Query 013023
Match_columns 451
No_of_seqs 258 out of 1966
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 20:46:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013023.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013023hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 97.8 0.00012 3.9E-09 61.6 10.8 71 176-285 34-105 (110)
2 2i68_A Protein EMRE; transmemb 97.7 6.5E-05 2.2E-09 65.8 7.8 57 382-438 48-105 (137)
3 2i68_A Protein EMRE; transmemb 97.7 8.8E-05 3E-09 64.9 7.5 70 176-284 34-104 (137)
4 3b5d_A Multidrug transporter E 97.2 0.0015 5E-08 54.8 9.3 55 383-437 49-104 (110)
5 3l1l_A Arginine/agmatine antip 31.9 60 0.0021 32.0 5.9 25 418-442 408-432 (445)
6 2rdd_B UPF0092 membrane protei 29.4 68 0.0023 20.9 3.9 22 426-447 10-31 (37)
7 3aqp_A Probable secdf protein- 6.2 1.7E+03 0.058 23.7 9.5 31 398-428 305-335 (741)
8 2l9u_A Receptor tyrosine-prote 6.1 6.2E+02 0.021 16.3 3.5 13 215-227 2-14 (40)
9 4dx5_A Acriflavine resistance 4.9 1.4E+03 0.047 25.4 7.9 37 395-432 902-938 (1057)
10 4dx5_A Acriflavine resistance 4.7 2.3E+03 0.079 23.5 9.7 87 362-451 339-430 (1057)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.85 E-value=0.00012 Score=61.62 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHhHHHHh-hhchhcccccCchhHHHHHhHhhhhhhhhHHHHHHhhhccchhHHHHHHH
Q 013023 176 IPVAVCHALGHVTSNVSFAAVAVSFTHTI-KGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAA 254 (451)
Q Consensus 176 ~~~~l~~~~~~~~~~~sl~~vsvs~~~~i-k~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lf~l~Pvf~~ll 254 (451)
+...+++.....+...++++.+++.+..+ . .+.|++++++
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~---------------------------------------g~~~v~~~l~ 74 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWS---------------------------------------GVGIVLISLL 74 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHh---------------------------------------hHHHHHHHHH
Confidence 34445667788889999999999998877 6 8999999999
Q ss_pred HHHHhCcccChhHHHHHHHHHHHhhhhcccc
Q 013023 255 SQFILGQQLPLTLWLSLAPVVIGVSMASLTE 285 (451)
Q Consensus 255 s~~~l~ek~~~~~~lsl~~~~~Gv~l~~~~~ 285 (451)
++++++|++++.++++++++++|+.++...+
T Consensus 75 ~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 75 SWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999886644
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.75 E-value=6.5e-05 Score=65.76 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=39.4
Q ss_pred HHHhhhcChHHHHHH-HHHHHHHHHHHHHHHhCCcCchhhHHHHHHHHHHHHHHHhhh
Q 013023 382 TNTLERVAPLTHAVG-NVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 438 (451)
Q Consensus 382 ~~~l~~~s~lt~sv~-~~lk~v~~i~ls~i~fge~ls~~~iiG~~lii~Gv~ly~~~~ 438 (451)
...+++.++...... ..+.|+++.++++++|||+++..+++|++++++|+++.+..+
T Consensus 48 ~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345788888877666 889999999999999999999999999999999999887644
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.67 E-value=8.8e-05 Score=64.91 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHhHHHHh-hhchhcccccCchhHHHHHhHhhhhhhhhHHHHHHhhhccchhHHHHHHH
Q 013023 176 IPVAVCHALGHVTSNVSFAAVAVSFTHTI-KGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAA 254 (451)
Q Consensus 176 ~~~~l~~~~~~~~~~~sl~~vsvs~~~~i-k~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lf~l~Pvf~~ll 254 (451)
+...+++++..++.+.++++++++.+..+ . .+.|++++++
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~---------------------------------------~l~pv~~~l~ 74 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWS---------------------------------------GVGIVLISLL 74 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHH---------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHH---------------------------------------HHHHHHHHHH
Confidence 33445667788899999999999988777 6 8999999999
Q ss_pred HHHHhCcccChhHHHHHHHHHHHhhhhccc
Q 013023 255 SQFILGQQLPLTLWLSLAPVVIGVSMASLT 284 (451)
Q Consensus 255 s~~~l~ek~~~~~~lsl~~~~~Gv~l~~~~ 284 (451)
++++++|++++.++++++++++|+.++...
T Consensus 75 g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 75 SWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999998653
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.24 E-value=0.0015 Score=54.79 Aligned_cols=55 Identities=20% Similarity=0.191 Sum_probs=47.3
Q ss_pred HHhhhcChHHHHHH-HHHHHHHHHHHHHHHhCCcCchhhHHHHHHHHHHHHHHHhh
Q 013023 383 NTLERVAPLTHAVG-NVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 437 (451)
Q Consensus 383 ~~l~~~s~lt~sv~-~~lk~v~~i~ls~i~fge~ls~~~iiG~~lii~Gv~ly~~~ 437 (451)
..+++.+....... ..+.++.+.++++++|||++|..+++|.+++++|+...+..
T Consensus 49 ~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34677777666555 78999999999999999999999999999999999987654
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=31.87 E-value=60 Score=31.98 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhHH
Q 013023 418 TQTGIGTVIAIAGVAAYSYIKAQME 442 (451)
Q Consensus 418 ~~~iiG~~lii~Gv~ly~~~~~~~~ 442 (451)
...+.|.++.+.|+.+|.+.+++.+
T Consensus 408 ~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 408 KEVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3456788888999999887765543
No 6
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=29.44 E-value=68 Score=20.85 Aligned_cols=22 Identities=9% Similarity=0.240 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHh
Q 013023 426 IAIAGVAAYSYIKAQMEEEKRQ 447 (451)
Q Consensus 426 lii~Gv~ly~~~~~~~~~~~~~ 447 (451)
+++.+++.+-..+.++|++|+.
T Consensus 10 v~~~~ifYFl~iRPQ~Kr~K~~ 31 (37)
T 2rdd_B 10 VVFGLIFYFMILRPQQKRTKEH 31 (37)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHH
Confidence 3444555555556655554443
No 7
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=6.23 E-value=1.7e+03 Score=23.69 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhCCcCchhhHHHHHHHH
Q 013023 398 VLKRVFVIGFSILAFGNKISTQTGIGTVIAI 428 (451)
Q Consensus 398 ~lk~v~~i~ls~i~fge~ls~~~iiG~~lii 428 (451)
..-.++..+....++|.+++...+.|.++.+
T Consensus 305 l~~~i~~~~~~l~l~g~~l~l~~i~glil~i 335 (741)
T 3aqp_A 305 LLYTSALILGLLSGLGATLTLPGIAGLVLTL 335 (741)
T ss_dssp HHHHHHHHHHHHHHHCCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 3334444555566789999999998887764
No 8
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=6.05 E-value=6.2e+02 Score=16.32 Aligned_cols=13 Identities=15% Similarity=0.680 Sum_probs=7.0
Q ss_pred CchhHHHHHhHhh
Q 013023 215 GENHFILSMSLLL 227 (451)
Q Consensus 215 ~~~~~~~~~~~i~ 227 (451)
|+++..+...+|.
T Consensus 2 g~thl~malt~i~ 14 (40)
T 2l9u_A 2 GRTHLTMALTVIA 14 (40)
T ss_dssp CSTHHHHHHHHHH
T ss_pred ChhHHHHHHHHHH
Confidence 4555555555555
No 9
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=4.89 E-value=1.4e+03 Score=25.39 Aligned_cols=37 Identities=14% Similarity=0.001 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCcCchhhHHHHHHHHHHHH
Q 013023 395 VGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVA 432 (451)
Q Consensus 395 v~~~lk~v~~i~ls~i~fge~ls~~~iiG~~lii~Gv~ 432 (451)
+....-.++..+.+..++|.+++...++|+++. .|+.
T Consensus 902 l~~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l-~Gi~ 938 (1057)
T 4dx5_A 902 MLVVPLGVIGALLAATFRGLTNDVYFQVGLLTT-IGLS 938 (1057)
T ss_dssp HTTHHHHHHHHHHHHHHHTCCBCHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHH-HHHH
Confidence 334444455666777789999999999998765 5554
No 10
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=4.70 E-value=2.3e+03 Score=23.46 Aligned_cols=87 Identities=22% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHhCCcCchhhHHHHHHHHH-----HHHHHHh
Q 013023 362 KFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIA-----GVAAYSY 436 (451)
Q Consensus 362 ~~~~~l~~~gi~~~~~~~~~~~~l~~~s~lt~sv~~~lk~v~~i~ls~i~fge~ls~~~iiG~~lii~-----Gv~ly~~ 436 (451)
.....+....++.+++-+..| +........+....-.++..+....++|.+++...++|.++.++ ++.+...
T Consensus 339 ~~~~~~~~~~~lv~~vl~~~~---~s~~~~li~~~~ip~~~~~~~~~l~~~g~~ln~~sl~gl~~~iGi~vd~aIv~~~~ 415 (1057)
T 4dx5_A 339 EVVKTLVEAIILVFLVMYLFL---QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVEN 415 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHeeccccceEEeHHH
Q ss_pred hhhhHHHHHHhhhcC
Q 013023 437 IKAQMEEEKRQMKAA 451 (451)
Q Consensus 437 ~~~~~~~~~~~~~~~ 451 (451)
.+.+.+++.+..+++
T Consensus 416 ~~~~~~~~g~~~~~A 430 (1057)
T 4dx5_A 416 VERVMAEEGLPPKEA 430 (1057)
T ss_dssp HHHHHHHHCCCHHHH
T ss_pred HHHHHHhcCCCHHHH
Done!