BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013024
         (451 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P36755|VL2_HPV27 Minor capsid protein L2 OS=Human papillomavirus type 27 GN=L2 PE=3
           SV=1
          Length = 464

 Score = 34.7 bits (78), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 392 NYIQDPDEVIDYRGPDFHEPT-PNMLDYLKEH 422
           N + DP+E I ++ PDFHEP  P+ LD +  H
Sbjct: 253 NPVYDPEETIIFQHPDFHEPPDPDFLDIVALH 284


>sp|Q0P4M4|CBPC2_XENTR Cytosolic carboxypeptidase 2 OS=Xenopus tropicalis GN=agbl2 PE=2
           SV=1
          Length = 967

 Score = 33.1 bits (74), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 18/102 (17%)

Query: 16  GPVDYSDDFITRKPNFNRFQTSFLGSFPTGILQTRLRLNNLLRRTSSVRRIKCEKNDELP 75
            P + S    +RKP     +T  + S PT  ++  + L+++  R  ++R       + LP
Sbjct: 755 APTEKSSMLYSRKPESVSMKTQMINSLPTSCVRDFMDLDHVCERQMTIRPRPSANGNRLP 814

Query: 76  EYVSVER------------------PPYYSYFDSASGQLEPA 99
             ++V +                  PP++S  D +  QL  A
Sbjct: 815 LIITVVQQSTLPPVPKGISALKQHPPPFHSILDQSGDQLTVA 856


>sp|O00220|TR10A_HUMAN Tumor necrosis factor receptor superfamily member 10A OS=Homo
           sapiens GN=TNFRSF10A PE=1 SV=3
          Length = 468

 Score = 32.0 bits (71), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 88  YFDSASGQLEPASGARASIPGEEYWPEGTASRVRAARAPEPTGESTGSPSYGKH 141
            + S++G++EP  G R ++P       G ++R RA RAP P      SP    H
Sbjct: 37  VWGSSAGRIEPRGGGRGALP-TSMGQHGPSARARAGRAPGPRPAREASPRLRVH 89


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.131    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,433,071
Number of Sequences: 539616
Number of extensions: 8095094
Number of successful extensions: 21851
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 21699
Number of HSP's gapped (non-prelim): 257
length of query: 451
length of database: 191,569,459
effective HSP length: 121
effective length of query: 330
effective length of database: 126,275,923
effective search space: 41671054590
effective search space used: 41671054590
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)