Query 013020
Match_columns 451
No_of_seqs 148 out of 1334
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 20:43:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.8 5.8E-19 2E-23 184.2 9.9 368 32-436 108-512 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.7 2.4E-15 8.3E-20 155.3 21.5 345 32-434 107-479 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.1 1.1E-08 3.8E-13 103.5 20.9 309 32-429 118-436 (451)
4 3o7q_A L-fucose-proton symport 98.5 8.3E-06 2.8E-10 81.9 20.6 87 31-124 115-227 (438)
5 4gc0_A D-xylose-proton symport 98.2 3E-05 1E-09 79.1 17.1 83 30-119 123-213 (491)
6 2gfp_A EMRD, multidrug resista 98.2 4.6E-07 1.6E-11 89.5 3.3 83 32-121 87-169 (375)
7 1pw4_A Glycerol-3-phosphate tr 98.0 9.1E-05 3.1E-09 74.4 14.4 142 242-428 66-208 (451)
8 4aps_A DI-OR tripeptide H+ sym 97.9 6.8E-05 2.3E-09 76.6 13.4 142 242-432 58-202 (491)
9 3o7q_A L-fucose-proton symport 97.7 0.00077 2.6E-08 67.3 16.7 113 242-384 65-177 (438)
10 2xut_A Proton/peptide symporte 97.5 0.001 3.5E-08 68.4 13.5 141 243-430 59-202 (524)
11 2gfp_A EMRD, multidrug resista 97.3 0.0026 9E-08 62.1 13.4 110 242-384 39-148 (375)
12 2cfq_A Lactose permease; trans 96.8 0.012 4.2E-07 58.7 12.9 88 324-427 312-400 (417)
13 4gc0_A D-xylose-proton symport 95.4 0.34 1.2E-05 48.6 16.1 64 321-384 123-186 (491)
14 2cfq_A Lactose permease; trans 92.8 0.03 1E-06 55.8 1.3 84 35-125 314-398 (417)
15 2jo1_A Phospholemman; FXYD1, N 27.7 65 0.0022 23.2 3.7 21 412-433 23-43 (72)
16 3zux_A Transporter, ASBTNM; tr 27.4 3.9E+02 0.013 25.1 11.2 23 241-263 163-185 (332)
17 2ks1_B Epidermal growth factor 20.6 1E+02 0.0035 20.1 3.3 18 414-431 23-40 (44)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.77 E-value=5.8e-19 Score=184.22 Aligned_cols=368 Identities=17% Similarity=0.248 Sum_probs=208.3
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+.+.++++..+.++|.|...|...++++|.+++++. .+..+.|++++.+.|+|..+++.+.+++.++.||++.|.+
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r----~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~ 183 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK----SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI 183 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT----THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 567788999999999999999999999999986543 3467889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchh----------hccCCCccccCC---
Q 013020 112 PAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEM----------YHHGKGSMRLMP--- 178 (451)
Q Consensus 112 ~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~--- 178 (451)
.++..+++++.++..++++++++|++++.....+.+..+.+++..... .. ... +....... ...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 260 (524)
T 2xut_A 184 PGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NI-GLVLALIGGVSAAYALVNIPT-LGIVAG 260 (524)
T ss_dssp HHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HH-HHHHHHHHHHHHHHTGGGTTT-TCSSHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-cc-chhhhhhhhhhhhhhhcccch-hhhhhh
Confidence 999988888877766555544344433322222232222222210000 00 000 00000000 000
Q ss_pred -----------CCchhh--hhhhhhhcCCCCCCCCCC----------CCCCCCCcchhHHHHHHHHHHHHhhccCcCCCC
Q 013020 179 -----------SENLRF--LNKACMAKHPEQDLTPDG----------RASNPNSLCTVEQVEELKALIKASSMDRHVTPN 235 (451)
Q Consensus 179 -----------~~~~~~--l~~a~~~~~~~~~~~~~~----------~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g 235 (451)
.....| ++.++....... ..... .....|..+. +... -.......++.. .
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~---~ 333 (524)
T 2xut_A 261 LCCAMVLVMGFVGAGASLQLERARKSHPDAA-VDGVRSVLRILVLFALVTPFWSLFD--QKAS-TWILQANDMVKP---Q 333 (524)
T ss_dssp HHHHHHHHHHHHHTGGGTHHHHSCCSCCSSS-STTTTTHHHHHHHHTTSHHHHTTTS--STTT-HHHHHHHHSCCC---S
T ss_pred hhhhhhhhhcccccchhhHHhhhhccccHhH-HHHHHHHHHHHHHHHHHHHHHHHHh--ccch-hhHHhHHhcCCC---e
Confidence 000001 111000000000 00000 0000000000 0000 000001223321 1
Q ss_pred ccccCchhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 013020 236 FEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDD 315 (451)
Q Consensus 236 ~~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~ 315 (451)
+ ++..++..++++..++..|+.+++..|..+|++++ +++.+++.+|+++.+++++.+++.+..+ +
T Consensus 334 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~------ 398 (524)
T 2xut_A 334 W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMM-----D------ 398 (524)
T ss_dssp S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT-----T------
T ss_pred e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh-----c------
Confidence 1 36677888888999999999999888877775433 5777889999999998888766543210 0
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCC
Q 013020 316 LRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGW 395 (451)
Q Consensus 316 ~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w 395 (451)
.....+.+|+++.+++.++++.+..|...+++.+.+|++.||.++|++.....+|+.+++.+...+.+.+. .+|
T Consensus 399 --~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~ 472 (524)
T 2xut_A 399 --GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQ 472 (524)
T ss_dssp --TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHH
T ss_pred --CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccc
Confidence 01246888999999999999999999999999999999999999999999999999999998887654221 124
Q ss_pred CCC-CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCcccCC
Q 013020 396 IPS-NINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGR 436 (451)
Q Consensus 396 ~~~-~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~~~ 436 (451)
.++ +++. ..+.|++.++++++..+++++..+++++++++
T Consensus 473 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (524)
T 2xut_A 473 IVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQDHY 512 (524)
T ss_dssp HHHHHSCH--HHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 321 1121 12337888899999998888888887766543
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.67 E-value=2.4e-15 Score=155.26 Aligned_cols=345 Identities=14% Similarity=0.120 Sum_probs=210.4
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+.+.++++..+.++|.|...|...++++|.+++++. +|..++++++.+.|+|..+++.+.+++.++.||++.|.+
T Consensus 107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~ 181 (491)
T 4aps_A 107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR-----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL 181 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc-----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 457788999999999999999999999999986543 578899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCccEeec---CCCCC-chhHHHHHHH--------------HHHHhcCCCCCCcccchhhccCCCc
Q 013020 112 PAVIMLLSALSFFLASPFYVKS---KANTS-LLPGLTQVLV--------------ASFKNRRTKLPTQATEEMYHHGKGS 173 (451)
Q Consensus 112 ~~i~~~i~li~f~~g~~~~~~~---~p~~~-~l~~~~~vl~--------------~a~~~~~~~~~~~~~~~~~~~~~~~ 173 (451)
+++..+++++.++..++++.++ +|+.. ...+..+... ............ . ... ...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~-~-~~~-~~~--- 255 (491)
T 4aps_A 182 AAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPA-Y-INL-LTI--- 255 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTH-H-HHH-HHH---
T ss_pred HHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccccc-c-hhh-hhH---
Confidence 9988888887776544333222 11111 1111111000 000000000000 0 000 000
Q ss_pred cccCCCCchhhhh-hhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHh--------hccCcCCCCcc-ccCchh
Q 013020 174 MRLMPSENLRFLN-KACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKAS--------SMDRHVTPNFE-IPSGSF 243 (451)
Q Consensus 174 ~~~~~~~~~~~l~-~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~--------~md~~~~~g~~-ip~~~l 243 (451)
........ ......... ..... ....+..... ..-..-...... ...... +.. .+.+++
T Consensus 256 -----~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 324 (491)
T 4aps_A 256 -----VAIAIPVFYFAWMISSVK--VTSTE-HLRVVSYIPL-FIAAVLFWAIEEQGSVVLATFAAERV--DSSWFPVSWF 324 (491)
T ss_dssp -----HHHHHHHHHHHHHC---------------CTTHHHH-HHHHHHHHHHHGGGGTHHHHHHHHSC--CCSSSCSGGG
T ss_pred -----HHHHHHHHHHHHHhhccc--ccHHH-HHHHHHHHHH-HHHHHHHHHHHhhccHHHHHHHHHHh--ccCccCHHHH
Confidence 00000000 000000000 00000 0000000000 000000000000 011111 112 567788
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccch
Q 013020 244 NIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMS 323 (451)
Q Consensus 244 ~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s 323 (451)
..++.+..++..|+..++..++.|| + +....++.+|+++.+++++.+++..... + ...+.+
T Consensus 325 ~~~~~~~~~~~~~~~~~l~~r~~~r---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~------~~~~~~ 385 (491)
T 4aps_A 325 QSLNPLFIMLYTPFFAWLWTAWKKN---Q---PSSPTKFAVGLMFAGLSFLLMAIPGALY-------G------TSGKVS 385 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHC-------C------CCTTCC
T ss_pred hccchHHHHHHHHHHHHHHHHHhcc---C---CCchHHHHHHHHHHHHHHHHHHHHHHhc-------C------CCCCcc
Confidence 9999999999999998865444332 1 5677889999999999998887765320 1 013578
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCc
Q 013020 324 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKG 403 (451)
Q Consensus 324 ~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~ 403 (451)
.+|+++.+++.++++.+..|...+++.+..|++.||.++|++.....+|+.+++.+...+.+.
T Consensus 386 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~----------------- 448 (491)
T 4aps_A 386 PLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK----------------- 448 (491)
T ss_dssp THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------
Confidence 899999999999999999999999999999999999999999999999999999888776532
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhcCccc
Q 013020 404 HYDYYYWLLTALSMANFLYYLACCKAYGPFK 434 (451)
Q Consensus 404 ~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~ 434 (451)
.....|+.+++++++..+++++..++.+++.
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (491)
T 4aps_A 449 SEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM 479 (491)
T ss_dssp STTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1345677888888888888877777766553
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.05 E-value=1.1e-08 Score=103.48 Aligned_cols=309 Identities=10% Similarity=0.004 Sum_probs=169.7
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccC-ccchhh
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFG 110 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g-~~~~F~ 110 (451)
+...++++..+.++|.|...+...++++|.+++ ++|...++++..+.++|.++++.+.+++.+..| |++.|.
T Consensus 118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~ 190 (451)
T 1pw4_A 118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY 190 (451)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTH
T ss_pred cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 456788889999999999999999999999874 368899999999999999999999988878888 999999
Q ss_pred HHHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhhhh
Q 013020 111 VPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACM 190 (451)
Q Consensus 111 i~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 190 (451)
+.++..++..++.+...+.-++.. +..+..+ .+. ..+. . ..+.... .........+ ..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~-~~~~----~-~~~~~~~----~~~~~~~~~~-~~ 248 (451)
T 1pw4_A 191 MPAFCAILVALFAFAMMRDTPQSC-GLPPIEE----------YKN-DYPD----D-YNEKAEQ----ELTAKQIFMQ-YV 248 (451)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSTTT-CCCSCTT----------TCC-C----------------------CCTHHHHH-HT
T ss_pred HHHHHHHHHHHHHHhhccCCHhhc-CCCChhh----------hcc-cccc----c-chhhhhc----ccccccchHH-HH
Confidence 988776665544332222110000 0000000 000 0000 0 0000000 0000000000 00
Q ss_pred hcCCCCCCCCCCCCCCCCCcch----hHHHHHHHHHHHHhhccCcCCCCccccCc---hhhhhHHHHHHHHHHHHHHHHh
Q 013020 191 AKHPEQDLTPDGRASNPNSLCT----VEQVEELKALIKASSMDRHVTPNFEIPSG---SFNIFAILTLTIWIGLYDRAVL 263 (451)
Q Consensus 191 ~~~~~~~~~~~~~~~~~w~l~~----~~~v~~~k~~~~~~~md~~~~~g~~ip~~---~l~~~n~l~iii~~pl~~~~~~ 263 (451)
++ ....|.++- ..-....-..+-...+... ...++. ++.....+..++..++..++.
T Consensus 249 -------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~- 312 (451)
T 1pw4_A 249 -------LP----NKLLWYIAIANVFVYLLRYGILDWSPTYLKEV----KHFALDKSSWAYFLYEYAGIPGTLLCGWMS- 312 (451)
T ss_dssp -------SS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred -------Hc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 00 000000000 0000000000001112211 123332 334444444555555554443
Q ss_pred hhhhhccCCCCCCCcchhhhHhHHHHH-HHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHh
Q 013020 264 PLASKIKGKPCQLSLKLRMGIGLLFST-ASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNM 342 (451)
Q Consensus 264 pl~~r~~~~~~~~s~~~ki~iG~~l~~-~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~ 342 (451)
+|..+ ...+.+.++.++.+ ++++...+. ...+.++.+...++.+++-....
T Consensus 313 ---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~~~~ 364 (451)
T 1pw4_A 313 ---DKVFR-----GNRGATGVFFMTLVTIATIVYWMN--------------------PAGNPTVDMICMIVIGFLIYGPV 364 (451)
T ss_dssp ---HHTST-----TCHHHHHHHHHHHHHHHHHHTTSC--------------------CTTCHHHHHHHHHHHHHHHTHHH
T ss_pred ---HHHhc-----CCchhHHHHHHHHHHHHHHHHHHh--------------------cccCHHHHHHHHHHHHHHHhchH
Confidence 33200 11122333443333 333322111 01356666777788888888888
Q ss_pred hhhHHHhhcccCchhhhHHHHHHhHHHHH-HHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 013020 343 IGQTEFYYTELPKSMSSIASTLSGAGLSA-ANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL 421 (451)
Q Consensus 343 p~g~ef~~~~aP~~~kg~~~g~~~l~~ai-G~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~ 421 (451)
+....++.+..|++.+|.++|+......+ |..+++.+.+.+.+.. + +...|+..++++++..+
T Consensus 365 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~------g----------~~~~~~~~~~~~~~~~~ 428 (451)
T 1pw4_A 365 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------G----------WDGGFMVMIGGSILAVI 428 (451)
T ss_dssp HHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------C----------SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C----------cHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999998998 9999998877654321 1 34567777888777777
Q ss_pred HHHHHhhh
Q 013020 422 YYLACCKA 429 (451)
Q Consensus 422 ~~~~~~~~ 429 (451)
+++...++
T Consensus 429 ~~~~~~~~ 436 (451)
T 1pw4_A 429 LLIVVMIG 436 (451)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 66665444
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.50 E-value=8.3e-06 Score=81.87 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=71.3
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheee-eccC-----
Q 013020 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ-DNLG----- 104 (451)
Q Consensus 31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~-~~~g----- 104 (451)
.+.+.++++..+.++|.|...+...++++|.+++ ++|...++++..+.++|..+++.+.+++. +..+
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 187 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-------SSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQD 187 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS-------TTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 3567889999999999999999999999999875 35778899999999999999999988887 5554
Q ss_pred --------------------ccchhhHHHHHHHHHHHHHH
Q 013020 105 --------------------WKVGFGVPAVIMLLSALSFF 124 (451)
Q Consensus 105 --------------------~~~~F~i~~i~~~i~li~f~ 124 (451)
|++.|.+.++..++..+.++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 188 VLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 89999776665555544443
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.22 E-value=3e-05 Score=79.15 Aligned_cols=83 Identities=14% Similarity=0.097 Sum_probs=62.3
Q ss_pred ccchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeec-------
Q 013020 30 WSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN------- 102 (451)
Q Consensus 30 ~~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~------- 102 (451)
..+...++++-.+.++|.|+.-+....+++|..++ ++|.....++..++.+|.+++......+...
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 195 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPA-------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLN 195 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG-------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HhhhhhHHhhhhhhhhhhhhhhhcchhhcccccccccc
Confidence 35678899999999999999999999999987753 4678888889999999999988765544332
Q ss_pred -cCccchhhHHHHHHHHH
Q 013020 103 -LGWKVGFGVPAVIMLLS 119 (451)
Q Consensus 103 -~g~~~~F~i~~i~~~i~ 119 (451)
.+|++.+.+..+..++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~ 213 (491)
T 4gc0_A 196 TDGWRYMFASECIPALLF 213 (491)
T ss_dssp TTHHHHHHHTTHHHHHHH
T ss_pred chhhHHHhhhhhhhhhhh
Confidence 34555555554444433
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.22 E-value=4.6e-07 Score=89.51 Aligned_cols=83 Identities=13% Similarity=0.106 Sum_probs=71.1
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (451)
Q Consensus 32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i 111 (451)
+.+.++++..+.++|.|...+...++..|.++++ +|.+.++++..+.++|..+++.+.+++.++.||++.|.+
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT-------QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-------SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH-------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 4567778888899999999999999999998752 467788999999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 013020 112 PAVIMLLSAL 121 (451)
Q Consensus 112 ~~i~~~i~li 121 (451)
.++..++..+
T Consensus 160 ~~~~~~~~~~ 169 (375)
T 2gfp_A 160 LLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 7777666554
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.96 E-value=9.1e-05 Score=74.39 Aligned_cols=142 Identities=10% Similarity=-0.015 Sum_probs=97.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 321 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~ 321 (451)
++.+...+..++..|+..++..+.-+| +-+.+|.++.+++.+..++.... .
T Consensus 66 ~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~------------------~ 116 (451)
T 1pw4_A 66 FALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA------------------T 116 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH------------------H
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCch-----------HHHHHHHHHHHHHHHHHHhhhhc------------------c
Confidence 344555555566666666554332222 23567788888877776653210 1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCC-CCCCCC
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGG-WIPSNI 400 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~-w~~~~l 400 (451)
.+.++++...++.|++.....|....++.+..|++.|+..+|++....++|..+++.+....-... + |-
T Consensus 117 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~w~---- 186 (451)
T 1pw4_A 117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF------NDWH---- 186 (451)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT------CCST----
T ss_pred ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccHH----
Confidence 345677788999999999999999999999999999999999999999999999988876533211 3 51
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 013020 401 NKGHYDYYYWLLTALSMANFLYYLACCK 428 (451)
Q Consensus 401 n~~~~~~~f~~la~l~lv~~~~~~~~~~ 428 (451)
..|++.++++++..++.++..+
T Consensus 187 ------~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 187 ------AALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp ------TCTHHHHHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHHHHHHHHhhcc
Confidence 2355666666666555444433
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.95 E-value=6.8e-05 Score=76.56 Aligned_cols=142 Identities=12% Similarity=0.044 Sum_probs=99.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhh-hhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLP-LASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 320 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~p-l~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~ 320 (451)
++.+...+...+..|+..++..+ +-|| +-+.+|.++.+++.+..++
T Consensus 58 ~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~---------------------- 104 (491)
T 4aps_A 58 SIMAIYASMVYLSGTIGGFVADRIIGAR-----------PAVFWGGVLIMLGHIVLAL---------------------- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCHH-----------HHHHHHHHHHHHHHHHHHS----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHHHHHH----------------------
Confidence 45566666666777777666543 2222 1255667666666654432
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchh--hhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCC
Q 013020 321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM--SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPS 398 (451)
Q Consensus 321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~--kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~ 398 (451)
..|.++++...++.|+++....|....++.+..|++. |+..++++.....+|..+++.+...+.+.. +|
T Consensus 105 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------g~--- 175 (491)
T 4aps_A 105 PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA------GY--- 175 (491)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------CH---
T ss_pred hhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh------hH---
Confidence 1356667778899999999999999999999999988 888888888989999999988887764321 33
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCc
Q 013020 399 NINKGHYDYYYWLLTALSMANFLYYLACCKAYGP 432 (451)
Q Consensus 399 ~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~ 432 (451)
...|+..+++.++..++++...+++.+
T Consensus 176 -------~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 176 -------HVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 345566666677777766666665543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.73 E-value=0.00077 Score=67.31 Aligned_cols=113 Identities=12% Similarity=-0.017 Sum_probs=86.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 321 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~ 321 (451)
++.+...+..++..|+..++..+.-+| +-+.+|.++.+++.+....... .
T Consensus 65 ~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~-------------------~ 114 (438)
T 3o7q_A 65 LIQSAFYFGYFIIPIPAGILMKKLSYK-----------AGIITGLFLYALGAALFWPAAE-------------------I 114 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHHHH-------------------T
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHhccc-------------------c
Confidence 345555556666667766654433222 2367788887777776643321 2
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
.+.++++...++.|++.....+....++.+..|++.|+..+|++....++|..+++.+.....
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888999999999999999999999999999999999999999999999999887764
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.46 E-value=0.001 Score=68.41 Aligned_cols=141 Identities=14% Similarity=-0.012 Sum_probs=91.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccc
Q 013020 243 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM 322 (451)
Q Consensus 243 l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~ 322 (451)
+.+...+..++..|+..++. .|.. ...+-+.+|.++.+++.+..++. +.
T Consensus 59 ~~~~~~~~~~~~~~~~G~l~----dr~~------g~r~~~~~~~~~~~~~~~~~~~~---------------------~~ 107 (524)
T 2xut_A 59 VFHSFVIGVYFFPLLGGWIA----DRFF------GKYNTILWLSLIYCVGHAFLAIF---------------------EH 107 (524)
T ss_dssp HHHHHHHHHHHTHHHHHHHH----TTSS------CSHHHHHHHHHHHHHHHHHHHHT---------------------SS
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHh------cchHHHHHHHHHHHHHHHHHHHh---------------------cc
Confidence 34444445555555555543 3320 11223556777666666554432 12
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHH---HhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCC
Q 013020 323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL---SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSN 399 (451)
Q Consensus 323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~---~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ 399 (451)
+.++++...++.|+++....|....++.+..|++.|+..++. +.....+|..+++.+...+.+.. +|
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~---- 177 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------GA---- 177 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------CH----
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cH----
Confidence 567778888999999999999999999999999999877666 88888899999888776654211 23
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 013020 400 INKGHYDYYYWLLTALSMANFLYYLACCKAY 430 (451)
Q Consensus 400 ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y 430 (451)
...|++.+++.++..++++...+++
T Consensus 178 ------~~~f~~~~~~~~~~~~~~~~~~~~~ 202 (524)
T 2xut_A 178 ------AVAFGIPGVLMFVATVFFWLGRKRY 202 (524)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3456666666666665554443433
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.28 E-value=0.0026 Score=62.13 Aligned_cols=110 Identities=14% Similarity=0.095 Sum_probs=81.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020 242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 321 (451)
Q Consensus 242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~ 321 (451)
++.+...+...+..|+..++. +|.++| +-+.+|.++.+++.+..++.
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~----dr~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------- 85 (375)
T 2gfp_A 39 SVMGAYLLTYGVSQLFYGPIS----DRVGRR-------PVILVGMSIFMLATLVAVTT---------------------- 85 (375)
T ss_dssp HHHHHHHHHHHHHHTTHHHHH----TTSCCC-------CCCHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHhCCc-------hhHHHHHHHHHHHHHHHHHh----------------------
Confidence 344555555556666655543 443322 12447777777777665544
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
.+.++++...++.+++.....+....++.+..|++.|+..+|.+....++|..+++.+.....
T Consensus 86 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 86 SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 245667778899999999999999999999999999999999999999999999998886654
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=96.75 E-value=0.012 Score=58.65 Aligned_cols=88 Identities=11% Similarity=0.087 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHH-HhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCC
Q 013020 324 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL-SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINK 402 (451)
Q Consensus 324 ~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~-~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~ 402 (451)
.++++...++.+++..+..+....+..+..|++.||..+|+ +....++|+.+++.+.....+..
T Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~--------------- 376 (417)
T 2cfq_A 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI--------------- 376 (417)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc---------------
Confidence 44555555666777666666778899999999999999998 46667788888887776543210
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHh
Q 013020 403 GHYDYYYWLLTALSMANFLYYLACC 427 (451)
Q Consensus 403 ~~~~~~f~~la~l~lv~~~~~~~~~ 427 (451)
.....|...++++++..++.+...
T Consensus 377 -g~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 377 -GFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred -CcHHHHHHHHHHHHHHHHHHHhhh
Confidence 134456777777777776654433
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=95.43 E-value=0.34 Score=48.61 Aligned_cols=64 Identities=6% Similarity=0.067 Sum_probs=56.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020 321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 384 (451)
Q Consensus 321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~ 384 (451)
..|++.++..-++.|+|+-...+.+..++...+|++.|+..++++.....+|..++..+.....
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 3577788889999999999999999999999999999999999999999999988877765543
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=92.75 E-value=0.03 Score=55.84 Aligned_cols=84 Identities=10% Similarity=0.083 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHH-HHHHHHHHHHHHhhhhheeeeccCccchhhHHH
Q 013020 35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW-YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 113 (451)
Q Consensus 35 ~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~-fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~ 113 (451)
.+.+...+.+++.+.+-+...++..|.+++ +.|.+.+.+ +..+.++|+.++|.+.+++.++.||...|.+.+
T Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~ 386 (417)
T 2cfq_A 314 EVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-------HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence 344444445555555555566777777763 456677777 466777999999999999988889999999988
Q ss_pred HHHHHHHHHHHh
Q 013020 114 VIMLLSALSFFL 125 (451)
Q Consensus 114 i~~~i~li~f~~ 125 (451)
+..+++.++.+.
T Consensus 387 ~~~l~~~~~~~~ 398 (417)
T 2cfq_A 387 LVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 888888776554
No 15
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=27.71 E-value=65 Score=23.19 Aligned_cols=21 Identities=0% Similarity=-0.066 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCcc
Q 013020 412 LTALSMANFLYYLACCKAYGPF 433 (451)
Q Consensus 412 la~l~lv~~~~~~~~~~~y~~~ 433 (451)
+|++.++.+++ ++++++.+.+
T Consensus 23 fA~vLfi~GI~-iilS~KckCk 43 (72)
T 2jo1_A 23 IAGILFILGIL-IVLSRRCRCK 43 (72)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHcCccccC
Confidence 33433333333 4555655433
No 16
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=27.41 E-value=3.9e+02 Score=25.09 Aligned_cols=23 Identities=0% Similarity=0.065 Sum_probs=14.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHh
Q 013020 241 GSFNIFAILTLTIWIGLYDRAVL 263 (451)
Q Consensus 241 ~~l~~~n~l~iii~~pl~~~~~~ 263 (451)
+....+-.+..++++|+....+.
T Consensus 163 ~~~~~~~~l~~~vllP~~lG~l~ 185 (332)
T 3zux_A 163 QAAGMLMSIVKMVLLPIVLGLIV 185 (332)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777888887754443
No 17
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=20.58 E-value=1e+02 Score=20.08 Aligned_cols=18 Identities=11% Similarity=-0.201 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhhhcC
Q 013020 414 ALSMANFLYYLACCKAYG 431 (451)
Q Consensus 414 ~l~lv~~~~~~~~~~~y~ 431 (451)
++.++.+++++++.+|-.
T Consensus 23 ~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 23 LLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhhhhHh
Confidence 333444444455554433
Done!