Query 013024
Match_columns 451
No_of_seqs 14 out of 16
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 08:45:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00549 Ligase_CoA: CoA-ligas 71.3 1.7 3.8E-05 39.2 0.8 13 208-220 49-61 (153)
2 PRK06091 membrane protein FdrA 60.5 2.4 5.3E-05 45.5 -0.5 14 208-221 385-398 (555)
3 PF13410 GST_C_2: Glutathione 55.8 9.7 0.00021 27.6 2.1 26 257-284 17-42 (69)
4 cd08785 CARD_CARD9-like Caspas 44.9 25 0.00054 29.4 3.1 23 414-437 20-42 (86)
5 COG0754 Gsp Glutathionylspermi 44.3 6.1 0.00013 41.2 -0.6 58 225-283 66-131 (387)
6 cd03007 PDI_a_ERp29_N PDIa fam 42.1 18 0.00038 31.5 1.9 45 377-423 69-116 (116)
7 PF07308 DUF1456: Protein of u 41.6 24 0.00052 28.4 2.5 30 412-441 16-45 (68)
8 cd01055 Nonheme_Ferritin nonhe 40.9 23 0.00049 30.0 2.4 38 311-352 25-62 (156)
9 PF10281 Ish1: Putative stress 38.5 39 0.00085 23.8 2.9 24 413-436 7-35 (38)
10 TIGR03034 conserved hypothetic 37.7 50 0.0011 33.4 4.5 61 373-442 28-91 (274)
11 PF04695 Pex14_N: Peroxisomal 37.5 31 0.00066 30.2 2.7 51 373-442 1-51 (136)
12 COG2342 Predicted extracellula 37.0 23 0.00051 36.0 2.2 96 295-398 128-256 (300)
13 PF12368 DUF3650: Protein of u 36.8 30 0.00065 24.6 2.0 19 417-437 9-27 (28)
14 PF13412 HTH_24: Winged helix- 36.7 38 0.00082 23.8 2.6 22 414-436 7-28 (48)
15 COG2008 GLY1 Threonine aldolas 36.0 13 0.00028 38.2 0.2 48 391-438 108-159 (342)
16 PF11116 DUF2624: Protein of u 32.4 45 0.00098 28.5 2.8 30 412-441 17-46 (85)
17 smart00862 Trans_reg_C Transcr 29.6 55 0.0012 24.0 2.6 24 414-437 12-36 (78)
18 cd08330 CARD_ASC_NALP1 Caspase 29.3 49 0.0011 26.9 2.5 26 412-438 17-42 (82)
19 KOG4277 Uncharacterized conser 29.0 22 0.00048 37.2 0.6 32 386-421 99-130 (468)
20 PLN02397 aspartate transaminas 27.9 58 0.0013 32.2 3.2 65 361-437 143-222 (423)
21 PF13867 SAP30_Sin3_bdg: Sin3 27.8 57 0.0012 24.9 2.4 20 325-344 28-47 (53)
22 PRK15364 pathogenicity island 26.7 37 0.00081 32.9 1.6 25 413-437 101-125 (196)
23 cd03155 CD151_like_LEL Tetrasp 26.6 77 0.0017 25.1 3.1 40 310-349 2-41 (110)
24 PF08461 HTH_12: Ribonuclease 26.4 69 0.0015 25.1 2.8 25 414-438 2-26 (66)
25 PF12339 DNAJ_related: DNA-J r 26.0 46 0.001 29.8 2.0 74 258-346 25-127 (132)
26 PF11332 DUF3134: Protein of u 25.8 25 0.00055 29.2 0.3 20 413-432 22-41 (73)
27 PF15234 LAT: Linker for activ 25.2 2E+02 0.0043 28.5 6.1 40 102-141 57-98 (230)
28 cd00299 GST_C_family Glutathio 25.1 71 0.0015 23.3 2.5 25 259-285 49-73 (100)
29 cd08810 CARD_BCL10 Caspase act 24.8 63 0.0014 27.2 2.4 25 413-438 19-43 (84)
30 smart00114 CARD Caspase recrui 24.1 70 0.0015 25.4 2.5 24 414-438 24-47 (88)
31 cd08329 CARD_BIRC2_BIRC3 Caspa 23.8 67 0.0015 26.9 2.4 25 413-438 26-50 (94)
32 PF07862 Nif11: Nitrogen fixat 23.5 52 0.0011 23.9 1.5 19 414-432 31-49 (49)
33 PRK09399 sspP acid-soluble spo 23.4 43 0.00094 26.4 1.1 13 91-103 18-30 (48)
34 PRK13475 ribulose bisphosphate 23.3 61 0.0013 34.2 2.5 36 241-276 198-233 (443)
35 cd08323 CARD_APAF1 Caspase act 23.3 77 0.0017 26.4 2.6 26 412-438 16-41 (86)
36 PRK06253 O-phosphoseryl-tRNA s 23.2 48 0.001 36.0 1.8 68 331-409 448-522 (529)
37 PRK12766 50S ribosomal protein 22.9 68 0.0015 31.6 2.6 37 195-239 101-137 (232)
38 PRK09257 aromatic amino acid a 22.3 70 0.0015 30.8 2.5 50 361-412 121-185 (396)
39 PF11387 DUF2795: Protein of u 22.3 95 0.0021 23.0 2.7 32 322-355 8-39 (44)
40 PF04340 DUF484: Protein of un 21.9 64 0.0014 29.7 2.1 50 396-445 7-61 (225)
41 PF14497 GST_C_3: Glutathione 20.8 99 0.0021 24.1 2.7 28 257-284 46-73 (99)
42 cd08326 CARD_CASP9 Caspase act 20.7 1E+02 0.0022 25.5 2.8 25 413-438 19-43 (84)
43 PF14338 Mrr_N: Mrr N-terminal 20.6 55 0.0012 26.3 1.2 30 408-437 2-31 (92)
44 cd00383 trans_reg_C Effector d 20.1 1E+02 0.0022 23.4 2.6 24 414-437 30-54 (95)
45 PF11910 NdhO: Cyanobacterial 20.0 59 0.0013 27.1 1.3 31 384-416 23-58 (67)
No 1
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=71.31 E-value=1.7 Score=39.16 Aligned_cols=13 Identities=69% Similarity=1.372 Sum_probs=7.8
Q ss_pred cCCCCCCCCcccC
Q 013024 208 LGRPHPFIDPKVR 220 (451)
Q Consensus 208 ~G~pHpfidp~~~ 220 (451)
-|||||.|||...
T Consensus 49 ~GrphPmid~~~~ 61 (153)
T PF00549_consen 49 QGRPHPMIDPSTR 61 (153)
T ss_dssp TTS--TTT-SSHH
T ss_pred ccCcCCCcCHHHH
Confidence 4999999997654
No 2
>PRK06091 membrane protein FdrA; Validated
Probab=60.51 E-value=2.4 Score=45.53 Aligned_cols=14 Identities=64% Similarity=1.417 Sum_probs=12.1
Q ss_pred cCCCCCCCCcccCC
Q 013024 208 LGRPHPFIDPKVRK 221 (451)
Q Consensus 208 ~G~pHpfidp~~~~ 221 (451)
-|||||.|||+.+.
T Consensus 385 ~GrpHPMIDp~~R~ 398 (555)
T PRK06091 385 VGRPHPMIDPTLRN 398 (555)
T ss_pred CCCCCCCcChHHHH
Confidence 59999999998764
No 3
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=55.77 E-value=9.7 Score=27.58 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=18.5
Q ss_pred HHHHHHHhhcceeeecCCCchhHHHHHH
Q 013024 257 VFLKAMAETGQIKLYGEHPTLTETALYR 284 (451)
Q Consensus 257 Vf~kAMAetGQikL~Ge~PT~tEaaL~r 284 (451)
++.+.|+..+ -|+|++||++.++|+=
T Consensus 17 ~le~~L~~~~--fl~G~~~s~aD~~l~~ 42 (69)
T PF13410_consen 17 ALEDHLADGP--FLFGDRPSLADIALAP 42 (69)
T ss_dssp HHHHHHTTSS--BTTBSS--HHHHHHHH
T ss_pred HHHHHHhhCC--CCCCCCCCHHHHHHHH
Confidence 3455666666 8999999999999874
No 4
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=44.86 E-value=25 Score=29.42 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.9
Q ss_pred hhHHHHHHhCccccHHHHHHHHhh
Q 013024 414 NMLDYLKEHGKVISREELEEILTK 437 (451)
Q Consensus 414 ~~v~~L~e~G~~IsrEel~~iL~k 437 (451)
.+++||.+.| ++|.++.++|+++
T Consensus 20 ~l~d~L~q~~-VLt~~d~EeI~~~ 42 (86)
T cd08785 20 RLTPYLRQCK-VLDEQDEEEVLSS 42 (86)
T ss_pred HHHHHHHhcC-CCCHHHHHHHhCC
Confidence 4899999999 8899999999985
No 5
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=44.26 E-value=6.1 Score=41.19 Aligned_cols=58 Identities=36% Similarity=0.610 Sum_probs=43.2
Q ss_pred CCCCcccccccccCCChhhhh----HhhhcCCChHHHHHHHHHhhcceeee---cCCCc-hhHHHHH
Q 013024 225 EPLSSEELWWNWRKSDKEQWS----RWQRRRPDVETVFLKAMAETGQIKLY---GEHPT-LTETALY 283 (451)
Q Consensus 225 ~~l~seElWWNwrkpekE~WS----rWQrR~pDvdTVf~kAMAetGQikL~---Ge~PT-~tEaaL~ 283 (451)
.-+-+|+|-=+.+=| +..|. -|++|.|-.=+=|-=||-+.|+|||+ +|.|| ++|||+.
T Consensus 66 ~~i~~d~~l~~l~Ip-~~~w~~i~~SW~~~~~sLygRfDl~~dg~g~iKLlEyNADTPTsl~Eaav~ 131 (387)
T COG0754 66 DVVKSDELLTRLAIP-KDYWDVIRNSWRRRDPSLYGRFDLAYDGDGPIKLLEYNADTPTSLYETAVF 131 (387)
T ss_pred HHHcchhhHhhcCCC-HHHHHHHHHHHhccCcceeeeeEEEecCCCCeEEEEecCCCchHHHHHHHH
Confidence 334455554344333 56676 49999999999999999999999998 79998 6788764
No 6
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=42.11 E-value=18 Score=31.49 Aligned_cols=45 Identities=20% Similarity=0.441 Sum_probs=30.9
Q ss_pred HHhhhhcCC-CcccccccccCCc--cccccCCCCCCCCChhhHHHHHHhC
Q 013024 377 QIKQIWGGD-PVYPTVNYIQDPD--EVIDYRGPDFHEPTPNMLDYLKEHG 423 (451)
Q Consensus 377 qIKQiWGGD-PVYPTiNY~QDPd--eViDYRgp~fHEPTP~~v~~L~e~G 423 (451)
.+-+=+|=+ =-||||.+-.+-+ +.++|.|++. =..+||.+++++|
T Consensus 69 ~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r--~~~~lv~~v~~~~ 116 (116)
T cd03007 69 ELGERYKLDKESYPVIYLFHGGDFENPVPYSGADV--TVDALQRFLKGNT 116 (116)
T ss_pred HHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcc--cHHHHHHHHHhcC
Confidence 344444432 2699998888653 7899999762 2456889998875
No 7
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=41.57 E-value=24 Score=28.41 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=26.9
Q ss_pred ChhhHHHHHHhCccccHHHHHHHHhhhhhH
Q 013024 412 TPNMLDYLKEHGKVISREELEEILTKEKTE 441 (451)
Q Consensus 412 TP~~v~~L~e~G~~IsrEel~~iL~kEk~E 441 (451)
.++|++.++.-|.-||++||.++|.||..+
T Consensus 16 d~~m~~if~l~~~~vs~~el~a~lrke~~~ 45 (68)
T PF07308_consen 16 DDDMIEIFALAGFEVSKAELSAWLRKEDEK 45 (68)
T ss_pred hHHHHHHHHHcCCccCHHHHHHHHCCCCCc
Confidence 468999999999999999999999997544
No 8
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=40.89 E-value=23 Score=30.01 Aligned_cols=38 Identities=13% Similarity=0.385 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcccHHHHHHHHHhhcchhhHHHHHHhhhcchh
Q 013024 311 YSEWVKAWKRDTSREAIQKHYEETGEDENTQLIEMFCHQTDR 352 (451)
Q Consensus 311 YsEWVkawKkDTSreAiqkhfeeTGEde~~QLi~Mf~hQT~r 352 (451)
|+.|.+.| ....+.++|...-.+|-.--..++.+.+.|
T Consensus 25 ~a~~~~~~----~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~ 62 (156)
T cd01055 25 MAAWFDSK----GLDGFANFFRVQAQEEREHAMKFFDYLNDR 62 (156)
T ss_pred HHHHHhhc----CChhHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 44555554 677899999999988887777777666655
No 9
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=38.48 E-value=39 Score=23.80 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=18.7
Q ss_pred hhhHHHHHHhCcccc-----HHHHHHHHh
Q 013024 413 PNMLDYLKEHGKVIS-----REELEEILT 436 (451)
Q Consensus 413 P~~v~~L~e~G~~Is-----rEel~~iL~ 436 (451)
-++-.+|++|||..+ |++|-+.+.
T Consensus 7 ~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k 35 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSAKTRDELLKLAK 35 (38)
T ss_pred HHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence 467899999999874 888876553
No 10
>TIGR03034 conserved hypothetical protein. Members of this protein family have been found in several species of gammaproteobacteria, including Yersinia pestis and Y. pseudotuberculosis, Xylella fastidiosa, and Escherichia coli UTI89. As many as five members can be found in a single genome. The function is unknown.
Probab=37.69 E-value=50 Score=33.38 Aligned_cols=61 Identities=28% Similarity=0.374 Sum_probs=48.8
Q ss_pred cCHHHHhhhhcCCCcccccccccCCccccccCCCCCCCCChhhHHH--HHHhC-ccccHHHHHHHHhhhhhHH
Q 013024 373 LREDQIKQIWGGDPVYPTVNYIQDPDEVIDYRGPDFHEPTPNMLDY--LKEHG-KVISREELEEILTKEKTEE 442 (451)
Q Consensus 373 MredqIKQiWGGDPVYPTiNY~QDPdeViDYRgp~fHEPTP~~v~~--L~e~G-~~IsrEel~~iL~kEk~Ee 442 (451)
|.|+|+|+=+|=.=|=..|| =|++..+|.|+|+-.++ ...+. ..|||+|...||=.|.+..
T Consensus 28 lte~ql~~~fgL~dvS~~vd---------Pyt~~~~~~~~~~~~~~~~~~~~~~~kis~~ec~~ILFdEfr~l 91 (274)
T TIGR03034 28 LTEQQLKSDFGLSDISAKVD---------PYTLIKYHFPGPGSINVAFFAKSSSKKISQRECVRILFNEFRHL 91 (274)
T ss_pred cCHHHHHHhcCCcccccccC---------CccccccccCCccccchhhhccCccccccHHHHHHHHHHHHHHh
Confidence 78999999899877777666 48999999999987653 44433 6999999999998887653
No 11
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=37.53 E-value=31 Score=30.25 Aligned_cols=51 Identities=31% Similarity=0.627 Sum_probs=35.6
Q ss_pred cCHHHHhhhhcCCCcccccccccCCccccccCCCCCCCCChhhHHHHHHhCccccHHHHHHHHhhhhhHH
Q 013024 373 LREDQIKQIWGGDPVYPTVNYIQDPDEVIDYRGPDFHEPTPNMLDYLKEHGKVISREELEEILTKEKTEE 442 (451)
Q Consensus 373 MredqIKQiWGGDPVYPTiNY~QDPdeViDYRgp~fHEPTP~~v~~L~e~G~~IsrEel~~iL~kEk~Ee 442 (451)
||||+|.+- +++.|||.- -..|+-.=+.||+.+| +|-+|+++.|.+-....
T Consensus 1 ~Re~li~~A---------~~FL~~p~V--------~~sp~~~k~~FL~sKG--Lt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 1 MREDLIEQA---------VKFLQDPKV--------RNSPLEKKIAFLESKG--LTEEEIDEALGRAGSPP 51 (136)
T ss_dssp -HHHHHHHH---------HHHHCTTTC--------CCS-HHHHHHHHHHCT----HHHHHHHHHHHT--S
T ss_pred CHHHHHHHH---------HHHhCCccc--------ccCCHHHHHHHHHcCC--CCHHHHHHHHHhcCCcc
Confidence 678888773 788888862 2467778899999998 69999999998755433
No 12
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=36.99 E-value=23 Score=36.03 Aligned_cols=96 Identities=24% Similarity=0.298 Sum_probs=66.7
Q ss_pred hHHHHHHHHhhcCchhHHHHHHHHhhcccHHHHHHHHHhhcchhhHHHH-------HHhhhcchhhHHhhhcCceeeecC
Q 013024 295 LKAEQERLERIGPIAYYSEWVKAWKRDTSREAIQKHYEETGEDENTQLI-------EMFCHQTDREYRIMMGNDIRIKRD 367 (451)
Q Consensus 295 l~aEqeRle~iGpiAYYsEWVkawKkDTSreAiqkhfeeTGEde~~QLi-------~Mf~hQT~rEYRiMmGTDvRI~RD 367 (451)
+++.+.||.++|=-+||-.||.+| .-++.|-++||.+-....+ +-.+.++.- +||..-.--+|.++
T Consensus 128 i~~~l~rL~d~GfdGvyLD~VD~y------~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~-~~Vi~qng~~l~d~ 200 (300)
T COG2342 128 IRSYLDRLIDQGFDGVYLDVVDAY------WYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPL-FRVIPQNGAELFDA 200 (300)
T ss_pred HHHHHHHHHHccCceEEEeeechH------HHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCc-EEEEecccHhhcCc
Confidence 568899999999999999999999 6788888888877655444 334455555 77777666667777
Q ss_pred cccc---c----------------------cCHH-HHhhhhcCCCcccccccccCCc
Q 013024 368 PLAM---R----------------------LRED-QIKQIWGGDPVYPTVNYIQDPD 398 (451)
Q Consensus 368 PLam---R----------------------Mred-qIKQiWGGDPVYPTiNY~QDPd 398 (451)
+++- | -.++ .+|--=+|.||| ||-|.-||.
T Consensus 201 ~~a~l~~~~~~~~~vE~~~~d~~~~~~~~~~~e~~Lr~l~~~G~~V~-vieY~~d~~ 256 (300)
T COG2342 201 DGAGLLPRLGFGVAVETVFYDDERPLESADTFEEYLRKLCRLGKPVY-VIEYALDPT 256 (300)
T ss_pred cccchhhccccceEEEEEEecCccCCCchhhHHHHHHHHHhcCCcEE-EEEecCCCC
Confidence 6321 1 1122 233335899999 777777765
No 13
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=36.80 E-value=30 Score=24.60 Aligned_cols=19 Identities=53% Similarity=0.851 Sum_probs=16.0
Q ss_pred HHHHHhCccccHHHHHHHHhh
Q 013024 417 DYLKEHGKVISREELEEILTK 437 (451)
Q Consensus 417 ~~L~e~G~~IsrEel~~iL~k 437 (451)
-|.++|| ||.||.++.|+.
T Consensus 9 rYV~eh~--ls~ee~~~RL~~ 27 (28)
T PF12368_consen 9 RYVKEHG--LSEEEVAERLAA 27 (28)
T ss_pred hhHHhcC--CCHHHHHHHHHc
Confidence 4889998 699999999874
No 14
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=36.72 E-value=38 Score=23.84 Aligned_cols=22 Identities=41% Similarity=0.759 Sum_probs=18.5
Q ss_pred hhHHHHHHhCccccHHHHHHHHh
Q 013024 414 NMLDYLKEHGKVISREELEEILT 436 (451)
Q Consensus 414 ~~v~~L~e~G~~IsrEel~~iL~ 436 (451)
.||.+|.++|. +|..||.+.+.
T Consensus 7 ~Il~~l~~~~~-~t~~ela~~~~ 28 (48)
T PF13412_consen 7 KILNYLRENPR-ITQKELAEKLG 28 (48)
T ss_dssp HHHHHHHHCTT-S-HHHHHHHHT
T ss_pred HHHHHHHHcCC-CCHHHHHHHhC
Confidence 58999999998 99999998875
No 15
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=36.01 E-value=13 Score=38.16 Aligned_cols=48 Identities=29% Similarity=0.317 Sum_probs=37.2
Q ss_pred cccccCCccccc-cCCCC-CCCCChhhHHHHHHh--CccccHHHHHHHHhhh
Q 013024 391 VNYIQDPDEVID-YRGPD-FHEPTPNMLDYLKEH--GKVISREELEEILTKE 438 (451)
Q Consensus 391 iNY~QDPdeViD-YRgp~-fHEPTP~~v~~L~e~--G~~IsrEel~~iL~kE 438 (451)
.|=-=+|+.|.+ +|-+| -|.|||-|+-...-. |.++|.+||++|-+=-
T Consensus 108 ~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~ 159 (342)
T COG2008 108 ADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVC 159 (342)
T ss_pred CCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHH
Confidence 344456777777 66666 789999999888877 9999999999986533
No 16
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=32.35 E-value=45 Score=28.48 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=24.7
Q ss_pred ChhhHHHHHHhCccccHHHHHHHHhhhhhH
Q 013024 412 TPNMLDYLKEHGKVISREELEEILTKEKTE 441 (451)
Q Consensus 412 TP~~v~~L~e~G~~IsrEel~~iL~kEk~E 441 (451)
+.+.+.|-+++|+-||+++.++|++==+..
T Consensus 17 ~~eLlkyskqy~i~it~~QA~~I~~~lr~k 46 (85)
T PF11116_consen 17 AKELLKYSKQYNISITKKQAEQIANILRGK 46 (85)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 357889999999999999999998754443
No 17
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=29.62 E-value=55 Score=24.00 Aligned_cols=24 Identities=42% Similarity=0.617 Sum_probs=20.2
Q ss_pred hhHHHHHHh-CccccHHHHHHHHhh
Q 013024 414 NMLDYLKEH-GKVISREELEEILTK 437 (451)
Q Consensus 414 ~~v~~L~e~-G~~IsrEel~~iL~k 437 (451)
.++.+|..| |.++|+++|.+.|=.
T Consensus 12 ~lL~~L~~~~~~~vs~~~l~~~lw~ 36 (78)
T smart00862 12 RLLELLLRNPGRVVSREELLEAVWG 36 (78)
T ss_pred HHHHHHHhCCCCccCHHHHHHHHcC
Confidence 478888887 899999999998754
No 18
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=29.35 E-value=49 Score=26.90 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.3
Q ss_pred ChhhHHHHHHhCccccHHHHHHHHhhh
Q 013024 412 TPNMLDYLKEHGKVISREELEEILTKE 438 (451)
Q Consensus 412 TP~~v~~L~e~G~~IsrEel~~iL~kE 438 (451)
+-.|+|.|.+.| +||.|+.++|.++.
T Consensus 17 v~~ilD~L~~~~-Vit~e~~~~I~a~~ 42 (82)
T cd08330 17 VDPILDKLHGKK-VITQEQYSEVRAEK 42 (82)
T ss_pred HHHHHHHHHHCC-CCCHHHHHHHHcCC
Confidence 346899999999 89999999999854
No 19
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=28.98 E-value=22 Score=37.22 Aligned_cols=32 Identities=28% Similarity=0.685 Sum_probs=22.5
Q ss_pred CcccccccccCCccccccCCCCCCCCChhhHHHHHH
Q 013024 386 PVYPTVNYIQDPDEVIDYRGPDFHEPTPNMLDYLKE 421 (451)
Q Consensus 386 PVYPTiNY~QDPdeViDYRgp~fHEPTP~~v~~L~e 421 (451)
--||||-+... |++|||||+.=. -+++.+-+.
T Consensus 99 qGYPTIk~~kg-d~a~dYRG~R~K---d~iieFAhR 130 (468)
T KOG4277|consen 99 QGYPTIKFFKG-DHAIDYRGGREK---DAIIEFAHR 130 (468)
T ss_pred CCCceEEEecC-CeeeecCCCccH---HHHHHHHHh
Confidence 34999998764 899999998633 245555443
No 20
>PLN02397 aspartate transaminase
Probab=27.93 E-value=58 Score=32.24 Aligned_cols=65 Identities=18% Similarity=-0.014 Sum_probs=35.6
Q ss_pred ceeeecCccccccCHHHHhhhhcCCCcc-cc---cccccCCccc----ccc-------CCCCCCCCChhhHHHHHHhCcc
Q 013024 361 DIRIKRDPLAMRLREDQIKQIWGGDPVY-PT---VNYIQDPDEV----IDY-------RGPDFHEPTPNMLDYLKEHGKV 425 (451)
Q Consensus 361 DvRI~RDPLamRMredqIKQiWGGDPVY-PT---iNY~QDPdeV----iDY-------Rgp~fHEPTP~~v~~L~e~G~~ 425 (451)
|.=|.-||-=.- =-.+-+..|+.+|+ |. -||.-|++.+ ... =.+++|.|| |.+
T Consensus 143 d~Vlv~~P~y~~--y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPT----------G~v 210 (423)
T PLN02397 143 STIYIPNPTWGN--HHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPT----------GVD 210 (423)
T ss_pred CEEEEeCCCchh--HHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCC----------CCC
Confidence 444445553211 12344466777764 22 2455566632 222 126789998 677
Q ss_pred ccHHHHHHHHhh
Q 013024 426 ISREELEEILTK 437 (451)
Q Consensus 426 IsrEel~~iL~k 437 (451)
+|+|++++|++-
T Consensus 211 ~s~e~l~~i~~~ 222 (423)
T PLN02397 211 PTPEQWEQISDL 222 (423)
T ss_pred CCHHHHHHHHHH
Confidence 777777777653
No 21
>PF13867 SAP30_Sin3_bdg: Sin3 binding region of histone deacetylase complex subunit SAP30; PDB: 2LD7_A.
Probab=27.80 E-value=57 Score=24.86 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=12.7
Q ss_pred HHHHHHHHhhcchhhHHHHH
Q 013024 325 EAIQKHYEETGEDENTQLIE 344 (451)
Q Consensus 325 eAiqkhfeeTGEde~~QLi~ 344 (451)
.||++||...+=+|++-|..
T Consensus 28 ~~V~kHF~s~~v~E~evI~~ 47 (53)
T PF13867_consen 28 NAVRKHFNSQPVDENEVIAN 47 (53)
T ss_dssp HHHHHHHTT----HHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHH
Confidence 58999999999998875543
No 22
>PRK15364 pathogenicity island 2 effector protein SseB; Provisional
Probab=26.75 E-value=37 Score=32.91 Aligned_cols=25 Identities=16% Similarity=0.608 Sum_probs=17.4
Q ss_pred hhhHHHHHHhCccccHHHHHHHHhh
Q 013024 413 PNMLDYLKEHGKVISREELEEILTK 437 (451)
Q Consensus 413 P~~v~~L~e~G~~IsrEel~~iL~k 437 (451)
+++++|+++|||.|+---++.-|++
T Consensus 101 ddVI~YmrdNgI~VdG~sid~Yl~k 125 (196)
T PRK15364 101 EDVIKYMRDNGILIDGMTIDDYMAK 125 (196)
T ss_pred HHHHHHHHHcCceecccchHHHHhc
Confidence 3566778888888877666666644
No 23
>cd03155 CD151_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and
Probab=26.61 E-value=77 Score=25.13 Aligned_cols=40 Identities=15% Similarity=0.347 Sum_probs=32.2
Q ss_pred hHHHHHHHHhhcccHHHHHHHHHhhcchhhHHHHHHhhhc
Q 013024 310 YYSEWVKAWKRDTSREAIQKHYEETGEDENTQLIEMFCHQ 349 (451)
Q Consensus 310 YYsEWVkawKkDTSreAiqkhfeeTGEde~~QLi~Mf~hQ 349 (451)
.|.+.|+.+-+++-+.+|++++...+....+.+++.+|.+
T Consensus 2 v~~~~~~~~i~~~l~~~i~~~y~~~~~~~~~~~~d~iQ~~ 41 (110)
T cd03155 2 TYYQQLEDELKESLKRTMQENYGQSGEEALTLTVDELQQE 41 (110)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Confidence 4778899998999999999888765556778888888764
No 24
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=26.39 E-value=69 Score=25.13 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=22.4
Q ss_pred hhHHHHHHhCccccHHHHHHHHhhh
Q 013024 414 NMLDYLKEHGKVISREELEEILTKE 438 (451)
Q Consensus 414 ~~v~~L~e~G~~IsrEel~~iL~kE 438 (451)
.||.+|.+++..+++.+|.+-|...
T Consensus 2 ~IL~~L~~~~~P~g~~~l~~~L~~~ 26 (66)
T PF08461_consen 2 FILRILAESDKPLGRKQLAEELKLR 26 (66)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHhc
Confidence 4899999999999999999998765
No 25
>PF12339 DNAJ_related: DNA-J related protein ; InterPro: IPR021059 This domain family is approximately 130 amino acids in length and contains a conserved YYLD sequence motif. The proteins have a C-terminal DNA-J domain PF00226 from PFAM and most of the sequences are annotated as DNA-J related proteins, other annotations include: DnaJ-class molecular chaperon and formate dehydrogenase; but there is currently no publications to support these annotations.
Probab=25.99 E-value=46 Score=29.82 Aligned_cols=74 Identities=35% Similarity=0.614 Sum_probs=44.3
Q ss_pred HHHHHHhhcceeeecCCCchhHH-----------HHHHHHhhhhHHH----------HhHH----HHH---HHHhhcCc-
Q 013024 258 FLKAMAETGQIKLYGEHPTLTET-----------ALYRARRHLFKEE----------RLKA----EQE---RLERIGPI- 308 (451)
Q Consensus 258 f~kAMAetGQikL~Ge~PT~tEa-----------aL~rARrhl~kEE----------Rl~a----Eqe---Rle~iGpi- 308 (451)
.++++.+.|.+ +|+.-+...+- ||||-|.+|+.+. ||.. .+. -+...-|.
T Consensus 25 L~~~L~~~~~~-~f~~l~~~~~~~LFk~hFLl~naLY~Lq~~L~~~~~~L~I~~l~I~L~p~~~~~~~~~~~~~~~d~Lr 103 (132)
T PF12339_consen 25 LISQLQEQGYI-LFPELDLDPPLDLFKRHFLLFNALYQLQEQLRPEGEWLQISALDIRLMPYPSASQSSNNALDEDDPLR 103 (132)
T ss_pred HHHHHhhCcCc-cCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHccCCeEEEEeEEEEEeecccccccccccccccchHH
Confidence 56677777776 55555544444 5566666655554 1110 000 01122222
Q ss_pred hhHHHHHHHHhhcccHHHHHHHHHhhcchhhHHHHHHh
Q 013024 309 AYYSEWVKAWKRDTSREAIQKHYEETGEDENTQLIEMF 346 (451)
Q Consensus 309 AYYsEWVkawKkDTSreAiqkhfeeTGEde~~QLi~Mf 346 (451)
+||-.| .+|++|.|+++.+||+-|
T Consensus 104 ~YYLDw--------------~n~~~t~~~~V~~LL~~F 127 (132)
T PF12339_consen 104 EYYLDW--------------QNYEETSEAEVERLLNSF 127 (132)
T ss_pred HHHccH--------------HHHhhcCHHHHHHHHHHH
Confidence 599988 578999999999999987
No 26
>PF11332 DUF3134: Protein of unknown function (DUF3134); InterPro: IPR021481 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=25.85 E-value=25 Score=29.20 Aligned_cols=20 Identities=35% Similarity=0.785 Sum_probs=18.2
Q ss_pred hhhHHHHHHhCccccHHHHH
Q 013024 413 PNMLDYLKEHGKVISREELE 432 (451)
Q Consensus 413 P~~v~~L~e~G~~IsrEel~ 432 (451)
+.||+.|...|+||.|+..+
T Consensus 22 ~SlLdWLe~tGRLi~rd~~e 41 (73)
T PF11332_consen 22 SSLLDWLESTGRLIARDPQE 41 (73)
T ss_pred cHHHHHHHHcCCccccCccc
Confidence 67999999999999998766
No 27
>PF15234 LAT: Linker for activation of T-cells
Probab=25.24 E-value=2e+02 Score=28.53 Aligned_cols=40 Identities=28% Similarity=0.414 Sum_probs=27.6
Q ss_pred CCCCCCCC--CCCCcchhhhhhhccCCCCCCCCCCCCCCCCC
Q 013024 102 ARASIPGE--EYWPEGTASRVRAARAPEPTGESTGSPSYGKH 141 (451)
Q Consensus 102 aRAsiP~~--eyWpegt~~rVRaarAp~P~ges~g~ps~G~~ 141 (451)
+-|+-|.. -|||-.--+-+--.|.|.|.|-|--+||.-+.
T Consensus 57 t~~pwp~avts~pplsqPDLLpIPRSPQp~ggShrmpSSrqd 98 (230)
T PF15234_consen 57 TLAPWPPAVTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQD 98 (230)
T ss_pred CCCCCCcccccCCCCCCcccccCCCCCCCCCCcccCcccccC
Confidence 44455554 67777777777778889999888777764333
No 28
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=25.07 E-value=71 Score=23.30 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=18.0
Q ss_pred HHHHHhhcceeeecCCCchhHHHHHHH
Q 013024 259 LKAMAETGQIKLYGEHPTLTETALYRA 285 (451)
Q Consensus 259 ~kAMAetGQikL~Ge~PT~tEaaL~rA 285 (451)
.+-+++.+- +.|++||+++.+|+=.
T Consensus 49 ~~~L~~~~~--~~g~~~t~aDi~~~~~ 73 (100)
T cd00299 49 EKLLAGRPY--LAGDRFSLADIALAPV 73 (100)
T ss_pred HHHHccCCC--CCCCCcCHHHHHHHHH
Confidence 344444443 7999999999998754
No 29
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=24.79 E-value=63 Score=27.16 Aligned_cols=25 Identities=28% Similarity=0.620 Sum_probs=21.6
Q ss_pred hhhHHHHHHhCccccHHHHHHHHhhh
Q 013024 413 PNMLDYLKEHGKVISREELEEILTKE 438 (451)
Q Consensus 413 P~~v~~L~e~G~~IsrEel~~iL~kE 438 (451)
-.+++||...| ++|.++.++|.++.
T Consensus 19 ~~l~d~L~s~~-ILt~~d~EeI~~~~ 43 (84)
T cd08810 19 DRHFDYLRSKR-ILTRDDCEEISCRT 43 (84)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHhccC
Confidence 35899999999 88999999999843
No 30
>smart00114 CARD Caspase recruitment domain. Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.
Probab=24.07 E-value=70 Score=25.37 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=20.4
Q ss_pred hhHHHHHHhCccccHHHHHHHHhhh
Q 013024 414 NMLDYLKEHGKVISREELEEILTKE 438 (451)
Q Consensus 414 ~~v~~L~e~G~~IsrEel~~iL~kE 438 (451)
.|+++|.++| +||-+|.++|-+..
T Consensus 24 ~vld~L~~~~-Vlt~~e~e~i~~~~ 47 (88)
T smart00114 24 GLLDYLVEKN-VLTEKEIEAIKAAT 47 (88)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHccC
Confidence 6999999999 78999999887643
No 31
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=23.80 E-value=67 Score=26.85 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=21.5
Q ss_pred hhhHHHHHHhCccccHHHHHHHHhhh
Q 013024 413 PNMLDYLKEHGKVISREELEEILTKE 438 (451)
Q Consensus 413 P~~v~~L~e~G~~IsrEel~~iL~kE 438 (451)
-.|++.|.++| +||.+|.+.|-++.
T Consensus 26 ~~ilD~Ll~~~-Vlt~ee~e~I~~~~ 50 (94)
T cd08329 26 LPILDSLLSAN-VITEQEYDVIKQKT 50 (94)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHcCC
Confidence 45899999999 89999999998754
No 32
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=23.47 E-value=52 Score=23.86 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=16.2
Q ss_pred hhHHHHHHhCccccHHHHH
Q 013024 414 NMLDYLKEHGKVISREELE 432 (451)
Q Consensus 414 ~~v~~L~e~G~~IsrEel~ 432 (451)
+++.+.+++|.-||.+||+
T Consensus 31 e~~~lA~~~Gy~ft~~el~ 49 (49)
T PF07862_consen 31 EVVALAREAGYDFTEEELE 49 (49)
T ss_pred HHHHHHHHcCCCCCHHHhC
Confidence 4677899999999999984
No 33
>PRK09399 sspP acid-soluble spore protein P; Provisional
Probab=23.41 E-value=43 Score=26.40 Aligned_cols=13 Identities=46% Similarity=0.767 Sum_probs=10.6
Q ss_pred CCCCCcccCCCCC
Q 013024 91 SASGQLEPASGAR 103 (451)
Q Consensus 91 stsGqlePasGaR 103 (451)
-++||+||-||.-
T Consensus 18 ~~~gQPEPLSGSk 30 (48)
T PRK09399 18 ENPGQPEPLSGSK 30 (48)
T ss_pred CCCCCCCCCCcch
Confidence 3689999999963
No 34
>PRK13475 ribulose bisphosphate carboxylase; Provisional
Probab=23.32 E-value=61 Score=34.25 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=32.7
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCc
Q 013024 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPT 276 (451)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQikL~Ge~PT 276 (451)
+..|++|..|-+-|--++.+|.+|||+.|+|==..|
T Consensus 198 ~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~y~~NiT 233 (443)
T PRK13475 198 NQVFAPLKKTVPLVADAMKRAQDETGEAKLFSANIT 233 (443)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhCCceeEeccCC
Confidence 356999999999999999999999999999987777
No 35
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=23.29 E-value=77 Score=26.41 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=22.3
Q ss_pred ChhhHHHHHHhCccccHHHHHHHHhhh
Q 013024 412 TPNMLDYLKEHGKVISREELEEILTKE 438 (451)
Q Consensus 412 TP~~v~~L~e~G~~IsrEel~~iL~kE 438 (451)
+..|+++|-+.| +||-+|.++|.++.
T Consensus 16 v~~ild~L~~~g-vlt~~~~e~I~~~~ 41 (86)
T cd08323 16 TSYIMDHMISDG-VLTLDEEEKVKSKA 41 (86)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHcCC
Confidence 356999999999 88999999998754
No 36
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=23.21 E-value=48 Score=35.97 Aligned_cols=68 Identities=28% Similarity=0.514 Sum_probs=37.9
Q ss_pred HHhhcchhhHHHHHHhhhcchhhHHhhh--c-----CceeeecCccccccCHHHHhhhhcCCCcccccccccCCcccccc
Q 013024 331 YEETGEDENTQLIEMFCHQTDREYRIMM--G-----NDIRIKRDPLAMRLREDQIKQIWGGDPVYPTVNYIQDPDEVIDY 403 (451)
Q Consensus 331 feeTGEde~~QLi~Mf~hQT~rEYRiMm--G-----TDvRI~RDPLamRMredqIKQiWGGDPVYPTiNY~QDPdeViDY 403 (451)
+.+.|---.-..|+-|+.+-.++--=+. | +-|||.|-|-.+-+.=|.+- ..||++-+..||.
T Consensus 448 ~~~~g~~t~i~~~~~~~~~~~~~iee~~~~~~~~~~~~~~~~~~~~~in~~~~~~~-----------~~~i~~~~~~id~ 516 (529)
T PRK06253 448 VKEEGVSTGIRYIDAFAAKAAAKIEEAAVSGEGEFKVRVRIVRSPSDINLKIDELA-----------LRYITGKNKKIDV 516 (529)
T ss_pred HHhcCCCcCcchHHHHHHHHHHHHHHHHhcCCCceEEEEEEecCchhceeeecHHH-----------HHHHhccCceEEe
Confidence 3444444445566666666554332221 1 23455555544333333322 2488999999999
Q ss_pred CCCCCC
Q 013024 404 RGPDFH 409 (451)
Q Consensus 404 Rgp~fH 409 (451)
|||-|-
T Consensus 517 rgpvf~ 522 (529)
T PRK06253 517 RGPVFL 522 (529)
T ss_pred ecceEE
Confidence 999873
No 37
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=22.90 E-value=68 Score=31.63 Aligned_cols=37 Identities=19% Similarity=0.408 Sum_probs=19.3
Q ss_pred ccccchhHHHhhhcCCCCCCCCcccCCCCCCCCCcccccccccCC
Q 013024 195 KAEGETEYELDKKLGRPHPFIDPKVRKPIEEPLSSEELWWNWRKS 239 (451)
Q Consensus 195 ~eEe~~~ye~dkk~G~pHpfidp~~~~~~e~~l~seElWWNwrkp 239 (451)
++|+---+.+-++.+.|. |+....-+-. .|.+ +||||
T Consensus 101 ~~~~~rll~~r~~~~~p~-F~R~~~~r~~--r~~~-----sWRkP 137 (232)
T PRK12766 101 SDEEARLLTQRRREGKPQ-FNRQDYHKKK--RTPT-----SWRRP 137 (232)
T ss_pred CHHHHHHHHHHHhccCCC-eecccccccc--cccc-----cCCCC
Confidence 344444445555556666 7766543221 1222 79999
No 38
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=22.32 E-value=70 Score=30.81 Aligned_cols=50 Identities=22% Similarity=0.111 Sum_probs=25.7
Q ss_pred ceeeecCccccccCHHHHhhhhcCCCc-cccc---ccccCCccccc-----------cCCCCCCCCC
Q 013024 361 DIRIKRDPLAMRLREDQIKQIWGGDPV-YPTV---NYIQDPDEVID-----------YRGPDFHEPT 412 (451)
Q Consensus 361 DvRI~RDPLamRMredqIKQiWGGDPV-YPTi---NY~QDPdeViD-----------YRgp~fHEPT 412 (451)
|.=+.-+|-=--. ..+-+..|+.+| ||+. ++--|+|++.. |=.|++|.||
T Consensus 121 d~Vlv~~P~y~~~--~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPT 185 (396)
T PRK09257 121 AKVWVSDPTWPNH--RAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPT 185 (396)
T ss_pred CeEEECCCCcccH--HHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCC
Confidence 4444555542221 234445677766 4431 34445555432 2238899998
No 39
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=22.27 E-value=95 Score=22.96 Aligned_cols=32 Identities=19% Similarity=0.532 Sum_probs=27.1
Q ss_pred ccHHHHHHHHHhhcchhhHHHHHHhhhcchhhHH
Q 013024 322 TSREAIQKHYEETGEDENTQLIEMFCHQTDREYR 355 (451)
Q Consensus 322 TSreAiqkhfeeTGEde~~QLi~Mf~hQT~rEYR 355 (451)
.+|+.|-+|.+..|-+. ++|++|.+--+++|.
T Consensus 8 a~k~~Lv~~A~~~gA~~--~vl~~L~~lP~~~Y~ 39 (44)
T PF11387_consen 8 ADKDELVRHARRNGAPD--DVLDALERLPDREYE 39 (44)
T ss_pred CCHHHHHHHHHHcCCCH--HHHHHHHHCCccCCC
Confidence 57899999999999877 688888888888885
No 40
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=21.90 E-value=64 Score=29.70 Aligned_cols=50 Identities=30% Similarity=0.509 Sum_probs=15.1
Q ss_pred CCcccccc--CCCCCCCCChhhHHHH---HHhCccccHHHHHHHHhhhhhHHHHh
Q 013024 396 DPDEVIDY--RGPDFHEPTPNMLDYL---KEHGKVISREELEEILTKEKTEEVEA 445 (451)
Q Consensus 396 DPdeViDY--Rgp~fHEPTP~~v~~L---~e~G~~IsrEel~~iL~kEk~Ee~E~ 445 (451)
|++.|++| .+|||=.=-|+++.-| -.+|..||=-|-+-..-+++..+++.
T Consensus 7 ~~~~V~~yL~~~PdFf~~~~~ll~~l~~ph~~~~avSL~erQ~~~LR~~~~~L~~ 61 (225)
T PF04340_consen 7 DAEDVAAYLRQHPDFFERHPELLAELRLPHPSGGAVSLVERQLERLRERNRQLEE 61 (225)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCcHHHHhCHHHHHHcCCCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 67899999 7999999999999888 46788898777777666777666653
No 41
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=20.75 E-value=99 Score=24.06 Aligned_cols=28 Identities=36% Similarity=0.592 Sum_probs=19.7
Q ss_pred HHHHHHHhhcceeeecCCCchhHHHHHH
Q 013024 257 VFLKAMAETGQIKLYGEHPTLTETALYR 284 (451)
Q Consensus 257 Vf~kAMAetGQikL~Ge~PT~tEaaL~r 284 (451)
.+.+.+++.+.=-|+|++||++-++++-
T Consensus 46 ~l~~~L~~~~~~~l~G~~~T~AD~~v~~ 73 (99)
T PF14497_consen 46 ILEKHLAERGGDFLVGDKPTLADIAVFG 73 (99)
T ss_dssp HHHHHHHHTSSSSSSSSS--HHHHHHHH
T ss_pred HHHHHHHcCCCeeecCCCCCHHHHHHHH
Confidence 3566677655338999999999999876
No 42
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=20.70 E-value=1e+02 Score=25.49 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.1
Q ss_pred hhhHHHHHHhCccccHHHHHHHHhhh
Q 013024 413 PNMLDYLKEHGKVISREELEEILTKE 438 (451)
Q Consensus 413 P~~v~~L~e~G~~IsrEel~~iL~kE 438 (451)
..|+++|.+.| ++|.++.+.|.+..
T Consensus 19 ~~v~~~L~~~~-Vlt~~~~e~I~~~~ 43 (84)
T cd08326 19 KYLWDHLLSRG-VFTPDMIEEIQAAG 43 (84)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHcCC
Confidence 35899999999 78999999998754
No 43
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=20.56 E-value=55 Score=26.33 Aligned_cols=30 Identities=33% Similarity=0.536 Sum_probs=24.8
Q ss_pred CCCCChhhHHHHHHhCccccHHHHHHHHhh
Q 013024 408 FHEPTPNMLDYLKEHGKVISREELEEILTK 437 (451)
Q Consensus 408 fHEPTP~~v~~L~e~G~~IsrEel~~iL~k 437 (451)
||+=.+-+|..|+++|..+++.|+.+.+++
T Consensus 2 ~~~~~~piL~~L~~~g~~~~~~ei~~~v~~ 31 (92)
T PF14338_consen 2 YDELMPPILEALKDLGGSASRKEIYERVAE 31 (92)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 344456789999999999999999988865
No 44
>cd00383 trans_reg_C Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.
Probab=20.15 E-value=1e+02 Score=23.43 Aligned_cols=24 Identities=38% Similarity=0.619 Sum_probs=18.9
Q ss_pred hhHHHHHHh-CccccHHHHHHHHhh
Q 013024 414 NMLDYLKEH-GKVISREELEEILTK 437 (451)
Q Consensus 414 ~~v~~L~e~-G~~IsrEel~~iL~k 437 (451)
.+|.+|.++ |.++||++|.+.|-.
T Consensus 30 ~lL~~L~~~~~~~vs~~~l~~~lw~ 54 (95)
T cd00383 30 ELLELLARNPGRVLSREQLLEAVWG 54 (95)
T ss_pred HHHHHHHhCCCCcCCHHHHHHHhcC
Confidence 467766665 999999999988743
No 45
>PF11910 NdhO: Cyanobacterial and plant NDH-1 subunit O; InterPro: IPR020905 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit O. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0005886 plasma membrane
Probab=20.01 E-value=59 Score=27.11 Aligned_cols=31 Identities=45% Similarity=0.924 Sum_probs=24.7
Q ss_pred CCCcccccccc-cCCccccccCCC----CCCCCChhhH
Q 013024 384 GDPVYPTVNYI-QDPDEVIDYRGP----DFHEPTPNML 416 (451)
Q Consensus 384 GDPVYPTiNY~-QDPdeViDYRgp----~fHEPTP~~v 416 (451)
-||-+| .|+ .+|-||+|-+|. -|--||||+-
T Consensus 23 SD~~~P--~Yife~~GEvl~ikgdYa~vr~~~PtP~vW 58 (67)
T PF11910_consen 23 SDPRPP--SYIFEGPGEVLDIKGDYAQVRFRVPTPDVW 58 (67)
T ss_pred cCCCCC--cceecCCCeEEEecCCEEEEEecCCCCchh
Confidence 477888 554 579999998876 5899999984
Done!