Query 013023
Match_columns 451
No_of_seqs 258 out of 1966
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 20:47:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013023.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013023hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 12.4 3.5E+02 0.025 22.2 8.7 27 108-134 11-37 (417)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 6.3 2.3E+02 0.017 15.4 2.9 19 291-309 3-21 (27)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.9 7.1E+02 0.052 20.7 8.0 22 249-270 36-57 (248)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 5.8 8.4E+02 0.061 21.5 24.0 69 251-322 242-312 (383)
5 d1iwga8 f.35.1.1 (A:513-566,A: 4.3 8.1E+02 0.059 19.4 10.2 31 402-432 95-125 (222)
6 d1iwga7 f.35.1.1 (A:7-37,A:331 4.0 8.2E+02 0.06 19.0 9.7 49 386-434 61-109 (199)
7 d1r3jc_ f.14.1.1 (C:) Potassiu 2.2 9.8E+02 0.072 16.2 4.5 11 422-432 70-80 (103)
8 d1xmec1 f.23.9.1 (C:2-34) Bact 1.8 3.9E+02 0.028 15.1 0.9 8 235-242 18-25 (33)
9 d1y5ic1 f.21.3.1 (C:1-225) Res 1.7 7.5E+02 0.054 19.7 3.3 23 421-443 95-117 (225)
10 d1uptb_ a.193.1.1 (B:) Golgi a 1.5 5.1E+02 0.037 16.9 1.2 22 251-272 10-31 (58)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=12.42 E-value=3.5e+02 Score=22.18 Aligned_cols=27 Identities=19% Similarity=0.545 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 013023 108 LVTGFFFFMWYFLNVIFNILNKRIYNY 134 (451)
Q Consensus 108 l~~~~~~~~w~~~~~~~~i~nK~ll~~ 134 (451)
+....+++..+..+....++..++.++
T Consensus 11 ~l~~~~f~~~~~~~~~~~~l~~~l~~~ 37 (417)
T d1pv7a_ 11 MFGLFFFFYFFIMGAYFPFFPIWLHDI 37 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333444444444444444555555444
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.30 E-value=2.3e+02 Score=15.43 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013023 291 TGFISAMISNISFTYRSIY 309 (451)
Q Consensus 291 ~G~~l~l~s~l~~al~~v~ 309 (451)
.|.+..-+++++|+.|+-+
T Consensus 3 lgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHh
Confidence 5777777888888888643
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.87 E-value=7.1e+02 Score=20.69 Aligned_cols=22 Identities=5% Similarity=0.019 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhCcccChhHHHH
Q 013023 249 FFNAAASQFILGQQLPLTLWLS 270 (451)
Q Consensus 249 vf~~lls~~~l~ek~~~~~~ls 270 (451)
+.+.++.++++.+|.-+.+|+-
T Consensus 36 ~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 36 ILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp HHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHheEEEEEccCccceehhh
Confidence 4456777888888877777754
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=5.78 E-value=8.4e+02 Score=21.47 Aligned_cols=69 Identities=10% Similarity=0.001 Sum_probs=30.9
Q ss_pred HHHHHHHHhCcccChhHHHHHHHHHHHhhhhccccccccHHH-HHHHHHHH-HHHHHHHHHHHhhcCCCChHHH
Q 013023 251 NAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTG-FISAMISN-ISFTYRSIYSKKAMTDMDSTNI 322 (451)
Q Consensus 251 ~~lls~~~l~ek~~~~~~lsl~~~~~Gv~l~~~~~~~~~~~G-~~l~l~s~-l~~al~~v~~kk~~~~~~~~~l 322 (451)
+.++...+.++|.+......- .++|.+-++....-.+.++ ++...++. +++-....+.+|. +-.|+...
T Consensus 242 ~~~~~~~~~~~k~~~~~~~nG--~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~-~iDD~~~~ 312 (383)
T d1u7ga_ 242 GWIFGEWALRGLPSLLGACSG--AIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLL-RVDDPCDV 312 (383)
T ss_dssp HHHHHHHHHHSSCCHHHHHHH--HHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-CSCCGGGH
T ss_pred HHHHHHHHhcCCCCHHHHHHH--hhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhc-ccccccce
Confidence 344444456677776654432 2335444443333334443 44444444 3443444333333 43444443
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.28 E-value=8.1e+02 Score=19.41 Aligned_cols=31 Identities=16% Similarity=-0.002 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCcCchhhHHHHHHHHHHHH
Q 013023 402 VFVIGFSILAFGNKISTQTGIGTVIAIAGVA 432 (451)
Q Consensus 402 v~~i~ls~i~fge~ls~~~iiG~~lii~Gv~ 432 (451)
+...+.+..+.|.+++....+|.++.+....
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v 125 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGLSA 125 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhhhh
Confidence 3455667778899999999998887644433
No 6
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.96 E-value=8.2e+02 Score=18.98 Aligned_cols=49 Identities=22% Similarity=0.106 Sum_probs=34.2
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHhCCcCchhhHHHHHHHHHHHHHH
Q 013023 386 ERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAY 434 (451)
Q Consensus 386 ~~~s~lt~sv~~~lk~v~~i~ls~i~fge~ls~~~iiG~~lii~Gv~ly 434 (451)
+..-+.........-.+........++|.+++.....+..+.+....-|
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 4444444455555556666677778899999999999988887666544
No 7
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=2.17 E-value=9.8e+02 Score=16.23 Aligned_cols=11 Identities=27% Similarity=0.764 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 013023 422 IGTVIAIAGVA 432 (451)
Q Consensus 422 iG~~lii~Gv~ 432 (451)
+..+.++.|+.
T Consensus 70 ~~~~~~~~Gi~ 80 (103)
T d1r3jc_ 70 VAVVVMVAGIT 80 (103)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333433
No 8
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=1.79 E-value=3.9e+02 Score=15.07 Aligned_cols=8 Identities=13% Similarity=0.978 Sum_probs=4.8
Q ss_pred HHHHHhhh
Q 013023 235 FFIYWFYF 242 (451)
Q Consensus 235 ~~~~~~~~ 242 (451)
++++|+|+
T Consensus 18 ilvfw~gv 25 (33)
T d1xmec1 18 ILVFWLGV 25 (33)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 35567665
No 9
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=1.73 E-value=7.5e+02 Score=19.75 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHH
Q 013023 421 GIGTVIAIAGVAAYSYIKAQMEE 443 (451)
Q Consensus 421 iiG~~lii~Gv~ly~~~~~~~~~ 443 (451)
.++.++++.|+....++|...++
T Consensus 95 ~i~g~l~liG~~~ll~RR~~~~~ 117 (225)
T d1y5ic1 95 GASGVLCLIGGVLLLKRRLFSPR 117 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc
Confidence 34445666777666666555444
No 10
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.48 E-value=5.1e+02 Score=16.88 Aligned_cols=22 Identities=0% Similarity=-0.056 Sum_probs=16.1
Q ss_pred HHHHHHHHhCcccChhHHHHHH
Q 013023 251 NAAASQFILGQQLPLTLWLSLA 272 (451)
Q Consensus 251 ~~lls~~~l~ek~~~~~~lsl~ 272 (451)
++++.|...+|..+..++++.+
T Consensus 10 nvLfeYMmG~E~~tlaKVi~av 31 (58)
T d1uptb_ 10 KVLFEYMMGRETKTMAKVITTV 31 (58)
T ss_dssp HHHHHHHTTSSHHHHHHHHHHH
T ss_pred HHHHHHHcCcchhHHHHHHHHH
Confidence 5677888888888777776543
Done!