+.|++.|++++|.++|++++.+|+++++++++.+.+
T Consensus 198 W~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~ 277 (571)
T KOG1237|consen 198 WFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVS 277 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred CcccchhhccCCCccccCCCCchhhhhhhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHH---------------
Q 013020 160 TQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK--------------- 224 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~--------------- 224 (451)
.+. ..+...........+++.++++|+|++....+. .++...++|.+|+++||||+|.+++
T Consensus 278 ~~~-~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~---~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~ 353 (571)
T KOG1237|consen 278 LDP-EELYYDCTDSVAIEGTKPFRFLDKAALKTSDDL---KDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVY 353 (571)
T ss_pred Ccc-hhccccccccccccCCcccchhhHhhccCCccc---ccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHH
Confidence 542 111111112222334678899999998754331 2344568899999999999999987
Q ss_pred ----------HhhccCcCCCCccccCchhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHH
Q 013020 225 ----------ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMT 294 (451)
Q Consensus 225 ----------~~~md~~~~~g~~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~l 294 (451)
+.+|||+++++++||+++++.+..+.+++++|+++++.+|+.||.++++.++++++||++|++++.+++.
T Consensus 354 aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~ 433 (571)
T KOG1237|consen 354 AQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMA 433 (571)
T ss_pred HhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHH
Confidence 5679999984599999999999999999999999999999999999988889999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHH
Q 013020 295 AWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANL 374 (451)
Q Consensus 295 v~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~ 374 (451)
+++++|.+|++.+.++ ....++||++||+|||+|+|+||+|.+++++||+|+|||++||++.+++|+++.|+||+
T Consensus 434 ~aa~vE~krl~~~~~~-----~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~ 508 (571)
T KOG1237|consen 434 VAGIVEAKRLKTAVSL-----LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNY 508 (571)
T ss_pred HHHHHHHHHhhhhhhc-----cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887761 12347899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccccccCCCCCCCC-CCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCcccCCC
Q 013020 375 VASLIMNAVDDITKRGGNGGWIP-SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV 437 (451)
Q Consensus 375 l~~~l~~~~~~~s~~~~~~~w~~-~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~~~~ 437 (451)
++.+++++++..+.+ ..+|++ +|+|++|+|+|||++++++.++.+.|..++++|+++..+.
T Consensus 509 lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~~ 570 (571)
T KOG1237|consen 509 LSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDKD 570 (571)
T ss_pred HHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccccC
Confidence 999999999988743 348999 9999999999999999999999999999999999877653
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-50 Score=403.88 Aligned_cols=361 Identities=16% Similarity=0.170 Sum_probs=267.0
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh
Q 013020 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG 110 (451)
Q Consensus 31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~ 110 (451)
.....+|++|++|++|+|++|||++++++|||+++|+ |||.+|++||+++|+|++++|++++++++++||+.+|+
T Consensus 115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp-----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~ 189 (498)
T COG3104 115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP-----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFG 189 (498)
T ss_pred ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc-----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHH
Confidence 4567899999999999999999999999999999999 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccEeecC--CCCCchhH----------HHHHHHHH---HHh-cCCC----CCC-cccchhhcc
Q 013020 111 VPAVIMLLSALSFFLASPFYVKSK--ANTSLLPG----------LTQVLVAS---FKN-RRTK----LPT-QATEEMYHH 169 (451)
Q Consensus 111 i~~i~~~i~li~f~~g~~~~~~~~--p~~~~l~~----------~~~vl~~a---~~~-~~~~----~~~-~~~~~~~~~ 169 (451)
+++++|.+++++|++++|++.+.. |..+|.+. +.+++... ..+ +... .+. .....+..+
T Consensus 190 ~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~ 269 (498)
T COG3104 190 LAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAE 269 (498)
T ss_pred HHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887653 33333211 11111111 000 0000 000 000000000
Q ss_pred CCCccccCCCCchhhhhhhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHH
Q 013020 170 GKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAIL 249 (451)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l 249 (451)
........ +++.|.+ .++.... ....+|.++ +|-.++-.++..+..|++.. |+++|++|+|++||+
T Consensus 270 ~~~~~~~~-~er~r~~-~~~~Lfl---------~~~iFW~~~--~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~ 335 (498)
T COG3104 270 AFRSPKVF-DERRRLL-AAIPLFL---------FAVIFWALY--EQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPF 335 (498)
T ss_pred HhccCccH-HHHHHHH-HHHHHHH---------HHHHHHHHH--HhccchHHHHHHHhhccccc-ceecCHHHHHhhCHH
Confidence 00000000 1111211 1111110 124566643 44444455554666788855 799999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHH
Q 013020 250 TLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLP 329 (451)
Q Consensus 250 ~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~ 329 (451)
+|++++|+++++|+|+.++. ++ |+++.|+++|+++.+++++++........ . ....+|++|+++
T Consensus 336 ~Iii~~pI~a~l~~~l~~~~-~~---ps~~~KFalGl~l~g~~fl~l~~~~~~~~---~---------~~~~~s~~~lil 399 (498)
T COG3104 336 FIILFSPILAALWTKLGRGN-KQ---PSTPIKFALGLILAGLGFLILLLAGIWFG---G---------PSGLVSVWWLVL 399 (498)
T ss_pred HHHHHHHHHHHHHhHhhcCC-CC---CCcchHHHHHHHHHHHHHHHHHHHHHhhc---C---------CCCCcCHHHHHH
Confidence 99999999999999988764 44 89999999999999999999988864321 0 124799999999
Q ss_pred HHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHH
Q 013020 330 YLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYY 409 (451)
Q Consensus 330 ~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f 409 (451)
.|+++++||+|++|+|+|+++++||++++|++||.|+++.++|+.+++.+...... +. +-.+......+|
T Consensus 400 ~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~~---------~~~~~~~~~~~F 469 (498)
T COG3104 400 SYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-TD---------PAYTAFIEGRVF 469 (498)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-cc---------hhhhhhhhhhhH
Confidence 99999999999999999999999999999999999999999999999988874221 00 001122345789
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcccCC
Q 013020 410 WLLTALSMANFLYYLACCKAYGPFKGR 436 (451)
Q Consensus 410 ~~la~l~lv~~~~~~~~~~~y~~~~~~ 436 (451)
+.++...++..++++..+++.+|..+.
T Consensus 470 ~~~g~v~i~~~~~~~~~~~~~~r~~~~ 496 (498)
T COG3104 470 GTIGVVAIVIGILLLLLSPKLNRMMKG 496 (498)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhcC
Confidence 999999999999999999998876654
No 3
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=100.00 E-value=2.7e-46 Score=379.26 Aligned_cols=315 Identities=31% Similarity=0.455 Sum_probs=211.2
Q ss_pred CCccchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccc
Q 013020 28 ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKV 107 (451)
Q Consensus 28 ~~~~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~ 107 (451)
+++.+.+.+|+||.++++|+|++|||++++++|||+++++ ++++++||||||++|+|++++++.++|+|+++||++
T Consensus 28 ~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~----~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~ 103 (372)
T PF00854_consen 28 PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD----SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFL 103 (372)
T ss_dssp ------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT----THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHH
T ss_pred hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch----hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhh
Confidence 3455689999999999999999999999999999998864 589999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCccEeec-CCCCCchhH-HHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhh
Q 013020 108 GFGVPAVIMLLSALSFFLASPFYVKS-KANTSLLPG-LTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFL 185 (451)
Q Consensus 108 ~F~i~~i~~~i~li~f~~g~~~~~~~-~p~~~~l~~-~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (451)
+|++|+++|++++++|+.++++|++. +|.++++.+ ...++.++.+++....+... ......................
T Consensus 104 ~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 182 (372)
T PF00854_consen 104 GFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVPKGS-SWLDWALFQYSERSIFGIIVFI 182 (372)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH-HHH-HHHHHHHHHHCCCCCCCCCCHH
T ss_pred hhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcccccch-HHHHHhhhhhhhhhhhhhhhhc
Confidence 99999999999999999999999988 778888877 44455555555544333111 1111100000000000011111
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCCCc-chhHHHHHHHHHHH-------------------------HhhccCcCCCC-ccc
Q 013020 186 NKACMAKHPEQDLTPDGRASNPNSL-CTVEQVEELKALIK-------------------------ASSMDRHVTPN-FEI 238 (451)
Q Consensus 186 ~~a~~~~~~~~~~~~~~~~~~~w~l-~~~~~v~~~k~~~~-------------------------~~~md~~~~~g-~~i 238 (451)
+ +....... ...|.. +++++++++|.+.+ ..+||+.+. + +++
T Consensus 183 ~-~~~~~~~~---------~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i 251 (372)
T PF00854_consen 183 R-AAVIFFPE---------IFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGI 251 (372)
T ss_dssp H-HHHHHCCC---------HHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------
T ss_pred c-chhhhhhh---------hhhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccc-ccccc
Confidence 1 11111110 111211 34566666665543 356777787 6 999
Q ss_pred cCchhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccc
Q 013020 239 PSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRA 318 (451)
Q Consensus 239 p~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~ 318 (451)
|++++|++|++++++++|+++++++|++++ +++ +++++|+++|++++++++++++.+|.+|.....++|
T Consensus 252 p~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~~---~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~------- 320 (372)
T PF00854_consen 252 PPAWLQSFNPIFIIIFIPILDRVVYPLLRR-GIQ---PSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG------- 320 (372)
T ss_dssp -SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHTTTHHHH---HH----T-------
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHhHHhhh-ccc---chhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC-------
Confidence 999999999999999999999999999983 333 899999999999999999999999997776555444
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHH
Q 013020 319 VVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSA 371 (451)
Q Consensus 319 ~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~ai 371 (451)
.++.+|++|+|++.+++|.++++++++..++.+|+++++.|||+|++..++
T Consensus 321 --~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~~ 371 (372)
T PF00854_consen 321 --KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSAF 371 (372)
T ss_dssp --T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH--
T ss_pred --CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhcc
Confidence 566799999999999999999999999888888888888888888876654
No 4
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=100.00 E-value=8e-42 Score=365.61 Aligned_cols=337 Identities=21% Similarity=0.385 Sum_probs=269.6
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeecc-------C
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL-------G 104 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~-------g 104 (451)
+...++++|+++++|+|++|||++++++|||++++. ++++++|+||||++|+|+++++++++++++++ |
T Consensus 84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~----~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~ 159 (654)
T TIGR00926 84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL----SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC 159 (654)
T ss_pred HHHHHHHHHHHHHhhccccccCchhhhHhhcCccch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc
Confidence 456688999999999999999999999999987655 57999999999999999999999999998554 7
Q ss_pred ccchhhHHHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhh
Q 013020 105 WKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRF 184 (451)
Q Consensus 105 ~~~~F~i~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (451)
|+++|++|+++|++++++|+.++|+|++.+|.++++.+..++++.+++++......+ ...+|
T Consensus 160 ~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~------------------~~~~~ 221 (654)
T TIGR00926 160 YPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH------------------WPLHW 221 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc------------------cchhH
Confidence 999999999999999999999999998888888888888888888877643211110 01234
Q ss_pred hhhhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHH-------------------------HhhccCcCCCCcccc
Q 013020 185 LNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK-------------------------ASSMDRHVTPNFEIP 239 (451)
Q Consensus 185 l~~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~-------------------------~~~md~~~~~g~~ip 239 (451)
+|++... ..+++++++|.+++ +.+||++++ ++++|
T Consensus 222 ld~a~~~-------------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g~~ip 281 (654)
T TIGR00926 222 LDYAKDK-------------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-GFEIQ 281 (654)
T ss_pred HHHhccc-------------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC-CEecC
Confidence 4443321 01234444444433 667888877 89999
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhh------------
Q 013020 240 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIA------------ 307 (451)
Q Consensus 240 ~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~------------ 307 (451)
++++|++|++++++++|+++..++|.++|++.+ +++++|+++|++++++++++++++|.+++...
T Consensus 282 ~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~~ 358 (654)
T TIGR00926 282 PDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFLQ 358 (654)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEEE
Confidence 999999999999999999999999999887544 79999999999999999999999999875100
Q ss_pred -------------------------------------------hh------------------c-------------C--
Q 013020 308 -------------------------------------------IN------------------E-------------G-- 311 (451)
Q Consensus 308 -------------------------------------------~~------------------~-------------g-- 311 (451)
.. . +
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (654)
T TIGR00926 359 VLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPKIS 438 (654)
T ss_pred EecCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeecCCce
Confidence 00 0 0
Q ss_pred --C-----------------------------------------------------------------------------
Q 013020 312 --I----------------------------------------------------------------------------- 312 (451)
Q Consensus 312 --~----------------------------------------------------------------------------- 312 (451)
+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (654)
T TIGR00926 439 YVLLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCDRI 518 (654)
T ss_pred EEEEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeeecccc
Confidence 0
Q ss_pred ------------C-----------CCc------------cccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchh
Q 013020 313 ------------S-----------DDL------------RAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM 357 (451)
Q Consensus 313 ------------~-----------~~~------------~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~ 357 (451)
. ++. .+.+++|++||+|||+++++||++.+++++||.|+|||++|
T Consensus 519 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~m 598 (654)
T TIGR00926 519 DNAKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNM 598 (654)
T ss_pred cccccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHH
Confidence 0 000 01245899999999999999999999999999999999999
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 013020 358 SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 430 (451)
Q Consensus 358 kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y 430 (451)
|+..+++|.++.++|+.++..+...-... +...-|..++.++++..++|.++++.|
T Consensus 599 ks~~~a~~~~~~~~g~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~f~~~a~~Y 654 (654)
T TIGR00926 599 KSVLQALWLLTVAIGNLIVVVIAEFENFS-----------------VQAAEFFLFASLMLVVMAIFSILAYFY 654 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCh-----------------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999998766442211 123456789999999999999999876
No 5
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=100.00 E-value=2.8e-39 Score=335.60 Aligned_cols=361 Identities=14% Similarity=0.097 Sum_probs=255.7
Q ss_pred hHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHH
Q 013020 34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 113 (451)
Q Consensus 34 ~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~ 113 (451)
..+++++.++++|+|.+|||.+++++|+|+++|+ +|+++|+++|+++|+|++++|++++++++++||+++|++++
T Consensus 101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~-----~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaa 175 (493)
T PRK15462 101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP-----RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAA 175 (493)
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc-----cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 4477888999999999999999999999987765 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccEeecCC-CCCchh--HHHH-------HH--HH-HHHhcCC--CCCCcc------cchh---hcc
Q 013020 114 VIMLLSALSFFLASPFYVKSKA-NTSLLP--GLTQ-------VL--VA-SFKNRRT--KLPTQA------TEEM---YHH 169 (451)
Q Consensus 114 i~~~i~li~f~~g~~~~~~~~p-~~~~l~--~~~~-------vl--~~-a~~~~~~--~~~~~~------~~~~---~~~ 169 (451)
++|++++++|+.++|++.+..+ ..+|.+ +... ++ .. ....... ...... .... +..
T Consensus 176 igm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (493)
T PRK15462 176 VGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIY 255 (493)
T ss_pred HHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877755311 112221 1000 00 00 0000000 000000 0000 000
Q ss_pred CCCccccCCCCchhhhhhhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHH
Q 013020 170 GKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAIL 249 (451)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l 249 (451)
.. .....++.+....-.. . .....+|.+| +|....-+++..+++|++++ |+++|++|+|++||+
T Consensus 256 ~~---~~~~~er~r~~~~~~l-~---------~~~~~Fw~~~--~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~ 319 (493)
T PRK15462 256 RK---AENQKQRKELGLIVTL-T---------FFSMLFWAFA--QQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAF 319 (493)
T ss_pred Hh---cCCHHHHhhHHHHHHH-H---------HHHHHHHHHH--HHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHH
Confidence 00 0001111111100000 0 0124678654 67777777887889999998 999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHH
Q 013020 250 TLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLP 329 (451)
Q Consensus 250 ~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~ 329 (451)
+|+++.|++.++|.++.+|. ++ |+.+.|+++|+++.++||+++.+.... ..++ ..+|++|++.
T Consensus 320 ~ii~l~P~~a~lw~~l~~~~-~~---~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~~---------~~~s~~wl~~ 382 (493)
T PRK15462 320 AVMLCGVFLAWVVKESVAGN-RT---VRIWGKFALGLGLMSAGFCILTLSARW----SAMY---------GHSSLPLMVL 382 (493)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CC---CCcHHHHHHHHHHHHHHHHHHHHHHhh----cCCC---------CCcCHHHHHH
Confidence 99999999999998775542 23 899999999999999999999887632 1111 2599999999
Q ss_pred HHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHH-HHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHH
Q 013020 330 YLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGL-SAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYY 408 (451)
Q Consensus 330 ~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~-aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~ 408 (451)
.|+++|+||++++|+|++++++.||++++|++||+|++.. ++|+.+++.+.+.....+.. +-...+-+..++..+
T Consensus 383 ~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 458 (493)
T PRK15462 383 GLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFD----ASGAINYSINAYIEV 458 (493)
T ss_pred HHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC----ccccccchhhhHHHH
Confidence 9999999999999999999999999999999999999955 89999999998887532100 000000011246778
Q ss_pred HHHHHHHHHHH--HHHHHHHhhhcCcccCC
Q 013020 409 YWLLTALSMAN--FLYYLACCKAYGPFKGR 436 (451)
Q Consensus 409 f~~la~l~lv~--~~~~~~~~~~y~~~~~~ 436 (451)
|..++.++++. .+.+.+.-+.+|.|++.
T Consensus 459 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (493)
T PRK15462 459 FDQITWGALACVGVVLMIWLYQALKFRNRA 488 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 88888877665 45556666677766654
No 6
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=100.00 E-value=3.3e-35 Score=307.94 Aligned_cols=360 Identities=11% Similarity=0.121 Sum_probs=248.2
Q ss_pred hHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHH
Q 013020 34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 113 (451)
Q Consensus 34 ~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~ 113 (451)
.++++++.++++|+|++|||..++++|+|+++++ ||++.|+++|+++|+|+++++.+++++.+++||+++|.+++
T Consensus 106 ~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~-----~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~ 180 (489)
T PRK10207 106 DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP-----RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCG 180 (489)
T ss_pred hHHHHHHHHHHhccccccCCHHHHHHHhcCCCch-----hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 3577899999999999999999999999987654 57889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccEeec--CCCCCchh--HHHHH------HHHHHH--hcCCCCCCccc-------ch-hhccCCCc
Q 013020 114 VIMLLSALSFFLASPFYVKS--KANTSLLP--GLTQV------LVASFK--NRRTKLPTQAT-------EE-MYHHGKGS 173 (451)
Q Consensus 114 i~~~i~li~f~~g~~~~~~~--~p~~~~l~--~~~~v------l~~a~~--~~~~~~~~~~~-------~~-~~~~~~~~ 173 (451)
++++++++.++.+++++++. +|+++++. ..... +...+. ........... .. +..+....
T Consensus 181 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~ 260 (489)
T PRK10207 181 AGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKL 260 (489)
T ss_pred HHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999888777653 34333321 11100 000000 00000000000 00 00000000
Q ss_pred cccCCCCchhhhhhhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHHHHHH
Q 013020 174 MRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTI 253 (451)
Q Consensus 174 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l~iii 253 (451)
...++.+.+....... ....+|..+ +|....-.++..+++|++.. |+++|++++|++|++++++
T Consensus 261 ---~~~~r~r~~~~~~l~~----------~~~~f~~~~--~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii 324 (489)
T PRK10207 261 ---DKTGRNKMFVAFVLML----------EAVVFYILY--AQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVV 324 (489)
T ss_pred ---CHHHHHHHHHHHHHHH----------HHHHHHHHH--HHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHH
Confidence 0000001111000000 001233221 22222222222235777666 8999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHH
Q 013020 254 WIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVL 333 (451)
Q Consensus 254 ~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l 333 (451)
+.|+..+++.++ ++++.+ +++++|+++|+++.+++++++++.+... ... ...+|+||+++.|++
T Consensus 325 ~~pl~~~l~~rl-~~r~~~---~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~---------~~~~s~~~~i~~~~l 388 (489)
T PRK10207 325 ASPILAGIYTHL-GSKGKD---LSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADA---------QGLTSPWFIVLVYLF 388 (489)
T ss_pred HHHHHHHHHHHH-hhCCCC---CCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCC---------CCccCHHHHHHHHHH
Confidence 999999865444 443334 8999999999999999999887665311 001 125899999999999
Q ss_pred HHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHH
Q 013020 334 SGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLT 413 (451)
Q Consensus 334 ~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la 413 (451)
+|+||++.+|+++|++++.+|++++|++||+|+++.++|+.+++.+++.+..... ..++.. .++.+..+|..++
T Consensus 389 ~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~--~~~~~~----~~~~~~~~f~~~~ 462 (489)
T PRK10207 389 QSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDN--ITDPLE----TLPVYTNVFGKIG 462 (489)
T ss_pred HHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cccchh----hhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987753110 000100 1124678999999
Q ss_pred HHHHHHHHHHHHHhhhcCcccCC
Q 013020 414 ALSMANFLYYLACCKAYGPFKGR 436 (451)
Q Consensus 414 ~l~lv~~~~~~~~~~~y~~~~~~ 436 (451)
+.+++.+++++++.|+++|..++
T Consensus 463 ~~~~~~~v~~~~~~~~~~~~~~~ 485 (489)
T PRK10207 463 LVTLGVAVVMALMVPWLNRMINT 485 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999887443
No 7
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=100.00 E-value=9.5e-34 Score=296.32 Aligned_cols=351 Identities=14% Similarity=0.124 Sum_probs=249.1
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHH
Q 013020 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP 112 (451)
Q Consensus 33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~ 112 (451)
...+++++.++++|.|+++|+..++++|+++++++ ++|+++|+++|+++|+|+++|+.+++++++++||+++|.++
T Consensus 102 ~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~----~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~ 177 (475)
T TIGR00924 102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM----PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA 177 (475)
T ss_pred HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc----ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 45678899999999999999999999999987664 36888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCccEeecCCCCCchhHH-----H--HH----HHHHHHhcCCCCCCcccc-h---------hh-ccC
Q 013020 113 AVIMLLSALSFFLASPFYVKSKANTSLLPGL-----T--QV----LVASFKNRRTKLPTQATE-E---------MY-HHG 170 (451)
Q Consensus 113 ~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~-----~--~v----l~~a~~~~~~~~~~~~~~-~---------~~-~~~ 170 (451)
++.+++++++++..++.+++.++++++.+.. . .. +....+............ . .+ ...
T Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (475)
T TIGR00924 178 AVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRL 257 (475)
T ss_pred HHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888776554433332110 0 00 000000000000000000 0 00 000
Q ss_pred CCccccCCCCchhhhhhhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHHH
Q 013020 171 KGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILT 250 (451)
Q Consensus 171 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l~ 250 (451)
.........+..+... ..... .....+|.. .+|....-.++..++||++++ ++++|+++++++|+++
T Consensus 258 ~~~~~~~~~~~~~~~~-~l~l~---------~~~~~~~~~--~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~ 324 (475)
T TIGR00924 258 AFKPRLDAVARNKMYA-YIVLF---------LEAVVFWVL--YAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFW 324 (475)
T ss_pred HHhccCCHHHHhHHHH-HHHHH---------HHHHHHHHH--HHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHH
Confidence 0000000000000000 00000 000123322 234444444454677898887 8999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHH
Q 013020 251 LTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPY 330 (451)
Q Consensus 251 iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~ 330 (451)
+++++|++++++.++-|| +++ ++...|+++|+++.++++++++++.. .... ..++|+||++++
T Consensus 325 iil~~p~~~~~~~~l~~~-~~~---~~~~~k~~~G~~l~~~~~~~~~~~~~----~~~~---------~~~~s~~~~i~~ 387 (475)
T TIGR00924 325 VVVGSPVLAMIWTRLGRK-GKD---PTTPLKFTLGMLFCGASFLTFAASIW----FADA---------GGLTSPWFMVLI 387 (475)
T ss_pred HHHHHHHHHHHHHHHHhC-CCC---CCcHHHHHHHHHHHHHHHHHHHHHHh----hcCC---------CCccCHHHHHHH
Confidence 999999999876555443 333 78999999999999999999987732 1111 236999999999
Q ss_pred HHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHH
Q 013020 331 LVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYW 410 (451)
Q Consensus 331 y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~ 410 (451)
|+++|+||++.+|++++++++++|+++||.++|+|.+..++|+.+++.+........ + ...+|.
T Consensus 388 ~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~------~----------~~~~~~ 451 (475)
T TIGR00924 388 YLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ------G----------VTGVFG 451 (475)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------c----------hhhHHH
Confidence 999999999999999999999999999999999999999999999999887754221 1 346788
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcc
Q 013020 411 LLTALSMANFLYYLACCKAYGPF 433 (451)
Q Consensus 411 ~la~l~lv~~~~~~~~~~~y~~~ 433 (451)
.+++++++.++++++..|+++|.
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~k~ 474 (475)
T TIGR00924 452 KIGLVTLLVGVVMALMVPWLNRM 474 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998874
No 8
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=100.00 E-value=4.6e-33 Score=292.88 Aligned_cols=361 Identities=11% Similarity=0.156 Sum_probs=247.1
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHH
Q 013020 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP 112 (451)
Q Consensus 33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~ 112 (451)
...+++++.++++|.|.++|+..++++++|+++++ ++++.++++|+++|+|+++++.+.+++.+++||+++|.++
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~-----~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~ 186 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP-----RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALS 186 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch-----hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 45678899999999999999999999999976544 5778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCccEeec--CCCCCchhH------HHHHHHHH-HHhcCCCCCCcccchhhcc--------CCCccc
Q 013020 113 AVIMLLSALSFFLASPFYVKS--KANTSLLPG------LTQVLVAS-FKNRRTKLPTQATEEMYHH--------GKGSMR 175 (451)
Q Consensus 113 ~i~~~i~li~f~~g~~~~~~~--~p~~~~l~~------~~~vl~~a-~~~~~~~~~~~~~~~~~~~--------~~~~~~ 175 (451)
++.++++++.++..++++++. +|+++|+.. ...+.... ........+.......+.. ......
T Consensus 187 ~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (500)
T PRK09584 187 VVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFA 266 (500)
T ss_pred HHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999888877666543 233333221 11111000 0000000000000000000 000000
Q ss_pred cCCCCchhhhhhhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHHHHHHHH
Q 013020 176 LMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWI 255 (451)
Q Consensus 176 ~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l~iii~~ 255 (451)
....+..+.+-.... .. ....+|..+ +|....-..+...++|+++. |+.+|++++|++|++++++++
T Consensus 267 ~~~~~~~~~~~~~~~-~~---------~~i~f~~~~--~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~ 333 (500)
T PRK09584 267 MKGAARRKMIVAFIL-ML---------EAIIFFVLY--SQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGS 333 (500)
T ss_pred cCHHHHHHHHHHHHH-HH---------HHHHHHHHH--HHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHH
Confidence 000000000000000 00 001223211 22222211111245677776 899999999999999999999
Q ss_pred HHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHH
Q 013020 256 GLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSG 335 (451)
Q Consensus 256 pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~ 335 (451)
|++++++.++.+ + +++.+|+++|+++.+++++++++.... +.+ ...+|++|++++|+++|
T Consensus 334 p~~~~~~~~l~~----r---~~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~---------~~~vs~~~~~~~~~l~~ 393 (500)
T PRK09584 334 PILAAIYNKMGD----R---LPMPHKFAIGMVLCSGAFLVLPLGAKF----AND---------AGIVSVNWLIASYGLQS 393 (500)
T ss_pred HHHHHHHHHhCc----C---CCcHHHHHHHHHHHHHHHHHHHHHHHh----cCC---------CCccCHHHHHHHHHHHH
Confidence 999987654432 2 578999999999999999998876531 111 23699999999999999
Q ss_pred HHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCC-CcchhHHHHHHHH
Q 013020 336 LAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN-KGHYDYYYWLLTA 414 (451)
Q Consensus 336 igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln-~~~~~~~f~~la~ 414 (451)
+||++++|.+++++++++|+++||++||+|+++.++|+.+++.+.+.+.... -..+... .+.+..+|..+++
T Consensus 394 ~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~f~~~~~ 466 (500)
T PRK09584 394 IGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPD-------NVTDPLMSLEVYGRVFLQIGI 466 (500)
T ss_pred HHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------ccccchhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987654211 0001101 1226788999999
Q ss_pred HHHHHHHHHHHHhhhcCcccCCCC
Q 013020 415 LSMANFLYYLACCKAYGPFKGRVG 438 (451)
Q Consensus 415 l~lv~~~~~~~~~~~y~~~~~~~~ 438 (451)
++++.++++++.+++++|..++++
T Consensus 467 ~~~~~a~~~~~~~~~~~k~~~~~~ 490 (500)
T PRK09584 467 ATAVIAVLMLLTAPKLNRMTQDDS 490 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999877665
No 9
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.11 E-value=3.2e-08 Score=101.74 Aligned_cols=296 Identities=11% Similarity=-0.012 Sum_probs=164.1
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHH
Q 013020 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP 112 (451)
Q Consensus 33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~ 112 (451)
...+++...+.+++.|...+...+...+.+++ +++.+...++++..++|..+++.+.+++.+..+|++.|.+.
T Consensus 110 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~ 182 (417)
T PRK10489 110 LLAIYLLGLWDGFFGSLGVTALLAATPALVGR-------ENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA 182 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH-------HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence 45566666667777787778888888877754 35678888999999999999999999988888999999988
Q ss_pred HHHHHHHHHHHHhcCccEeec-CCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhhhhh
Q 013020 113 AVIMLLSALSFFLASPFYVKS-KANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMA 191 (451)
Q Consensus 113 ~i~~~i~li~f~~g~~~~~~~-~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 191 (451)
++..+++.+..+.-.+ .+.+ +++.++.....+......+++ ....+-.....
T Consensus 183 ~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~ 235 (417)
T PRK10489 183 AAGTFITLLPLLRLPA-LPPPPQPREHPLRSLLAGFRFLLASP--------------------------VVGGIALLGGL 235 (417)
T ss_pred HHHHHHHHHHHHhCCC-CCCCCcccccchHHHHHHHHHHHcCh--------------------------HHHHHHHHHHH
Confidence 8777766554432211 1110 111122211111111111100 00000000000
Q ss_pred cCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCc---hhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 013020 192 KHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSG---SFNIFAILTLTIWIGLYDRAVLPLASK 268 (451)
Q Consensus 192 ~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~---~l~~~n~l~iii~~pl~~~~~~pl~~r 268 (451)
.... . ....| + ...+... .+.++. ++.....+..++...+..++ .+|
T Consensus 236 ~~~~------~-~~~~~--------------~-p~~~~~~----~g~~~~~~g~~~~~~~~g~~ig~~~~~~l----~~~ 285 (417)
T PRK10489 236 LTMA------S-AVRVL--------------Y-PALADEV----WQMGAAQIGLLYAAVPLGAALGALTSGWL----AHS 285 (417)
T ss_pred HHHH------H-hHHHh--------------h-HHHHHhc----cCCChhHhHHHHHHHHHHHHHHHHHHHHh----hhc
Confidence 0000 0 00000 0 0000100 112222 33344444444444444332 122
Q ss_pred ccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHH
Q 013020 269 IKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEF 348 (451)
Q Consensus 269 ~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef 348 (451)
.+..+-+.++.++.+++++...+. .++++.+...++.+++.....+....+
T Consensus 286 -------~~~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~ 336 (417)
T PRK10489 286 -------ARPGLLMLLSTLGSFLAVGLFGLM----------------------PMWILAVLCLALFGYLSAISSLLQYTL 336 (417)
T ss_pred -------cCcchHHHHHHHHHHHHHHHHHcc----------------------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223455666655555433211 233444556778888888888888889
Q ss_pred hhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 013020 349 YYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCK 428 (451)
Q Consensus 349 ~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~ 428 (451)
..+..|++.||..+|++.....+|..+++.+.+.+.+.. + ....++..+++.++..++.....+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~-------------g---~~~~~~~~~~~~~~~~~~~~~~~~ 400 (417)
T PRK10489 337 LQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM-------------T---PVASASASGFGLLIIGVLLLLVLG 400 (417)
T ss_pred HHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh-------------c---hhhHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999998888888888888876665321 1 223455566666666666666656
Q ss_pred hcCcccCCC
Q 013020 429 AYGPFKGRV 437 (451)
Q Consensus 429 ~y~~~~~~~ 437 (451)
++++++.+|
T Consensus 401 ~~~~~~~~~ 409 (417)
T PRK10489 401 ELRRFRQTP 409 (417)
T ss_pred ccccccccc
Confidence 666554444
No 10
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.90 E-value=1.5e-07 Score=96.40 Aligned_cols=288 Identities=13% Similarity=0.096 Sum_probs=161.4
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+.+.++++..+.++|.|.+.|...+...|.+++ ++|.+++++.+...++|..+++.+.+++. ++||++.|.+
T Consensus 98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~ 169 (400)
T PRK11646 98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP-------HQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCAT 169 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence 456778888888999999999999998887763 46889999999999999999999999988 7899999998
Q ss_pred HHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhhhhh
Q 013020 112 PAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMA 191 (451)
Q Consensus 112 ~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 191 (451)
.++..++..+......+..+. ++..++... -+....+++ .+..+......
T Consensus 170 ~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~--------------------------~~~~~~~~~~~ 219 (400)
T PRK11646 170 GAVLFVLAAAFNAWLLPAYKL-STVRTPVRE---GMTRVLRDK--------------------------RFVTYVLTLTG 219 (400)
T ss_pred HHHHHHHHHHHHHHhCCcccc-cccchhhHH---HHHHHHcCc--------------------------hHHHHHHHHHH
Confidence 877766655443322221110 011111100 000001110 00000000000
Q ss_pred cCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHHHHHHHHHHHHHHHhhhhhhccC
Q 013020 192 KHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKG 271 (451)
Q Consensus 192 ~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~ 271 (451)
.+ +...+.. ..+ ...+.. .+ +...-..++..++.+..+.......+ +..|+
T Consensus 220 ---------------~~--~~~~~~~---~~~-p~~~~~-~~-~~~~~~g~l~~~~~~~~~~~~~~~~~----~~~~r-- 270 (400)
T PRK11646 220 ---------------YY--MLAVQVM---LML-PIMVND-IA-GSPSAVKWMYAIEACLSLTLLYPIAR----WSEKR-- 270 (400)
T ss_pred ---------------HH--HHHHHHH---Hhh-hhhHHh-hc-CCchHHHHHHHHHHHHHHHHHHHHHH----HHHHh--
Confidence 00 0000000 000 000000 01 10011122333333333222222222 22221
Q ss_pred CCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhc
Q 013020 272 KPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYT 351 (451)
Q Consensus 272 ~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~ 351 (451)
.+..+++..|+++.+++++..+... +.++.+....+.++++....|.....+.+
T Consensus 271 ----~~~~~~~~~~~~~~~~~~~~l~~~~----------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~ 324 (400)
T PRK11646 271 ----FRLEHRLMAGLLIMSLSMFPIGMVS----------------------NLQQLFTLICLFYIGSIIAEPARETLSAS 324 (400)
T ss_pred ----cchhHHHHHHHHHHHHHHHHHHHhh----------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHh
Confidence 2333456777777777765444331 12334444577889999999999999999
Q ss_pred ccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 013020 352 ELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYL 424 (451)
Q Consensus 352 ~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~ 424 (451)
.+|++.+|..+|+..+..++|..+|+.+.+...+... + .+ .....|+..++++++..+.+.
T Consensus 325 ~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~-----~-----~~--~~~~~~~~~~~~~~~~~~~~~ 385 (400)
T PRK11646 325 LADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK-----A-----LN--QPELPWMMLGIIGLITLLALY 385 (400)
T ss_pred cCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh-----h-----cC--CcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888877654320 0 01 123445556666666665544
No 11
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.88 E-value=4.1e-07 Score=89.66 Aligned_cols=264 Identities=19% Similarity=0.159 Sum_probs=174.5
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh
Q 013020 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG 110 (451)
Q Consensus 31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~ 110 (451)
.+...++++..+.+++.|...+...++..|.+++ ++|...+++.+.+.++|..+++.+.+++.++.+|+..|.
T Consensus 85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 157 (352)
T cd06174 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP-------KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFL 157 (352)
T ss_pred ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCc-------cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3467788888999999999999999999999875 257889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhhhh
Q 013020 111 VPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACM 190 (451)
Q Consensus 111 i~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 190 (451)
+.++..+++.+...... +..........-.. . . .....
T Consensus 158 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~----~-----~----------------~~~~~---- 195 (352)
T cd06174 158 ILAILGLLLALLLLFLL-------------RLLLLLALAFFLLS----F-----G----------------YYGLL---- 195 (352)
T ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH----h-----H----------------HHHHH----
Confidence 98888877766544322 11110000000000 0 0 00000
Q ss_pred hcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Q 013020 191 AKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIK 270 (451)
Q Consensus 191 ~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~ 270 (451)
.| ... +. .+.. +.. +....++.....+..++..++..++. +|.+
T Consensus 196 ----------------~~---~~~-------~~-~~~~--~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~ 239 (352)
T cd06174 196 ----------------TY---LPL-------YL-QEVL--GLS---AAEAGLLLSLFGLGGILGALLGGLLS----DRLG 239 (352)
T ss_pred ----------------HH---HHH-------HH-HHhc--CCC---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 00 000 00 0000 000 11123445555666666666665543 3322
Q ss_pred CCCCCCCcch-hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHh
Q 013020 271 GKPCQLSLKL-RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFY 349 (451)
Q Consensus 271 ~~~~~~s~~~-ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~ 349 (451)
++ + -+.++.++.+++++..... .+.++.+..+++.++++....+....++
T Consensus 240 ~~-------~~~~~~~~~~~~i~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 290 (352)
T cd06174 240 RR-------RLLLLIGLLLAALGLLLLALA----------------------PSLALLLVALLLLGFGLGFAFPALLTLA 290 (352)
T ss_pred hh-------hHHHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 11 1 3566777777776655433 1256677889999999999999999999
Q ss_pred hcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 013020 350 YTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYL 424 (451)
Q Consensus 350 ~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~ 424 (451)
.+..|++.|+..+|++.....+|..+++.+.+...+.. + ....|...+++.++..++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~------~----------~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 291 SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG------G----------YGGVFLILAALALLAALLLL 349 (352)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------C----------cchHHHHHHHHHHHHHHHhe
Confidence 99999999999999999999999999998887764210 1 23456667777776666543
No 12
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.84 E-value=2.3e-06 Score=87.46 Aligned_cols=267 Identities=14% Similarity=0.039 Sum_probs=146.4
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+.+.+++...+.+++.|...+...+...|.+++ +++.+..++.+...++|..+++.+.+++.++.+|++.|.+
T Consensus 100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~ 172 (406)
T PRK15402 100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEE-------ADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVL 172 (406)
T ss_pred cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhCh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence 345677777778888888888888888888864 2456677888888889999999999999888999999998
Q ss_pred HHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhhhhh
Q 013020 112 PAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMA 191 (451)
Q Consensus 112 ~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 191 (451)
.++..+++.+......+.-.+++++..+.....+-.....+++ ....+..+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~ 226 (406)
T PRK15402 173 FAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLVLKNR--------------------------RFVAGALALGL 226 (406)
T ss_pred HHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHcCc--------------------------HHHHHHHHHHH
Confidence 8777776655433222211111111111111111000000100 00000000000
Q ss_pred cCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCch---hhhhHHHHHHHHHHHHHHHHhhhhhh
Q 013020 192 KHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGS---FNIFAILTLTIWIGLYDRAVLPLASK 268 (451)
Q Consensus 192 ~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~---l~~~n~l~iii~~pl~~~~~~pl~~r 268 (451)
.. ........-...++ .+. . +..+.. ....-.+..++..++..++ .+|
T Consensus 227 ~~----------------~~~~~~~~~~p~~~-~~~----~----g~~~~~~g~~~~~~~~~~~~g~~~~g~l----~~r 277 (406)
T PRK15402 227 VS----------------LPLLAWIALSPVIL-ISG----E----QLSSYEYGLLQVPVFGALIAGNLTLARL----TSR 277 (406)
T ss_pred HH----------------HHHHHHHHHhHHHH-HHH----h----CCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHh
Confidence 00 00000000000000 000 0 111221 1111112222223333332 233
Q ss_pred ccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHH
Q 013020 269 IKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEF 348 (451)
Q Consensus 269 ~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef 348 (451)
. ...+-+.+|.++.+++.+...+.... ...+.+|++...++.++++....+.....
T Consensus 278 ~-------~~~~~~~~~~~~~~~g~~~~~~~~~~-----------------~~~~~~~~~~~~~~~g~g~~~~~~~~~~~ 333 (406)
T PRK15402 278 R-------PLRSLIRMGLWPMVAGLLLAALATVI-----------------SSHAYLWLTAGLSLYAFGIGLANAGLYRL 333 (406)
T ss_pred c-------CHHHHHHHHHHHHHHHHHHHHHHHHc-----------------ccccHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 1 22233566777777776665554210 12467778888899999999988877776
Q ss_pred hhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhcc
Q 013020 349 YYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDD 385 (451)
Q Consensus 349 ~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~ 385 (451)
... ++++.+|.+.+++.+...+|..+|+.+.+.+.+
T Consensus 334 ~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~ 369 (406)
T PRK15402 334 TLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL 369 (406)
T ss_pred Hhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 654 455899999999999999999999888877653
No 13
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.84 E-value=1.7e-07 Score=97.76 Aligned_cols=62 Identities=15% Similarity=-0.022 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
+.++++...++.+++.....+...+.+.+..|++.++..+|+......+|+.+++.+.+.+.
T Consensus 332 ~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~ 393 (455)
T TIGR00892 332 DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLV 393 (455)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeee
Confidence 34556667788999999999999999999999999999999999999999999998887654
No 14
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.83 E-value=1.3e-06 Score=87.36 Aligned_cols=86 Identities=12% Similarity=0.177 Sum_probs=73.9
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+.+.++++..+.++|.|...+...++..|.+++ ++|.+.++++....++|.++++.+.+++.++.+|++.|.+
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 153 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPA-------SERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFII 153 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH-------HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 567788888999999999999999999998864 4688999999999999999999999998889999999998
Q ss_pred HHHHHHHHHHHHH
Q 013020 112 PAVIMLLSALSFF 124 (451)
Q Consensus 112 ~~i~~~i~li~f~ 124 (451)
.++..++..+..+
T Consensus 154 ~~~~~~~~~~~~~ 166 (399)
T TIGR00893 154 EGVLGIIWGVLWL 166 (399)
T ss_pred HHHHHHHHHHHhh
Confidence 8777666555443
No 15
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.82 E-value=5.4e-07 Score=89.64 Aligned_cols=266 Identities=12% Similarity=-0.005 Sum_probs=153.8
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+.+.++++..+.+++.|...|...++.+|.+++ ++|.+.++++..+.++|.++++.+.+++.+..||++.|.+
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~ 163 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPE-------EQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV 163 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 567788899999999999999999999998874 4688999999999999999999999999889999999998
Q ss_pred HHHHHHHHHHHHHhcCccEeecCCCCCchh-HHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhhhh
Q 013020 112 PAVIMLLSALSFFLASPFYVKSKANTSLLP-GLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACM 190 (451)
Q Consensus 112 ~~i~~~i~li~f~~g~~~~~~~~p~~~~l~-~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 190 (451)
.++..+++.+..+.-+..-.+ +++..+.. ...+-.....+. ... ......+-....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------~~~----------~~~~~~~~~~~~ 220 (365)
T TIGR00900 164 DAVGFAISALLIVSVRIPELA-ASEIQALSNAVLRDTREGIKF------------VLK----------NPLLRTLLLLAL 220 (365)
T ss_pred HHHHHHHHHHHHHhcccccCC-CccccccchhHHHHHHhHHHH------------HHc----------CcHHHHHHHHHH
Confidence 887776665544332211100 10111111 000000000000 000 000000000000
Q ss_pred hcCCCCCCCCCCCCCCCCCcchhHHHH-HHHHHHHHhhccCcCCCCccccCc---hhhhhHHHHHHHHHHHHHHHHhhhh
Q 013020 191 AKHPEQDLTPDGRASNPNSLCTVEQVE-ELKALIKASSMDRHVTPNFEIPSG---SFNIFAILTLTIWIGLYDRAVLPLA 266 (451)
Q Consensus 191 ~~~~~~~~~~~~~~~~~w~l~~~~~v~-~~k~~~~~~~md~~~~~g~~ip~~---~l~~~n~l~iii~~pl~~~~~~pl~ 266 (451)
... ....... ..-..+..+. .+.++. .+.....+..++..++..++ .
T Consensus 221 ~~~-----------------~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ 271 (365)
T TIGR00900 221 LFN-----------------LVFAPAIVALFPYVQSKY--------LGRGSTHYGWVLAAFGLGALLGALLLGLL----G 271 (365)
T ss_pred HHH-----------------HHHHHHHHHHhHHHHHHH--------hCCchHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 000 0000000 0000000000 112222 23333334444444444432 2
Q ss_pred hhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhH
Q 013020 267 SKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQT 346 (451)
Q Consensus 267 ~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ 346 (451)
+|. ...+-+..++++.+++++...+.. + +.++.+...++.+++.....+...
T Consensus 272 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--------------------~-~~~~~~~~~~~~g~~~~~~~~~~~ 323 (365)
T TIGR00900 272 RYF-------KRMALMTGAIFVIGLAILVVGLTP--------------------P-NFPLFLVLWFAIGVGYGPINVPQG 323 (365)
T ss_pred HHh-------chhHHHHHHHHHHHHHHHHHHhhc--------------------h-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 111223445555555554433221 1 355566778999999999999999
Q ss_pred HHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 347 EFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 347 ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
.+..+..|++.||..+|++.....+|..+++.+.+.+.
T Consensus 324 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~ 361 (365)
T TIGR00900 324 TLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA 361 (365)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888776653
No 16
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.80 E-value=2e-06 Score=87.81 Aligned_cols=84 Identities=23% Similarity=0.184 Sum_probs=70.4
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+...+.++..+.++|.|...|...+...|.+++ ++|....++++.+.++|.++++.+...+.+..+|+..|.+
T Consensus 102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 174 (406)
T PRK11551 102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGP-------RLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYV 174 (406)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 456677788888999999999999999998864 4688899999999999999999988888888999999998
Q ss_pred HHHHHHHHHHH
Q 013020 112 PAVIMLLSALS 122 (451)
Q Consensus 112 ~~i~~~i~li~ 122 (451)
.++..++..+.
T Consensus 175 ~~~~~~~~~~~ 185 (406)
T PRK11551 175 GGVGPLLLVPL 185 (406)
T ss_pred HHHHHHHHHHH
Confidence 77765555443
No 17
>PRK03545 putative arabinose transporter; Provisional
Probab=98.79 E-value=2.4e-06 Score=86.93 Aligned_cols=282 Identities=12% Similarity=0.061 Sum_probs=159.3
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+...++++..+.+++.|.+-|...++..|.+++ ++|.+.++++..+.++|..+++.+.+.+.+++||++.|.+
T Consensus 96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 168 (390)
T PRK03545 96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPA-------GKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLA 168 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-------hhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHH
Confidence 456677777788888888888888999998874 3678899999999999999999999999889999999999
Q ss_pred HHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhhhhh
Q 013020 112 PAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMA 191 (451)
Q Consensus 112 ~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 191 (451)
.++..++..+......++-+ +++.++.+. .....|++. +..+......
T Consensus 169 ~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~--------------------------~~~~~~~~~~ 216 (390)
T PRK03545 169 IGGGALITLLLLIKLLPLLP--SEHSGSLKS----LPLLFRRPA--------------------------LVSLYLLTVV 216 (390)
T ss_pred HHHHHHHHHHHHHHhCCCCC--CCCcchHHH----HHHHHhCcH--------------------------HHHHHHHHHH
Confidence 88766665544332222111 111111111 111111110 0000000000
Q ss_pred cCCCCCCCCCCCCCCCCCcchhHHHHH-HHHHHHHhhccCcCCCCccccCc---hhhhhHHHHHHHHHHHHHHHHhhhhh
Q 013020 192 KHPEQDLTPDGRASNPNSLCTVEQVEE-LKALIKASSMDRHVTPNFEIPSG---SFNIFAILTLTIWIGLYDRAVLPLAS 267 (451)
Q Consensus 192 ~~~~~~~~~~~~~~~~w~l~~~~~v~~-~k~~~~~~~md~~~~~g~~ip~~---~l~~~n~l~iii~~pl~~~~~~pl~~ 267 (451)
.. ........ ...++ .+. . ..+++ ++.....+.-++..++..++ .+
T Consensus 217 ~~-----------------~~~~~~~~~~~~~l----~~~-~----g~s~~~~~~~~~~~~~~~~~g~~~~g~l----~d 266 (390)
T PRK03545 217 VV-----------------TAHFTAYSYIEPFV----QQV-A----GLSENFATLLLLLFGGAGIIGSVLFSRL----GN 266 (390)
T ss_pred HH-----------------HHHHHHHHHHHHHH----HHh-c----CCCccHHHHHHHHHHHHHHHHHHHHHHH----hh
Confidence 00 00000000 00001 010 1 12222 22223333333333333332 22
Q ss_pred hccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHH
Q 013020 268 KIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTE 347 (451)
Q Consensus 268 r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~e 347 (451)
|. . .+++.++..+.++++...... ..+.++++...++.+++.....+....
T Consensus 267 r~-------~-~~~~~~~~~~~~~~~~~l~~~---------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~ 317 (390)
T PRK03545 267 RH-------P-SGFLLIAIALLLVCLLLLLPA---------------------ANSEWHLSVLSIFWGIAIMCIGLAMQV 317 (390)
T ss_pred cc-------c-hhHHHHHHHHHHHHHHHHHHH---------------------hchHHHHHHHHHHHHHHHhcchHHHHH
Confidence 21 1 234556666555554433221 123455666778889999888888778
Q ss_pred HhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 013020 348 FYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACC 427 (451)
Q Consensus 348 f~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~ 427 (451)
.+.+.+|+ .++.++|++.....+|..+|+.+.+.+.+. .| +...|+..+++.+++.++++...
T Consensus 318 ~~~~~~~~-~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~-------------~g---~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 318 KVLKLAPD-ATDVAMALFSGIFNIGIGAGALLGNQVSLH-------------LG---LSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------cC---hhHHHHHHHHHHHHHHHHHHHHc
Confidence 88888885 778999988877788888887776655421 11 34567778888877777765554
Q ss_pred h
Q 013020 428 K 428 (451)
Q Consensus 428 ~ 428 (451)
|
T Consensus 381 ~ 381 (390)
T PRK03545 381 R 381 (390)
T ss_pred c
Confidence 3
No 18
>PRK12382 putative transporter; Provisional
Probab=98.77 E-value=2.2e-06 Score=87.21 Aligned_cols=273 Identities=12% Similarity=0.089 Sum_probs=155.0
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+...++++-.+.++|.+..-|...+.+.|.+++ ++|.++.+++..+.++|..+++.+.+++.+.+||+..+.+
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~ 183 (392)
T PRK12382 111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGP-------KHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT 183 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc-------cccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 456677777888889888888888888887753 3577788899999999999999998998888999877665
Q ss_pred HHHHHHHHHHHHHhcCccEeecCCCC---CchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhh
Q 013020 112 PAVIMLLSALSFFLASPFYVKSKANT---SLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKA 188 (451)
Q Consensus 112 ~~i~~~i~li~f~~g~~~~~~~~p~~---~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 188 (451)
..+..++.+. ..+ +.++.+++. .++++..+.+ .+ + ....+-..
T Consensus 184 ~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~---~~------~---------------------~~~~~l~~ 229 (392)
T PRK12382 184 TMVLPLLAWA---FNG-TVRKVPAHAGERPSLWSVVGLI---WK------P---------------------GLGLALQG 229 (392)
T ss_pred HHHHHHHHHH---HHH-hccCCCCCcccCchHHHHHHHH---HH------h---------------------HHHHHHHH
Confidence 5443332222 111 111111111 1111111000 00 0 00000000
Q ss_pred hhhcCCCCCCCCCCCCCCCCCcchhHHHHHH-HHHHHHhhccCcCCCCccccCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 013020 189 CMAKHPEQDLTPDGRASNPNSLCTVEQVEEL-KALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLAS 267 (451)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~-k~~~~~~~md~~~~~g~~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~ 267 (451)
.. ...+... ...+ . +. ++. +.........+..++..++..++ .+
T Consensus 230 ~~----------------------~~~~~~~~~~~~--~--~~----~~~-~~~~~~~~~~~~~~~~~~~~g~l----~~ 274 (392)
T PRK12382 230 VG----------------------FAVIGTFVSLYF--A--SK----GWA-MAGFTLTAFGGAFVLMRVLFGWM----PD 274 (392)
T ss_pred HH----------------------HhHHHHHHHHHH--H--hc----CCc-hhHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 00 0000000 0000 0 11 111 11122223333334444444443 23
Q ss_pred hccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHH
Q 013020 268 KIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTE 347 (451)
Q Consensus 268 r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~e 347 (451)
|. ...+-+.++..+.+++++...+. -+.++.+...++.++++....|....
T Consensus 275 r~-------g~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~ 325 (392)
T PRK12382 275 RF-------GGVKVAIVSLLVETVGLLLLWLA----------------------PTAWVALAGAALTGAGCSLIFPALGV 325 (392)
T ss_pred hc-------CCCeehHHHHHHHHHHHHHHHHc----------------------ccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 32 22233556666666666543322 12345556778899999998888888
Q ss_pred HhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 013020 348 FYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLA 425 (451)
Q Consensus 348 f~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~ 425 (451)
.+.+.+|++.||..+|++.....+|+.+++.+.+.+.+.. + +...|...+++.++..++.+.
T Consensus 326 ~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~------g----------~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 326 EVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF------G----------YPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------C----------chHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999989999999888777654321 2 245566777777666665443
No 19
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.75 E-value=4.6e-06 Score=85.00 Aligned_cols=277 Identities=12% Similarity=0.028 Sum_probs=152.1
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHH
Q 013020 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP 112 (451)
Q Consensus 33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~ 112 (451)
...++++..+.++|.|...++..+...+.+++ ++|.+..+++..+.++|..+++.+.+++.+..||+..|.++
T Consensus 112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 184 (399)
T PRK05122 112 LLLLLLGRLLLGIGESLAGTGSILWGIGRVGA-------LHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI 184 (399)
T ss_pred HHHHHHHHHHHHhhHHhhcchHHHHHHhhcCh-------hhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 44566777788899999999999988888764 34667888889999999999999888888889999888776
Q ss_pred HHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhhhhhc
Q 013020 113 AVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAK 192 (451)
Q Consensus 113 ~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~ 192 (451)
++..++.++.. ++ .++.++..++.....+.+....+. .. ...+.....
T Consensus 185 ~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~----------~~----------------~~~~~~~~~-- 232 (399)
T PRK05122 185 MLLALLGLLLA---RP-RPAVPPVKGERLPFRRVLGRVWPY----------GM----------------GLALASIGF-- 232 (399)
T ss_pred HHHHHHHHHHH---hc-CCCCCCCCccchhHHHHHHHHHHH----------HH----------------HHHHHHHHH--
Confidence 65443333221 11 111111111100000000000000 00 000000000
Q ss_pred CCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHHHHHHHHHHHHHHHhhhhhhccCC
Q 013020 193 HPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGK 272 (451)
Q Consensus 193 ~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~ 272 (451)
......-..+ .. +. ++. ..........+..++..++..++ .+|.
T Consensus 233 ---------------------~~~~~~~~~~-~~--~~----~~~-~~~~~~~~~~~~~~~~~~~~g~l----~~r~--- 276 (399)
T PRK05122 233 ---------------------GTIATFITLY-YA--AR----GWD-GAALALTLFGVAFVGARLLFGNL----INRL--- 276 (399)
T ss_pred ---------------------HHHHHHHHHH-HH--Hc----ccc-cchHHHHHHHHHHHHHHHHHHHH----HHHh---
Confidence 0000000000 00 11 110 11122223333333333333332 3332
Q ss_pred CCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcc
Q 013020 273 PCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTE 352 (451)
Q Consensus 273 ~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~ 352 (451)
...+-+.++.++.+++++..... .+.++++...++.+++.....|.....+.+.
T Consensus 277 ----~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~ 330 (399)
T PRK05122 277 ----GGLRVAIVSLLVEILGLLLLWLA----------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKR 330 (399)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 22223455666666665544322 2344556667899999998888888888889
Q ss_pred cCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 013020 353 LPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLAC 426 (451)
Q Consensus 353 aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~ 426 (451)
.|++.+|..+|++.....+|..+++.+.+.+.+.. + +...|+..+++.++..++.+..
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~------g----------~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 331 VPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF------G----------YPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------C----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888888888777665553210 1 3455666666666655544433
No 20
>PRK10054 putative transporter; Provisional
Probab=98.75 E-value=1.2e-06 Score=89.63 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHH
Q 013020 34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 113 (451)
Q Consensus 34 ~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~ 113 (451)
..+++...+++.+.+.+.|...+..+|.+++ ++|.+.+++.|...|+|..+++.+.+++.+ .+|+..|.+.+
T Consensus 97 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~ 168 (395)
T PRK10054 97 TLVVLFFALINCAYSVFSTVLKAWFADNLSS-------TSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAA 168 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHH
Confidence 3344444455566666777788888887753 468889999999999999999999888774 79999999988
Q ss_pred HHHHHHHHH
Q 013020 114 VIMLLSALS 122 (451)
Q Consensus 114 i~~~i~li~ 122 (451)
+..+++++.
T Consensus 169 ~~~~i~~i~ 177 (395)
T PRK10054 169 ICSAFPLVF 177 (395)
T ss_pred HHHHHHHHH
Confidence 887777544
No 21
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.73 E-value=3.3e-06 Score=89.05 Aligned_cols=86 Identities=14% Similarity=0.093 Sum_probs=69.7
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeee-ccCccchh
Q 013020 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD-NLGWKVGF 109 (451)
Q Consensus 31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~-~~g~~~~F 109 (451)
.+...+++...+.+++.+...+...++..|.+++ ++|.++..+.-++.++|.++++.+..++.+ ..||+..|
T Consensus 105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~-------~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f 177 (491)
T PRK11010 105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPA-------EERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMY 177 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 3466677777788888999999999999998874 356777888889999999999988888887 57999999
Q ss_pred hHHHHHHHHHHHHH
Q 013020 110 GVPAVIMLLSALSF 123 (451)
Q Consensus 110 ~i~~i~~~i~li~f 123 (451)
.+.++.+++..+..
T Consensus 178 ~i~a~l~ll~~l~~ 191 (491)
T PRK11010 178 WLMAALLIPCIIAT 191 (491)
T ss_pred HHHHHHHHHHHHHH
Confidence 99887766665543
No 22
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=98.71 E-value=1.1e-06 Score=89.50 Aligned_cols=273 Identities=10% Similarity=0.048 Sum_probs=152.7
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+.+.++++..+.+.+.+..-|...++..+ ++ +++...+.+.....++|..+++.+.+++.+++||+..|.+
T Consensus 93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~--------~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~ 163 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFSAGMPIGDALANT-WQ--------KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAI 163 (382)
T ss_pred hHHHHHHHHHHHHHHHccchhHHHHHHHH-HH--------HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 45667777777777777777777776533 22 2456678899999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCccEeecCCCCCc---hhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhh
Q 013020 112 PAVIMLLSALSFFLASPFYVKSKANTSL---LPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKA 188 (451)
Q Consensus 112 ~~i~~~i~li~f~~g~~~~~~~~p~~~~---l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 188 (451)
.++...+.++.+.. .+.. +|+++. ..+..+-.....|+ ..+..+-..
T Consensus 164 ~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~l~~--------------------------~~~~~~l~~ 213 (382)
T TIGR00902 164 LTAGLAFMLIGFLI-KPTI---PPKDAIPEDESQGDSAFIALLKN--------------------------PMNLRFLAA 213 (382)
T ss_pred HHHHHHHHHHHHHc-CCCC---CCCccccccccccchhHHHHHcC--------------------------hHHHHHHHH
Confidence 76654443333322 1111 111100 00000000000000 000000000
Q ss_pred hhhcCCCCCCCCCCCCCCCCCcchhHHHHH-HHHHHHHhhccCcCCCCccccCchh---hhhHHHHHHHHHHHHHHHHhh
Q 013020 189 CMAKHPEQDLTPDGRASNPNSLCTVEQVEE-LKALIKASSMDRHVTPNFEIPSGSF---NIFAILTLTIWIGLYDRAVLP 264 (451)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~-~k~~~~~~~md~~~~~g~~ip~~~l---~~~n~l~iii~~pl~~~~~~p 264 (451)
..... ........ ...++ .| . ..++.+. ..++.+..++..++.+++
T Consensus 214 ~~l~~-----------------~~~~~~~~~~~~~l----~~--~----g~s~~~~g~l~~~~~~~~i~~~~~~~~l--- 263 (382)
T TIGR00902 214 VCLIQ-----------------GAHAAYYGFSAIYW----QA--A----GISASATGLLWGIGVLAEIIIFAFSNKL--- 263 (382)
T ss_pred HHHHH-----------------HHHHHHHHHHHHHH----HH--C----CCCHhHHHHHHHHHHHHHHHHHHHhHHH---
Confidence 00000 00000000 00011 11 1 1233332 333444444443443333
Q ss_pred hhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhh
Q 013020 265 LASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIG 344 (451)
Q Consensus 265 l~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~ 344 (451)
.+| .++.+-+.+|.++.++.+...++. .++++++..-+++++...+..+.
T Consensus 264 -~~r-------~g~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~q~l~g~~~~~~~~~ 313 (382)
T TIGR00902 264 -FQN-------CSARDLLLISAIACVGRWAIIGAI----------------------EAFPLIFLLQILHCGTFAVCHLA 313 (382)
T ss_pred -Hhh-------CCHHHHHHHHHHHHHHHHHHHHhH----------------------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 343 344444667888888777665433 23455555559999999999999
Q ss_pred hHHHhhcccCchhhhHHHHHHh-HHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 013020 345 QTEFYYTELPKSMSSIASTLSG-AGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL 421 (451)
Q Consensus 345 g~ef~~~~aP~~~kg~~~g~~~-l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~ 421 (451)
.+.++.++ |++.++..+|++. ...++|..+++.+++...+. + + ...|+..+++++++.+
T Consensus 314 ~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~-------------~--g--~~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 314 AMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT-------------L--G--AGTFVFMAIIAAAAFF 373 (382)
T ss_pred HHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------c--c--HHHHHHHHHHHHHHHH
Confidence 99999988 9999999999975 45677777777777665421 1 1 2457778888776543
No 23
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.71 E-value=3e-06 Score=86.26 Aligned_cols=84 Identities=14% Similarity=0.085 Sum_probs=64.8
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+.+.++++..+.+++.+. -|...+...+++++ ++|....+++..+.++|.++++.+.+++.+..+|+..|.+
T Consensus 106 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 177 (408)
T PRK09874 106 NIWQFLILRALLGLLGGF-VPNANALIATQVPR-------NKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFI 177 (408)
T ss_pred hHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCH-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 355666777777777554 46667777777653 3567888899999999999999999999888999999998
Q ss_pred HHHHHHHHHHHH
Q 013020 112 PAVIMLLSALSF 123 (451)
Q Consensus 112 ~~i~~~i~li~f 123 (451)
.++..++..+..
T Consensus 178 ~~~~~~~~~~~~ 189 (408)
T PRK09874 178 TASVLFLCFLVT 189 (408)
T ss_pred HHHHHHHHHHHH
Confidence 887776665543
No 24
>PRK10504 putative transporter; Provisional
Probab=98.69 E-value=9.5e-06 Score=84.67 Aligned_cols=87 Identities=9% Similarity=0.092 Sum_probs=71.9
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+...++++..+.++|.|..-|...+.+.|.+++ +++.+.+.++....++|..+++.+.+++.++.||++.|.+
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~ 169 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR-------EQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLI 169 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHH
Confidence 456677888899999999999988888887753 4577889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 013020 112 PAVIMLLSALSFFL 125 (451)
Q Consensus 112 ~~i~~~i~li~f~~ 125 (451)
......++.+....
T Consensus 170 ~~~~~~l~~~~~~~ 183 (471)
T PRK10504 170 NIPVGIIGAIATLM 183 (471)
T ss_pred HHHHHHHHHHHHHH
Confidence 87766666555443
No 25
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.65 E-value=4e-06 Score=86.38 Aligned_cols=85 Identities=21% Similarity=0.274 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhh---heeeeccCccchh
Q 013020 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI---VYIQDNLGWKVGF 109 (451)
Q Consensus 33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~---~~i~~~~g~~~~F 109 (451)
.+.++++..+.++|.|..-+...++.+|.+++ ++|....++++.+.++|.++++.+. ..+.+..+|++.|
T Consensus 127 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f 199 (481)
T TIGR00879 127 VEMLIVGRVLLGIGVGIASALVPMYLSEIAPK-------ALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199 (481)
T ss_pred hHHHHHHHHHHHhhhhHHHhHHHHHHHccCCh-------hhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 45788889999999999999999999998874 3577889999999999999999988 7777889999999
Q ss_pred hHHHHHHHHHHHHHH
Q 013020 110 GVPAVIMLLSALSFF 124 (451)
Q Consensus 110 ~i~~i~~~i~li~f~ 124 (451)
.+.++..++.++..+
T Consensus 200 ~~~~~~~~~~~~~~~ 214 (481)
T TIGR00879 200 GLQLIPAGLLFLGLF 214 (481)
T ss_pred HHHHHHHHHHHHHHh
Confidence 997766666554443
No 26
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.64 E-value=4.5e-07 Score=89.87 Aligned_cols=85 Identities=24% Similarity=0.285 Sum_probs=76.4
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+.+.++++..+.++|.|...+...++..|.++++ +|...+++...+.++|..+++.+.+++.++.+|++.|.+
T Consensus 84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~ 156 (352)
T PF07690_consen 84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPE-------ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLI 156 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHH
T ss_pred hHHHHhhhccccccccccccccccccccccchhh-------hhhhccccccchhhhhhhcccchhhhhhhcccccccccc
Confidence 3457889999999999999999999999999862 578899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 013020 112 PAVIMLLSALSF 123 (451)
Q Consensus 112 ~~i~~~i~li~f 123 (451)
.++..+++.++.
T Consensus 157 ~~~~~~~~~il~ 168 (352)
T PF07690_consen 157 SAILSLIAAILF 168 (352)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccchhhhhhhhH
Confidence 999988887753
No 27
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.63 E-value=1.3e-05 Score=85.06 Aligned_cols=267 Identities=15% Similarity=0.069 Sum_probs=160.6
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh
Q 013020 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG 110 (451)
Q Consensus 31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~ 110 (451)
.+.+.+++...++++|.+++.|.-.+++.+..++ ++...+.++.-...|+.-++||.+++.+-...|-.+.|.
T Consensus 101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~-------~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~ 173 (524)
T PF05977_consen 101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK-------EDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFL 173 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 4567788888899999999999999999999875 357888899999999999999999999888889899999
Q ss_pred HHHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhhhh
Q 013020 111 VPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACM 190 (451)
Q Consensus 111 i~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 190 (451)
+.+++.+++++.+..-++... ++..+-.+..+-++...+--.. .+ .....+-....
T Consensus 174 inalsfl~~i~~l~~~~~~~~---~~~~~~e~~~~~l~~G~ryv~~-~~--------------------~l~~~l~~~~~ 229 (524)
T PF05977_consen 174 INALSFLISILALLRWKPPPP---PSSLPRERFFSALREGLRYVRS-SP--------------------PLRSVLLRSFL 229 (524)
T ss_pred HHHHHHHHHHHHHHHcccccc---ccccchhhhhhhHHHHHHHHhc-ch--------------------HHHHHHHHHHH
Confidence 999988887666554333221 1111111122222222211000 00 00001111111
Q ss_pred hcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Q 013020 191 AKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIK 270 (451)
Q Consensus 191 ~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~ 270 (451)
.... ....|.+ --++..+.+ +..+..+..+...+ -..-+...++.+.++++
T Consensus 230 ~~l~---------~~a~~aL---------lPl~a~~~l--------~~~a~~yGll~a~~--gvGai~Gal~~~~l~~~- 280 (524)
T PF05977_consen 230 FNLF---------ASAVWAL---------LPLFARDVL--------GGGASGYGLLLAAF--GVGAILGALLLPRLRRR- 280 (524)
T ss_pred HHHh---------hhHHHHh---------hhHHHHHHh--------CCcHHHHHHHHHHH--HHHHHHHHHHHHHhhcc-
Confidence 0000 0001110 000101111 12344444333322 23344444455544542
Q ss_pred CCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 013020 271 GKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYY 350 (451)
Q Consensus 271 ~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~ 350 (451)
.+.-+-+..+.++.+++++.+++. -+.+..++..++.|++-..........+-
T Consensus 281 -----~~~~~lv~~~~~~~a~~~~~lal~----------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q 333 (524)
T PF05977_consen 281 -----LSSRRLVLLASLLFALALLLLALS----------------------PSFWLALIALFLAGAAWIIANSSLNTLVQ 333 (524)
T ss_pred -----cCcchhhHHHHHHHHHHHHHHhcc----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566777777666655433 23455667888999999999999889999
Q ss_pred cccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 351 TELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 351 ~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
+.+|+.++|..++++......+..+|..+.+.+.
T Consensus 334 ~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 334 LSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred HhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988766666666665555543
No 28
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.63 E-value=3.1e-06 Score=98.20 Aligned_cols=282 Identities=10% Similarity=-0.044 Sum_probs=156.7
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh
Q 013020 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG 110 (451)
Q Consensus 31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~ 110 (451)
.+.+.++++..+.++|.+++.|...+++.|.+++ +++..+.+++.++.++|.++|+.+++++....||++.|.
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~-------~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~ 178 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNK-------DELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVA 178 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCc-------cccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3577889999999999999999999999999985 357889999999999999999999999999999999985
Q ss_pred HHHHHHHHHHHHHHhcCccEeecCCC----CCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhh
Q 013020 111 VPAVIMLLSALSFFLASPFYVKSKAN----TSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLN 186 (451)
Q Consensus 111 i~~i~~~i~li~f~~g~~~~~~~~p~----~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (451)
+.++..++++++.+.-.+ ....++. .++.......+....+++ .+..+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~ 231 (1140)
T PRK06814 179 LLMGIAVLGWLASLFIPK-TGNAAPDLKIDRNIIRSTITLLKYAKADK--------------------------RIWLAI 231 (1140)
T ss_pred HHHHHHHHHHHHHhhCCC-CCCCCCCCeeccchHHHHHHHHHHHhcCc--------------------------hHHHHH
Confidence 444444444333222111 1111111 111111111111111110 000000
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccC---chhhhhHHHHHHHHHHHHHHHHh
Q 013020 187 KACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPS---GSFNIFAILTLTIWIGLYDRAVL 263 (451)
Q Consensus 187 ~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~---~~l~~~n~l~iii~~pl~~~~~~ 263 (451)
..... .|... ..... .+ -..+...+ ..++ .++.+...+..++...+..++.
T Consensus 232 ~~~~~---------------~~~~~--~~~~~---~~-p~~~~~~~----g~~~~~~g~~~~~~~~g~~ig~~~~g~l~- 285 (1140)
T PRK06814 232 LGISW---------------FWLVG--AVVLS---QL-PLLAKETL----GGDENVATLFLAVFSVGVAVGSFLASKLS- 285 (1140)
T ss_pred HHHHH---------------HHHHH--HHHHH---Hh-HHHHHHHc----CCchHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 00000 00000 00000 00 00011011 1222 3344555555555555555542
Q ss_pred hhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhh
Q 013020 264 PLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMI 343 (451)
Q Consensus 264 pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p 343 (451)
+++ ...+.+.+|.++.+++.+.+++.-.. .......+..-..-....+.|++++.++++|++..+..+
T Consensus 286 ---~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 353 (1140)
T PRK06814 286 ---EGR-------ITLLYVPIGALLMGLFGLDLAFASSS--VPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIV 353 (1140)
T ss_pred ---CCc-------eeeeeehHHHHHHHHHHHHHHhcccc--cccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHH
Confidence 221 11223455555555544433332000 000000000000000114556677888999999999999
Q ss_pred hhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 344 GQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 344 ~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
....++.+.+|++.+|.++|++.+...+|..+++.+...+.
T Consensus 354 ~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 354 PLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred HHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999989998888888776664
No 29
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.62 E-value=1.4e-05 Score=83.32 Aligned_cols=84 Identities=10% Similarity=0.104 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeec-cCccchhhH
Q 013020 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKVGFGV 111 (451)
Q Consensus 33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~-~g~~~~F~i 111 (451)
...+++.-.+.++|.|..-|......++.+++ ++|..+..+++.+.++|..+++.+++++.+. .||+..|.+
T Consensus 131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i 203 (465)
T TIGR00894 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPP-------KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYV 203 (465)
T ss_pred chHHHHHHHHHHHhcccchhhHHHHHHhcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhh
Confidence 45577777888999999999999999988764 4688899999999999999999999999888 499999999
Q ss_pred HHHHHHHHHHHH
Q 013020 112 PAVIMLLSALSF 123 (451)
Q Consensus 112 ~~i~~~i~li~f 123 (451)
.++..++..+.+
T Consensus 204 ~~~~~~~~~~~~ 215 (465)
T TIGR00894 204 FGIVGCAWSLLW 215 (465)
T ss_pred hhHHHHHHHHHH
Confidence 877665554433
No 30
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.60 E-value=1.3e-06 Score=88.68 Aligned_cols=88 Identities=13% Similarity=0.253 Sum_probs=75.7
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccC-ccchh
Q 013020 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGF 109 (451)
Q Consensus 31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g-~~~~F 109 (451)
.+.+.+.+.-.++++|.+..-|-.+++++|.|++ ++|.+.|.||||+|++|+.+|....+++.+.-+ |+++|
T Consensus 119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~-------~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af 191 (493)
T KOG1330|consen 119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPD-------DKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAF 191 (493)
T ss_pred HHHHHHHHHHHHhccchhhhcccchhHhhhcCcc-------hhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEE
Confidence 5667777788899999999999999999999986 478999999999999999999999999988877 99999
Q ss_pred hHHHHHHHHHH-HHHHh
Q 013020 110 GVPAVIMLLSA-LSFFL 125 (451)
Q Consensus 110 ~i~~i~~~i~l-i~f~~ 125 (451)
...++.+++.. ++|++
T Consensus 192 ~~~avl~vi~~~L~~~f 208 (493)
T KOG1330|consen 192 RGSAVLGVIVGLLVFLF 208 (493)
T ss_pred EeehHHHHHHHHHHHhh
Confidence 98877665554 44554
No 31
>TIGR00898 2A0119 cation transport protein.
Probab=98.55 E-value=2.3e-05 Score=82.50 Aligned_cols=83 Identities=19% Similarity=0.185 Sum_probs=64.7
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+...+++...+.++|.|+.-+...++.+|.+++ ++|.....++..+.++|.++++.+...+.+ |++.|.+
T Consensus 179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~ 248 (505)
T TIGR00898 179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPK-------KQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLA 248 (505)
T ss_pred cHHHHHHHHHHHHhhccchHHHHHHHhheecCh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHH
Confidence 356677777888899999999999999998875 346667777888899999999877666654 9999998
Q ss_pred HHHHHHHHHHHHH
Q 013020 112 PAVIMLLSALSFF 124 (451)
Q Consensus 112 ~~i~~~i~li~f~ 124 (451)
.++..++..+..+
T Consensus 249 ~~i~~~~~~~~~~ 261 (505)
T TIGR00898 249 VSLPTFLFFLLSW 261 (505)
T ss_pred HHHHHHHHHHHHH
Confidence 8877666655443
No 32
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.53 E-value=2.1e-05 Score=82.12 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=72.8
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+...++++..+.++|.|...|...+++.|.+++ ++|..++.+++.+.++|..+++.+.+++.+++||++.|.+
T Consensus 89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~ 161 (485)
T TIGR00711 89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP-------EKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI 161 (485)
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhh
Confidence 456778888888999999999999999999864 4678899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHH
Q 013020 112 PAVIMLLSALSFF 124 (451)
Q Consensus 112 ~~i~~~i~li~f~ 124 (451)
.+...++.++..+
T Consensus 162 ~~~~~~~~~~~~~ 174 (485)
T TIGR00711 162 NVPIGIIVVVVAF 174 (485)
T ss_pred hhHHHHHHHHHHH
Confidence 7766555554433
No 33
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.51 E-value=1.4e-05 Score=84.27 Aligned_cols=87 Identities=13% Similarity=0.045 Sum_probs=71.8
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh
Q 013020 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG 110 (451)
Q Consensus 31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~ 110 (451)
.+...++++-.+.++|.|++.|...+.+.+.+.++ ++|..+++++....++|..++|.+.+++.++.||++.|.
T Consensus 92 ~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~------~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~ 165 (495)
T PRK14995 92 PTASWLIATRALLAIGAAMIVPATLAGIRATFTEE------KQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFL 165 (495)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHH
Confidence 35677888888999999999888888887776432 468889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 013020 111 VPAVIMLLSALSF 123 (451)
Q Consensus 111 i~~i~~~i~li~f 123 (451)
+.....++.+++.
T Consensus 166 i~~~~~~~~~~l~ 178 (495)
T PRK14995 166 INVPIVLVVMGLT 178 (495)
T ss_pred HHHHHHHHHHHHH
Confidence 8766555554443
No 34
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.50 E-value=3.6e-05 Score=77.41 Aligned_cols=87 Identities=17% Similarity=0.148 Sum_probs=73.2
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+...++++..+.++|.|..-+...++..|.+++ ++|...+.+++...++|..+++.+.+++.++.+|+..|.+
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 164 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPG-------EELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF 164 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 456677788888999999999999999998863 4678899999999999999999999999889999999998
Q ss_pred HHHHHHHHHHHHHh
Q 013020 112 PAVIMLLSALSFFL 125 (451)
Q Consensus 112 ~~i~~~i~li~f~~ 125 (451)
.++..++..+..+.
T Consensus 165 ~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 165 LSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHH
Confidence 87777666555443
No 35
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.50 E-value=4e-05 Score=78.92 Aligned_cols=111 Identities=13% Similarity=0.113 Sum_probs=71.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccc
Q 013020 243 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM 322 (451)
Q Consensus 243 l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~ 322 (451)
+..+..+..++..|+..++ .+|.++ .+-+.+|+++.+++++...+.. -
T Consensus 262 ~~~~~~i~~ii~~~~~~~l----~~r~g~-------~~~~~~~~~~~~~~~~~~~~~~---------------------~ 309 (437)
T TIGR00792 262 MGSIAIVAGLIGVLLFPRL----VKKFGR-------KILFAGGILLMVLGYLIFFFAG---------------------S 309 (437)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhCc-------HHHHHHHHHHHHHHHHHHHHcc---------------------h
Confidence 3344455555555655544 344321 2235566666666665543321 1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccC-------chhhhHHHHHHhHHHHHHHHHHHHHhhhhcc
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVDD 385 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP-------~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~ 385 (451)
+.++.+...++.+++.....+...++..+.+| ++.+|.++|++.+...+|..+++.+.+.+-+
T Consensus 310 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 310 NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344556678889998888888888887765 6778999999999888888888887776543
No 36
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.47 E-value=1.2e-05 Score=81.62 Aligned_cols=81 Identities=11% Similarity=0.037 Sum_probs=61.6
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+.+.+++...+.+++.+...|...+...+. . +++...+++..+..++|..+++.+.+++.+++||+..|.+
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~--------~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~ 163 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW-Q--------KQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI 163 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHH-H--------hhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 456666777777888888888777776654 2 1345566777888899999999999999999999999988
Q ss_pred HHHHHHHHHH
Q 013020 112 PAVIMLLSAL 121 (451)
Q Consensus 112 ~~i~~~i~li 121 (451)
.++..++..+
T Consensus 164 ~~~~~~~~~~ 173 (382)
T PRK11128 164 LTAGVASMLL 173 (382)
T ss_pred HHHHHHHHHH
Confidence 7765555544
No 37
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.46 E-value=1.7e-05 Score=83.25 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=67.6
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+.+.++++..+.+++.|+..+...++..|.+++ ++|...+++++.+.++|.++++.+.+++.+++||++.|.+
T Consensus 107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~ 179 (496)
T PRK03893 107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPK-------HLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI 179 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 456778888888999999999999999998874 4677888999999999999999999999999999999987
Q ss_pred HHHHHHH
Q 013020 112 PAVIMLL 118 (451)
Q Consensus 112 ~~i~~~i 118 (451)
.++..++
T Consensus 180 ~~~~~~~ 186 (496)
T PRK03893 180 GILPIIF 186 (496)
T ss_pred HHHHHHH
Confidence 6554443
No 38
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.45 E-value=4.1e-05 Score=79.94 Aligned_cols=86 Identities=16% Similarity=0.122 Sum_probs=67.2
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhee--------eec
Q 013020 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI--------QDN 102 (451)
Q Consensus 31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i--------~~~ 102 (451)
.....++++-.+.++|.|+.-|...++++|.+++ ++|.....++-.+..+|.++++.+..++ .++
T Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~-------~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 190 (479)
T PRK10077 118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPA-------HIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNT 190 (479)
T ss_pred hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCCh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc
Confidence 3456677888999999999999999999999885 3567788888888999999887654433 246
Q ss_pred cCccchhhHHHHHHHHHHHHH
Q 013020 103 LGWKVGFGVPAVIMLLSALSF 123 (451)
Q Consensus 103 ~g~~~~F~i~~i~~~i~li~f 123 (451)
.||++.|.+.++..++.++..
T Consensus 191 ~gWr~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 191 DGWRYMFASEAIPALLFLMLL 211 (479)
T ss_pred CChHHHHHHHHHHHHHHHHHH
Confidence 799999998877766655443
No 39
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.44 E-value=0.0001 Score=74.21 Aligned_cols=86 Identities=16% Similarity=0.182 Sum_probs=71.4
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+...+++...+.+++.|...+...++..|.+++ ++|.+.+++++.+.++|..+++.+.+++.+..+|++.|.+
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 150 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPK-------EEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWV 150 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 345677777888899999999999999998764 3578899999999999999999999999888999999998
Q ss_pred HHHHHHHHHHHHH
Q 013020 112 PAVIMLLSALSFF 124 (451)
Q Consensus 112 ~~i~~~i~li~f~ 124 (451)
.++..++..+...
T Consensus 151 ~~~~~~~~~~~~~ 163 (377)
T PRK11102 151 LALAAILAAALVF 163 (377)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666655443
No 40
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.44 E-value=6.3e-05 Score=75.49 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHH
Q 013020 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP 112 (451)
Q Consensus 33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~ 112 (451)
...+++.-.+.+.+.+..-|...++..+..+++ . +.+.....+.+.+.++|..+++.+.+++.+..||++.|.+.
T Consensus 87 ~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~ 161 (375)
T TIGR00899 87 YFLLLVLGVLLSSFASTANPQLFALAREHADRT-G----REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA 161 (375)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc-c----hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence 344444444455555556666666666654321 1 11222357788889999999999999998899999999998
Q ss_pred HHHHHHHHHHHH
Q 013020 113 AVIMLLSALSFF 124 (451)
Q Consensus 113 ~i~~~i~li~f~ 124 (451)
++..++..+..+
T Consensus 162 ~~~~~~~~~~~~ 173 (375)
T TIGR00899 162 ALAFVLCGVLVW 173 (375)
T ss_pred HHHHHHHHHHHH
Confidence 887766655443
No 41
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.44 E-value=7.6e-05 Score=77.28 Aligned_cols=80 Identities=10% Similarity=0.157 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHH
Q 013020 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP 112 (451)
Q Consensus 33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~ 112 (451)
...+++...+.+++.|..-+...+.+.+.+++ ++|.....+++.+.++|..+++.+.+++.+.+||++.|.+.
T Consensus 111 ~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~ 183 (434)
T PRK11663 111 LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR-------TERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA 183 (434)
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 44555555667788888888888999998864 46788999999999999999999999998899999999987
Q ss_pred HHHHHHH
Q 013020 113 AVIMLLS 119 (451)
Q Consensus 113 ~i~~~i~ 119 (451)
++..++.
T Consensus 184 ~i~~~~~ 190 (434)
T PRK11663 184 GIIAIVV 190 (434)
T ss_pred HHHHHHH
Confidence 7655444
No 42
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.43 E-value=5e-06 Score=87.20 Aligned_cols=83 Identities=14% Similarity=0.069 Sum_probs=68.5
Q ss_pred HHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHHHH
Q 013020 36 LYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVI 115 (451)
Q Consensus 36 ~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~i~ 115 (451)
..+.+.+++++.+.......++..|+.+ +++ +......++.|.+.++|.++++.+.+++.+.++|+..|.+.++.
T Consensus 123 ~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~----~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l 197 (468)
T TIGR00788 123 AAAFIFLAALAKALYDVLVDSLYSERIR-ESP----SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAAL 197 (468)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC----CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 3346788999999999999999999988 333 24455778999999999999999999999999999999998888
Q ss_pred HHHHHHHH
Q 013020 116 MLLSALSF 123 (451)
Q Consensus 116 ~~i~li~f 123 (451)
.++..+..
T Consensus 198 ~ll~~~~~ 205 (468)
T TIGR00788 198 LLLQLFVS 205 (468)
T ss_pred HHHHHHHH
Confidence 77774433
No 43
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.42 E-value=7.5e-05 Score=76.38 Aligned_cols=85 Identities=20% Similarity=0.155 Sum_probs=65.4
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeec-cCccchhh
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKVGFG 110 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~-~g~~~~F~ 110 (451)
+.+.+++...+.++..+...|...++..+.+++ ++|.++..+..++.++|..+++.+..++.+. .||+..|.
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~-------~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~ 165 (402)
T PRK11902 93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP-------EERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYL 165 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-------hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHH
Confidence 445555555566777888999999999998764 3577788888899999999998877777765 59999999
Q ss_pred HHHHHHHHHHHHH
Q 013020 111 VPAVIMLLSALSF 123 (451)
Q Consensus 111 i~~i~~~i~li~f 123 (451)
+.++..++..+..
T Consensus 166 i~a~~~l~~~l~~ 178 (402)
T PRK11902 166 LMAGLMLAGALTT 178 (402)
T ss_pred HHHHHHHHHHHHH
Confidence 9887766655543
No 44
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.42 E-value=1.2e-05 Score=80.49 Aligned_cols=86 Identities=19% Similarity=0.044 Sum_probs=67.6
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccC-------
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG------- 104 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g------- 104 (451)
+...+++...+.+++.+...+...+++.|.+++ ++|..+.++...+.++|.++++.+.+++..+.|
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~ 154 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSD-------EELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLIT 154 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 344455544566677788888889999998854 357888899999999999999988888877777
Q ss_pred -ccchhhHHHHHHHHHHHHHH
Q 013020 105 -WKVGFGVPAVIMLLSALSFF 124 (451)
Q Consensus 105 -~~~~F~i~~i~~~i~li~f~ 124 (451)
|+..|.+.++..++++++.+
T Consensus 155 ~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 155 LWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 99999999887777665543
No 45
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.36 E-value=7.8e-05 Score=76.54 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=66.9
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+...++++-.+.++|.|..-+...++..|.+++ ++|..+.+++..+.++|.++++.+.+++.+.+||++.|.+
T Consensus 105 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i 177 (426)
T PRK12307 105 GVIMLTLSRFIVGMGMAGEYACASTYAVESWPK-------HLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV 177 (426)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCH-------hHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence 456788888899999999999999999998864 3577788899999999999999888998899999999998
Q ss_pred HHHHHH
Q 013020 112 PAVIML 117 (451)
Q Consensus 112 ~~i~~~ 117 (451)
+.+..+
T Consensus 178 ~~~~~~ 183 (426)
T PRK12307 178 GLLPVL 183 (426)
T ss_pred HHHHHH
Confidence 655443
No 46
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.34 E-value=4.7e-05 Score=88.29 Aligned_cols=64 Identities=9% Similarity=0.051 Sum_probs=55.5
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeec
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN 102 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~ 102 (451)
..+.+++...+.+++.|.+-|...++++|.+++ ++|..+++++..+.++|.++++.+.+++.+.
T Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK-------ENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc-------ccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367788888899999999999999999999875 3578899999999999999999988887655
No 47
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.34 E-value=0.00013 Score=75.13 Aligned_cols=84 Identities=14% Similarity=0.102 Sum_probs=67.9
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+...++++..+.++|.|..-+.......|.|++ +++.+..+++..+.++|..+++.+.+++.++.||++.|.+
T Consensus 103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~ 175 (413)
T PRK15403 103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQ-------TKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI 175 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 456778888888888887666666777787764 3567789999999999999999999999888999999998
Q ss_pred HHHHHHHHHHH
Q 013020 112 PAVIMLLSALS 122 (451)
Q Consensus 112 ~~i~~~i~li~ 122 (451)
.++..+++++.
T Consensus 176 ~~~~~~i~~~~ 186 (413)
T PRK15403 176 IAVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHHH
Confidence 88777666554
No 48
>TIGR00895 2A0115 benzoate transport.
Probab=98.34 E-value=4e-05 Score=77.08 Aligned_cols=84 Identities=20% Similarity=0.174 Sum_probs=70.4
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+.+.++++..+.++|.|...+...++.+|.+++ ++|...++++..+.++|..+++.+.+++.++.||+..|.+
T Consensus 104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~ 176 (398)
T TIGR00895 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK-------RFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYV 176 (398)
T ss_pred chHHHHHHHHHHhcccccchhhHHHHHHHHcCH-------HhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhh
Confidence 456678888899999999999999999998864 3578889999999999999999999999999999999998
Q ss_pred HHHHHHHHHHH
Q 013020 112 PAVIMLLSALS 122 (451)
Q Consensus 112 ~~i~~~i~li~ 122 (451)
.++..++..++
T Consensus 177 ~~~~~~~~~~~ 187 (398)
T TIGR00895 177 GGIAPLLLLLL 187 (398)
T ss_pred hhhHHHHHHHH
Confidence 86554444433
No 49
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.31 E-value=6.3e-05 Score=74.97 Aligned_cols=84 Identities=19% Similarity=0.132 Sum_probs=62.6
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+...++++..+.++|.|..-+...+...+.++ ++|.....++..+.++|.++++.+.+.+.+..||++.|.+
T Consensus 90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~ 161 (377)
T TIGR00890 90 SLAALYLTYGLASAGVGIAYGIALNTAVKWFP--------DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIY 161 (377)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC--------cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHH
Confidence 45667777778888888777777777666664 2467788999999999998766566666677899999998
Q ss_pred HHHHHHHHHHHH
Q 013020 112 PAVIMLLSALSF 123 (451)
Q Consensus 112 ~~i~~~i~li~f 123 (451)
.++..++..+..
T Consensus 162 ~~~~~~~~~~~~ 173 (377)
T TIGR00890 162 MGIIFLLVIVLG 173 (377)
T ss_pred HHHHHHHHHHHH
Confidence 887666655443
No 50
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.31 E-value=7e-05 Score=76.05 Aligned_cols=80 Identities=16% Similarity=0.010 Sum_probs=63.3
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+...+.++-.+.++|.|.. ++..+..++.+++ ++|.+..+++..+.++|..+++.+.+++.+++||+..|.+
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~-------~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~ 149 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIRE-------ERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIP 149 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 5677888888889999864 4444555776653 4688899999999999999999999999999999999988
Q ss_pred HHHHHHHH
Q 013020 112 PAVIMLLS 119 (451)
Q Consensus 112 ~~i~~~i~ 119 (451)
.++.-++.
T Consensus 150 ~~~l~~~~ 157 (368)
T TIGR00903 150 IAAVAAAG 157 (368)
T ss_pred HHHHHHHH
Confidence 55544333
No 51
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.28 E-value=0.00021 Score=72.50 Aligned_cols=72 Identities=6% Similarity=-0.091 Sum_probs=56.2
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG 110 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~ 110 (451)
+...++++..+.++|.|.+.|...+...+.+.+ ++|.+.+++++.+.|+|..+++.+.+++.+...+...+.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 164 (381)
T PRK03633 93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS-------RNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWV 164 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH
Confidence 456777888888899998888777777776643 357889999999999999999999998877654444443
No 52
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.27 E-value=0.00034 Score=71.10 Aligned_cols=84 Identities=17% Similarity=0.091 Sum_probs=67.9
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+...++++..+.++|.|..-+...++..|.+++ ++|.+.+++++...++|..+++.+.+++.+..||+..|.+
T Consensus 90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~ 162 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD-------RRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYT 162 (392)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHH
Confidence 345566777778888888888888888888864 4678899999999999999999888888888999999998
Q ss_pred HHHHHHHHHHH
Q 013020 112 PAVIMLLSALS 122 (451)
Q Consensus 112 ~~i~~~i~li~ 122 (451)
.++..++..+.
T Consensus 163 ~~~~~~i~~~~ 173 (392)
T PRK10473 163 MAAMGILVLLL 173 (392)
T ss_pred HHHHHHHHHHH
Confidence 87766655544
No 53
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.25 E-value=0.00014 Score=76.23 Aligned_cols=327 Identities=10% Similarity=0.061 Sum_probs=172.8
Q ss_pred hHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhee--eec---------
Q 013020 34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI--QDN--------- 102 (451)
Q Consensus 34 ~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i--~~~--------- 102 (451)
..+.+++.+.-++.....+...++++|..++++. +.+.++.|+.+.+|+|+.+++.+.++. .+.
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~-----~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~ 189 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR-----RTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC 189 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence 4556666677778888888889999999986543 456899999999999999999877654 111
Q ss_pred ----cCccchhhHHHHHHHHHHHHHHhcCccEeecCCCC-----------CchhHHHHHHHHHHHhcCCCCCCcccchhh
Q 013020 103 ----LGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANT-----------SLLPGLTQVLVASFKNRRTKLPTQATEEMY 167 (451)
Q Consensus 103 ----~g~~~~F~i~~i~~~i~li~f~~g~~~~~~~~p~~-----------~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~ 167 (451)
.+++..|.++++.++++.++-...-|.++..+++. ......++-+..++++ .|. .++
T Consensus 190 ~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----mP~----~m~ 261 (477)
T TIGR01301 190 GVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAFKY----LPR----PVW 261 (477)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHHHH----CCH----HHH
Confidence 15678999999988888777665444332110000 0000111111222221 110 000
Q ss_pred ccCCCccccCCCCchhhhhhhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCc---CCCCccccCchhh
Q 013020 168 HHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRH---VTPNFEIPSGSFN 244 (451)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~---~~~g~~ip~~~l~ 244 (451)
. +.....+.|+..-.. | +|..+.+.+. ++++ -|.. ...|.++ .+|-.
T Consensus 262 ~-------l~~vqffsW~a~f~~-----------------~-~y~T~~vg~~--v~~~--~~~~~~~y~~gvr~-G~~~l 311 (477)
T TIGR01301 262 I-------LLLVTCLNWIAWFPF-----------------I-LFDTDWMGRE--VYGG--SVNQGAKYDDGVRA-GAFGL 311 (477)
T ss_pred H-------HHHHHHHHHHHHHHH-----------------H-HhccHHHHHH--HcCC--CCcchhHHHHHHHH-HHHHH
Confidence 0 000001122211110 0 0111111100 0000 0000 0001111 12223
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhh-hHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccch
Q 013020 245 IFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRM-GIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMS 323 (451)
Q Consensus 245 ~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki-~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s 323 (451)
..|.+... +++.++.++.||.+ ..++. .++.++.++|++...++.....+..+.++. + ..-..+..
T Consensus 312 ~~~s~~~~----i~s~~l~~l~~~~g-------~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~-~-~~~~~~~~ 378 (477)
T TIGR01301 312 MLNSVVLG----ITSIGMEKLCRGWG-------AGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGD-G-ESLPPPTG 378 (477)
T ss_pred HHHHHHHH----HHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHHHHHhhhhcccccccc-c-cccCcchh
Confidence 34444433 33333333344432 11233 688888888888877664211000000000 0 00001222
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhhHHHhhcccCc--hhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCC
Q 013020 324 -AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK--SMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI 400 (451)
Q Consensus 324 -~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~--~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~l 400 (451)
.++.+..+.++|++=......=++++++..|+ +-.|.+||+...+..+...+.++..+.++.. +.+
T Consensus 379 ~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~---------~g~-- 447 (477)
T TIGR01301 379 IKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQL---------FGG-- 447 (477)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH---------cCC--
Confidence 36677788999999999999999999999995 4559999999999999999988766665432 111
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 013020 401 NKGHYDYYYWLLTALSMANFLYYLACCKAY 430 (451)
Q Consensus 401 n~~~~~~~f~~la~l~lv~~~~~~~~~~~y 430 (451)
+..+.+.+-++.++++++.-+..-+|-
T Consensus 448 ---~~~~~~~~~gv~~~~aa~~~~~~~~~~ 474 (477)
T TIGR01301 448 ---GNLPAFVVGAVAAFVSGLLALILLPRP 474 (477)
T ss_pred ---CCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence 123345555556666666555555443
No 54
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.25 E-value=0.00054 Score=70.05 Aligned_cols=84 Identities=18% Similarity=0.289 Sum_probs=71.4
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh
Q 013020 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG 110 (451)
Q Consensus 31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~ 110 (451)
.+.+.+++...+.+++.|..-|...++..|.+++ ++|..+..+++.+.|+|..+++.+.+++.+..||++.|.
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~ 178 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPP-------RTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFN 178 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 4567788888899999999999999999998864 467889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 013020 111 VPAVIMLLSAL 121 (451)
Q Consensus 111 i~~i~~~i~li 121 (451)
+.++..++.++
T Consensus 179 ~~~~l~~~~~l 189 (394)
T PRK10213 179 AAAVMGVLCIF 189 (394)
T ss_pred HHHHHHHHHHH
Confidence 87765554443
No 55
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.21 E-value=0.00011 Score=75.62 Aligned_cols=136 Identities=10% Similarity=0.098 Sum_probs=83.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 321 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~ 321 (451)
++..++.+..++..++..++ .+|.+ ..+-+.++.++.+++++..++.
T Consensus 266 ~~~~~~~~~~~~~~~~~g~l----~dr~g-------~~~~~~~~~~l~~~~~~l~~~~---------------------- 312 (420)
T PRK09528 266 YLNSFQVFLEALIMFFAPFI----INRIG-------AKNALLLAGTIMAVRIIGSGFA---------------------- 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhC-------cchhhHHHHHHHHHHHHHHHhc----------------------
Confidence 34444555444555555544 34432 2223556666666665554432
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHH-HhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCC
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL-SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI 400 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~-~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~l 400 (451)
.++++++...++.+++.....+...+++.+..|++.++...+. +.....+|..+++.+.+...+.. +
T Consensus 313 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~------G------ 380 (420)
T PRK09528 313 TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI------G------ 380 (420)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh------C------
Confidence 2356677778888988888888888999999999999887654 55556777777777665544311 2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHH
Q 013020 401 NKGHYDYYYWLLTALSMANFLYYLAC 426 (451)
Q Consensus 401 n~~~~~~~f~~la~l~lv~~~~~~~~ 426 (451)
+...|..++++.++..++.+..
T Consensus 381 ----~~~~f~~~~~~~~i~~~~~~~~ 402 (420)
T PRK09528 381 ----FQGTYLILGGIVLLFTLISVFT 402 (420)
T ss_pred ----chHHHHHHHHHHHHHHHHHHHH
Confidence 2345666777766666555443
No 56
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.21 E-value=0.0002 Score=74.05 Aligned_cols=308 Identities=15% Similarity=0.112 Sum_probs=165.4
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhee----eecc---C
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI----QDNL---G 104 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i----~~~~---g 104 (451)
....+++...+..++...+.-+..+++.|..++.+ +|.+..++..+..++|.++...+.+.+ .+.. +
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~------~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~ 175 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD------ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNG 175 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHh------hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchH
Confidence 33445666667788888899999999999876543 467788888888888887555444443 3221 5
Q ss_pred ccchhhHHHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhh
Q 013020 105 WKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRF 184 (451)
Q Consensus 105 ~~~~F~i~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (451)
|.+.+.+.++..++..++.....|.-..+.++..+.....+.++...++| .++.
T Consensus 176 ~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr--------------------------~~~~ 229 (428)
T PF13347_consen 176 YRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSLRSLFRNR--------------------------PFRI 229 (428)
T ss_pred HHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccccchhhhcccc--------------------------hHHH
Confidence 77777766666666655555544431011111111111111111111111 0111
Q ss_pred hhhhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHHHHHHHHHHHHHHHhh
Q 013020 185 LNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLP 264 (451)
Q Consensus 185 l~~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l~iii~~pl~~~~~~p 264 (451)
+-.+..... ..+.+.. ..-..+....+.. +=-.+.+.....+..++..|+..++
T Consensus 230 l~~~~~~~~------------~~~~~~~-----~~~~y~~~~vl~~------~~~~~~~~~~~~~~~~v~~~~~~~l--- 283 (428)
T PF13347_consen 230 LLLAFFLQW------------LAFALMN-----TFLPYYFTYVLGN------EGLISIFMLIFFVASIVGSPLWGRL--- 283 (428)
T ss_pred HHHHHHHHH------------hhhhhhh-----hHHHHHHHHHhcC------chhhHHHHHHHHHHHHHHHHHHHHH---
Confidence 110000000 0000000 0000000000110 1001222333344445555555444
Q ss_pred hhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhh
Q 013020 265 LASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIG 344 (451)
Q Consensus 265 l~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~ 344 (451)
.+|.++ .+-+.+|.++.+++.+...+.. +.+.+|.++..++.+++-....+.
T Consensus 284 -~~r~gk-------~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~i~~~l~gi~~~~~~~~ 335 (428)
T PF13347_consen 284 -SKRFGK-------KKVYIIGLLLAALGFLLLFFLG--------------------PGSPWLVLILFILAGIGYGAFFVI 335 (428)
T ss_pred -HHHccc-------eeehhhhHHHHHHHHHHHHHHH--------------------hhhHHHHHHHHHHhHhhhcccccc
Confidence 344322 2245677888887777766552 256788888899999999999988
Q ss_pred hHHHhhcccC-------chhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCC--CCCCcchhHHHHHHHHH
Q 013020 345 QTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPS--NINKGHYDYYYWLLTAL 415 (451)
Q Consensus 345 g~ef~~~~aP-------~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~--~ln~~~~~~~f~~la~l 415 (451)
..++..+..+ ++..|.++|++.+..-+|..+++.+...+-... ++-++ +.++.........++.+
T Consensus 336 ~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~------Gy~~~~~~q~~~~~~~i~~~~~~~ 409 (428)
T PF13347_consen 336 PWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV------GYDANAAVQSASALSGIRILFSIV 409 (428)
T ss_pred cccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh------CcCCCcCcCCHHHHHHHHHHHHHH
Confidence 8888888776 466899999999999999988888777654332 22221 12222344444455555
Q ss_pred HHHHHHHHHHHhhhcC
Q 013020 416 SMANFLYYLACCKAYG 431 (451)
Q Consensus 416 ~lv~~~~~~~~~~~y~ 431 (451)
.++..++-.++.++|+
T Consensus 410 p~~~~~~~~i~~~~y~ 425 (428)
T PF13347_consen 410 PAIFLLLAIIFMRFYP 425 (428)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 5555555556666664
No 57
>PRK09848 glucuronide transporter; Provisional
Probab=98.21 E-value=0.00016 Score=75.14 Aligned_cols=86 Identities=14% Similarity=0.069 Sum_probs=64.1
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCch--
Q 013020 279 KLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS-- 356 (451)
Q Consensus 279 ~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~-- 356 (451)
.+-+.+|+++.+++++...+.. ..+.++.+...++.++|+.+..+...++..+.+|++
T Consensus 294 ~~~~~~g~~~~~i~~~~~~~~~--------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~ 353 (448)
T PRK09848 294 KNTFLIGALLGTCGYLLFFWVS--------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEY 353 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3446678777777765543220 134555666778899999999999999998888754
Q ss_pred -----hhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 357 -----MSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 357 -----~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
.+|.++|++.+..-+|..+++.+.+.+-
T Consensus 354 ~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 354 LTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred hhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999998888888887776543
No 58
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.21 E-value=0.00053 Score=70.00 Aligned_cols=84 Identities=10% Similarity=0.081 Sum_probs=64.7
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeecc-Cccchhh
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL-GWKVGFG 110 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~-g~~~~F~ 110 (451)
+...++++-.+.++|.|..-+.......+.|++ +|.....++..+.++|..+++.+.+++.++. +|+..|.
T Consensus 96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~--------~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~ 167 (393)
T PRK09705 96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ--------RTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLA 167 (393)
T ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccc--------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 455678888899999999999999998888752 3567888888899999999999888888775 8988877
Q ss_pred HHHHHHHHHHHHH
Q 013020 111 VPAVIMLLSALSF 123 (451)
Q Consensus 111 i~~i~~~i~li~f 123 (451)
+-++..++.+..+
T Consensus 168 ~~~~~~~~~~~~~ 180 (393)
T PRK09705 168 WWALPAVVALFAW 180 (393)
T ss_pred HHHHHHHHHHHHH
Confidence 6554444444333
No 59
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.19 E-value=0.0006 Score=69.53 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=48.6
Q ss_pred cccccchhhhcccCCCCCCCcchhhHHHHH-HHHHHHHHHHHHHHhhhhheeeeccCccchhhHHHHHHHHHHHHHH
Q 013020 49 GIRSSSLAFGAEQLDKGDGTKSKGALQSYF-SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 124 (451)
Q Consensus 49 ~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F-~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~i~~~i~li~f~ 124 (451)
..-|...++..|..+++ . +....+ ++...+.++|..+++.+.+++.++.||+..|.+.++..++..+..+
T Consensus 121 ~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 191 (393)
T PRK15011 121 TANPQMFALAREHADKT-G-----REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVW 191 (393)
T ss_pred hhHHHHHHHHHHHhhhc-c-----chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 44555556565544321 1 122234 5888899999999999999999999999999988776655554433
No 60
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.19 E-value=0.00082 Score=68.69 Aligned_cols=77 Identities=22% Similarity=0.265 Sum_probs=62.3
Q ss_pred HHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHHHHH
Q 013020 37 YFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIM 116 (451)
Q Consensus 37 ~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~i~~ 116 (451)
++...+.++|.|++-|...+++.|.+++ ++|.++.++.....++|..+||.+++++.+. .|+..|.+.+...
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~-------~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~ 163 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPG-------EKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIY 163 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4556678999999999999999999985 4688999999999999999999998888764 3777777766555
Q ss_pred HHHHH
Q 013020 117 LLSAL 121 (451)
Q Consensus 117 ~i~li 121 (451)
+++.+
T Consensus 164 ~~~~~ 168 (393)
T PRK11195 164 LLAAL 168 (393)
T ss_pred HHHHH
Confidence 55443
No 61
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.19 E-value=0.00033 Score=71.09 Aligned_cols=84 Identities=11% Similarity=0.158 Sum_probs=67.4
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+.+.++++..+.++|.|..-+....+..+.+++ ++|.+.+.++..+.++|..+++.+.+++.+..||++.|.+
T Consensus 90 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~ 162 (382)
T PRK10091 90 SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP-------GKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL 162 (382)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh-------HHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence 467778888888888888877777777776653 3566788888899999999999888999889999999999
Q ss_pred HHHHHHHHHHH
Q 013020 112 PAVIMLLSALS 122 (451)
Q Consensus 112 ~~i~~~i~li~ 122 (451)
.++..++..+.
T Consensus 163 ~~~~~~~~~~~ 173 (382)
T PRK10091 163 IAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHHHH
Confidence 88766655543
No 62
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.17 E-value=0.0011 Score=67.27 Aligned_cols=83 Identities=14% Similarity=0.108 Sum_probs=64.8
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+...++++..+.++|.|...+....+..|.+++ +++....+++..+.++|.++++.+.+++.++.||+..|.+
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~ 167 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG-------TQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLF 167 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 456677777788888887777777777777653 3567778888899999999999999999888999999998
Q ss_pred HHHHHHHHHH
Q 013020 112 PAVIMLLSAL 121 (451)
Q Consensus 112 ~~i~~~i~li 121 (451)
.++..++..+
T Consensus 168 ~~~~~~~~~~ 177 (394)
T PRK11652 168 LLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHH
Confidence 7765554433
No 63
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.16 E-value=0.00026 Score=73.11 Aligned_cols=94 Identities=13% Similarity=0.146 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHh-HHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCc
Q 013020 325 MWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG-AGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKG 403 (451)
Q Consensus 325 ~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~-l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~ 403 (451)
+.++...++.++++.+..+....++.+.+|++.||.++|+.. ...++|..+++.+.+...+.....+..+
T Consensus 309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~--------- 379 (418)
T TIGR00889 309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFD--------- 379 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCc---------
Confidence 334556789999999999999999999999999999999996 5678888888887766543210000001
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhh
Q 013020 404 HYDYYYWLLTALSMANFLYYLACCK 428 (451)
Q Consensus 404 ~~~~~f~~la~l~lv~~~~~~~~~~ 428 (451)
++.-|...+++.++..++++.+.+
T Consensus 380 -~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 380 -WQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344566677777766666655554
No 64
>PRK03699 putative transporter; Provisional
Probab=98.15 E-value=0.0012 Score=67.35 Aligned_cols=86 Identities=12% Similarity=0.117 Sum_probs=66.2
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhee-eeccCccchhh
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI-QDNLGWKVGFG 110 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i-~~~~g~~~~F~ 110 (451)
+...+++...+.+++.|...+...+...+.+++ ++|....+..+...++|+.+++.+.+++ .++.||++.|.
T Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~ 166 (394)
T PRK03699 94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEG-------KQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYA 166 (394)
T ss_pred hHHHHHHHHHHHHHhhHhhccchhHHhhhhccc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 456677788888899999899999999998853 2466677777888899999998887765 45689999999
Q ss_pred HHHHHHHHHHHHHH
Q 013020 111 VPAVIMLLSALSFF 124 (451)
Q Consensus 111 i~~i~~~i~li~f~ 124 (451)
+.++..++..+..+
T Consensus 167 ~~~~~~~~~~~~~~ 180 (394)
T PRK03699 167 CIGLVYVAIFILTL 180 (394)
T ss_pred HHHHHHHHHHHHHH
Confidence 87776665554433
No 65
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.11 E-value=3.1e-05 Score=84.09 Aligned_cols=229 Identities=7% Similarity=-0.092 Sum_probs=155.2
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchh-
Q 013020 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGF- 109 (451)
Q Consensus 31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F- 109 (451)
.+.+...++++.++++.+|.+++.+++.++|.+..++ +++++.+++|||..+.+.+.+.+..........+.-+|
T Consensus 80 ~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~----~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg 155 (654)
T TIGR00926 80 GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE----RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFG 155 (654)
T ss_pred ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3466778899999999999999999999999998776 77888999999999999998765444444333454333
Q ss_pred ------hHHHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchh
Q 013020 110 ------GVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLR 183 (451)
Q Consensus 110 ------~i~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (451)
+..++.+++.++.++.....++..++.+.+.+.+.+++...+...+
T Consensus 156 ~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~---------------------------- 207 (654)
T TIGR00926 156 CQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR---------------------------- 207 (654)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH----------------------------
Confidence 3778888888888999888787767765554445555433322210
Q ss_pred hhhhhhhhcCCCCCCCCCCCCCCCCCcch--hHHHHHHHHHHHHhhc-------------------------cCcCCCCc
Q 013020 184 FLNKACMAKHPEQDLTPDGRASNPNSLCT--VEQVEELKALIKASSM-------------------------DRHVTPNF 236 (451)
Q Consensus 184 ~l~~a~~~~~~~~~~~~~~~~~~~w~l~~--~~~v~~~k~~~~~~~m-------------------------d~~~~~g~ 236 (451)
.+.... . ......|..+. ...+++++...+-..+ ++..+ .+
T Consensus 208 --~~~~~~--~-------~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~-~l 275 (654)
T TIGR00926 208 --KRFSTR--S-------EHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG-DV 275 (654)
T ss_pred --HhhccC--C-------cccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-cc
Confidence 000000 0 00011222111 1112334443222221 11111 23
Q ss_pred cccCchhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHh
Q 013020 237 EIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSI 306 (451)
Q Consensus 237 ~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~ 306 (451)
...+...+.++++-+++++|+...+.+|++++..++ -++++++.-+.+..+++.+.+++++..+...
T Consensus 276 ~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~ 342 (654)
T TIGR00926 276 GGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKV 342 (654)
T ss_pred CCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567889999999999999999999999998654 5789999999999999999999999877665
No 66
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.10 E-value=0.00016 Score=75.92 Aligned_cols=83 Identities=8% Similarity=0.080 Sum_probs=54.7
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheee----e-----c
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ----D-----N 102 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~----~-----~ 102 (451)
+...+++...+.++|.|..-+ ....+++.+++ ++|..+..+.+...|+|+.+++.+.+.+. + .
T Consensus 123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~-------~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 194 (476)
T PLN00028 123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNG-------KIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSF 194 (476)
T ss_pred CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcCh-------hheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 345566666677777776533 34456777753 35677888888788888887765554432 1 2
Q ss_pred cCccchhhHHHHHHHHHHHH
Q 013020 103 LGWKVGFGVPAVIMLLSALS 122 (451)
Q Consensus 103 ~g~~~~F~i~~i~~~i~li~ 122 (451)
.||++.|.+.++..++..+.
T Consensus 195 ~gWr~~f~i~g~l~l~~~l~ 214 (476)
T PLN00028 195 TAWRIAFFVPGLLHIIMGIL 214 (476)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 58999999988766555443
No 67
>PRK11043 putative transporter; Provisional
Probab=98.09 E-value=0.00075 Score=68.78 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=67.8
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+...++++..+.++|.|...+...++..|.+++ +++.+.++......++|..+++.+.+++.+++||+..|.+
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~ 165 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPA-------QKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFAT 165 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 456667777777888887777778888888764 3567788888889999999999999999999999999998
Q ss_pred HHHHHHHHHHHH
Q 013020 112 PAVIMLLSALSF 123 (451)
Q Consensus 112 ~~i~~~i~li~f 123 (451)
.++..++..+..
T Consensus 166 ~~~~~~~~~~~~ 177 (401)
T PRK11043 166 LFAITLLLILPT 177 (401)
T ss_pred HHHHHHHHHHHH
Confidence 877666665543
No 68
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.09 E-value=0.0016 Score=67.89 Aligned_cols=83 Identities=11% Similarity=0.051 Sum_probs=60.5
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHH-HHHhhhhheeeeccCccchhh
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS-IVAVTCIVYIQDNLGWKVGFG 110 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa-~i~~~~~~~i~~~~g~~~~F~ 110 (451)
....+++...+.+++.|...|.......+.+++ ++|..+.++++.+.++|. +++++....+....||+++|.
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~ 191 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALY 191 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHHHHHHHhCCh-------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHH
Confidence 355667777788888888888888888887764 357889999999999986 556654333333459999999
Q ss_pred HHHHHHHHHHH
Q 013020 111 VPAVIMLLSAL 121 (451)
Q Consensus 111 i~~i~~~i~li 121 (451)
+.++..++..+
T Consensus 192 i~~~~~~~~~~ 202 (452)
T PRK11273 192 MPAFAAILVAL 202 (452)
T ss_pred HHHHHHHHHHH
Confidence 98776655433
No 69
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.09 E-value=9.4e-05 Score=77.28 Aligned_cols=308 Identities=12% Similarity=0.114 Sum_probs=162.9
Q ss_pred HHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeec-cCccchhhHHH
Q 013020 35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKVGFGVPA 113 (451)
Q Consensus 35 ~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~-~g~~~~F~i~~ 113 (451)
.+.+.-.+-+++.|..-|++..+.+.=.+. ++|..+.++.|-+..+|.+++.-+++++-++ .||...|.+-+
T Consensus 130 ~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~-------~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g 202 (466)
T KOG2532|consen 130 LLLVLRFLQGLGQGVLFPAIGSILAKWAPP-------NERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFG 202 (466)
T ss_pred hhHHHHHHhHHHHhHHHhhhhceeeeECCH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHH
Confidence 445666777888888888888888866553 4689999999999999999998889999888 99999999877
Q ss_pred HHHHHHHHHHHhcCccEeecCCCCCch-hH-HHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhh-hhhhh
Q 013020 114 VIMLLSALSFFLASPFYVKSKANTSLL-PG-LTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFL-NKACM 190 (451)
Q Consensus 114 i~~~i~li~f~~g~~~~~~~~p~~~~l-~~-~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~a~~ 190 (451)
+.-++-.++++.. |.+ .|+..|. +. -.+.+ .+++......+ . ..+++...+.-. -.|..
T Consensus 203 ~~g~i~~~~w~~~---~~d-~P~~h~~is~~El~~I---~~~k~~~~~~~----------~-~~vP~~~i~ts~~vwai~ 264 (466)
T KOG2532|consen 203 IVGLIWFILWFLF---YSD-SPSKHPNISEKELKYI---EKGKSEAHVKK----------K-PPVPYKAILTSPPVWAIW 264 (466)
T ss_pred HHHHHHHHHHHHH---hcC-CcccCCCCCHHHHHHH---HhcccccccCC----------C-CCCCHHHHHcCHHHHHHH
Confidence 6555555544431 222 3333331 11 11111 11111000000 0 000110000000 00000
Q ss_pred hcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccC-chhhhhHHHHHHHHHHHHHHHHhhhhhhc
Q 013020 191 AKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPS-GSFNIFAILTLTIWIGLYDRAVLPLASKI 269 (451)
Q Consensus 191 ~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~-~~l~~~n~l~iii~~pl~~~~~~pl~~r~ 269 (451)
+.. ....|..+.. ....- ..|+.-+ ++++.. .++.++..+...+...+...+-..+.+|
T Consensus 265 ~~~----------f~~~~~~~~l--~~y~P-----tY~~~VL--~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~- 324 (466)
T KOG2532|consen 265 ISA----------FGGNWGFYLL--LTYLP-----TYLKEVL--GFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR- 324 (466)
T ss_pred HHH----------HHHHHHHHHH--HHHhh-----HHHHHHh--CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 000 0011111100 00000 1122111 344433 3444555555444444444444443333
Q ss_pred cCCCCCCCcchhhh--HhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHH
Q 013020 270 KGKPCQLSLKLRMG--IGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTE 347 (451)
Q Consensus 270 ~~~~~~~s~~~ki~--iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~e 347 (451)
... .+..+|+. ++....+++++++++.. + -+. |. ..++++++..+..-...-
T Consensus 325 ~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~--------~------------~~~-~~--a~~~l~~~~~~~g~~~~G 378 (466)
T KOG2532|consen 325 ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTS--------D------------EHR-LL--AVILLTIAIGLSGFNISG 378 (466)
T ss_pred cCc---hHhHHHHHHhHHHHHHHHHHHeeeecC--------C------------Ccc-hH--HHHHHHHHHHHcccchhh
Confidence 222 35556664 45555555555554442 0 011 12 234555555555444444
Q ss_pred Hhhc--c-cCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 013020 348 FYYT--E-LPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYL 424 (451)
Q Consensus 348 f~~~--~-aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~ 424 (451)
+.-. . || +.-++.||+.....+++..+++.+++.+-. . ++-++| .+.|++.+++.++..++|.
T Consensus 379 f~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~--~t~~eW----------~~VF~i~a~i~~~~~i~f~ 444 (466)
T KOG2532|consen 379 FYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVT-D--NTREEW----------RIVFLIAAGILIVGNIIFL 444 (466)
T ss_pred hHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeC-C--CCHHHH----------HHHHHHHHHHHHHhchhee
Confidence 4433 3 54 566799999999999999999998877642 1 011244 5788899999999998887
Q ss_pred HHh
Q 013020 425 ACC 427 (451)
Q Consensus 425 ~~~ 427 (451)
+.+
T Consensus 445 ~f~ 447 (466)
T KOG2532|consen 445 FFG 447 (466)
T ss_pred Eee
Confidence 776
No 70
>PRK09669 putative symporter YagG; Provisional
Probab=98.08 E-value=0.00095 Score=69.28 Aligned_cols=62 Identities=3% Similarity=0.008 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhcccC-------chhhhHHHHHHhHHHHHHHHHHHHHhhhhcc
Q 013020 324 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVDD 385 (451)
Q Consensus 324 ~~wli~~y~l~~igEl~~~p~g~ef~~~~aP-------~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~ 385 (451)
.++++...++.++++....+...+++.+.++ ++..|...|++.+...+|..+++.+.+.+-+
T Consensus 319 ~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 319 VWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556688999999999999999998876 5567889999988888888777777665543
No 71
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.04 E-value=0.0012 Score=72.90 Aligned_cols=85 Identities=21% Similarity=0.189 Sum_probs=64.3
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeee----------
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD---------- 101 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~---------- 101 (451)
+.+.++++..+.++|.|+.-|...+++++.++. ++|...+++...+..+|.++++.++.++..
T Consensus 254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~-------~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~ 326 (742)
T TIGR01299 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ-------EKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGS 326 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccc
Confidence 456788888999999999999999999998864 457778888888888998888765433322
Q ss_pred ---ccCccchhhHHHHHHHHHHHHH
Q 013020 102 ---NLGWKVGFGVPAVIMLLSALSF 123 (451)
Q Consensus 102 ---~~g~~~~F~i~~i~~~i~li~f 123 (451)
..+|++.|.+.++..++.++.+
T Consensus 327 ~~~~~gWR~l~~i~~lp~ll~ll~~ 351 (742)
T TIGR01299 327 AYQFHSWRVFVIVCAFPCVFAIGAL 351 (742)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHH
Confidence 2468888888777666665543
No 72
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.02 E-value=0.00011 Score=73.41 Aligned_cols=86 Identities=14% Similarity=0.164 Sum_probs=70.0
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHh-hhhheeeeccCccchhh
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAV-TCIVYIQDNLGWKVGFG 110 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~-~~~~~i~~~~g~~~~F~ 110 (451)
+.+.++++..+.++|.|..-|...++..+.+++ ++|...++++..+.++|..+++ ++...+.+..+|++.|.
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSR-------SERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI 154 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCH-------hhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence 567778888889999999999999999999875 3567788899999999999999 56677777889999999
Q ss_pred HHHHHHHHHHHHHH
Q 013020 111 VPAVIMLLSALSFF 124 (451)
Q Consensus 111 i~~i~~~i~li~f~ 124 (451)
+.++..++..++.+
T Consensus 155 ~~~~~~~~~~~~~~ 168 (379)
T TIGR00881 155 VPGIIAIIVSLICF 168 (379)
T ss_pred HHHHHHHHHHHHHh
Confidence 88776665544443
No 73
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.01 E-value=0.0014 Score=66.54 Aligned_cols=91 Identities=21% Similarity=0.323 Sum_probs=77.5
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh
Q 013020 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG 110 (451)
Q Consensus 31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~ 110 (451)
.+...+.++-.+.++..|.|-+-..+..++..++ +||.++-.+.+.+..+.-.+|.-+..++.+.+||+..|.
T Consensus 99 p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp-------~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~ 171 (394)
T COG2814 99 PSFAVLLLARALAGLAHGVFWSIAAALAARLVPP-------GKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL 171 (394)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------cchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence 4677888999999999999999999999999876 368889999999999999999888999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCc
Q 013020 111 VPAVIMLLSALSFFLASP 128 (451)
Q Consensus 111 i~~i~~~i~li~f~~g~~ 128 (451)
+-++.-++.++..+..-+
T Consensus 172 ~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 172 AIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 877766666665554444
No 74
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.00 E-value=0.001 Score=66.62 Aligned_cols=81 Identities=22% Similarity=0.286 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheee--------eccCcc
Q 013020 35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGWK 106 (451)
Q Consensus 35 ~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~--------~~~g~~ 106 (451)
.++++..+.++|.|..-+...++.+|.+++ ++|.....++..+.++|.++++.+...+. +.++|+
T Consensus 98 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~ 170 (394)
T TIGR00883 98 LLLLARLIQGFSLGGEWGGAALYLAEYAPP-------GKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR 170 (394)
T ss_pred HHHHHHHHHHhhccccccccHHHhhhcCCc-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence 467777888899999999999999988764 35677888999999999999987655443 357899
Q ss_pred chhhHHHHHHHHHHHH
Q 013020 107 VGFGVPAVIMLLSALS 122 (451)
Q Consensus 107 ~~F~i~~i~~~i~li~ 122 (451)
+.|.+.++..+++..+
T Consensus 171 ~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 171 IPFLVSAVLVLIGLYL 186 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999877766665443
No 75
>PRK10429 melibiose:sodium symporter; Provisional
Probab=97.99 E-value=0.0016 Score=68.34 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccC-------chhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP-------~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
+.++++...++.++++....+...+++.+.+| ++..|.+.|.+.+..-+|..+++.+.+.+-
T Consensus 323 ~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l 391 (473)
T PRK10429 323 NALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL 391 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566688999999999999999999877 566788999999988888877777666543
No 76
>PRK09952 shikimate transporter; Provisional
Probab=97.93 E-value=0.0021 Score=66.74 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheee--------eccCcc
Q 013020 35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGWK 106 (451)
Q Consensus 35 ~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~--------~~~g~~ 106 (451)
.+.+.-.+.++|.|+.-|....+..+.+++ ++|....+....+.++|.+++..+..++. +++||+
T Consensus 127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~-------~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr 199 (438)
T PRK09952 127 LLVTLRAIQGFAVGGEWGGAALLAVESAPK-------NKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWR 199 (438)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHhCCC-------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChH
Confidence 466667788999999999999999887764 24555667778888889888866555443 357999
Q ss_pred chhhHHHHHHHH
Q 013020 107 VGFGVPAVIMLL 118 (451)
Q Consensus 107 ~~F~i~~i~~~i 118 (451)
+.|.+.++..++
T Consensus 200 ~~f~~~~~~~l~ 211 (438)
T PRK09952 200 IPFLFSIVLVLI 211 (438)
T ss_pred HHHHHHHHHHHH
Confidence 999988765444
No 77
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.93 E-value=0.0028 Score=66.78 Aligned_cols=76 Identities=17% Similarity=0.196 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhe----ee----eccCcc
Q 013020 35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY----IQ----DNLGWK 106 (451)
Q Consensus 35 ~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~----i~----~~~g~~ 106 (451)
.+.+.-.+.++|.|+.-|...+++++.++++ +|.....+...+.++|..++..+... +. .++||+
T Consensus 120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~-------~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR 192 (490)
T PRK10642 120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDR-------KRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWR 192 (490)
T ss_pred HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHH
Confidence 4677778889999999999999999988752 34556677777788888777654433 22 368999
Q ss_pred chhhHHHHHHH
Q 013020 107 VGFGVPAVIML 117 (451)
Q Consensus 107 ~~F~i~~i~~~ 117 (451)
+.|.+.++..+
T Consensus 193 ~~f~i~~~~~l 203 (490)
T PRK10642 193 IPFFIALPLGI 203 (490)
T ss_pred HHHHHHHHHHH
Confidence 99998665433
No 78
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.92 E-value=0.011 Score=60.47 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHH-HHHhhhhheeeeccCccchhhH
Q 013020 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS-IVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa-~i~~~~~~~i~~~~g~~~~F~i 111 (451)
...+++...+.++|.+..-+...+...+.+++ ++|.++..++..+.++|. .+++.+.+++.+..||...+..
T Consensus 105 ~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 105 YPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ-------DNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred HHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 44555566666777776666666666666553 468889999999999996 6788888888888886544443
Q ss_pred H
Q 013020 112 P 112 (451)
Q Consensus 112 ~ 112 (451)
.
T Consensus 178 ~ 178 (402)
T TIGR00897 178 A 178 (402)
T ss_pred H
Confidence 3
No 79
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.91 E-value=0.00074 Score=68.20 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=68.0
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccC--ccchh
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG--WKVGF 109 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g--~~~~F 109 (451)
+...++++..+.++|.|...+...++..|.+++ ++|....+++..+.++|..+++.+.+.+.+..+ |++.|
T Consensus 99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f 171 (405)
T TIGR00891 99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPK-------HLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALF 171 (405)
T ss_pred cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCCh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHH
Confidence 456678888899999999999999999998864 357888999999999999999988888877666 99999
Q ss_pred hHHHHHHHHHHH
Q 013020 110 GVPAVIMLLSAL 121 (451)
Q Consensus 110 ~i~~i~~~i~li 121 (451)
.+.++..++.++
T Consensus 172 ~~~~~~~~~~~~ 183 (405)
T TIGR00891 172 FISILPIIFALW 183 (405)
T ss_pred HHHHHHHHHHHH
Confidence 887665555443
No 80
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=97.88 E-value=1e-05 Score=82.33 Aligned_cols=147 Identities=13% Similarity=0.159 Sum_probs=105.9
Q ss_pred ccccCchhhhhHHHH---HHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 013020 236 FEIPSGSFNIFAILT---LTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGI 312 (451)
Q Consensus 236 ~~ip~~~l~~~n~l~---iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~ 312 (451)
+++.++....+.+.+ -+++.|++..+- .| ....+-|++|..+=+++.+..++.
T Consensus 63 fni~~s~~Gll~~vf~v~~~i~sPl~gyLa----dr-------yNR~~v~~vG~~iW~~Av~~~~fs------------- 118 (493)
T KOG1330|consen 63 FNISDSELGLLQTVFIVVFMIASPLFGYLA----DR-------YNRKRVIAVGIFIWTLAVFASGFS------------- 118 (493)
T ss_pred cCCCchhccchhHHHHHHHHHHHHHHHHHH----hh-------cCcceEEeeHHHHHHHHHHHHHHH-------------
Confidence 456565544444444 456788888763 33 233445788988888887755444
Q ss_pred CCCccccccchHHHHH-HHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCC
Q 013020 313 SDDLRAVVQMSAMWQL-PYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGG 391 (451)
Q Consensus 313 ~~~~~~~~~~s~~wli-~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~ 391 (451)
+-+||+ ..-.+.|+||.-.+|....++.+..|+..||.++|+++++.-+|+.+|....+.+...+.
T Consensus 119 ----------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~--- 185 (493)
T KOG1330|consen 119 ----------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF--- 185 (493)
T ss_pred ----------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc---
Confidence 346665 577899999999999999999999999999999999999999999998877766654431
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 013020 392 NGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG 431 (451)
Q Consensus 392 ~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~ 431 (451)
.| .+-|+.-++++++.+++.+++.+-=+
T Consensus 186 --~W----------r~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 186 --WW----------RWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred --ce----------EEEEEeehHHHHHHHHHHHhhccCcc
Confidence 24 23466788888888777666555433
No 81
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.88 E-value=0.0016 Score=67.47 Aligned_cols=83 Identities=10% Similarity=0.031 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhe-eeeccCccchhhH
Q 013020 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY-IQDNLGWKVGFGV 111 (451)
Q Consensus 33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~-i~~~~g~~~~F~i 111 (451)
...+++...+.+++.|..-+.......|.+++ ++|..++++++.+.++|..+++.+.+. +..+.+|+.+|.+
T Consensus 118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~-------~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~ 190 (438)
T TIGR00712 118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQ-------SERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF 190 (438)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCc-------ccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 44566777788888888888888888887764 357889999999999999998876654 5556799999999
Q ss_pred HHHHHHHHHHH
Q 013020 112 PAVIMLLSALS 122 (451)
Q Consensus 112 ~~i~~~i~li~ 122 (451)
.++..++..+.
T Consensus 191 ~~~~~~i~~~~ 201 (438)
T TIGR00712 191 PAICAIIVALF 201 (438)
T ss_pred HHHHHHHHHHH
Confidence 87776665443
No 82
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=97.86 E-value=0.0044 Score=64.09 Aligned_cols=79 Identities=25% Similarity=0.423 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheee--------eccCc
Q 013020 34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGW 105 (451)
Q Consensus 34 ~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~--------~~~g~ 105 (451)
..+.+.-.+.++|.|+.-|...++++|.+++ ++|..+.++.+.+.+.|.++++.+...+. ..+||
T Consensus 125 ~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~-------~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW 197 (432)
T PRK10406 125 ALLLLARLFQGLSVGGEYGTSATYMSEVAVE-------GRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGW 197 (432)
T ss_pred HHHHHHHHHHHhhhhhhHhhHHHHHHHhCCC-------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccch
Confidence 4577777889999999999999999998875 24566788889999999998886654443 26899
Q ss_pred cchhhHHHHHHHHH
Q 013020 106 KVGFGVPAVIMLLS 119 (451)
Q Consensus 106 ~~~F~i~~i~~~i~ 119 (451)
++.|.+.++..++.
T Consensus 198 r~~F~i~~~~~ll~ 211 (432)
T PRK10406 198 RIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999877655544
No 83
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.86 E-value=0.00056 Score=71.51 Aligned_cols=82 Identities=10% Similarity=0.022 Sum_probs=63.1
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeecc---Cccc
Q 013020 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL---GWKV 107 (451)
Q Consensus 31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~---g~~~ 107 (451)
.+...+++...+.++|.|..-|...+.+++.++++ +|.....++-.+.++|..+++.+..++.+.. +|+.
T Consensus 120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-------~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~ 192 (467)
T PRK09556 120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR-------KRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIG 192 (467)
T ss_pred chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc-------ceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchh
Confidence 35667777778888999998899999999998753 4667788888999999999988776665542 5888
Q ss_pred hhhHHHHHHHHH
Q 013020 108 GFGVPAVIMLLS 119 (451)
Q Consensus 108 ~F~i~~i~~~i~ 119 (451)
.|.++++..++.
T Consensus 193 ~f~~~g~~~~~~ 204 (467)
T PRK09556 193 MFIFPSIIALII 204 (467)
T ss_pred HHHHHHHHHHHH
Confidence 888866655443
No 84
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=97.86 E-value=0.0034 Score=63.93 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHH-HhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCC
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL-SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN 401 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~-~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln 401 (451)
+.+|++...++.+++.........++..++.|++.+++..+. +.....+|+.+++.+.+..-+.. +
T Consensus 306 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~------G------- 372 (396)
T TIGR00882 306 TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI------G------- 372 (396)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc------c-------
Confidence 566677777888988877777778888888899998886655 45667778777776665554211 1
Q ss_pred CcchhHHHHHHHHHHHHHHHH
Q 013020 402 KGHYDYYYWLLTALSMANFLY 422 (451)
Q Consensus 402 ~~~~~~~f~~la~l~lv~~~~ 422 (451)
+...|.+.+++.++..++
T Consensus 373 ---~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 373 ---FQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred ---cHHHHHHHHHHHHHHHHH
Confidence 345566666666555543
No 85
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.84 E-value=0.0051 Score=62.49 Aligned_cols=52 Identities=13% Similarity=0.011 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHHHHHHHHHHHHHh
Q 013020 74 LQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 125 (451)
Q Consensus 74 ~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~i~~~i~li~f~~ 125 (451)
+..+-..+.++..+|.+++....+++.+++||+..|.+.++..++..+..+.
T Consensus 131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667779999999988889999999999999988887766655433
No 86
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.83 E-value=0.014 Score=59.16 Aligned_cols=270 Identities=16% Similarity=0.153 Sum_probs=153.6
Q ss_pred CCccchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCc--
Q 013020 28 ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGW-- 105 (451)
Q Consensus 28 ~~~~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~-- 105 (451)
+.+.......++..++++|.+.-...-.++.+|.-+| ++|.+.-++-|...-+|-.++.++.+.+-+.++-
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e-------~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~r 156 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPE-------ERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPER 156 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCH-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence 3444455566666677777777778888888887765 4678888898998889999998888877766653
Q ss_pred --cchhhHHHHHHHHHHHHHHhcCccEeecC---CCC-CchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCC
Q 013020 106 --KVGFGVPAVIMLLSALSFFLASPFYVKSK---ANT-SLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPS 179 (451)
Q Consensus 106 --~~~F~i~~i~~~i~li~f~~g~~~~~~~~---p~~-~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (451)
...-.++.+.+.+.++-.+-.-+++.+.. ++. .++....+.+. .+ |+.+
T Consensus 157 L~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~~---~~-----~~a~----------------- 211 (403)
T PF03209_consen 157 LIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQVW---AS-----PQAR----------------- 211 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHHH---hC-----CChh-----------------
Confidence 22233344444444443333223333222 111 12222211110 00 1000
Q ss_pred CchhhhhhhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHHH---HHHHHH
Q 013020 180 ENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILT---LTIWIG 256 (451)
Q Consensus 180 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l~---iii~~p 256 (451)
..+-++.....- ++.|+ --+..+-+.-+.+|++.-..+|.++ .++-..
T Consensus 212 ~f~~fl~l~t~a-------------------~~~QD----------~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~ 262 (403)
T PF03209_consen 212 RFFVFLFLGTLA-------------------FFMQD----------VILEPYGGEVFGMSVGETTRLTAFWGGGTLLGML 262 (403)
T ss_pred HHHHHHHHHHHH-------------------HHhhH----------HHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 000011000000 00010 1112111112345666555555554 333333
Q ss_pred HHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHH
Q 013020 257 LYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGL 336 (451)
Q Consensus 257 l~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~i 336 (451)
+-.++.. +| ..+.+--.+|....++++....+... .-+.+-+.+.-+++|+
T Consensus 263 ~~g~~l~---~~-------~~~~~~a~~G~~~~~~~f~lii~a~~-------------------~~~~~~~~~~~~l~G~ 313 (403)
T PF03209_consen 263 LAGFLLS---RR-------LGKKRTAALGCLLGALAFALIILAGP-------------------LGSPWLFRPGVFLLGL 313 (403)
T ss_pred HHHHHhc---CC-------CCchHHHHHHHHHHHHHHHHHHHHHh-------------------cccchHHHHHHHHHHH
Confidence 3333322 22 12222334677777777765444421 1235557788899999
Q ss_pred HHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhcccc
Q 013020 337 AMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDIT 387 (451)
Q Consensus 337 gEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s 387 (451)
|--+..+..++..-+.++++..|+.||+|....+++.-++..+.+...|..
T Consensus 314 g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~ 364 (403)
T PF03209_consen 314 GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV 364 (403)
T ss_pred hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988888888887776654
No 87
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.81 E-value=0.00047 Score=68.79 Aligned_cols=137 Identities=10% Similarity=0.009 Sum_probs=94.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020 241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 320 (451)
Q Consensus 241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~ 320 (451)
.++.+...+..++..|+...+. +|.++| +-+.++.++.+++.+..++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~g~l~----d~~g~r-------~~~~~~~~~~~~~~~~~~~~--------------------- 79 (399)
T TIGR00893 32 GYVFSAFSWGYVVGQFPGGWLL----DRFGAR-------KTLAVFIVIWGVFTGLQAFA--------------------- 79 (399)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH----HhcCcc-------eeeHHHHHHHHHHHHHHHHH---------------------
Confidence 3556666777677777666654 332221 11345666656555544433
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCC
Q 013020 321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI 400 (451)
Q Consensus 321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~l 400 (451)
.+.++++...++.|++.....+....++.+..|++.|+..+|++.....+|..+++.+...+.+.. +|
T Consensus 80 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~----- 147 (399)
T TIGR00893 80 -GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF------SW----- 147 (399)
T ss_pred -cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC------Cc-----
Confidence 256667788899999999999999999999999999999999999999999999988876543211 33
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHH
Q 013020 401 NKGHYDYYYWLLTALSMANFLYYLAC 426 (451)
Q Consensus 401 n~~~~~~~f~~la~l~lv~~~~~~~~ 426 (451)
.+.|+..++++++..++.+..
T Consensus 148 -----~~~~~~~~~~~~~~~~~~~~~ 168 (399)
T TIGR00893 148 -----QWAFIIEGVLGIIWGVLWLKF 168 (399)
T ss_pred -----hHHHHHHHHHHHHHHHHhhhe
Confidence 345666666666655554433
No 88
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.77 E-value=0.00032 Score=69.33 Aligned_cols=132 Identities=15% Similarity=0.144 Sum_probs=93.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 321 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~ 321 (451)
++.+...+...+..|+...+..+.-+| +-+.+|.++.+++.++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~---------------------- 82 (352)
T PF07690_consen 36 LLFSAFFLGSALFSPFAGYLSDRFGRR-----------RVLIIGLLLFALGSLLLAFA---------------------- 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-HH-----------HHHHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCe-----------eeEeehhhhhhhHHHHhhhh----------------------
Confidence 455556666667777766654332222 23567777777774444422
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCC
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN 401 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln 401 (451)
.+.++++...++.|+++.+..+....++.+..|++.|+..+|++.....+|..+++.+.....+.- +|
T Consensus 83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------~~------ 150 (352)
T PF07690_consen 83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF------GW------ 150 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC------HH------
T ss_pred hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc------cc------
Confidence 223467788899999999999999999999999999999999999999999999998887764210 22
Q ss_pred CcchhHHHHHHHHHHHHHHHH
Q 013020 402 KGHYDYYYWLLTALSMANFLY 422 (451)
Q Consensus 402 ~~~~~~~f~~la~l~lv~~~~ 422 (451)
...|++.+++.++..++
T Consensus 151 ----~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 151 ----RWAFLISAILSLIAAIL 167 (352)
T ss_dssp ----CCHHHHHHHHHHHHHHH
T ss_pred ----ccccccccchhhhhhhh
Confidence 23466777777777664
No 89
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=97.70 E-value=0.0018 Score=64.82 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=62.0
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeecc--Cccchh
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL--GWKVGF 109 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~--g~~~~F 109 (451)
+...++++..+.++|.|...+...+...|.++ ++|....+++..+.++|..+++.+.+++.++. +|+..|
T Consensus 86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f 157 (355)
T TIGR00896 86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFP--------QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQAL 157 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc--------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 34566777788889998888888888877664 24677889999999999999998888877664 388888
Q ss_pred hHHHHHHHHHHH
Q 013020 110 GVPAVIMLLSAL 121 (451)
Q Consensus 110 ~i~~i~~~i~li 121 (451)
.+.++..++.+.
T Consensus 158 ~~~~~~~~~~~~ 169 (355)
T TIGR00896 158 AWWALPALLALL 169 (355)
T ss_pred HHHHHHHHHHHH
Confidence 876665554443
No 90
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.67 E-value=0.00079 Score=66.76 Aligned_cols=116 Identities=14% Similarity=0.015 Sum_probs=82.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020 241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 320 (451)
Q Consensus 241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~ 320 (451)
+++.+...+..++..|+...+. .|.++| +-+.++.++.+++.+...+.... .
T Consensus 37 g~~~~~~~~~~~i~~~~~G~l~----dr~g~r-------~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 88 (365)
T TIGR00900 37 SLAALAGMLPYVVLSPIAGALA----DRYDRK-------KVMIGADLIRAVLVAVLPFVALL-----------------G 88 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhHHH----Hhhchh-------HHHHHHHHHHHHHHHHHHHHHHc-----------------C
Confidence 3455566666666777766654 332211 12445566555555555444310 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
..+.++++...++.+++..+..|....++.+..|++.|+..+|.......+|..+++.+.....
T Consensus 89 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 152 (365)
T TIGR00900 89 GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY 152 (365)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 1467777888899999999999999999999999999999999999999999999888876654
No 91
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.65 E-value=0.00082 Score=68.01 Aligned_cols=88 Identities=13% Similarity=0.193 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhh--heeeeccCccchhh
Q 013020 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI--VYIQDNLGWKVGFG 110 (451)
Q Consensus 33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~--~~i~~~~g~~~~F~ 110 (451)
.+.+.+-+.+-+.=.|-=-|.....++.=|.. ++|.+..+++-.+-|+|+.+.+.++ +++..+++|+.+|.
T Consensus 117 ~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr-------~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~ 189 (448)
T COG2271 117 LFLFAVLWVLNGWFQGMGWPPCARTITHWFSR-------KERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFY 189 (448)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc-------cccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHH
Confidence 33444444444444444456666667777764 3578888899999999999999988 89999999999999
Q ss_pred HHHH-HHHHHHHHHHhcC
Q 013020 111 VPAV-IMLLSALSFFLAS 127 (451)
Q Consensus 111 i~~i-~~~i~li~f~~g~ 127 (451)
+|++ .++++++.+..+|
T Consensus 190 ~pgiiaiival~~~~~~r 207 (448)
T COG2271 190 FPGIIAIIVALILLFLLR 207 (448)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 9977 5566666666555
No 92
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.65 E-value=0.00032 Score=69.90 Aligned_cols=137 Identities=8% Similarity=0.062 Sum_probs=90.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 321 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~ 321 (451)
++.+...+..++..|+..++. +|.++| +-+.+|.++.+++.+..++.
T Consensus 34 ~~~~~~~~~~~~~~~~~g~l~----dr~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------- 80 (379)
T TIGR00881 34 LLLSSFSIAYGISKFVMGSVS----DRSNPR-------VFLPIGLILCAIVNLFFGFS---------------------- 80 (379)
T ss_pred HHHHHHHHHHHhhhhhhhHHH----HhhCCe-------ehhHHHHHHHHHHHHHHHHh----------------------
Confidence 344555555555666555543 332211 23556777777666655443
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHH-HHhhhhccccccCCCCCCCCCCC
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVAS-LIMNAVDDITKRGGNGGWIPSNI 400 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~-~l~~~~~~~s~~~~~~~w~~~~l 400 (451)
.+.++++...++.+++..+..|.....+.+..|++.|+..+|++.....+|..+++ .+....... .+|
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~----- 149 (379)
T TIGR00881 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL------YSW----- 149 (379)
T ss_pred hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc------CCc-----
Confidence 24556677789999999999999999999999999999999999998999999888 344333211 133
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHh
Q 013020 401 NKGHYDYYYWLLTALSMANFLYYLACC 427 (451)
Q Consensus 401 n~~~~~~~f~~la~l~lv~~~~~~~~~ 427 (451)
...|+..++++++..++.+...
T Consensus 150 -----~~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T TIGR00881 150 -----HWVFIVPGIIAIIVSLICFLLL 171 (379)
T ss_pred -----hhHHHHHHHHHHHHHHHHheee
Confidence 2345666666666555544443
No 93
>PRK15075 citrate-proton symporter; Provisional
Probab=97.58 E-value=0.008 Score=62.16 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhee--------eeccCcc
Q 013020 35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI--------QDNLGWK 106 (451)
Q Consensus 35 ~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i--------~~~~g~~ 106 (451)
.+.++..+.++|.|..-|+...+.+|.+++ ++|.....++..+.|+|..+++.+.+.+ .+++||+
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~-------~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr 191 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATP-------GRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWR 191 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCc-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchH
Confidence 456777888899999999999999998864 3467777777777777776666554443 3578999
Q ss_pred chhhHHHH
Q 013020 107 VGFGVPAV 114 (451)
Q Consensus 107 ~~F~i~~i 114 (451)
+.|.+..+
T Consensus 192 ~~f~~~~~ 199 (434)
T PRK15075 192 IPFLIGCL 199 (434)
T ss_pred HHHHHHHH
Confidence 99997544
No 94
>PRK03545 putative arabinose transporter; Provisional
Probab=97.57 E-value=0.0021 Score=65.26 Aligned_cols=104 Identities=13% Similarity=0.061 Sum_probs=77.3
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhH
Q 013020 281 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSI 360 (451)
Q Consensus 281 ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~ 360 (451)
-+.+++++.+++.+..++. .|+++++...+++|+++....|....++.+..|++.|+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~ 133 (390)
T PRK03545 76 LLIGLFVLFIASHVLSALA----------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQ 133 (390)
T ss_pred HHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhh
Confidence 3556777767666555433 346667777889999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 013020 361 ASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLY 422 (451)
Q Consensus 361 ~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~ 422 (451)
++|++....++|..+++.+.....+.- +| ...|++.++++++..+.
T Consensus 134 ~~g~~~~~~~~g~~ig~~l~~~l~~~~------gw----------~~~f~~~~~~~~l~~~~ 179 (390)
T PRK03545 134 ALSLLATGTALAMVLGLPLGRVIGQYL------GW----------RTTFLAIGGGALITLLL 179 (390)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHh------cH----------HHHHHHHHHHHHHHHHH
Confidence 999999999999999888876654211 33 34566666666555443
No 95
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.57 E-value=0.0027 Score=65.27 Aligned_cols=80 Identities=13% Similarity=0.036 Sum_probs=66.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHH
Q 013020 282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 361 (451)
Q Consensus 282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~ 361 (451)
+.+++++.+++.+..++. .|+++++...++.|++|....|....++.+..|++.|+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~----------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~ 133 (412)
T TIGR02332 76 IAGIMVLWGIASTATMFA----------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARA 133 (412)
T ss_pred HHHHHHHHHHHHHHHHHh----------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHH
Confidence 456777777666655443 3456677888999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHhhhh
Q 013020 362 STLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 362 ~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
+|++....++|..+++.+....
T Consensus 134 ~~~~~~~~~~g~~~~~~~~~~l 155 (412)
T TIGR02332 134 NALFMIAMPVTMALGLILSGYI 155 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988887655
No 96
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.56 E-value=0.0023 Score=66.22 Aligned_cols=109 Identities=10% Similarity=0.052 Sum_probs=75.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccc
Q 013020 243 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM 322 (451)
Q Consensus 243 l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~ 322 (451)
+.+...+...+..|+..++. .|.+.+ +=+.+++++.+++.+..++. -
T Consensus 63 ~~~~~~~~~~~~~~~~G~l~----dr~g~r-------~~~~~~~~~~~~~~~~~~~~----------------------~ 109 (434)
T PRK11663 63 LATLFYITYGVSKFVSGIVS----DRSNAR-------YFMGIGLIATGIINILFGFS----------------------S 109 (434)
T ss_pred HHHHHHHHHHHHHhhhhHHH----hhcCCc-------hhHHHHHHHHHHHHHHHHHH----------------------h
Confidence 33444445555555555543 443211 12466777766666544433 2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
+.+.++...++.++++.+..+.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus 110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 171 (434)
T PRK11663 110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA 171 (434)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556778899999999999999999999999999999999999999999888776654
No 97
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.52 E-value=0.018 Score=59.23 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=67.7
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeee------ccCc
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD------NLGW 105 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~------~~g~ 105 (451)
+...++++-.+.++|.|..-|...+..++.+++ ++|.....++..+.++|..+++.+.+++.+ ..||
T Consensus 95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gw 167 (412)
T TIGR02332 95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPA-------YFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGW 167 (412)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccch
Confidence 356788888899999999988888888888874 467888899999999999999988887653 4799
Q ss_pred cchhhHHHHHHHHHHHH
Q 013020 106 KVGFGVPAVIMLLSALS 122 (451)
Q Consensus 106 ~~~F~i~~i~~~i~li~ 122 (451)
++.|.+.++..++..++
T Consensus 168 r~~f~~~~~~~l~~~~~ 184 (412)
T TIGR02332 168 QWLFLLEGFPSVILGVM 184 (412)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999977665554443
No 98
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.51 E-value=0.0037 Score=52.45 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
+.++.....++.+++.-...+.....+.+..|++.|+..+|++.....+|..+++.+.....
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 34556667789999999999999999999999999999999999999999999988776654
No 99
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.49 E-value=0.0017 Score=67.70 Aligned_cols=112 Identities=11% Similarity=-0.032 Sum_probs=82.6
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccc
Q 013020 240 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV 319 (451)
Q Consensus 240 ~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~ 319 (451)
.+|..+...+..++..|+..++..+.-|| +-+.+|.++.+++.+..+..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~-------------------- 87 (485)
T TIGR00711 39 VQWVITSYMLANAISIPLTGWLAKRFGTR-----------RLFLISTFAFTLGSLLCGVA-------------------- 87 (485)
T ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHhCc--------------------
Confidence 34666777777777777777664332221 22456666666655544321
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 320 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 320 ~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
.+.++++...+++|++.....|....++.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus 88 --~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 150 (485)
T TIGR00711 88 --PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII 150 (485)
T ss_pred --CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence 356667788899999999999999999999999999999999999999999999888776553
No 100
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.49 E-value=0.0028 Score=63.65 Aligned_cols=135 Identities=12% Similarity=0.026 Sum_probs=89.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 321 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~ 321 (451)
++.+.+.+..++..|+..++. +|.++ .+-+.+|.++.+++.+..+..
T Consensus 44 ~~~~~~~~~~~~~~~~~g~l~----d~~g~-------r~~~~~~~~~~~~~~~~~~~~---------------------- 90 (385)
T TIGR00710 44 MTLTLYLLGFAAGQLLWGPLS----DRYGR-------RPVLLLGLFIFALSSLGLALS---------------------- 90 (385)
T ss_pred HHHHHHHHHHHHHHHhhhhHH----HhcCC-------hHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 344555555555566555543 33221 123456666666666654432
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCC
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN 401 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln 401 (451)
.+.++++...++.++++....+....++.+..|++.|+..+|++.....+|..+++.+.....+.. +|
T Consensus 91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------~~------ 158 (385)
T TIGR00710 91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL------SW------ 158 (385)
T ss_pred ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CH------
Confidence 245567777899999999999999999999999999999999999999999888888776654211 23
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHH
Q 013020 402 KGHYDYYYWLLTALSMANFLYYLA 425 (451)
Q Consensus 402 ~~~~~~~f~~la~l~lv~~~~~~~ 425 (451)
...|+..+++.++..++.+.
T Consensus 159 ----~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 159 ----HAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred ----HHHHHHHHHHHHHHHHHHHH
Confidence 33455566666555554443
No 101
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.45 E-value=0.0049 Score=65.02 Aligned_cols=112 Identities=12% Similarity=-0.069 Sum_probs=83.0
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccc
Q 013020 240 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV 319 (451)
Q Consensus 240 ~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~ 319 (451)
.+|..+...+...++.|+..++..+.-|| +-+.+|.++.+++.++.++.
T Consensus 43 ~~~~~~~~~l~~~~~~~~~G~l~D~~Grk-----------~~l~~~~~~~~~~~~~~~~a-------------------- 91 (495)
T PRK14995 43 LLWIIDIYSLVMAGMVLPMGALGDRIGFK-----------RLLMLGGTLFGLASLAAAFS-------------------- 91 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHc--------------------
Confidence 34666666777777777776664332222 23566777777776665433
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcc-cCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 320 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTE-LPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 320 ~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~-aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
-|+++++...+++|+|.....|.....+.+. .|++.|+..+|++.....+|..+++.+...+.
T Consensus 92 --~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~ 155 (495)
T PRK14995 92 --PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL 155 (495)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566678888999999999999888877665 58899999999999999999999998887764
No 102
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.45 E-value=0.024 Score=59.85 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeee-----------
Q 013020 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD----------- 101 (451)
Q Consensus 33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~----------- 101 (451)
...++++..+.++|.|+.-+....+.++.+++ ++|....++++...++|.++++.+..++..
T Consensus 115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~-------~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~ 187 (502)
T TIGR00887 115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATK-------KWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD 187 (502)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 46788999999999999999999999998875 467888899999999999888866543311
Q ss_pred ------------ccCccchhhHHHHHHHHHHHH
Q 013020 102 ------------NLGWKVGFGVPAVIMLLSALS 122 (451)
Q Consensus 102 ------------~~g~~~~F~i~~i~~~i~li~ 122 (451)
..+|++.|.+.++..++..+.
T Consensus 188 ~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~ 220 (502)
T TIGR00887 188 EASCTGSCVPAVDYMWRILIGFGAVPALLALYF 220 (502)
T ss_pred cccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence 247999998877766554443
No 103
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.41 E-value=0.0046 Score=62.71 Aligned_cols=111 Identities=11% Similarity=0.003 Sum_probs=81.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020 241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 320 (451)
Q Consensus 241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~ 320 (451)
++..+.+.+..++..|+..++. +|.++ .+-+.+|.++.+++.+..++.
T Consensus 41 g~~~s~~~~~~~~~~~~~g~l~----dr~g~-------r~~~~~~~~~~~~~~~l~~~~--------------------- 88 (382)
T PRK10091 41 GHMISYYALGVVVGAPIIALFS----SRYSL-------KHILLFLVALCVIGNAMFTLS--------------------- 88 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----ccCcc-------HHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 3456667777777777776653 43221 123556777777666655433
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
.+.++++...++.|+++....+.....+.+..|++.|+..+|++.....+|..++..+...+.
T Consensus 89 -~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 151 (382)
T PRK10091 89 -SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS 151 (382)
T ss_pred -CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence 346777778899999999999999889999999999999999998888888888877765543
No 104
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.37 E-value=0.0069 Score=61.91 Aligned_cols=108 Identities=11% Similarity=-0.041 Sum_probs=80.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccch
Q 013020 244 NIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMS 323 (451)
Q Consensus 244 ~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s 323 (451)
.+...+...+..|+...+. .|. ...+-+.+++++.+++.+..++. .+
T Consensus 61 ~~~~~~~~~~~~~~~g~l~----Dr~-------grr~~~~~~~~~~~~~~~~~~~~----------------------~~ 107 (394)
T PRK10213 61 VTVTAFVAMFASLFITQTI----QAT-------DRRYVVILFAVLLTLSCLLVSFA----------------------NS 107 (394)
T ss_pred HHHHHHHHHHHHHHHHHHh----ccc-------CcHHHHHHHHHHHHHHHHHHHHH----------------------Ch
Confidence 3455666666666666543 332 22233567777777666554322 35
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 324 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 324 ~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
.++++...++.+++.....|.....+.+..|++.|+..+|++....++|..+++.+.....
T Consensus 108 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~ 168 (394)
T PRK10213 108 FSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG 168 (394)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777899999999999999999999999999999999999989999999888887664
No 105
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.35 E-value=0.0054 Score=62.46 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
+.++++...++.+++.....|.....+.+..|++.|+..+|++.....+|..+++.+....
T Consensus 102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (406)
T PRK11551 102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA 162 (406)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777889999999999999999999999999999999999998899999888776554
No 106
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.34 E-value=0.0062 Score=61.80 Aligned_cols=85 Identities=11% Similarity=0.118 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCC
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINK 402 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~ 402 (451)
+.++++...++++++..+..+.....+.+..|++.|+..+|++.....+|..+++.+.....+.. +|
T Consensus 90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~------g~------- 156 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF------PW------- 156 (392)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------Ch-------
Confidence 45566777889999999999999999999999999999999999888888888887766553211 33
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 013020 403 GHYDYYYWLLTALSMANFLYY 423 (451)
Q Consensus 403 ~~~~~~f~~la~l~lv~~~~~ 423 (451)
...|++.++++++..++.
T Consensus 157 ---~~~~~~~~~~~~i~~~~~ 174 (392)
T PRK10473 157 ---QSLFYTMAAMGILVLLLS 174 (392)
T ss_pred ---HHHHHHHHHHHHHHHHHH
Confidence 344566666666555543
No 107
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=97.34 E-value=0.036 Score=54.78 Aligned_cols=87 Identities=10% Similarity=-0.057 Sum_probs=67.2
Q ss_pred ccchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeec-------
Q 013020 30 WSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN------- 102 (451)
Q Consensus 30 ~~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~------- 102 (451)
..+.+.+.+++.+++.|.+...+..++++++.-+++ ++.+..|+.-.+..+|++++|++.+.+-.+
T Consensus 7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~-------~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~ 79 (310)
T TIGR01272 7 QRYYVLFLGALFVLASGLTILQVAANPYVSILGPIE-------TAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSM 79 (310)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcc-------hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhh
Confidence 356889999999999999999999999999987543 456678888888999999999988765421
Q ss_pred ---------cCccchhhHHHHHHHHHHHHH
Q 013020 103 ---------LGWKVGFGVPAVIMLLSALSF 123 (451)
Q Consensus 103 ---------~g~~~~F~i~~i~~~i~li~f 123 (451)
..|++.|.+-++..++..+++
T Consensus 80 ~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 80 QVATANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899995544444433443
No 108
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.25 E-value=0.007 Score=60.15 Aligned_cols=135 Identities=11% Similarity=0.055 Sum_probs=85.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 321 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~ 321 (451)
+..+...+...+..|+...+. +|.++| +-+.+|.++.+++.+..++.
T Consensus 42 ~~~s~~~~~~~~~~~~~G~l~----d~~G~r-------~~~~~~~~~~~~~~~~~~~~---------------------- 88 (377)
T TIGR00890 42 IWFTLLLIGLAMSMPVGGLLA----DKFGPR-------AVAMLGGILYGLGFTFYAIA---------------------- 88 (377)
T ss_pred HHHHHHHHHHHHHhhhhHHHH----HHcCcc-------chhHHhHHHHHHHHHHHHHH----------------------
Confidence 344555556666666666654 333222 12456777777776655444
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCC
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN 401 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln 401 (451)
.+.+.++...++.++++....+.....+.+..|+ .|+.+++++....++|..+++.+...+... .+|
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~------ 155 (377)
T TIGR00890 89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITSVINL------EGV------ 155 (377)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHHHHHhc------ccH------
Confidence 2344556667799999998888888888777775 599999999998889988766555443211 123
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHH
Q 013020 402 KGHYDYYYWLLTALSMANFLYYLAC 426 (451)
Q Consensus 402 ~~~~~~~f~~la~l~lv~~~~~~~~ 426 (451)
...|+..++++++..+..+..
T Consensus 156 ----~~~f~~~~~~~~~~~~~~~~~ 176 (377)
T TIGR00890 156 ----PAAFIYMGIIFLLVIVLGAFL 176 (377)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHh
Confidence 345666676666665554443
No 109
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.24 E-value=0.011 Score=59.36 Aligned_cols=132 Identities=19% Similarity=0.132 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccch
Q 013020 244 NIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMS 323 (451)
Q Consensus 244 ~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s 323 (451)
.++..+...+..|+...+ .+|.+ ..+-+.+|.++.+++.+...+. .+
T Consensus 32 ~~~~~~~~~~~~~~~g~l----~d~~g-------~~~~~~~~~~~~~i~~~~~~~~----------------------~~ 78 (377)
T PRK11102 32 LSAYILGFAIGQLFYGPM----ADSFG-------RKPVILGGTLVFALAAVACALA----------------------QT 78 (377)
T ss_pred HHHHHHHHHHHHHhhchH----HhhcC-------ChHHHHHHHHHHHHHHHHHHHH----------------------cc
Confidence 344455455555555443 23322 1223566777777776655433 12
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCc
Q 013020 324 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKG 403 (451)
Q Consensus 324 ~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~ 403 (451)
.+.++...++.+++.....+....++.+..|++.|+..+|++.....+|..+++.+.....+.. +|
T Consensus 79 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~-------- 144 (377)
T PRK11102 79 IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF------SW-------- 144 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------Ch--------
Confidence 3445667889999999999999999999999999999999999988999999888776554211 23
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 013020 404 HYDYYYWLLTALSMANFLYYL 424 (451)
Q Consensus 404 ~~~~~f~~la~l~lv~~~~~~ 424 (451)
...|+..++++++..++..
T Consensus 145 --~~~~~~~~~~~~~~~~~~~ 163 (377)
T PRK11102 145 --HAIFWVLALAAILAAALVF 163 (377)
T ss_pred --HHHHHHHHHHHHHHHHHHH
Confidence 3445666666665554443
No 110
>PRK11462 putative transporter; Provisional
Probab=97.21 E-value=0.045 Score=57.30 Aligned_cols=80 Identities=18% Similarity=0.282 Sum_probs=49.7
Q ss_pred HHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeec-------cCccchh
Q 013020 37 YFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-------LGWKVGF 109 (451)
Q Consensus 37 ~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~-------~g~~~~F 109 (451)
++...+..++.-.+.-.-.++.++.-++ + ++|.+..++.-++.++|.++++.+...+.+. .||....
T Consensus 113 ~~~~~~~~~~~t~~~ipy~al~~~lt~d--~----~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~ 186 (460)
T PRK11462 113 AITYTLLTLLYTVVNIPYCALGGVITND--P----TQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGI 186 (460)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhcCC--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH
Confidence 3333445566666777777888877654 3 4688999999999999988876654332222 3465555
Q ss_pred hHHHHHHHHHHHH
Q 013020 110 GVPAVIMLLSALS 122 (451)
Q Consensus 110 ~i~~i~~~i~li~ 122 (451)
.+-++..++...+
T Consensus 187 ~i~~ii~~i~~~i 199 (460)
T PRK11462 187 AVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHHHHHHH
Confidence 5544444444433
No 111
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.21 E-value=0.0025 Score=66.48 Aligned_cols=62 Identities=15% Similarity=0.042 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
+.++++..-+++|++|....|.....+.+..|++.|+.++|++.....+|..+++.+.....
T Consensus 130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~ 191 (465)
T TIGR00894 130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC 191 (465)
T ss_pred CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888899999999999999999999999999999999999999999999998877654
No 112
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.17 E-value=0.0028 Score=65.92 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=83.6
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhh
Q 013020 279 KLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMS 358 (451)
Q Consensus 279 ~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~k 358 (451)
..-|.+|+.+.++=|+...+. -|+|..+|.-+++++--.+++.+..+++...+|++++
T Consensus 436 v~v~~lgLa~~~~Rf~~~S~L----------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~ 493 (618)
T KOG3762|consen 436 VNVMYLGLACNVGRFLYYSYL----------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLR 493 (618)
T ss_pred cceeeehhhHHHHHHHHHHHh----------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcch
Confidence 344567777777666655544 3456667888999999999999999999999999999
Q ss_pred hHHHHHHhHHH-HHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCcccCC
Q 013020 359 SIASTLSGAGL-SAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGR 436 (451)
Q Consensus 359 g~~~g~~~l~~-aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~~~ 436 (451)
..++|+.-... ++|.-+|+++.+.+... + -.-.+|+..++.+++..+++..+-+.++++...
T Consensus 494 at~Q~l~~g~f~GlG~g~GslIGG~~v~~---------f-------g~~ttf~~~giAcl~~l~~~~~iq~~l~~~~~i 556 (618)
T KOG3762|consen 494 ATAQGLLQGIFHGLGKGLGSLIGGFVVER---------F-------GARTTFRIFGIACLVTLALFISIQLLLKRRGFI 556 (618)
T ss_pred HHHHHHHHHHhcccCcchhhhhhhhhhee---------e-------hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Confidence 99999876332 44444444444443211 0 024567888888888888777776666665533
No 113
>TIGR00895 2A0115 benzoate transport.
Probab=97.16 E-value=0.0043 Score=62.30 Aligned_cols=62 Identities=18% Similarity=0.116 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
+.++++...++.+++.....+....++.+..|++.|+..+|+......+|..+++.+.....
T Consensus 104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 165 (398)
T TIGR00895 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI 165 (398)
T ss_pred chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 45566777899999999999999999999999999999999999999999999888776553
No 114
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.16 E-value=0.0081 Score=60.59 Aligned_cols=111 Identities=15% Similarity=0.111 Sum_probs=80.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020 241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 320 (451)
Q Consensus 241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~ 320 (451)
.++.++..+...+..|+...+.. |.++| +-+.++.++.+++.+..++.
T Consensus 50 g~~~~~~~~~~~~~~~~~G~l~D----r~g~r-------~~~~~~~~~~~~~~~~~~~~--------------------- 97 (405)
T TIGR00891 50 ASLISAALISRWFGALMFGLWGD----RYGRR-------LPMVTSIVLFSAGTLACGFA--------------------- 97 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HhccH-------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 34556666666677777666543 32211 12445666555555444322
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
.+.++++...++.|+++....+....++.+..|++.|+..+|++....++|..+++.+.....
T Consensus 98 -~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~ 160 (405)
T TIGR00891 98 -PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV 160 (405)
T ss_pred -ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245566777899999999999999999999999999999999999999999999988776654
No 115
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.15 E-value=0.0096 Score=61.01 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=79.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 321 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~ 321 (451)
+..+...+..++..|+..++. +|.++| +-+.+|.++.+++.+..++.
T Consensus 57 ~~~~~~~~~~~l~~~~~g~l~----dr~g~r-------~~l~~~~~~~~~~~~~~~~~---------------------- 103 (426)
T PRK12307 57 FLATAAFIGRPFGGALFGLLA----DKFGRK-------PLMMWSIVAYSVGTGLSGLA---------------------- 103 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHhCCh-------HHHHHHHHHHHHHHHHHHHH----------------------
Confidence 345555555566666655543 443221 22456777777766655443
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
.+.++++...++.|+++....+....++.+..|++.|+..+|++....++|..+++.+.....
T Consensus 104 ~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~ 166 (426)
T PRK12307 104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA 166 (426)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence 235567777899999999999999999999999999999999999999999999887765543
No 116
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.0019 Score=64.87 Aligned_cols=117 Identities=14% Similarity=0.040 Sum_probs=96.5
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchh-hh
Q 013020 281 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM-SS 359 (451)
Q Consensus 281 ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~-kg 359 (451)
-|.+|++++..+-++.++.+ |+..++..-.++|+|..+.+..|+++..+.-|+.. ||
T Consensus 138 pm~~Gl~vmf~sTilFafg~----------------------sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~ 195 (464)
T KOG3764|consen 138 PMVAGLFVMFLSTILFAFGN----------------------SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERG 195 (464)
T ss_pred HHHHHHHHHHHHHHHHHHcc----------------------hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhh
Confidence 47899999999998888774 23357788999999999999999999999999888 59
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCcccC
Q 013020 360 IASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKG 435 (451)
Q Consensus 360 ~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~~ 435 (451)
..||+-+-..++|..+|+.+.+...+.-. ..-=|.+++.++++.+++-+++.+.++..++
T Consensus 196 ~vmGialgfislG~lvgPpfGGilYe~~G----------------k~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~ 255 (464)
T KOG3764|consen 196 SVMGIALGFISLGVLVGPPFGGILYEFAG----------------KSAPFLVLAIVLLLDGALQLLVIEPTEMDPD 255 (464)
T ss_pred HHHHHHHHHHhccceecCCcccchHhhcC----------------CcCcHHHHHHHHHHHHHHHHheeCccccCcc
Confidence 99999999999999999988887764321 1123789999999999988888877765553
No 117
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.13 E-value=0.015 Score=59.74 Aligned_cols=86 Identities=10% Similarity=0.103 Sum_probs=63.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCC
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN 401 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln 401 (451)
.|+++++..-+++|+++.+..+.......+..|++.++..+|++.....+|..+++.+.....+.. +|
T Consensus 102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~------gw------ 169 (413)
T PRK15403 102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV------HW------ 169 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CH------
Confidence 356677778899999999878877777778889999999999999988889888887776554211 34
Q ss_pred CcchhHHHHHHHHHHHHHHHHH
Q 013020 402 KGHYDYYYWLLTALSMANFLYY 423 (451)
Q Consensus 402 ~~~~~~~f~~la~l~lv~~~~~ 423 (451)
...|+..++++++..+..
T Consensus 170 ----~~~f~~~~~~~~i~~~~~ 187 (413)
T PRK15403 170 ----KVLFAIIAVMGLIAFVGL 187 (413)
T ss_pred ----HHHHHHHHHHHHHHHHHH
Confidence 345666676666655443
No 118
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=97.08 E-value=0.017 Score=58.72 Aligned_cols=138 Identities=17% Similarity=0.120 Sum_probs=106.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhH-hHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccc
Q 013020 241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGI-GLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV 319 (451)
Q Consensus 241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~i-G~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~ 319 (451)
.++-+...+.+.+..|++..+..++-|| |.-+ .+.+.++|=++.++.
T Consensus 51 G~lis~yAl~~ai~ap~l~~lt~r~~Rr------------~lLl~~l~lFi~~n~l~alA-------------------- 98 (394)
T COG2814 51 GQLITAYALGVALGAPLLALLTGRLERR------------RLLLGLLALFIVSNLLSALA-------------------- 98 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchH------------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence 3778899999999999998875443222 2333 334444444444433
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCC
Q 013020 320 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSN 399 (451)
Q Consensus 320 ~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ 399 (451)
-|.+.++..-++.+++--...+++...+.+.+|++.|+..+|+-+...+++..+|..+..++.+.- +|
T Consensus 99 --p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~------GW---- 166 (394)
T COG2814 99 --PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF------GW---- 166 (394)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh------hH----
Confidence 567778888999999999999999999999999999999999999999999999888888876543 56
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 013020 400 INKGHYDYYYWLLTALSMANFLYYLACCK 428 (451)
Q Consensus 400 ln~~~~~~~f~~la~l~lv~~~~~~~~~~ 428 (451)
-.-|+.+++++++..+..+...+
T Consensus 167 ------R~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 167 ------RATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 24577888888888777777666
No 119
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.08 E-value=0.0036 Score=68.27 Aligned_cols=132 Identities=9% Similarity=-0.045 Sum_probs=86.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhh-------------
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAI------------- 308 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~------------- 308 (451)
++.+.+-+.-.+.+++..++ ..|. ...+-+++|+++.+++.++.++.+........
T Consensus 72 ~i~s~~~i~~~~~~i~v~~~----~~r~-------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~ 140 (633)
T TIGR00805 72 LINGSYEIGNLLLIIFVSYF----GTKL-------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSA 140 (633)
T ss_pred eeeehhhHHHHHHHHHHHHh----hccc-------CcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccc
Confidence 34455555555666665554 2332 23445889999999998888776421100000
Q ss_pred hcCCC--C------------Cccccc--cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHH
Q 013020 309 NEGIS--D------------DLRAVV--QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAA 372 (451)
Q Consensus 309 ~~g~~--~------------~~~~~~--~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG 372 (451)
+..+- + .+.... ...+..++..-+++|+|+....+.+..++.+..|++.++.++|++.....+|
T Consensus 141 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG 220 (633)
T TIGR00805 141 NSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFG 220 (633)
T ss_pred ccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhh
Confidence 00000 0 000000 1234455567799999999999999999999999999999999999999988
Q ss_pred HHHHHHHhhhhc
Q 013020 373 NLVASLIMNAVD 384 (451)
Q Consensus 373 ~~l~~~l~~~~~ 384 (451)
..+|..+.+.+.
T Consensus 221 ~~lG~llgg~l~ 232 (633)
T TIGR00805 221 PAFGYLLGSFCL 232 (633)
T ss_pred hHHHHHHHHHHH
Confidence 888877776654
No 120
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.07 E-value=0.045 Score=56.89 Aligned_cols=85 Identities=18% Similarity=0.057 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHH
Q 013020 34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 113 (451)
Q Consensus 34 ~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~ 113 (451)
....+.+.+..+|.....-..-++..+.-.+++. .+...-++.|.+.++|++++..+.+++.++.+++..|.+++
T Consensus 87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~-----~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~ 161 (433)
T PF03092_consen 87 AIAVVLLFLASFGYAFADVAADALVVELARREPE-----SRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISA 161 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc-----hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHH
Confidence 3445556667777777777777777766554433 35566678899999999999989999999999999999988
Q ss_pred HHHHHHHHHH
Q 013020 114 VIMLLSALSF 123 (451)
Q Consensus 114 i~~~i~li~f 123 (451)
+.-.+.++..
T Consensus 162 ~~~~l~~~~~ 171 (433)
T PF03092_consen 162 ALPLLMLIVA 171 (433)
T ss_pred HHHHHHHHHH
Confidence 7766665443
No 121
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.06 E-value=0.027 Score=57.17 Aligned_cols=89 Identities=15% Similarity=0.203 Sum_probs=67.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCC
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN 401 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln 401 (451)
.|..+++..-++.|+||.. .+.....+.+..|++.|+.++|++.....+|..++..+...+.+. .+|
T Consensus 77 ~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~------~gW------ 143 (368)
T TIGR00903 77 FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA------GGL------ 143 (368)
T ss_pred ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cch------
Confidence 3678888889999999986 456666678889999999999999999999999998888776532 156
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHh
Q 013020 402 KGHYDYYYWLLTALSMANFLYYLACC 427 (451)
Q Consensus 402 ~~~~~~~f~~la~l~lv~~~~~~~~~ 427 (451)
...|...++++++..++.+...
T Consensus 144 ----r~~f~~~~~l~~~~~~~~~~~l 165 (368)
T TIGR00903 144 ----QLLIIPIAAVAAAGIILVLAAL 165 (368)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHc
Confidence 2456666777766655544433
No 122
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.06 E-value=0.016 Score=59.20 Aligned_cols=108 Identities=10% Similarity=0.062 Sum_probs=78.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 321 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~ 321 (451)
++.+.+.+...+..|+..++..+.-+| +=+.+|+++.+++.+..++.
T Consensus 48 ~~~s~~~~~~~l~~~~~g~l~dr~G~r-----------~~l~~~~~l~~~~~~~~~~a---------------------- 94 (393)
T PRK09705 48 LLTALPVVTMGGLALAGSWLHQHVSER-----------RSVAISLLLIAVGALMRELY---------------------- 94 (393)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHC----------------------
Confidence 444555556666666666654332222 23678888888888877654
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
.++++++..-++.|+++....+...+.+.+..| +.|+.++|++......|..+++.+....
T Consensus 95 ~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l 155 (393)
T PRK09705 95 PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWL 155 (393)
T ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234456667899999999999999999988887 6689999999988888888888776654
No 123
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.05 E-value=0.02 Score=58.59 Aligned_cols=81 Identities=17% Similarity=0.093 Sum_probs=65.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHH
Q 013020 282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 361 (451)
Q Consensus 282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~ 361 (451)
+.+|.++.+++++..... -++++++...++.++++.+..|.....+.+.+|++.++..
T Consensus 79 l~~~~~~~~~~~~~~~~~----------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a 136 (400)
T PRK11646 79 IVTGMLMRAAGFATMAIA----------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRF 136 (400)
T ss_pred HHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 456777777776655432 2467777888999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhc
Q 013020 362 STLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 362 ~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
+|+......+|..+++.+.....
T Consensus 137 ~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 137 FSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999989999988888877664
No 124
>PRK10054 putative transporter; Provisional
Probab=97.02 E-value=0.024 Score=57.98 Aligned_cols=110 Identities=11% Similarity=0.035 Sum_probs=74.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 321 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~ 321 (451)
+..++..+.-++..|+..++. .|.++| +-+.+|.++.+++++..++..
T Consensus 47 ~~~s~~~~~~~~~~~~~G~l~----Dr~g~k-------~~~~~~~~~~~~~~~~~~~~~--------------------- 94 (395)
T PRK10054 47 YAMTIALTIGVVFSLGFGILA----DKFDKK-------RYMLLAITAFASGFIAIPLVN--------------------- 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hhcCcc-------hhHHHHHHHHHHHHHHHHHHh---------------------
Confidence 344455555566667666654 332211 124567777767666554432
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
+.+..+..+.+.+.+.....|.....+.+..|++.|+..+|+......+|..+++.+.....
T Consensus 95 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 95 -NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333445567777877778888899999999999999999999888899998888877754
No 125
>PRK10133 L-fucose transporter; Provisional
Probab=97.02 E-value=0.2 Score=51.96 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=46.2
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhe
Q 013020 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY 98 (451)
Q Consensus 31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~ 98 (451)
.+...+.++..+.++|.|...+..+++++|..++ +++....+.+.....+|..+++.+.+.
T Consensus 115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~-------~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-------SSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh-------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999875332 233445677777778888888876554
No 126
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.01 E-value=0.015 Score=59.75 Aligned_cols=110 Identities=14% Similarity=0.015 Sum_probs=79.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020 241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 320 (451)
Q Consensus 241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~ 320 (451)
.++.+...+...+..|+...+..+.-|| +-+.+|.++.+++.+...+.. .
T Consensus 74 ~~~~~~~~~~~~i~~~~~g~l~d~~grr-----------~~~~~~~~~~~~~~~~~~~~~-------------------~ 123 (481)
T TIGR00879 74 GLVVSIFLVGGFIGALFAGWLSDRFGRK-----------KSLLIIALLFVIGAILMGLAA-------------------F 123 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhhhH-----------HHHHHHHHHHHHHHHHHHHhc-------------------c
Confidence 3455555666666667666654322221 224566666666665554331 1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHh
Q 013020 321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIM 380 (451)
Q Consensus 321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~ 380 (451)
..+.++++...++.|+++....+....++.+..|++.|+..+|++.....+|..++..+.
T Consensus 124 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 234456777889999999999999999999999999999999999999999999998877
No 127
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.021 Score=60.47 Aligned_cols=98 Identities=15% Similarity=0.056 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcc
Q 013020 325 MWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGH 404 (451)
Q Consensus 325 ~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~ 404 (451)
+-++..-+++|+..-...........+..+...-+-..|+..+..+++..+++.+.+.+.+.+ ++
T Consensus 389 ~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t---------------g~ 453 (509)
T KOG2504|consen 389 VGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT---------------GN 453 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc---------------CC
Confidence 445566677777777777777777777777777788999999999999999998887665443 12
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCcccCCC
Q 013020 405 YDYYYWLLTALSMANFLYYLACCKAYGPFKGRV 437 (451)
Q Consensus 405 ~~~~f~~la~l~lv~~~~~~~~~~~y~~~~~~~ 437 (451)
++..|...+...+++++++++....++++++..
T Consensus 454 Y~~~f~~~g~~~~~s~~~~~~~~~~~~~~~~~~ 486 (509)
T KOG2504|consen 454 YDHAFYFCGLCFLLSAVLLLILRECLKRREKSA 486 (509)
T ss_pred eeeehhhcChHHHHHHHHHHHhHHHHHhccccc
Confidence 556667778877877777666653455544443
No 128
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=96.98 E-value=0.037 Score=55.19 Aligned_cols=107 Identities=15% Similarity=0.065 Sum_probs=70.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 321 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~ 321 (451)
++.+...+..++..|+..++. .|.++| +-+.+|.++.+++.+..++..
T Consensus 41 ~~~~~~~~~~~~~~~~~g~l~----dr~g~r-------~~~~~~~~~~~i~~~~~~~~~--------------------- 88 (366)
T TIGR00886 41 NLVAVPVLAGAVLRIILGFLV----DKFGPR-------YTTTLSLLLLAIPCLWAGLAV--------------------- 88 (366)
T ss_pred HhhHHHHHHHHHHHHHHHHHH----HHhCch-------HHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 445555556666666666554 332211 235667777777776655442
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhh
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMN 381 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~ 381 (451)
.+.++++...++++++.... +.....+.+..|++.|+..++++.....+|..+++.+..
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 147 (366)
T TIGR00886 89 QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMP 147 (366)
T ss_pred hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 14566777788899987755 457788999999999999999988655566655555443
No 129
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=96.96 E-value=0.013 Score=60.57 Aligned_cols=114 Identities=13% Similarity=0.099 Sum_probs=76.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHH
Q 013020 282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 361 (451)
Q Consensus 282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~ 361 (451)
+.+|.++.+++.+..+.... ...+.+.++...++.++++....+...+.+.+..|++.|+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~ 155 (438)
T TIGR00712 94 LPAGLILSAAVMLLMGFVPW------------------ATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTI 155 (438)
T ss_pred hHHHHHHHHHHHHHHhcccc------------------ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhH
Confidence 45677777776665443310 013344456677889999999889888999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 013020 362 STLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCK 428 (451)
Q Consensus 362 ~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~ 428 (451)
+|++....++|..+++.+....-... .+| ...|+..++++++..++.++..+
T Consensus 156 ~~~~~~~~~~g~~~~~~l~~~~~~~~-----~~w----------~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 156 VSIWNCAHNIGGGIPPLLVLLGMAWF-----NDW----------HAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHh-----hhh----------HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999988899888877654322110 134 23566667666665554444433
No 130
>PRK03699 putative transporter; Provisional
Probab=96.95 E-value=0.03 Score=56.96 Aligned_cols=61 Identities=11% Similarity=0.012 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
+.++++...++.++++....+.....+.+..|++.|+..++......++|..+++.+...+
T Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 154 (394)
T PRK03699 94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL 154 (394)
T ss_pred hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555677789999999999999999999999999999999988888888888887776543
No 131
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=96.94 E-value=0.017 Score=60.15 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=58.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHH
Q 013020 282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 361 (451)
Q Consensus 282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~ 361 (451)
+.+|.++.+++.+..++... ..-++++++...++.++++....|.....+.+..|++.|+..
T Consensus 96 l~~~~~~~~i~~~~~~~~~~------------------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~ 157 (452)
T PRK11273 96 LPAGLILAAAVMLFMGFVPW------------------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGI 157 (452)
T ss_pred HHHHHHHHHHHHHHHHhhhc------------------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHH
Confidence 55677777777766655421 012455667778899999999888777888889999999999
Q ss_pred HHHHhHHHHHHHHHHHH
Q 013020 362 STLSGAGLSAANLVASL 378 (451)
Q Consensus 362 ~g~~~l~~aiG~~l~~~ 378 (451)
+|++.....+|..+.+.
T Consensus 158 ~~~~~~~~~~g~~~~~~ 174 (452)
T PRK11273 158 VSVWNCAHNVGGGLPPL 174 (452)
T ss_pred HHHHHHHHHhhhhHHHH
Confidence 99998888888754443
No 132
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=96.91 E-value=0.0014 Score=66.63 Aligned_cols=95 Identities=13% Similarity=0.035 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHH
Q 013020 34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 113 (451)
Q Consensus 34 ~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~ 113 (451)
..++++..+.++|.|..-|.......+.+++ +++.+.+.+++...++|..+++.+.+++.+..||+..|.+.+
T Consensus 303 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 375 (399)
T PRK05122 303 WMALIGAALTGFGFSLVFPALGVEAVKRVPP-------QNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAA 375 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 4456667778888887777777666665432 467889999999999999999888999999999999999998
Q ss_pred HHHHHHHHHHHhcCccEeecCC
Q 013020 114 VIMLLSALSFFLASPFYVKSKA 135 (451)
Q Consensus 114 i~~~i~li~f~~g~~~~~~~~p 135 (451)
+..+++++..+..+++.+|+.|
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T PRK05122 376 LAALLGLALTWLLYRRAPRAVP 397 (399)
T ss_pred HHHHHHHHHHHHhcccccccCC
Confidence 8888887776655555555444
No 133
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=96.91 E-value=0.016 Score=56.81 Aligned_cols=110 Identities=16% Similarity=0.043 Sum_probs=81.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 321 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~ 321 (451)
+..+...+..++..|+..++. +|.++| +-+.+|.++.+++.+.....
T Consensus 38 ~~~~~~~~~~~~~~~~~g~~~----d~~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------- 84 (352)
T cd06174 38 LIVSAFSLGYALGSLLAGYLS----DRFGRR-------RVLLLGLLLFALGSLLLAFA---------------------- 84 (352)
T ss_pred HHHHHHHHHHHHHHHhHHHHH----HHhCCc-------hhhHHHHHHHHHHHHHHHHh----------------------
Confidence 445555566666666666654 332221 13566777777666655433
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
.+.++++...++.+++..+..+....+..+..|++.|+..+|.......+|..+++.+...+.
T Consensus 85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 147 (352)
T cd06174 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA 147 (352)
T ss_pred ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 235567778899999999999999999999999999999999999999999999988887664
No 134
>PRK10504 putative transporter; Provisional
Probab=96.91 E-value=0.031 Score=58.18 Aligned_cols=62 Identities=15% Similarity=-0.018 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
+.++++...+++|++.....|.....+.+..|++.++..+|+......+|..+++.+...+.
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~ 158 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV 158 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 45556777899999999999999999999999999999999998888888888887776654
No 135
>TIGR00898 2A0119 cation transport protein.
Probab=96.88 E-value=0.015 Score=61.14 Aligned_cols=131 Identities=14% Similarity=0.105 Sum_probs=89.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020 241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 320 (451)
Q Consensus 241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~ 320 (451)
++.+++..+..++..++...+. .|.++| +=+.++.++.+++.+..++.
T Consensus 130 ~~~~s~~~~g~~~g~~~~g~l~----Dr~Grr-------~~~~~~~~~~~i~~~~~~~~--------------------- 177 (505)
T TIGR00898 130 DLTQSCFFVGVLLGSFVFGYLS----DRFGRK-------KVLLLSTLVTAVSGVLTAFS--------------------- 177 (505)
T ss_pred HHHHHHHHHHHHHHHHhHHHhh----hhccch-------HHHHHHHHHHHHHHHHHHHc---------------------
Confidence 3455666666666767666553 333222 11344555555554443322
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCC
Q 013020 321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI 400 (451)
Q Consensus 321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~l 400 (451)
.+.++++...++.|++.....+....++.+..|++.|+.+++++....++|..+++.+...+. +|
T Consensus 178 -~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---------~w----- 242 (505)
T TIGR00898 178 -PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---------DW----- 242 (505)
T ss_pred -ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------HH-----
Confidence 356677888899999999999999999999999999999999998888999988887765543 24
Q ss_pred CCcchhHHHHHHHHHHHHHHHHH
Q 013020 401 NKGHYDYYYWLLTALSMANFLYY 423 (451)
Q Consensus 401 n~~~~~~~f~~la~l~lv~~~~~ 423 (451)
...|+..++.+++..+.+
T Consensus 243 -----r~~~~~~~i~~~~~~~~~ 260 (505)
T TIGR00898 243 -----RWLQLAVSLPTFLFFLLS 260 (505)
T ss_pred -----HHHHHHHHHHHHHHHHHH
Confidence 345566666666555544
No 136
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=96.86 E-value=0.035 Score=56.30 Aligned_cols=135 Identities=17% Similarity=0.136 Sum_probs=85.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 321 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~ 321 (451)
++.++..+...+..|+..++.. |.++| +-+.++.++.+++.+.....
T Consensus 58 ~~~~~~~~~~~~~~~~~g~l~d----r~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------- 104 (408)
T PRK09874 58 LVFSITFLFSAIASPFWGGLAD----RKGRK-------IMLLRSALGMGIVMVLMGLA---------------------- 104 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh----hhCcH-------HHHHHHHHHHHHHHHHHHHH----------------------
Confidence 3445566666667777666543 32211 12345555555555443322
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCC
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN 401 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln 401 (451)
.+.++++...++.+++..+ .+.....+.+..|++.|+..+|+......+|..+++.+...+.+.. +|
T Consensus 105 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~------ 171 (408)
T PRK09874 105 QNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY------GL------ 171 (408)
T ss_pred hhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CH------
Confidence 3456677778888888765 4667788888999999999999998888888888888776653211 23
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHH
Q 013020 402 KGHYDYYYWLLTALSMANFLYYLAC 426 (451)
Q Consensus 402 ~~~~~~~f~~la~l~lv~~~~~~~~ 426 (451)
...|++.+++.++..++.++.
T Consensus 172 ----~~~~~~~~~~~~~~~~~~~~~ 192 (408)
T PRK09874 172 ----RPVFFITASVLFLCFLVTLFC 192 (408)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666555544443
No 137
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=96.86 E-value=0.021 Score=58.68 Aligned_cols=93 Identities=16% Similarity=0.237 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhH-HHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcch
Q 013020 327 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGA-GLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHY 405 (451)
Q Consensus 327 li~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l-~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~ 405 (451)
++...+++|+.-.+..+++..++.+.+|+++|+.+||++.. ..++|..+|+.+.+...+.-..+ + . -+.
T Consensus 304 ~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~---~-~------~~~ 373 (400)
T PF03825_consen 304 QLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR---G-M------FDW 373 (400)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch---h-h------hhH
Confidence 34444689999999999999999999999999999999774 45777777777665544210000 0 0 013
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 013020 406 DYYYWLLTALSMANFLYYLACCKA 429 (451)
Q Consensus 406 ~~~f~~la~l~lv~~~~~~~~~~~ 429 (451)
..++.+.+++.++..++|++..|.
T Consensus 374 ~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 374 SAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Confidence 345666777777777777766443
No 138
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=96.78 E-value=0.016 Score=60.87 Aligned_cols=112 Identities=10% Similarity=0.042 Sum_probs=79.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCch---hh
Q 013020 282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS---MS 358 (451)
Q Consensus 282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~---~k 358 (451)
+.+|+++.+++++..++. .+.++++...+++++|+-+..|....++.++.|++ .|
T Consensus 82 l~~~~~~~~~g~~~~~~~----------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r 139 (475)
T TIGR00924 82 MVLGGIVLMLGHFMLAMS----------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRR 139 (475)
T ss_pred HHHHHHHHHHHHHHHHhc----------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccc
Confidence 567777777777655432 12344555677899999999999999999888765 48
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 013020 359 SIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG 431 (451)
Q Consensus 359 g~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~ 431 (451)
+...++++....+|..+|+.+...+.+.. +| ..-|...++.++++.++++...+.++
T Consensus 140 ~~~~~~~~~~~niG~~ig~~l~g~l~~~~------g~----------~~~f~~~~~~~~~~~l~~~~~~~~~~ 196 (475)
T TIGR00924 140 DGGFTLFYMSINIGSFISPLLAGVIAENY------GY----------HVGFNLAAVGMVIGLLTFFAGRHMLR 196 (475)
T ss_pred cceehhHHHHHHHHHHHHHHHHHHHHHhc------Ch----------HHHHHHHHHHHHHHHHHHHHcccccc
Confidence 88899999999999999998887764311 23 34555566666666666666666554
No 139
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=96.75 E-value=0.052 Score=60.15 Aligned_cols=61 Identities=11% Similarity=-0.001 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
+.++++...++.|++.....|....++...+|++.||..++++....++|..+++.+...+
T Consensus 254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i 314 (742)
T TIGR01299 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI 314 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777889999999999999999999999999999999999888889888887765443
No 140
>TIGR00901 2A0125 AmpG-related permease.
Probab=96.71 E-value=0.08 Score=52.81 Aligned_cols=63 Identities=14% Similarity=0.036 Sum_probs=53.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
.+.+++...+++.++.-.+..|...+++.+.+|++.|+...|+......+|..+++.+.....
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 143 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLA 143 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666677788888889999999999999999999999999998888999998888876554
No 141
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=96.71 E-value=0.0033 Score=52.72 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=71.0
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+...+++...+.+++.|..-+...+...|.+++ ++|.+..++.+...++|..+++.+.+++.+..+|+..|.+
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 122 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPP-------EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLF 122 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh-------hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHH
Confidence 355667777888888898889999999988875 3567888999999999999999999999888999999998
Q ss_pred HHHHHHHHHHHHH
Q 013020 112 PAVIMLLSALSFF 124 (451)
Q Consensus 112 ~~i~~~i~li~f~ 124 (451)
.++..+++.+...
T Consensus 123 ~~~~~~~~~~~~~ 135 (141)
T TIGR00880 123 LAILALAAFILLA 135 (141)
T ss_pred HHHHHHHHHHHHh
Confidence 8777776665544
No 142
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=96.68 E-value=0.03 Score=59.10 Aligned_cols=61 Identities=8% Similarity=-0.135 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
+.++++...++.|+++....+....++...+|++.||.+++++.....+|..+++.+...+
T Consensus 114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~ 174 (502)
T TIGR00887 114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV 174 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999999999999999999999999999999999998888776554
No 143
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=96.67 E-value=0.65 Score=48.90 Aligned_cols=56 Identities=20% Similarity=0.190 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhcccc
Q 013020 332 VLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDIT 387 (451)
Q Consensus 332 ~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s 387 (451)
++.|+.--=..+.+=+++.++.|++..+.+.|+|-++.-..+.+|+.+.+++.+.+
T Consensus 388 ~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t 443 (477)
T PF11700_consen 388 VLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT 443 (477)
T ss_pred HHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666666777788899999999999999999999999999999999998887654
No 144
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=96.67 E-value=0.0044 Score=67.55 Aligned_cols=86 Identities=13% Similarity=0.184 Sum_probs=70.1
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeecc--------
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL-------- 103 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~-------- 103 (451)
...+++++-.+.++|.|..-+...+++.|.+++ +++..++.+++.+.++|..+|+++++++.+.+
T Consensus 171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~-------~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~ 243 (633)
T TIGR00805 171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKS-------KNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNT 243 (633)
T ss_pred eehhhHHHHHHHhccCCcchhcCchhhhccCCc-------cccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCC
Confidence 456788899999999999999999999998865 35788899999999999999999888766432
Q ss_pred --------------CccchhhHHHHHHHHHHHHHH
Q 013020 104 --------------GWKVGFGVPAVIMLLSALSFF 124 (451)
Q Consensus 104 --------------g~~~~F~i~~i~~~i~li~f~ 124 (451)
+|+++|.+.++..++..+.++
T Consensus 244 ~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~ 278 (633)
T TIGR00805 244 EDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF 278 (633)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388899988877766555444
No 145
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=96.67 E-value=0.071 Score=54.32 Aligned_cols=62 Identities=15% Similarity=0.008 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
+.++++...++.+++..+..+.....+.+..|++.++..+++......+|..+++.+.....
T Consensus 100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 161 (406)
T PRK15402 100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI 161 (406)
T ss_pred cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777889999999999999999999999999988888877766777777777665543
No 146
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=96.64 E-value=0.079 Score=54.54 Aligned_cols=113 Identities=11% Similarity=0.003 Sum_probs=83.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020 241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 320 (451)
Q Consensus 241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~ 320 (451)
.++++...+..++..|+..++. +|.+. -+-+.+|+++.+++.+...... .
T Consensus 41 g~l~s~~~~g~~i~~~~~g~l~----~r~G~-------r~~~~~g~~l~~~g~~l~~~~~-------------------~ 90 (410)
T TIGR00885 41 ALVQSAFYGGYFIMAIPAAIFM----KKLSY-------KAGILLGLFLYALGAFLFWPAA-------------------E 90 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhCc-------hHHHHHHHHHHHHHHHHHHHHH-------------------h
Confidence 3456666667777777766654 44322 2236678888777766543221 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020 321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
..|.++++...++.++|..+..+....++.+.+|++.++..+++.....++|..+++.+...+
T Consensus 91 ~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l 153 (410)
T TIGR00885 91 IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL 153 (410)
T ss_pred hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 135666677789999999999999999999999999999999999999999999998887665
No 147
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=96.62 E-value=0.095 Score=53.48 Aligned_cols=108 Identities=14% Similarity=0.017 Sum_probs=76.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020 241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 320 (451)
Q Consensus 241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~ 320 (451)
+++.+...+...++.|+..++..+.-|| +=+.++.++.+++.+..++..
T Consensus 41 ~~~~~~~~l~~~l~~~~~G~laDr~grr-----------~vl~~~~~~~~~~~~~~~~~~-------------------- 89 (393)
T PRK11195 41 PLLQMFFVLAYIVLAPFVGAFADSFPKG-----------RVMFIANGIKLLGCLLMLFGI-------------------- 89 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhccCCc-----------hhhHHHHHHHHHHHHHHHHHH--------------------
Confidence 4556666677777788877664333222 124455555555444332221
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
+. +...+++|+++.+..|...+.+.+..|++.++.++|++.....+|..+|+.+.+...
T Consensus 90 --~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~ 148 (393)
T PRK11195 90 --HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA 148 (393)
T ss_pred --HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 344678999999999999999999999999999999999888888888888877654
No 148
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=96.62 E-value=0.04 Score=57.49 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHH
Q 013020 331 LVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYW 410 (451)
Q Consensus 331 y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~ 410 (451)
-++.++++....+.....+.+..| +.|+..+|++.....+|..+++.+...+.+.. +| ..-|+
T Consensus 115 ~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~------gw----------r~~f~ 177 (455)
T TIGR00892 115 GFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF------GW----------RGSFL 177 (455)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh------Ch----------HHHHH
Confidence 367788888776777777777665 68999999999999999988887766543211 34 34566
Q ss_pred HHHHHHHHHHHHHHHH
Q 013020 411 LLTALSMANFLYYLAC 426 (451)
Q Consensus 411 ~la~l~lv~~~~~~~~ 426 (451)
+.++++++..+..++.
T Consensus 178 ~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 178 ILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7777776665544433
No 149
>PRK03893 putative sialic acid transporter; Provisional
Probab=96.60 E-value=0.065 Score=56.13 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
+.++++...++.+++.....+....++.+..|++.|+..+|++....++|+.+++.+...+.
T Consensus 107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV 168 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667778899999999999999999999999999999999999999999999998877654
No 150
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=96.55 E-value=0.044 Score=57.59 Aligned_cols=130 Identities=8% Similarity=-0.056 Sum_probs=76.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccc-cc
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRA-VV 320 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~-~~ 320 (451)
......++.-++.+|+..++-.+.-.|.++| +|. +..|.+..+++++.+++....... +.++..+ ..
T Consensus 43 ~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR----rp~--il~g~~~~~~~l~ll~~~~~~~~~------~~~~~~~~~~ 110 (477)
T TIGR01301 43 IIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR----RPF--IAAGAALVAFAVILIGFAADIGHL------FGDNLDKKTK 110 (477)
T ss_pred HHHHHHHHHHHHHHhHeeehhcCCCCCCCCh----HHH--HHHHHHHHHHHHHHHHhCchhhhh------ccccccccch
Confidence 4556777788888888877655432233222 222 344566677777766654321000 0011000 11
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhh--hHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020 321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMS--SIASTLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~k--g~~~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
...+++.+..+.+..++--...+..-+++.+.+|++.| +...+......++|+.++..+....
T Consensus 111 ~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 111 PRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS 175 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334444455555556666666778999999999876 5678877788899999988877653
No 151
>PRK03633 putative MFS family transporter protein; Provisional
Probab=96.55 E-value=0.094 Score=53.04 Aligned_cols=110 Identities=7% Similarity=-0.036 Sum_probs=79.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 321 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~ 321 (451)
+..+...+.-.+..|+..++..+.-+| +-+.+|.++.+++++..++.
T Consensus 45 ~~~s~~~l~~~~~~~~~g~l~dr~g~k-----------~~~~~~~~~~~~~~~~~~~~---------------------- 91 (381)
T PRK03633 45 VVSSSYFTGNLVGTLLAGYVIKRIGFN-----------RSYYLASLIFAAGCAGLGLM---------------------- 91 (381)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHh----------------------
Confidence 444555555566666665554332222 23567777777776654432
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
-|.++++...++.|++.....|.....+.+..|++.|+..+|.+.....+|..+++.+.....
T Consensus 92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 154 (381)
T PRK03633 92 VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS 154 (381)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 245667778899999999999998888888999999999999999999999999988876653
No 152
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=96.53 E-value=0.06 Score=53.79 Aligned_cols=90 Identities=9% Similarity=-0.104 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHH--HHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCC
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA--STLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI 400 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~--~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~l 400 (451)
|+++++..-++++.++....|...+...+..|++.|+.. .+......++|..+++.+.....+. -+|
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~------~~~----- 154 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG------FGF----- 154 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh------ccc-----
Confidence 344555555677777777888888888888887776643 5666666677777777766654321 033
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 013020 401 NKGHYDYYYWLLTALSMANFLYYLACCK 428 (451)
Q Consensus 401 n~~~~~~~f~~la~l~lv~~~~~~~~~~ 428 (451)
...|++.+.++++..++.+...+
T Consensus 155 -----~~~f~~~~~~~~~~~~~~~~~~~ 177 (375)
T TIGR00899 155 -----TVMFLTAALAFVLCGVLVWLFLP 177 (375)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhCC
Confidence 34566666666666555444334
No 153
>PRK11010 ampG muropeptide transporter; Validated
Probab=96.52 E-value=0.11 Score=54.80 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=77.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHH
Q 013020 282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 361 (451)
Q Consensus 282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~ 361 (451)
+.++.++.+++...+++.. ...+.+|+...+++.+++-....+...++..+..|++.|+..
T Consensus 84 ll~~~i~~~~~~~~~a~~~-------------------~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~ 144 (491)
T PRK11010 84 LLATQLLLLVAIAAMGFLE-------------------PGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAG 144 (491)
T ss_pred HHHHHHHHHHHHHHHHHcC-------------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHH
Confidence 4566666666666555442 124577788888999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 013020 362 STLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLY 422 (451)
Q Consensus 362 ~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~ 422 (451)
+|+......+|..+++.+...+.+.. .+| ...|++.++++++..+.
T Consensus 145 ~~i~~~g~~lG~llg~~l~~~l~~~~-----~GW----------r~~f~i~a~l~ll~~l~ 190 (491)
T PRK11010 145 AAISVLGYRLAMLVSGGLALWLADRY-----LGW----------QGMYWLMAALLIPCIIA 190 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-----cCH----------HHHHHHHHHHHHHHHHH
Confidence 99999999999999987776654210 145 33566667666655443
No 154
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=96.49 E-value=0.1 Score=52.83 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
+.++++...++.+++.....+...++..+..|++.++..++.+.+...+|..+++.+.....
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 156 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT 156 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788999888888888888888889899999999988888888888887776653
No 155
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=96.48 E-value=0.011 Score=61.86 Aligned_cols=86 Identities=10% Similarity=-0.062 Sum_probs=67.7
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhh
Q 013020 280 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 359 (451)
Q Consensus 280 ~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg 359 (451)
+-+.+++++.+++.+..+..-. + ...+.+.++...+++|++|.+..|.....+.+..|++.||
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~---------~--------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg 157 (467)
T PRK09556 95 QFLPFLLILSAICMLGFGASLG---------S--------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRG 157 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHHh---------c--------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcccee
Confidence 3456777777766665554321 0 1245667778889999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhh
Q 013020 360 IASTLSGAGLSAANLVASLIMNA 382 (451)
Q Consensus 360 ~~~g~~~l~~aiG~~l~~~l~~~ 382 (451)
.++|++.....+|..+++.+...
T Consensus 158 ~a~gi~~~~~~lG~~l~~~i~~~ 180 (467)
T PRK09556 158 RFLGFWNISHNLGGAGAGGVALW 180 (467)
T ss_pred eeEEeeecccchhhhHHHHHHHH
Confidence 99999999999999999887644
No 156
>PRK10489 enterobactin exporter EntS; Provisional
Probab=96.42 E-value=0.08 Score=54.21 Aligned_cols=116 Identities=6% Similarity=-0.092 Sum_probs=78.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020 241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 320 (451)
Q Consensus 241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~ 320 (451)
.+..+...+..++..|+..++. .|.+++ +-+.++.++.+++++..++.... .
T Consensus 55 g~~~~~~~l~~~~~~~~~G~l~----dr~g~~-------~~l~~~~~~~~~~~~~~~~~~~~-----------------~ 106 (417)
T PRK10489 55 GLSVTLTGGAMFIGLMVGGVLA----DRYDRK-------KLILLARGTCGLGFIGLALNAFL-----------------P 106 (417)
T ss_pred HHHHHHHHHHHHHHHHhhHHHh----hhcCCc-------eEEEehHHHHHHHHHHHHHHHHc-----------------C
Confidence 3455566666666666665553 332211 12445666666666554433110 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
..+.++++...++.+++..+..+.....+.+..|++.++..++++....++|..+++.+...+.
T Consensus 107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~ 170 (417)
T PRK10489 107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI 170 (417)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 1345666677788999999999999999999999999999999988888888888887776543
No 157
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=96.40 E-value=0.048 Score=57.58 Aligned_cols=83 Identities=8% Similarity=-0.005 Sum_probs=62.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCch--hh
Q 013020 281 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS--MS 358 (451)
Q Consensus 281 ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~--~k 358 (451)
-+.+|.++.+++.+.+++... ... -++....++++|+.+..|....++.++-|++ .|
T Consensus 83 ~~~~g~~~~~~g~~~~~~~~~-------------------~~~--ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~ 141 (489)
T PRK10207 83 TIVLGAIVLAIGYFMTGMSLL-------------------KPD--LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRL 141 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-------------------chh--HHHHHHHHHHhccccccCCHHHHHHHhcCCCchhh
Confidence 467788888887776664310 011 1334678889999999999999999999877 45
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 359 SIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 359 g~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
+..++++++...+|..+++.+...+.
T Consensus 142 ~~~~~~~~~~~nig~~~g~~l~g~l~ 167 (489)
T PRK10207 142 DGAFTLFYMSINIGSLISLSLAPVIA 167 (489)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999988877764
No 158
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=96.38 E-value=0.077 Score=54.61 Aligned_cols=86 Identities=10% Similarity=0.094 Sum_probs=64.3
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheee----------
Q 013020 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ---------- 100 (451)
Q Consensus 31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~---------- 100 (451)
.+.+.+.++..+.++|.|...+...+...+..++ +++.+..++.....++|+.+++.+.+.+.
T Consensus 92 ~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~ 164 (410)
T TIGR00885 92 MNYTLFLVGLFILTAGLGFLETAANPYILVMGPE-------STATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD 164 (410)
T ss_pred ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 3567788889999999999999999998876543 24556678888899999999988776552
Q ss_pred ----------------eccCccchhhHHHHHHHHHHHHH
Q 013020 101 ----------------DNLGWKVGFGVPAVIMLLSALSF 123 (451)
Q Consensus 101 ----------------~~~g~~~~F~i~~i~~~i~li~f 123 (451)
+..+|++.|.+.++..++..+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12469999987766555444433
No 159
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.38 E-value=0.34 Score=51.14 Aligned_cols=84 Identities=18% Similarity=0.116 Sum_probs=68.0
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheee------eccCc
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ------DNLGW 105 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~------~~~g~ 105 (451)
+.+.+.+--.+.++-.+..-|+....++.-|.++ ++..-+.++|-+.++|..+|.++...+. ...||
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~-------e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW 205 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKS-------ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW 205 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChh-------hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence 3455556667888889999999999999999863 5677788899999999999998887763 45799
Q ss_pred cchhhHHHHHHHHHHHH
Q 013020 106 KVGFGVPAVIMLLSALS 122 (451)
Q Consensus 106 ~~~F~i~~i~~~i~li~ 122 (451)
++.|.|.++.+++..++
T Consensus 206 ~~~FiI~G~i~~~~gi~ 222 (495)
T KOG2533|consen 206 RWLFIIEGVITLVLGIV 222 (495)
T ss_pred eeehhHHHHHHHHHHhe
Confidence 99999998877666544
No 160
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=96.35 E-value=0.1 Score=54.37 Aligned_cols=120 Identities=13% Similarity=0.038 Sum_probs=77.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccc
Q 013020 243 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM 322 (451)
Q Consensus 243 l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~ 322 (451)
..+...+..++..++..++..++-|| +=+.++.++.+++.+..++.+...... + .....
T Consensus 60 ~~s~~~ig~~~~~~~~G~l~dr~Grr-----------~~~~~~~~l~~i~~~~~~~~~~~~~~~----~------~~~~~ 118 (479)
T PRK10077 60 CVASALIGCIIGGALGGYCSNRFGRR-----------DSLKIAAVLFFISALGSAWPEFGFTSI----G------PDNTG 118 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHhhccccccc----c------ccchh
Confidence 34444455556666665554333222 124566666666665555432210000 0 00123
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
.+.+++..-++.|++.....|....++.+.+|++.||.++|++.....+|..++..+....
T Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 179 (479)
T PRK10077 119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI 179 (479)
T ss_pred HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667779999999999999999999999999999999999988888888876655443
No 161
>PRK11043 putative transporter; Provisional
Probab=96.35 E-value=0.12 Score=52.38 Aligned_cols=62 Identities=10% Similarity=-0.026 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
+.++++...++++++.....+.....+.+..|++.++...+......++|..+++.+.....
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 154 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL 154 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677788899888888888888999999998888888777667777777776665543
No 162
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.35 E-value=0.17 Score=55.30 Aligned_cols=89 Identities=16% Similarity=0.324 Sum_probs=62.0
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeee----------
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD---------- 101 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~---------- 101 (451)
-..++++|..+.++|.--+ .++|--..||+..+ ++...++.++|..--+|..+|.+++++.-+
T Consensus 236 ~~llff~~q~l~GIG~Tpi----~tlGisYiDDnvk~---~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~ 308 (735)
T KOG3626|consen 236 PFLLFFLGQLLLGIGATPI----FTLGISYIDDNVKK---KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPI 308 (735)
T ss_pred hHHHHHHHHHHhhcCCCCC----ccCCCccccccccc---cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCC
Confidence 3446777777777776554 44555455544432 345678899999999999999887775321
Q ss_pred --------c-cCccchhhHHHHHHHHHHHHHHhcC
Q 013020 102 --------N-LGWKVGFGVPAVIMLLSALSFFLAS 127 (451)
Q Consensus 102 --------~-~g~~~~F~i~~i~~~i~li~f~~g~ 127 (451)
. ..||+||++++..++++.+.++.-=
T Consensus 309 ~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fP 343 (735)
T KOG3626|consen 309 GITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFP 343 (735)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 1 2499999999999988888776533
No 163
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=96.34 E-value=0.16 Score=53.03 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
|++.+...-+++|++|.... ....++++-.|++.|+.++|++..+..+|..+++.++.+.
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46668888899999999999 9999999999999999999999999999999999999883
No 164
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=96.29 E-value=0.07 Score=62.08 Aligned_cols=62 Identities=16% Similarity=-0.045 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
++++++...+++|++..+..|....++.+.+|++.|+.++|+.....++|..+++.+...+.
T Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~ 163 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF 163 (1146)
T ss_pred cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 36677788899999999999999999999999999999999999999999999888877654
No 165
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.28 E-value=1.1 Score=47.06 Aligned_cols=79 Identities=11% Similarity=0.015 Sum_probs=63.7
Q ss_pred hhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 013020 342 MIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL 421 (451)
Q Consensus 342 ~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~ 421 (451)
.|...=+...+.|++-|+.++..-.+..-+.|++.+.....++..- -.++|...++.+++.++
T Consensus 386 gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~-----------------g~~~filF~i~~~~~~i 448 (485)
T KOG0569|consen 386 GPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI-----------------GPYVFILFVIPLAIFLI 448 (485)
T ss_pred CchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------cchhhHHHHHHHHHHHH
Confidence 6777778888999999999999999988899988888776665321 13678888888888888
Q ss_pred HHHHHhhhcCcccCCC
Q 013020 422 YYLACCKAYGPFKGRV 437 (451)
Q Consensus 422 ~~~~~~~~y~~~~~~~ 437 (451)
..+...+--|.|+..|
T Consensus 449 ~~~~~lPETkgr~~~e 464 (485)
T KOG0569|consen 449 YLYRYLPETKGRTPYE 464 (485)
T ss_pred HHHHhCcccCCCCHHH
Confidence 8888888888777666
No 166
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=96.23 E-value=0.56 Score=47.07 Aligned_cols=87 Identities=18% Similarity=0.222 Sum_probs=73.3
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeecc-Cccchhh
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL-GWKVGFG 110 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~-g~~~~F~ 110 (451)
..+.+|.|-.++.+|.+....-+++++-+-|+ +|....-..|-.+.++|+.++..+++.+.++. ||+.+.+
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp--------k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~ 169 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP--------KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALG 169 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc--------cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHH
Confidence 56788899999999999988888888887776 35667778889999999999999999888887 7999988
Q ss_pred HHHHHHHHHHHHHHhc
Q 013020 111 VPAVIMLLSALSFFLA 126 (451)
Q Consensus 111 i~~i~~~i~li~f~~g 126 (451)
.=++.-++++++.+-.
T Consensus 170 ~WAl~allAl~~WlPq 185 (395)
T COG2807 170 FWALLALLALLIWLPQ 185 (395)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8788778888777665
No 167
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=96.20 E-value=0.085 Score=61.54 Aligned_cols=63 Identities=22% Similarity=0.079 Sum_probs=58.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
.|+++++..-+++|+++.+..|...+.+.+..|++.++.++|+.....++|..+|+.+.+++.
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~ 168 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT 168 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888999999999999999999999999999999999999999999999999888765
No 168
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.20 E-value=0.042 Score=57.93 Aligned_cols=95 Identities=18% Similarity=0.151 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCC
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINK 402 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~ 402 (451)
|.+-++...+++|+.|-...|..-.....-=.++.++..||+|+.+.++|+.+|+++...+.+.....+..+|
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW------- 205 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW------- 205 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc-------
Confidence 3444777789999999999999999999999999999999999999999999999999886442222223456
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHh
Q 013020 403 GHYDYYYWLLTALSMANFLYYLACC 427 (451)
Q Consensus 403 ~~~~~~f~~la~l~lv~~~~~~~~~ 427 (451)
.+.|.+-|+++++.+++.++.-
T Consensus 206 ---~~~FiI~G~i~~~~gi~~f~~l 227 (495)
T KOG2533|consen 206 ---RWLFIIEGVITLVLGIVVFFFL 227 (495)
T ss_pred ---eeehhHHHHHHHHHHheEEEEe
Confidence 4678888888888886554433
No 169
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=96.20 E-value=0.22 Score=50.72 Aligned_cols=84 Identities=15% Similarity=0.003 Sum_probs=65.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHH
Q 013020 282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 361 (451)
Q Consensus 282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~ 361 (451)
+.++.++.++++..+++.. ...+++++...+++.++......|...+++.+..|++.|+.+
T Consensus 71 l~~~~~~~~l~~~~l~~~~-------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~ 131 (402)
T PRK11902 71 LLLTQVGLAASIAAMAFCP-------------------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAG 131 (402)
T ss_pred HHHHHHHHHHHHHHHHhcC-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHH
Confidence 5566666666666554431 123566677777888899999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhc
Q 013020 362 STLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 362 ~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
.++.....++|..+++.+...+.
T Consensus 132 ~~~~~~g~~~g~i~g~~l~~~l~ 154 (402)
T PRK11902 132 AAVKVLGYRLAMLVSGGLALWLA 154 (402)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999888999999888766553
No 170
>PRK12382 putative transporter; Provisional
Probab=96.19 E-value=0.0087 Score=60.70 Aligned_cols=85 Identities=13% Similarity=0.044 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHH
Q 013020 34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 113 (451)
Q Consensus 34 ~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~ 113 (451)
...+++..+.++|.|..-|...+...+.+++ ++|.+.+.+++...++|..+++.+.+++.+++||+..|.+.+
T Consensus 303 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~ 375 (392)
T PRK12382 303 WVALAGAALTGAGCSLIFPALGVEVVKRVPS-------QVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGA 375 (392)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 4556666777788887777777777776643 468899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 013020 114 VIMLLSALSFFL 125 (451)
Q Consensus 114 i~~~i~li~f~~ 125 (451)
+..++++++.+.
T Consensus 376 ~~~~~~~~~~~~ 387 (392)
T PRK12382 376 ISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHh
Confidence 888888777654
No 171
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=96.19 E-value=0.12 Score=54.58 Aligned_cols=116 Identities=10% Similarity=0.044 Sum_probs=76.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchh--h
Q 013020 281 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM--S 358 (451)
Q Consensus 281 ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~--k 358 (451)
-+.+|.++.+++.+..++.. .+.+++....++++++.-+..|....++.++.|++. +
T Consensus 90 ~~~~g~~~~~ig~~l~~~~~---------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~ 148 (500)
T PRK09584 90 VIMLGAIVLAIGYALVAWSG---------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRL 148 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhh
Confidence 35667777777665554321 112334456778899999988988899999887543 3
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCcc
Q 013020 359 SIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF 433 (451)
Q Consensus 359 g~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~ 433 (451)
+..+++++....+|..+++.+...+.+.- +| .+-|.+.++.+++..+.++...+.+++.
T Consensus 149 ~~~~~~~~~~~~iG~~~gp~i~g~l~~~~------g~----------~~~F~i~~i~~~i~~i~~~~~~~~~~~~ 207 (500)
T PRK09584 149 DGAFTMYYMSINIGSFFSMLATPWLAAKY------GW----------SVAFALSVVGMLITVVNFAFCQRWVKQY 207 (500)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhh------CH----------HHHHHHHHHHHHHHHHHHHHhHHHhccC
Confidence 45678888888999999988887664210 23 3455666666666666676666666543
No 172
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=96.03 E-value=0.26 Score=49.06 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=53.6
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeee----------
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD---------- 101 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~---------- 101 (451)
+.+.++++..+.++|.+.+ +...++.+|.+++ ++|....+++....|+|..+++.+.+.+..
T Consensus 90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~ 161 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPK-------KIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA 161 (366)
T ss_pred hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCH-------hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4566777888888887665 4456788888764 356778888888888888887766655443
Q ss_pred ccCccchh-hHHHHHH
Q 013020 102 NLGWKVGF-GVPAVIM 116 (451)
Q Consensus 102 ~~g~~~~F-~i~~i~~ 116 (451)
+.+|++.| .+.++..
T Consensus 162 ~~~w~~~~~~~~~~~~ 177 (366)
T TIGR00886 162 HLAWGWAFVIVPAGIL 177 (366)
T ss_pred cccccchhHHHHHHHH
Confidence 34899999 4434433
No 173
>PTZ00207 hypothetical protein; Provisional
Probab=96.01 E-value=0.22 Score=53.68 Aligned_cols=116 Identities=11% Similarity=0.061 Sum_probs=82.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhH
Q 013020 281 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSI 360 (451)
Q Consensus 281 ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~ 360 (451)
=+.+|.++.+++.+..++... + ....+++.+....++.|+|+.+..+.....+.+..| +.||.
T Consensus 93 vllig~ll~~iG~ll~ala~~---------~-------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~ 155 (591)
T PTZ00207 93 IFVLSMTVFCLGTLLFALTFQ---------E-------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGA 155 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---------c-------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHH
Confidence 456888888888887766421 1 012466767788899999999999999988888887 67899
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 013020 361 ASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 430 (451)
Q Consensus 361 ~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y 430 (451)
++|++....++|..+.+.+...+-.. + ...+|++++++.++..++.+...+..
T Consensus 156 a~Gi~~~~~gLGsaI~~~l~~~l~~~-------~----------~~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 156 VVAIMKTFTGLGSAILGSIQLAFFSD-------N----------TSAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------h----------HHHHHHHHHHHHHHHHHHHHhheeCC
Confidence 99999999999997644444332210 1 24567778888777776666655544
No 174
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=95.98 E-value=0.28 Score=49.98 Aligned_cols=112 Identities=15% Similarity=-0.008 Sum_probs=72.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 321 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~ 321 (451)
+..++..+.-.+..|+..++. .|.+ +.+-+.+|.++.+++.+....... ..
T Consensus 52 ~~~~~~~~~~~i~~~~~g~l~----dr~g-------~k~~l~~~~~~~~~~~~~~~~~~~------------------~~ 102 (402)
T TIGR00897 52 SAFTLYGIAAAISAWISGVVA----EIIG-------PLKTMMIGLLLWCVGHAAFIVFGL------------------GH 102 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHcC-------cHHHHHHHHHHHHHHHHHHHHHhc------------------cC
Confidence 344555555666666666654 3321 112245666666666543322210 01
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHH-HHHHHHhhh
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAAN-LVASLIMNA 382 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~-~l~~~l~~~ 382 (451)
.+++.++..+++.+++.....+.....+.+..|++.|+.++|++....++|. .+++.+...
T Consensus 103 ~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~ 164 (402)
T TIGR00897 103 ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY 164 (402)
T ss_pred ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2455556678888999888888888888888999999999999999888886 466665543
No 175
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=0.012 Score=59.45 Aligned_cols=107 Identities=20% Similarity=0.194 Sum_probs=85.6
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh
Q 013020 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG 110 (451)
Q Consensus 31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~ 110 (451)
.++++++++-.+=++|.++...+-.++++|.|.++. +|.+...+---.+.+|.++||-+.+.+-+..|+.+.|+
T Consensus 157 ~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~------er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFl 230 (464)
T KOG3764|consen 157 NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN------ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFL 230 (464)
T ss_pred chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch------hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHH
Confidence 456788999999999999999999999999998763 47888888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHhcCccEeec--CCCCCchhHH
Q 013020 111 VPAVIMLLSALS-FFLASPFYVKS--KANTSLLPGL 143 (451)
Q Consensus 111 i~~i~~~i~li~-f~~g~~~~~~~--~p~~~~l~~~ 143 (451)
+.++++++...+ ++.-.++-.++ .+++.|+.++
T Consensus 231 VL~~v~Lld~~L~l~vi~p~~~~~~~~~~~~~~~~L 266 (464)
T KOG3764|consen 231 VLAIVLLLDGALQLLVIEPTEMDPDSTEQGTPMWSL 266 (464)
T ss_pred HHHHHHHHHHHHHHheeCccccCccccccCccHHHH
Confidence 998888777655 44444422222 3455565543
No 176
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=95.90 E-value=2.1 Score=44.70 Aligned_cols=83 Identities=12% Similarity=-0.024 Sum_probs=54.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcc-------cC
Q 013020 282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTE-------LP 354 (451)
Q Consensus 282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~-------aP 354 (451)
+.+|.++.+++.+...+.. .-+.++.+...++.++|-.+..+.--+++.+. +-
T Consensus 305 ~~~~~~~~~i~~~~~~f~~--------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG 364 (467)
T COG2211 305 FLIGLLLLAVGYLLLYFTP--------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTG 364 (467)
T ss_pred HHHHHHHHHHHHHHHHhhc--------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhC
Confidence 4566777777776665552 13344455555677777777666666665543 45
Q ss_pred chhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 355 KSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 355 ~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
++..|..-|...+..=+|..+++.+..+.=
T Consensus 365 ~R~eGi~~s~~tF~~K~g~ala~~~~g~~L 394 (467)
T COG2211 365 VRREGIVYSGMTFFRKLGLALAGFIPGWIL 394 (467)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889989888887777777776665543
No 177
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=95.90 E-value=0.1 Score=54.51 Aligned_cols=157 Identities=13% Similarity=0.023 Sum_probs=100.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 321 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~ 321 (451)
+....+++...+..|++.+. . +|. .+..+-+.+|.++++++-++...+|.. +
T Consensus 75 ~viaa~slg~~i~~liF~~W-s---~k~------~~~k~Pli~s~ii~~~g~llY~~l~~~------------------~ 126 (488)
T KOG2325|consen 75 LVIAASSLGHAIFSLIFGIW-S---NKT------GSVKKPLIVSFLIAIIGNLLYLALAYV------------------P 126 (488)
T ss_pred HHHHHHHHHHHhcchhhccc-c---ccc------CCcccCHHHHHHHHHHHHHHHHHHHhc------------------c
Confidence 45566888889999999873 1 221 133444788999999988887666642 2
Q ss_pred c-hHHHHHHHHHHHHHH-HHHHhhhhHHHhhcccCchhhhHHHHHH--hHHHHHHHHHHHHHhhhhccccccCCCCCCCC
Q 013020 322 M-SAMWQLPYLVLSGLA-MAFNMIGQTEFYYTELPKSMSSIASTLS--GAGLSAANLVASLIMNAVDDITKRGGNGGWIP 397 (451)
Q Consensus 322 ~-s~~wli~~y~l~~ig-El~~~p~g~ef~~~~aP~~~kg~~~g~~--~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~ 397 (451)
- +.++++..+++.|+| -.+..--.+--..+-.+++.|+++.+.. -++..+|-.++..+..+-++. -.|++
T Consensus 127 ~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G------~~i~~ 200 (488)
T KOG2325|consen 127 NGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKG------FMILP 200 (488)
T ss_pred cchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCc------eEEcC
Confidence 2 678889999999999 6666667776666677888887776655 344445555555555443322 23455
Q ss_pred -CCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCccc
Q 013020 398 -SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK 434 (451)
Q Consensus 398 -~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~ 434 (451)
-.+|...... |+.+++.++..++.....|--.+..
T Consensus 201 ~~~~n~YTap~--w~m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 201 GLIFNMYTAPA--WLMAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred cceEEecchHH--HHHHHHHHHHHHHHHhheeecccCc
Confidence 3455443333 4566677777766665555544333
No 178
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=95.76 E-value=0.12 Score=51.58 Aligned_cols=89 Identities=12% Similarity=0.145 Sum_probs=65.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHH
Q 013020 282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 361 (451)
Q Consensus 282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~ 361 (451)
+.+|.++.+++.+..++.... .. ......++++...+++|++.....+....++.+..|++.|+.+
T Consensus 68 l~~~~~~~~~~~~~~~~~~~~-----~~---------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~ 133 (394)
T TIGR00883 68 LVITLLMMGIGTLLIGLLPSY-----AT---------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFY 133 (394)
T ss_pred HHHHHHHHHHHHHHHhhCCCh-----hh---------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHH
Confidence 456777777766655544210 00 0012233466777999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhc
Q 013020 362 STLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 362 ~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
++.+.....+|..+++.+.....
T Consensus 134 ~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 134 GSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888765543
No 179
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=95.73 E-value=0.13 Score=54.21 Aligned_cols=89 Identities=11% Similarity=0.137 Sum_probs=66.1
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhH
Q 013020 281 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSI 360 (451)
Q Consensus 281 ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~ 360 (451)
-+.+++++.+++.+..++....- .-| ...+.+++..-+++|+++-...+.+..++.+..|++.||.
T Consensus 89 ~l~~~~~l~~i~~~~~a~~~~~~-----~~g---------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~ 154 (490)
T PRK10642 89 ILAITIVIMSISTFCIGLIPSYA-----TIG---------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGF 154 (490)
T ss_pred HHHHHHHHHHHHHHHHHhcccHH-----HHH---------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcH
Confidence 35677888887777766653110 000 1122346778899999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhh
Q 013020 361 ASTLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 361 ~~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
+++++.....+|..+++.+..++
T Consensus 155 ~~~~~~~~~~~G~~lg~~~~~~~ 177 (490)
T PRK10642 155 MGSWLDFGSIAGFVLGAGVVVLI 177 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888887665443
No 180
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=95.71 E-value=1.3 Score=45.27 Aligned_cols=93 Identities=10% Similarity=0.016 Sum_probs=67.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHH---HHHHHHHHHHHHHHHhhhhHHHhhcccCchh
Q 013020 281 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMW---QLPYLVLSGLAMAFNMIGQTEFYYTELPKSM 357 (451)
Q Consensus 281 ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~w---li~~y~l~~igEl~~~p~g~ef~~~~aP~~~ 357 (451)
-|-.|+++.+.+..++.+.-...... + + ....-++.| ....|++.|+|=-......+++..+.+||+-
T Consensus 52 yI~~G~~~~~~g~~~ap~a~~~l~~~----~--~---~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~ 122 (403)
T PF03209_consen 52 YIWGGTLLQAGGLAIAPFALLLLAES----G--Q---QSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER 122 (403)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccc----c--c---ccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh
Confidence 35667777777776666554321110 0 0 011233444 3578999999999999999999999999999
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHhhh
Q 013020 358 SSIASTLSGAGLSAANLVASLIMNA 382 (451)
Q Consensus 358 kg~~~g~~~l~~aiG~~l~~~l~~~ 382 (451)
|+...++-+...=+|..+++.+.+.
T Consensus 123 R~~~v~ivw~Mli~G~iv~ai~~g~ 147 (403)
T PF03209_consen 123 RPRVVAIVWVMLIVGIIVSAIVFGR 147 (403)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888876654
No 181
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=95.60 E-value=2 Score=45.13 Aligned_cols=82 Identities=11% Similarity=0.026 Sum_probs=64.3
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh-
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG- 110 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~- 110 (451)
+...+.+.-++.++|.|..- .....+..-+++ ++|.+..+++-.+.++|.++++.++++ -.++||+.=+-
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~-------kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~L 184 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP-------SRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTL 184 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHH
Confidence 46677778889999999988 888888888874 578999999999999999999998888 44678875443
Q ss_pred --HHHHHHHHHHHH
Q 013020 111 --VPAVIMLLSALS 122 (451)
Q Consensus 111 --i~~i~~~i~li~ 122 (451)
|+...+.+++++
T Consensus 185 n~Isl~s~~~a~~~ 198 (511)
T TIGR00806 185 NIISLVFMTFSVFL 198 (511)
T ss_pred HHHHHHHHHHHHHH
Confidence 455556666554
No 182
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=95.55 E-value=0.16 Score=52.00 Aligned_cols=85 Identities=14% Similarity=0.075 Sum_probs=59.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhccc-CchhhhH
Q 013020 282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTEL-PKSMSSI 360 (451)
Q Consensus 282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~a-P~~~kg~ 360 (451)
+.+|.++.+++++.+.... .. ......+|.+..+++.+++..+..+.-.+.....+ |++.|+.
T Consensus 73 i~~~~~~~~i~~~~~~~~~--------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~ 136 (437)
T TIGR00792 73 LLIGAIPFSIVLVLLFTTP--------DF--------SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERES 136 (437)
T ss_pred HHHhHHHHHHHHHHHHhCC--------CC--------CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHH
Confidence 5567666666665544321 00 01234678888889999999988887778877776 5788999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhh
Q 013020 361 ASTLSGAGLSAANLVASLIMNA 382 (451)
Q Consensus 361 ~~g~~~l~~aiG~~l~~~l~~~ 382 (451)
..+.......+|..+++.+...
T Consensus 137 ~~~~~~~~~~~g~~l~~~~~~~ 158 (437)
T TIGR00792 137 LSTFRRFGATLGGLLVAVIVLP 158 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888778887777655433
No 183
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=95.48 E-value=0.04 Score=56.08 Aligned_cols=115 Identities=13% Similarity=0.116 Sum_probs=89.2
Q ss_pred CCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCc
Q 013020 276 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 355 (451)
Q Consensus 276 ~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~ 355 (451)
.+|-+=+++|++++++..+..++. .|++.+...+++.|.-+-.-.|.....++.--|+
T Consensus 91 ~npr~fm~~gLilsai~nil~Gfs----------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr 148 (448)
T COG2271 91 SNPRYFMAFGLILSAIVNILFGFS----------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR 148 (448)
T ss_pred CCCceeehHHHHHHHHHHHHHhhh----------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc
Confidence 355666789999999999887655 3667778889999999999999999999999999
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHhh--hhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 013020 356 SMSSIASTLSGAGLSAANLVASLIMN--AVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCK 428 (451)
Q Consensus 356 ~~kg~~~g~~~l~~aiG~~l~~~l~~--~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~ 428 (451)
+.||...++|..+-.+|..+.+.++. .+... .+| ..-|..=++++++.+++.+..-|
T Consensus 149 ~eRG~~~siWn~shNiGGal~~~~~~la~~~~~------~~w----------~~~f~~pgiiaiival~~~~~~r 207 (448)
T COG2271 149 KERGTWWSIWNTSHNIGGALAPLVALLAFFAFH------GGW----------RAAFYFPGIIAIIVALILLFLLR 207 (448)
T ss_pred cccCceEEEehhhhhcccchHHHHHHHHHHHhc------cch----------hHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999998883 33211 034 23355567777766665554433
No 184
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=95.34 E-value=4.6 Score=42.70 Aligned_cols=81 Identities=14% Similarity=0.059 Sum_probs=60.8
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+.+.+.+.-.+.+++.++.-.+...+++|.+.+ ++|...-++ +.....|+.+++...+|+-. +|++-+.+
T Consensus 170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~-------~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~ 239 (521)
T KOG0255|consen 170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSP-------KQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWI 239 (521)
T ss_pred cHHHHHHHHHHHHhhccchhHHhHhhheeecCc-------chhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHH
Confidence 445556666667777888888888888888875 356666666 78888888888888888776 89999998
Q ss_pred HHHHHHHHHHH
Q 013020 112 PAVIMLLSALS 122 (451)
Q Consensus 112 ~~i~~~i~li~ 122 (451)
..+.-++.++.
T Consensus 240 ~~~~~~~~~~~ 250 (521)
T KOG0255|consen 240 ISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHH
Confidence 77776666555
No 185
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=95.34 E-value=0.56 Score=46.71 Aligned_cols=108 Identities=13% Similarity=0.174 Sum_probs=71.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020 241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 320 (451)
Q Consensus 241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~ 320 (451)
.+..+.+.+...+..|+..++. +|.++| +-+.+|+++.+++.+.. .
T Consensus 38 g~~~s~~~~~~~~~~~~~g~l~----dr~g~r-------~~~~~~~~~~~~~~~~~--~--------------------- 83 (355)
T TIGR00896 38 GLLTALPVLCFAVLAPLAPWLA----RRFGEE-------RSVAAGLLLIAAGILIR--S--------------------- 83 (355)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH----HHhCch-------HHHHHHHHHHHHHHHHH--H---------------------
Confidence 3455667777777777777654 332221 22556666555544332 1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020 321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
..+.++++...++.+++..+..+.....+.+..|+ .|+..+|++.....+|..+++.+....
T Consensus 84 ~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~~~~~~~l 145 (355)
T TIGR00896 84 APGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-RVGLMTGLYSMALMGGAALAAAATVPL 145 (355)
T ss_pred hccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 02344455667889999988887777777777764 789999999888888888887766554
No 186
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=95.31 E-value=0.027 Score=58.06 Aligned_cols=85 Identities=11% Similarity=0.087 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHH-HHHHHHHHHHhhhhheeeec------cCc
Q 013020 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY-VFVSASSIVAVTCIVYIQDN------LGW 105 (451)
Q Consensus 33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY-~~iNiGa~i~~~~~~~i~~~------~g~ 105 (451)
...+++...+.+++.|...+....++++.+++ ++|.+.+++++ +..++|+.+++.+.+++.++ +||
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~-------~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~ 380 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPV-------HIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDW 380 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCch
Confidence 35567777888888888888888999998874 46788999997 56789999999999998877 469
Q ss_pred cchhhHHHHHHHHHHHHHH
Q 013020 106 KVGFGVPAVIMLLSALSFF 124 (451)
Q Consensus 106 ~~~F~i~~i~~~i~li~f~ 124 (451)
+..|.++++..+++.+.++
T Consensus 381 ~~~f~~~~~~~~i~~~l~~ 399 (418)
T TIGR00889 381 QTMWLFFAGYIAILAVLFM 399 (418)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999888777666655544
No 187
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=95.26 E-value=1 Score=47.10 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=72.3
Q ss_pred cccCchhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 013020 237 EIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDL 316 (451)
Q Consensus 237 ~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~ 316 (451)
++.++++..+..+..+... +.....-++..|.+. -+-+.+++++.++..+..++... +
T Consensus 66 ~ls~~q~g~l~ai~~l~~a-l~rip~G~l~Dr~G~-------R~v~~~~~ll~~i~~~~~~~a~~-------~------- 123 (462)
T PRK15034 66 NFTTDQLFLLTALPSVSGA-LLRVPYSFMVPIFGG-------RRWTVFSTAILIIPCVWLGIAVQ-------N------- 123 (462)
T ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC-------hHHHHHHHHHHHHHHHHHHHHHc-------c-------
Confidence 4555555545554444333 222333444555432 22345666666666665554310 0
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHh----HHHHHHHHHHHHHh
Q 013020 317 RAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG----AGLSAANLVASLIM 380 (451)
Q Consensus 317 ~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~----l~~aiG~~l~~~l~ 380 (451)
...|++.++...++.|++ ....+.++..+....|++.||.++|++. +...++..+.+.+.
T Consensus 124 ---~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i 187 (462)
T PRK15034 124 ---PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI 187 (462)
T ss_pred ---cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 124677788889999998 5578889999999999999999999984 33444444444433
No 188
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=95.22 E-value=0.52 Score=49.45 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhh
Q 013020 324 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMN 381 (451)
Q Consensus 324 ~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~ 381 (451)
.+.++...+++|+++.... .....+.+..|++.||..+|++.....+|..+++.+..
T Consensus 124 ~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~ 180 (476)
T PLN00028 124 ATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMP 180 (476)
T ss_pred HHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556788999987644 34567788899999999999987655566666554443
No 189
>PRK10133 L-fucose transporter; Provisional
Probab=95.12 E-value=1.3 Score=45.87 Aligned_cols=110 Identities=13% Similarity=-0.006 Sum_probs=75.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccc
Q 013020 243 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM 322 (451)
Q Consensus 243 l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~ 322 (451)
+.+...+...+..|+...+. +|.+. -+-+.+|+++.+++.+...... ...
T Consensus 66 ~~~~~~~g~~i~~~~~g~l~----dr~G~-------r~~l~~g~~~~~~~~~l~~~~~-------------------~a~ 115 (438)
T PRK10133 66 IQSAFYFGYFIIPIPAGILM----KKLSY-------KAGIITGLFLYALGAALFWPAA-------------------EIM 115 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhCc-------HHHHHHHHHHHHHHHHHHHHHH-------------------hcC
Confidence 34455555666666665554 44322 1235677777777775532211 124
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhh
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNA 382 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~ 382 (451)
++++++...+++|+|..+..+....++.+.+|++.+...++++....++|..+++.+...
T Consensus 116 ~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888999999999999999999988888888777888888888888888777654
No 190
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=94.96 E-value=0.32 Score=51.05 Aligned_cols=115 Identities=12% Similarity=0.146 Sum_probs=85.9
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhh
Q 013020 279 KLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMS 358 (451)
Q Consensus 279 ~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~k 358 (451)
-+-+.++.++.+++-+...+.. ..+.+.++..-+++|++|-...|.--....+=+|+..|
T Consensus 103 r~v~~~~~~~sa~~t~l~P~aa--------------------~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Er 162 (466)
T KOG2532|consen 103 RRVFFISGLISALLTLLTPLAA--------------------SIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNER 162 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--------------------HhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHH
Confidence 3456788888887777666553 24444567788999999999999999999999999999
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 013020 359 SIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCK 428 (451)
Q Consensus 359 g~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~ 428 (451)
+...++.+...-+|+.++-.+++..-+.+ -|| +.-|.+.|+++++-.++++...+
T Consensus 163 s~~~ail~~g~q~g~v~~mp~sg~lc~s~-----~GW----------~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 163 STFIAILTAGSQLGTIITMPVSGLLCESS-----LGW----------PSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccC-----CCC----------chHHHHHHHHHHHHHHHHHHHhc
Confidence 99999998888888888877666654321 267 23455677777776666655544
No 191
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=94.84 E-value=0.096 Score=56.24 Aligned_cols=214 Identities=15% Similarity=0.125 Sum_probs=116.2
Q ss_pred hHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHH
Q 013020 34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 113 (451)
Q Consensus 34 ~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~ 113 (451)
...|+...+..-+ +..++|++.+.|+++..+... ..+.-.|..+|+.||+++++..+. .|+++.
T Consensus 60 lv~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l~g---~~laD~f~gry~tI~~~s~i~~~G------------~~~lt~ 123 (571)
T KOG1237|consen 60 LVTYLTLELHASG-GGAANNVNAFGGTQFLLPLLG---AFLADSFLGRYFTINIGSLISLLG------------LFGLTL 123 (571)
T ss_pred HHHHHHHHhccch-HHHHHHHHHHhhHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHH
Confidence 3455666666666 889999999999999885432 467788999999999999998754 667777
Q ss_pred HHHHHHHHHHHhcCccEeecC-CCCCchhHHHHHHHHHHHhcCCCCCC-cccchhhccCCCccccCCCCchhhhhhhhhh
Q 013020 114 VIMLLSALSFFLASPFYVKSK-ANTSLLPGLTQVLVASFKNRRTKLPT-QATEEMYHHGKGSMRLMPSENLRFLNKACMA 191 (451)
Q Consensus 114 i~~~i~li~f~~g~~~~~~~~-p~~~~l~~~~~vl~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 191 (451)
..++.++..+-+ .+.... ..++|-+....++..++......... +++..-+. .+++.-.+.-..
T Consensus 124 ~a~~~~l~p~~~---~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fG----------adQfd~~~~~~~- 189 (571)
T KOG1237|consen 124 SAMIPALLPFMC---KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFG----------ADQFDELDPVEV- 189 (571)
T ss_pred HHHhhhcCCccc---cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhc----------ccccCccCcchh-
Confidence 777766655443 111111 12223333333444444332111100 00000000 011110000000
Q ss_pred cCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccC-cCCCCccccCchhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Q 013020 192 KHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDR-HVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIK 270 (451)
Q Consensus 192 ~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~-~~~~g~~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~ 270 (451)
........|..++ .+....- .+...++. ... +|.+-++..+..|.+.+++|.|....+.++.
T Consensus 190 --------~~~~~fFnW~yf~-~~~g~l~--a~t~~vyiq~~~-~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~----- 252 (571)
T KOG1237|consen 190 --------KGIPSFFNWFYFS-QNGGALL--AQTVLVYIQDNV-GWKLGFGIPTVLNALAILIFLPGFPFYRYKK----- 252 (571)
T ss_pred --------hCcccchhHHHHH-HHHHHHH--HHHHHHhhhhcc-cceeeccHHHHHHHHHHHHHHcCceeEEeeC-----
Confidence 0001234454332 2222111 11122222 112 6888888999999999999988877654332
Q ss_pred CCCCCCCcchhhhHhHHHHHHHHHHHHHH
Q 013020 271 GKPCQLSLKLRMGIGLLFSTASMTAWAIV 299 (451)
Q Consensus 271 ~~~~~~s~~~ki~iG~~l~~~s~lv~~~~ 299 (451)
+.| + .+..+|.++.+++.-..+..
T Consensus 253 --p~g-s--p~t~i~~Vlvaa~~k~~~~~ 276 (571)
T KOG1237|consen 253 --PRG-S--PKTRIGQVLVAAAFKRKAVV 276 (571)
T ss_pred --CCC-C--chhHHHHHHHHHHHHHhccC
Confidence 222 3 67788888888888765544
No 192
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=94.74 E-value=2.4 Score=43.16 Aligned_cols=67 Identities=9% Similarity=-0.038 Sum_probs=50.8
Q ss_pred CCccchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeee
Q 013020 28 ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD 101 (451)
Q Consensus 28 ~~~~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~ 101 (451)
+......++..+|.+++.|.|..+....++++..-++... .+|- |.---..-+|+.++|.+.+++-.
T Consensus 99 a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a----~~rl---nl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 99 ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA----AFRL---NLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH----HHHH---HHHHHhhhhHHHHHHHHHHHHHH
Confidence 3445678888899999999999999999999999886533 2333 33444456899999988776544
No 193
>PRK15011 sugar efflux transporter B; Provisional
Probab=94.63 E-value=1.2 Score=45.26 Aligned_cols=89 Identities=10% Similarity=-0.108 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhh--hHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCC
Q 013020 324 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMS--SIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN 401 (451)
Q Consensus 324 ~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~k--g~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln 401 (451)
.+++.....+.+..+....|.....+.+..|++-| +.+.+......++|..+++.+...+.+.- +|
T Consensus 105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~------gw------ 172 (393)
T PRK15011 105 YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF------SF------ 172 (393)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc------Ch------
Confidence 34443344555555667788888888777666533 45667777778888888888877664211 44
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhh
Q 013020 402 KGHYDYYYWLLTALSMANFLYYLACCK 428 (451)
Q Consensus 402 ~~~~~~~f~~la~l~lv~~~~~~~~~~ 428 (451)
..-|+..+++.++..+..+...|
T Consensus 173 ----~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 173 ----TVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhcC
Confidence 34566677666666555444333
No 194
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=94.47 E-value=1.1 Score=47.83 Aligned_cols=115 Identities=13% Similarity=0.087 Sum_probs=78.4
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccc
Q 013020 240 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV 319 (451)
Q Consensus 240 ~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~ 319 (451)
.+.++....+..+++.|+-..+..++-||+ -+..+-++.++..+++++.... |
T Consensus 47 valv~~a~~LP~~Llsl~aG~laDr~drrr-----------ili~~~~~~~~~~~~L~~l~~~--------~-------- 99 (524)
T PF05977_consen 47 VALVQAASTLPILLLSLFAGALADRFDRRR-----------ILILSQLLRALVALLLAVLAFF--------G-------- 99 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchH-----------HHHHHHHHHHHHHHHHHHHHHh--------C--------
Confidence 445677788888888887776654432221 1233333333333333333210 1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhh
Q 013020 320 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNA 382 (451)
Q Consensus 320 ~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~ 382 (451)
.+++|.++..-++.+++..+..|.-.+.+-++.|++.-..+.++......++..+|+.+.+.
T Consensus 100 -~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~ 161 (524)
T PF05977_consen 100 -LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGI 161 (524)
T ss_pred -cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHH
Confidence 47788788888999999999999999999999999988888887777777666666655554
No 195
>PRK09952 shikimate transporter; Provisional
Probab=94.39 E-value=0.54 Score=48.70 Aligned_cols=110 Identities=9% Similarity=0.092 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHH
Q 013020 253 IWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLV 332 (451)
Q Consensus 253 i~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~ 332 (451)
+..|+-..+.-++..|.++ .+-+.+++++.+++.+..++.... .. ....+++.++..-+
T Consensus 75 ~~~~~g~~~~G~l~Dr~Gr-------r~~l~~~~~~~~~~~~~~~~~~~~-----~~---------~~~~~~~~l~~~R~ 133 (438)
T PRK09952 75 LFRPLGGVVFGHFGDRLGR-------KRMLMLTVWMMGIATALIGLLPSF-----ST---------IGWWAPVLLVTLRA 133 (438)
T ss_pred HHHhhHHHHHHHHHHhhcc-------HHHHHHHHHHHHHHHHHHhcCCcH-----HH---------HHHHHHHHHHHHHH
Confidence 3345555555555555432 223556777777666655544210 00 00012334666778
Q ss_pred HHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020 333 LSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 333 l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
++|+++-...|....++.+.+|++.||.+++......++|..++..+...+
T Consensus 134 l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l 184 (438)
T PRK09952 134 IQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLI 184 (438)
T ss_pred HHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998999998887665544
No 196
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=94.29 E-value=1 Score=47.59 Aligned_cols=85 Identities=9% Similarity=0.075 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhhhHHHhhcccCch--hhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHH
Q 013020 331 LVLSGLAMAFNMIGQTEFYYTELPKS--MSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYY 408 (451)
Q Consensus 331 y~l~~igEl~~~p~g~ef~~~~aP~~--~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~ 408 (451)
..+..+|--+..+....++.++-|++ .|+...++.+....+|..+++.+...+.+.. +| ..-
T Consensus 107 l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~------Gw----------~~~ 170 (493)
T PRK15462 107 LAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY------SW----------AMG 170 (493)
T ss_pred HHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh------Ch----------HHH
Confidence 34455666666676677888888875 6888899999888899999998887764211 33 344
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Q 013020 409 YWLLTALSMANFLYYLACCKAYG 431 (451)
Q Consensus 409 f~~la~l~lv~~~~~~~~~~~y~ 431 (451)
|...++.+++..+.++...|++.
T Consensus 171 F~iaaigm~l~li~~~~~~~~l~ 193 (493)
T PRK15462 171 FGLAAVGMIAGLVIFLCGNRHFT 193 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Confidence 55555556666666655555554
No 197
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=94.24 E-value=7.5 Score=40.75 Aligned_cols=59 Identities=12% Similarity=-0.103 Sum_probs=41.7
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 013020 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV 97 (451)
Q Consensus 31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~ 97 (451)
.+...+++.-.+.++| |..-+.....+++.|++ +++..+..++-..-|+|..++..+.+
T Consensus 126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~-------~~rG~A~Gi~~g~G~~G~~l~~~l~p 184 (462)
T PRK15034 126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPK-------AKQGSALGINGGLGNLGVSVMQLVAP 184 (462)
T ss_pred CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH-------hHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3466777777888888 55557778888888875 35777888886677777766554443
No 198
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=94.23 E-value=0.33 Score=49.11 Aligned_cols=127 Identities=8% Similarity=-0.013 Sum_probs=85.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCch---hh
Q 013020 282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS---MS 358 (451)
Q Consensus 282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~---~k 358 (451)
+.+|.++..++.+++.+... +. .. ....+...+.....++++|.-++-|....+..+|-+++ .+
T Consensus 4 I~~g~~~~~~G~~ll~l~~~------~~-~~------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~ 70 (372)
T PF00854_consen 4 ILLGSIVYLLGHVLLTLSAI------PP-SL------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRR 70 (372)
T ss_dssp HHHHHHHHHHHHHH--HHHT------SS-SC------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHH
T ss_pred hhHHHHHHHHHHHHhHHHHh------cc-hh------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhh
Confidence 56788888888877655531 00 00 12345566777788999999999999999999997766 34
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCcccCCC
Q 013020 359 SIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV 437 (451)
Q Consensus 359 g~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~~~~ 437 (451)
......++....+|..++..+...+.+- .+ ....|++-++.++++.+.|+...++|+++.+..
T Consensus 71 ~~~F~~fY~~in~G~~~~~~~~~~i~~~------~~----------~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~ 133 (372)
T PF00854_consen 71 DSFFNWFYWGINIGSLFSPTLVPYIQQN------YG----------WFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPG 133 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHC------S-----------HHHHHHHHHHHHHHHHHHHHCCCCTT--S----
T ss_pred hhhHHHHHHHHhhhhHhhcccchhhccc------cc----------hhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccC
Confidence 5555667888899999998777666521 12 456788888899999999999999998874443
No 199
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=94.20 E-value=0.0093 Score=63.67 Aligned_cols=151 Identities=13% Similarity=0.051 Sum_probs=3.0
Q ss_pred CcchhhhHhHHHHHHHHHHHHHHHHHHH----Hhhh-----h---cCCC------------CCc----cccccchHHHHH
Q 013020 277 SLKLRMGIGLLFSTASMTAWAIVEAARR----SIAI-----N---EGIS------------DDL----RAVVQMSAMWQL 328 (451)
Q Consensus 277 s~~~ki~iG~~l~~~s~lv~~~~e~~~~----~~~~-----~---~g~~------------~~~----~~~~~~s~~wli 328 (451)
+.++-+++|.++.+++.++.++-+..-- .... + ..+- +++ ......-+++++
T Consensus 66 hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 145 (539)
T PF03137_consen 66 HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFI 145 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHH
Confidence 4467799999999999999886644211 0000 0 0000 000 111122345667
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHH----HHHHHHhhhhcccccc--------CCCCCCC
Q 013020 329 PYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAAN----LVASLIMNAVDDITKR--------GGNGGWI 396 (451)
Q Consensus 329 ~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~----~l~~~l~~~~~~~s~~--------~~~~~w~ 396 (451)
...+++|+|..-+++.|.+++.+.++++..++++|+.+....+|- .+|+.+.+++-+.... .++..|+
T Consensus 146 ~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~Wv 225 (539)
T PF03137_consen 146 LGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWV 225 (539)
T ss_dssp ------SSS-----------------------------------------------------------------------
T ss_pred HHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHH
Confidence 778999999999999999999999999999999999998776665 4445555454333221 1122333
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCcc
Q 013020 397 PSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF 433 (451)
Q Consensus 397 ~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~ 433 (451)
.. -=.=|.+.+.+.++.++-++.+=|++.+.
T Consensus 226 GA------WWLGfli~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 226 GA------WWLGFLICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp -------------------------------------
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 10 00113456677777777777666666655
No 200
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=93.88 E-value=0.35 Score=47.74 Aligned_cols=63 Identities=13% Similarity=0.010 Sum_probs=57.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
-|..+.+..+++++.|-.+.-++...++....|++.++..+++-....++|..+++.+.+.+-
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 467778899999999999999999999999999989999999999999999999999888654
No 201
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.70 E-value=0.33 Score=53.05 Aligned_cols=152 Identities=12% Similarity=0.040 Sum_probs=95.2
Q ss_pred CcchhhhHhHHHHHHHHHHHHHHHHH----HHHhhh-----hc----------CCCCC------ccc---cccch-HH-H
Q 013020 277 SLKLRMGIGLLFSTASMTAWAIVEAA----RRSIAI-----NE----------GISDD------LRA---VVQMS-AM-W 326 (451)
Q Consensus 277 s~~~ki~iG~~l~~~s~lv~~~~e~~----~~~~~~-----~~----------g~~~~------~~~---~~~~s-~~-w 326 (451)
+-++-|++|+++.+++.++.++.+.. +.+... ++ +..++ .+. ...-+ +| .
T Consensus 160 HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 239 (735)
T KOG3626|consen 160 HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLL 239 (735)
T ss_pred CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHH
Confidence 55677999999999999998877542 111110 00 00000 011 11222 22 3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHH----HHHHHHHHHHhhhhccc-cccCCCCCCCCCCCC
Q 013020 327 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGL----SAANLVASLIMNAVDDI-TKRGGNGGWIPSNIN 401 (451)
Q Consensus 327 li~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~----aiG~~l~~~l~~~~~~~-s~~~~~~~w~~~~ln 401 (451)
++..-++.|+|+.-+.+.|.+++.+.+-++-..++.|+.+... ++|..+|+++..++.+. ... ...+-+
T Consensus 240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~------~~it~~ 313 (735)
T KOG3626|consen 240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSP------IGITPT 313 (735)
T ss_pred HHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCC------CCCCCC
Confidence 4567799999999999999999999999999999999888665 45666666666666554 110 011222
Q ss_pred CcchhH----HHHHHHHHHHHHHHHHHHHhhhcCccc
Q 013020 402 KGHYDY----YYWLLTALSMANFLYYLACCKAYGPFK 434 (451)
Q Consensus 402 ~~~~~~----~f~~la~l~lv~~~~~~~~~~~y~~~~ 434 (451)
|.+-.- =|.+.++++++..+-++.+-|.+.+..
T Consensus 314 DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~ 350 (735)
T KOG3626|consen 314 DPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQ 350 (735)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence 333222 234667788888887777777776543
No 202
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=93.53 E-value=6.2 Score=42.68 Aligned_cols=86 Identities=9% Similarity=0.049 Sum_probs=53.1
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh
Q 013020 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG 110 (451)
Q Consensus 31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~ 110 (451)
.+...+..|.++.++|.|... .....++|..+. +.|..++.+..+..-+...+++.+...+..+.+|+|.|.
T Consensus 129 ~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~-------k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~ 200 (599)
T PF06609_consen 129 QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPN-------KWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFY 200 (599)
T ss_pred CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhccc-------chhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHH
Confidence 445668889999999987765 345556777642 233333333333322333334444444455679999999
Q ss_pred HHHHHHHHHHHHHH
Q 013020 111 VPAVIMLLSALSFF 124 (451)
Q Consensus 111 i~~i~~~i~li~f~ 124 (451)
+.++...++++..+
T Consensus 201 ~~~i~~~i~~vl~~ 214 (599)
T PF06609_consen 201 IFIIWSGIALVLIF 214 (599)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888766543
No 203
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=93.41 E-value=4 Score=43.26 Aligned_cols=83 Identities=18% Similarity=0.271 Sum_probs=60.4
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeec-cCccchhh
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKVGFG 110 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~-~g~~~~F~ 110 (451)
+...+++|-.+.++|.|+.--.++.+.++.-++ +.|...-+.+.+.+++|.+++..+....++. ++|+..++
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~-------~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~ 213 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPA-------HIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLG 213 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCCh-------hhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHH
Confidence 668899999999999999986666666654432 3577778889999999999996554444443 58998877
Q ss_pred HHHHHHHHHHH
Q 013020 111 VPAVIMLLSAL 121 (451)
Q Consensus 111 i~~i~~~i~li 121 (451)
+..+.-++-.+
T Consensus 214 ~~~i~~~~~~~ 224 (513)
T KOG0254|consen 214 LALIPAVILAL 224 (513)
T ss_pred HHHHHHHHHHH
Confidence 76554444433
No 204
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=93.34 E-value=1.6 Score=44.90 Aligned_cols=108 Identities=12% Similarity=0.031 Sum_probs=73.2
Q ss_pred HHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHH
Q 013020 255 IGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLS 334 (451)
Q Consensus 255 ~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~ 334 (451)
.|+-..+.-++..|.++| +-+.+++++.+++.+..++.... . .....+..+++..-+++
T Consensus 76 ~~ig~~~~G~l~Dr~Grr-------~~l~~~~~~~~~~~~~~~~~~~~--------~------~~~~~~~~~l~~~R~l~ 134 (432)
T PRK10406 76 RPIGGWLFGRIADKHGRK-------KSMLISVCMMCFGSLVIACLPGY--------E------TIGTWAPALLLLARLFQ 134 (432)
T ss_pred HHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHHHHHhhcCCc--------h------hHHHHHHHHHHHHHHHH
Confidence 344444555555654332 23566777777666655543210 0 00013455677788999
Q ss_pred HHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020 335 GLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 335 ~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
|+++-...|....++.+.+|++.||.+++++......|..++..+...+
T Consensus 135 G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 183 (432)
T PRK10406 135 GLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVL 183 (432)
T ss_pred HhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888878877776654443
No 205
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=93.23 E-value=2.2 Score=44.84 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHh
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIM 380 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~ 380 (451)
+.-.++..-++.|+..-+......=|....||++.||.+-.+..+...+|..++..++
T Consensus 115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~ 172 (485)
T KOG0569|consen 115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG 172 (485)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 3444778889999999999999999999999999999999999999999999986654
No 206
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=92.98 E-value=1.9 Score=45.77 Aligned_cols=104 Identities=13% Similarity=0.022 Sum_probs=81.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020 241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 320 (451)
Q Consensus 241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~ 320 (451)
+|+.+...+...+..++..++...+-||. -+.++.++..++.++.++.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~-----------~l~~~~~~~~iG~ii~~~a--------------------- 139 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKK-----------TLLLAVVLFLIGAIIIALA--------------------- 139 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHHHHHHHHHh---------------------
Confidence 57777777777777777777654444432 2556666666666555443
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHH
Q 013020 321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVAS 377 (451)
Q Consensus 321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~ 377 (451)
.++.+++..-++.|+|=-+.+....-+....+|++.||.+..+..+...+|-.++-
T Consensus 140 -~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~ 195 (513)
T KOG0254|consen 140 -PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGY 195 (513)
T ss_pred -hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHH
Confidence 36888999999999999999999999999999999999999999999998888883
No 207
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=92.97 E-value=4.8 Score=42.23 Aligned_cols=84 Identities=10% Similarity=0.069 Sum_probs=69.1
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhH
Q 013020 281 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSI 360 (451)
Q Consensus 281 ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~ 360 (451)
=+.+|+..-.++.++.++... -|++-...+....-.+..|...+++.+++.++-+|.
T Consensus 310 ~i~lGl~~~~~~~~~~af~~~-----------------------~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~ 366 (463)
T KOG2816|consen 310 LISLGLLSEFLQLLLFAFATE-----------------------TWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGK 366 (463)
T ss_pred HhhHHHHHHHHHHHHHHHhcc-----------------------chhhhHHHHHHHhhcchhHHHHhHHHhhcccccccc
Confidence 467888888888888887752 145555666777778899999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhcccc
Q 013020 361 ASTLSGAGLSAANLVASLIMNAVDDIT 387 (451)
Q Consensus 361 ~~g~~~l~~aiG~~l~~~l~~~~~~~s 387 (451)
.+++.....++.+.+++.+.+.+...+
T Consensus 367 v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 367 VFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 999999999999999998877765544
No 208
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=92.78 E-value=4.2 Score=41.02 Aligned_cols=85 Identities=15% Similarity=0.122 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCc
Q 013020 324 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKG 403 (451)
Q Consensus 324 ~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~ 403 (451)
.+|++....+.++......+....+..+..+++.++.+.+.......+|..+++.......+.. +|
T Consensus 97 ~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~------gw-------- 162 (390)
T TIGR02718 97 AGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF------GQ-------- 162 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CH--------
Confidence 4455555566667777777777778888888888888888888877888888886554432211 34
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 013020 404 HYDYYYWLLTALSMANFLYYL 424 (451)
Q Consensus 404 ~~~~~f~~la~l~lv~~~~~~ 424 (451)
..-|+..+++.++..+..+
T Consensus 163 --~~~f~~~a~l~~~~~~~~~ 181 (390)
T TIGR02718 163 --RPAFLLVACVPLASLVCVL 181 (390)
T ss_pred --HHHHHHHHHHHHHHHHHHH
Confidence 3356677777766655543
No 209
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=91.48 E-value=3.2 Score=42.03 Aligned_cols=55 Identities=5% Similarity=-0.098 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020 327 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 327 li~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
.+...++.+++.....|...+++.+..+++ +..+|......++|..+++.+....
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~g~~~g~~~~g~l 156 (396)
T TIGR00882 102 AIVGGLYLGFVFSAGAGAIEAYIEKVSRNS--NFEYGKARMFGCVGWALCASIAGIL 156 (396)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHhhhhc--ccccchhhhhcccHHHHHHHHHhhh
Confidence 455667888888888888888877765543 3444555555566666766666554
No 210
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=91.03 E-value=5.2 Score=35.37 Aligned_cols=61 Identities=11% Similarity=0.081 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
+.+.++|.-++.|+|+.+++...-.+..+.+.++.++...|+++.....+..+|+.+.-.+
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566889999999999999999999999999999999999999988888888877665443
No 211
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=90.89 E-value=0.9 Score=45.99 Aligned_cols=81 Identities=11% Similarity=0.087 Sum_probs=60.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHH
Q 013020 282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 361 (451)
Q Consensus 282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~ 361 (451)
+.+|.+..++++++.+... +...++..-++.|+..-.++ ..-+.+.+.++++.|++.
T Consensus 101 ll~c~~~va~s~ll~~~S~----------------------~F~afv~aR~l~Gi~kgnl~-v~rAiisdV~sek~r~l~ 157 (451)
T KOG2615|consen 101 LLACLIGVALSYLLWALSR----------------------NFAAFVLARFLGGIFKGNLS-VIRAIISDVVSEKYRPLG 157 (451)
T ss_pred HHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHhhhhccCchH-HHHHHHHhhcChhhccce
Confidence 5567777777776655442 12224444667777777776 457889999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhcc
Q 013020 362 STLSGAGLSAANLVASLIMNAVDD 385 (451)
Q Consensus 362 ~g~~~l~~aiG~~l~~~l~~~~~~ 385 (451)
|+....+.++|..+|+++.+....
T Consensus 158 ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 158 MSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred eeeeehhhhcchhhcchhhhHHHh
Confidence 999999999999999998877654
No 212
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=90.08 E-value=3.2 Score=42.11 Aligned_cols=58 Identities=12% Similarity=-0.019 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 327 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 327 li~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
+-..-.+.+++-+...+....++.+..|.+.||..+|+.....+++..+|+.+.+...
T Consensus 355 l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~ 412 (451)
T KOG2615|consen 355 LYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF 412 (451)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence 4445678889999999999999999999999999999999999999999998885554
No 213
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=89.92 E-value=8.8 Score=39.57 Aligned_cols=92 Identities=10% Similarity=0.083 Sum_probs=64.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHH-hHHHHHHHHHHHHHhhhhccccccCCCCCCCCCC
Q 013020 321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLS-GAGLSAANLVASLIMNAVDDITKRGGNGGWIPSN 399 (451)
Q Consensus 321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~-~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ 399 (451)
..+++|+++.-.++++---+.....+-++++..|+++.++...+. .++.++|..+.+.+.+...+.-
T Consensus 309 ~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~------------ 376 (412)
T PF01306_consen 309 ATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI------------ 376 (412)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH------------
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc------------
Confidence 467788888889999988899999999999999999998888775 4777888877666655544311
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 013020 400 INKGHYDYYYWLLTALSMANFLYYLACCK 428 (451)
Q Consensus 400 ln~~~~~~~f~~la~l~lv~~~~~~~~~~ 428 (451)
.....|++++++.++..++=...-+
T Consensus 377 ----G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 377 ----GFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred ----CcHHHHHHHHHHHHHHHHHheeeec
Confidence 1234577888776665554444333
No 214
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.90 E-value=28 Score=36.47 Aligned_cols=165 Identities=12% Similarity=0.018 Sum_probs=95.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCC--CCcccc
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGIS--DDLRAV 319 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~--~~~~~~ 319 (451)
.+..++.+.+-+..-+....+.++.||. ++ +.-..-+.+|.++.-++++..-+. ..++..+. +++...
T Consensus 279 ~~~ai~~~~~g~g~v~~g~~~~~l~~ri-r~---fg~~~~~~~~~~~~~~~~~li~l~------~p~dap~~~t~~~~~~ 348 (461)
T KOG3098|consen 279 YLIAIYSIGIGLGEVIGGLDFSILSKRI-RG---FGRKPTVLIGIIIHLIGFLLIHLS------FPNDAPLRPTDSPPLL 348 (461)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhhh-hh---cccCcchhHHHHHHHHHHHHHhcc------ccccCCCCCCcccccc
Confidence 3455566665555555444444444443 22 222333455555544444332111 11111111 111112
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCC
Q 013020 320 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSN 399 (451)
Q Consensus 320 ~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ 399 (451)
..-+...-..-++++|+++.+.-..-+..+....| +-+..+-.++-+..++++-++.......
T Consensus 349 ~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~~---------------- 411 (461)
T KOG3098|consen 349 FTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPYL---------------- 411 (461)
T ss_pred cccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhhh----------------
Confidence 23344344556799999999999999999999984 4455788888888888887765433221
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCcccCCC
Q 013020 400 INKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV 437 (451)
Q Consensus 400 ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~~~~ 437 (451)
.+..+.+.+.+++.+..++++..+++++..+++.
T Consensus 412 ----~l~~~~l~~~i~~~i~~~~~~~~~~~~~~~~~k~ 445 (461)
T KOG3098|consen 412 ----LLYIYTLGLPIFCVIATTIFFIVAERTQAMEKKL 445 (461)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2345556777888888888888888886555444
No 215
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=89.71 E-value=3.4 Score=42.88 Aligned_cols=83 Identities=24% Similarity=0.270 Sum_probs=53.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhc---ccCchhh
Q 013020 282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYT---ELPKSMS 358 (451)
Q Consensus 282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~---~aP~~~k 358 (451)
+.+|.++.+++.+.++.... ...|........++.++|.++..+..-..+.. +-|++ +
T Consensus 62 ~~i~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~ 122 (433)
T PF03092_consen 62 MIIGWLLGAVSALVLALLPA------------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-R 122 (433)
T ss_pred HHHHHHHHHHHHHHHHhccc------------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-h
Confidence 56677766666665554421 01223333445566777777777776666555 34666 8
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020 359 SIASTLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 359 g~~~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
|-.+...+...++|+.++..+++..
T Consensus 123 g~lqS~~~~~~~~G~lv~~~l~G~l 147 (433)
T PF03092_consen 123 GDLQSFVWGVRSVGSLVGSLLSGPL 147 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 8889888888899999888777554
No 216
>PRK09528 lacY galactoside permease; Reviewed
Probab=89.62 E-value=0.24 Score=50.81 Aligned_cols=84 Identities=11% Similarity=0.065 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHH-HHHHHHHHHHHHhhhhheeeeccCccchhhHH
Q 013020 34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW-YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP 112 (451)
Q Consensus 34 ~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~-fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~ 112 (451)
..+++...+.+++.+...+.....+.+.++++ .+...+.. +.+..++|+.+++.+.+++.+..||+..|.+.
T Consensus 316 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~ 388 (420)
T PRK09528 316 LEVSILKLLHAFEVPFLLVGVFKYITLNFDVR-------LSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLIL 388 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-------ceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Confidence 44555566666777666666666767766532 23334433 55678899999999999999999999999987
Q ss_pred HHHHHHHHHHHH
Q 013020 113 AVIMLLSALSFF 124 (451)
Q Consensus 113 ~i~~~i~li~f~ 124 (451)
++..+++.++.+
T Consensus 389 ~~~~~i~~~~~~ 400 (420)
T PRK09528 389 GGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHH
Confidence 777666655444
No 217
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=89.54 E-value=6.8 Score=42.38 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=74.6
Q ss_pred hccCcCCCCccccCchhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHh
Q 013020 227 SMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSI 306 (451)
Q Consensus 227 ~md~~~~~g~~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~ 306 (451)
+++..++ + .=...|+...+.+..-+..|++.++..-+-||. =+..|.++..++.++.+-.+
T Consensus 69 ~I~~diG-~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~-----------~~i~g~~l~vvG~Iv~atA~------ 129 (599)
T PF06609_consen 69 YINADIG-G-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRY-----------FFIIGSLLGVVGSIVCATAQ------ 129 (599)
T ss_pred HHHHhcC-C-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchH-----------HHHHHHHHHHhHHHHhhcCC------
Confidence 3444554 2 122447777777777777888888765554442 25667777777777665332
Q ss_pred hhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 307 AINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 307 ~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
|+.-++....+.++|--..... ...+.+..|.+.|....++.....-+....++.+...+.
T Consensus 130 ----------------~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~ 190 (599)
T PF06609_consen 130 ----------------NMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA 190 (599)
T ss_pred ----------------cHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence 2222566667777775555543 344778889999988777665554454455666665543
No 218
>PF13347 MFS_2: MFS/sugar transport protein
Probab=89.22 E-value=2.8 Score=43.07 Aligned_cols=126 Identities=13% Similarity=0.130 Sum_probs=80.1
Q ss_pred cccCchhhhhHHHHHHHHHHHHHHHHhhhhhhccCC---CCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 013020 237 EIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGK---PCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGIS 313 (451)
Q Consensus 237 ~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~---~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~ 313 (451)
.+++.... .++...++.|.+..|+.-....| +.| +-..=+.+|.++.++++..+.... .++
T Consensus 33 gl~~~~~g-----~i~~~~~i~dai~dp~~G~~sDr~~tr~G-rrrp~~l~g~i~~~~~~~llf~~~--------p~~-- 96 (428)
T PF13347_consen 33 GLSPALAG-----LILLVGRIWDAITDPLIGYLSDRTRTRWG-RRRPWILIGAILLALSFFLLFSPP--------PAG-- 96 (428)
T ss_pred CCCHHHHH-----HHHHHHHHhhhhcCCcEEEEEeeeccccc-ccceEeehhhHHHHHHHHHhhccc--------cch--
Confidence 45554433 34556677777777765432211 111 111124567787777777665331 001
Q ss_pred CCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccC-chhhhHHHHHHhHHHHHHHHHHHHHhhh
Q 013020 314 DDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-KSMSSIASTLSGAGLSAANLVASLIMNA 382 (451)
Q Consensus 314 ~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP-~~~kg~~~g~~~l~~aiG~~l~~~l~~~ 382 (451)
........|+...|++..++--+....-.+...+.+| ++.|....+.-.+...+|+.+.+.+...
T Consensus 97 ----~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~ 162 (428)
T PF13347_consen 97 ----LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPI 162 (428)
T ss_pred ----hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 0112467888899999999999999999999999998 4688888888778788888655555444
No 219
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=89.12 E-value=5.1 Score=40.33 Aligned_cols=60 Identities=12% Similarity=-0.142 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
+.|.++...++.+++.....|.....+.+..+ .++..+|......++|..+++.+.....
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~--~~~~a~~~~~~~~~lg~~igp~lgg~l~ 152 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTWQK--QIGLDYGKVRLWGSIAFVIGSALTGKLV 152 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHHHh--hccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 45555566677888887777776666554432 3445455555555666666666666543
No 220
>PRK15075 citrate-proton symporter; Provisional
Probab=88.57 E-value=7.4 Score=40.04 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020 327 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 327 li~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
++..-+++|+++....+....++.+..|++.|+..++++.....+|..+++.+....
T Consensus 120 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l 176 (434)
T PRK15075 120 VLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLL 176 (434)
T ss_pred HHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455568899999998888889999999999999999998877666666655554443
No 221
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=88.52 E-value=6.7 Score=39.52 Aligned_cols=60 Identities=15% Similarity=-0.047 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
+.++++..+++++.+.....|.....+.+ +++.++..+|......++|..+++.+.....
T Consensus 93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~ 152 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLI 152 (382)
T ss_pred hHHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677788888887778887777643 3566788899888888899988888766654
No 222
>PRK09669 putative symporter YagG; Provisional
Probab=88.46 E-value=4.3 Score=41.90 Aligned_cols=59 Identities=10% Similarity=-0.074 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhccc-CchhhhHHHHHHhHHHHHHHHHHHHHh
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTEL-PKSMSSIASTLSGAGLSAANLVASLIM 380 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~a-P~~~kg~~~g~~~l~~aiG~~l~~~l~ 380 (451)
...+|....|++.+++-.+..+.-.+.....+ +++.|+...+.-.....+|..+++.+.
T Consensus 107 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~ 166 (444)
T PRK09669 107 GKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIA 166 (444)
T ss_pred hHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888777777777777877766 457788777776666677777766543
No 223
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=88.43 E-value=17 Score=37.37 Aligned_cols=81 Identities=14% Similarity=0.083 Sum_probs=58.8
Q ss_pred HHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccC---ccchhhHHHHHHH
Q 013020 41 GLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG---WKVGFGVPAVIML 117 (451)
Q Consensus 41 ~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g---~~~~F~i~~i~~~ 117 (451)
.++++|-|.|-. --+..+.-|++ +++..+-.++= +-|+|..+...+.+.+....| |+.+-.+..+.++
T Consensus 113 ll~G~~GasFav-~m~~~s~~fP~-------~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~ 183 (417)
T COG2223 113 LLLGLAGASFAV-GMPNASFFFPK-------EKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALA 183 (417)
T ss_pred HHHhcccceehc-ccccccccCCh-------hhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344455444432 33444556664 34566666666 899999999999999999999 9999999999999
Q ss_pred HHHHHHHhcCccE
Q 013020 118 LSALSFFLASPFY 130 (451)
Q Consensus 118 i~li~f~~g~~~~ 130 (451)
++.+.++.+.+-.
T Consensus 184 v~~v~~~~~~~d~ 196 (417)
T COG2223 184 IAAVLAWLGMNDV 196 (417)
T ss_pred HHHHHHHHHhCCC
Confidence 9888888766533
No 224
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=88.11 E-value=5.7 Score=38.05 Aligned_cols=118 Identities=10% Similarity=0.089 Sum_probs=73.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhH
Q 013020 281 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSI 360 (451)
Q Consensus 281 ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~ 360 (451)
-..+|.++..+++......-. |. ..+.++|.+.....+.+.|..+.....+--..+.-|+ .||.
T Consensus 68 ~l~iG~~~~~~GY~~~~l~~~---------~~------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~ 131 (250)
T PF06813_consen 68 VLLIGAVLGFVGYGLLWLAVS---------GR------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGT 131 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---------Cc------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCc
Confidence 356777777777765554421 10 1124555555555677788888777777777788886 6999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 013020 361 ASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG 431 (451)
Q Consensus 361 ~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~ 431 (451)
+.|+---..+++..+=+.+...+. ++ +.+.|..+++....+..++.....|...
T Consensus 132 vvgilk~~~GLSaai~t~i~~~~f------------~~-----~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 132 VVGILKGFFGLSAAIFTQIYSAFF------------GD-----DPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred eehhhhHHHHhHHHHHHHHHHHHc------------CC-----ChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 999988888888776655554433 11 2356677777766655555444444443
No 225
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=88.06 E-value=7.6 Score=40.42 Aligned_cols=124 Identities=14% Similarity=0.065 Sum_probs=66.2
Q ss_pred CCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCc
Q 013020 276 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 355 (451)
Q Consensus 276 ~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~ 355 (451)
.+...|+..++++..+-+++....-. .+ .......+..+..-++.+++..+.-.+.+.++...-|+
T Consensus 72 i~~~~Ri~~~lv~~~~~~~~~~~l~~--------~~------~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~~ 137 (437)
T TIGR00939 72 IPVTVRLLGGLVILLVVVILVMVLVK--------VQ------TSETGFFVTTMASVVIINSGMALLQGSLFGLAGVFPST 137 (437)
T ss_pred cCccchhHHHHHHHHHHHHHHhheee--------ec------CCcchHHHHHHHHHHHHHhhhhhhcccchhhcccCCHH
Confidence 56667898887765555544433211 01 01112444455666788999999998888888865554
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 013020 356 SMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLAC 426 (451)
Q Consensus 356 ~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~ 426 (451)
-+++ ++...+++..++..+.-+.. ....+ +. +..++ ...||.+-+++.++..+.|..+
T Consensus 138 ~~~a-----~~~G~g~aGv~~s~~~ii~~-a~~~~---~~---~~~~~-a~~YF~~a~~v~l~~i~~~~~l 195 (437)
T TIGR00939 138 YSSA-----VMSGQGLAGVLTSLAMILVK-ASGND---SH---GLKKS-ALGYFGTPCVVQLICIVCYLLL 195 (437)
T ss_pred HHHH-----HHhcchhHHHHHHHHHHHHH-HhcCC---cc---chhhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 4443 44445666655554432222 11000 00 12222 2345555556666666666554
No 226
>PRK10429 melibiose:sodium symporter; Provisional
Probab=87.66 E-value=11 Score=39.32 Aligned_cols=57 Identities=14% Similarity=-0.034 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhccc-CchhhhHHHHHHhHHHHHHHHHHHHH
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTEL-PKSMSSIASTLSGAGLSAANLVASLI 379 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~a-P~~~kg~~~g~~~l~~aiG~~l~~~l 379 (451)
..+|....|++..++--+..+.-.++....+ +++.|+...+.-.....+|..+.+.+
T Consensus 105 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~ 162 (473)
T PRK10429 105 QYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGF 162 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999999988 58889888887455556665555443
No 227
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=87.40 E-value=16 Score=37.02 Aligned_cols=116 Identities=16% Similarity=0.223 Sum_probs=81.8
Q ss_pred CCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCc
Q 013020 276 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 355 (451)
Q Consensus 276 ~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~ 355 (451)
+++-+-+..++++.+++.++ |- --+.+-++..-++.+.|-....+--.+++-+.-|+
T Consensus 74 ~g~er~l~~~Llli~~G~~i-------R~----------------~~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk 130 (395)
T COG2807 74 FGEERSLFLALLLIAAGILI-------RS----------------LGGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK 130 (395)
T ss_pred HhhHHHHHHHHHHHHHHHHH-------Hh----------------cccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc
Confidence 46666677777776655432 21 12455577778899999999999999999999999
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 013020 356 SMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 430 (451)
Q Consensus 356 ~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y 430 (451)
+.- .+||+|..+..+|..+++.++..+.... .+| +.. ....+..+++++++++-...|+
T Consensus 131 ~~~-~mtglYs~sl~~~aaLaa~lavpla~~~-----~gW--------~~a--L~~WAl~allAl~~WlPq~~r~ 189 (395)
T COG2807 131 RVG-LMTGLYSTSLGAGAALAAALAVPLAQHS-----GGW--------RGA--LGFWALLALLALLIWLPQALRE 189 (395)
T ss_pred chh-hHHhHHHHHHHHHHHHHhhhhhHHHHhh-----ccH--------HHH--HHHHHHHHHHHHHHHhhhcccc
Confidence 875 9999999999999999888776654321 245 222 2345667777777777665444
No 228
>PRK11462 putative transporter; Provisional
Probab=86.38 E-value=26 Score=36.48 Aligned_cols=57 Identities=9% Similarity=-0.027 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhcccC-chhhhHHHHHHhHHHHHHHHHHHHHh
Q 013020 324 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-KSMSSIASTLSGAGLSAANLVASLIM 380 (451)
Q Consensus 324 ~~wli~~y~l~~igEl~~~p~g~ef~~~~aP-~~~kg~~~g~~~l~~aiG~~l~~~l~ 380 (451)
..|....|++..++-.+....-.++....++ ++.|+..++.-.....+|..+++.+.
T Consensus 109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~ 166 (460)
T PRK11462 109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM 166 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999999888 88999999988888888877776654
No 229
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=85.43 E-value=1.7 Score=45.85 Aligned_cols=87 Identities=24% Similarity=0.323 Sum_probs=73.3
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccC-ccchhh
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFG 110 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g-~~~~F~ 110 (451)
+.+.+|+.=+++++..|+..+..-++.++.-+++ +...+|..|-+.--..+++||++.+.+.+..| .+++|.
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g-------~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~ 451 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPG-------REAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFL 451 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 3444666666899999999999999999988763 45889999999999999999999998888765 789999
Q ss_pred HHHHHHHHHHHHHHh
Q 013020 111 VPAVIMLLSALSFFL 125 (451)
Q Consensus 111 i~~i~~~i~li~f~~ 125 (451)
.-.+.+++++++++.
T Consensus 452 ~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 452 FLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHHhh
Confidence 888888888887753
No 230
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=85.27 E-value=12 Score=38.33 Aligned_cols=81 Identities=21% Similarity=0.158 Sum_probs=53.9
Q ss_pred CCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCc
Q 013020 276 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 355 (451)
Q Consensus 276 ~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~ 355 (451)
.+-..|+.+..+++++++++.++.+ ++++-+..-++.+++--+.-.+-+++.... |+
T Consensus 86 v~y~~Ri~~~~~l~~~g~l~va~~~----------------------~v~~~l~Gv~las~ssg~GE~tfL~lt~~y-~~ 142 (402)
T PF02487_consen 86 VPYWIRILICVALSAAGMLLVAFSP----------------------SVWVRLLGVVLASLSSGLGEVTFLSLTHFY-GK 142 (402)
T ss_pred ccchHHHHHHHHHHHHHHhheeecc----------------------chhHHHHHHHHHhhhhhhhHHHHHHHHHhc-Cc
Confidence 4667799999999999998766542 233444455565555555555566654433 22
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020 356 SMSSIASTLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 356 ~~kg~~~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
...+.|...++.|..+|+......
T Consensus 143 ----~~l~~wssGTG~aGl~Ga~~y~~l 166 (402)
T PF02487_consen 143 ----SSLSAWSSGTGGAGLVGALYYLGL 166 (402)
T ss_pred ----cccccccCCcChhhHHHHHHHHHH
Confidence 346889998999999888766544
No 231
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=84.56 E-value=52 Score=33.82 Aligned_cols=90 Identities=12% Similarity=0.065 Sum_probs=67.2
Q ss_pred CCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCc
Q 013020 276 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 355 (451)
Q Consensus 276 ~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~ 355 (451)
.+..+-|.+|+.+.+++..+..=.. +.-++-..+...++++.|=-+.-.++..+++...|+
T Consensus 75 ~gyk~gi~lgL~l~avg~~lF~pAa-------------------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~ 135 (422)
T COG0738 75 LGYKAGIVLGLLLYAVGAALFWPAA-------------------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKP 135 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhh-------------------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCc
Confidence 3444557888888777765543221 123455567778999999999999999999999999
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 356 SMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 356 ~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
+-.+.=|.+.....++|..+++.+++..-
T Consensus 136 ~~a~~rlnl~q~fn~lGa~~gp~~g~~li 164 (422)
T COG0738 136 ESAAFRLNLAQAFNGLGAILGPLLGSSLI 164 (422)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 88888888888888888888887766543
No 232
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=83.80 E-value=57 Score=33.72 Aligned_cols=87 Identities=18% Similarity=0.266 Sum_probs=63.3
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhh
Q 013020 279 KLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMS 358 (451)
Q Consensus 279 ~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~k 358 (451)
.+-+.+|+++..+..+...+.+. +.. +|.. =++.+++.-=+...+=++..+.+|++..
T Consensus 318 k~vl~~~lvi~~~~~~~~~~~~~-------------------~~~-f~i~--gll~g~s~G~~qA~SRSy~~~lvp~~k~ 375 (438)
T COG2270 318 KPVLMIGLVILSIAALYLIFLEG-------------------ELD-FWIL--GLLVGTSLGGAQASSRSYLARLVPKGKE 375 (438)
T ss_pred ceeehHHHHHHHHHHHHHHHccc-------------------cHH-HHHH--HHHHHHhcchHHHHHHHHHHHhCCCccc
Confidence 34566777777766666555531 122 2222 1555666656666777899999999999
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhhhhcccc
Q 013020 359 SIASTLSGAGLSAANLVASLIMNAVDDIT 387 (451)
Q Consensus 359 g~~~g~~~l~~aiG~~l~~~l~~~~~~~s 387 (451)
+..+|++.++.-.++.+|+.+++.+-..+
T Consensus 376 ~~fFglyaltgra~S~~gp~lv~v~t~iT 404 (438)
T COG2270 376 GRFFGLYALTGRAASFLGPFLVAVITQIT 404 (438)
T ss_pred cceeehhhhhhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998887655
No 233
>PRK09848 glucuronide transporter; Provisional
Probab=80.41 E-value=2.1 Score=44.20 Aligned_cols=91 Identities=18% Similarity=0.213 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCC-cchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCcc-----
Q 013020 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGT-KSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWK----- 106 (451)
Q Consensus 33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~-~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~----- 106 (451)
.+.+++++.+.++|.|...+...++.+|.-|+++.+ ++ ++...+++.+-++.++|..+++.+.+.+-+..||.
T Consensus 319 ~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~-r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~~~ 397 (448)
T PRK09848 319 LPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGV-RIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQ 397 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 456777788899999999999999999887654321 11 34466677899999999999988777665444442
Q ss_pred ---------chh-hHHHHHHHHHHHHHH
Q 013020 107 ---------VGF-GVPAVIMLLSALSFF 124 (451)
Q Consensus 107 ---------~~F-~i~~i~~~i~li~f~ 124 (451)
..+ .+|+++++++++++.
T Consensus 398 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~ 425 (448)
T PRK09848 398 TPEVIMGIRTSIALVPCGFMLLAFVIIW 425 (448)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 456666666666553
No 234
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=79.91 E-value=3.4 Score=36.73 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCccc
Q 013020 405 YDYYYWLLTALSMANFLYYLACCKAYGPFK 434 (451)
Q Consensus 405 ~~~~f~~la~l~lv~~~~~~~~~~~y~~~~ 434 (451)
+..-+.++.+++.+.+++|++-..|.+|++
T Consensus 94 l~R~~~Vl~g~s~l~i~yfvir~~R~r~~~ 123 (163)
T PF06679_consen 94 LKRALYVLVGLSALAILYFVIRTFRLRRRN 123 (163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 445566788888888888877777777643
No 235
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=79.71 E-value=7.8 Score=40.18 Aligned_cols=101 Identities=11% Similarity=0.018 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcch
Q 013020 326 WQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHY 405 (451)
Q Consensus 326 wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~ 405 (451)
++...-.+++..+.-..|+|.|+.-..+=+...+.-.|+-. ..|+..+..+.-..+...+.-+..+|- +-
T Consensus 361 iv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~---~~gq~f~~~~~~~~~~~~~~~~~~~~~-------~~ 430 (480)
T KOG2563|consen 361 IVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLN---LSGQIFGVILVFIMGILAEDLGPPGNT-------FP 430 (480)
T ss_pred ehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEE---eehhHHHHHHHHHHHHHhhccCCCCCC-------cc
Confidence 34444477888889999999999999877777777777643 344444444333322211111101110 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCC
Q 013020 406 DYYYWLLTALSMANFLYYLACCKAYGPFKGRVG 438 (451)
Q Consensus 406 ~~~f~~la~l~lv~~~~~~~~~~~y~~~~~~~~ 438 (451)
.+ +.+...+++.+++-.++...|+|++.+++
T Consensus 431 ~~--i~~~~~~~l~~~lva~~r~~y~R~~~e~~ 461 (480)
T KOG2563|consen 431 AN--IFLTVSALLGAILVAFFRPDYRRLRAEAG 461 (480)
T ss_pred ch--hHhHHHHHHHHHHHhhhhhhHHhHhhhhc
Confidence 12 33555566666666777888888776663
No 236
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=79.47 E-value=1.8 Score=46.07 Aligned_cols=89 Identities=16% Similarity=0.190 Sum_probs=70.7
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccC-ccchhh
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFG 110 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g-~~~~F~ 110 (451)
....+..--++.++..|.+-.+.+..+.|.... ++...+|.+..+..-+++++++-+++++.+..| |...|.
T Consensus 387 ~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~-------~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~ 459 (509)
T KOG2504|consen 387 TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGL-------EKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFY 459 (509)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh-------hhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehh
Confidence 334555555566667777777777677777764 468899999999999999999999999999887 999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 013020 111 VPAVIMLLSALSFFLAS 127 (451)
Q Consensus 111 i~~i~~~i~li~f~~g~ 127 (451)
.+++.++++...++.-.
T Consensus 460 ~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 460 FCGLCFLLSAVLLLILR 476 (509)
T ss_pred hcChHHHHHHHHHHHhH
Confidence 99999999987665543
No 237
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=79.47 E-value=26 Score=32.30 Aligned_cols=98 Identities=14% Similarity=0.008 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHH
Q 013020 246 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAM 325 (451)
Q Consensus 246 ~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~ 325 (451)
.|.+...+..++..+.+++..+|+ .+..++..+++...++....+..-..........+ +-.....+.
T Consensus 107 ~N~l~m~~~~~~~~~~~~~~l~~~-------~~~~~~~~~F~ag~l~~~~~~~~~~~~l~l~~~~~-----~~~~~~~~~ 174 (205)
T PF01891_consen 107 ANALNMGVPPVLVSYLLFRLLRRK-------FPRNIFVAGFLAGFLSVLLAALAVSLVLGLSGTAG-----DYPWMALVQ 174 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----cccHHHHHH
Confidence 566666666666677777766653 23445566666566666555544332222211100 001234444
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhcccCc
Q 013020 326 WQLPYLVLSGLAMAFNMIGQTEFYYTELPK 355 (451)
Q Consensus 326 wli~~y~l~~igEl~~~p~g~ef~~~~aP~ 355 (451)
...+.++++++.|.++.-....+..+.-|+
T Consensus 175 ~~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~ 204 (205)
T PF01891_consen 175 AYLPSHLLLAFPEGFLTGMVVTFLVVYRPE 204 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 567889999999999999999998888775
No 238
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=79.38 E-value=88 Score=32.96 Aligned_cols=50 Identities=12% Similarity=0.027 Sum_probs=40.1
Q ss_pred HHHHHHhh----hhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhcc
Q 013020 336 LAMAFNMI----GQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDD 385 (451)
Q Consensus 336 igEl~~~p----~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~ 385 (451)
.+|++.+. .--+|+++....+.-....++..+...+|..+|+.++..+..
T Consensus 137 ~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 137 MAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666554 445899998888888899999999999999999988777653
No 239
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=78.66 E-value=13 Score=39.17 Aligned_cols=84 Identities=15% Similarity=0.201 Sum_probs=61.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCC
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN 401 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln 401 (451)
-|+++.+..-++.|++..-....+...+.+..+++.|+.++.+ ......+..++..+...+-. +|
T Consensus 169 ~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W------ 233 (521)
T KOG0255|consen 169 PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW------ 233 (521)
T ss_pred CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH------
Confidence 5677788888999999999999999999999999999999999 44454555555544444321 45
Q ss_pred CcchhHHHHHHHHHHHHHHHHHH
Q 013020 402 KGHYDYYYWLLTALSMANFLYYL 424 (451)
Q Consensus 402 ~~~~~~~f~~la~l~lv~~~~~~ 424 (451)
.++++..++.+++..++++
T Consensus 234 ----r~~~~~~~~~~~~~~~~~~ 252 (521)
T KOG0255|consen 234 ----RWLFWIISIPSGLFLLLWF 252 (521)
T ss_pred ----HHHHHHHHHHHHHHHHHHH
Confidence 4566766766666655533
No 240
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=78.01 E-value=26 Score=35.90 Aligned_cols=166 Identities=13% Similarity=0.115 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcc-ccccchHHHHHH
Q 013020 251 LTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLR-AVVQMSAMWQLP 329 (451)
Q Consensus 251 iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~-~~~~~s~~wli~ 329 (451)
=++.+|++|.+.. ||. ++++..=.+....+|.++..+|..+- .|+-+|.. ..+..-.||+.+
T Consensus 80 KllWaPiVDs~y~---k~~-GrrksWvvp~q~llG~~mllLs~~v~-------------~~~g~ng~~p~v~~lt~~f~L 142 (510)
T KOG3574|consen 80 KLLWAPIVDSVYS---KRF-GRRKSWVVPCQYLLGLFMLLLSYLVD-------------RGLGGNGGLPNVVALTLLFLL 142 (510)
T ss_pred HHHHHhhhHHHHH---Hhh-ccccceeeehHHHHHHHHHHHhhCCC-------------cccccCCCCcchHHHHHHHHH
Confidence 4678999997643 222 22222446667888888877776542 12222211 112222223333
Q ss_pred HHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCC-CCCCCc--chh
Q 013020 330 YLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIP-SNINKG--HYD 406 (451)
Q Consensus 330 ~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~-~~ln~~--~~~ 406 (451)
--++-+.=++-+---++.+ ++|++. |-+....-....+|.++|..+.-....++- ++.++- ..+|++ .+.
T Consensus 143 LnflaAtQDIAVDgwALtm---Ls~e~l-gyaST~q~Vg~~~GyfL~~~ifLaL~s~dF---~N~y~rs~P~~~g~ItL~ 215 (510)
T KOG3574|consen 143 LNFLAATQDIAVDGWALTM---LSRENL-GYASTCQSVGQTAGYFLGNVVFLALESPDF---CNTYLRSIPLDQGFITLA 215 (510)
T ss_pred HHHHHhhhhhhhhHHHHHh---cCHhhc-CchhHHHHHHHhhhHHhhcceeeEecChhh---hhHHHhcCcCccceEEhh
Confidence 3333333333332222222 344433 355555555667777777655433332110 001110 012333 255
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCcCCCCC
Q 013020 407 YYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKD 445 (451)
Q Consensus 407 ~~f~~la~l~lv~~~~~~~~~~~y~~~~~~~~~~~~~~~ 445 (451)
.|+++-|.+.+++..+- +.-++|.++.+++|++.
T Consensus 216 gy~~fwg~~~~vat~Lv-----~~~kke~~~~~~~e~~~ 249 (510)
T KOG3574|consen 216 GYLWFWGALFIVATTLV-----ALLKKENDESVDEELEL 249 (510)
T ss_pred HHHHHHHHHHHHHHHHH-----HHhcCCCchhhhhhhhc
Confidence 66676676666665543 22344444444444443
No 241
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=77.88 E-value=0.62 Score=49.85 Aligned_cols=93 Identities=14% Similarity=0.265 Sum_probs=2.3
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeee----------
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD---------- 101 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~---------- 101 (451)
-..++++|-.+.++|..-+- +++-...||+-++ ++-.-+..++|....+|..+|.++++..-+
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~----tLG~tYiDDnv~~---~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~ 212 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLY----TLGITYIDDNVSK---KNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPP 212 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCc----cceeeeecccccc---ccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccc
Confidence 35667777777777776654 4444444444332 344567788999999999999877765321
Q ss_pred -----------cc-CccchhhHHHHHHHHHHHHHHhcCccEe
Q 013020 102 -----------NL-GWKVGFGVPAVIMLLSALSFFLASPFYV 131 (451)
Q Consensus 102 -----------~~-g~~~~F~i~~i~~~i~li~f~~g~~~~~ 131 (451)
.+ .||+||.++++..++..+-++.--|+++
T Consensus 213 ~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp 254 (539)
T PF03137_consen 213 DGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLP 254 (539)
T ss_dssp ------------------------------------------
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 13 4999999999888877776665444443
No 242
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=77.35 E-value=3.1 Score=42.73 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=59.5
Q ss_pred HHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccC------ccchhh
Q 013020 37 YFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG------WKVGFG 110 (451)
Q Consensus 37 ~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g------~~~~F~ 110 (451)
.++..+-++..|.+-.....++.++.+++.. .+-++.|+..+. -+|..+|.++++++.+++| |...|.
T Consensus 305 ~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~----at~Q~l~~~~~~--Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~ 378 (400)
T PF03825_consen 305 LLGQLLHGLTFGLFHAASVRYIDRIAPPELR----ATAQGLYSALSF--GLGGAIGSLIGGWLYDAFGARGMFDWSAVFL 378 (400)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhCCccch----HHHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 3444557788888888888888888765433 345555544433 4889999999999988866 445677
Q ss_pred HHHHHHHHHHHHHHhcC
Q 013020 111 VPAVIMLLSALSFFLAS 127 (451)
Q Consensus 111 i~~i~~~i~li~f~~g~ 127 (451)
++++..++..+.|++..
T Consensus 379 v~a~~~~~~~~~f~~~f 395 (400)
T PF03825_consen 379 VFAVMALVILVLFVILF 395 (400)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 77777777777777643
No 243
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=76.89 E-value=78 Score=31.32 Aligned_cols=82 Identities=9% Similarity=0.152 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHH
Q 013020 331 LVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYW 410 (451)
Q Consensus 331 y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~ 410 (451)
..++|++--++.-.---.+....|+..-|+.-|.......+|-.+.+.+++++.+.+ + ++ ..++.||.
T Consensus 359 m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~---g--~y-------~~le~ffl 426 (459)
T KOG4686|consen 359 MTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD---G--SY-------DNLEAFFL 426 (459)
T ss_pred HHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC---C--ch-------hhHHHHHH
Confidence 345566665555555667788999999999999988888888888888887776432 1 11 13678888
Q ss_pred HHHHHHHHHHHHHH
Q 013020 411 LLTALSMANFLYYL 424 (451)
Q Consensus 411 ~la~l~lv~~~~~~ 424 (451)
..+.+++....+.+
T Consensus 427 ~~~~~aL~svgil~ 440 (459)
T KOG4686|consen 427 IIGLMALTSVGILF 440 (459)
T ss_pred HHHHHHHHHHHHHh
Confidence 88877777665544
No 244
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=76.10 E-value=76 Score=33.32 Aligned_cols=103 Identities=11% Similarity=0.002 Sum_probs=73.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccC-chhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCC
Q 013020 321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-KSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSN 399 (451)
Q Consensus 321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP-~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ 399 (451)
..+..|....|++.++.--++...--++....++ ++.|....+.++....+|+.+...+...+-. ++.+
T Consensus 109 ~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~---------~~g~- 178 (467)
T COG2211 109 TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVK---------LFGG- 178 (467)
T ss_pred CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhCC-
Confidence 4788888889999999999988888888777643 5678899999999999998888776644432 2221
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCcccC
Q 013020 400 INKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKG 435 (451)
Q Consensus 400 ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~~ 435 (451)
+++..-|+....+++++..+.++++.+..+.|-.
T Consensus 179 --~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~ 212 (467)
T COG2211 179 --GDKALGYQGTALVLGVIGVILLLFCFFNVKERVV 212 (467)
T ss_pred --CcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 0112335556667777777777777777655544
No 245
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=74.54 E-value=31 Score=35.48 Aligned_cols=152 Identities=15% Similarity=0.075 Sum_probs=85.8
Q ss_pred CccccCchhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 013020 235 NFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISD 314 (451)
Q Consensus 235 g~~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~ 314 (451)
++...++++-.+..+.++.-+. +.....++..|.+. -+-..+++++..+-.+..++...
T Consensus 43 ~~~LS~~q~~ll~aiPil~Gal-lRl~~g~l~drfGg-------R~~~~~s~~l~~IP~~~~~~a~~------------- 101 (417)
T COG2223 43 DFGLSEGQKGLLVAIPILVGAL-LRLPYGFLTDRFGG-------RKWTILSMLLLLIPCLGLAFAVT------------- 101 (417)
T ss_pred ccCCCHHHHHHHHHHHHHHhHH-HHHHHHhhhcccCc-------hHHHHHHHHHHHHHHHHHHHHcc-------------
Confidence 4667777766666655544322 22223344444332 23345677777777777776642
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCC
Q 013020 315 DLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGG 394 (451)
Q Consensus 315 ~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~ 394 (451)
..|.++++..=++.|++-.- +..++..+..--|++.||+++|++- ...+|..+...+..++...- +
T Consensus 102 ------~~~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~------g 167 (417)
T COG2223 102 ------YPSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF------G 167 (417)
T ss_pred ------CCchHHHHHHHHHHhcccce-ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH------h
Confidence 23334455555666666543 3477888889999999999999987 44444444444333332110 2
Q ss_pred ---CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 013020 395 ---WIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG 431 (451)
Q Consensus 395 ---w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~ 431 (451)
| .+--.+.....++..+.+++.++...
T Consensus 168 ~~~w----------~~~~~i~~~~l~v~~v~~~~~~~d~p 197 (417)
T COG2223 168 FLAW----------RNVAGIYVVALAIAAVLAWLGMNDVP 197 (417)
T ss_pred hHHH----------HHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 2 12223455566666666766665543
No 246
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=72.46 E-value=4.1 Score=34.35 Aligned_cols=32 Identities=6% Similarity=-0.024 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcccCCCCC
Q 013020 408 YYWLLTALSMANFLYYLACCKAYGPFKGRVGT 439 (451)
Q Consensus 408 ~f~~la~l~lv~~~~~~~~~~~y~~~~~~~~~ 439 (451)
.|..++++.++.+++++++.|+-||...+...
T Consensus 70 i~gv~aGvIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS---------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 34455555444445555554444443333333
No 247
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.97 E-value=1.1e+02 Score=30.60 Aligned_cols=104 Identities=12% Similarity=0.132 Sum_probs=63.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccc-----cCCCCCC
Q 013020 321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITK-----RGGNGGW 395 (451)
Q Consensus 321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~-----~~~~~~w 395 (451)
.-|+-.+... +.+++.+...+++.+-|..+.=|.-++++..| .++...+=.++ .+..-.+. .+.-+.+
T Consensus 110 ~hS~afl~L~-F~LAivdc~SnVtFLPFMs~lpp~fL~afFvG-----~GLSaLlPsll-aLaQGtg~~~C~~n~t~~r~ 182 (439)
T KOG4255|consen 110 LHSWAFLSLL-FGLAIVDCTSNVTFLPFMSQLPPAFLNAFFVG-----MGLSALLPSLL-ALAQGTGRLECDLNGTPGRP 182 (439)
T ss_pred cchHHHHHHH-HHHHHHHhhccchhhhhhhhCChHHHHHHHHh-----ccHHHHHHHHH-HHHccCCceeecCCCCCCCC
Confidence 4455555544 67899999999999999998888877765444 44444443332 23322111 0001122
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCccc
Q 013020 396 IPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK 434 (451)
Q Consensus 396 ~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~ 434 (451)
+|.+.. -..||+.+..++..+...|..+-|.-.-.+
T Consensus 183 fP~rFs---~s~FFl~l~~~~~~alaAF~vL~r~~~~~~ 218 (439)
T KOG4255|consen 183 FPPRFS---VSTFFLALFAFTCAALAAFFVLYRLGAHWP 218 (439)
T ss_pred CCCCcc---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 443222 347899998888888888777666554433
No 248
>PRK07331 cobalt transport protein CbiM; Provisional
Probab=71.67 E-value=42 Score=33.43 Aligned_cols=105 Identities=10% Similarity=-0.009 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhh-----hcCCCCCccccc
Q 013020 246 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAI-----NEGISDDLRAVV 320 (451)
Q Consensus 246 ~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~-----~~g~~~~~~~~~ 320 (451)
.|.+..-+..|+..+++|+..+|+. ++....+..+++-..++....++.-.......+ ..|... ....
T Consensus 108 aN~l~ma~~~~~v~y~iyr~~~~~~-----~~~~~~~~~~f~gg~l~i~~~al~~al~l~~~~~~~~~~~g~~~--~~~~ 180 (322)
T PRK07331 108 ANCFNMAFIMPFVGYYIYKFIKKWT-----KSKKGEYIGAFIGGYIGINVAALFAAIEFGLQPLLFKDASGLPL--YSPY 180 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCccc--cccc
Confidence 4555444445666777787776532 233334444555555555555444221111100 011000 0011
Q ss_pred c--chHHHHHHHHHHH-HHHHHHHhhhhHHHhhcccCchh
Q 013020 321 Q--MSAMWQLPYLVLS-GLAMAFNMIGQTEFYYTELPKSM 357 (451)
Q Consensus 321 ~--~s~~wli~~y~l~-~igEl~~~p~g~ef~~~~aP~~~ 357 (451)
+ +++.-+.+.++.+ ++.|-++......|+.+..|+-+
T Consensus 181 ~~~~~~~~m~~~hl~i~gi~Eg~iT~~v~~~l~~~~p~ll 220 (322)
T PRK07331 181 PLSVTIPAMLLPHLLVAGILEGIFTALVFSFIKRVSPGIL 220 (322)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHh
Confidence 2 2333456667776 99999999999999999888765
No 249
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=71.03 E-value=0.14 Score=52.82 Aligned_cols=62 Identities=19% Similarity=0.050 Sum_probs=54.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
.++++++..-++.|++=-...+....++...+|++.|+.+.+++.....+|..++..+...+
T Consensus 100 ~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 100 NNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 36777888889999999999999999999999999999999999999999988887665444
No 250
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=65.94 E-value=1.2e+02 Score=31.58 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhH---HHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 327 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSI---ASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 327 li~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~---~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
.+...++.+++.....+.+-.++.+..| +.++. .+...+...++|..+++.+++...
T Consensus 123 ~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~ 182 (468)
T TIGR00788 123 AAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL 182 (468)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 3335788899999999999999988877 33332 444444445567777666665543
No 251
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=65.49 E-value=12 Score=36.77 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=57.3
Q ss_pred HHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccC---ccchhhHHH
Q 013020 37 YFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG---WKVGFGVPA 113 (451)
Q Consensus 37 ~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g---~~~~F~i~~ 113 (451)
|+++.++++.....--..-+.++...+| +++.++|...|-.-|+|-.+.+++++.+.++-| |-=+|.+..
T Consensus 356 y~~m~~lGLsysllAcslWP~va~~vpE-------~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~ 428 (459)
T KOG4686|consen 356 YTSMTFLGLSYSLLACSLWPCVASLVPE-------EQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII 428 (459)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhCCH-------HHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence 6677777777666555566777766665 478999999999999999999999999998755 444565555
Q ss_pred HHHHHHHH
Q 013020 114 VIMLLSAL 121 (451)
Q Consensus 114 i~~~i~li 121 (451)
..|.+..+
T Consensus 429 ~~~aL~sv 436 (459)
T KOG4686|consen 429 GLMALTSV 436 (459)
T ss_pred HHHHHHHH
Confidence 55544433
No 252
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=63.46 E-value=92 Score=32.73 Aligned_cols=102 Identities=11% Similarity=-0.022 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHH
Q 013020 246 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAM 325 (451)
Q Consensus 246 ~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~ 325 (451)
.-.+..++..|++..+..+..|| .++..-.+|.++..+..++.. |
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk--------~~L~~~~~~~~l~~~~~~~~~---------------------------~ 114 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRK--------VVLLLPLFGTILPALCLLFQG---------------------------Y 114 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhh--------hhHHHHHHHHHHhHHHHHHHH---------------------------H
Confidence 34556677788888876555443 334444445555444443321 4
Q ss_pred HHHH-HHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 326 WQLP-YLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 326 wli~-~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
|.+. ..+.- +-..+...+++++++.+.++-|....|+...+.+.+..+++.+.+...
T Consensus 115 ~~~~~~~l~g--~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~ 172 (463)
T KOG2816|consen 115 WFFLLLGLSG--GFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLV 172 (463)
T ss_pred HHhhhccccc--chhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4433 22222 233455678889999999999999999999888888888877776654
No 253
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=62.41 E-value=22 Score=36.38 Aligned_cols=110 Identities=9% Similarity=0.044 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHH-HHHHHHHHhhhhccccccCCCCCCCCCC---
Q 013020 324 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSA-ANLVASLIMNAVDDITKRGGNGGWIPSN--- 399 (451)
Q Consensus 324 ~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~ai-G~~l~~~l~~~~~~~s~~~~~~~w~~~~--- 399 (451)
....+.+|.+.+..---.++++++|.++.||+...|++|.+-.-...+ |+.-+.++..+.|..+.++=... .+.
T Consensus 369 ~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv~~C~~~--t~~~~c 446 (510)
T KOG3574|consen 369 YILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTVKQCVLA--TNKVTC 446 (510)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCceeecccc--ccceee
Confidence 334566889999888889999999999999999999999986644444 44555555555554432210000 010
Q ss_pred -----------CCCc---chhHHHHHHHHHHHHHHHHHHHHhhhcCcccC
Q 013020 400 -----------INKG---HYDYYYWLLTALSMANFLYYLACCKAYGPFKG 435 (451)
Q Consensus 400 -----------ln~~---~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~~ 435 (451)
+... ..|-||..-.+..++..+.+.++.++.++..+
T Consensus 447 ~~~~~~~~c~~l~gtc~~~~DGYyi~s~ici~ig~i~~~~~~~ki~~Lq~ 496 (510)
T KOG3574|consen 447 ITKAFPQLCLALGGTCLIARDGYYITSIICIVIGFIWFGLLKPKIKYLQK 496 (510)
T ss_pred ecchHHHHHHHhcCEEEEEecceEEeeehhhhHHHHHHHHHHHHHHHHHh
Confidence 0000 13456665555555666666677777766543
No 254
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=61.75 E-value=1.5e+02 Score=28.39 Aligned_cols=37 Identities=5% Similarity=0.168 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcc---cCchhh
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTE---LPKSMS 358 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~---aP~~~k 358 (451)
++-+.-....+++++|=+|-.|..+-+..+. .|+.++
T Consensus 151 i~~Y~~fv~~~~l~fGl~FelPli~~~L~~~giv~~~~l~ 190 (258)
T PRK10921 151 IASYLSFVMALFMAFGVSFEVPVAIVLLCWMGVTTPEDLR 190 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 3333333344667788788888777777763 455544
No 255
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=58.93 E-value=2.2e+02 Score=29.36 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
-|++|+-...++-|++-.. -+.-++++|...|++.=-.+.+..-.+.-+|..+|+.++.+.-
T Consensus 92 ~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 92 TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555444555555443 3456688999888776656776655666666677766666654
No 256
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=57.06 E-value=2e+02 Score=29.60 Aligned_cols=82 Identities=20% Similarity=0.130 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchh
Q 013020 327 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYD 406 (451)
Q Consensus 327 li~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~ 406 (451)
.+..-++++.+.....-.-+-.+...-|+-.++++.| .+++..+.+.+.-+..... +|-+++..
T Consensus 120 t~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G-----~a~aG~l~Sl~~i~tka~~----------~~~~~sA~- 183 (406)
T KOG1479|consen 120 TLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSG-----QALAGTLTSLLRILTKAAF----------SDSRTSAL- 183 (406)
T ss_pred HHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhc-----chhHhHHHHHHHHHHHHhc----------CCCCceee-
Confidence 4455677788887777666777776666666666655 3444444443332222111 12222222
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013020 407 YYYWLLTALSMANFLYYL 424 (451)
Q Consensus 407 ~~f~~la~l~lv~~~~~~ 424 (451)
.||.+=.++.++..+.|.
T Consensus 184 ~yF~~s~~~~llC~i~y~ 201 (406)
T KOG1479|consen 184 IYFITSTVILLLCFVLYL 201 (406)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 455555556666666666
No 257
>PTZ00207 hypothetical protein; Provisional
Probab=55.15 E-value=18 Score=39.16 Aligned_cols=84 Identities=13% Similarity=0.142 Sum_probs=58.3
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHH-HhhhhheeeeccCccchh
Q 013020 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIV-AVTCIVYIQDNLGWKVGF 109 (451)
Q Consensus 31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i-~~~~~~~i~~~~g~~~~F 109 (451)
.+.+.+++...+.++|.|.+.+.......+.|+ ++|.....+...+.++|+.+ +++...++.+ +|+..|
T Consensus 118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp--------~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~f 187 (591)
T PTZ00207 118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP--------SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYF 187 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHH
Confidence 356778888888999999888888888888875 25788999999999999975 5655566554 344444
Q ss_pred hHH-HHHHHHHHHHHH
Q 013020 110 GVP-AVIMLLSALSFF 124 (451)
Q Consensus 110 ~i~-~i~~~i~li~f~ 124 (451)
.+. .+..+++++.+.
T Consensus 188 l~l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 188 FFLMSFALVVGILAIV 203 (591)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 443 334444444333
No 258
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=54.72 E-value=16 Score=34.86 Aligned_cols=7 Identities=0% Similarity=0.140 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 013020 371 AANLVAS 377 (451)
Q Consensus 371 iG~~l~~ 377 (451)
+|..+|.
T Consensus 21 iGg~~G~ 27 (248)
T PF11368_consen 21 IGGFIGF 27 (248)
T ss_pred HHHHHHH
Confidence 4444433
No 259
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=54.70 E-value=2.2e+02 Score=29.58 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=29.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHH
Q 013020 284 IGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEF 348 (451)
Q Consensus 284 iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef 348 (451)
-|+++.++.|+...+.|...+. ++++ .||++.|++-++.+...+++
T Consensus 300 YgiLFI~LTF~~fflfE~~~~~---------------~iHp----iQY~LVGlAl~lFYlLLLSl 345 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELLSKL---------------RIHP----IQYLLVGLALVLFYLLLLSL 345 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---------------cccH----HHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999975321 2333 26666666665555544443
No 260
>KOG4026 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.52 E-value=1.8e+02 Score=26.74 Aligned_cols=114 Identities=11% Similarity=0.154 Sum_probs=65.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhHHHhh---cccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCC
Q 013020 320 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYY---TELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWI 396 (451)
Q Consensus 320 ~~~s~~wli~~y~l~~igEl~~~p~g~ef~~---~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~ 396 (451)
.+.+.|++.-.++++++.-++.....+.+.. +.+--++.|.+++++.+..-+|..+=+ . ||=
T Consensus 72 ips~~~~~a~f~vlla~~Lill~i~~~~l~~~c~~~si~~~cg~~q~~a~l~milGc~lyP-----~----------GW~ 136 (207)
T KOG4026|consen 72 IPSNEFKLAAFFVLLAFVLILLLIVFLALLGCCRSKSIFNMCGWMQGIAGLCMILGCALYP-----D----------GWD 136 (207)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHhcC-----C----------ccC
Confidence 3556666666777777777765544444433 344556777777776655444444321 1 342
Q ss_pred CC-------------CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCcCCCCCCccc
Q 013020 397 PS-------------NINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEE 449 (451)
Q Consensus 397 ~~-------------~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 449 (451)
++ ++.+...-+-|. +|++.++.+++.-.++-....|+.+.-.+++-++|-++
T Consensus 137 s~~vr~~CG~~a~ky~lG~CsIgWaY~-lAIig~~daliL~~lsf~l~~k~~~~~p~~~~~~g~~~ 201 (207)
T KOG4026|consen 137 SPEVRRMCGAKAGKYYLGDCSIGWAYY-LAIIGILDALILAFLSFVLGTKQQRLLPEESKAEGKGL 201 (207)
T ss_pred CHHHHHHhccccCCccCccccccHHHH-HHHHHHHHHHHHHHHHHHhccCCCCcccchhhhcCCce
Confidence 21 344444444443 77777777777777777777666666555555555444
No 261
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.93 E-value=58 Score=26.79 Aligned_cols=32 Identities=6% Similarity=0.007 Sum_probs=21.8
Q ss_pred cccCchhhhHHHHHHhHHHHHHHHHHHHHhhh
Q 013020 351 TELPKSMSSIASTLSGAGLSAANLVASLIMNA 382 (451)
Q Consensus 351 ~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~ 382 (451)
+.+-++.|+..+++-..+--++..+.+.+.++
T Consensus 33 ~~~a~s~k~~~~a~klssefIsGilVGa~iG~ 64 (116)
T COG5336 33 KSSAESIKGYAQAFKLSSEFISGILVGAGIGW 64 (116)
T ss_pred cccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888777767777666655444
No 262
>PRK11715 inner membrane protein; Provisional
Probab=52.22 E-value=2.3e+02 Score=29.49 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=30.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHH
Q 013020 284 IGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEF 348 (451)
Q Consensus 284 iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef 348 (451)
-|+++.+++|+...+.|...+ .++++ .||++.|++-++.+-..+++
T Consensus 306 YgiLFI~LTF~~fFlfE~~~~---------------~~iHp----iQYlLVGlAl~lFYLLLLSl 351 (436)
T PRK11715 306 YAILFIALTFAAFFLFELLKK---------------LRIHP----VQYLLVGLALVLFYLLLLSL 351 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---------------ceecH----HHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999997421 12333 26777777666666555544
No 263
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=51.11 E-value=3e+02 Score=29.19 Aligned_cols=54 Identities=11% Similarity=0.037 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhh----HHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhcc
Q 013020 332 VLSGLAMAFNMIGQ----TEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDD 385 (451)
Q Consensus 332 ~l~~igEl~~~p~g----~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~ 385 (451)
++.-.+|+.-+..- .+|+..+.-.+.-....+++.+...++.++++.+.....+
T Consensus 152 ~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 152 LFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456787766544 4888888888999999999999999999999988777654
No 264
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=50.06 E-value=2.3e+02 Score=26.76 Aligned_cols=36 Identities=11% Similarity=-0.119 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHH-HHHHHHHhhhhHHHhhcccCchhh
Q 013020 323 SAMWQLPYLVLS-GLAMAFNMIGQTEFYYTELPKSMS 358 (451)
Q Consensus 323 s~~wli~~y~l~-~igEl~~~p~g~ef~~~~aP~~~k 358 (451)
+.--+.+..+.+ ++.|-++.....+++.+..|+.+-
T Consensus 182 ~~~~~~~~h~~i~~i~Eg~iT~~~~~~l~~~~~~~~l 218 (230)
T PRK11909 182 SIPAMLFAHLTVAGIVEAIVTGLVVYYLQKADEENLL 218 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHh
Confidence 445566777887 999999999999999998666553
No 265
>PF14007 YtpI: YtpI-like protein
Probab=49.27 E-value=20 Score=28.49 Aligned_cols=53 Identities=15% Similarity=0.173 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhhhheeeeccCccchhhHHHHHHHHHHHHHHhcCccEeecCC
Q 013020 82 YVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKA 135 (451)
Q Consensus 82 Y~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~i~~~i~li~f~~g~~~~~~~~p 135 (451)
=+.|.+|.++.....--.-- .+=...+.++++.+++|+...+.|.|.|+|..|
T Consensus 34 ka~ialG~fl~~fgiNQ~~~-~~st~~~iV~~ifl~lG~~n~~~G~r~y~hy~p 86 (89)
T PF14007_consen 34 KANIALGIFLILFGINQMFL-FGSTVRLIVGAIFLVLGLFNLFAGIRAYRHYRP 86 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence 45577788776543221111 223688899999999999999999988877655
No 266
>PRK08319 cobalt transport protein CbiM; Validated
Probab=48.18 E-value=2.2e+02 Score=26.62 Aligned_cols=32 Identities=6% Similarity=-0.033 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhcccCchhhh
Q 013020 328 LPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 359 (451)
Q Consensus 328 i~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg 359 (451)
.++++.+++.|.++.-....+..+.-|+=++.
T Consensus 183 ~~~~l~l~~~Eg~itg~~v~~l~~~rP~~l~t 214 (224)
T PRK08319 183 AVTQIPLAIAEGLLTVLIFNYLTKYRPDLLVK 214 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHhh
Confidence 46668899999999999999999999987753
No 267
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=47.70 E-value=74 Score=33.57 Aligned_cols=121 Identities=13% Similarity=0.057 Sum_probs=83.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchh--h
Q 013020 281 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM--S 358 (451)
Q Consensus 281 ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~--k 358 (451)
-+.+|-++.+++.++++.-+. .+...+.....++++|--++-|...++..++=|++- |
T Consensus 94 tI~lGail~~iGh~~L~~~~~--------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dprr 153 (498)
T COG3104 94 TIVLGAILMAIGHLVLAISSV--------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRR 153 (498)
T ss_pred HHHHHHHHHHHHHHHHhcccc--------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCccc
Confidence 477888888888888765420 123335566677778888888888887777533221 5
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCcccCCC
Q 013020 359 SIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV 437 (451)
Q Consensus 359 g~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~~~~ 437 (451)
--..++++....+|+++++.+...+.. | .+ ...-|.+-++-+...+++|++..|+++......
T Consensus 154 D~gFt~fY~~iNiGsl~~p~i~~~~~~---------~----~g---~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~ 216 (498)
T COG3104 154 DGGFTLFYMGINIGSLIAPIITGLLAI---------N----YG---WHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVP 216 (498)
T ss_pred CCCccEEEEEeehHHHHHHHHHHHHHH---------h----hC---HHHHHHHHHHHHHHHHHHHHHccchhcCCCCCC
Confidence 566777788888999999998877652 1 11 345577777788888888888888876555333
No 268
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=46.03 E-value=23 Score=27.22 Aligned_cols=55 Identities=18% Similarity=0.252 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHHHHHHHHHHHHHhcCccEee
Q 013020 75 QSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVK 132 (451)
Q Consensus 75 ~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~i~~~i~li~f~~g~~~~~~ 132 (451)
+..-.++...+-+++++|. ++||+.+++ +..+.+-+++.++++++.+=-.+.|++
T Consensus 7 ~~ae~l~~~il~~~~iisf-i~Gy~~q~~--~~~~~~~~~g~~~~~lv~vP~Wp~y~r 61 (76)
T PF06645_consen 7 RLAEKLMQYILIISAIISF-IVGYITQSF--SYTFYIYGAGVVLTLLVVVPPWPFYNR 61 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHhheeCCcHhhcC
Confidence 3355667788888888886 668887765 466777777777887777665666654
No 269
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=45.00 E-value=47 Score=34.89 Aligned_cols=149 Identities=14% Similarity=0.077 Sum_probs=93.7
Q ss_pred cccCchhhhhHHHHH---HHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 013020 237 EIPSGSFNIFAILTL---TIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGIS 313 (451)
Q Consensus 237 ~ip~~~l~~~n~l~i---ii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~ 313 (451)
+.|+...+.+|...- ++-+-++.++=..+-||+ -++.-+++..+|-++.+.- .+
T Consensus 80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~-----------vYG~~liImIi~t~~~~~s----------~~-- 136 (538)
T KOG0252|consen 80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK-----------VYGKELIIMIICSALSGLS----------VG-- 136 (538)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh-----------hhhHHHHHHHHHHHHhccC----------CC--
Confidence 588888888887753 344444444433333321 2455556665555432221 11
Q ss_pred CCccccccc-hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCC
Q 013020 314 DDLRAVVQM-SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGN 392 (451)
Q Consensus 314 ~~~~~~~~~-s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~ 392 (451)
...+. =++|+...-+++|+|=-==+|.+-...+..|-++-||..+++.+...++|-..|+.+..++-..=+
T Consensus 137 ----~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe---- 208 (538)
T KOG0252|consen 137 ----TTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFE---- 208 (538)
T ss_pred ----CCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHh----
Confidence 11232 345777888999999888899999999999999999999999999888888777765544432211
Q ss_pred CCCCCCCCCC----cchhHHHHHHHHHHHHHHH
Q 013020 393 GGWIPSNINK----GHYDYYYWLLTALSMANFL 421 (451)
Q Consensus 393 ~~w~~~~ln~----~~~~~~f~~la~l~lv~~~ 421 (451)
..+|+ .|+|..+-+.-++.++-++
T Consensus 209 -----~~~~~~~~~~~ld~vWRl~~glg~vpa~ 236 (538)
T KOG0252|consen 209 -----KIFNGPSTYPHLDGVWRIIFGLGAVPAL 236 (538)
T ss_pred -----ccCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 11232 2688887766555555444
No 270
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=44.90 E-value=30 Score=36.27 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=45.9
Q ss_pred hcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 013020 350 YTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACC 427 (451)
Q Consensus 350 ~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~ 427 (451)
....|.+.||+.-|++-.+.-+|..++........+. + .|.++. .-+.++++++.+++..++.+++-
T Consensus 432 aE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~-------~-yp~~~g---~~~v~~i~~~~~~~gi~~T~l~p 498 (538)
T KOG0252|consen 432 AEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDH-------N-YPPNIG---VRNVFIILAGCMLLGILFTLLIP 498 (538)
T ss_pred hhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhc-------c-CCcccc---chHHHHHHHHHHHHhHheeEEee
Confidence 3478999999999999888888888887655443210 1 222332 34567888888888777665554
No 271
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=44.79 E-value=1.3e+02 Score=28.94 Aligned_cols=32 Identities=9% Similarity=-0.014 Sum_probs=23.6
Q ss_pred ccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020 352 ELPKSMSSIASTLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 352 ~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
.+.+-+|...+|+-++..+..|.+.+...+-+
T Consensus 71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~grf 102 (254)
T PF07857_consen 71 LVVPIIKTIGLGLGMLIWGSVNCLTGWASGRF 102 (254)
T ss_pred eehhHhhhhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 45567888888888888888888877766544
No 272
>TIGR00123 cbiM cobalamin biosynthesis protein CbiM. In Methanobacterium thermoautotrophicum, Archaeoglobus fulgidus, and Methanococcus jannaschii, a second homolog of cbiM is also found. These cbiM-related proteins appear to represent a distinct but less well-conserved orthologous group. Still more distant homologs include sll0383 from Synechocystis sp. and HI1621 from Haemophilus influenzae; the latter protein, from a species that does not synthesize cobalamin, is the most divergent member of the group. The functions of and relationships among the set of proteins homologous to cbiM have not been determined.
Probab=42.12 E-value=2.9e+02 Score=25.70 Aligned_cols=33 Identities=9% Similarity=-0.054 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhcccCchh
Q 013020 325 MWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM 357 (451)
Q Consensus 325 ~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~ 357 (451)
....+.++.+++.|-++......|..+..|+-.
T Consensus 180 ~~~~~~h~~~~i~Eg~iT~~~~~~l~~~~p~~l 212 (214)
T TIGR00123 180 GIFAYTQVPLAIAEGLLTVMIYDYITKLRPDTL 212 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhh
Confidence 344456678899999999999999999998754
No 273
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=40.92 E-value=4.4e+02 Score=27.43 Aligned_cols=65 Identities=17% Similarity=0.120 Sum_probs=47.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhcc
Q 013020 321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDD 385 (451)
Q Consensus 321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~ 385 (451)
.+|..-++...++-=+|=-....+....+=+..|++.||...|.-.....+-..+.-.++-.+.+
T Consensus 353 ~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~ 417 (432)
T PF06963_consen 353 SISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPR 417 (432)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 45666666666666666666666667777778999999999999888888888777666655543
No 274
>PRK06265 cobalt transport protein CbiM; Validated
Probab=40.83 E-value=2.9e+02 Score=25.30 Aligned_cols=95 Identities=11% Similarity=-0.057 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHH
Q 013020 246 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAM 325 (451)
Q Consensus 246 ~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~ 325 (451)
.|.+...+-.++...+.++..||. + ..+...|++-..++....++.-......+ | ..+....
T Consensus 102 ~N~l~m~~p~~~~~~~~~~~~~~~------~--~~~~~~~f~~~~l~v~~~~l~~~~~l~l~---~-------~~~~~~~ 163 (199)
T PRK06265 102 VNTLNMALPAVLAGYLFRKLLRRT------P--PPRGLAAFLAGALAVFLAALLCALELALS---G-------GFPFVPA 163 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc------c--chHHHHHHHHHHHHHHHHHHHHHHHHHHc---c-------cccHHHH
Confidence 344444433444444444444431 2 24566677777777766655532211110 0 0122222
Q ss_pred H--HHHHHHHHHHHHHHHhhhhHHHhhcccCchhh
Q 013020 326 W--QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMS 358 (451)
Q Consensus 326 w--li~~y~l~~igEl~~~p~g~ef~~~~aP~~~k 358 (451)
+ .++.++.+++.|.++.-....+..+.-|+-.+
T Consensus 164 ~~~~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~~l~ 198 (199)
T PRK06265 164 AKLLGLAHLPLMVIEGIITAFAVSFLARVRPELLK 198 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcc
Confidence 2 22455667777999999999999998887554
No 275
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=39.01 E-value=1.2e+02 Score=32.19 Aligned_cols=69 Identities=14% Similarity=0.046 Sum_probs=51.3
Q ss_pred ccchHHH-HHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHH-HHhhhhccccc
Q 013020 320 VQMSAMW-QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVAS-LIMNAVDDITK 388 (451)
Q Consensus 320 ~~~s~~w-li~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~-~l~~~~~~~s~ 388 (451)
.+.+.+. .|.+|++.++.--..++..++|.++.|.+..-|++|.+..-.+.+|.---. ++-.++|..|.
T Consensus 400 v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~ 470 (544)
T PF13000_consen 400 VPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTV 470 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhccc
Confidence 3444444 357999999999999999999999999999999999987765666553332 33445555543
No 276
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=38.74 E-value=2.5e+02 Score=28.97 Aligned_cols=25 Identities=12% Similarity=-0.126 Sum_probs=19.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhh
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLPLA 266 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~pl~ 266 (451)
.+-+.|+++-+++.|++..+..++.
T Consensus 47 ~i~s~~~~~~l~~qp~~G~i~Dklg 71 (412)
T PF01306_consen 47 IIFSAGSLFALLAQPVYGFISDKLG 71 (412)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhHHHhcchhh
Confidence 4567888899999999988765553
No 277
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=38.32 E-value=54 Score=23.05 Aligned_cols=16 Identities=25% Similarity=0.058 Sum_probs=10.8
Q ss_pred HHHHHhhhcCcccCCC
Q 013020 422 YYLACCKAYGPFKGRV 437 (451)
Q Consensus 422 ~~~~~~~~y~~~~~~~ 437 (451)
...-.+|+|.+|.+-+
T Consensus 19 ~I~~~~K~ygYkht~d 34 (50)
T PF12606_consen 19 SICTTLKAYGYKHTVD 34 (50)
T ss_pred HHHHHhhccccccccC
Confidence 3346778888877555
No 278
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=37.97 E-value=1e+02 Score=31.68 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
|+|..+...+..|+-.-..++-....+.++.|++.|-+.||.-..+.++|..+++.++-..+
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55555567788888888999999999999999999999999999999999999998876654
No 279
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=36.98 E-value=3.4e+02 Score=27.18 Aligned_cols=42 Identities=10% Similarity=0.228 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhhh------heeeeccCccchhhHHHHHHHHHHHHH
Q 013020 81 YYVFVSASSIVAVTCI------VYIQDNLGWKVGFGVPAVIMLLSALSF 123 (451)
Q Consensus 81 fY~~iNiGa~i~~~~~------~~i~~~~g~~~~F~i~~i~~~i~li~f 123 (451)
++..+-+|-+++...+ .++.++ |+...+.-....+++-.++|
T Consensus 11 ~~~~~~lgQ~lsl~~~~t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy 58 (334)
T PF06027_consen 11 FWIVLLLGQVLSLCITGTGTFSSLLANK-GVNIPTFQSFFNYVLLALVY 58 (334)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhc-CccCcHHHHHHHHHHHHHHH
Confidence 3455666666665433 345555 77777776666665555544
No 280
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=35.99 E-value=1.6e+02 Score=24.52 Aligned_cols=64 Identities=13% Similarity=0.045 Sum_probs=41.2
Q ss_pred chhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCc
Q 013020 355 KSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGP 432 (451)
Q Consensus 355 ~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~ 432 (451)
+..|+.+.++.++..+..-.+.+.+. +.+.+. ++.. -.+.++++|+++++-++....++...-|
T Consensus 39 ~pwK~I~la~~Lli~G~~li~~g~l~-~~~~i~-~~~~------------~~~~llilG~L~fIPG~Y~~~i~y~a~r 102 (115)
T PF05915_consen 39 IPWKSIALAVFLLIFGTVLIIIGLLL-FFGHID-GDRD------------RGWALLILGILCFIPGFYHTRIAYYAWR 102 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccC-CCCc------------ccchHHHHHHHHHhccHHHHHHHHHHHc
Confidence 34899999998888877766665544 222221 1111 2246789999999999887766655433
No 281
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=35.36 E-value=12 Score=36.72 Aligned_cols=81 Identities=17% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHH
Q 013020 332 VLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWL 411 (451)
Q Consensus 332 ~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~ 411 (451)
++++++-.+.-...+.++...-|+-.++++.| .+++..+...+. + .+ .+..++.+++ ...||.+
T Consensus 5 ~~~~~~~~~~q~s~~glas~~p~~y~~a~~~G-----q~~aGv~~s~l~-i---i~------~~~~~~~~~~-a~~yF~~ 68 (309)
T PF01733_consen 5 ALIGFANAVLQSSLFGLASLFPPKYTQAVMIG-----QGLAGVIVSLLR-I---IT------KASGSDVKTS-AFIYFII 68 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEHhhhHHHhccHHHHHhcCCHHHHHHHHhh-----ccHHHHHHHHHH-H---HH------HHhhhccchh-hhhHHHH
Confidence 45566666667777778877666555544444 444444433222 2 22 1222232323 2244554
Q ss_pred HHHHHHHHHHHHHHHhh
Q 013020 412 LTALSMANFLYYLACCK 428 (451)
Q Consensus 412 la~l~lv~~~~~~~~~~ 428 (451)
-.++.++..+.|..+.|
T Consensus 69 a~~i~i~~~~~~~~l~~ 85 (309)
T PF01733_consen 69 AVLIVILCIILYFILPR 85 (309)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44555556566654444
No 282
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=35.32 E-value=43 Score=32.98 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=22.3
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 013020 401 NKGHYDYYYWLLTALSMANFLYYLACCKAY 430 (451)
Q Consensus 401 n~~~~~~~f~~la~l~lv~~~~~~~~~~~y 430 (451)
+...++.++.++.++-+++...++.+.|..
T Consensus 334 cwisl~i~~iLl~aLQlvniyWl~lIvRva 363 (395)
T COG5058 334 CWISLPIVFILLQALQLVNIYWLFLIVRVA 363 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888999999999998776555543
No 283
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.01 E-value=82 Score=31.48 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=24.7
Q ss_pred hcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020 350 YTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 383 (451)
Q Consensus 350 ~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~ 383 (451)
+-+=|..|| .|+|+++.++|++++.+++..+
T Consensus 207 FPLWP~~mR---~gvyY~sig~~gfl~~IlvLaI 237 (372)
T KOG2927|consen 207 FPLWPRRMR---QGVYYLSIGAGGFLAFILVLAI 237 (372)
T ss_pred cccCcHHHh---cceeeeecchhHHHHHHHHHHH
Confidence 447788888 8999999988888887766554
No 284
>PF15069 FAM163: FAM163 family
Probab=34.36 E-value=49 Score=28.59 Aligned_cols=9 Identities=33% Similarity=0.626 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 013020 415 LSMANFLYY 423 (451)
Q Consensus 415 l~lv~~~~~ 423 (451)
|++++.+.|
T Consensus 19 LcIIaVLCY 27 (143)
T PF15069_consen 19 LCIIAVLCY 27 (143)
T ss_pred HHHHHHHHH
Confidence 334444433
No 285
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=34.30 E-value=85 Score=23.33 Aligned_cols=24 Identities=13% Similarity=0.374 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 013020 406 DYYYWLLTALSMANFLYYLACCKA 429 (451)
Q Consensus 406 ~~~f~~la~l~lv~~~~~~~~~~~ 429 (451)
..+|+-..+..+++.+++.++.+.
T Consensus 29 Pff~~w~~~wv~lts~~~~~~y~l 52 (66)
T PF11755_consen 29 PFFYWWQLAWVVLTSVCMAIVYRL 52 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344443444444455544444443
No 286
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=34.01 E-value=4.4e+02 Score=28.17 Aligned_cols=123 Identities=11% Similarity=0.046 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcc-ccccch----HH
Q 013020 251 LTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLR-AVVQMS----AM 325 (451)
Q Consensus 251 iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~-~~~~~s----~~ 325 (451)
=++.+|++|.+..+-.-|| +..=.+.+...|+++..+|.-+. +....+. .++...+++. ....++ .+
T Consensus 52 KlLWaPiVDs~y~~~~GRR----KSWiiP~Q~l~g~~m~~l~~~i~---~~~~~~~-~~d~~~~~~~~~~~~~~i~~Lt~ 123 (544)
T PF13000_consen 52 KLLWAPIVDSVYSKRIGRR----KSWIIPIQYLSGILMLYLSYNIS---QWLLFDG-VDDALLGQGESTVNNITIKFLTW 123 (544)
T ss_pred HHhhhhhhhhhcccccCCc----chhhhHHHHHHHHHHHHHHhccc---hhhcccc-cchhhhcCCCCcccccchhHHHH
Confidence 3678999998765433222 22346667778887777766541 0000000 0000111111 112233 22
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhcc
Q 013020 326 WQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDD 385 (451)
Q Consensus 326 wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~ 385 (451)
+...-+++.+.=++-+--=++.+. + ++..|.+.........+|.+++-.+.-..+.
T Consensus 124 ~F~~L~fl~ATQDIAVDGWALT~L---s-~~n~~~ASTcqtvG~~~Gyfls~tvFlalns 179 (544)
T PF13000_consen 124 FFFILVFLCATQDIAVDGWALTML---S-PENVGYASTCQTVGQTAGYFLSFTVFLALNS 179 (544)
T ss_pred HHHHHHHHHccCCceeehhhhhhc---C-hhhcchHHHHHHhHhhhhHHHHHHHHHhhCC
Confidence 333444555555544443333333 3 3345677777777777888887666555554
No 287
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=31.32 E-value=62 Score=34.07 Aligned_cols=68 Identities=12% Similarity=0.226 Sum_probs=48.9
Q ss_pred ccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHHHHHHHHHHHH
Q 013020 50 IRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSF 123 (451)
Q Consensus 50 ~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~i~~~i~li~f 123 (451)
+...-...+.++|++ + .++.+++.-+...+|+-.++..++.+.+-++.||..+-.+.-+.++++.+.|
T Consensus 283 ve~~~k~~v~~~~p~--~----~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~lit~~~F 350 (472)
T TIGR00769 283 VEVTWKSKLKAQYPS--P----NEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLLTGVAF 350 (472)
T ss_pred HHHHHHHHHHHHCCC--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333444666778743 3 4689999999999999997777667899999999877776555555543333
No 288
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=30.71 E-value=18 Score=33.39 Aligned_cols=45 Identities=7% Similarity=0.031 Sum_probs=29.3
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCcCCCCC
Q 013020 401 NKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKD 445 (451)
Q Consensus 401 n~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~~~~~~~~~~~~ 445 (451)
++.+...++.++|+.+.|.+++|+...-||.++..+....+-+|-
T Consensus 33 ~~d~~~I~iaiVAG~~tVILVI~i~v~vR~CRq~~~k~g~QagKq 77 (221)
T PF08374_consen 33 SKDYVKIMIAIVAGIMTVILVIFIVVLVRYCRQSPHKKGYQAGKQ 77 (221)
T ss_pred cccceeeeeeeecchhhhHHHHHHHHHHHHHhhccccchhhhccc
Confidence 334455677788888888888888776676664444444444444
No 289
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=28.60 E-value=73 Score=33.72 Aligned_cols=83 Identities=12% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccc----ccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 36 LYFAFGLMSLGSGG----IRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 36 ~~~~L~lialG~G~----~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+...+.++.+..|. +...-.+.+.++|+++.+ ..++++-+...+++-+++-.++.+.+-++.||..+-.+
T Consensus 281 yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~------ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~Ali 354 (491)
T PF03219_consen 281 YLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPND------YSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALI 354 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 013020 112 PAVIMLLSALSFF 124 (451)
Q Consensus 112 ~~i~~~i~li~f~ 124 (451)
.=+.++++.+.|+
T Consensus 355 tPiv~lit~~~FF 367 (491)
T PF03219_consen 355 TPIVILITGLLFF 367 (491)
T ss_pred hHHHHHHHHHHHH
No 290
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=28.45 E-value=4.1 Score=41.89 Aligned_cols=83 Identities=20% Similarity=0.195 Sum_probs=61.1
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeee---ccCccch
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD---NLGWKVG 108 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~---~~g~~~~ 108 (451)
....+.++-.+.++|.|+.-+....+..+.-++ ++|.....++..+.++|.+++..+...+.+ +.+|++.
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~-------~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~ 173 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPP-------KHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRIL 173 (451)
T ss_pred ccccccccccccccccccccccccccccccccc-------cccccccccccccccccccccccccccccccccccccccc
Confidence 677888888999999999988888888766543 346666777888889999888765544433 3569999
Q ss_pred hhHHHHHHHHHHH
Q 013020 109 FGVPAVIMLLSAL 121 (451)
Q Consensus 109 F~i~~i~~~i~li 121 (451)
+.++++..++.++
T Consensus 174 ~~~~~~~~l~~~~ 186 (451)
T PF00083_consen 174 LIFGAIPSLLVLL 186 (451)
T ss_pred ccccccccccccc
Confidence 8887766654433
No 291
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=28.25 E-value=3.9e+02 Score=23.05 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=14.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHh
Q 013020 321 QMSAMWQLPYLVLSGLAMAFNM 342 (451)
Q Consensus 321 ~~s~~wli~~y~l~~igEl~~~ 342 (451)
+.++.|++.. +++-++|++..
T Consensus 3 ~~~~~wli~g-~~ll~~E~l~~ 23 (140)
T COG1585 3 MGAWIWLILG-LLLLIAEILGP 23 (140)
T ss_pred chhHHHHHHH-HHHHHHHHhcc
Confidence 3567888877 66667787654
No 292
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=27.98 E-value=98 Score=28.27 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHH-HHHHHHHHHhhhhheeee--ccCccchh
Q 013020 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV-FVSASSIVAVTCIVYIQD--NLGWKVGF 109 (451)
Q Consensus 33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~-~iNiGa~i~~~~~~~i~~--~~g~~~~F 109 (451)
...+.+...+.+++.|..-|...++.++.+++ . .++...++++.. ..++|..+++.+.+.+.. ..+|+..|
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPE-A-----TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAF 167 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 44455555557788888889999999998875 2 246667777777 577788887755544443 35677755
Q ss_pred hHHHHH
Q 013020 110 GVPAVI 115 (451)
Q Consensus 110 ~i~~i~ 115 (451)
.+....
T Consensus 168 ~~~~~~ 173 (338)
T COG0477 168 LLAALL 173 (338)
T ss_pred HHHHHH
Confidence 544433
No 293
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=27.87 E-value=2.3e+02 Score=25.64 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCc-hhhhHHHHHHhH-HHHHHHHHHHHHhhhh
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK-SMSSIASTLSGA-GLSAANLVASLIMNAV 383 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~-~~kg~~~g~~~l-~~aiG~~l~~~l~~~~ 383 (451)
+.++++...++.+++.....|.....+.+..|+ ..++...+.... ...+|..+++.+....
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLL 155 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666778999999999999999999998 677888887777 4666767766554443
No 294
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=27.11 E-value=88 Score=24.38 Aligned_cols=27 Identities=11% Similarity=0.130 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcccCCC
Q 013020 411 LLTALSMANFLYYLACCKAYGPFKGRV 437 (451)
Q Consensus 411 ~la~l~lv~~~~~~~~~~~y~~~~~~~ 437 (451)
.+.++.+++.+++.++.+.|++..++.
T Consensus 11 aliv~~iiaIvvW~iv~ieYrk~~rqr 37 (81)
T PF00558_consen 11 ALIVALIIAIVVWTIVYIEYRKIKRQR 37 (81)
T ss_dssp HHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666676776655443
No 295
>PF15471 TMEM171: Transmembrane protein family 171
Probab=26.92 E-value=76 Score=30.44 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=28.1
Q ss_pred CCCCCCCCCCcc---h---hHHH---HHHHHHHHHHHHHHHHHhhhcCcccCC
Q 013020 393 GGWIPSNINKGH---Y---DYYY---WLLTALSMANFLYYLACCKAYGPFKGR 436 (451)
Q Consensus 393 ~~w~~~~ln~~~---~---~~~f---~~la~l~lv~~~~~~~~~~~y~~~~~~ 436 (451)
.+|-.+.+|+.. . ..-| -+++-+-++.++.|++++..-||.+-.
T Consensus 137 ~~w~~~~lN~T~t~~~e~q~CGFLslQImGPlIVl~GLCFFVVAHvKKr~nln 189 (319)
T PF15471_consen 137 SGWPQEPLNETDTSDSEPQICGFLSLQIMGPLIVLVGLCFFVVAHVKKRNNLN 189 (319)
T ss_pred CCCccccccCCCCCCCCccccceeehhhhhhHHHHHhhhhhheeeeeeccCCC
Confidence 478888888643 1 1112 256777777888888888775554433
No 296
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=24.75 E-value=5e+02 Score=27.27 Aligned_cols=21 Identities=14% Similarity=-0.056 Sum_probs=18.6
Q ss_pred hhHHHHHHhHHHHHHHHHHHH
Q 013020 358 SSIASTLSGAGLSAANLVASL 378 (451)
Q Consensus 358 kg~~~g~~~l~~aiG~~l~~~ 378 (451)
.|.++++|++..+++.++-..
T Consensus 222 ~G~lf~lYli~Ygi~RF~iEf 242 (460)
T PRK13108 222 HGRLFGFYVAFYCAGRFCVEL 242 (460)
T ss_pred CchHHHHHHHHHHHHHHHhhh
Confidence 499999999999999998764
No 297
>PF15050 SCIMP: SCIMP protein
Probab=24.56 E-value=71 Score=26.70 Aligned_cols=9 Identities=22% Similarity=0.674 Sum_probs=5.6
Q ss_pred hHHHHHHHH
Q 013020 406 DYYYWLLTA 414 (451)
Q Consensus 406 ~~~f~~la~ 414 (451)
++|+.++|+
T Consensus 6 ~nFWiiLAV 14 (133)
T PF15050_consen 6 DNFWIILAV 14 (133)
T ss_pred hchHHHHHH
Confidence 456666764
No 298
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=24.51 E-value=1.4e+02 Score=29.27 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=60.6
Q ss_pred CCCCccchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCc
Q 013020 26 ESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGW 105 (451)
Q Consensus 26 ~~~~~~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~ 105 (451)
.+|++.+...-++|..++-...|.+-|.+.-+-. ||-++ +.|....|||-.=.|+=+-++....-.-....+-
T Consensus 337 vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRs-qyIPE------earstimNfFRvPLnifvClvLynlh~~~~p~~t 409 (454)
T KOG4332|consen 337 VSPSKESPSESLIGFCLFEACVGLFWPSIMKMRS-QYIPE------EARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTT 409 (454)
T ss_pred cCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHH-hhCCH------HHHhhhhhheechhhHhhhhhheecccccCcccc
Confidence 4455666777789999999999999999876655 55543 3578999999987776444332110000112344
Q ss_pred cchhhHHHHHHHHHHHH
Q 013020 106 KVGFGVPAVIMLLSALS 122 (451)
Q Consensus 106 ~~~F~i~~i~~~i~li~ 122 (451)
+.-|++|.+.+.++.+.
T Consensus 410 r~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 410 RNMFGICSAFLFVASIL 426 (454)
T ss_pred chhhhhhHHHHHHHHHH
Confidence 56799999999888663
No 299
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=23.75 E-value=8.4e+02 Score=25.35 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=25.0
Q ss_pred cccCchhhhhHHHHHHHHHHHHHHHHhhh
Q 013020 237 EIPSGSFNIFAILTLTIWIGLYDRAVLPL 265 (451)
Q Consensus 237 ~ip~~~l~~~n~l~iii~~pl~~~~~~pl 265 (451)
-+|++.++.+..+..+++.|.+..++...
T Consensus 37 Ll~~siygl~~~~~~~~f~~~vG~~iD~~ 65 (432)
T PF06963_consen 37 LLPVSIYGLVRSLSAILFGPWVGRWIDRS 65 (432)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHHhCC
Confidence 46888999999999999999999887643
No 300
>COG0682 Lgt Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]
Probab=21.64 E-value=4.2e+02 Score=25.93 Aligned_cols=49 Identities=10% Similarity=0.030 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHH
Q 013020 328 LPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVAS 377 (451)
Q Consensus 328 i~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~ 377 (451)
-|.++-=++.|..+....+-+..+. |...+|...+++.+..+++.+...
T Consensus 189 hPsqLYE~~~~~iv~~iil~~~~~~-~~~~~G~v~~~y~~~Yg~~Rf~iE 237 (287)
T COG0682 189 HPSQLYESFLEGIVFFIILFLFRRK-PLLKSGFVFGLYLIGYGLFRFFIE 237 (287)
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHhc-ccCCCeeeehhHHHHHHHHHHhhh
Confidence 4777888999999998888888877 777889999999999999998865
No 301
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.85 E-value=91 Score=32.42 Aligned_cols=39 Identities=8% Similarity=0.110 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcccCCCCCcCCCCCCccc
Q 013020 411 LLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEE 449 (451)
Q Consensus 411 ~la~l~lv~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 449 (451)
++-...+++.++.-.+.+-|.|-.++|++++|.+..|.|
T Consensus 236 VifLvGlvamILMRtLrnDyarY~~dee~~d~~d~d~~~ 274 (593)
T KOG1277|consen 236 VIFLVGLVAMILMRTLRNDYARYAKDEEALDDMDRDDQE 274 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhccccccccc
Confidence 344455777777788888888888887655555544443
No 302
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=20.26 E-value=1.8e+02 Score=30.86 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=21.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhcCcccCC
Q 013020 404 HYDYYYWLLTALSMANFLYYLACCKAYGPFKGR 436 (451)
Q Consensus 404 ~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~~~ 436 (451)
...+||+..+.--++..+..++.-|..++|-.+
T Consensus 200 p~~N~yF~~aSt~~l~~v~~~vt~kivePrl~~ 232 (502)
T PF03806_consen 200 PLMNYYFMIASTFVLTIVGTWVTEKIVEPRLGK 232 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Confidence 356777777776677777777666666655433
Done!