Query 013024
Match_columns 451
No_of_seqs 14 out of 16
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 20:48:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013024.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013024hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fk4_A Rubisco-like protein; s 44.5 4.7 0.00016 40.3 -0.0 36 241-276 181-216 (414)
2 2w84_A Peroxisomal membrane pr 42.9 22 0.00074 28.5 3.6 49 371-438 11-59 (70)
3 3nwr_A A rubisco-like protein; 34.7 14 0.00048 37.1 1.7 36 241-276 202-237 (432)
4 5rub_A Rubisco (ribulose-1,5-b 34.2 14 0.00047 37.9 1.5 45 241-285 222-268 (490)
5 3qfw_A Ribulose-1,5-bisphospha 31.9 23 0.00077 35.1 2.6 37 241-277 171-207 (378)
6 4f0h_A Ribulose bisphosphate c 31.5 15 0.00052 37.5 1.3 46 241-286 217-264 (493)
7 1r9d_A Glycerol dehydratase; r 30.7 52 0.0018 35.2 5.2 112 278-398 212-350 (787)
8 1wdd_A Ribulose bisphosphate c 29.1 17 0.00057 37.1 1.1 37 241-277 208-244 (477)
9 3n5o_A Glutathione transferase 28.2 1.1E+02 0.0039 25.0 5.9 69 257-339 160-230 (235)
10 2nu8_A Succinyl-COA ligase [AD 28.1 21 0.00071 32.7 1.5 51 383-436 48-109 (288)
11 1opc_A OMPR, OMPRC; transcript 28.0 35 0.0012 26.2 2.6 22 414-435 38-60 (110)
12 1bwv_A Rubisco, protein (ribul 27.8 19 0.00066 36.9 1.3 37 241-277 217-253 (493)
13 2oem_A 2,3-diketo-5-methylthio 27.4 15 0.00051 36.7 0.4 36 241-276 180-215 (413)
14 2pmu_A Response regulator PHOP 27.1 43 0.0015 26.0 2.9 22 414-435 41-63 (110)
15 2hqn_A Putative transcriptiona 26.7 39 0.0013 25.9 2.6 22 414-435 36-58 (109)
16 2du7_A O-phosphoseryl-tRNA syn 26.7 17 0.00057 37.7 0.7 19 392-410 525-543 (549)
17 2qyg_A Ribulose bisphosphate c 26.1 18 0.00062 36.6 0.8 36 241-276 225-260 (452)
18 2yv2_A Succinyl-COA synthetase 26.0 9.1 0.00031 35.4 -1.3 40 383-425 54-97 (297)
19 1ykw_A Rubisco-like protein; b 25.2 19 0.00064 36.3 0.7 36 241-276 205-240 (435)
20 3rjp_A COVR; winged helix-turn 24.6 53 0.0018 24.5 2.9 23 414-436 29-52 (96)
21 2d69_A Ribulose bisphosphate c 23.9 36 0.0012 34.2 2.4 37 241-277 193-229 (430)
22 2zvi_A 2,3-diketo-5-methylthio 23.8 19 0.00066 36.1 0.4 36 241-276 194-229 (425)
23 3kdn_A Rubisco, ribulose bisph 22.8 32 0.0011 34.7 1.8 37 241-277 196-232 (444)
24 2p1h_A APAF-1, apoptotic prote 22.7 52 0.0018 25.0 2.6 24 413-437 25-48 (94)
25 1gxq_A PHOB, phosphate regulon 22.6 55 0.0019 25.0 2.7 22 414-435 38-60 (106)
26 2yv1_A Succinyl-COA ligase [AD 21.3 11 0.00037 34.8 -1.7 40 383-425 54-96 (294)
27 3zq7_A KDP operon transcriptio 20.2 63 0.0022 24.3 2.6 23 414-436 35-58 (102)
28 2zxj_A Transcriptional regulat 20.2 62 0.0021 26.4 2.7 23 414-436 43-66 (120)
No 1
>3fk4_A Rubisco-like protein; structural genomics, target 9463A, PSI-2, protein structure initiative; 2.00A {Bacillus cereus atcc 14579}
Probab=44.48 E-value=4.7 Score=40.30 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=32.4
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCc
Q 013024 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPT 276 (451)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQikL~Ge~PT 276 (451)
+.+|++|..|.+-|--++.+|.+|||++|+|==..|
T Consensus 181 ~q~f~p~~eRv~~v~eai~rA~~eTGe~k~y~~NiT 216 (414)
T 3fk4_A 181 ENALTPLTKRIVSGKEVLQSVYETYGHKTLYAVNLT 216 (414)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhhCCcceEEeEcC
Confidence 456999999999999999999999999999976666
No 2
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=42.91 E-value=22 Score=28.45 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=41.2
Q ss_pred cccCHHHHhhhhcCCCcccccccccCCccccccCCCCCCCCChhhHHHHHHhCccccHHHHHHHHhhh
Q 013024 371 MRLREDQIKQIWGGDPVYPTVNYIQDPDEVIDYRGPDFHEPTPNMLDYLKEHGKVISREELEEILTKE 438 (451)
Q Consensus 371 mRMredqIKQiWGGDPVYPTiNY~QDPdeViDYRgp~fHEPTP~~v~~L~e~G~~IsrEel~~iL~kE 438 (451)
|-+||+.|.+- ++|.|||.-- +.|.-.=+.||+.+| +|-+|+++.|.+-
T Consensus 11 ~~~Re~li~~A---------v~FLqdp~V~--------~sp~~~K~~FL~sKG--Lt~eEI~~Al~ra 59 (70)
T 2w84_A 11 VLPREPLIATA---------VKFLQNSRVR--------QSPLATRRAFLKKKG--LTDEEIDMAFQQS 59 (70)
T ss_dssp SCCCHHHHHHH---------HHHHCSTTGG--------GSCHHHHHHHHHHTT--CCHHHHHHHHHHH
T ss_pred CCchHHHHHHH---------HHHhCChhhh--------hCCHHHHHHHHHHcC--CCHHHHHHHHHHc
Confidence 56899999985 7899999742 478888999999998 5999999999873
No 3
>3nwr_A A rubisco-like protein; lyase; HET: KCX; 1.50A {Burkholderia fungorum}
Probab=34.72 E-value=14 Score=37.14 Aligned_cols=36 Identities=11% Similarity=0.033 Sum_probs=33.0
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCc
Q 013024 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPT 276 (451)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQikL~Ge~PT 276 (451)
+.+|++|..|.+-|--++.+|.+|||++|+|==..|
T Consensus 202 ~q~f~p~~eRv~~v~eai~rA~~eTGe~k~y~~NiT 237 (432)
T 3nwr_A 202 NPAHAPLAERVRAVMSEVRRYRERSGRPVMVAFNIT 237 (432)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhCCcceEEeecC
Confidence 467999999999999999999999999999987777
No 4
>5rub_A Rubisco (ribulose-1,5-bisphosphate carboxylase(slash)oxygenase); lyase(carbon-carbon); 1.70A {Rhodospirillum rubrum} SCOP: c.1.14.1 d.58.9.1 PDB: 1rus_A 2rus_A 9rub_A* 1rba_A
Probab=34.23 E-value=14 Score=37.87 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=37.3
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCch--hHHHHHHH
Q 013024 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPTL--TETALYRA 285 (451)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQikL~Ge~PT~--tEaaL~rA 285 (451)
..++++|..|.+-|--++.+|-+|||++|+|==..|- .|.-+.||
T Consensus 222 sQpf~p~~eR~~~v~eAi~rA~~eTGe~k~y~~NITa~~~~eM~~RA 268 (490)
T 5rub_A 222 NQPFAPLRDTIALVADAMRRAQDETGEAKLFSANITADDPFEIIARG 268 (490)
T ss_dssp CBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCCSSHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhhCCceeEEeccCCCCHHHHHHHH
Confidence 4679999999999999999999999999999877774 35444444
No 5
>3qfw_A Ribulose-1,5-bisphosphate carboxylase/oxygenase L subunit; structural genomics, PSI-2, protein structure initiative; 1.79A {Rhodopseudomonas palustris}
Probab=31.92 E-value=23 Score=35.11 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=33.7
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCch
Q 013024 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPTL 277 (451)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQikL~Ge~PT~ 277 (451)
..+|++|..|.+-|--++.+|-+|||++|+|=-..|-
T Consensus 171 ~qpf~p~~eR~~~~~eai~ra~~eTGe~k~y~~NiTa 207 (378)
T 3qfw_A 171 DQAFSPFAERAAAVGKAVREANAARGGRTLYAPNISG 207 (378)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHHHHHTCCCEEECBCCS
T ss_pred CCCcccHHHHHHHHHHHHHHHHHhhCCccEEEeecCC
Confidence 4579999999999999999999999999999888885
No 6
>4f0h_A Ribulose bisphosphate carboxylase large chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_A 4f0m_A 1bwv_A* 1iwa_A 1bxn_A
Probab=31.52 E-value=15 Score=37.55 Aligned_cols=46 Identities=30% Similarity=0.288 Sum_probs=37.4
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCch--hHHHHHHHH
Q 013024 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPTL--TETALYRAR 286 (451)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQikL~Ge~PT~--tEaaL~rAR 286 (451)
+.+|++|..|.+-|--++.+|.+|||++|+|==..|- .+.-+.||+
T Consensus 217 ~Qpf~p~~eRv~~v~eai~rA~~eTGe~K~~~~NiTa~~~~eM~~Ra~ 264 (493)
T 4f0h_A 217 SQPFMRWRERYLFVMEAVNKAAAATGEVKGHYLNVTAATMEEMYARAQ 264 (493)
T ss_dssp SBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCCSSHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhHCCcceEEeecCCCCHHHHHHHHH
Confidence 4569999999999999999999999999999877774 244455553
No 7
>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A
Probab=30.69 E-value=52 Score=35.16 Aligned_cols=112 Identities=23% Similarity=0.278 Sum_probs=74.2
Q ss_pred hHHHHHHHHhhhhHHHHhHHHH---HHHHhhcCchhHHHHHHHHhhcccHHHHHH--------HHHhhcch----hhHHH
Q 013024 278 TETALYRARRHLFKEERLKAEQ---ERLERIGPIAYYSEWVKAWKRDTSREAIQK--------HYEETGED----ENTQL 342 (451)
Q Consensus 278 tEaaL~rARrhl~kEERl~aEq---eRle~iGpiAYYsEWVkawKkDTSreAiqk--------hfeeTGEd----e~~QL 342 (451)
.|+...=|+|+-=.-|.|-+.+ +|++|.=-||=-.+||-+=.=.|-+||||- |.|.+|.. -.+|+
T Consensus 212 ~eavi~~a~Rya~la~elA~~e~d~~rk~EL~~iA~~~~~vp~~pa~tf~EAlQ~~~f~~l~~~~E~ng~~~S~GR~Dq~ 291 (787)
T 1r9d_A 212 CEAAITYVNRYAKKAKEIADNTSDAKRKAELNEIAKICSKVSGEGAKSFYEACQLFWFIHAIINIESNGHSISPARFDQY 291 (787)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHHHHHHCCCSCBCCBSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHhhhccCCCcccCccHHHH
Confidence 5777777777755544454333 678777778888999998888899999996 44566632 45566
Q ss_pred HHHhhhc----c---hhh----HHhhhcCceeeecCccccccCHHHHhhhhcCCCccccccc-ccCCc
Q 013024 343 IEMFCHQ----T---DRE----YRIMMGNDIRIKRDPLAMRLREDQIKQIWGGDPVYPTVNY-IQDPD 398 (451)
Q Consensus 343 i~Mf~hQ----T---~rE----YRiMmGTDvRI~RDPLamRMredqIKQiWGGDPVYPTiNY-~QDPd 398 (451)
|.=|--. | +.| +.|++. +++-.|+|- --+.++|+|.|-++|- -+|||
T Consensus 292 L~Pyy~~Dl~lt~eeA~Eli~~f~iK~~-~~~~~r~~~--------~~~~f~G~~~~~~~~iGG~~~d 350 (787)
T 1r9d_A 292 MYPYYENDKNITDKFAQELIDCIWIKLN-DINKVRDEI--------STKHFGGYPMYQNLIVGGQNSE 350 (787)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHTT-TBCCCCCTT--------HHHHSCSSCCCCEEEECCBCTT
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHHhh-cccccCCcc--------hhhccCCCCCcceEEECCcCCC
Confidence 6554211 1 111 344443 566666654 3478999999998887 56765
No 8
>1wdd_A Ribulose bisphosphate carboxylase large chain; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: c.1.14.1 d.58.9.1 PDB: 3axk_A* 3axm_A* 1rlc_L* 4rub_A* 3rub_L 1ej7_L 1aa1_L* 1aus_L 1rbo_L* 1rco_L* 1rcx_L* 1rxo_L* 1gk8_A* 1ir2_A* 1uzd_A* 1uzh_A* 2v69_A* 1uwa_A* 2v63_A* 2v67_A* ...
Probab=29.15 E-value=17 Score=37.08 Aligned_cols=37 Identities=30% Similarity=0.333 Sum_probs=32.9
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCch
Q 013024 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPTL 277 (451)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQikL~Ge~PT~ 277 (451)
+.++++|..|.+-|--++.+|.+|||++|+|==..|-
T Consensus 208 ~qpf~p~~eR~~~v~eai~rA~~eTGe~k~~~~NiTa 244 (477)
T 1wdd_A 208 SQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYLNATA 244 (477)
T ss_dssp SBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCC
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhCCcceeecCcCC
Confidence 4679999999998888899999999999999877775
No 9
>3n5o_A Glutathione transferase; seattle structural genomics center for infectious disease, S GST, pathogenic fungus, coccidioidomycosis; HET: GSH; 1.85A {Coccidioides immitis} PDB: 3lg6_A*
Probab=28.22 E-value=1.1e+02 Score=25.00 Aligned_cols=69 Identities=23% Similarity=0.163 Sum_probs=43.7
Q ss_pred HHHHHHHhhcceeeecCCCchhHHHHHHHHhhhhHHHHhHHHHHHHHhhc-CchhHHHHHHHHh-hcccHHHHHHHHHhh
Q 013024 257 VFLKAMAETGQIKLYGEHPTLTETALYRARRHLFKEERLKAEQERLERIG-PIAYYSEWVKAWK-RDTSREAIQKHYEET 334 (451)
Q Consensus 257 Vf~kAMAetGQikL~Ge~PT~tEaaL~rARrhl~kEERl~aEqeRle~iG-piAYYsEWVkawK-kDTSreAiqkhfeeT 334 (451)
++.+.++++|+=-|.|+++|++..+|+-.=..+. ..| .+.=|.. |.+|- |=.++.+|++.+++-
T Consensus 160 ~le~~L~~~~~~fl~G~~~t~ADi~l~~~l~~~~-------------~~~~~~~~~p~-l~~w~~~~~~~p~~~~~~~~~ 225 (235)
T 3n5o_A 160 AVEKLLELSAGRFCVGDEITLADVCLVPAVWAAE-------------RVGMDLARFPI-TKRVFEEMLKEEAVQKAHWQK 225 (235)
T ss_dssp HHHHHHHHHBSSSSSBTSCCHHHHHHHHHHHHHH-------------HTTCCGGGSHH-HHHHHHHHHTCHHHHHTCGGG
T ss_pred HHHHHHHhcCCCcccCCcccHHHHHHHHHHHHHH-------------HhCCCcccChH-HHHHHHHHHcCHHHHhhCccc
Confidence 4556666657778999999999999886544331 122 1222322 33333 445688999988887
Q ss_pred cchhh
Q 013024 335 GEDEN 339 (451)
Q Consensus 335 GEde~ 339 (451)
+.+.-
T Consensus 226 ~~~~p 230 (235)
T 3n5o_A 226 QEDTP 230 (235)
T ss_dssp STTSC
T ss_pred CCCch
Confidence 76643
No 10
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=28.10 E-value=21 Score=32.68 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=38.2
Q ss_pred cCCCcccccccc-c--CCccccccCCCCCCCCChhhHHHHHHhCccc--------cHHHHHHHHh
Q 013024 383 GGDPVYPTVNYI-Q--DPDEVIDYRGPDFHEPTPNMLDYLKEHGKVI--------SREELEEILT 436 (451)
Q Consensus 383 GGDPVYPTiNY~-Q--DPdeViDYRgp~fHEPTP~~v~~L~e~G~~I--------srEel~~iL~ 436 (451)
.|-|||+++.=. . ++|.||++..+.+| ++++..+-++|+-. +.++.+++++
T Consensus 48 ~G~~vy~sl~el~~~~~~D~viI~tP~~~~---~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~ 109 (288)
T 2nu8_A 48 LGLPVFNTVREAVAATGATASVIYVPAPFC---KDSILEAIDAGIKLIITITEGIPTLDMLTVKV 109 (288)
T ss_dssp TTEEEESSHHHHHHHHCCCEEEECCCGGGH---HHHHHHHHHTTCSEEEECCCCCCHHHHHHHHH
T ss_pred CCeeccCCHHHHhhcCCCCEEEEecCHHHH---HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
Confidence 478999987633 3 79999999999887 78888888898642 4555445544
No 11
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=27.97 E-value=35 Score=26.19 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=18.4
Q ss_pred hhHHHHHHh-CccccHHHHHHHH
Q 013024 414 NMLDYLKEH-GKVISREELEEIL 435 (451)
Q Consensus 414 ~~v~~L~e~-G~~IsrEel~~iL 435 (451)
.+|.+|..| |.++||++|.+.+
T Consensus 38 ~lL~~L~~~~g~~vsr~~L~~~v 60 (110)
T 1opc_A 38 AVLKALVSHPREPLSRDKLMNLA 60 (110)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHH
T ss_pred HHHHHHHHcCCceEcHHHHHHHH
Confidence 578887664 8999999999887
No 12
>1bwv_A Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: c.1.14.1 d.58.9.1 PDB: 1iwa_A 1bxn_A
Probab=27.84 E-value=19 Score=36.87 Aligned_cols=37 Identities=27% Similarity=0.243 Sum_probs=33.0
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCch
Q 013024 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPTL 277 (451)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQikL~Ge~PT~ 277 (451)
+.++++|..|.+-|--++.+|.+|||++|+|==..|-
T Consensus 217 ~qpf~p~~eR~~~v~eai~rA~~eTGe~k~~~~NiTa 253 (493)
T 1bwv_A 217 SQPFMRWRERYLFTMEAVNKASAATGEVKGHYLNVTA 253 (493)
T ss_dssp SBTTBCHHHHHHHHHHHHHHHHHHHTSCCEEEEECCC
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhCCcceeeccCCC
Confidence 4679999999998888899999999999999877774
No 13
>2oem_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; rubisco-like protein, isomerase; HET: KCX 1AE; 1.70A {Geobacillus kaustophilus} PDB: 2oel_A* 2oek_A* 2oej_A
Probab=27.42 E-value=15 Score=36.65 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=31.9
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCc
Q 013024 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPT 276 (451)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQikL~Ge~PT 276 (451)
+.++++|..|.+-|--++.+|.+|||++|+|==..|
T Consensus 180 ~qpf~p~~eR~~~v~eai~ra~~eTGe~k~~~~NiT 215 (413)
T 2oem_A 180 DSELLPFEKRITEGKAALQEVYEQTGKRTLYAVNLT 215 (413)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHCCcceeeCcCC
Confidence 345999999999888889999999999999987766
No 14
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=27.14 E-value=43 Score=25.97 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=18.3
Q ss_pred hhHHHHHHh-CccccHHHHHHHH
Q 013024 414 NMLDYLKEH-GKVISREELEEIL 435 (451)
Q Consensus 414 ~~v~~L~e~-G~~IsrEel~~iL 435 (451)
.+|.+|..| |.++||++|.+.+
T Consensus 41 ~lL~~L~~~~g~~vsr~~L~~~v 63 (110)
T 2pmu_A 41 TLLRYFVINAGTVLSKPKILDHV 63 (110)
T ss_dssp HHHHHHHHTTTSCBCHHHHHHHH
T ss_pred HHHHHHHHCCCEEEcHHHHHHHH
Confidence 477787655 9999999999887
No 15
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=26.74 E-value=39 Score=25.91 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=18.8
Q ss_pred hhHHHHHHh-CccccHHHHHHHH
Q 013024 414 NMLDYLKEH-GKVISREELEEIL 435 (451)
Q Consensus 414 ~~v~~L~e~-G~~IsrEel~~iL 435 (451)
.+|.+|..| |.++||++|.+.+
T Consensus 36 ~lL~~L~~~~g~~vsr~~L~~~v 58 (109)
T 2hqn_A 36 EVLTHLARHRDQIVSKEQLLDAI 58 (109)
T ss_dssp HHHHHHHHHTCSEEEHHHHHHHH
T ss_pred HHHHHHHHCCCeeEcHHHHHHHH
Confidence 688888665 8999999999887
No 16
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=26.71 E-value=17 Score=37.72 Aligned_cols=19 Identities=42% Similarity=0.669 Sum_probs=16.8
Q ss_pred ccccCCccccccCCCCCCC
Q 013024 392 NYIQDPDEVIDYRGPDFHE 410 (451)
Q Consensus 392 NY~QDPdeViDYRgp~fHE 410 (451)
+||.+-+.+||.|||-|-.
T Consensus 525 ~~~~~~~~~~d~rgp~f~~ 543 (549)
T 2du7_A 525 KQIMGENKVIDVRGPVFLN 543 (549)
T ss_dssp HHHTTTTCCBCCCCCCCCC
T ss_pred HHHhcCCceEEeeCceEEE
Confidence 4889999999999999864
No 17
>2qyg_A Ribulose bisphosphate carboxylase-like protein 2; beta-alpha-barrel, unknown function; 3.30A {Rhodopseudomonas palustris}
Probab=26.13 E-value=18 Score=36.57 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=31.9
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCc
Q 013024 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPT 276 (451)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQikL~Ge~PT 276 (451)
..++++|..|.+-|--++.+|.+|||++|+|==..|
T Consensus 225 ~qpf~p~~eR~~~v~eai~ra~~eTGe~k~y~~NiT 260 (452)
T 2qyg_A 225 DVDWCPLAERAALLGDACRRASAETGVPKIYLANIT 260 (452)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHHHHHSSCCEEEEECC
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhCCcceecCcCC
Confidence 456999999998888889999999999999987766
No 18
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=26.03 E-value=9.1 Score=35.38 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=33.1
Q ss_pred cCCCccccccccc---C-CccccccCCCCCCCCChhhHHHHHHhCcc
Q 013024 383 GGDPVYPTVNYIQ---D-PDEVIDYRGPDFHEPTPNMLDYLKEHGKV 425 (451)
Q Consensus 383 GGDPVYPTiNY~Q---D-PdeViDYRgp~fHEPTP~~v~~L~e~G~~ 425 (451)
.|-||||++.=.. + ||-+|+|..|.+| ++++..+.++|+-
T Consensus 54 ~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~---~~~v~ea~~~Gi~ 97 (297)
T 2yv2_A 54 HGVPVYDSVKEALAEHPEINTSIVFVPAPFA---PDAVYEAVDAGIR 97 (297)
T ss_dssp TTEEEESSHHHHHHHCTTCCEEEECCCGGGH---HHHHHHHHHTTCS
T ss_pred CCEeeeCCHHHHhhcCCCCCEEEEecCHHHH---HHHHHHHHHCCCC
Confidence 4899999987432 3 9999999999775 8899999999874
No 19
>1ykw_A Rubisco-like protein; beta-alpha-barrel, unknown function; 2.00A {Chlorobaculum tepidum} SCOP: c.1.14.1 d.58.9.1 PDB: 1tel_A
Probab=25.16 E-value=19 Score=36.28 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=32.1
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCc
Q 013024 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPT 276 (451)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQikL~Ge~PT 276 (451)
..++++|..|.+-|--++.+|.+|||++|+|==..|
T Consensus 205 ~qpf~p~~eR~~~v~eai~~a~~eTGe~k~~~~NiT 240 (435)
T 1ykw_A 205 DVTWSSIEERAAHLGKARRKAEAETGEPKIYLANIT 240 (435)
T ss_dssp SBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECC
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhCCcceeecccC
Confidence 456999999999888889999999999999987766
No 20
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=24.61 E-value=53 Score=24.51 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=18.4
Q ss_pred hhHHHHHH-hCccccHHHHHHHHh
Q 013024 414 NMLDYLKE-HGKVISREELEEILT 436 (451)
Q Consensus 414 ~~v~~L~e-~G~~IsrEel~~iL~ 436 (451)
.+|.+|.. .|.++||++|.+.+=
T Consensus 29 ~lL~~L~~~~g~~vsr~~L~~~vw 52 (96)
T 3rjp_A 29 DLLNILMTNMNRVMTREELLSNVW 52 (96)
T ss_dssp HHHHHHHHTTTSCBCHHHHHHHHS
T ss_pred HHHHHHHhCCCeeEcHHHHHHHHc
Confidence 57777755 589999999988773
No 21
>2d69_A Ribulose bisphosphate carboxylase; alpha/beta barrel, structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.90A {Pyrococcus horikoshii} SCOP: c.1.14.1 d.58.9.1 PDB: 2cxe_A 2cwx_A
Probab=23.92 E-value=36 Score=34.21 Aligned_cols=37 Identities=27% Similarity=0.210 Sum_probs=32.9
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCch
Q 013024 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPTL 277 (451)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQikL~Ge~PT~ 277 (451)
+.++++|..|.+-|--++.+|.+|||++|+|==..|-
T Consensus 193 ~qpf~p~~eRv~~v~eai~ra~~eTGe~k~y~~NiTa 229 (430)
T 2d69_A 193 SFPFNRFEERVRKLYRVRDRVEAETGETKEYLINITG 229 (430)
T ss_dssp CBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEECBCCS
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhhCCccEEEeecCC
Confidence 4579999999998888999999999999999877774
No 22
>2zvi_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; methionine salvage pathway, amino-acid biosynthesis, isomerase, magnesium, metal- binding; 2.30A {Bacillus subtilis}
Probab=23.76 E-value=19 Score=36.11 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=31.8
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCc
Q 013024 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPT 276 (451)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQikL~Ge~PT 276 (451)
+.++++|..|.+-|--++.+|.+|||++|+|==..|
T Consensus 194 ~qpf~p~~eRv~~v~eai~ra~~eTGe~k~y~~NiT 229 (425)
T 2zvi_A 194 ETGLAPFETRIAEGKQILKETYEQTGHKTLYAVNLT 229 (425)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhCCcceeeCcCC
Confidence 456999999998888889999999999999976666
No 23
>3kdn_A Rubisco, ribulose bisphosphate carboxylase; ribulose-1,5-bisphosphate carboxylase/oxygenase, Ca dioxide fixation, lyase, magnesium; HET: KCX CAP; 2.09A {Thermococcus kodakaraensis} PDB: 3a13_A* 3kdo_A* 3a12_A* 1geh_A*
Probab=22.82 E-value=32 Score=34.71 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=33.1
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCch
Q 013024 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPTL 277 (451)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQikL~Ge~PT~ 277 (451)
..++++|..|.+-|--++.+|-+|||++|+|==..|-
T Consensus 196 ~qpf~p~~eRv~~v~eai~rA~~eTGe~k~y~~NiTa 232 (444)
T 3kdn_A 196 SPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITA 232 (444)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEeecCC
Confidence 4569999999999999999999999999999777774
No 24
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.69 E-value=52 Score=25.04 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=20.7
Q ss_pred hhhHHHHHHhCccccHHHHHHHHhh
Q 013024 413 PNMLDYLKEHGKVISREELEEILTK 437 (451)
Q Consensus 413 P~~v~~L~e~G~~IsrEel~~iL~k 437 (451)
-.++++|.++| +||.++.+.|.++
T Consensus 25 ~~lld~L~~~~-vlt~~~~e~I~~~ 48 (94)
T 2p1h_A 25 SYIMDHMISDG-FLTISEEEKVRNE 48 (94)
T ss_dssp HHHHHHHHHHT-SSCHHHHHHHHTS
T ss_pred HHHHHHHHHCC-CCCHHHHHHHHcC
Confidence 36899999999 6789999999975
No 25
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=22.63 E-value=55 Score=25.01 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=18.0
Q ss_pred hhHHHHHH-hCccccHHHHHHHH
Q 013024 414 NMLDYLKE-HGKVISREELEEIL 435 (451)
Q Consensus 414 ~~v~~L~e-~G~~IsrEel~~iL 435 (451)
.+|.+|.. .|.++||++|.+.+
T Consensus 38 ~lL~~L~~~~g~vvsr~~L~~~v 60 (106)
T 1gxq_A 38 KLLHFFMTHPERVYSREQLLNHV 60 (106)
T ss_dssp HHHHHHHHSCSSEECHHHHHHHH
T ss_pred HHHHHHHHCCCeeEcHHHHHHHH
Confidence 46777765 59999999999887
No 26
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=21.26 E-value=11 Score=34.79 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=33.3
Q ss_pred cCCCcccccccc-c--CCccccccCCCCCCCCChhhHHHHHHhCcc
Q 013024 383 GGDPVYPTVNYI-Q--DPDEVIDYRGPDFHEPTPNMLDYLKEHGKV 425 (451)
Q Consensus 383 GGDPVYPTiNY~-Q--DPdeViDYRgp~fHEPTP~~v~~L~e~G~~ 425 (451)
.|-||||++.=. . +||-||+|..|.+| ++++..+-++|+-
T Consensus 54 ~G~~vy~sl~el~~~~~~Dv~ii~vp~~~~---~~~v~ea~~~Gi~ 96 (294)
T 2yv1_A 54 HGVPVFDTVKEAVKETDANASVIFVPAPFA---KDAVFEAIDAGIE 96 (294)
T ss_dssp TTEEEESSHHHHHHHHCCCEEEECCCHHHH---HHHHHHHHHTTCS
T ss_pred CCEeeeCCHHHHhhcCCCCEEEEccCHHHH---HHHHHHHHHCCCC
Confidence 489999988643 3 79999999999876 7889999999874
No 27
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=20.24 E-value=63 Score=24.32 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=18.2
Q ss_pred hhHHHHHH-hCccccHHHHHHHHh
Q 013024 414 NMLDYLKE-HGKVISREELEEILT 436 (451)
Q Consensus 414 ~~v~~L~e-~G~~IsrEel~~iL~ 436 (451)
.+|.+|.. .|.++||++|.+.+=
T Consensus 35 ~lL~~L~~~~g~~vsr~~L~~~vw 58 (102)
T 3zq7_A 35 RLLAVLLNNAGKVLTQRQLLNQVW 58 (102)
T ss_dssp HHHHHHHHTTTCEEEHHHHHHHHT
T ss_pred HHHHHHHHCCCeeECHHHHHHHhc
Confidence 57777755 589999999988773
No 28
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=20.20 E-value=62 Score=26.42 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=18.2
Q ss_pred hhHHHHHH-hCccccHHHHHHHHh
Q 013024 414 NMLDYLKE-HGKVISREELEEILT 436 (451)
Q Consensus 414 ~~v~~L~e-~G~~IsrEel~~iL~ 436 (451)
++|.+|.+ .|.++||++|.+.+=
T Consensus 43 ~lL~~L~~~~g~vvsre~L~~~vW 66 (120)
T 2zxj_A 43 ELFHYLSKHMGQVMTREHLLQTVW 66 (120)
T ss_dssp HHHHHHHTTTTCCBCHHHHHHHHH
T ss_pred HHHHHHHhCCCceEcHHHHHHHhc
Confidence 57777765 599999999987663
Done!