Query 013025
Match_columns 451
No_of_seqs 244 out of 1056
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:46:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0819 TenA Putative transcri 100.0 4.3E-49 9.3E-54 375.3 25.6 210 14-243 1-214 (218)
2 PRK14713 multifunctional hydro 100.0 2.5E-44 5.5E-49 385.8 26.9 219 4-247 308-528 (530)
3 PRK09517 multifunctional thiam 100.0 4.8E-43 1E-47 389.0 26.0 213 8-247 538-752 (755)
4 PTZ00347 phosphomethylpyrimidi 100.0 3.5E-42 7.6E-47 367.3 27.3 217 10-253 7-224 (504)
5 PF03070 TENA_THI-4: TENA/THI- 100.0 6.3E-43 1.4E-47 331.1 18.9 203 21-243 1-207 (210)
6 KOG2598 Phosphomethylpyrimidin 99.9 4.3E-26 9.4E-31 229.9 21.0 210 10-243 305-519 (523)
7 COG4359 Uncharacterized conser 99.6 1.7E-15 3.6E-20 138.7 10.1 120 262-445 2-158 (220)
8 TIGR03333 salvage_mtnX 2-hydro 99.4 1.7E-12 3.7E-17 123.8 10.0 116 266-445 2-155 (214)
9 PRK09552 mtnX 2-hydroxy-3-keto 99.4 2.7E-12 5.8E-17 122.8 10.1 124 262-443 2-157 (219)
10 PF06888 Put_Phosphatase: Puta 99.3 6.1E-12 1.3E-16 121.9 8.9 107 264-428 1-110 (234)
11 TIGR01488 HAD-SF-IB Haloacid D 99.1 3.7E-10 8.1E-15 103.3 7.6 123 265-444 1-152 (177)
12 PLN02954 phosphoserine phospha 99.0 2E-09 4.3E-14 102.6 9.9 112 261-430 10-123 (224)
13 TIGR01489 DKMTPPase-SF 2,3-dik 99.0 6.5E-09 1.4E-13 95.7 12.1 126 263-445 1-160 (188)
14 TIGR00338 serB phosphoserine p 98.9 7.9E-09 1.7E-13 98.2 10.5 72 371-446 69-164 (219)
15 TIGR01544 HAD-SF-IE haloacid d 98.9 6.6E-09 1.4E-13 103.0 9.7 129 261-430 20-160 (277)
16 KOG3120 Predicted haloacid deh 98.7 3.2E-08 7E-13 93.7 8.6 112 260-428 10-122 (256)
17 PRK11133 serB phosphoserine ph 98.7 8E-08 1.7E-12 97.7 11.4 128 262-446 109-260 (322)
18 PRK05157 pyrroloquinoline quin 98.7 2.4E-06 5.1E-11 83.3 20.3 205 9-246 7-230 (246)
19 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.7 1.6E-07 3.4E-12 87.5 10.4 54 373-430 66-119 (201)
20 COG5424 Pyrroloquinoline quino 98.6 5.7E-06 1.2E-10 79.3 20.0 185 32-243 25-225 (242)
21 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.6 3.9E-07 8.6E-12 85.3 11.2 59 368-430 61-126 (202)
22 TIGR02111 PQQ_syn_pqqC coenzym 98.5 5.6E-06 1.2E-10 80.1 18.0 185 32-247 20-224 (239)
23 TIGR01545 YfhB_g-proteo haloac 98.5 5.9E-07 1.3E-11 85.9 11.2 57 367-427 66-131 (210)
24 PF12710 HAD: haloacid dehalog 98.4 2.7E-07 5.7E-12 85.2 5.1 41 387-431 85-129 (192)
25 TIGR02137 HSK-PSP phosphoserin 98.2 6.6E-06 1.4E-10 78.3 8.9 54 372-430 53-106 (203)
26 PRK13582 thrH phosphoserine ph 98.2 1.3E-05 2.9E-10 75.1 10.5 53 373-430 54-106 (205)
27 COG0560 SerB Phosphoserine pho 98.2 3.6E-06 7.8E-11 80.7 6.6 61 369-433 58-119 (212)
28 PRK11590 hypothetical protein; 97.9 5.5E-05 1.2E-09 72.1 9.8 55 371-429 71-134 (211)
29 KOG1615 Phosphoserine phosphat 97.7 0.00011 2.4E-09 68.8 7.0 107 262-426 15-123 (227)
30 PRK13222 phosphoglycolate phos 97.6 0.00054 1.2E-08 64.9 10.8 42 385-430 91-132 (226)
31 TIGR01449 PGP_bact 2-phosphogl 97.5 0.0012 2.5E-08 62.1 11.6 42 385-430 83-124 (213)
32 PRK13288 pyrophosphatase PpaX; 97.5 0.00071 1.5E-08 64.1 9.7 59 384-446 79-151 (214)
33 PLN02575 haloacid dehalogenase 97.4 0.00097 2.1E-08 69.4 11.2 41 385-429 214-254 (381)
34 PRK13225 phosphoglycolate phos 97.4 0.0015 3.2E-08 65.1 11.8 59 384-446 139-208 (273)
35 CHL00168 pbsA heme oxygenase; 97.4 0.045 9.8E-07 53.5 21.7 192 14-242 3-206 (238)
36 TIGR02253 CTE7 HAD superfamily 97.3 0.0013 2.8E-08 62.2 9.0 40 385-428 92-131 (221)
37 TIGR01428 HAD_type_II 2-haloal 97.2 0.0086 1.9E-07 55.8 13.4 48 379-430 84-131 (198)
38 cd01427 HAD_like Haloacid deha 97.2 0.00059 1.3E-08 57.9 4.9 43 383-429 20-62 (139)
39 PF05822 UMPH-1: Pyrimidine 5' 97.1 0.00098 2.1E-08 65.2 6.8 100 318-428 26-127 (246)
40 TIGR03351 PhnX-like phosphonat 97.1 0.0042 9.2E-08 58.8 10.9 42 385-430 85-126 (220)
41 PRK13226 phosphoglycolate phos 97.1 0.0066 1.4E-07 58.4 12.3 40 385-428 93-132 (229)
42 TIGR02009 PGMB-YQAB-SF beta-ph 97.1 0.0068 1.5E-07 55.5 11.8 39 385-429 86-124 (185)
43 PRK11587 putative phosphatase; 97.1 0.0021 4.6E-08 61.1 8.3 42 384-429 80-121 (218)
44 KOG3128 Uncharacterized conser 97.0 0.0025 5.3E-08 62.1 8.3 137 261-428 36-175 (298)
45 PRK10826 2-deoxyglucose-6-phos 97.0 0.0079 1.7E-07 57.3 11.8 45 384-432 89-133 (222)
46 PLN03243 haloacid dehalogenase 97.0 0.0061 1.3E-07 60.2 10.8 40 385-428 107-146 (260)
47 TIGR01454 AHBA_synth_RP 3-amin 96.9 0.005 1.1E-07 57.8 9.0 43 384-430 72-114 (205)
48 TIGR01549 HAD-SF-IA-v1 haloaci 96.8 0.0024 5.1E-08 57.0 5.8 38 385-426 62-99 (154)
49 PLN02770 haloacid dehalogenase 96.8 0.0072 1.6E-07 59.0 9.3 41 385-429 106-146 (248)
50 PRK13223 phosphoglycolate phos 96.8 0.017 3.7E-07 57.2 12.1 40 385-428 99-138 (272)
51 COG0637 Predicted phosphatase/ 96.7 0.02 4.4E-07 55.0 11.8 46 381-430 80-125 (221)
52 cd00232 HemeO Heme oxygenase c 96.6 0.4 8.7E-06 45.1 19.8 183 16-234 2-193 (203)
53 TIGR01422 phosphonatase phosph 96.6 0.015 3.2E-07 56.6 10.4 41 384-428 96-136 (253)
54 TIGR02252 DREG-2 REG-2-like, H 96.6 0.031 6.7E-07 52.2 11.8 40 385-429 103-142 (203)
55 PF13419 HAD_2: Haloacid dehal 96.5 0.0044 9.6E-08 55.2 5.4 42 384-429 74-115 (176)
56 PRK13478 phosphonoacetaldehyde 96.5 0.014 3.1E-07 57.3 9.3 38 385-426 99-136 (267)
57 PRK06698 bifunctional 5'-methy 96.5 0.012 2.6E-07 62.7 9.3 57 385-445 328-397 (459)
58 PRK09449 dUMP phosphatase; Pro 96.5 0.029 6.3E-07 53.3 11.0 40 385-429 93-132 (224)
59 PRK14988 GMP/IMP nucleotidase; 96.4 0.041 8.9E-07 52.9 11.7 43 382-428 88-130 (224)
60 TIGR01990 bPGM beta-phosphoglu 96.2 0.032 6.9E-07 51.0 9.7 30 385-417 85-114 (185)
61 PLN02177 glycerol-3-phosphate 95.8 0.033 7.1E-07 60.1 8.5 47 371-425 87-140 (497)
62 PLN02940 riboflavin kinase 95.6 0.027 5.8E-07 58.8 6.9 39 384-426 90-128 (382)
63 TIGR01548 HAD-SF-IA-hyp1 haloa 95.5 0.089 1.9E-06 49.1 9.4 39 388-430 107-145 (197)
64 TIGR01993 Pyr-5-nucltdase pyri 95.4 0.13 2.8E-06 47.3 10.2 39 385-430 82-120 (184)
65 PLN02919 haloacid dehalogenase 95.2 0.14 3E-06 60.3 11.8 40 387-430 161-200 (1057)
66 TIGR02247 HAD-1A3-hyp Epoxide 95.2 0.15 3.3E-06 47.9 9.9 30 385-417 92-121 (211)
67 PRK09456 ?-D-glucose-1-phospha 95.1 0.27 5.8E-06 46.0 11.4 28 386-416 83-110 (199)
68 TIGR02254 YjjG/YfnB HAD superf 95.0 0.4 8.7E-06 45.0 12.4 39 385-428 95-133 (224)
69 PRK08238 hypothetical protein; 94.8 0.14 3E-06 55.1 9.6 42 385-430 70-111 (479)
70 PRK10725 fructose-1-P/6-phosph 94.8 0.46 9.9E-06 43.6 11.7 40 385-430 86-125 (188)
71 PF01126 Heme_oxygenase: Heme 94.7 2.9 6.3E-05 39.3 17.3 109 14-133 1-114 (205)
72 PLN02779 haloacid dehalogenase 94.6 0.16 3.4E-06 50.8 8.9 37 386-426 143-179 (286)
73 PF12981 DUF3865: Domain of Un 94.4 0.46 1E-05 45.5 10.7 187 31-242 21-225 (231)
74 TIGR01672 AphA HAD superfamily 94.1 0.13 2.9E-06 50.2 6.9 42 387-431 114-158 (237)
75 TIGR01509 HAD-SF-IA-v3 haloaci 94.1 0.4 8.7E-06 43.3 9.7 31 386-419 84-114 (183)
76 PRK10563 6-phosphogluconate ph 94.1 0.67 1.5E-05 43.8 11.6 39 385-430 86-124 (221)
77 PLN02499 glycerol-3-phosphate 94.1 0.14 3.1E-06 54.9 7.5 113 262-425 7-130 (498)
78 COG0546 Gph Predicted phosphat 93.6 0.32 6.9E-06 46.5 8.3 41 386-430 88-128 (220)
79 COG5398 Heme oxygenase [Inorga 93.6 3.6 7.8E-05 39.4 14.8 108 17-131 4-112 (238)
80 PRK10748 flavin mononucleotide 92.9 1.2 2.5E-05 43.1 11.1 27 385-415 111-137 (238)
81 PLN02811 hydrolase 92.7 2.1 4.5E-05 40.7 12.4 35 384-421 75-109 (220)
82 TIGR01533 lipo_e_P4 5'-nucleot 92.6 1.2 2.6E-05 44.4 10.9 44 385-431 116-161 (266)
83 PHA02597 30.2 hypothetical pro 91.9 0.67 1.5E-05 43.0 7.8 27 384-414 71-97 (197)
84 PF08235 LNS2: LNS2 (Lipin/Ned 91.8 0.074 1.6E-06 48.8 1.1 21 265-285 1-21 (157)
85 KOG2914 Predicted haloacid-hal 90.2 1.3 2.8E-05 43.0 8.1 28 385-415 90-117 (222)
86 PRK11009 aphA acid phosphatase 87.9 1.2 2.5E-05 43.7 6.1 42 386-430 113-157 (237)
87 KOG2116 Protein involved in pl 84.4 0.51 1.1E-05 51.8 1.7 23 263-285 530-552 (738)
88 smart00775 LNS2 LNS2 domain. T 82.0 0.45 9.8E-06 43.4 0.2 21 265-285 1-21 (157)
89 TIGR01493 HAD-SF-IA-v2 Haloaci 79.8 3.7 8E-05 37.1 5.4 36 383-429 86-121 (175)
90 COG5083 SMP2 Uncharacterized p 79.5 1.4 3.1E-05 46.4 2.7 25 263-287 375-399 (580)
91 TIGR00685 T6PP trehalose-phosp 78.2 1.7 3.8E-05 42.1 2.8 26 262-287 2-38 (244)
92 COG1011 Predicted hydrolase (H 77.4 34 0.00075 31.9 11.5 39 385-428 97-135 (229)
93 COG4996 Predicted phosphatase 73.9 2.1 4.5E-05 38.3 1.9 34 381-420 35-69 (164)
94 TIGR01662 HAD-SF-IIIA HAD-supe 69.9 10 0.00022 32.6 5.4 42 386-430 24-72 (132)
95 TIGR01681 HAD-SF-IIIC HAD-supe 69.4 5.1 0.00011 34.9 3.4 40 387-429 29-68 (128)
96 TIGR01685 MDP-1 magnesium-depe 68.7 7.4 0.00016 36.2 4.4 45 382-429 40-84 (174)
97 PRK10187 trehalose-6-phosphate 68.3 4.5 9.7E-05 40.0 3.1 15 262-276 13-27 (266)
98 PLN02151 trehalose-phosphatase 68.2 4.2 9.1E-05 42.2 2.9 15 261-275 96-110 (354)
99 smart00577 CPDc catalytic doma 67.6 6.2 0.00013 35.2 3.6 41 384-429 42-82 (148)
100 PF06941 NT5C: 5' nucleotidase 67.5 36 0.00077 31.6 8.9 25 263-289 2-26 (191)
101 PLN02580 trehalose-phosphatase 66.5 3.1 6.7E-05 43.6 1.5 27 261-287 117-154 (384)
102 TIGR01484 HAD-SF-IIB HAD-super 66.0 2.6 5.5E-05 39.3 0.8 14 265-278 1-14 (204)
103 COG1877 OtsB Trehalose-6-phosp 65.3 3.5 7.5E-05 41.1 1.6 27 261-287 16-53 (266)
104 TIGR01684 viral_ppase viral ph 63.0 10 0.00022 38.4 4.4 43 385-431 143-186 (301)
105 PF14518 Haem_oxygenas_2: Iron 61.5 48 0.001 27.5 7.7 63 96-176 20-90 (106)
106 PF05116 S6PP: Sucrose-6F-phos 61.4 5 0.00011 39.2 1.9 16 263-278 2-17 (247)
107 PLN03017 trehalose-phosphatase 61.3 4.7 0.0001 42.0 1.7 15 261-275 109-123 (366)
108 PF03767 Acid_phosphat_B: HAD 60.0 13 0.00029 35.9 4.6 25 387-414 115-139 (229)
109 PRK14501 putative bifunctional 59.0 8.8 0.00019 43.5 3.6 27 261-287 490-527 (726)
110 TIGR01485 SPP_plant-cyano sucr 59.0 5 0.00011 38.9 1.4 14 263-276 1-14 (249)
111 PRK09484 3-deoxy-D-manno-octul 58.2 4.4 9.5E-05 37.6 0.8 16 262-277 20-35 (183)
112 TIGR01487 SPP-like sucrose-pho 55.6 5.7 0.00012 37.4 1.1 15 265-279 3-17 (215)
113 PLN02423 phosphomannomutase 55.2 7.3 0.00016 38.0 1.9 18 261-278 5-22 (245)
114 COG4030 Uncharacterized protei 54.1 1E+02 0.0022 30.4 9.2 53 371-428 66-119 (315)
115 PF00702 Hydrolase: haloacid d 53.8 6.4 0.00014 36.3 1.2 43 385-431 125-167 (215)
116 PHA03398 viral phosphatase sup 53.6 17 0.00037 36.8 4.2 43 385-431 145-188 (303)
117 PRK05446 imidazole glycerol-ph 53.5 9.1 0.0002 39.7 2.3 29 383-414 26-54 (354)
118 TIGR02251 HIF-SF_euk Dullard-l 52.8 15 0.00033 33.4 3.5 40 385-429 40-79 (162)
119 PRK01158 phosphoglycolate phos 52.3 6.9 0.00015 37.0 1.2 16 264-279 4-19 (230)
120 COG0561 Cof Predicted hydrolas 51.5 7.7 0.00017 37.7 1.4 18 262-279 2-19 (264)
121 TIGR01675 plant-AP plant acid 51.3 80 0.0017 30.8 8.3 28 386-416 119-146 (229)
122 TIGR02471 sucr_syn_bact_C sucr 50.9 6.4 0.00014 37.7 0.7 15 265-279 1-15 (236)
123 TIGR02244 HAD-IG-Ncltidse HAD 50.1 16 0.00035 37.7 3.5 60 362-428 162-221 (343)
124 PLN02205 alpha,alpha-trehalose 48.6 15 0.00034 42.5 3.4 26 262-287 595-629 (854)
125 TIGR01689 EcbF-BcbF capsule bi 48.1 9.2 0.0002 33.8 1.2 13 265-277 3-15 (126)
126 PF13344 Hydrolase_6: Haloacid 48.0 26 0.00056 29.3 3.9 42 387-431 14-57 (101)
127 PLN03063 alpha,alpha-trehalose 47.9 11 0.00024 43.3 2.1 15 262-276 506-520 (797)
128 COG5663 Uncharacterized conser 47.8 7.9 0.00017 36.0 0.7 19 265-283 8-26 (194)
129 TIGR01656 Histidinol-ppas hist 47.6 9.2 0.0002 33.9 1.1 13 265-277 2-14 (147)
130 TIGR02463 MPGP_rel mannosyl-3- 47.5 8.1 0.00017 36.4 0.8 15 265-279 1-15 (221)
131 TIGR01681 HAD-SF-IIIC HAD-supe 46.8 10 0.00022 33.0 1.2 15 265-279 2-16 (128)
132 TIGR01662 HAD-SF-IIIA HAD-supe 45.9 11 0.00023 32.5 1.2 12 265-276 2-13 (132)
133 TIGR01482 SPP-subfamily Sucros 43.1 9.4 0.0002 35.8 0.5 14 266-279 1-14 (225)
134 PRK03669 mannosyl-3-phosphogly 42.8 13 0.00029 36.4 1.6 19 261-279 5-23 (271)
135 PF08282 Hydrolase_3: haloacid 42.2 12 0.00027 34.9 1.1 12 266-277 1-12 (254)
136 PRK08942 D,D-heptose 1,7-bisph 42.1 14 0.00031 33.8 1.5 16 262-277 2-17 (181)
137 PF03031 NIF: NLI interacting 41.4 27 0.00058 31.1 3.2 37 385-426 34-70 (159)
138 TIGR02250 FCP1_euk FCP1-like p 41.0 30 0.00064 31.5 3.4 40 384-428 55-94 (156)
139 PRK10530 pyridoxal phosphate ( 40.7 13 0.00029 35.9 1.2 15 264-278 4-18 (272)
140 TIGR01486 HAD-SF-IIB-MPGP mann 40.4 12 0.00026 36.3 0.8 15 265-279 1-15 (256)
141 TIGR02726 phenyl_P_delta pheny 39.8 14 0.0003 34.2 1.0 11 265-275 9-19 (169)
142 TIGR00099 Cof-subfamily Cof su 39.7 13 0.00028 36.0 0.8 14 265-278 1-14 (256)
143 PLN03064 alpha,alpha-trehalose 38.6 23 0.00049 41.5 2.7 15 262-276 590-604 (934)
144 PF00702 Hydrolase: haloacid d 37.2 38 0.00081 31.0 3.6 15 265-279 3-17 (215)
145 TIGR00213 GmhB_yaeD D,D-heptos 36.6 48 0.001 30.2 4.1 30 384-416 23-52 (176)
146 PF08645 PNK3P: Polynucleotide 35.8 18 0.00039 32.9 1.2 13 265-277 2-14 (159)
147 TIGR01668 YqeG_hyp_ppase HAD s 35.3 53 0.0011 29.9 4.2 57 385-444 41-102 (170)
148 PRK10976 putative hydrolase; P 35.2 19 0.0004 35.0 1.2 15 264-278 3-17 (266)
149 PRK15126 thiamin pyrimidine py 34.4 21 0.00045 34.9 1.4 15 264-278 3-17 (272)
150 PF08496 Peptidase_S49_N: Pept 34.1 1.8E+02 0.0038 26.7 7.3 68 195-279 47-114 (155)
151 PTZ00174 phosphomannomutase; P 33.8 20 0.00043 34.8 1.1 15 264-278 6-20 (247)
152 PF02358 Trehalose_PPase: Treh 33.4 18 0.00039 34.7 0.7 10 267-276 1-10 (235)
153 PRK10513 sugar phosphate phosp 33.1 21 0.00045 34.6 1.2 15 264-278 4-18 (270)
154 PRK08942 D,D-heptose 1,7-bisph 33.1 56 0.0012 29.8 4.0 28 385-415 27-54 (181)
155 PF12689 Acid_PPase: Acid Phos 32.9 50 0.0011 30.6 3.6 48 381-431 39-86 (169)
156 TIGR01670 YrbI-phosphatas 3-de 32.9 71 0.0015 28.6 4.5 48 395-446 36-88 (154)
157 TIGR01511 ATPase-IB1_Cu copper 31.9 51 0.0011 36.2 4.1 56 385-444 403-464 (562)
158 PLN02382 probable sucrose-phos 31.9 25 0.00055 37.2 1.6 17 261-277 7-23 (413)
159 PRK00192 mannosyl-3-phosphogly 31.9 24 0.00053 34.6 1.4 17 262-278 3-19 (273)
160 PF11019 DUF2608: Protein of u 31.7 1.4E+02 0.003 29.4 6.7 42 379-424 73-114 (252)
161 TIGR01656 Histidinol-ppas hist 31.5 42 0.00091 29.7 2.8 29 384-415 24-52 (147)
162 TIGR00213 GmhB_yaeD D,D-heptos 29.7 28 0.00061 31.7 1.4 13 264-276 2-14 (176)
163 TIGR02461 osmo_MPG_phos mannos 29.5 22 0.00048 34.1 0.6 14 265-278 1-14 (225)
164 KOG3085 Predicted hydrolase (H 28.6 4.8E+02 0.01 25.6 9.7 27 265-291 9-37 (237)
165 TIGR01691 enolase-ppase 2,3-di 27.9 95 0.0021 29.9 4.7 39 385-427 93-131 (220)
166 TIGR01670 YrbI-phosphatas 3-de 27.1 29 0.00063 31.1 0.9 13 264-276 2-14 (154)
167 PRK14502 bifunctional mannosyl 26.6 54 0.0012 37.1 3.0 17 263-279 416-432 (694)
168 KOG1766 Enhancer of rudimentar 26.0 79 0.0017 26.6 3.2 49 312-360 16-70 (104)
169 TIGR01459 HAD-SF-IIA-hyp4 HAD- 25.7 1.2E+02 0.0026 29.1 5.0 44 385-432 22-67 (242)
170 TIGR01686 FkbH FkbH-like domai 25.7 78 0.0017 32.0 3.9 36 388-427 32-67 (320)
171 PRK12702 mannosyl-3-phosphogly 24.7 38 0.00083 34.4 1.4 16 264-279 2-17 (302)
172 TIGR01668 YqeG_hyp_ppase HAD s 23.5 40 0.00087 30.7 1.2 16 264-279 26-41 (170)
No 1
>COG0819 TenA Putative transcription activator [Transcription]
Probab=100.00 E-value=4.3e-49 Score=375.26 Aligned_cols=210 Identities=30% Similarity=0.482 Sum_probs=196.3
Q ss_pred chHHHHHHHHcHHHHHHhhcCHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 013025 14 EGLARRLWIKFKRESVFAMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAKLSISELRKGVLE 93 (451)
Q Consensus 14 ~~~~~~Lw~~~~~~~~~~~~HPFv~~La~GtL~~~~F~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~l~~~~~~i~~ 93 (451)
+.|++.||+..++.|...++||||++|++||||+++|++||+|||+||.+|+|+++++++|+++.+.+..+...+..+.+
T Consensus 1 ~~f~~~L~~~~~~~W~~~~~H~FV~~L~~GtL~~~~F~~YL~QDy~YL~~~~ra~~~~~~ka~~~~~~~~~~~~~~~~~~ 80 (218)
T COG0819 1 MMFSEELIRAAQPIWQKYIEHPFVQELADGTLPREKFQFYLVQDYLYLVNFARALALLASKAPDLELMEELAKIIQFLVE 80 (218)
T ss_pred CchHHHHHHHhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999888887776665
Q ss_pred -HHHHHHHHHHHcCCCchh--ccCCChHHHHHHHHHHHHhc-CCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHH
Q 013025 94 -ELKMHDSFVKEWGTDLAK--MATVNSATVKYTEFLLATAS-GKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCMRLYAF 169 (451)
Q Consensus 94 -E~~~h~~~~~~~gi~~~~--~~~~~pat~aYt~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~PC~~~Y~~ 169 (451)
|+.+|+++++++||+.++ ..+++|+|.+||+||++++. |++ +++++||+||+|+|.+
T Consensus 81 ~E~~~h~~~~~~lgis~~~~~~~~~~~~~~aYt~ym~~~~~~g~~-------------------~~~~aAl~PC~~~Y~e 141 (218)
T COG0819 81 GEMELHERLAEELGISLDELLKTEPSPANKAYTRYLLDTAYSGSF-------------------AELLAALLPCLWGYAE 141 (218)
T ss_pred HHHHHHHHHHHHhCCCHHHHHhcCCCchHHHHHHHHHHHHhcCCH-------------------HHHHHHHHHHHHHHHH
Confidence 999999999999999842 57899999999999999996 554 6899999999999999
Q ss_pred HHHHHHhhccCCCCCccchhhhhhcCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhccC
Q 013025 170 LGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEVEFFCAQ 243 (451)
Q Consensus 170 ig~~l~~~~~~~~~~~~Y~~WI~~Yss~~f~~~v~~l~~~ld~~~~~~~~~~~~~l~~iF~~a~~lE~~Fwd~a 243 (451)
||+++.+.+. ..++++|++||++|+|++|.+.|++++++||+++...+++++++|+++|++++++|.+||||+
T Consensus 142 ig~~~~~~~~-~~~~~~Y~~Wi~~Y~s~ef~~~v~~~~~~ld~~~~~~~~~~~~~l~~iF~~ss~~E~~Fwd~a 214 (218)
T COG0819 142 IGKRLKAKPR-ASPNPPYQEWIDTYASEEFQEAVEELEALLDSLAENSSEEELEKLKQIFLTASRFELAFWDMA 214 (218)
T ss_pred HHHHHHhccc-cCCCCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998653 347899999999999999999999999999999999999999999999999999999999999
No 2
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=100.00 E-value=2.5e-44 Score=385.77 Aligned_cols=219 Identities=27% Similarity=0.438 Sum_probs=197.7
Q ss_pred CCCCCCCCCcchHHHHHHHHcHHHHHHhhcCHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 013025 4 IPPKSPSPEEEGLARRLWIKFKRESVFAMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAKLS 83 (451)
Q Consensus 4 ~~~~~~~~~~~~~~~~Lw~~~~~~~~~~~~HPFv~~La~GtL~~~~F~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~ 83 (451)
+.++..+.++++|+++||+...+.|..+++||||++|++||||.++|++||+||++||.+|+|+++++++|+++.+++..
T Consensus 308 ~~~~~~~~~~~~fs~~L~~~~~~~w~~~~~HpFv~~L~~GtL~~~~F~~Yl~QD~~yL~~~~r~~a~~~aka~~~e~~~~ 387 (530)
T PRK14713 308 PAPDAVVGPAGPFTAALWQASGPIREAIEDLPFVRALADGTLPEEAFEFYLAQDALYLNGYSRALARLAALAPDPAEQVF 387 (530)
T ss_pred ccccccCCCCccHHHHHHHhhHHHHHHHHcChHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 34455555778999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHcCCCchhccCCChHHHHHHHHHHHHhc-CCCCCCCCCCCCCCchhhhhhHHHHHHHHH
Q 013025 84 ISELRKGV-LEELKMHDSFVKEWGTDLAKMATVNSATVKYTEFLLATAS-GKVEGVKGPGKLATPFEKTKVAAYTLGAMS 161 (451)
Q Consensus 84 l~~~~~~i-~~E~~~h~~~~~~~gi~~~~~~~~~pat~aYt~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~ 161 (451)
+...+..+ .+|+++|+++++.||++ .+++|+|.+|++||++++. +++ +++++||+
T Consensus 388 ~~~~~~~~~~~E~~~h~~~~~~~~~~----~~~~p~~~aY~~~l~~~a~~~~~-------------------~~~l~All 444 (530)
T PRK14713 388 WAQSAQACLEVESELHRSWLGDRDAD----TAPSPVTLAYTDFLLARAAGGSY-------------------AVGAAAVL 444 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcc----CCCChHHHHHHHHHHHHHhcCCH-------------------HHHHHHHH
Confidence 88776655 56999999999999973 5789999999999999986 543 68999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCccchhhhhhcCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhc
Q 013025 162 PCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEVEFFC 241 (451)
Q Consensus 162 PC~~~Y~~ig~~l~~~~~~~~~~~~Y~~WI~~Yss~~f~~~v~~l~~~ld~~~~~~~~~~~~~l~~iF~~a~~lE~~Fwd 241 (451)
||+|+|.+||+++.... ...++++|++||++|+|++|.++|+++++++|++++.++++++++|+++|+++|+||++|||
T Consensus 445 PC~~~Y~~ig~~l~~~~-~~~~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~~~~~~~~~~F~~a~~~E~~Fwd 523 (530)
T PRK14713 445 PCFWLYAEVGAELHARA-GNPDDHPYAEWLQTYADPEFAAATRRAIAFVDRAFRAASPAERAAMARAFLTACRYELEFFD 523 (530)
T ss_pred hHHHHHHHHHHHHHhhc-cCCCCChHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987531 12357899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 013025 242 AQPLAQ 247 (451)
Q Consensus 242 ~a~~~~ 247 (451)
|+ +++
T Consensus 524 ~A-~~~ 528 (530)
T PRK14713 524 QA-RRR 528 (530)
T ss_pred HH-hcc
Confidence 99 543
No 3
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=4.8e-43 Score=389.04 Aligned_cols=213 Identities=24% Similarity=0.351 Sum_probs=193.1
Q ss_pred CCCCCcchHHHHHHHHcHHHHHHhhcCHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 013025 8 SPSPEEEGLARRLWIKFKRESVFAMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAKLSISEL 87 (451)
Q Consensus 8 ~~~~~~~~~~~~Lw~~~~~~~~~~~~HPFv~~La~GtL~~~~F~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~l~~~ 87 (451)
.....+.+|+++||+...+.|..+++||||++|++||||.++|++||+|||+||.+|+|+++++++|+++.+++..+...
T Consensus 538 ~~~~~~~~f~~~L~~~~~~~w~~~~~HPFv~~L~~GtL~~e~F~~YL~QD~~YL~~yar~~a~~~aka~~~~~~~~~~~~ 617 (755)
T PRK09517 538 PRIEPAGPFTRALWEASGDIIAEINDSDFIRMLGDGTLRRPEFDFYIDQDAQYLRQYSRALARLSSIAPDSHAQVEWAQS 617 (755)
T ss_pred cccCCCCChHHHHHHHhHHHHHHHhcChHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34445567999999999999999999999999999999999999999999999999999999999999999888888776
Q ss_pred HH-HHHHHHHHHHHHHHHcCCCchhccCCChHHHHHHHHHHHHhc-CCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH
Q 013025 88 RK-GVLEELKMHDSFVKEWGTDLAKMATVNSATVKYTEFLLATAS-GKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCMR 165 (451)
Q Consensus 88 ~~-~i~~E~~~h~~~~~~~gi~~~~~~~~~pat~aYt~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~PC~~ 165 (451)
+. .+.+|+++|+++++.+|++ .+++|+|.+|++||++++. +++ +++++||+||+|
T Consensus 618 ~~~~~~~E~~~h~~~~~~~~~~----~~~~p~~~aYt~~l~~~a~~g~~-------------------~~~laAllPC~w 674 (755)
T PRK09517 618 AAECIVVEAELHRSYLSGKEAP----SAPSPVTMAYTDFLIARTYTEDY-------------------VVGVAAVLPCYW 674 (755)
T ss_pred HHHHHHHHHHHHHHHHHhcCcC----CCCChHHHHHHHHHHHHHhcCCH-------------------HHHHHHHHHHHH
Confidence 55 4457999999999999863 5789999999999999986 443 689999999999
Q ss_pred HHHHHHHHHHhhccCCCCCccchhhhhhcCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 013025 166 LYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEVEFFCAQPL 245 (451)
Q Consensus 166 ~Y~~ig~~l~~~~~~~~~~~~Y~~WI~~Yss~~f~~~v~~l~~~ld~~~~~~~~~~~~~l~~iF~~a~~lE~~Fwd~a~~ 245 (451)
+|.+||+++.+.. .++++|++||++|+|++|.++|.++++++|++++.++++++++|+++|+++|+||++||||+ +
T Consensus 675 ~Y~~ig~~l~~~~---~~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~~~~~~l~~~F~~a~~lE~~Fwd~A-~ 750 (755)
T PRK09517 675 LYAEIGLMLAEQN---HDEHPYKDWLNTYSGEEFIAGTRAAIARVEKALENAGPEQRVDAARAFLSASVHEREFFDQA-T 750 (755)
T ss_pred HHHHHHHHHHhcc---CCCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 9999999997632 25679999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CC
Q 013025 246 AQ 247 (451)
Q Consensus 246 ~~ 247 (451)
+.
T Consensus 751 ~~ 752 (755)
T PRK09517 751 RH 752 (755)
T ss_pred hc
Confidence 43
No 4
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=3.5e-42 Score=367.33 Aligned_cols=217 Identities=31% Similarity=0.509 Sum_probs=188.1
Q ss_pred CCCcchHHHHHHHHcHHHHHHhhcCHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 013025 10 SPEEEGLARRLWIKFKRESVFAMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAKLSISELRK 89 (451)
Q Consensus 10 ~~~~~~~~~~Lw~~~~~~~~~~~~HPFv~~La~GtL~~~~F~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~l~~~~~ 89 (451)
+|+..+|+++||+++++.|..+++||||++|++||||+++|++||+||++||.+|+|+++++++|+++.+++..+...+.
T Consensus 7 ~~~~~~fs~~L~~~~~~~~~~~~~HpFv~~l~~GtL~~~~F~~Yl~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~~ 86 (504)
T PTZ00347 7 EPVFGGLSEALWKENQDLAMMSLHLPFVQGLGDGTLDQNAFRTYIAQDTLYLNGYIRILSYCITKSDVTATGGGLLELLK 86 (504)
T ss_pred CCCCCCHHHHHHHhHHHHHHHHhCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 57778899999999999999999999999999999999999999999999999999999999999999998888887776
Q ss_pred HHH-HHHHHHHHHHHHcCCCchhccCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHH
Q 013025 90 GVL-EELKMHDSFVKEWGTDLAKMATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCMRLYA 168 (451)
Q Consensus 90 ~i~-~E~~~h~~~~~~~gi~~~~~~~~~pat~aYt~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~PC~~~Y~ 168 (451)
.+. +|..+|+++++. .+..+++|+|++|++||++++..+..+ ++++++||+||+|+|.
T Consensus 87 ~~~~~e~~~h~~~~~~-----~~~~~~~p~~~aY~~~l~~~a~~g~~~----------------~~~~l~Al~pC~~~Y~ 145 (504)
T PTZ00347 87 GVLEELKNCHHHYIDN-----PDAAGPEAACRKYVDFLLASGNADTLG----------------PSVVIAAVIPCARLYA 145 (504)
T ss_pred HHHHHHHHHHHHHHhh-----hhccCCCHHHHHHHHHHHHHHhcCCcc----------------hHHHHHHHHHHHHHHH
Confidence 554 577899999632 134578999999999999999633211 1589999999999999
Q ss_pred HHHHHHHhhccCCCCCccchhhhhhcCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 013025 169 FLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEVEFFCAQPLAQP 248 (451)
Q Consensus 169 ~ig~~l~~~~~~~~~~~~Y~~WI~~Yss~~f~~~v~~l~~~ld~~~~~~~~~~~~~l~~iF~~a~~lE~~Fwd~a~~~~~ 248 (451)
+||+++..... ..++++|++||++|+|++|.+++.++++++|+++. ++++++++++|+++|++|++||||+ +++-
T Consensus 146 ~ig~~l~~~~~-~~~~~~y~~Wi~~y~~~~f~~~~~~~~~~ld~~~~---~~~~~~~~~~F~~~~~~E~~Fw~~A-y~~~ 220 (504)
T PTZ00347 146 WVGQELTNEVE-LTESHPFRRWLLSYSDEPINTSVEQLESLLDKYIR---PGEFSEVAQAYRRAMELEYDFFDSF-GYCL 220 (504)
T ss_pred HHHHHHHhccC-CCCCChHHHHHHhcCCHHHHHHHHHHHHHHHHHhc---hhhHHHHHHHHHHHHHHHHHHhHhH-Hhhh
Confidence 99999876321 22578999999999999999999999999999974 4788899999999999999999999 5443
Q ss_pred Ccccc
Q 013025 249 TVVPL 253 (451)
Q Consensus 249 ~~~~~ 253 (451)
-||+
T Consensus 221 -~w~~ 224 (504)
T PTZ00347 221 -GRPV 224 (504)
T ss_pred -cccc
Confidence 3665
No 5
>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase []. The THI-4 protein, which is involved in thiamine biosynthesis, also contains this domain. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4 []. The exact molecular function of this domain is uncertain.; PDB: 2RD3_D 3RM5_B 1UDD_D 1Z72_B 3HML_A 3HLX_A 3HNH_A 3DDE_B 3OQL_A 2A6B_A ....
Probab=100.00 E-value=6.3e-43 Score=331.08 Aligned_cols=203 Identities=35% Similarity=0.561 Sum_probs=184.5
Q ss_pred HHHcHHHHHHhhcCHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHH
Q 013025 21 WIKFKRESVFAMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAK-LSISELRKGVLEELKMHD 99 (451)
Q Consensus 21 w~~~~~~~~~~~~HPFv~~La~GtL~~~~F~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~-~~l~~~~~~i~~E~~~h~ 99 (451)
|++..+.|..+++||||++|++||||.+.|++||+||++||.+|+|+++++++|+++.+.+ .++..+...+.+|+++|.
T Consensus 1 ~~~~~~~w~~~~~HPFv~~l~~GtL~~~~f~~Yl~QD~~yl~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 80 (210)
T PF03070_consen 1 HQKAEPIWEAILNHPFVQELADGTLPKEAFRYYLIQDYHYLKHFARALALLASKAPDPEEQRELLSRLIQEIEEELELHE 80 (210)
T ss_dssp SHHTHHHHHHHHTSHHHHHHHTTESEHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHCCHHHHHHhCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888899999999999999999999999999999999999999999999999988 455556667778999999
Q ss_pred HHHHHcCCCchh--ccCCChHHHHHHHHHHHHhc-CCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 013025 100 SFVKEWGTDLAK--MATVNSATVKYTEFLLATAS-GKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCMRLYAFLGKEFHA 176 (451)
Q Consensus 100 ~~~~~~gi~~~~--~~~~~pat~aYt~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~PC~~~Y~~ig~~l~~ 176 (451)
++++.+|++.++ ..+++|+|++|++||++++. +++ +++++|++||+|+|.+||+++.+
T Consensus 81 ~~~~~~gi~~~~~~~~~~~p~~~~y~~~l~~~a~~~~~-------------------~~~l~al~pc~~~Y~~~~~~~~~ 141 (210)
T PF03070_consen 81 DFAEELGISREDLENIEPSPATRAYTDFLLSLAQTGSL-------------------AEGLAALLPCEWIYAEIGKRLAE 141 (210)
T ss_dssp HHHHHTTSHHHHHHHSTC-HHHHHHHHHHHHHHHHSSH-------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHhhhhhhHHHHHHHHHHHHhccCCH-------------------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999874 67899999999999999985 553 68999999999999999999987
Q ss_pred hccCCCCCccchhhhhhcCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhccC
Q 013025 177 LLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEVEFFCAQ 243 (451)
Q Consensus 177 ~~~~~~~~~~Y~~WI~~Yss~~f~~~v~~l~~~ld~~~~~~~~~~~~~l~~iF~~a~~lE~~Fwd~a 243 (451)
... ..++++|++||+.|++++|.+.++++.+++|+++...+++++++|+++|+++|++|+.|||++
T Consensus 142 ~~~-~~~~~~y~~wi~~y~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~a 207 (210)
T PF03070_consen 142 KLR-APEDNPYQEWIDMYASEEFEAFVEWLEELLDELAAEASDEERERLEEIFRRSCELEYDFWDAA 207 (210)
T ss_dssp HCS-TTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-CCCCccHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 643 357789999999999999999999999999999988899999999999999999999999998
No 6
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=99.94 E-value=4.3e-26 Score=229.91 Aligned_cols=210 Identities=20% Similarity=0.320 Sum_probs=189.3
Q ss_pred CCCcchHHHHHHHHc--HHHHHHhhcCHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 013025 10 SPEEEGLARRLWIKF--KRESVFAMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAKLSISEL 87 (451)
Q Consensus 10 ~~~~~~~~~~Lw~~~--~~~~~~~~~HPFv~~La~GtL~~~~F~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~l~~~ 87 (451)
|-.++.|...|.... .+.|...++|+|+..++.|||++..|+.||.|||+||.+|+|+++....+.+..++++.-...
T Consensus 305 P~k~g~f~~yl~~hpkv~p~W~s~inh~fv~~~~~Gtl~~~~fq~~l~qdy~ylIn~ara~~v~g~ks~~i~~ie~~~~i 384 (523)
T KOG2598|consen 305 PYKPGSFFNYLINHPKVKPKWDSYINHEFVKQLADGTLERKKFQDYLEQDYLYLINYARAHGVAGSKSPTIEDIEKEAVI 384 (523)
T ss_pred CCCcHHHHHHHhhCcccChhHHHHhhHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCcHHHHHHHhHH
Confidence 334478888888764 689999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchh--ccCCChHHHHHHHHHHHHhc-CCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHH
Q 013025 88 RKGVLEELKMHDSFVKEWGTDLAK--MATVNSATVKYTEFLLATAS-GKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCM 164 (451)
Q Consensus 88 ~~~i~~E~~~h~~~~~~~gi~~~~--~~~~~pat~aYt~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~PC~ 164 (451)
...+.+|+.+|.++++.+|++..+ .-+++|++++|.+|+..+++ |++ .++..|+.|
T Consensus 385 v~~v~~e~~~h~~l~e~~Gv~~~d~~~~~~~pa~~Aysry~~d~~~~g~~-------------------~~l~~a~~p-- 443 (523)
T KOG2598|consen 385 VQHVREELVQHVRLREEYGVSDPDYLSCKKGPALRAYSRYINDTGRRGNW-------------------QELVIALNP-- 443 (523)
T ss_pred HHHHHhhccchHHHHHHhCCCchhhhhcCccHHHHHHHHHhhhhhcccCh-------------------hhhhhhhch--
Confidence 888899999999999999999874 33459999999999999997 543 367799999
Q ss_pred HHHHHHHHHHHhhccCCCCCccchhhhhhcCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhccC
Q 013025 165 RLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEVEFFCAQ 243 (451)
Q Consensus 165 ~~Y~~ig~~l~~~~~~~~~~~~Y~~WI~~Yss~~f~~~v~~l~~~ld~~~~~~~~~~~~~l~~iF~~a~~lE~~Fwd~a 243 (451)
|..+..++..... +.++.+|.+|+++|++.++...+++..+.++...+..++++.+.+..+|.++|.+|..||+.+
T Consensus 444 --y~~~l~~lk~~~~-as~g~vy~~w~e~~~~~~~~~ai~~g~~~l~~i~~~~~pe~~~~l~~i~~~~~~~Et~fw~t~ 519 (523)
T KOG2598|consen 444 --YVFALDKLKDEIT-ASEGSVYVEWVETYSSSWYTSAIDEGERLLEHIVETLSPEKLQTLVTIFARVTEFETLFWTTA 519 (523)
T ss_pred --hhHHHHHHHhhcc-cCCCCceeehhhhccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 8888888877653 567899999999999999999999999999999999999999999999999999999999988
No 7
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.7e-15 Score=138.69 Aligned_cols=120 Identities=19% Similarity=0.249 Sum_probs=94.1
Q ss_pred CCeEEEeccCCccchhhcHHHHHHHHHHhCCCCCCCCcccccccccCCCCCccHhHHHHHHHHH---HHHHHHhcCCcch
Q 013025 262 DRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEE---YEQCIESFMPSEK 338 (451)
Q Consensus 262 ~~~~ii~DFDgTIT~~DTi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~Y~~~---y~~~~~~~~p~~~ 338 (451)
++.++++|||||||.+|....|.. ++ +.+.|..+.+.++++ +++....
T Consensus 2 kk~vi~sDFDGTITl~Ds~~~itd-------tf----------------~~~e~k~l~~~vls~tiS~rd~~g~------ 52 (220)
T COG4359 2 KKPVIFSDFDGTITLNDSNDYITD-------TF----------------GPGEWKALKDGVLSKTISFRDGFGR------ 52 (220)
T ss_pred CceEEEecCCCceEecchhHHHHh-------cc----------------CchHHHHHHHHHhhCceeHHHHHHH------
Confidence 466899999999999999999988 33 456899888877776 1222111
Q ss_pred hccCCHHHHHHHHHhccHHHHHHHHHHHHhCcCC--CCCHHHHHHHhh-cCcccccHHHHHHHHHHcCCCCCcEEEEecc
Q 013025 339 VENFNYETLHKALEQLSHFEKRANSRVIESGVLK--GINLEDIKKAGE-RLSLQDGCTTFFQKVVKNENLNANVHVLSYC 415 (451)
Q Consensus 339 ~~~~~~~~e~~~l~~l~~vE~~S~~~v~~s~~F~--Gi~~~~~~~~~~-~v~lr~gf~efl~~~~~~~~~~~~~~IvS~n 415 (451)
.|. +.+.+++-+... ++.|||||.+|+.+|++++ +||+|||+|
T Consensus 53 -------------------------------mf~~i~~s~~Eile~llk~i~Idp~fKef~e~ike~d---i~fiVvSsG 98 (220)
T COG4359 53 -------------------------------MFGSIHSSLEEILEFLLKDIKIDPGFKEFVEWIKEHD---IPFIVVSSG 98 (220)
T ss_pred -------------------------------HHHhcCCCHHHHHHHHHhhcccCccHHHHHHHHHHcC---CCEEEEeCC
Confidence 122 235566666555 6999999999999999999 999999999
Q ss_pred cCHHHHHHhhccC-------------------------------CCcccchhhHHHHHhhh
Q 013025 416 WCGDLIRASFSSG-------------------------------IHIQLWKTEVMKHTMTH 445 (451)
Q Consensus 416 ws~~fI~~~L~~~-------------------------------~~~~~ck~~v~~~~~~~ 445 (451)
. ++||+.+|.+. ..+|.||++||+++..-
T Consensus 99 m-~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~~vI~~l~e~ 158 (220)
T COG4359 99 M-DPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKSSVIHELSEP 158 (220)
T ss_pred C-chHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcchhHHHhhcC
Confidence 9 99999988543 57899999999998653
No 8
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.38 E-value=1.7e-12 Score=123.82 Aligned_cols=116 Identities=14% Similarity=0.123 Sum_probs=86.0
Q ss_pred EEeccCCccchhhcHHHHHHHHHHhCCCCCCCCcccccccccCCCCCccHhHHHHHHHHH---HHHHHHhcCCcchhccC
Q 013025 266 IFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEE---YEQCIESFMPSEKVENF 342 (451)
Q Consensus 266 ii~DFDgTIT~~DTi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~Y~~~---y~~~~~~~~p~~~~~~~ 342 (451)
++||||||||.+||+..+++ ++ ..+.|..+.+.|+++ +++++.
T Consensus 2 ~~fDFDgTit~~d~~~~~~~-------~~----------------~~~~~~~~~~~~~~g~~~~~e~~~----------- 47 (214)
T TIGR03333 2 IICDFDGTITNNDNIISIMK-------QF----------------APPEWEALKDGVLSKTLSIQEGVG----------- 47 (214)
T ss_pred EEeccCCCCCcchhHHHHHH-------Hh----------------CcHHHHHHHHHHHcCCccHHHHHH-----------
Confidence 79999999999999988887 11 246898888877775 222221
Q ss_pred CHHHHHHHHHhccHHHHHHHHHHHHhCcCCCC---CHHHHHHHhh-cCcccccHHHHHHHHHHcCCCCCcEEEEecccCH
Q 013025 343 NYETLHKALEQLSHFEKRANSRVIESGVLKGI---NLEDIKKAGE-RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCG 418 (451)
Q Consensus 343 ~~~~e~~~l~~l~~vE~~S~~~v~~s~~F~Gi---~~~~~~~~~~-~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~ 418 (451)
+.|+++ ..+++.++++ ++.++||+.+|+++++++| +++.|||.+. +
T Consensus 48 --------------------------~~~~~~~~~~~~~~~~~~~~~~~l~pg~~e~l~~l~~~g---~~~~IvS~~~-~ 97 (214)
T TIGR03333 48 --------------------------RMFGLLPSSLKEEITSFVLETAEIREGFREFVAFINEHG---IPFYVISGGM-D 97 (214)
T ss_pred --------------------------HHHhhCCCchHHHHHHHHHhcCcccccHHHHHHHHHHCC---CeEEEECCCc-H
Confidence 223444 2357777654 6899999999999999998 9999999997 6
Q ss_pred HHHHHhhccC-------------------------------CCcccchhhHHHHHhhh
Q 013025 419 DLIRASFSSG-------------------------------IHIQLWKTEVMKHTMTH 445 (451)
Q Consensus 419 ~fI~~~L~~~-------------------------------~~~~~ck~~v~~~~~~~ 445 (451)
.+|+.++.+. +.||.||..+++++..+
T Consensus 98 ~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~~l~~~~~~ 155 (214)
T TIGR03333 98 FFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPSLIRKLSEP 155 (214)
T ss_pred HHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHHHHHHHhhc
Confidence 7777655332 14688999999987643
No 9
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.36 E-value=2.7e-12 Score=122.79 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=86.7
Q ss_pred CCeEEEeccCCccchhhcHHHHHHHHHHhCCCCCCCCcccccccccCCCCCccHhHHHHHHHHHHHHHHHhcCCcchhcc
Q 013025 262 DRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVEN 341 (451)
Q Consensus 262 ~~~~ii~DFDgTIT~~DTi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~Y~~~y~~~~~~~~p~~~~~~ 341 (451)
++.+++||||||||..|++..+++ .+ ..+.|+.+.+.|+++ +..
T Consensus 2 ~~~~vifDfDgTi~~~d~~~~~~~---~~--------------------~~~~~~~i~~~~~~g------~~~------- 45 (219)
T PRK09552 2 MSIQIFCDFDGTITNNDNIIAIMK---KF--------------------APPEWEELKDDILSQ------ELS------- 45 (219)
T ss_pred CCcEEEEcCCCCCCcchhhHHHHH---Hh--------------------CHHHHHHHHHHHHhC------CcC-------
Confidence 456899999999999999876554 11 124788888877775 110
Q ss_pred CCHHHHHHHHHhccHHHHHHHHHHHHhCcCCCCCHHHHHHHh-hcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHH
Q 013025 342 FNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAG-ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDL 420 (451)
Q Consensus 342 ~~~~~e~~~l~~l~~vE~~S~~~v~~s~~F~Gi~~~~~~~~~-~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~f 420 (451)
+.+.++ ++. ..+.+...+++.++. +++.++||+.+|++.++++| +++.|||.++ +.+
T Consensus 46 --------~~~~~~--------~~~--~~l~~~~~~~~~~~~~~~~~l~pG~~e~l~~l~~~g---~~~~IvS~~~-~~~ 103 (219)
T PRK09552 46 --------IQEGVG--------QMF--QLLPSNLKEEIIQFLLETAEIREGFHEFVQFVKENN---IPFYVVSGGM-DFF 103 (219)
T ss_pred --------HHHHHH--------HHH--HhCCCCchHHHHHHHHhCCCcCcCHHHHHHHHHHcC---CeEEEECCCc-HHH
Confidence 111111 000 113333446676654 57999999999999999999 9999999999 778
Q ss_pred HHHhhccC-------------------------------CCcccchhhHHHHHh
Q 013025 421 IRASFSSG-------------------------------IHIQLWKTEVMKHTM 443 (451)
Q Consensus 421 I~~~L~~~-------------------------------~~~~~ck~~v~~~~~ 443 (451)
|+.+|.+. +.||.||..+++++.
T Consensus 104 i~~il~~~~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~l~~~~ 157 (219)
T PRK09552 104 VYPLLQGLIPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSLIRKLS 157 (219)
T ss_pred HHHHHHHhCCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHHHHHhc
Confidence 88877542 126789999998875
No 10
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.30 E-value=6.1e-12 Score=121.85 Aligned_cols=107 Identities=19% Similarity=0.316 Sum_probs=78.9
Q ss_pred eEEEeccCCccchhhcHHHHHHHHHHhCCCCCCCCcccccccccCCCCCccHhHHHHHHHHH-HHHHHHhcCCcchhccC
Q 013025 264 LIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEE-YEQCIESFMPSEKVENF 342 (451)
Q Consensus 264 ~~ii~DFDgTIT~~DTi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~Y~~~-y~~~~~~~~p~~~~~~~ 342 (451)
++++||||+||+..||-..+.+.. .+. ..+..+.+.|-++ +.+++...+
T Consensus 1 ~LvvfDFD~TIvd~dsd~~v~~~l---~~~-------------------~~~~~l~~~~~~~~wt~~m~~vl-------- 50 (234)
T PF06888_consen 1 ILVVFDFDHTIVDQDSDDWVIELL---PPE-------------------ELPEELRESYPKGGWTEYMDRVL-------- 50 (234)
T ss_pred CEEEEeCCCCccCCccHHHHHHhc---CCc-------------------ccHHHHHHhccccchHHHHHHHH--------
Confidence 479999999999999999999943 211 1234555544422 233333222
Q ss_pred CHHHHHHHHHhccHHHHHHHHHHHHhCcCCCCCHHHHHHHhhcCcccccHHHHHHHHHH--cCCCCCcEEEEecccCHHH
Q 013025 343 NYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGERLSLQDGCTTFFQKVVK--NENLNANVHVLSYCWCGDL 420 (451)
Q Consensus 343 ~~~~e~~~l~~l~~vE~~S~~~v~~s~~F~Gi~~~~~~~~~~~v~lr~gf~efl~~~~~--~~~~~~~~~IvS~nws~~f 420 (451)
+.|. =+|+|.+++.+..+++++.|||.+|++.+.+ .| .+++|||++- ..|
T Consensus 51 ---------~~L~---------------~~gvt~~~I~~~l~~ip~~pgm~~~l~~l~~~~~~---~~~~IiSDaN-s~f 102 (234)
T PF06888_consen 51 ---------QLLH---------------EQGVTPEDIRDALRSIPIDPGMKELLRFLAKNQRG---FDLIIISDAN-SFF 102 (234)
T ss_pred ---------HHHH---------------HcCCCHHHHHHHHHcCCCCccHHHHHHHHHhcCCC---ceEEEEeCCc-HhH
Confidence 1111 2379999999999999999999999999954 56 9999999998 889
Q ss_pred HHHhhccC
Q 013025 421 IRASFSSG 428 (451)
Q Consensus 421 I~~~L~~~ 428 (451)
|+.+|+++
T Consensus 103 I~~iL~~~ 110 (234)
T PF06888_consen 103 IETILEHH 110 (234)
T ss_pred HHHHHHhC
Confidence 99999766
No 11
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.05 E-value=3.7e-10 Score=103.27 Aligned_cols=123 Identities=16% Similarity=0.124 Sum_probs=83.2
Q ss_pred EEEeccCCccchhhc-HHHHHHHHHHhCCCCCCCCcccccccccCCCCCccHhHHHHHHHHHHHHHHHhcCCcchhccCC
Q 013025 265 IIFSDFDLTCTIVDS-SAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVENFN 343 (451)
Q Consensus 265 ~ii~DFDgTIT~~DT-i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~Y~~~y~~~~~~~~p~~~~~~~~ 343 (451)
+++||||||||..|| ...+..+. . ..+.|..+.+.|+.+-..
T Consensus 1 l~~fD~DgTl~~~~s~~~~~~~~~-----~-----------------~~~~~~~~~~~~~~g~i~--------------- 43 (177)
T TIGR01488 1 LAIFDFDGTLTRQDSLIDLLAKLL-----G-----------------TNDEVIELTRLAPSGRIS--------------- 43 (177)
T ss_pred CEEecCccccccchhhHHHHHHHh-----C-----------------ChHHHHHHHHHHHCCCCC---------------
Confidence 479999999999999 44544433 1 124677777777665111
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhCcCCCCCHHHHHH-H-hhcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHH
Q 013025 344 YETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKK-A-GERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLI 421 (451)
Q Consensus 344 ~~~e~~~l~~l~~vE~~S~~~v~~s~~F~Gi~~~~~~~-~-~~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI 421 (451)
|.+.++ .....++|...+++.+ + .+.+.++||+.++++.++++| +++.|+|.+. +.+|
T Consensus 44 ------~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g---~~~~ivS~~~-~~~i 103 (177)
T TIGR01488 44 ------FEDALG----------RRLALLHRSRSEEVAKEFLARQVALRPGARELISWLKERG---IDTVIVSGGF-DFFV 103 (177)
T ss_pred ------HHHHHH----------HHHHHhCCCCHHHHHHHHHHhcCCcCcCHHHHHHHHHHCC---CEEEEECCCc-HHHH
Confidence 111111 1112356666556665 4 457889999999999999999 9999999998 7788
Q ss_pred HHhhccCC--------------------------CcccchhhHHHHHhh
Q 013025 422 RASFSSGI--------------------------HIQLWKTEVMKHTMT 444 (451)
Q Consensus 422 ~~~L~~~~--------------------------~~~~ck~~v~~~~~~ 444 (451)
+.++.+.| ..+.||.++++++..
T Consensus 104 ~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~~ 152 (177)
T TIGR01488 104 EPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELLE 152 (177)
T ss_pred HHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHHH
Confidence 87765431 235788888887654
No 12
>PLN02954 phosphoserine phosphatase
Probab=98.99 E-value=2e-09 Score=102.64 Aligned_cols=112 Identities=17% Similarity=0.141 Sum_probs=74.8
Q ss_pred CCCeEEEeccCCccchhhcHHHHHHHHHHhCCCCCCCCcccccccccCCCCCccHhHHHHHHHHHHHHHHHhcCCcchhc
Q 013025 261 GDRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVE 340 (451)
Q Consensus 261 ~~~~~ii~DFDgTIT~~DTi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~Y~~~y~~~~~~~~p~~~~~ 340 (451)
....+++||||||||.+|++..+++ .+. ..+.|..+.+.|+.+. .+
T Consensus 10 ~~~k~viFDfDGTL~~~~~~~~~~~---~~g-------------------~~~~~~~~~~~~~~g~-------~~----- 55 (224)
T PLN02954 10 RSADAVCFDVDSTVCVDEGIDELAE---FCG-------------------AGEAVAEWTAKAMGGS-------VP----- 55 (224)
T ss_pred ccCCEEEEeCCCcccchHHHHHHHH---HcC-------------------ChHHHHHHHHHHHCCC-------CC-----
Confidence 3456888999999999999988877 111 2357788877666541 11
Q ss_pred cCCHHHHHHHHHhccHHHHHHHHHHHHhCcCCCCCHHHHHHHhhc--CcccccHHHHHHHHHHcCCCCCcEEEEecccCH
Q 013025 341 NFNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGER--LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCG 418 (451)
Q Consensus 341 ~~~~~~e~~~l~~l~~vE~~S~~~v~~s~~F~Gi~~~~~~~~~~~--v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~ 418 (451)
+.+.++. ++ +.++ .+.+++.+..+. ..++||+.++++.++++| +++.|||.+. +
T Consensus 56 ---------~~~~~~~-------~~---~~~~-~~~~~~~~~~~~~~~~l~pg~~e~l~~l~~~g---~~~~IvS~~~-~ 111 (224)
T PLN02954 56 ---------FEEALAA-------RL---SLFK-PSLSQVEEFLEKRPPRLSPGIPELVKKLRARG---TDVYLVSGGF-R 111 (224)
T ss_pred ---------HHHHHHH-------HH---HHcC-CCHHHHHHHHHHccCCCCccHHHHHHHHHHCC---CEEEEECCCc-H
Confidence 0011110 00 0011 244555555543 568999999999999999 9999999999 7
Q ss_pred HHHHHhhccCCC
Q 013025 419 DLIRASFSSGIH 430 (451)
Q Consensus 419 ~fI~~~L~~~~~ 430 (451)
.+++.++...|+
T Consensus 112 ~~i~~~l~~~gi 123 (224)
T PLN02954 112 QMIAPVAAILGI 123 (224)
T ss_pred HHHHHHHHHhCC
Confidence 788888776544
No 13
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.96 E-value=6.5e-09 Score=95.68 Aligned_cols=126 Identities=15% Similarity=0.148 Sum_probs=85.9
Q ss_pred CeEEEeccCCccchhhcHHHHHHHHHHhCCCCCCCCcccccccccCCCCCccHhHHHHHHHHHHHHHHHhcCCcchhccC
Q 013025 263 RLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVENF 342 (451)
Q Consensus 263 ~~~ii~DFDgTIT~~DTi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~Y~~~y~~~~~~~~p~~~~~~~ 342 (451)
+.++||||||||+..|+...+.+. +. ++.|..+.+.+.......
T Consensus 1 ~~~iiFD~dgTL~~~~~~~~~~~~---~~--------------------~~~~~~~~~~~~~~~~~~------------- 44 (188)
T TIGR01489 1 KVVVVSDFDGTITLNDSDDWITDK---FG--------------------PPEANRLLDGVLSKTLSI------------- 44 (188)
T ss_pred CeEEEEeCCCcccCCCchHHHHHh---cC--------------------cchhhHHHHHHhhcCCch-------------
Confidence 468999999999999999887762 11 235666665444321000
Q ss_pred CHHHHHHHHHhccHHHHHHHHHHHHhCcCCCCCHHHHHHHhhcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHH
Q 013025 343 NYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIR 422 (451)
Q Consensus 343 ~~~~e~~~l~~l~~vE~~S~~~v~~s~~F~Gi~~~~~~~~~~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~ 422 (451)
.|.+.+.. .+.. .|++.+++.+..+++.++||+.++++.++++| ++++|+|.+- ...++
T Consensus 45 ------~~~~~~~~-------~~~~----~~~~~~~~~~~~~~~~l~~g~~~ll~~l~~~g---~~~~i~S~~~-~~~~~ 103 (188)
T TIGR01489 45 ------KFMDRRMK-------GLLP----SGLKEDEILEVLKSAPIDPGFKEFIAFIKEHG---IDFIVISDGN-DFFID 103 (188)
T ss_pred ------HHHHHHHH-------HHhh----cCCCHHHHHHHHHhCCCCccHHHHHHHHHHcC---CcEEEEeCCc-HHHHH
Confidence 01111110 0111 35778888888888999999999999999988 9999999764 55566
Q ss_pred HhhccCC----------------------------------CcccchhhHHHHHhhh
Q 013025 423 ASFSSGI----------------------------------HIQLWKTEVMKHTMTH 445 (451)
Q Consensus 423 ~~L~~~~----------------------------------~~~~ck~~v~~~~~~~ 445 (451)
.++.+.+ .+|+||.++++++..+
T Consensus 104 ~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K~~~~~~~~~~ 160 (188)
T TIGR01489 104 PVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCKGKVIHKLSEP 160 (188)
T ss_pred HHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCCHHHHHHHHHhh
Confidence 5554432 3567999999998876
No 14
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.90 E-value=7.9e-09 Score=98.18 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=58.6
Q ss_pred CCCCCHHHHHHHhhcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCC--------------------
Q 013025 371 LKGINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIH-------------------- 430 (451)
Q Consensus 371 F~Gi~~~~~~~~~~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~-------------------- 430 (451)
|.+.+.+.+.+..+.+.++||+.+|++.++++| ++++|||.++ ..+++.+++..|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g---~~~~IvS~~~-~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~ 144 (219)
T TIGR00338 69 LKGLPVELLKEVRENLPLTEGAEELVKTLKEKG---YKVAVISGGF-DLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVE 144 (219)
T ss_pred hCCCCHHHHHHHHhcCCcCCCHHHHHHHHHHCC---CEEEEECCCc-HHHHHHHHHHcCCCceEeeEEEEECCEEEEEec
Confidence 467788888888888999999999999999999 9999999998 7888888865542
Q ss_pred ----cccchhhHHHHHhhhh
Q 013025 431 ----IQLWKTEVMKHTMTHY 446 (451)
Q Consensus 431 ----~~~ck~~v~~~~~~~~ 446 (451)
++.||+++.++.+..+
T Consensus 145 ~~~~~~~~k~~~~~~~~~~~ 164 (219)
T TIGR00338 145 GPIVDASYKGKTLLILLRKE 164 (219)
T ss_pred CcccCCcccHHHHHHHHHHc
Confidence 1236888888877654
No 15
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=98.89 E-value=6.6e-09 Score=103.03 Aligned_cols=129 Identities=21% Similarity=0.265 Sum_probs=93.2
Q ss_pred CCCeEEEeccCCccchhh--------cHHHHHHHHHHhCCCCCCCCcccccccccCCCCCccHhHHHHHHHHHHHHHHHh
Q 013025 261 GDRLIIFSDFDLTCTIVD--------SSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIES 332 (451)
Q Consensus 261 ~~~~~ii~DFDgTIT~~D--------Ti~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~Y~~~y~~~~~~ 332 (451)
+.++.||.|||-|||..= |+.-+.+ .=..+.+.|.+...++...
T Consensus 20 ~~~lqvisDFD~Tlt~~~~~~g~~~~s~~~~~~----------------------------~~~~~~~~~~~~~~~l~~~ 71 (277)
T TIGR01544 20 AAKLQIISDFDYTLSRFSYEDGKRCPTCHGIFD----------------------------NCKLLTDECRKKLLQLKEK 71 (277)
T ss_pred hhheEEeeccCccceeeecCCCCCCcchHhHHh----------------------------hCCCCCHHHHHHHHHHHhh
Confidence 578999999999999641 2222222 1133456788888888889
Q ss_pred cCCcchhccCCHHHHHHHHHhccHHHHHHHHHHHHhCcCCCC--CHHHHHHHhh--cCcccccHHHHHHHHHHcCCCCCc
Q 013025 333 FMPSEKVENFNYETLHKALEQLSHFEKRANSRVIESGVLKGI--NLEDIKKAGE--RLSLQDGCTTFFQKVVKNENLNAN 408 (451)
Q Consensus 333 ~~p~~~~~~~~~~~e~~~l~~l~~vE~~S~~~v~~s~~F~Gi--~~~~~~~~~~--~v~lr~gf~efl~~~~~~~~~~~~ 408 (451)
|.|.+.+...+.++-..|...-- + ....++.|. +++++.++.+ .+.+||||.+|++.|+++| +|
T Consensus 72 Y~PiE~d~~~~~~eK~~~m~eWw-----~----k~~~l~~~~~~~~e~i~~~v~~~~l~l~pG~~efl~~L~~~G---Ip 139 (277)
T TIGR01544 72 YYPIEVDPVLTVEEKYPYMVEWW-----T----KSHGLLVQQAFPKAKIKEIVAESDVMLKDGYENFFDKLQQHS---IP 139 (277)
T ss_pred ccceecCCCCChHHhhhHHHHHH-----H----HHHHHHhcCCCCHHHHHHHHhhcCCccCcCHHHHHHHHHHCC---Cc
Confidence 99987554344444444432211 0 122455555 9999999997 8999999999999999999 99
Q ss_pred EEEEecccCHHHHHHhhccCCC
Q 013025 409 VHVLSYCWCGDLIRASFSSGIH 430 (451)
Q Consensus 409 ~~IvS~nws~~fI~~~L~~~~~ 430 (451)
+.|+|+|+ +.+|+.+|++.|+
T Consensus 140 v~IvS~G~-~~~Ie~vL~~lgl 160 (277)
T TIGR01544 140 VFIFSAGI-GNVLEEVLRQAGV 160 (277)
T ss_pred EEEEeCCc-HHHHHHHHHHcCC
Confidence 99999999 7899999986544
No 16
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.74 E-value=3.2e-08 Score=93.66 Aligned_cols=112 Identities=16% Similarity=0.299 Sum_probs=86.5
Q ss_pred CCCCeEEEeccCCccchhhcHHHHHHHHHHhCCCCCCCCcccccccccCCCCCccHhHHHHHHHHH-HHHHHHhcCCcch
Q 013025 260 AGDRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEE-YEQCIESFMPSEK 338 (451)
Q Consensus 260 ~~~~~~ii~DFDgTIT~~DTi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~Y~~~-y~~~~~~~~p~~~ 338 (451)
..+|++++||||.||...|+=..+.+.+ | ....+.++.+.|-++ |.+++.+..-
T Consensus 10 ~~~ril~~FDFD~TIid~dSD~wVv~~l----p------------------~~~l~~qL~~t~p~~~Wne~M~rv~k--- 64 (256)
T KOG3120|consen 10 SSPRILLVFDFDRTIIDQDSDNWVVDEL----P------------------TTDLFNQLRDTYPKGFWNELMDRVFK--- 64 (256)
T ss_pred cCCcEEEEEecCceeecCCcchHHHHhc----c------------------cchhHHHHHHhcccchHHHHHHHHHH---
Confidence 3478899999999999999999999865 1 123456666666655 4555544321
Q ss_pred hccCCHHHHHHHHHhccHHHHHHHHHHHHhCcCCCCCHHHHHHHhhcCcccccHHHHHHHHHHcCCCCCcEEEEecccCH
Q 013025 339 VENFNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCG 418 (451)
Q Consensus 339 ~~~~~~~~e~~~l~~l~~vE~~S~~~v~~s~~F~Gi~~~~~~~~~~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~ 418 (451)
.|. =+|++.+++++..+.+.+.||+.+.++.+.+.|+ .++.|||+-= .
T Consensus 65 --------------~Lh---------------eqgv~~~~ik~~~r~iP~~Pgmv~lik~~ak~g~--~eliIVSDaN-s 112 (256)
T KOG3120|consen 65 --------------ELH---------------EQGVRIAEIKQVLRSIPIVPGMVRLIKSAAKLGC--FELIIVSDAN-S 112 (256)
T ss_pred --------------HHH---------------HcCCCHHHHHHHHhcCCCCccHHHHHHHHHhCCC--ceEEEEecCc-h
Confidence 111 2689999999999999999999999999999884 5999999854 5
Q ss_pred HHHHHhhccC
Q 013025 419 DLIRASFSSG 428 (451)
Q Consensus 419 ~fI~~~L~~~ 428 (451)
.||+..|+++
T Consensus 113 fFIe~~Lea~ 122 (256)
T KOG3120|consen 113 FFIEEILEAA 122 (256)
T ss_pred hHHHHHHHHc
Confidence 7888887665
No 17
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=98.72 E-value=8e-08 Score=97.68 Aligned_cols=128 Identities=16% Similarity=0.136 Sum_probs=92.1
Q ss_pred CCeEEEeccCCccchhhcHHHHHHHHHHhCCCCCCCCcccccccccCCCCCccHhHHHHHHHHHHHHHHHhcCCcchhcc
Q 013025 262 DRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVEN 341 (451)
Q Consensus 262 ~~~~ii~DFDgTIT~~DTi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~Y~~~y~~~~~~~~p~~~~~~ 341 (451)
.+.+++||||||++..+++..+++.. . ....+..+++.++.+
T Consensus 109 ~~~LvvfDmDGTLI~~e~i~eia~~~-----g-----------------~~~~v~~it~~~m~G---------------- 150 (322)
T PRK11133 109 TPGLLVMDMDSTAIQIECIDEIAKLA-----G-----------------TGEEVAEVTERAMRG---------------- 150 (322)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHh-----C-----------------CchHHHHHHHHHHcC----------------
Confidence 45699999999999999999998843 1 234666666655543
Q ss_pred CCHHHHHHHHHhccHHHHHHHHHHHHhCcCCCCCHHHHHHHhhcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHH
Q 013025 342 FNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLI 421 (451)
Q Consensus 342 ~~~~~e~~~l~~l~~vE~~S~~~v~~s~~F~Gi~~~~~~~~~~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI 421 (451)
|+.|...++ .|+ ..++|...+-+.+..+++.++||+.++++.+++.| +++.|+|.++ ..|+
T Consensus 151 -----eldf~esl~-------~rv---~~l~g~~~~il~~v~~~l~l~pGa~elL~~Lk~~G---~~~aIvSgg~-~~~~ 211 (322)
T PRK11133 151 -----ELDFEASLR-------QRV---ATLKGADANILQQVRENLPLMPGLTELVLKLQALG---WKVAIASGGF-TYFA 211 (322)
T ss_pred -----CcCHHHHHH-------HHH---HHhCCCCHHHHHHHHHhCCCChhHHHHHHHHHHcC---CEEEEEECCc-chhH
Confidence 112222222 122 24677776667777788999999999999999999 9999999999 5677
Q ss_pred HHhhccCCC------------------------cccchhhHHHHHhhhh
Q 013025 422 RASFSSGIH------------------------IQLWKTEVMKHTMTHY 446 (451)
Q Consensus 422 ~~~L~~~~~------------------------~~~ck~~v~~~~~~~~ 446 (451)
+..+.+.|+ ++.+|.++.+++..++
T Consensus 212 ~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~l 260 (322)
T PRK11133 212 DYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQEY 260 (322)
T ss_pred HHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHHc
Confidence 776654432 2357888888887654
No 18
>PRK05157 pyrroloquinoline quinone biosynthesis protein PqqC; Provisional
Probab=98.70 E-value=2.4e-06 Score=83.28 Aligned_cols=205 Identities=13% Similarity=0.071 Sum_probs=138.3
Q ss_pred CCCCcchHHHHHHHHcHHHHHHhhcCHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013025 9 PSPEEEGLARRLWIKFKRESVFAMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAKLSISELR 88 (451)
Q Consensus 9 ~~~~~~~~~~~Lw~~~~~~~~~~~~HPFv~~La~GtL~~~~F~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~l~~~~ 88 (451)
.+-.++.|...|-.... ...++|||-+.+.+|+|+++.++-|..|=|+|-..+.+..+-++|+++|.+....+.+
T Consensus 7 ~~~s~~eF~~~L~~~~~---~yh~~HPF~~~~~~Gklt~~qlq~wa~nrYyyq~~~P~kdaaI~S~c~D~e~Rr~w~~-- 81 (246)
T PRK05157 7 ALLSPEEFEAALRAIGA---RYHIHHPFHRLLHEGKLTREQIQAWVANRFYYQINIPLKDAAILSNCPDRETRREWRQ-- 81 (246)
T ss_pred CCCCHHHHHHHHHHHHH---hhcccChHHHHHHcCCCCHHHHHHHHHHhchhhccchHHHHHHHHcCCCHHHHHHHHH--
Confidence 33344567777655441 2235899999999999999999999999999999999999999999999988655533
Q ss_pred HHHHH-H--------HHHHHHHHHHcCCCchh--cc-CCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhhhhhHHHH
Q 013025 89 KGVLE-E--------LKMHDSFVKEWGTDLAK--MA-TVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVAAYT 156 (451)
Q Consensus 89 ~~i~~-E--------~~~h~~~~~~~gi~~~~--~~-~~~pat~aYt~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 156 (451)
++.+ | +++..++.+.+|++.++ +. ...|.|+..++-....+.... |. ++
T Consensus 82 -ri~d~dG~~~~~ghie~Wlrf~ealGl~re~v~s~~~~lP~tr~aVday~~~~r~~~------------~~------ea 142 (246)
T PRK05157 82 -RILDHDGDGGGEGGIERWLRLGEAVGLDRDYVLSLRGVLPGVRFAVDAYVNFARRAP------------WL------EA 142 (246)
T ss_pred -HHHHhcCCCCCCCcHHHHHHHHHHcCCCHHHHhccccCChHHHHHHHHHHHHHccCC------------HH------HH
Confidence 3333 2 57889999999999873 34 378999999999888886332 33 56
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCccchhhhhhcCChhHHHHH-------HHHHHHHHHHhccCCHHHHHHHHHHH
Q 013025 157 LGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASA-------LQNEDLLDKLSVSLTGEELDIIEKLY 229 (451)
Q Consensus 157 l~Al~PC~~~Y~~ig~~l~~~~~~~~~~~~Y~~WI~~Yss~~f~~~v-------~~l~~~ld~~~~~~~~~~~~~l~~iF 229 (451)
+++++- +.-=-.|.+.-.+.. ..+..||+.=+=.-|.... +...+.+-+.+ .++++++++.++-
T Consensus 143 vas~lt-E~~~P~I~~~ri~gl------~~~Y~~~~~e~l~yF~~h~~~a~~Dvehal~~~l~~~--~t~e~q~~al~al 213 (246)
T PRK05157 143 VASSLT-ELFAPQIHQERLAGW------PEHYPWIDPEGLAYFRSRLTQAPRDVEHGLAYVLDHA--TTREQQERALEAL 213 (246)
T ss_pred HHHHHH-HHhhhHHHHHHHHHH------HHHCCCCCHHHHHHHHHHhhccchhHHHHHHHHHHHc--CCHHHHHHHHHHH
Confidence 666665 433333332221100 0122344321111122211 22223333333 3778899999999
Q ss_pred HHHHHHHHHhhccCCCC
Q 013025 230 HQAMKLEVEFFCAQPLA 246 (451)
Q Consensus 230 ~~a~~lE~~Fwd~a~~~ 246 (451)
...|..=+.|+|+.+..
T Consensus 214 ~~k~d~Lw~~LDai~~a 230 (246)
T PRK05157 214 QFKLDVLWSMLDALYMA 230 (246)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988544
No 19
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.65 E-value=1.6e-07 Score=87.49 Aligned_cols=54 Identities=11% Similarity=0.038 Sum_probs=46.5
Q ss_pred CCCHHHHHHHhhcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCC
Q 013025 373 GINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIH 430 (451)
Q Consensus 373 Gi~~~~~~~~~~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~ 430 (451)
+.+.+++.+..+++.++||+.++++.++++| ++++|||.++ +.+++.++++.|+
T Consensus 66 ~~~~~~~~~~~~~~~~~~g~~e~l~~l~~~g---~~~~IvS~~~-~~~~~~~l~~~g~ 119 (201)
T TIGR01491 66 RLRREEVEEIFKEISLRDYAEELVRWLKEKG---LKTAIVSGGI-MCLAKKVAEKLNP 119 (201)
T ss_pred CCCHHHHHHHHHhCCCCccHHHHHHHHHHCC---CEEEEEeCCc-HHHHHHHHHHhCC
Confidence 4567778888888999999999999999999 9999999998 7888888866543
No 20
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=98.62 E-value=5.7e-06 Score=79.26 Aligned_cols=185 Identities=15% Similarity=0.158 Sum_probs=130.5
Q ss_pred hcCHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHH--HHHH---HHHHHHHHHHHc
Q 013025 32 MYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAKLSISE-LRK--GVLE---ELKMHDSFVKEW 105 (451)
Q Consensus 32 ~~HPFv~~La~GtL~~~~F~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~l~~-~~~--~i~~---E~~~h~~~~~~~ 105 (451)
..|||.+.+.+|.|+++.++-|++.-++|+++|.+.++..++|++|++......+ +.. +..+ =+++-.++...+
T Consensus 25 ~~HpF~~~m~~g~lt~~ql~~yvi~~~~~~k~~p~~lSail~rcdd~~~r~~~leni~de~~g~~e~~hidlwlr~aeAl 104 (242)
T COG5424 25 LPHPFYVAMQEGELTKEQLQGYVINRYYYQKNFPLYLSAILARCDDDDVRREWLENIMDEDNGYNEPNHIDLWLRLAEAL 104 (242)
T ss_pred CCCHHHHHHHccCCCHHHHHHHHHhhhHHHHhhhHHHHHHHhcCCcHhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHc
Confidence 7899999999999999999999999999999999999999999999887544332 111 1111 256777788999
Q ss_pred CCCchh--ccCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 013025 106 GTDLAK--MATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCMRLYAFLGKEFHALLNANEG 183 (451)
Q Consensus 106 gi~~~~--~~~~~pat~aYt~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~PC~~~Y~~ig~~l~~~~~~~~~ 183 (451)
|++.++ +.+|+|.++.=++.....+.++. | ++++++++.-+. .+.+...... .+
T Consensus 105 Gvs~eei~s~eplp~~~~av~~~~~~a~~~s------------~------~~~~aslyt~El---~apri~~~ki---~g 160 (242)
T COG5424 105 GVSREEILSHEPLPSTRFAVDTWVRFATEKS------------W------LEGAASLYTYEL---VAPRISVEKI---SG 160 (242)
T ss_pred CCCHHHHhhcCCCHHHHHHHHHHHHHhcchh------------H------HHHHHHHHHHHh---hccHHHHHHc---cC
Confidence 999873 55699999999999999986543 3 356677664332 2223222221 13
Q ss_pred CccchhhhhhcCC--------hhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhccC
Q 013025 184 NHPYTKWIDNYSS--------ESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEVEFFCAQ 243 (451)
Q Consensus 184 ~~~Y~~WI~~Yss--------~~f~~~v~~l~~~ld~~~~~~~~~~~~~l~~iF~~a~~lE~~Fwd~a 243 (451)
-+.|..|++ +.. +.-...+....+++.+++. +-|..+++.++-.+++..=+.|-|+.
T Consensus 161 l~~~~~~~~-~a~~~yf~~h~eaD~~Ha~Ealkiv~~~~~--t~E~~~~~~~~~~~~~D~lw~fLda~ 225 (242)
T COG5424 161 LPYFNGFSD-AAAYAYFREHLEADVRHAEEALKIVLELAG--TRELQDQVLDALQKSLDVLWLFLDAR 225 (242)
T ss_pred chhhcCcch-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455553 111 1223445555666666653 45677888999999999999999976
No 21
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.59 E-value=3.9e-07 Score=85.31 Aligned_cols=59 Identities=14% Similarity=0.028 Sum_probs=49.3
Q ss_pred hCcCCCCCHHHHHHHhhc-------CcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCC
Q 013025 368 SGVLKGINLEDIKKAGER-------LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIH 430 (451)
Q Consensus 368 s~~F~Gi~~~~~~~~~~~-------v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~ 430 (451)
..+|+|++.+++.++++. ..++||..++++.++++| .++.|+|.+. +.+++.++++.|+
T Consensus 61 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g---~~v~ivS~s~-~~~v~~~~~~lg~ 126 (202)
T TIGR01490 61 LDALAGLLEEDVRAIVEEFVNQKIESILYPEARDLIRWHKAEG---HTIVLVSASL-TILVKPLARILGI 126 (202)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHCC---CEEEEEeCCc-HHHHHHHHHHcCC
Confidence 456899999999888773 468999999999999999 9999999998 6788877765443
No 22
>TIGR02111 PQQ_syn_pqqC coenzyme PQQ biosynthesis protein C. This model describes the coenzyme PQQ (pyrrolo-quinoline-quinone) biosynthesis protein PqqC.In contrast to the broader model pfam05312, this model does not include related proteins likely to be functionally distinct from PqqC, such as homologs found in the Chlamydias.
Probab=98.55 E-value=5.6e-06 Score=80.10 Aligned_cols=185 Identities=13% Similarity=0.067 Sum_probs=126.4
Q ss_pred hcCHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---------HHHHHHHH
Q 013025 32 MYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAKLSISELRKGVLEE---------LKMHDSFV 102 (451)
Q Consensus 32 ~~HPFv~~La~GtL~~~~F~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~l~~~~~~i~~E---------~~~h~~~~ 102 (451)
.+|||-+.+.+|+|+++.++-|..|=|+|-..+.+..+-++|+++|.+.+..+.+ ++.+| +++..++.
T Consensus 20 ~~HPF~~~~~~GkLt~~ql~~wa~nrYyyq~~iP~kdAAi~s~c~D~e~Rr~wl~---ri~DhdG~~~~~ggie~Wlrfa 96 (239)
T TIGR02111 20 DLHPFHALLHDGKLTRDQVQAWVLNRYYYQANIPLKDAAILARCPDPQLRRIWRQ---RILDHDGDHEEDGGIERWLRLA 96 (239)
T ss_pred ccCcHHHHHhcCCCCHHHHHHHHHHhhhhhhcccHHHHHHHHcCCCHHHHHHHHH---HHHHhcCCCCCCCcHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999997655543 44332 57888999
Q ss_pred HHcCCCchh--cc-CCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013025 103 KEWGTDLAK--MA-TVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCMRLYAFLGKEFHALLN 179 (451)
Q Consensus 103 ~~~gi~~~~--~~-~~~pat~aYt~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~PC~~~Y~~ig~~l~~~~~ 179 (451)
+.+|++.++ +. ...|+|+..++=....+.... |+ ++++|++- +.-=-.|.+.-....
T Consensus 97 ealGl~re~v~s~~~~lP~trfaVday~~f~r~~~------------~~------eavasslT-E~f~P~I~~~ri~gl- 156 (239)
T TIGR02111 97 EAVGLDREYVLSTRGVLPGTRFAVDAYVHFVREKS------------LL------EAIASSLT-ELFAPQIHSERVAGM- 156 (239)
T ss_pred HHhCCCHHHHhcccCCCHHHHHHHHHHHHHHhcCC------------HH------HHHHHHHH-HHHhHHHHHHHHHhH-
Confidence 999999873 33 348999988887777775332 33 67777665 443333333222100
Q ss_pred CCCCCccchhhhhhcCChhHHHHH-------HHHHHH-HHHHhccCCHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 013025 180 ANEGNHPYTKWIDNYSSESFQASA-------LQNEDL-LDKLSVSLTGEELDIIEKLYHQAMKLEVEFFCAQPLAQ 247 (451)
Q Consensus 180 ~~~~~~~Y~~WI~~Yss~~f~~~v-------~~l~~~-ld~~~~~~~~~~~~~l~~iF~~a~~lE~~Fwd~a~~~~ 247 (451)
..+..||+.=+=.-|.... +...++ ++.. .++++++++.++-...|..=+.|+|+.+..+
T Consensus 157 -----~~~Y~~~~~e~l~yF~~r~~qa~rd~e~~l~~~l~~~---~t~e~Q~~~l~al~fk~dvLw~~LDal~~ay 224 (239)
T TIGR02111 157 -----LQHYDFIDDAALAYFRKRLTQAPRDVEFGLDYVLDHA---TTREKQEAALEALTFKCDVLWAQLDALYFAY 224 (239)
T ss_pred -----HHHCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1122355421111122211 112222 3332 3678899999999999999999999885544
No 23
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=98.54 E-value=5.9e-07 Score=85.89 Aligned_cols=57 Identities=7% Similarity=0.051 Sum_probs=44.8
Q ss_pred HhCcCCCCCHHHHHHHhh--------cCcccccHHHHHH-HHHHcCCCCCcEEEEecccCHHHHHHhhcc
Q 013025 367 ESGVLKGINLEDIKKAGE--------RLSLQDGCTTFFQ-KVVKNENLNANVHVLSYCWCGDLIRASFSS 427 (451)
Q Consensus 367 ~s~~F~Gi~~~~~~~~~~--------~v~lr~gf~efl~-~~~~~~~~~~~~~IvS~nws~~fI~~~L~~ 427 (451)
-..+|+|++.+++.+.++ .+.++||..+.++ .++++| +++.|||... +.+++.+.+.
T Consensus 66 ~~~~~~g~~~~~l~~~~~~f~~~~~~~~~l~pga~e~L~~~l~~~G---~~v~IvSas~-~~~~~~ia~~ 131 (210)
T TIGR01545 66 LWACTFGHREAHLQDLEADFVAAFRDKVTAFPLVAERLRQYLESSD---ADIWLITGSP-QPLVEAVYFD 131 (210)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhCC---CEEEEEcCCc-HHHHHHHHHh
Confidence 356789999988876554 3478999999996 667678 9999999987 6677766644
No 24
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.42 E-value=2.7e-07 Score=85.22 Aligned_cols=41 Identities=15% Similarity=0.052 Sum_probs=35.4
Q ss_pred cccccHH----HHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCCc
Q 013025 387 SLQDGCT----TFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIHI 431 (451)
Q Consensus 387 ~lr~gf~----efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~~ 431 (451)
.++|||. ++++.++++| ++++|||++. +.+|+.+++..|++
T Consensus 85 ~~~~~~~~~~~e~i~~~~~~~---~~v~IvS~~~-~~~i~~~~~~~~i~ 129 (192)
T PF12710_consen 85 KLFPGFIPDAMELIRELKDNG---IKVVIVSGSP-DEIIEPIAERLGID 129 (192)
T ss_dssp HHCTTCHTTHHHHHHHHHHTT---SEEEEEEEEE-HHHHHHHHHHTTSS
T ss_pred ccCcCchhhHHHHHHHHHHCC---CEEEEECCCc-HHHHHHHHHHcCCC
Confidence 6788888 9999999988 9999999997 89999998655444
No 25
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=98.18 E-value=6.6e-06 Score=78.33 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHhhcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCC
Q 013025 372 KGINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIH 430 (451)
Q Consensus 372 ~Gi~~~~~~~~~~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~ 430 (451)
+|++.+++.+..+.+.++||+.+|++.++++ .++.|||+++ +.+++.++++.|+
T Consensus 53 ~g~~~~~i~~~~~~i~l~pga~ell~~lk~~----~~~~IVS~~~-~~~~~~il~~lgi 106 (203)
T TIGR02137 53 HGLKLGDIQEVIATLKPLEGAVEFVDWLRER----FQVVILSDTF-YEFSQPLMRQLGF 106 (203)
T ss_pred CCCCHHHHHHHHHhCCCCccHHHHHHHHHhC----CeEEEEeCCh-HHHHHHHHHHcCC
Confidence 4999999999999999999999999999874 4999999999 7788988876644
No 26
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.16 E-value=1.3e-05 Score=75.11 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=46.0
Q ss_pred CCCHHHHHHHhhcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCC
Q 013025 373 GINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIH 430 (451)
Q Consensus 373 Gi~~~~~~~~~~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~ 430 (451)
|++.+++....+.+.+.||+.++++.++++ +++.|||.+. +.+++.++.+.|+
T Consensus 54 ~~~~~~i~~~~~~~~~~pg~~e~L~~L~~~----~~~~IvS~~~-~~~~~~~l~~~gl 106 (205)
T PRK13582 54 GLGLADIQEVIATLDPLPGAVEFLDWLRER----FQVVILSDTF-YEFAGPLMRQLGW 106 (205)
T ss_pred CCCHHHHHHHHHhCCCCCCHHHHHHHHHhc----CCEEEEeCCc-HHHHHHHHHHcCC
Confidence 578999999999999999999999999763 6999999999 7788888877653
No 27
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.16 E-value=3.6e-06 Score=80.74 Aligned_cols=61 Identities=20% Similarity=0.201 Sum_probs=52.9
Q ss_pred CcCCCCCHHHHHHHhhc-CcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCCccc
Q 013025 369 GVLKGINLEDIKKAGER-LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIHIQL 433 (451)
Q Consensus 369 ~~F~Gi~~~~~~~~~~~-v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~~~~ 433 (451)
..++|++.+++.+..++ ..++||..++++++++.| ..+.|||++. ..+++.+-+..|+...
T Consensus 58 ~~l~g~~~~~v~~~~~~~~~l~~ga~elv~~lk~~G---~~v~iiSgg~-~~lv~~ia~~lg~d~~ 119 (212)
T COG0560 58 ALLKGLPVEVLEEVREEFLRLTPGAEELVAALKAAG---AKVVIISGGF-TFLVEPIAERLGIDYV 119 (212)
T ss_pred HHhCCCCHHHHHHHHHhcCcCCccHHHHHHHHHHCC---CEEEEEcCCh-HHHHHHHHHHhCCchh
Confidence 45899999999999999 999999999999999999 9999999999 6788877655544433
No 28
>PRK11590 hypothetical protein; Provisional
Probab=97.92 E-value=5.5e-05 Score=72.05 Aligned_cols=55 Identities=7% Similarity=0.047 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHhh--------cCcccccHHHHH-HHHHHcCCCCCcEEEEecccCHHHHHHhhccCC
Q 013025 371 LKGINLEDIKKAGE--------RLSLQDGCTTFF-QKVVKNENLNANVHVLSYCWCGDLIRASFSSGI 429 (451)
Q Consensus 371 F~Gi~~~~~~~~~~--------~v~lr~gf~efl-~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~ 429 (451)
+.|++.+++.+.++ .+.++||..+.+ +.++++| .++.|+|... +.+++.++...|
T Consensus 71 ~~g~~~~~~~~~~~~f~~~~~~~~~~~pga~e~L~~~l~~~G---~~l~IvSas~-~~~~~~il~~l~ 134 (211)
T PRK11590 71 TFGHSEARLQALEADFVRWFRDNVTAFPVVQERLTTYLLSSD---ADVWLITGSP-QPLVEQVYFDTP 134 (211)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhCcCCccHHHHHHHHHHhCC---CEEEEEeCCc-HHHHHHHHHHcc
Confidence 34777776654433 356799999999 4566678 9999999988 778887776544
No 29
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=97.67 E-value=0.00011 Score=68.80 Aligned_cols=107 Identities=13% Similarity=0.113 Sum_probs=79.9
Q ss_pred CCeEEEeccCCccchhhcHHHHHHHHHHhCCCCCCCCcccccccccCCCCCccHhHHHHHHHHHHHHHHHhcCCcchhcc
Q 013025 262 DRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVEN 341 (451)
Q Consensus 262 ~~~~ii~DFDgTIT~~DTi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~Y~~~y~~~~~~~~p~~~~~~ 341 (451)
+.-+++||-|.|+..+--|+.|+.+. .- ...-..++.
T Consensus 15 ~~~aVcFDvDSTvi~eEgIdelA~~~-----G~-----------------~~~Va~~T~--------------------- 51 (227)
T KOG1615|consen 15 SADAVCFDVDSTVIQEEGIDELAAYC-----GV-----------------GEAVAEVTR--------------------- 51 (227)
T ss_pred hcCeEEEecCcchhHHhhHHHHHHHh-----Cc-----------------hHHHHHHHH---------------------
Confidence 34589999999999999999999866 21 111111111
Q ss_pred CCHHHHHHHHHhccHHHHHHHHHHHHhCcCCCCCHHHHHHHhh--cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHH
Q 013025 342 FNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGE--RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGD 419 (451)
Q Consensus 342 ~~~~~e~~~l~~l~~vE~~S~~~v~~s~~F~Gi~~~~~~~~~~--~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~ 419 (451)
..+..|..|+++|+ ++-.+++|... |+.++.. ...+-||-.+++..++++| ..++++|+|+ +.
T Consensus 52 rAMng~~~F~eaL~----------~Rl~llqp~~~-qv~~~v~~~k~~lT~Gi~eLv~~L~~~~---~~v~liSGGF-~~ 116 (227)
T KOG1615|consen 52 RAMNGEADFQEALA----------ARLSLLQPLQV-QVEQFVIKQKPTLTPGIRELVSRLHARG---TQVYLISGGF-RQ 116 (227)
T ss_pred HHhCCCCcHHHHHH----------HHHHHhcccHH-HHHHHHhcCCCccCCCHHHHHHHHHHcC---CeEEEEcCCh-HH
Confidence 23456677888888 45567887664 5555543 7889999999999999999 9999999999 88
Q ss_pred HHHHhhc
Q 013025 420 LIRASFS 426 (451)
Q Consensus 420 fI~~~L~ 426 (451)
+|..+=.
T Consensus 117 ~i~~Va~ 123 (227)
T KOG1615|consen 117 LIEPVAE 123 (227)
T ss_pred HHHHHHH
Confidence 9988743
No 30
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.59 E-value=0.00054 Score=64.92 Aligned_cols=42 Identities=7% Similarity=-0.067 Sum_probs=35.6
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCC
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIH 430 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~ 430 (451)
...+.||..++++.+++.| +++.|+|.++ ...++..+++.|+
T Consensus 91 ~~~~~~g~~~~l~~l~~~g---~~~~i~S~~~-~~~~~~~l~~~~l 132 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAG---YPLAVVTNKP-TPFVAPLLEALGI 132 (226)
T ss_pred cCccCCCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcCC
Confidence 4789999999999999988 9999999998 6677777766543
No 31
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.49 E-value=0.0012 Score=62.11 Aligned_cols=42 Identities=10% Similarity=-0.068 Sum_probs=35.8
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCC
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIH 430 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~ 430 (451)
.+.+.||..++++.++++| +++.|+|.+- ...++..+++.|+
T Consensus 83 ~~~~~~g~~~~L~~l~~~g---~~~~i~S~~~-~~~~~~~l~~~~l 124 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKG---LRLGLVTNKP-TPLARPLLELLGL 124 (213)
T ss_pred cCccCCCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcCc
Confidence 5789999999999999998 9999999875 6677888776654
No 32
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.46 E-value=0.00071 Score=64.07 Aligned_cols=59 Identities=7% Similarity=-0.015 Sum_probs=44.8
Q ss_pred hcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCCcc--------------cchhhHHHHHhhhh
Q 013025 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIHIQ--------------LWKTEVMKHTMTHY 446 (451)
Q Consensus 384 ~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~~~--------------~ck~~v~~~~~~~~ 446 (451)
+.+.+.||..++++.++++| +++.|+|.+. ...++..|+..|+.. -.+++++++.+.|+
T Consensus 79 ~~~~~~~g~~~~l~~L~~~g---~~~~i~S~~~-~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~ 151 (214)
T PRK13288 79 ELVTEYETVYETLKTLKKQG---YKLGIVTTKM-RDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELL 151 (214)
T ss_pred hhcccCcCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHc
Confidence 35678999999999999999 9999999998 667777776654332 23456777777664
No 33
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=97.45 E-value=0.00097 Score=69.37 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=34.6
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCC
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGI 429 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~ 429 (451)
...+.||..+|++.++++| +++.|+|.+- ...++..|++.|
T Consensus 214 ~~~l~pGa~ElL~~Lk~~G---iklaIaSn~~-~~~~~~~L~~lg 254 (381)
T PLN02575 214 IYRLRTGSQEFVNVLMNYK---IPMALVSTRP-RKTLENAIGSIG 254 (381)
T ss_pred CCCcCcCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcC
Confidence 5678999999999999999 9999999776 667777776654
No 34
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.42 E-value=0.0015 Score=65.11 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=45.4
Q ss_pred hcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCCc-----------ccchhhHHHHHhhhh
Q 013025 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIHI-----------QLWKTEVMKHTMTHY 446 (451)
Q Consensus 384 ~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~~-----------~~ck~~v~~~~~~~~ 446 (451)
..+.+.||..++++.++++| +++.|+|.+- +..++..|.+.|+. ..+|.+++.++..++
T Consensus 139 ~~~~l~pg~~e~L~~L~~~g---i~laIvSn~~-~~~~~~~L~~~gl~~~F~~vi~~~~~~~k~~~~~~~l~~~ 208 (273)
T PRK13225 139 PALQLFPGVADLLAQLRSRS---LCLGILSSNS-RQNIEAFLQRQGLRSLFSVVQAGTPILSKRRALSQLVARE 208 (273)
T ss_pred ccCCcCCCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcCChhheEEEEecCCCCCCHHHHHHHHHHh
Confidence 35688999999999999999 9999999997 77888888776542 234666666655443
No 35
>CHL00168 pbsA heme oxygenase; Provisional
Probab=97.41 E-value=0.045 Score=53.51 Aligned_cols=192 Identities=17% Similarity=0.171 Sum_probs=113.2
Q ss_pred chHHHHHHHHcHHHHHHhhcCHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhcC---C-CHHHHHHHHHHHH
Q 013025 14 EGLARRLWIKFKRESVFAMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECA---D-DDDAKLSISELRK 89 (451)
Q Consensus 14 ~~~~~~Lw~~~~~~~~~~~~HPFv~~La~GtL~~~~F~~YL~QD~~YL~~y~r~~a~~~aka---~-~~~~~~~l~~~~~ 89 (451)
.+|+..|-......=..+-+.+|++.+..|.++.+.+..+|.|=|..-...-.+........ + ..++..+..
T Consensus 3 ~~ls~~Lr~~T~~~H~~aE~~~f~k~ll~g~~~~~~Y~~ll~~ly~vY~aLE~~l~~~~~~~~~~~~~~peL~R~~---- 78 (238)
T CHL00168 3 TNLATQLREGTTKSHSMAENVSFVKSFLGGVIDKKSYRKLVANLYFVYSAIEEEIEKNKEHPLIKPIYFQELNRKE---- 78 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccchhhhhhH----
Confidence 36888887766544445568899999999999999999999998877666555554433110 0 011111111
Q ss_pred HHHHHHHHHHHHHHHcCCCchhccCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhhhhhHHHHHHHHHH-HHHHH-
Q 013025 90 GVLEELKMHDSFVKEWGTDLAKMATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVAAYTLGAMSP-CMRLY- 167 (451)
Q Consensus 90 ~i~~E~~~h~~~~~~~gi~~~~~~~~~pat~aYt~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~P-C~~~Y- 167 (451)
.+.. ++.--+|-+..+..+++|++..|++++..++.+++ .++.+ |+-.|
T Consensus 79 aLe~------DL~~l~G~~w~~~~~p~pa~~~Yv~rI~~~~~~~P-----------------------~~LvAH~YvrYL 129 (238)
T CHL00168 79 SLEK------DLNYYYGDDWKSIIEPSPATKIYVDRIHKISAKKP-----------------------ELLIAHAYTRYL 129 (238)
T ss_pred HHHH------HHHHHcCCCccccCCCChHHHHHHHHHHHHhhcCh-----------------------HHHHHHHHHHHH
Confidence 1112 22222454444557889999999999999997543 24445 66677
Q ss_pred H------HHHHHHHhhccCCCCCccchhhhhhcCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhc
Q 013025 168 A------FLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEVEFFC 241 (451)
Q Consensus 168 ~------~ig~~l~~~~~~~~~~~~Y~~WI~~Yss~~f~~~v~~l~~~ld~~~~~~~~~~~~~l~~iF~~a~~lE~~Fwd 241 (451)
+ .|.+.+.+..+. ++..=..+.+++.-++-..+-..+.+.+|++ ..++++++++.+-=..+-.+-...+.
T Consensus 130 GdlsGGQiI~k~l~r~~gl--~~~~G~~Fy~F~~i~~~~~fk~~yr~~Ld~l--~l~e~e~~~iI~EA~~AF~lN~~vf~ 205 (238)
T CHL00168 130 GDLSGGQILKKIAQRAMNL--SDSGGLAFYDFDNIEDDQEFKQIYKAALDNL--PLSDDQIQNIIAEANIAFNLNMKMFQ 205 (238)
T ss_pred HhccccHHHHHHHHHHhCC--CCCcCccccCCCCcCcHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 233333332221 1111112222333234567778888899876 36777777766655555555555544
Q ss_pred c
Q 013025 242 A 242 (451)
Q Consensus 242 ~ 242 (451)
+
T Consensus 206 e 206 (238)
T CHL00168 206 E 206 (238)
T ss_pred H
Confidence 3
No 36
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.27 E-value=0.0013 Score=62.24 Aligned_cols=40 Identities=5% Similarity=-0.023 Sum_probs=32.6
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccC
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSG 428 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~ 428 (451)
.+.+.||..++++.++++| +++.|||.+. ...++..|.+.
T Consensus 92 ~~~~~~g~~~~L~~L~~~g---~~~~i~Tn~~-~~~~~~~l~~~ 131 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESG---YRLGIITDGL-PVKQWEKLERL 131 (221)
T ss_pred hCCCCCCHHHHHHHHHHCC---CEEEEEeCCc-hHHHHHHHHhC
Confidence 5789999999999999998 9999999987 44455555544
No 37
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.18 E-value=0.0086 Score=55.84 Aligned_cols=48 Identities=10% Similarity=0.052 Sum_probs=37.8
Q ss_pred HHHHhhcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCC
Q 013025 379 IKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIH 430 (451)
Q Consensus 379 ~~~~~~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~ 430 (451)
+.+....+.+.||..++++.++++| +++.|+|.+. ...++..+++.|+
T Consensus 84 ~~~~~~~~~~~~~~~~~L~~L~~~g---~~~~i~Sn~~-~~~~~~~l~~~gl 131 (198)
T TIGR01428 84 LAEAYLRLPPHPDVPAGLRALKERG---YRLAILSNGS-PAMLKSLVKHAGL 131 (198)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHCCC
Confidence 3333446788999999999999999 9999999877 5667777766544
No 38
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.16 E-value=0.00059 Score=57.91 Aligned_cols=43 Identities=9% Similarity=-0.002 Sum_probs=37.6
Q ss_pred hhcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCC
Q 013025 383 GERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGI 429 (451)
Q Consensus 383 ~~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~ 429 (451)
.....+++|..++++.++++| .+++|+|.++ ..+++..++..+
T Consensus 20 ~~~~~~~~~~~~~l~~l~~~g---~~i~ivS~~~-~~~~~~~~~~~~ 62 (139)
T cd01427 20 IEELELYPGVKEALKELKEKG---IKLALATNKS-RREVLELLEELG 62 (139)
T ss_pred cccCCcCcCHHHHHHHHHHCC---CeEEEEeCch-HHHHHHHHHHcC
Confidence 567899999999999999998 9999999998 778888886654
No 39
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=97.15 E-value=0.00098 Score=65.17 Aligned_cols=100 Identities=22% Similarity=0.419 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhcCCcchhccCCHHHHHHHHHhccHHHHHHHHHHHHhCcCCCCCHHHHHHHhh--cCcccccHHHH
Q 013025 318 LSKQYTEEYEQCIESFMPSEKVENFNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGE--RLSLQDGCTTF 395 (451)
Q Consensus 318 ~~~~Y~~~y~~~~~~~~p~~~~~~~~~~~e~~~l~~l~~vE~~S~~~v~~s~~F~Gi~~~~~~~~~~--~v~lr~gf~ef 395 (451)
+.+.|.+..++..+.|.|.+.+...+.++=..+...-= .++-+-+.+. |++++++.+.++ .+.||+|+.+|
T Consensus 26 ~~~~~~~k~~~L~~kY~PIE~dp~~s~eEK~p~M~EWw---~kah~llv~~----~l~k~~i~~~V~~s~i~LRdg~~~~ 98 (246)
T PF05822_consen 26 LPEEYRKKLKELFEKYYPIEIDPTMSIEEKIPHMEEWW---TKAHELLVEQ----GLTKSEIEEAVKESDIMLRDGVEEF 98 (246)
T ss_dssp S-HHHHHHHHHHHHHHHHHHT-SSS-HHHHHHHHHHHH---HHHHHHHHHH----T-BGGGHHHHHHCS---B-BTHHHH
T ss_pred CCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHH---HHHHHHHHhc----CcCHHHHHHHHHhcchhhhcCHHHH
Confidence 45566777777777777755333233333333332211 1222222332 467788888887 78999999999
Q ss_pred HHHHHHcCCCCCcEEEEecccCHHHHHHhhccC
Q 013025 396 FQKVVKNENLNANVHVLSYCWCGDLIRASFSSG 428 (451)
Q Consensus 396 l~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~ 428 (451)
++.|.+++ +|+.|.|+|. ...|+.+|++.
T Consensus 99 f~~L~~~~---IP~lIFSAGl-gdvI~~vL~q~ 127 (246)
T PF05822_consen 99 FDKLEEHN---IPLLIFSAGL-GDVIEEVLRQA 127 (246)
T ss_dssp HHHHHCTT-----EEEEEEEE-HHHHHHHHHHT
T ss_pred HHHHHhcC---CCEEEEeCCc-HHHHHHHHHHc
Confidence 99999988 9999999999 88999999776
No 40
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.12 E-value=0.0042 Score=58.83 Aligned_cols=42 Identities=10% Similarity=-0.061 Sum_probs=35.0
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCC
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIH 430 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~ 430 (451)
...+.||..++++.++++| +++.|||.+. ...++..|++.|+
T Consensus 85 ~~~l~~G~~~~L~~L~~~g---~~~~ivT~~~-~~~~~~~l~~~~l 126 (220)
T TIGR03351 85 PPVALPGAEEAFRSLRSSG---IKVALTTGFD-RDTAERLLEKLGW 126 (220)
T ss_pred CCccCCCHHHHHHHHHHCC---CEEEEEeCCc-hHHHHHHHHHhhh
Confidence 4689999999999999999 9999999777 6677777765543
No 41
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=97.12 E-value=0.0066 Score=58.40 Aligned_cols=40 Identities=15% Similarity=0.062 Sum_probs=32.5
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccC
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSG 428 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~ 428 (451)
.+.+.||..++++.++++| +++.|+|.+= ...++..+.+.
T Consensus 93 ~~~~~pg~~~~L~~L~~~g---~~l~i~Tn~~-~~~~~~~l~~~ 132 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAG---CVWGIVTNKP-EYLARLILPQL 132 (229)
T ss_pred cCeeCCCHHHHHHHHHHCC---CeEEEECCCC-HHHHHHHHHHc
Confidence 5789999999999999999 9999999764 55666666544
No 42
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=97.10 E-value=0.0068 Score=55.49 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=31.9
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCC
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGI 429 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~ 429 (451)
.+.+.||..++++.+++.| +++.|+|.+ ..++.+|++.|
T Consensus 86 ~~~~~~g~~~~l~~l~~~g---~~i~i~S~~---~~~~~~l~~~~ 124 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKG---IAVGLGSSS---KNADRILAKLG 124 (185)
T ss_pred CCCCCcCHHHHHHHHHHcC---CeEEEEeCc---hhHHHHHHHcC
Confidence 4789999999999999988 999999987 34566665543
No 43
>PRK11587 putative phosphatase; Provisional
Probab=97.07 E-value=0.0021 Score=61.14 Aligned_cols=42 Identities=10% Similarity=0.068 Sum_probs=33.4
Q ss_pred hcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCC
Q 013025 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGI 429 (451)
Q Consensus 384 ~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~ 429 (451)
..+.+.||..++++.++++| +++.|||.+-. ...+..+...+
T Consensus 80 ~~~~~~pg~~e~L~~L~~~g---~~~~ivTn~~~-~~~~~~l~~~~ 121 (218)
T PRK11587 80 EGITALPGAIALLNHLNKLG---IPWAIVTSGSV-PVASARHKAAG 121 (218)
T ss_pred cCceeCcCHHHHHHHHHHcC---CcEEEEcCCCc-hHHHHHHHhcC
Confidence 46789999999999999999 99999998864 34455555443
No 44
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.0025 Score=62.13 Aligned_cols=137 Identities=18% Similarity=0.242 Sum_probs=85.7
Q ss_pred CCCeEEEeccCCccchhhcHHHHHHHHHHhCCCCCCCCcccccccccCCC-CCccHhHHHHHHHHHHHHHHHhcCCcchh
Q 013025 261 GDRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGE-LRNTWGLLSKQYTEEYEQCIESFMPSEKV 339 (451)
Q Consensus 261 ~~~~~ii~DFDgTIT~~DTi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~Y~~~y~~~~~~~~p~~~~ 339 (451)
+.+..+|+|||=|+|..=| .-- +.-++. .. +...-..+...|-+...+...+|-|.+-+
T Consensus 36 a~~~~vIsdfd~TLSrfa~---------~~G-~r~pS~----------~~Vfd~~~~~~~~e~~~k~~~LyhkY~PIEid 95 (298)
T KOG3128|consen 36 AGKLQVISDFDYTLSRFAT---------EQG-KRCPSC----------FGVFDDNVKRLKPECRAKFVALYHKYYPIEID 95 (298)
T ss_pred ccceeEeecCchhHHHHHH---------hhc-CcCCcc----------ccchhhhhhcCCHHHHHHHHHHHhhccCcccC
Confidence 6788999999999996422 100 000000 00 00011223344556666677788887655
Q ss_pred ccCCHHHHHHHHHhccHHHHHHHHHHHHhCcCCCCCHHHHHHHhh--cCcccccHHHHHHHHHHcCCCCCcEEEEecccC
Q 013025 340 ENFNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGE--RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWC 417 (451)
Q Consensus 340 ~~~~~~~e~~~l~~l~~vE~~S~~~v~~s~~F~Gi~~~~~~~~~~--~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws 417 (451)
.+.++++-..|...-= -+|= ..=+=.|+++.++++.+. ++.+|.|+.+|+..+.+++ ||+.|-|+|.
T Consensus 96 P~ltieEKvp~MeeWW---~kSH----~Lliq~~f~k~~I~~~Va~s~i~lReg~~~ff~~L~~~~---IP~~iFSAGi- 164 (298)
T KOG3128|consen 96 PVLTIEEKVPHMEEWW---TKSH----ELLIQGGFSKNAIDDIVAESNIALREGYEEFFEALQAHE---IPLLIFSAGI- 164 (298)
T ss_pred CCCChhhhchHHHHHH---hccc----ceeecCCcCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC---CceEEEecch-
Confidence 5455555444443311 0000 011224678999999888 7899999999999999999 9999999998
Q ss_pred HHHHHHhhccC
Q 013025 418 GDLIRASFSSG 428 (451)
Q Consensus 418 ~~fI~~~L~~~ 428 (451)
...|+.++++.
T Consensus 165 gdiiEev~~q~ 175 (298)
T KOG3128|consen 165 GDIIEEVTRQK 175 (298)
T ss_pred HHHHHHHHHHH
Confidence 77888887543
No 45
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.02 E-value=0.0079 Score=57.26 Aligned_cols=45 Identities=11% Similarity=-0.035 Sum_probs=36.5
Q ss_pred hcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCCcc
Q 013025 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIHIQ 432 (451)
Q Consensus 384 ~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~~~ 432 (451)
....+.||-.++++.++++| +++.|+|.+- ...++.+++..++.+
T Consensus 89 ~~~~~~~g~~~~l~~l~~~g---~~~~i~S~~~-~~~~~~~l~~~~l~~ 133 (222)
T PRK10826 89 ETRPLLPGVREALALCKAQG---LKIGLASASP-LHMLEAVLTMFDLRD 133 (222)
T ss_pred cCCCCCCCHHHHHHHHHHCC---CeEEEEeCCc-HHHHHHHHHhCcchh
Confidence 35788999999999999999 9999999876 667777776665433
No 46
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=96.98 E-value=0.0061 Score=60.25 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=32.4
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccC
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSG 428 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~ 428 (451)
.+.+.||..++++.++++| +++.|+|.+= ...++..|.+.
T Consensus 107 ~~~l~pg~~e~L~~L~~~g---~~l~I~Tn~~-~~~~~~~l~~~ 146 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHE---IPIAVASTRP-RRYLERAIEAV 146 (260)
T ss_pred CcccCCCHHHHHHHHHHCC---CEEEEEeCcC-HHHHHHHHHHc
Confidence 4678999999999999999 9999999863 55566666554
No 47
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=96.89 E-value=0.005 Score=57.84 Aligned_cols=43 Identities=7% Similarity=0.038 Sum_probs=35.2
Q ss_pred hcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCC
Q 013025 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIH 430 (451)
Q Consensus 384 ~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~ 430 (451)
..+.+.||..++++.++++| +++.|+|.+- ...++..+.+.|+
T Consensus 72 ~~~~~~~g~~~~L~~L~~~g---~~~~i~Sn~~-~~~~~~~l~~~~l 114 (205)
T TIGR01454 72 GEVEVFPGVPELLAELRADG---VGTAIATGKS-GPRARSLLEALGL 114 (205)
T ss_pred cccccCCCHHHHHHHHHHCC---CeEEEEeCCc-hHHHHHHHHHcCC
Confidence 46789999999999999999 9999999876 5566776665533
No 48
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=96.81 E-value=0.0024 Score=57.01 Aligned_cols=38 Identities=5% Similarity=0.071 Sum_probs=29.6
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhc
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFS 426 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~ 426 (451)
.....+|..++++.++++| +++.|+|.++ ...+...++
T Consensus 62 ~~~~~~g~~e~l~~L~~~g---~~~~i~T~~~-~~~~~~~~~ 99 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAG---IKLGIISNGS-LRAQKLLLR 99 (154)
T ss_pred hheeccCHHHHHHHHHHCc---CeEEEEeCCc-hHHHHHHHH
Confidence 4455699999999999988 9999999887 444444443
No 49
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=96.76 E-value=0.0072 Score=58.97 Aligned_cols=41 Identities=7% Similarity=-0.100 Sum_probs=35.5
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCC
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGI 429 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~ 429 (451)
.+.+-||..++++.++++| +++.|+|.+. ...++..|.+.|
T Consensus 106 ~~~l~pgv~e~L~~L~~~g---~~l~I~Tn~~-~~~~~~~l~~~g 146 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRG---LKRAAVTNAP-RENAELMISLLG 146 (248)
T ss_pred cCCcCccHHHHHHHHHHcC---CeEEEEeCCC-HHHHHHHHHHcC
Confidence 5788999999999999999 9999999987 667787776654
No 50
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=96.76 E-value=0.017 Score=57.24 Aligned_cols=40 Identities=5% Similarity=0.017 Sum_probs=32.5
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccC
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSG 428 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~ 428 (451)
...+.||..++++.++++| +++.|+|.+= ...++.++.+.
T Consensus 99 ~~~~~~g~~e~L~~Lk~~g---~~l~ivTn~~-~~~~~~~l~~~ 138 (272)
T PRK13223 99 LTVVYPGVRDTLKWLKKQG---VEMALITNKP-ERFVAPLLDQM 138 (272)
T ss_pred CCccCCCHHHHHHHHHHCC---CeEEEEECCc-HHHHHHHHHHc
Confidence 4678999999999999988 9999999764 55666666544
No 51
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=96.71 E-value=0.02 Score=55.02 Aligned_cols=46 Identities=11% Similarity=-0.050 Sum_probs=38.3
Q ss_pred HHhhcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCC
Q 013025 381 KAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIH 430 (451)
Q Consensus 381 ~~~~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~ 430 (451)
.....+.+.||..+|+..++.+| +++.|.|.+- +..++.+|...|+
T Consensus 80 ~~~~~~~~~pGv~~~l~~L~~~~---i~~avaS~s~-~~~~~~~L~~~gl 125 (221)
T COG0637 80 LELEGLKPIPGVVELLEQLKARG---IPLAVASSSP-RRAAERVLARLGL 125 (221)
T ss_pred hhhcCCCCCccHHHHHHHHHhcC---CcEEEecCCh-HHHHHHHHHHccC
Confidence 34457899999999999999998 9999999987 6677888866653
No 52
>cd00232 HemeO Heme oxygenase catalyzes the rate limiting step in the degradation of heme to bilirubin, it is essential for recycling of iron from heme. Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This family includes bacterial HO, as well as the mammalian isoforms HO-1, and HO-2. Heme oxygenases play key roles in heme homeostasis, oxidative stress response, photosynthetic pigment formation in cyanobacteria, cellular signaling in mammals, and iron acquisition from host heme by bacterial pathogens.
Probab=96.62 E-value=0.4 Score=45.10 Aligned_cols=183 Identities=16% Similarity=0.051 Sum_probs=106.2
Q ss_pred HHHHHHHHcHHHHHHhhcCHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHH
Q 013025 16 LARRLWIKFKRESVFAMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECAD----DDDAKLSISELRKGV 91 (451)
Q Consensus 16 ~~~~Lw~~~~~~~~~~~~HPFv~~La~GtL~~~~F~~YL~QD~~YL~~y~r~~a~~~aka~----~~~~~~~l~~~~~~i 91 (451)
|+.+|-......=.+.=+|||++.|..|+++.+.+..||.+-|.+....-+.+........ ..+...... .+
T Consensus 2 ~~~~Lr~~T~~~H~~~e~~~~~~~l~~~~~s~~~Y~~~L~~~~~~~~~lE~~l~~~~~~~~~~~~~~~~~~r~~----~L 77 (203)
T cd00232 2 LSEELRAATRQLHEEAENLVFMKDLLKGFLSREGYARFLANLYLVYRALEALLEASKDNPYLAPLYLPELERAA----AL 77 (203)
T ss_pred HHHHHHHHHHHHHHHHHchHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccCccccchH----HH
Confidence 5566655543333334579999999999999999999999999999998888876643221 111111111 11
Q ss_pred HHHHHHHHHHHHHcCCCchh-ccCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHH---
Q 013025 92 LEELKMHDSFVKEWGTDLAK-MATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCMRLY--- 167 (451)
Q Consensus 92 ~~E~~~h~~~~~~~gi~~~~-~~~~~pat~aYt~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~PC~~~Y--- 167 (451)
... ++.+|.+... ...+.|++ .|.+++...+.++. +.++++++.-+-+=
T Consensus 78 ~~D-------L~~lg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------------------~~~lg~~YV~egs~l~G 130 (203)
T cd00232 78 EKD-------LAYLGGSDWRVREPPLPAA-AYAARLREIAEENP-------------------ALLLGHAYVRYGADLSG 130 (203)
T ss_pred HHH-------HHHHhCCCccccCCCChHH-HHHHHHHHHHhcCH-------------------HHHHHHHHHHHHHHhcc
Confidence 111 2345555432 33456677 99998888775443 45566666544211
Q ss_pred -HHHHHHHHhhccCCCCCccchhhhhhcCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 013025 168 -AFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMK 234 (451)
Q Consensus 168 -~~ig~~l~~~~~~~~~~~~Y~~WI~~Yss~~f~~~v~~l~~~ld~~~~~~~~~~~~~l~~iF~~a~~ 234 (451)
..|.+.+.+..+. + ..=..+...|..++-...-..+...+|++. .++++.+++.+.-+.+-.
T Consensus 131 G~~i~~~l~~~~~~--~-~~~~~f~~~~g~~~~~~~w~~f~~~l~~~~--~~~~~~~~~i~~A~~~F~ 193 (203)
T cd00232 131 GQVLAKIAQRALLL--E-GKGLAFYAFHGIADRGLFKREFREALDALP--LDEEERQRVVAEARAAFR 193 (203)
T ss_pred cHHHHHHHHHHhCC--C-CccCccccCCCcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHH
Confidence 2233333333221 1 112335556654556677777888888863 566666665544444433
No 53
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=96.61 E-value=0.015 Score=56.56 Aligned_cols=41 Identities=7% Similarity=-0.013 Sum_probs=33.7
Q ss_pred hcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccC
Q 013025 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSG 428 (451)
Q Consensus 384 ~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~ 428 (451)
+.+.+.||..++++.++++| +++.|+|.+- ...++.+|++.
T Consensus 96 ~~~~~~pg~~e~L~~L~~~g---~~l~IvT~~~-~~~~~~~l~~~ 136 (253)
T TIGR01422 96 EYSSPIPGVIEVIAYLRARG---IKIGSTTGYT-REMMDVVAPEA 136 (253)
T ss_pred hcCccCCCHHHHHHHHHHCC---CeEEEECCCc-HHHHHHHHHHH
Confidence 35789999999999999999 9999999876 66777666443
No 54
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=96.56 E-value=0.031 Score=52.23 Aligned_cols=40 Identities=8% Similarity=0.060 Sum_probs=30.2
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCC
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGI 429 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~ 429 (451)
...+-||-.++++.++++| +++.|+|. -+. .++..|++.|
T Consensus 103 ~~~~~~g~~~~l~~L~~~g---~~~~i~Sn-~~~-~~~~~l~~~~ 142 (203)
T TIGR02252 103 PWQVYPDAIKLLKDLRERG---LILGVISN-FDS-RLRGLLEALG 142 (203)
T ss_pred cceeCcCHHHHHHHHHHCC---CEEEEEeC-Cch-hHHHHHHHCC
Confidence 3467899999999999988 99999994 333 3455665543
No 55
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=96.50 E-value=0.0044 Score=55.19 Aligned_cols=42 Identities=10% Similarity=0.114 Sum_probs=36.5
Q ss_pred hcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCC
Q 013025 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGI 429 (451)
Q Consensus 384 ~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~ 429 (451)
....+.||..++++.++++| ++++|+|.+ +...++..+.+.|
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~---~~~~i~Sn~-~~~~~~~~l~~~~ 115 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKG---IPLVIVSNG-SRERIERVLERLG 115 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTT---SEEEEEESS-EHHHHHHHHHHTT
T ss_pred hccchhhhhhhhhhhccccc---ceeEEeecC-Ccccccccccccc
Confidence 57899999999999999888 999999987 5788888887664
No 56
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=96.47 E-value=0.014 Score=57.32 Aligned_cols=38 Identities=3% Similarity=-0.020 Sum_probs=31.9
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhc
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFS 426 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~ 426 (451)
.+.+-||..++++.++++| +++.|+|.+. +..++.+|+
T Consensus 99 ~~~~~pg~~elL~~L~~~g---~~l~I~T~~~-~~~~~~~l~ 136 (267)
T PRK13478 99 YATPIPGVLEVIAALRARG---IKIGSTTGYT-REMMDVVVP 136 (267)
T ss_pred cCCCCCCHHHHHHHHHHCC---CEEEEEcCCc-HHHHHHHHH
Confidence 5788999999999999999 9999999777 556666654
No 57
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=96.46 E-value=0.012 Score=62.71 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=42.4
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCCc-------------ccchhhHHHHHhhh
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIHI-------------QLWKTEVMKHTMTH 445 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~~-------------~~ck~~v~~~~~~~ 445 (451)
.+.+.||..+++++++++| +++.|+|.+= ...++..+++.|+. +-.|+++..+.+.+
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g---~~l~IvS~~~-~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~ 397 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENN---CSIYIASNGL-TEYLRAIVSYYDLDQWVTETFSIEQINSLNKSDLVKSILNK 397 (459)
T ss_pred CCCcCCCHHHHHHHHHHCC---CeEEEEeCCc-hHHHHHHHHHCCcHhhcceeEecCCCCCCCCcHHHHHHHHh
Confidence 4688999999999999988 9999999875 66777777655332 12567766665544
No 58
>PRK09449 dUMP phosphatase; Provisional
Probab=96.46 E-value=0.029 Score=53.25 Aligned_cols=40 Identities=5% Similarity=0.135 Sum_probs=32.6
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCC
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGI 429 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~ 429 (451)
.+.+.||..++++.++ ++ +++.|+|.++ ...++..|.+.|
T Consensus 93 ~~~~~~g~~~~L~~L~-~~---~~~~i~Tn~~-~~~~~~~l~~~~ 132 (224)
T PRK09449 93 ICTPLPGAVELLNALR-GK---VKMGIITNGF-TELQQVRLERTG 132 (224)
T ss_pred cCccCccHHHHHHHHH-hC---CeEEEEeCCc-HHHHHHHHHhCC
Confidence 5779999999999998 57 8999999988 556676666553
No 59
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=96.39 E-value=0.041 Score=52.88 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=35.1
Q ss_pred HhhcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccC
Q 013025 382 AGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSG 428 (451)
Q Consensus 382 ~~~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~ 428 (451)
....+.+.||..++++.++++| +++.|+|.+= +..++..|.+.
T Consensus 88 ~~~~~~~~~g~~e~L~~Lk~~g---~~~~i~Tn~~-~~~~~~~l~~~ 130 (224)
T PRK14988 88 QGPRAVLREDTVPFLEALKASG---KRRILLTNAH-PHNLAVKLEHT 130 (224)
T ss_pred HhccCCcCCCHHHHHHHHHhCC---CeEEEEeCcC-HHHHHHHHHHC
Confidence 4467899999999999999999 9999999863 55666666554
No 60
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=96.25 E-value=0.032 Score=51.00 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=26.0
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccC
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWC 417 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws 417 (451)
...+.||-.++|+.++++| +++.|+|.++.
T Consensus 85 ~~~~~pg~~~~L~~L~~~g---~~~~i~s~~~~ 114 (185)
T TIGR01990 85 PADVLPGIKNLLDDLKKNN---IKIALASASKN 114 (185)
T ss_pred CcccCccHHHHHHHHHHCC---CeEEEEeCCcc
Confidence 3578899999999999998 99999997653
No 61
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=95.77 E-value=0.033 Score=60.13 Aligned_cols=47 Identities=9% Similarity=0.110 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHhh-------cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhh
Q 013025 371 LKGINLEDIKKAGE-------RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASF 425 (451)
Q Consensus 371 F~Gi~~~~~~~~~~-------~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L 425 (451)
|+|++.+++.+.++ .-.+++.-.+.+ ++.| ...|||+.. +.+++...
T Consensus 87 f~G~~~~el~~~~r~~l~~f~~~~l~~~a~~~~---~~~g----~~vvVSASp-~~~Vepfa 140 (497)
T PLN02177 87 FAGLKIRDIELVSRSVLPKFYAEDVHPETWRVF---NSFG----KRYIITASP-RIMVEPFV 140 (497)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHH---HhCC----CEEEEECCc-HHHHHHHH
Confidence 99999999988874 123666644433 3445 349999855 44444444
No 62
>PLN02940 riboflavin kinase
Probab=95.61 E-value=0.027 Score=58.81 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=33.2
Q ss_pred hcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhc
Q 013025 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFS 426 (451)
Q Consensus 384 ~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~ 426 (451)
+++.+.||..++++.++++| +++.|+|.+. ...++..|.
T Consensus 90 ~~~~l~pGv~elL~~Lk~~g---~~l~IvTn~~-~~~~~~~l~ 128 (382)
T PLN02940 90 CNIKALPGANRLIKHLKSHG---VPMALASNSP-RANIEAKIS 128 (382)
T ss_pred ccCCCCcCHHHHHHHHHHCC---CcEEEEeCCc-HHHHHHHHH
Confidence 46788999999999999999 9999999987 556666665
No 63
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=95.50 E-value=0.089 Score=49.12 Aligned_cols=39 Identities=3% Similarity=-0.162 Sum_probs=31.6
Q ss_pred ccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCC
Q 013025 388 LQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIH 430 (451)
Q Consensus 388 lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~ 430 (451)
..++-.++++.++++| +++.|+|.+. ...++..|+..|+
T Consensus 107 ~~~~~~~~L~~l~~~g---~~~~i~T~~~-~~~~~~~l~~~gl 145 (197)
T TIGR01548 107 TLLTPKGLLRELHRAP---KGMAVVTGRP-RKDAAKFLTTHGL 145 (197)
T ss_pred cccCHHHHHHHHHHcC---CcEEEECCCC-HHHHHHHHHHcCc
Confidence 4445599999999888 9999999887 7788888876654
No 64
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=95.45 E-value=0.13 Score=47.29 Aligned_cols=39 Identities=5% Similarity=-0.036 Sum_probs=29.9
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCC
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIH 430 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~ 430 (451)
.+.+.+|-.++++.++ .++.|+|.+. ...+...|.+.|+
T Consensus 82 ~~~~~~g~~~~L~~L~------~~~~i~Tn~~-~~~~~~~l~~~gl 120 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP------GRKIIFTNGD-RAHARRALNRLGI 120 (184)
T ss_pred hCCCCHHHHHHHHhCC------CCEEEEeCCC-HHHHHHHHHHcCc
Confidence 4567889999998885 3789999888 6677777776644
No 65
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.23 E-value=0.14 Score=60.31 Aligned_cols=40 Identities=13% Similarity=-0.020 Sum_probs=33.7
Q ss_pred cccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCC
Q 013025 387 SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIH 430 (451)
Q Consensus 387 ~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~ 430 (451)
.+-||..++++.++++| +++.|+|.+. ...++..|++.|+
T Consensus 161 ~~~pG~~elL~~Lk~~G---~~l~IvSn~~-~~~~~~~L~~~gl 200 (1057)
T PLN02919 161 IGFPGALELITQCKNKG---LKVAVASSAD-RIKVDANLAAAGL 200 (1057)
T ss_pred ccCccHHHHHHHHHhCC---CeEEEEeCCc-HHHHHHHHHHcCC
Confidence 46899999999999999 9999999877 6677777766654
No 66
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=95.17 E-value=0.15 Score=47.89 Aligned_cols=30 Identities=3% Similarity=0.029 Sum_probs=27.1
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccC
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWC 417 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws 417 (451)
.+.+.||..++++.++++| +++.|+|.++.
T Consensus 92 ~~~~~~~~~~~L~~L~~~g---~~l~i~Sn~~~ 121 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKG---FKTACITNNFP 121 (211)
T ss_pred ccccChhHHHHHHHHHHCC---CeEEEEeCCCC
Confidence 5789999999999999988 99999998764
No 67
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=95.12 E-value=0.27 Score=45.99 Aligned_cols=28 Identities=21% Similarity=0.238 Sum_probs=25.5
Q ss_pred CcccccHHHHHHHHHHcCCCCCcEEEEeccc
Q 013025 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCW 416 (451)
Q Consensus 386 v~lr~gf~efl~~~~~~~~~~~~~~IvS~nw 416 (451)
..+.||..++++.++++| ++++|+|.+-
T Consensus 83 ~~~~~g~~e~L~~l~~~g---~~~~i~Sn~~ 110 (199)
T PRK09456 83 VALRPEVIAIMHKLREQG---HRVVVLSNTN 110 (199)
T ss_pred hccCHHHHHHHHHHHhCC---CcEEEEcCCc
Confidence 468999999999999999 9999999875
No 68
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=95.02 E-value=0.4 Score=45.02 Aligned_cols=39 Identities=5% Similarity=0.078 Sum_probs=32.0
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccC
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSG 428 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~ 428 (451)
.+.+.||..++++.++++ +++.|+|.++ ...++..|++.
T Consensus 95 ~~~~~~g~~~~L~~l~~~----~~~~i~Sn~~-~~~~~~~l~~~ 133 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQK----FRLYIVTNGV-RETQYKRLRKS 133 (224)
T ss_pred cCeeCccHHHHHHHHHhc----CcEEEEeCCc-hHHHHHHHHHC
Confidence 478999999999999763 6999999988 56667777655
No 69
>PRK08238 hypothetical protein; Validated
Probab=94.85 E-value=0.14 Score=55.15 Aligned_cols=42 Identities=7% Similarity=-0.030 Sum_probs=36.1
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCC
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIH 430 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~ 430 (451)
..+++||..++++.++++| +++.|+|..- +..++.++++.|+
T Consensus 70 ~lp~~pga~e~L~~lk~~G---~~v~LaTas~-~~~a~~i~~~lGl 111 (479)
T PRK08238 70 TLPYNEEVLDYLRAERAAG---RKLVLATASD-ERLAQAVAAHLGL 111 (479)
T ss_pred hCCCChhHHHHHHHHHHCC---CEEEEEeCCC-HHHHHHHHHHcCC
Confidence 4469999999999999999 9999999987 7788888776653
No 70
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=94.76 E-value=0.46 Score=43.56 Aligned_cols=40 Identities=5% Similarity=-0.208 Sum_probs=29.5
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCC
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIH 430 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~ 430 (451)
.+.+-|| .+++..+++ + +++.|+|.++ ...++..|++.|+
T Consensus 86 ~~~~~~~-~e~L~~L~~-~---~~l~I~T~~~-~~~~~~~l~~~~l 125 (188)
T PRK10725 86 SVEPLPL-IEVVKAWHG-R---RPMAVGTGSE-SAIAEALLAHLGL 125 (188)
T ss_pred cCCCccH-HHHHHHHHh-C---CCEEEEcCCc-hHHHHHHHHhCCc
Confidence 4556676 688888764 4 7999999998 6677777776654
No 71
>PF01126 Heme_oxygenase: Heme oxygenase; InterPro: IPR016053 Haem oxygenase (1.14.99.3 from EC) (HO) [] is the microsomal enzyme that, in animals, carries out the oxidation of haem, it cleaves the haem ring at the alpha-methene bridge to form biliverdin and carbon monoxide []. Biliverdin is subsequently converted to bilirubin by biliverdin reductase. In mammals there are three isozymes of haem oxygenase: HO-1 to HO-3. The first two isozymes differ in their tissue expression and their inducibility: HO-1 is highly inducible by its substrate haem and by various non-haem substances, while HO-2 is non-inducible. It has been suggested [] that HO-2 could be implicated in the production of carbon monoxide in the brain where it is said to act as a neurotransmitter. In the genome of the chloroplast of red algae as well as in cyanobacteria, there is a haem oxygenase (gene pbsA) that is the key enzyme in the synthesis of the chromophoric part of the photosynthetic antennae []. A haem oxygenase is also present in the bacteria Corynebacterium diphtheriae (gene hmuO), where it is involved in the acquisition of iron from the host haem []. There is, in the central section of these enzymes, a well-conserved region centred on a histidine residue.; GO: 0004392 heme oxygenase (decyclizing) activity, 0006788 heme oxidation, 0055114 oxidation-reduction process; PDB: 1J77_A 1P3U_A 1P3V_A 1P3T_A 1WNW_B 1WNX_B 1IW1_B 1WNV_C 1V8X_A 1WZG_B ....
Probab=94.73 E-value=2.9 Score=39.30 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=69.7
Q ss_pred chHHHHHHHHcHHHHHHhhcCHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHH
Q 013025 14 EGLARRLWIKFKRESVFAMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECA-----DDDDAKLSISELR 88 (451)
Q Consensus 14 ~~~~~~Lw~~~~~~~~~~~~HPFv~~La~GtL~~~~F~~YL~QD~~YL~~y~r~~a~~~aka-----~~~~~~~~l~~~~ 88 (451)
|+|+.+|-+.....=...=+++|++.+..|.++.+.+..+|.+=|.+....-+.+....... ..+ ......
T Consensus 1 ~~l~~~Lr~~T~~~H~~~e~~~~~~~l~~~~~~~~~Y~~~L~~~~~~y~~lE~~l~~~~~~~~~~~~~~~-~l~R~~--- 76 (205)
T PF01126_consen 1 MSLSQRLREATRDLHERLEKSPFMKDLFAGDLSRDDYARFLQAFYHVYRALEAALDRNRDDPALAPLYFP-ELRRSA--- 76 (205)
T ss_dssp -SHHHHHHHHTHHHHHHHHTSHHHHHHHTTSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTTGGGS-G-HHHTHH---
T ss_pred CcHHHHHHHHHHHHHHHHHcchhHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccCc-chhHHH---
Confidence 57888888877554455568999999999999999999999998888887776666542221 111 111111
Q ss_pred HHHHHHHHHHHHHHHHcCCCchhccCCChHHHHHHHHHHHHhcCC
Q 013025 89 KGVLEELKMHDSFVKEWGTDLAKMATVNSATVKYTEFLLATASGK 133 (451)
Q Consensus 89 ~~i~~E~~~h~~~~~~~gi~~~~~~~~~pat~aYt~~l~~~a~~~ 133 (451)
.+..-+. .-.|-+..+..++.|++.+|..++...+..+
T Consensus 77 -~L~~DL~------~l~~~~~~~~~~~~~a~~~~~~~i~~~~~~~ 114 (205)
T PF01126_consen 77 -ALEADLA------ALGGPDWRDDIEPSPATQAYVPHIRELAESS 114 (205)
T ss_dssp -HHHHHHH------HHHCTTHHHHCHHHHHHHHHHHHHHHHHHHS
T ss_pred -HHHHHHH------HhhCCCcccccCCChhHHHHHHHHHHHHccC
Confidence 1111111 1112122234567899999999998887533
No 72
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=94.64 E-value=0.16 Score=50.82 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=30.8
Q ss_pred CcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhc
Q 013025 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFS 426 (451)
Q Consensus 386 v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~ 426 (451)
+.+.||..++++.++++| +++.|+|.+- ...+..++.
T Consensus 143 ~~l~pGv~elL~~L~~~g---~~l~IvTn~~-~~~~~~~l~ 179 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAG---IKVAVCSTSN-EKAVSKIVN 179 (286)
T ss_pred CCchhhHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHH
Confidence 589999999999999999 9999999654 666666554
No 73
>PF12981 DUF3865: Domain of Unknown Function with PDB structure (DUF3865); InterPro: IPR024477 This entry represents a family of proteins of unknown function. The Nostoc punctiforme protein (D0VWS1 from SWISSPROT) has been structurally characterised and adopts a heme oxygenase-like fold similar to that of the Chlamydia trachomatis death domain-binding CADD protein. The proposed active sites of the Nostoc and Chlamydia sequences are identical, suggesting similar functions.; PDB: 3B5P_A 3B5O_A.
Probab=94.41 E-value=0.46 Score=45.46 Aligned_cols=187 Identities=15% Similarity=0.120 Sum_probs=101.7
Q ss_pred hhcCHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH----------HHHH
Q 013025 31 AMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAKLSISELRKGVLEELK----------MHDS 100 (451)
Q Consensus 31 ~~~HPFv~~La~GtL~~~~F~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~l~~~~~~i~~E~~----------~h~~ 100 (451)
..+.||++.|.+-++..-. .||.|=..|-++-.-.+-.|+-++...-.=....+++.++.+|+. ++.+
T Consensus 21 ~nn~~~~~~i~t~S~~~~~--~vi~~ys~F~~~~~~~l~~A~~~~~~~~~~~V~~El~~Ni~EE~G~~~gk~sHy~~~~~ 98 (231)
T PF12981_consen 21 INNNPFLSHISTASFSQKE--LVIKQYSVFPKYNCGMLQRAAYCIRGFCWPGVAQELQRNINEEMGEGCGKISHYVVFRK 98 (231)
T ss_dssp TTT-CCHHGCCC--HHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTTTTTT--HHHHHHH
T ss_pred hcCCHHHHHhhhhhHHHHH--HHHHHHhHhhHHHHHHHHHHHHHHhhcCCcHHHHHHHHhHHHhcCCCCCCcchHHHHHH
Confidence 3689999988876665444 555555556666666666665544322222245566778988887 5555
Q ss_pred HHHH-cCCCchhccCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHH-------HHHHHHHH
Q 013025 101 FVKE-WGTDLAKMATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCM-------RLYAFLGK 172 (451)
Q Consensus 101 ~~~~-~gi~~~~~~~~~pat~aYt~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~PC~-------~~Y~~ig~ 172 (451)
-+.. +|.+.. ...|+++|.....=+..+..-+. -+.+.|++.-+ .+-.+|..
T Consensus 99 ~l~~~~~~~v~-~~~Ps~aT~~fl~sv~~L~t~~~-------------------s~vlGa~YAtE~~AIpEl~ll~ei~~ 158 (231)
T PF12981_consen 99 ALHTYFGFDVN-NRMPSVATTHFLDSVLALFTWDS-------------------SEVLGACYATEAAAIPELQLLYEIVN 158 (231)
T ss_dssp HHHHHHS---T-T----HHHHHHHHHHHHHCTS-H-------------------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCccc-ccCCcHHHHHHHHHHHHHhCCCH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544 886654 46789999998888887774222 13444544433 23334433
Q ss_pred HHHhhccCCCCCccchhhhhhcCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhcc
Q 013025 173 EFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEVEFFCA 242 (451)
Q Consensus 173 ~l~~~~~~~~~~~~Y~~WI~~Yss~~f~~~v~~l~~~ld~~~~~~~~~~~~~l~~iF~~a~~lE~~Fwd~ 242 (451)
+++...+..-+...- ++.+.+-++-=.+..+.+...++.... +++++...++=|..++..=..||.+
T Consensus 159 ~la~rk~~~~~~s~l-~F~d~HlDg~E~~H~d~L~~~l~~~i~--~e~q~~~f~~Gf~~mI~~m~~wW~~ 225 (231)
T PF12981_consen 159 ELAQRKGLHNSWSQL-DFYDWHLDGTEQEHKDGLRQFLASYID--TEEQMPLFKDGFLAMIDIMEDWWKE 225 (231)
T ss_dssp TT---HHHHH-------HHHHHCS----HHHHHHHHHHHTT----GGG-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCcchhhh-HHHHHhcchHHHHHHHHHHHHHHHHcC--cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 333211000011112 456666666677888899999987753 4446888999999999988888875
No 74
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=94.14 E-value=0.13 Score=50.23 Aligned_cols=42 Identities=0% Similarity=-0.142 Sum_probs=31.9
Q ss_pred cccccHHHHHHHHHHcCCCCCcEEEEeccc---CHHHHHHhhccCCCc
Q 013025 387 SLQDGCTTFFQKVVKNENLNANVHVLSYCW---CGDLIRASFSSGIHI 431 (451)
Q Consensus 387 ~lr~gf~efl~~~~~~~~~~~~~~IvS~nw---s~~fI~~~L~~~~~~ 431 (451)
...++..+|++.+.++| ++++|||... ....++.++++.|++
T Consensus 114 ~p~~~a~elL~~l~~~G---~~i~iVTnr~~~k~~~~a~~ll~~lGi~ 158 (237)
T TIGR01672 114 IPKEVARQLIDMHQRRG---DAIFFVTGRTPGKTDTVSKTLAKNFHIP 158 (237)
T ss_pred cchhHHHHHHHHHHHCC---CEEEEEeCCCCCcCHHHHHHHHHHhCCc
Confidence 44445999999999999 9999999874 245677777665554
No 75
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=94.12 E-value=0.4 Score=43.35 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=27.8
Q ss_pred CcccccHHHHHHHHHHcCCCCCcEEEEecccCHH
Q 013025 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGD 419 (451)
Q Consensus 386 v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~ 419 (451)
+.+.||..++++.+++.| +++.|+|.+....
T Consensus 84 ~~~~~g~~~~l~~l~~~g---~~~~i~Tn~~~~~ 114 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARG---KKLALLTNSPRDH 114 (183)
T ss_pred CccCcCHHHHHHHHHHCC---CeEEEEeCCchHH
Confidence 689999999999999989 9999999988443
No 76
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=94.10 E-value=0.67 Score=43.81 Aligned_cols=39 Identities=13% Similarity=0.102 Sum_probs=30.9
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCC
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIH 430 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~ 430 (451)
.+.+.||..++++.+ + +++.|+|.+- ...++..|++.|+
T Consensus 86 ~~~~~~gv~~~L~~L---~---~~~~ivTn~~-~~~~~~~l~~~~l 124 (221)
T PRK10563 86 ELEPIAGANALLESI---T---VPMCVVSNGP-VSKMQHSLGKTGM 124 (221)
T ss_pred cCCcCCCHHHHHHHc---C---CCEEEEeCCc-HHHHHHHHHhcCh
Confidence 578889999999987 4 8999999764 6777777765543
No 77
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=94.09 E-value=0.14 Score=54.89 Aligned_cols=113 Identities=10% Similarity=0.095 Sum_probs=66.1
Q ss_pred CCeEEEeccCCccch-hhcHHHHHHHHHHhCCCCCCCCcccccccccCCCCCccHhHHHHHHHHHHHHHHHhcCCcchhc
Q 013025 262 DRLIIFSDFDLTCTI-VDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVE 340 (451)
Q Consensus 262 ~~~~ii~DFDgTIT~-~DTi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~Y~~~y~~~~~~~~p~~~~~ 340 (451)
.+-.+++|||||||. +|+....+..|.-.. + .+..+ .+-...|...
T Consensus 7 ~~~~~~fD~DGTLlrs~ssFpyFmlva~eag--G---------------------------~~R~~--~LL~l~P~l~-- 53 (498)
T PLN02499 7 TSYSVVSELEGTLLKDADPFSYFMLVAFEAS--G---------------------------LIRFA--LLLFLWPIIR-- 53 (498)
T ss_pred ccceEEEecccceecCCCccHHHHHHHHHhc--c---------------------------HHHHH--HHHHHhHHHH--
Confidence 445799999999998 999999999774321 1 00111 1112234310
Q ss_pred cCCHHHHHHHHHhccHHHHHHHHHHHHhCcCCCCCHHHHHHHhhcC-------cccccHHHHHHHHHHcCCCCCcEEEEe
Q 013025 341 NFNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGERL-------SLQDGCTTFFQKVVKNENLNANVHVLS 413 (451)
Q Consensus 341 ~~~~~~e~~~l~~l~~vE~~S~~~v~~s~~F~Gi~~~~~~~~~~~v-------~lr~gf~efl~~~~~~~~~~~~~~IvS 413 (451)
.+.-++ .|..-++. .-.-.|+|++.+++++.|+.+ -+|+. .++.....| .++|||
T Consensus 54 ---------ll~~~~-~~~~~lK~-mi~v~f~Gl~~~die~vaRavlpkf~~~dv~~e---~~~~~~~~g----~~vVVT 115 (498)
T PLN02499 54 ---------LLDMLG-MGDAALKL-MIFVATAGVHESEIESVARAVLPKFYMDDVDME---AWKVFSSCD----KRVVVT 115 (498)
T ss_pred ---------HHHhcC-CchHHHHH-HHHHHhCCCCHHHHHHHHHHHhhHHHHhhCCHH---HHHHHHcCC----eEEEEe
Confidence 111001 12222223 445669999999999988832 34444 333334444 889999
Q ss_pred c---ccCHHHHHHhh
Q 013025 414 Y---CWCGDLIRASF 425 (451)
Q Consensus 414 ~---nws~~fI~~~L 425 (451)
+ .|.++|.+..|
T Consensus 116 AsPrvmVEpFake~L 130 (498)
T PLN02499 116 RMPRVMVERFAKEHL 130 (498)
T ss_pred CCHHHHHHHHHHHhc
Confidence 6 67777777733
No 78
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=93.61 E-value=0.32 Score=46.51 Aligned_cols=41 Identities=5% Similarity=-0.064 Sum_probs=34.9
Q ss_pred CcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCC
Q 013025 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIH 430 (451)
Q Consensus 386 v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~ 430 (451)
..+-||-.+.+..+.+.| +++.|+|.+= ..+++.+|.++|+
T Consensus 88 ~~~~~gv~e~L~~L~~~g---~~l~i~T~k~-~~~~~~~l~~~gl 128 (220)
T COG0546 88 SRLFPGVKELLAALKSAG---YKLGIVTNKP-ERELDILLKALGL 128 (220)
T ss_pred CccCCCHHHHHHHHHhCC---CeEEEEeCCc-HHHHHHHHHHhCC
Confidence 578999999999999999 9999999876 6677888876644
No 79
>COG5398 Heme oxygenase [Inorganic ion transport and metabolism]
Probab=93.56 E-value=3.6 Score=39.44 Aligned_cols=108 Identities=18% Similarity=0.283 Sum_probs=67.7
Q ss_pred HHHHHHHcHHHHHHhhcCHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHH
Q 013025 17 ARRLWIKFKRESVFAMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAKLSISELRK-GVLEEL 95 (451)
Q Consensus 17 ~~~Lw~~~~~~~~~~~~HPFv~~La~GtL~~~~F~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~l~~~~~-~i~~E~ 95 (451)
+..|.+..+..-..+-+-.|++.+-+|-++++.|+..+.|=++...++-++...-. +++ . +..... .+.+-.
T Consensus 4 a~~lR~gt~~ah~~aEnv~fmkcfLkg~V~~e~f~kl~~n~yf~ysaleaa~~~~~---d~~-~---l~~i~fp~lnr~~ 76 (238)
T COG5398 4 AFKLRQGTQKAHTVAENVGFMKCFLKGVVERESFRKLLANLYFVYSALEAATQIHK---DNP-I---LSSIYFPELNRKA 76 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHhc---cCc-h---hhhccchhhhhHH
Confidence 44444443332233344569999999999999999999999988887766655322 111 1 000000 000011
Q ss_pred HHHHHHHHHcCCCchhccCCChHHHHHHHHHHHHhc
Q 013025 96 KMHDSFVKEWGTDLAKMATVNSATVKYTEFLLATAS 131 (451)
Q Consensus 96 ~~h~~~~~~~gi~~~~~~~~~pat~aYt~~l~~~a~ 131 (451)
.+-.++...+|-+..+.+.++|++.+|++++...+.
T Consensus 77 tle~dl~~yyg~nwre~I~~sp~t~~yv~rv~~iaa 112 (238)
T COG5398 77 TLEKDLLYYYGNNWRENIQPSPATIAYVDRVRYIAA 112 (238)
T ss_pred HhhcCHHHHhcccHHHhcCcChhHHHHHHHHHHHHh
Confidence 233334555665555678899999999999999984
No 80
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=92.88 E-value=1.2 Score=43.13 Aligned_cols=27 Identities=7% Similarity=0.194 Sum_probs=22.6
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecc
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYC 415 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~n 415 (451)
.+.+-||..++++.+++ + +++.|+|.|
T Consensus 111 ~~~~~~gv~~~L~~L~~-~---~~l~i~Tn~ 137 (238)
T PRK10748 111 RIDVPQATHDTLKQLAK-K---WPLVAITNG 137 (238)
T ss_pred cCCCCccHHHHHHHHHc-C---CCEEEEECC
Confidence 57788999999999975 4 799999873
No 81
>PLN02811 hydrolase
Probab=92.69 E-value=2.1 Score=40.66 Aligned_cols=35 Identities=6% Similarity=0.045 Sum_probs=29.3
Q ss_pred hcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHH
Q 013025 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLI 421 (451)
Q Consensus 384 ~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI 421 (451)
+.+.+.||..++++.++++| +++.|+|.+....+.
T Consensus 75 ~~~~l~~gv~e~l~~L~~~g---~~~~i~S~~~~~~~~ 109 (220)
T PLN02811 75 PTSDLMPGAERLVRHLHAKG---IPIAIATGSHKRHFD 109 (220)
T ss_pred hhCCCCccHHHHHHHHHHCC---CcEEEEeCCchhhHH
Confidence 46788999999999999988 999999987744343
No 82
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=92.64 E-value=1.2 Score=44.38 Aligned_cols=44 Identities=7% Similarity=-0.079 Sum_probs=33.0
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccC--HHHHHHhhccCCCc
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWC--GDLIRASFSSGIHI 431 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws--~~fI~~~L~~~~~~ 431 (451)
...+-||..+|++.+.++| ++++|||.+-. .......|.+.|++
T Consensus 116 ~a~~ipGA~e~L~~L~~~G---~~v~iVTnR~~~~~~~T~~~Lkk~Gi~ 161 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKG---VKIFYVSNRSEKEKAATLKNLKRFGFP 161 (266)
T ss_pred CCCcCccHHHHHHHHHHCC---CeEEEEeCCCcchHHHHHHHHHHcCcC
Confidence 5567899999999999999 99999998652 33334556666654
No 83
>PHA02597 30.2 hypothetical protein; Provisional
Probab=91.90 E-value=0.67 Score=43.03 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=21.3
Q ss_pred hcCcccccHHHHHHHHHHcCCCCCcEEEEec
Q 013025 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSY 414 (451)
Q Consensus 384 ~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~ 414 (451)
+.+.+.||..++++.+++.+ ++.|+|.
T Consensus 71 ~~~~~~pG~~e~L~~L~~~~----~~~i~Tn 97 (197)
T PHA02597 71 RYLSAYDDALDVINKLKEDY----DFVAVTA 97 (197)
T ss_pred HhccCCCCHHHHHHHHHhcC----CEEEEeC
Confidence 45678999999999998754 6777764
No 84
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=91.75 E-value=0.074 Score=48.75 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=18.2
Q ss_pred EEEeccCCccchhhcHHHHHH
Q 013025 265 IIFSDFDLTCTIVDSSAILAE 285 (451)
Q Consensus 265 ~ii~DFDgTIT~~DTi~~l~~ 285 (451)
+||+|.|||||.+|+...+..
T Consensus 1 VVvsDIDGTiT~SD~~G~i~~ 21 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHILP 21 (157)
T ss_pred CEEEeccCCcCccchhhhhhh
Confidence 589999999999998777655
No 85
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=90.25 E-value=1.3 Score=42.96 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=25.7
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecc
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYC 415 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~n 415 (451)
.+.+-||-..+++.+..+| +|+.+.|..
T Consensus 90 ~~~~~PGa~kLv~~L~~~g---ip~alat~s 117 (222)
T KOG2914|consen 90 NSILMPGAEKLVNHLKNNG---IPVALATSS 117 (222)
T ss_pred ccccCCcHHHHHHHHHhCC---CCeeEEecC
Confidence 6788899999999999999 999999964
No 86
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=87.87 E-value=1.2 Score=43.67 Aligned_cols=42 Identities=5% Similarity=-0.102 Sum_probs=31.9
Q ss_pred CcccccHHHHHHHHHHcCCCCCcEEEEecc---cCHHHHHHhhccCCC
Q 013025 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYC---WCGDLIRASFSSGIH 430 (451)
Q Consensus 386 v~lr~gf~efl~~~~~~~~~~~~~~IvS~n---ws~~fI~~~L~~~~~ 430 (451)
..+-||..+|++.++++| ++++|||.. -.....+.+++..|+
T Consensus 113 a~p~~Ga~elL~~L~~~G---~~I~iVTnR~~~k~~~t~~~Llk~~gi 157 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRG---DSIYFITGRTATKTETVSKTLADDFHI 157 (237)
T ss_pred CcchHHHHHHHHHHHHCC---CeEEEEeCCCCcccHHHHHHHHHHcCC
Confidence 567788999999999999 999999983 235566666654555
No 87
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=84.43 E-value=0.51 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.215 Sum_probs=20.1
Q ss_pred CeEEEeccCCccchhhcHHHHHH
Q 013025 263 RLIIFSDFDLTCTIVDSSAILAE 285 (451)
Q Consensus 263 ~~~ii~DFDgTIT~~DTi~~l~~ 285 (451)
-.+||.|.|||||..|++..++-
T Consensus 530 ~kIVISDIDGTITKSDvLGh~lp 552 (738)
T KOG2116|consen 530 DKIVISDIDGTITKSDVLGHVLP 552 (738)
T ss_pred CcEEEecCCCceEhhhhhhhhhh
Confidence 34899999999999999988765
No 88
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=82.04 E-value=0.45 Score=43.37 Aligned_cols=21 Identities=33% Similarity=0.294 Sum_probs=17.7
Q ss_pred EEEeccCCccchhhcHHHHHH
Q 013025 265 IIFSDFDLTCTIVDSSAILAE 285 (451)
Q Consensus 265 ~ii~DFDgTIT~~DTi~~l~~ 285 (451)
+|++|.|||||..|++..+..
T Consensus 1 iVisDIDGTL~~sd~~~~~~~ 21 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVP 21 (157)
T ss_pred CEEEecCCCCccccccccccc
Confidence 589999999999998766655
No 89
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=79.83 E-value=3.7 Score=37.05 Aligned_cols=36 Identities=11% Similarity=-0.045 Sum_probs=24.1
Q ss_pred hhcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCC
Q 013025 383 GERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGI 429 (451)
Q Consensus 383 ~~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~ 429 (451)
.+.+.+.||-.++++. +.|+|.+ +...++..+++.|
T Consensus 86 ~~~~~~~~g~~~~L~~----------~~i~Tn~-~~~~~~~~l~~~~ 121 (175)
T TIGR01493 86 YKNLPPWPDSAAALAR----------VAILSNA-SHWAFDQFAQQAG 121 (175)
T ss_pred HhcCCCCCchHHHHHH----------HhhhhCC-CHHHHHHHHHHCC
Confidence 4467899999999983 3566644 3556666665553
No 90
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=79.46 E-value=1.4 Score=46.41 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=20.6
Q ss_pred CeEEEeccCCccchhhcHHHHHHHH
Q 013025 263 RLIIFSDFDLTCTIVDSSAILAEIA 287 (451)
Q Consensus 263 ~~~ii~DFDgTIT~~DTi~~l~~~~ 287 (451)
..+||+|.|||||+.|...-+.++.
T Consensus 375 ~kiVVsDiDGTITkSD~~Ghv~~mi 399 (580)
T COG5083 375 KKIVVSDIDGTITKSDALGHVKQMI 399 (580)
T ss_pred CcEEEEecCCcEEehhhHHHHHHHh
Confidence 4489999999999999996665544
No 91
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=78.15 E-value=1.7 Score=42.13 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=19.4
Q ss_pred CCeEEEeccCCccch-----------hhcHHHHHHHH
Q 013025 262 DRLIIFSDFDLTCTI-----------VDSSAILAEIA 287 (451)
Q Consensus 262 ~~~~ii~DFDgTIT~-----------~DTi~~l~~~~ 287 (451)
++.+|++|||||++. ..+...|.+++
T Consensus 2 ~~~~l~lD~DGTL~~~~~~p~~~~~~~~~~~~L~~L~ 38 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPDPDAAVVSDRLLTILQKLA 38 (244)
T ss_pred CcEEEEEecCccccCCcCCCcccCCCHHHHHHHHHHH
Confidence 567899999999975 34556666665
No 92
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=77.43 E-value=34 Score=31.88 Aligned_cols=39 Identities=8% Similarity=-0.069 Sum_probs=27.7
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccC
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSG 428 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~ 428 (451)
....-|+..+++..+..+ .++.|+|-|- .......|.+.
T Consensus 97 ~~~~~~~~~~~L~~l~~~----~~l~ilTNg~-~~~~~~~l~~~ 135 (229)
T COG1011 97 LLPDYPEALEALKELGKK----YKLGILTNGA-RPHQERKLRQL 135 (229)
T ss_pred hCccChhHHHHHHHHHhh----ccEEEEeCCC-hHHHHHHHHHc
Confidence 367788888888887654 6899999874 45555555543
No 93
>COG4996 Predicted phosphatase [General function prediction only]
Probab=73.94 E-value=2.1 Score=38.26 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=26.0
Q ss_pred HHhhcCcccccHHHHHHHHHHcCCCCCcEEEEe-cccCHHH
Q 013025 381 KAGERLSLQDGCTTFFQKVVKNENLNANVHVLS-YCWCGDL 420 (451)
Q Consensus 381 ~~~~~v~lr~gf~efl~~~~~~~~~~~~~~IvS-~nws~~f 420 (451)
.-|..+.|+|.-.+|+++++..| +||| ..|..++
T Consensus 35 s~G~ev~L~~~v~~~l~warnsG------~i~~~~sWN~~~ 69 (164)
T COG4996 35 SKGREVHLFPDVKETLKWARNSG------YILGLASWNFED 69 (164)
T ss_pred CCCeEEEEcHHHHHHHHHHHhCC------cEEEEeecCchH
Confidence 34678999999999999999888 6665 3664433
No 94
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=69.87 E-value=10 Score=32.63 Aligned_cols=42 Identities=5% Similarity=-0.103 Sum_probs=33.4
Q ss_pred CcccccHHHHHHHHHHcCCCCCcEEEEecccC-------HHHHHHhhccCCC
Q 013025 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWC-------GDLIRASFSSGIH 430 (451)
Q Consensus 386 v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws-------~~fI~~~L~~~~~ 430 (451)
..+.||..++++.+++.| +++.|+|.++. ...++..+.+.++
T Consensus 24 ~~~~~~v~~~l~~L~~~g---~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l 72 (132)
T TIGR01662 24 RILYPEVPDALAELKEAG---YKVVIVTNQSGIGRGKFSSGRVARRLEELGV 72 (132)
T ss_pred heeCCCHHHHHHHHHHCC---CEEEEEECCccccccHHHHHHHHHHHHHCCC
Confidence 368899999999999999 99999998871 4566777766543
No 95
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=69.37 E-value=5.1 Score=34.91 Aligned_cols=40 Identities=13% Similarity=-0.110 Sum_probs=35.5
Q ss_pred cccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCC
Q 013025 387 SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGI 429 (451)
Q Consensus 387 ~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~ 429 (451)
.+.||..++++.++++| +++.|+|.++...++..+++..+
T Consensus 29 ~~~~gv~e~L~~Lk~~g---~~l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNG---FLLALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred HHHHHHHHHHHHHHHCC---eEEEEEeCCCCHHHHHHHHHhcc
Confidence 68899999999999999 99999999988888888886554
No 96
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=68.71 E-value=7.4 Score=36.22 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=35.7
Q ss_pred HhhcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCC
Q 013025 382 AGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGI 429 (451)
Q Consensus 382 ~~~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~ 429 (451)
.+.++.+.||-.++++.++++| +++.|+|.+=....++.+|...+
T Consensus 40 ~~~~~~l~pGv~elL~~Lk~~G---~~l~I~Sn~~~~~~~~~~L~~~~ 84 (174)
T TIGR01685 40 SGTEVTLIKEVRDVLQTLKDAG---TYLATASWNDVPEWAYEILGTFE 84 (174)
T ss_pred CCCEEEEcccHHHHHHHHHHCC---CEEEEEeCCCChHHHHHHHHhCC
Confidence 3457899999999999999999 99999998733556666665554
No 97
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=68.26 E-value=4.5 Score=40.01 Aligned_cols=15 Identities=27% Similarity=0.169 Sum_probs=13.2
Q ss_pred CCeEEEeccCCccch
Q 013025 262 DRLIIFSDFDLTCTI 276 (451)
Q Consensus 262 ~~~~ii~DFDgTIT~ 276 (451)
.+.+|++|||||++.
T Consensus 13 ~~~li~~D~DGTLl~ 27 (266)
T PRK10187 13 ANYAWFFDLDGTLAE 27 (266)
T ss_pred CCEEEEEecCCCCCC
Confidence 457999999999997
No 98
>PLN02151 trehalose-phosphatase
Probab=68.22 E-value=4.2 Score=42.16 Aligned_cols=15 Identities=33% Similarity=0.767 Sum_probs=13.5
Q ss_pred CCCeEEEeccCCccc
Q 013025 261 GDRLIIFSDFDLTCT 275 (451)
Q Consensus 261 ~~~~~ii~DFDgTIT 275 (451)
..+++|++|||||+.
T Consensus 96 ~~~~ll~lDyDGTL~ 110 (354)
T PLN02151 96 GKQIVMFLDYDGTLS 110 (354)
T ss_pred CCceEEEEecCccCC
Confidence 467899999999999
No 99
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=67.59 E-value=6.2 Score=35.22 Aligned_cols=41 Identities=7% Similarity=0.007 Sum_probs=33.1
Q ss_pred hcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCC
Q 013025 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGI 429 (451)
Q Consensus 384 ~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~ 429 (451)
..+.+|||..+|++++. ++ +++.|+|.+= ...++.+|++.+
T Consensus 42 ~~v~l~pG~~e~L~~L~-~~---~~l~I~Ts~~-~~~~~~il~~l~ 82 (148)
T smart00577 42 VYVKKRPGVDEFLKRAS-EL---FELVVFTAGL-RMYADPVLDLLD 82 (148)
T ss_pred EEEEECCCHHHHHHHHH-hc---cEEEEEeCCc-HHHHHHHHHHhC
Confidence 36789999999999997 56 8999999876 666677776543
No 100
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=67.55 E-value=36 Score=31.56 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=18.2
Q ss_pred CeEEEeccCCccchhhcHHHHHHHHHH
Q 013025 263 RLIIFSDFDLTCTIVDSSAILAEIAIV 289 (451)
Q Consensus 263 ~~~ii~DFDgTIT~~DTi~~l~~~~~~ 289 (451)
++-|.+|+||||+ |+...+.+..-.
T Consensus 2 ~i~I~iDiDgVLa--d~~~~~~~~~n~ 26 (191)
T PF06941_consen 2 KIRIAIDIDGVLA--DFNSAFIEWFNE 26 (191)
T ss_dssp -EEEEEESBTTTB---HHHHHHHHHHH
T ss_pred CcEEEEECCCCCc--ccHHHHHHHHHH
Confidence 3449999999999 778877776533
No 101
>PLN02580 trehalose-phosphatase
Probab=66.50 E-value=3.1 Score=43.64 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=19.7
Q ss_pred CCCeEEEeccCCccc-----------hhhcHHHHHHHH
Q 013025 261 GDRLIIFSDFDLTCT-----------IVDSSAILAEIA 287 (451)
Q Consensus 261 ~~~~~ii~DFDgTIT-----------~~DTi~~l~~~~ 287 (451)
..++++++|||||++ ..++...|-+++
T Consensus 117 ~k~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~aL~~La 154 (384)
T PLN02580 117 GKKIALFLDYDGTLSPIVDDPDRALMSDAMRSAVKNVA 154 (384)
T ss_pred cCCeEEEEecCCccCCCCCCcccccCCHHHHHHHHHHh
Confidence 467899999999996 335556666655
No 102
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=65.96 E-value=2.6 Score=39.28 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=12.3
Q ss_pred EEEeccCCccchhh
Q 013025 265 IIFSDFDLTCTIVD 278 (451)
Q Consensus 265 ~ii~DFDgTIT~~D 278 (451)
+|++|+|||++..|
T Consensus 1 li~~D~DgTL~~~~ 14 (204)
T TIGR01484 1 LLFFDLDGTLLDPN 14 (204)
T ss_pred CEEEeCcCCCcCCC
Confidence 58999999999866
No 103
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=65.27 E-value=3.5 Score=41.12 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=21.2
Q ss_pred CCCeEEEeccCCccch-----------hhcHHHHHHHH
Q 013025 261 GDRLIIFSDFDLTCTI-----------VDSSAILAEIA 287 (451)
Q Consensus 261 ~~~~~ii~DFDgTIT~-----------~DTi~~l~~~~ 287 (451)
+++.++++|||||+|. ...+.+|.+++
T Consensus 16 a~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL~~La 53 (266)
T COG1877 16 ARKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLA 53 (266)
T ss_pred ccceEEEEeccccccccccCccccCCCHHHHHHHHHHH
Confidence 4788999999999984 45667777766
No 104
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=62.97 E-value=10 Score=38.43 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=37.4
Q ss_pred cCccc-ccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCCc
Q 013025 385 RLSLQ-DGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIHI 431 (451)
Q Consensus 385 ~v~lr-~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~~ 431 (451)
+++|| ||..+.++.++++| +++.|+|.+= +..+...|+..|+.
T Consensus 143 ~v~irdPgV~EaL~~LkekG---ikLaIaTS~~-Re~v~~~L~~lGLd 186 (301)
T TIGR01684 143 PVRIRDPRIYDSLTELKKRG---CILVLWSYGD-RDHVVESMRKVKLD 186 (301)
T ss_pred ccccCCHHHHHHHHHHHHCC---CEEEEEECCC-HHHHHHHHHHcCCC
Confidence 57899 99999999999999 9999999885 77778888777665
No 105
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=61.53 E-value=48 Score=27.51 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCchh---ccCCChHHHHHHHHHHHHhc-CCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHH----H
Q 013025 96 KMHDSFVKEWGTDLAK---MATVNSATVKYTEFLLATAS-GKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCMRL----Y 167 (451)
Q Consensus 96 ~~h~~~~~~~gi~~~~---~~~~~pat~aYt~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~PC~~~----Y 167 (451)
.+++++++.+|++.+. .....|.+.++.+.++..+. .+. +..++++++.-+.. |
T Consensus 20 ~Lf~~~L~~~Gi~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~------------------~~~~lG~~~~~E~~~~~~~ 81 (106)
T PF14518_consen 20 ELFRRFLRALGIDDEPGAYRDPYPPETLALINLFLALCLHRSH------------------YPEALGALLATESSVPQIY 81 (106)
T ss_dssp HHHHHHHHHTT-----TT-----HHHHHHHHHHHHHH--H-SS------------------THHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHcCCCCccccccccCCHHHHHHHHHHHHhcccchh------------------HHHHHHHHHHHhhcChHHH
Confidence 5788899999999862 22356789999999988874 333 14566776665544 4
Q ss_pred HHHHHHHHh
Q 013025 168 AFLGKEFHA 176 (451)
Q Consensus 168 ~~ig~~l~~ 176 (451)
..+.+.+.+
T Consensus 82 ~~~~~~l~r 90 (106)
T PF14518_consen 82 RRLIKGLRR 90 (106)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 106
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=61.41 E-value=5 Score=39.18 Aligned_cols=16 Identities=31% Similarity=0.156 Sum_probs=13.3
Q ss_pred CeEEEeccCCccchhh
Q 013025 263 RLIIFSDFDLTCTIVD 278 (451)
Q Consensus 263 ~~~ii~DFDgTIT~~D 278 (451)
+.+|++|||||++..|
T Consensus 2 ~~ll~sDlD~Tl~~~~ 17 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGD 17 (247)
T ss_dssp SEEEEEETBTTTBHCH
T ss_pred CEEEEEECCCCCcCCC
Confidence 6799999999999333
No 107
>PLN03017 trehalose-phosphatase
Probab=61.30 E-value=4.7 Score=42.03 Aligned_cols=15 Identities=33% Similarity=0.767 Sum_probs=13.5
Q ss_pred CCCeEEEeccCCccc
Q 013025 261 GDRLIIFSDFDLTCT 275 (451)
Q Consensus 261 ~~~~~ii~DFDgTIT 275 (451)
..+++|++|||||++
T Consensus 109 ~k~~llflD~DGTL~ 123 (366)
T PLN03017 109 GKQIVMFLDYDGTLS 123 (366)
T ss_pred CCCeEEEEecCCcCc
Confidence 467899999999999
No 108
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=60.02 E-value=13 Score=35.93 Aligned_cols=25 Identities=8% Similarity=0.139 Sum_probs=21.9
Q ss_pred cccccHHHHHHHHHHcCCCCCcEEEEec
Q 013025 387 SLQDGCTTFFQKVVKNENLNANVHVLSY 414 (451)
Q Consensus 387 ~lr~gf~efl~~~~~~~~~~~~~~IvS~ 414 (451)
.-=||-.+|++.+.++| +.|+.||.
T Consensus 115 ~aip~a~~l~~~~~~~G---~~V~~iT~ 139 (229)
T PF03767_consen 115 PAIPGALELYNYARSRG---VKVFFITG 139 (229)
T ss_dssp EEETTHHHHHHHHHHTT---EEEEEEEE
T ss_pred cccHHHHHHHHHHHHCC---CeEEEEec
Confidence 44577889999999999 99999996
No 109
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=59.04 E-value=8.8 Score=43.51 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=19.7
Q ss_pred CCCeEEEeccCCccch-----------hhcHHHHHHHH
Q 013025 261 GDRLIIFSDFDLTCTI-----------VDSSAILAEIA 287 (451)
Q Consensus 261 ~~~~~ii~DFDgTIT~-----------~DTi~~l~~~~ 287 (451)
..+.+|++|+|||+|. .++...|-++.
T Consensus 490 ~~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~ 527 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLA 527 (726)
T ss_pred ccceEEEEecCccccCCCCCcccCCCCHHHHHHHHHHH
Confidence 3567999999999995 35555665554
No 110
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=59.01 E-value=5 Score=38.86 Aligned_cols=14 Identities=43% Similarity=0.529 Sum_probs=12.5
Q ss_pred CeEEEeccCCccch
Q 013025 263 RLIIFSDFDLTCTI 276 (451)
Q Consensus 263 ~~~ii~DFDgTIT~ 276 (451)
|++|++|+|||+..
T Consensus 1 ~~li~tDlDGTLl~ 14 (249)
T TIGR01485 1 RLLLVSDLDNTLVD 14 (249)
T ss_pred CeEEEEcCCCcCcC
Confidence 56899999999996
No 111
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=58.20 E-value=4.4 Score=37.62 Aligned_cols=16 Identities=13% Similarity=0.065 Sum_probs=13.5
Q ss_pred CCeEEEeccCCccchh
Q 013025 262 DRLIIFSDFDLTCTIV 277 (451)
Q Consensus 262 ~~~~ii~DFDgTIT~~ 277 (451)
...+|++|+|||+|..
T Consensus 20 ~ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 20 NIRLLICDVDGVFSDG 35 (183)
T ss_pred CceEEEEcCCeeeecC
Confidence 4569999999999974
No 112
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=55.57 E-value=5.7 Score=37.40 Aligned_cols=15 Identities=27% Similarity=0.197 Sum_probs=12.7
Q ss_pred EEEeccCCccchhhc
Q 013025 265 IIFSDFDLTCTIVDS 279 (451)
Q Consensus 265 ~ii~DFDgTIT~~DT 279 (451)
+|++|+|||+...|.
T Consensus 3 ~v~~DlDGTLl~~~~ 17 (215)
T TIGR01487 3 LVAIDIDGTLTEPNR 17 (215)
T ss_pred EEEEecCCCcCCCCc
Confidence 789999999997653
No 113
>PLN02423 phosphomannomutase
Probab=55.20 E-value=7.3 Score=37.95 Aligned_cols=18 Identities=28% Similarity=0.134 Sum_probs=14.3
Q ss_pred CCCeEEEeccCCccchhh
Q 013025 261 GDRLIIFSDFDLTCTIVD 278 (451)
Q Consensus 261 ~~~~~ii~DFDgTIT~~D 278 (451)
.++.++++|.|||+...|
T Consensus 5 ~~~~i~~~D~DGTLl~~~ 22 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPR 22 (245)
T ss_pred ccceEEEEeccCCCcCCC
Confidence 356688899999998655
No 114
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.08 E-value=1e+02 Score=30.39 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHhhc-CcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccC
Q 013025 371 LKGINLEDIKKAGER-LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSG 428 (451)
Q Consensus 371 F~Gi~~~~~~~~~~~-v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~ 428 (451)
-+|+|.+++++..+. ..+-||..+-+..+... ++-+|+|-.+ ...++..-+.-
T Consensus 66 ahGVt~~dlrr~sE~sa~lvPgA~etm~~l~~~----~tp~v~STSY-~qy~~r~a~~i 119 (315)
T COG4030 66 AHGVTNRDLRRISELSAKLVPGAEETMATLQER----WTPVVISTSY-TQYLRRTASMI 119 (315)
T ss_pred HhcCcHHHHHHHHHhhcccCCChHHHHHHHhcc----CCceEEeccH-HHHHHHHHHhc
Confidence 467999999999984 89999999999998764 7899999999 55666654333
No 115
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=53.77 E-value=6.4 Score=36.25 Aligned_cols=43 Identities=16% Similarity=0.027 Sum_probs=36.1
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCCc
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIHI 431 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~~ 431 (451)
.-.+|||-.++++.+++.| +++.|+|.+- ......+....|+.
T Consensus 125 ~d~~~~~~~~~l~~L~~~G---i~~~i~TGD~-~~~a~~~~~~lgi~ 167 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAG---IKVAILTGDN-ESTASAIAKQLGIF 167 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTT---EEEEEEESSE-HHHHHHHHHHTTSC
T ss_pred cCcchhhhhhhhhhhhccC---cceeeeeccc-cccccccccccccc
Confidence 5589999999999999999 9999999876 66667777777664
No 116
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=53.62 E-value=17 Score=36.84 Aligned_cols=43 Identities=7% Similarity=0.000 Sum_probs=37.3
Q ss_pred cCccc-ccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCCc
Q 013025 385 RLSLQ-DGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIHI 431 (451)
Q Consensus 385 ~v~lr-~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~~ 431 (451)
+++|| ||-.+.++.++++| +++.|+|.|= +..++..|...|+.
T Consensus 145 ~v~irdp~V~EtL~eLkekG---ikLaIvTNg~-Re~v~~~Le~lgL~ 188 (303)
T PHA03398 145 PVRIRDPFVYDSLDELKERG---CVLVLWSYGN-REHVVHSLKETKLE 188 (303)
T ss_pred ccccCChhHHHHHHHHHHCC---CEEEEEcCCC-hHHHHHHHHHcCCC
Confidence 67899 99999999999999 9999999884 66778888877665
No 117
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=53.49 E-value=9.1 Score=39.73 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=26.3
Q ss_pred hhcCcccccHHHHHHHHHHcCCCCCcEEEEec
Q 013025 383 GERLSLQDGCTTFFQKVVKNENLNANVHVLSY 414 (451)
Q Consensus 383 ~~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~ 414 (451)
.+.+.+.||+.+++..++++| +++.|+|.
T Consensus 26 ~~~~~l~pGV~e~L~~Lk~~G---~kL~IvTN 54 (354)
T PRK05446 26 LDKLAFEPGVIPALLKLQKAG---YKLVMVTN 54 (354)
T ss_pred cccceECcCHHHHHHHHHhCC---CeEEEEEC
Confidence 345899999999999999888 99999998
No 118
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=52.81 E-value=15 Score=33.38 Aligned_cols=40 Identities=8% Similarity=0.042 Sum_probs=32.6
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCC
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGI 429 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~ 429 (451)
.+.+|||..+|++.+.+. .+++|.|.+= +...+.++...+
T Consensus 40 ~v~~RPgl~eFL~~l~~~----yei~I~Ts~~-~~yA~~il~~ld 79 (162)
T TIGR02251 40 YVFKRPHVDEFLERVSKW----YELVIFTASL-EEYADPVLDILD 79 (162)
T ss_pred EEEECCCHHHHHHHHHhc----CEEEEEcCCc-HHHHHHHHHHHC
Confidence 688999999999999764 6999999885 777777776443
No 119
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=52.34 E-value=6.9 Score=36.96 Aligned_cols=16 Identities=38% Similarity=0.125 Sum_probs=13.1
Q ss_pred eEEEeccCCccchhhc
Q 013025 264 LIIFSDFDLTCTIVDS 279 (451)
Q Consensus 264 ~~ii~DFDgTIT~~DT 279 (451)
.+|++|+|||+...|-
T Consensus 4 kli~~DlDGTLl~~~~ 19 (230)
T PRK01158 4 KAIAIDIDGTITDKDR 19 (230)
T ss_pred eEEEEecCCCcCCCCC
Confidence 4889999999986554
No 120
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=51.48 E-value=7.7 Score=37.69 Aligned_cols=18 Identities=17% Similarity=-0.049 Sum_probs=15.1
Q ss_pred CCeEEEeccCCccchhhc
Q 013025 262 DRLIIFSDFDLTCTIVDS 279 (451)
Q Consensus 262 ~~~~ii~DFDgTIT~~DT 279 (451)
+..+|++|.|||++.+|.
T Consensus 2 ~~kli~~DlDGTLl~~~~ 19 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNK 19 (264)
T ss_pred CeeEEEEcCCCCccCCCC
Confidence 346899999999988776
No 121
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=51.32 E-value=80 Score=30.81 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=23.0
Q ss_pred CcccccHHHHHHHHHHcCCCCCcEEEEeccc
Q 013025 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCW 416 (451)
Q Consensus 386 v~lr~gf~efl~~~~~~~~~~~~~~IvS~nw 416 (451)
..--||-.+|++.++++| +.+.+||.-.
T Consensus 119 apaip~al~l~~~l~~~G---~~Vf~lTGR~ 146 (229)
T TIGR01675 119 APALPEGLKLYQKIIELG---IKIFLLSGRW 146 (229)
T ss_pred CCCCHHHHHHHHHHHHCC---CEEEEEcCCC
Confidence 466788889999999888 9999999743
No 122
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=50.91 E-value=6.4 Score=37.68 Aligned_cols=15 Identities=33% Similarity=0.332 Sum_probs=12.3
Q ss_pred EEEeccCCccchhhc
Q 013025 265 IIFSDFDLTCTIVDS 279 (451)
Q Consensus 265 ~ii~DFDgTIT~~DT 279 (451)
+|++|+|||+...|.
T Consensus 1 li~~DlDgTLl~~~~ 15 (236)
T TIGR02471 1 LIITDLDNTLLGDDE 15 (236)
T ss_pred CeEEeccccccCCHH
Confidence 578999999987653
No 123
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=50.07 E-value=16 Score=37.72 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=41.7
Q ss_pred HHHHHHhCcCCCCCHHHHHHHhhcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccC
Q 013025 362 NSRVIESGVLKGINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSG 428 (451)
Q Consensus 362 ~~~v~~s~~F~Gi~~~~~~~~~~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~ 428 (451)
+..|-.+|.|+-...++. .+-+...||..++++.++++| +++.|+|..= ..+++.++...
T Consensus 162 v~~~h~~g~lk~~v~~dp---~~yv~~~pgl~elL~~Lr~~G---~klfLvTNS~-~~yt~~im~~l 221 (343)
T TIGR02244 162 LDWVHRKGSLKKKVMENP---EKYVLRDPKLPLFLSKLKEHG---KKLFLLTNSD-YDYTDKGMKYL 221 (343)
T ss_pred HHHhcccchHHHHHHHCH---HHHhccchhHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHh
Confidence 445555666663333333 334667999999999999999 9999999763 55667666553
No 124
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=48.55 E-value=15 Score=42.48 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=19.1
Q ss_pred CCeEEEeccCCccchh---------hcHHHHHHHH
Q 013025 262 DRLIIFSDFDLTCTIV---------DSSAILAEIA 287 (451)
Q Consensus 262 ~~~~ii~DFDgTIT~~---------DTi~~l~~~~ 287 (451)
++.+|++|||||++.. .++.+|-+++
T Consensus 595 ~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L~~L~ 629 (854)
T PLN02205 595 TTRAILLDYDGTLMPQASIDKSPSSKSIDILNTLC 629 (854)
T ss_pred cCeEEEEecCCcccCCccccCCCCHHHHHHHHHHH
Confidence 5779999999999843 3556666654
No 125
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=48.06 E-value=9.2 Score=33.75 Aligned_cols=13 Identities=31% Similarity=0.365 Sum_probs=11.3
Q ss_pred EEEeccCCccchh
Q 013025 265 IIFSDFDLTCTIV 277 (451)
Q Consensus 265 ~ii~DFDgTIT~~ 277 (451)
++++|.||||+..
T Consensus 3 ~i~~DiDGTL~~~ 15 (126)
T TIGR01689 3 RLVMDLDNTITLT 15 (126)
T ss_pred EEEEeCCCCcccC
Confidence 7899999999763
No 126
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=48.02 E-value=26 Score=29.34 Aligned_cols=42 Identities=7% Similarity=-0.063 Sum_probs=32.3
Q ss_pred cccccHHHHHHHHHHcCCCCCcEEEEec--ccCHHHHHHhhccCCCc
Q 013025 387 SLQDGCTTFFQKVVKNENLNANVHVLSY--CWCGDLIRASFSSGIHI 431 (451)
Q Consensus 387 ~lr~gf~efl~~~~~~~~~~~~~~IvS~--nws~~fI~~~L~~~~~~ 431 (451)
..=||-.+|++.+++.| .++++||- +.+..-+..-|...|+.
T Consensus 14 ~~ipga~e~l~~L~~~g---~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 14 EPIPGAVEALDALRERG---KPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp EE-TTHHHHHHHHHHTT---SEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred CcCcCHHHHHHHHHHcC---CCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 35689999999999999 99999996 46655666666777766
No 127
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=47.85 E-value=11 Score=43.27 Aligned_cols=15 Identities=20% Similarity=0.124 Sum_probs=13.0
Q ss_pred CCeEEEeccCCccch
Q 013025 262 DRLIIFSDFDLTCTI 276 (451)
Q Consensus 262 ~~~~ii~DFDgTIT~ 276 (451)
.+.+|++|||||++.
T Consensus 506 ~~rll~LDyDGTL~~ 520 (797)
T PLN03063 506 NNRLLILGFYGTLTE 520 (797)
T ss_pred cCeEEEEecCccccC
Confidence 567999999999984
No 128
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=47.82 E-value=7.9 Score=36.03 Aligned_cols=19 Identities=26% Similarity=-0.087 Sum_probs=15.8
Q ss_pred EEEeccCCccchhhcHHHH
Q 013025 265 IIFSDFDLTCTIVDSSAIL 283 (451)
Q Consensus 265 ~ii~DFDgTIT~~DTi~~l 283 (451)
-+++|.|||||..+|..-.
T Consensus 8 ~~ciDIDGtit~~~t~~~~ 26 (194)
T COG5663 8 RCCIDIDGTITDDPTFAPY 26 (194)
T ss_pred heeeccCCceecCcccchh
Confidence 4789999999999986543
No 129
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=47.63 E-value=9.2 Score=33.93 Aligned_cols=13 Identities=23% Similarity=0.066 Sum_probs=11.2
Q ss_pred EEEeccCCccchh
Q 013025 265 IIFSDFDLTCTIV 277 (451)
Q Consensus 265 ~ii~DFDgTIT~~ 277 (451)
.+++|+|||+|..
T Consensus 2 ~~~~d~dgtl~~~ 14 (147)
T TIGR01656 2 ALFLDRDGVINED 14 (147)
T ss_pred eEEEeCCCceecc
Confidence 6899999999964
No 130
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=47.52 E-value=8.1 Score=36.42 Aligned_cols=15 Identities=40% Similarity=0.335 Sum_probs=12.7
Q ss_pred EEEeccCCccchhhc
Q 013025 265 IIFSDFDLTCTIVDS 279 (451)
Q Consensus 265 ~ii~DFDgTIT~~DT 279 (451)
+|++|.|||++..|.
T Consensus 1 ~i~~DlDGTLL~~~~ 15 (221)
T TIGR02463 1 WVFSDLDGTLLDSHS 15 (221)
T ss_pred CEEEeCCCCCcCCCC
Confidence 489999999998664
No 131
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=46.76 E-value=10 Score=33.04 Aligned_cols=15 Identities=27% Similarity=0.224 Sum_probs=12.6
Q ss_pred EEEeccCCccchhhc
Q 013025 265 IIFSDFDLTCTIVDS 279 (451)
Q Consensus 265 ~ii~DFDgTIT~~DT 279 (451)
++++|+|||++..+.
T Consensus 2 li~~DlD~Tl~~~~~ 16 (128)
T TIGR01681 2 VIVFDLDNTLWTGEN 16 (128)
T ss_pred EEEEeCCCCCCCCCc
Confidence 689999999997643
No 132
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=45.85 E-value=11 Score=32.52 Aligned_cols=12 Identities=33% Similarity=0.094 Sum_probs=10.8
Q ss_pred EEEeccCCccch
Q 013025 265 IIFSDFDLTCTI 276 (451)
Q Consensus 265 ~ii~DFDgTIT~ 276 (451)
++++|+||||+.
T Consensus 2 ~~~~D~dgtL~~ 13 (132)
T TIGR01662 2 GVVLDLDGTLTD 13 (132)
T ss_pred EEEEeCCCceec
Confidence 689999999993
No 133
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=43.08 E-value=9.4 Score=35.84 Aligned_cols=14 Identities=43% Similarity=0.235 Sum_probs=11.5
Q ss_pred EEeccCCccchhhc
Q 013025 266 IFSDFDLTCTIVDS 279 (451)
Q Consensus 266 ii~DFDgTIT~~DT 279 (451)
|++|+|||+...|.
T Consensus 1 i~~DlDGTLl~~~~ 14 (225)
T TIGR01482 1 IASDIDGTLTDPNR 14 (225)
T ss_pred CeEeccCccCCCCc
Confidence 58999999987653
No 134
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=42.79 E-value=13 Score=36.38 Aligned_cols=19 Identities=37% Similarity=0.455 Sum_probs=15.5
Q ss_pred CCCeEEEeccCCccchhhc
Q 013025 261 GDRLIIFSDFDLTCTIVDS 279 (451)
Q Consensus 261 ~~~~~ii~DFDgTIT~~DT 279 (451)
.++.+|++|.|||++..|.
T Consensus 5 ~~~~lI~~DlDGTLL~~~~ 23 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHT 23 (271)
T ss_pred CCCeEEEEeCccCCcCCCC
Confidence 4677999999999987554
No 135
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=42.15 E-value=12 Score=34.90 Aligned_cols=12 Identities=50% Similarity=0.448 Sum_probs=10.2
Q ss_pred EEeccCCccchh
Q 013025 266 IFSDFDLTCTIV 277 (451)
Q Consensus 266 ii~DFDgTIT~~ 277 (451)
|++|+|||+...
T Consensus 1 i~~DlDGTLl~~ 12 (254)
T PF08282_consen 1 IFSDLDGTLLNS 12 (254)
T ss_dssp EEEECCTTTCST
T ss_pred cEEEECCceecC
Confidence 689999999763
No 136
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=42.11 E-value=14 Score=33.80 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=13.0
Q ss_pred CCeEEEeccCCccchh
Q 013025 262 DRLIIFSDFDLTCTIV 277 (451)
Q Consensus 262 ~~~~ii~DFDgTIT~~ 277 (451)
+..++++|.||||+..
T Consensus 2 ~~~~~~~d~~~t~~~~ 17 (181)
T PRK08942 2 SMKAIFLDRDGVINVD 17 (181)
T ss_pred CccEEEEECCCCcccC
Confidence 4568999999999653
No 137
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=41.36 E-value=27 Score=31.11 Aligned_cols=37 Identities=14% Similarity=0.268 Sum_probs=26.7
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhc
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFS 426 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~ 426 (451)
.+.+|||..+|++.+.+. ..++|.|.+= ....+.++.
T Consensus 34 ~v~~RP~l~~FL~~l~~~----~ev~i~T~~~-~~ya~~v~~ 70 (159)
T PF03031_consen 34 YVKLRPGLDEFLEELSKH----YEVVIWTSAS-EEYAEPVLD 70 (159)
T ss_dssp EEEE-TTHHHHHHHHHHH----CEEEEE-SS--HHHHHHHHH
T ss_pred eEeeCchHHHHHHHHHHh----ceEEEEEeeh-hhhhhHHHH
Confidence 678999999999999664 7999999863 555555553
No 138
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=40.98 E-value=30 Score=31.49 Aligned_cols=40 Identities=15% Similarity=-0.002 Sum_probs=31.7
Q ss_pred hcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccC
Q 013025 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSG 428 (451)
Q Consensus 384 ~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~ 428 (451)
..+.+|||..+|++.+.+ + .+++|++.+= +...+.++...
T Consensus 55 ~~v~~rPgv~efL~~l~~-~---yel~I~T~~~-~~yA~~vl~~l 94 (156)
T TIGR02250 55 YLTKLRPFLHEFLKEASK-L---YEMHVYTMGT-RAYAQAIAKLI 94 (156)
T ss_pred EEEEECCCHHHHHHHHHh-h---cEEEEEeCCc-HHHHHHHHHHh
Confidence 468899999999999984 4 7999999876 66666666544
No 139
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=40.65 E-value=13 Score=35.90 Aligned_cols=15 Identities=27% Similarity=0.120 Sum_probs=12.7
Q ss_pred eEEEeccCCccchhh
Q 013025 264 LIIFSDFDLTCTIVD 278 (451)
Q Consensus 264 ~~ii~DFDgTIT~~D 278 (451)
.+|++|.|||+...|
T Consensus 4 kli~~DlDGTLl~~~ 18 (272)
T PRK10530 4 RVIALDLDGTLLTPK 18 (272)
T ss_pred cEEEEeCCCceECCC
Confidence 489999999998665
No 140
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=40.42 E-value=12 Score=36.27 Aligned_cols=15 Identities=33% Similarity=0.282 Sum_probs=12.8
Q ss_pred EEEeccCCccchhhc
Q 013025 265 IIFSDFDLTCTIVDS 279 (451)
Q Consensus 265 ~ii~DFDgTIT~~DT 279 (451)
+|++|+|||++..+.
T Consensus 1 li~~DlDGTll~~~~ 15 (256)
T TIGR01486 1 WIFTDLDGTLLDPHG 15 (256)
T ss_pred CEEEcCCCCCcCCCC
Confidence 588999999988774
No 141
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=39.82 E-value=14 Score=34.21 Aligned_cols=11 Identities=27% Similarity=0.350 Sum_probs=0.0
Q ss_pred EEEeccCCccc
Q 013025 265 IIFSDFDLTCT 275 (451)
Q Consensus 265 ~ii~DFDgTIT 275 (451)
++|||+||++|
T Consensus 9 ~~v~d~dGv~t 19 (169)
T TIGR02726 9 LVILDVDGVMT 19 (169)
T ss_pred EEEEeCceeeE
No 142
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=39.65 E-value=13 Score=35.97 Aligned_cols=14 Identities=43% Similarity=0.422 Sum_probs=12.0
Q ss_pred EEEeccCCccchhh
Q 013025 265 IIFSDFDLTCTIVD 278 (451)
Q Consensus 265 ~ii~DFDgTIT~~D 278 (451)
+|++|.|||+...|
T Consensus 1 li~~DlDGTLl~~~ 14 (256)
T TIGR00099 1 LIFIDLDGTLLNDD 14 (256)
T ss_pred CEEEeCCCCCCCCC
Confidence 58899999998765
No 143
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=38.57 E-value=23 Score=41.49 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=13.0
Q ss_pred CCeEEEeccCCccch
Q 013025 262 DRLIIFSDFDLTCTI 276 (451)
Q Consensus 262 ~~~~ii~DFDgTIT~ 276 (451)
.+.+|++|||||++.
T Consensus 590 ~~RLlfLDyDGTLap 604 (934)
T PLN03064 590 NNRLLILGFNATLTE 604 (934)
T ss_pred cceEEEEecCceecc
Confidence 568999999999974
No 144
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=37.21 E-value=38 Score=31.03 Aligned_cols=15 Identities=27% Similarity=-0.130 Sum_probs=12.6
Q ss_pred EEEeccCCccchhhc
Q 013025 265 IIFSDFDLTCTIVDS 279 (451)
Q Consensus 265 ~ii~DFDgTIT~~DT 279 (451)
+|+||.|||||+...
T Consensus 3 ~i~fDktGTLt~~~~ 17 (215)
T PF00702_consen 3 AICFDKTGTLTQGKM 17 (215)
T ss_dssp EEEEECCTTTBESHH
T ss_pred EEEEecCCCcccCeE
Confidence 689999999987643
No 145
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=36.58 E-value=48 Score=30.20 Aligned_cols=30 Identities=10% Similarity=0.158 Sum_probs=26.0
Q ss_pred hcCcccccHHHHHHHHHHcCCCCCcEEEEeccc
Q 013025 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCW 416 (451)
Q Consensus 384 ~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nw 416 (451)
+++.+-||..++++.++++| +++.|+|.+-
T Consensus 23 ~~~~~~pgv~e~L~~Lk~~G---~~l~i~TN~~ 52 (176)
T TIGR00213 23 DNFEFIDGVIDALRELKKMG---YALVLVTNQS 52 (176)
T ss_pred HHeEECCCHHHHHHHHHHCC---CEEEEEeCCc
Confidence 34578899999999999999 9999999654
No 146
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=35.79 E-value=18 Score=32.92 Aligned_cols=13 Identities=38% Similarity=0.327 Sum_probs=9.5
Q ss_pred EEEeccCCccchh
Q 013025 265 IIFSDFDLTCTIV 277 (451)
Q Consensus 265 ~ii~DFDgTIT~~ 277 (451)
+.++|+||||...
T Consensus 2 ia~fD~DgTLi~~ 14 (159)
T PF08645_consen 2 IAFFDLDGTLIKT 14 (159)
T ss_dssp EEEE-SCTTTEE-
T ss_pred EEEEeCCCCccCC
Confidence 6789999999754
No 147
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=35.33 E-value=53 Score=29.94 Aligned_cols=57 Identities=5% Similarity=-0.095 Sum_probs=39.2
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCCc---ccch--hhHHHHHhh
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIHI---QLWK--TEVMKHTMT 444 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~~---~~ck--~~v~~~~~~ 444 (451)
...+-||..++++.++++| +++.|+|.+=....++..+...++. +..| +++..+.+.
T Consensus 41 ~~~~~pgv~e~L~~Lk~~g---~~l~I~Sn~~~~~~~~~~~~~~gl~~~~~~~KP~p~~~~~~l~ 102 (170)
T TIGR01668 41 HNEAYPALRDWIEELKAAG---RKLLIVSNNAGEQRAKAVEKALGIPVLPHAVKPPGCAFRRAHP 102 (170)
T ss_pred CCCcChhHHHHHHHHHHcC---CEEEEEeCCchHHHHHHHHHHcCCEEEcCCCCCChHHHHHHHH
Confidence 4477899999999999999 9999999874356666666555432 3344 344444443
No 148
>PRK10976 putative hydrolase; Provisional
Probab=35.19 E-value=19 Score=34.99 Aligned_cols=15 Identities=33% Similarity=0.275 Sum_probs=12.8
Q ss_pred eEEEeccCCccchhh
Q 013025 264 LIIFSDFDLTCTIVD 278 (451)
Q Consensus 264 ~~ii~DFDgTIT~~D 278 (451)
.+|++|.|||+...|
T Consensus 3 kli~~DlDGTLl~~~ 17 (266)
T PRK10976 3 QVVASDLDGTLLSPD 17 (266)
T ss_pred eEEEEeCCCCCcCCC
Confidence 489999999998765
No 149
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=34.44 E-value=21 Score=34.88 Aligned_cols=15 Identities=27% Similarity=0.144 Sum_probs=12.6
Q ss_pred eEEEeccCCccchhh
Q 013025 264 LIIFSDFDLTCTIVD 278 (451)
Q Consensus 264 ~~ii~DFDgTIT~~D 278 (451)
.++++|.|||+...|
T Consensus 3 kli~~DlDGTLl~~~ 17 (272)
T PRK15126 3 RLAAFDMDGTLLMPD 17 (272)
T ss_pred cEEEEeCCCcCcCCC
Confidence 489999999997654
No 150
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=34.05 E-value=1.8e+02 Score=26.71 Aligned_cols=68 Identities=16% Similarity=0.107 Sum_probs=38.8
Q ss_pred CChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccCCCCCCCCeEEEeccCCcc
Q 013025 195 SSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEVEFFCAQPLAQPTVVPLIKGHNPAGDRLIIFSDFDLTC 274 (451)
Q Consensus 195 ss~~f~~~v~~l~~~ld~~~~~~~~~~~~~l~~iF~~a~~lE~~Fwd~a~~~~~~~~~~~~~~~~~~~~~~ii~DFDgTI 274 (451)
-++.|.+.-+.+...+ .+++++....+...+.-.-+..-=... .... . .+++.++++||||.|
T Consensus 47 Lne~Y~~~k~~L~~al------l~k~e~K~~~K~~KK~~K~~~K~~k~~-~k~~--------~--~~~~r~~VldF~Gdi 109 (155)
T PF08496_consen 47 LNERYEDMKEQLKQAL------LDKKELKAWEKAEKKEEKAKAKAEKKA-AKKA--------K--EPKPRLFVLDFKGDI 109 (155)
T ss_pred HHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHHhhhhhhh-hhcc--------C--CCCCeEEEEecCCCc
Confidence 3456665555444433 356666666666666655544322221 1110 0 257889999999999
Q ss_pred chhhc
Q 013025 275 TIVDS 279 (451)
Q Consensus 275 T~~DT 279 (451)
-.+-+
T Consensus 110 ~A~~v 114 (155)
T PF08496_consen 110 KASEV 114 (155)
T ss_pred cHHHH
Confidence 76554
No 151
>PTZ00174 phosphomannomutase; Provisional
Probab=33.79 E-value=20 Score=34.76 Aligned_cols=15 Identities=33% Similarity=0.204 Sum_probs=12.9
Q ss_pred eEEEeccCCccchhh
Q 013025 264 LIIFSDFDLTCTIVD 278 (451)
Q Consensus 264 ~~ii~DFDgTIT~~D 278 (451)
.+|++|.|||+...|
T Consensus 6 klia~DlDGTLL~~~ 20 (247)
T PTZ00174 6 TILLFDVDGTLTKPR 20 (247)
T ss_pred eEEEEECcCCCcCCC
Confidence 489999999998766
No 152
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=33.41 E-value=18 Score=34.73 Aligned_cols=10 Identities=40% Similarity=0.468 Sum_probs=7.0
Q ss_pred EeccCCccch
Q 013025 267 FSDFDLTCTI 276 (451)
Q Consensus 267 i~DFDgTIT~ 276 (451)
++|||||++.
T Consensus 1 ~lDyDGTL~p 10 (235)
T PF02358_consen 1 FLDYDGTLAP 10 (235)
T ss_dssp EEE-TTTSS-
T ss_pred CcccCCccCC
Confidence 5899999963
No 153
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=33.13 E-value=21 Score=34.65 Aligned_cols=15 Identities=33% Similarity=0.282 Sum_probs=12.6
Q ss_pred eEEEeccCCccchhh
Q 013025 264 LIIFSDFDLTCTIVD 278 (451)
Q Consensus 264 ~~ii~DFDgTIT~~D 278 (451)
.+|++|.|||+...|
T Consensus 4 kli~~DlDGTLl~~~ 18 (270)
T PRK10513 4 KLIAIDMDGTLLLPD 18 (270)
T ss_pred EEEEEecCCcCcCCC
Confidence 489999999997655
No 154
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=33.12 E-value=56 Score=29.80 Aligned_cols=28 Identities=11% Similarity=0.004 Sum_probs=25.1
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecc
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYC 415 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~n 415 (451)
...+.||..++++.++++| +++.|+|.+
T Consensus 27 ~~~~~pgv~e~L~~Lk~~g---~~l~I~Tn~ 54 (181)
T PRK08942 27 EWIPIPGSIEAIARLKQAG---YRVVVATNQ 54 (181)
T ss_pred HeEECCCHHHHHHHHHHCC---CEEEEEeCC
Confidence 5678999999999999999 999999953
No 155
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=32.92 E-value=50 Score=30.61 Aligned_cols=48 Identities=19% Similarity=0.075 Sum_probs=32.6
Q ss_pred HHhhcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCCc
Q 013025 381 KAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIHI 431 (451)
Q Consensus 381 ~~~~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~~ 431 (451)
..++.+.+-|+-.+.|+.++.+| +++.|-|-++...+-+.+|+.-++.
T Consensus 39 ~~g~~v~lypdv~~iL~~L~~~g---v~lavASRt~~P~~A~~~L~~l~i~ 86 (169)
T PF12689_consen 39 SRGEEVSLYPDVPEILQELKERG---VKLAVASRTDEPDWARELLKLLEID 86 (169)
T ss_dssp TT--EE---TTHHHHHHHHHHCT-----EEEEE--S-HHHHHHHHHHTT-C
T ss_pred CCCCEEEeCcCHHHHHHHHHHCC---CEEEEEECCCChHHHHHHHHhcCCC
Confidence 56789999999999999999999 9999999888777888888776555
No 156
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=32.85 E-value=71 Score=28.59 Aligned_cols=48 Identities=8% Similarity=-0.020 Sum_probs=35.3
Q ss_pred HHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCCcc-----cchhhHHHHHhhhh
Q 013025 395 FFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIHIQ-----LWKTEVMKHTMTHY 446 (451)
Q Consensus 395 fl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~~~-----~ck~~v~~~~~~~~ 446 (451)
-++.++++| +.+.|+|.+. .......+.+.|+.. --|++.++++..|+
T Consensus 36 ~i~~Lk~~G---~~i~IvTn~~-~~~~~~~l~~~gi~~~~~~~~~k~~~~~~~~~~~ 88 (154)
T TIGR01670 36 GIRCALKSG---IEVAIITGRK-AKLVEDRCKTLGITHLYQGQSNKLIAFSDILEKL 88 (154)
T ss_pred HHHHHHHCC---CEEEEEECCC-CHHHHHHHHHcCCCEEEecccchHHHHHHHHHHc
Confidence 577788888 9999999988 456677777665432 35777787777664
No 157
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=31.93 E-value=51 Score=36.24 Aligned_cols=56 Identities=11% Similarity=-0.087 Sum_probs=45.0
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhccCCCc------ccchhhHHHHHhh
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSGIHI------QLWKTEVMKHTMT 444 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~~~~~------~~ck~~v~~~~~~ 444 (451)
.-.+|||..++++.++++| +++.|+|.+- +...+.+.++.|+. .-.|.++++++..
T Consensus 403 ~d~l~~~a~e~i~~Lk~~G---i~v~ilSgd~-~~~a~~ia~~lgi~~~~~~~p~~K~~~v~~l~~ 464 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRG---IEPVMLTGDN-RKTAKAVAKELGINVRAEVLPDDKAALIKELQE 464 (562)
T ss_pred cccccHHHHHHHHHHHHcC---CeEEEEcCCC-HHHHHHHHHHcCCcEEccCChHHHHHHHHHHHH
Confidence 4579999999999999999 9999999987 77888888877663 1256777777654
No 158
>PLN02382 probable sucrose-phosphatase
Probab=31.92 E-value=25 Score=37.16 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=14.5
Q ss_pred CCCeEEEeccCCccchh
Q 013025 261 GDRLIIFSDFDLTCTIV 277 (451)
Q Consensus 261 ~~~~~ii~DFDgTIT~~ 277 (451)
+.+++|++|+|||+...
T Consensus 7 ~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 7 SPRLMIVSDLDHTMVDH 23 (413)
T ss_pred CCCEEEEEcCCCcCcCC
Confidence 35889999999999865
No 159
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=31.87 E-value=24 Score=34.56 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=13.8
Q ss_pred CCeEEEeccCCccchhh
Q 013025 262 DRLIIFSDFDLTCTIVD 278 (451)
Q Consensus 262 ~~~~ii~DFDgTIT~~D 278 (451)
+..+|++|.|||+...|
T Consensus 3 ~~kli~~DlDGTLl~~~ 19 (273)
T PRK00192 3 MKLLVFTDLDGTLLDHH 19 (273)
T ss_pred cceEEEEcCcccCcCCC
Confidence 45689999999999743
No 160
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=31.69 E-value=1.4e+02 Score=29.35 Aligned_cols=42 Identities=7% Similarity=-0.006 Sum_probs=32.1
Q ss_pred HHHHhhcCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHh
Q 013025 379 IKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRAS 424 (451)
Q Consensus 379 ~~~~~~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~ 424 (451)
+.+.++...+.+.+++++..+..+| +++..+|..+ ..+....
T Consensus 73 i~~~~~~~lie~~~~~~i~~lq~~~---~~v~alT~~~-~~~~~~t 114 (252)
T PF11019_consen 73 IFELRKMELIESDVPNIINSLQNKG---IPVIALTARG-PNMEDWT 114 (252)
T ss_pred HHhhcceEEcchhHHHHHHHHHHCC---CcEEEEcCCC-hhhHHHH
Confidence 3455667789999999999999988 9999999755 3344333
No 161
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=31.48 E-value=42 Score=29.65 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=25.8
Q ss_pred hcCcccccHHHHHHHHHHcCCCCCcEEEEecc
Q 013025 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYC 415 (451)
Q Consensus 384 ~~v~lr~gf~efl~~~~~~~~~~~~~~IvS~n 415 (451)
....+.||..++++.++++| +++.|+|.+
T Consensus 24 ~~~~~~~g~~~~l~~Lk~~g---~~~~I~Sn~ 52 (147)
T TIGR01656 24 DDWQLRPGAVPALLTLRAAG---YTVVVVTNQ 52 (147)
T ss_pred HHeEEcCChHHHHHHHHHCC---CEEEEEeCC
Confidence 35678999999999999999 999999974
No 162
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=29.67 E-value=28 Score=31.74 Aligned_cols=13 Identities=46% Similarity=0.353 Sum_probs=11.1
Q ss_pred eEEEeccCCccch
Q 013025 264 LIIFSDFDLTCTI 276 (451)
Q Consensus 264 ~~ii~DFDgTIT~ 276 (451)
.++++|.||||+.
T Consensus 2 ~~~~~D~Dgtl~~ 14 (176)
T TIGR00213 2 KAIFLDRDGTINI 14 (176)
T ss_pred CEEEEeCCCCEeC
Confidence 4789999999983
No 163
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=29.47 E-value=22 Score=34.14 Aligned_cols=14 Identities=36% Similarity=0.430 Sum_probs=11.3
Q ss_pred EEEeccCCccchhh
Q 013025 265 IIFSDFDLTCTIVD 278 (451)
Q Consensus 265 ~ii~DFDgTIT~~D 278 (451)
++++|.|||+..++
T Consensus 1 li~~DlDGTLl~~~ 14 (225)
T TIGR02461 1 VIFTDLDGTLLPPG 14 (225)
T ss_pred CEEEeCCCCCcCCC
Confidence 58999999997643
No 164
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=28.57 E-value=4.8e+02 Score=25.61 Aligned_cols=27 Identities=22% Similarity=0.081 Sum_probs=21.8
Q ss_pred EEEeccCCcc--chhhcHHHHHHHHHHhC
Q 013025 265 IIFSDFDLTC--TIVDSSAILAEIAIVTA 291 (451)
Q Consensus 265 ~ii~DFDgTI--T~~DTi~~l~~~~~~~~ 291 (451)
++++|.+||+ |...+-....+++-++.
T Consensus 9 avtfD~~~tLl~~~~~~~~~y~~i~~~~g 37 (237)
T KOG3085|consen 9 AVTFDAGGTLLATLPPVMEVYCEIAEAYG 37 (237)
T ss_pred EEEEeCCCceeecCCccHHHHHHHHHHhC
Confidence 8999999999 47888888888775543
No 165
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=27.88 E-value=95 Score=29.86 Aligned_cols=39 Identities=10% Similarity=-0.038 Sum_probs=31.2
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhcc
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSS 427 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~ 427 (451)
+..+.||..++++.++++| ++++|+|.+- ....+..+++
T Consensus 93 ~~~lypgv~e~L~~Lk~~G---~~l~I~Sn~s-~~~~~~~~~~ 131 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLG---LRLAVYSSGS-VPAQKLLFGH 131 (220)
T ss_pred ccCcCcCHHHHHHHHHHCC---CEEEEEeCCC-HHHHHHHHhh
Confidence 5679999999999999999 9999999764 4455555543
No 166
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=27.09 E-value=29 Score=31.11 Aligned_cols=13 Identities=23% Similarity=0.120 Sum_probs=11.4
Q ss_pred eEEEeccCCccch
Q 013025 264 LIIFSDFDLTCTI 276 (451)
Q Consensus 264 ~~ii~DFDgTIT~ 276 (451)
.++++|.|||++.
T Consensus 2 ~~~~~D~Dgtl~~ 14 (154)
T TIGR01670 2 RLLILDVDGVLTD 14 (154)
T ss_pred eEEEEeCceeEEc
Confidence 3789999999997
No 167
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=26.62 E-value=54 Score=37.10 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=14.1
Q ss_pred CeEEEeccCCccchhhc
Q 013025 263 RLIIFSDFDLTCTIVDS 279 (451)
Q Consensus 263 ~~~ii~DFDgTIT~~DT 279 (451)
+.+|++|+|||++..|+
T Consensus 416 ~KLIfsDLDGTLLd~d~ 432 (694)
T PRK14502 416 KKIVYTDLDGTLLNPLT 432 (694)
T ss_pred eeEEEEECcCCCcCCCC
Confidence 44999999999988654
No 168
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=26.02 E-value=79 Score=26.59 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=36.1
Q ss_pred CccHhHHHH--HHHHH----HHHHHHhcCCcchhccCCHHHHHHHHHhccHHHHH
Q 013025 312 RNTWGLLSK--QYTEE----YEQCIESFMPSEKVENFNYETLHKALEQLSHFEKR 360 (451)
Q Consensus 312 ~~~w~~~~~--~Y~~~----y~~~~~~~~p~~~~~~~~~~~e~~~l~~l~~vE~~ 360 (451)
..+|.++.. +=|++ |++++++..|....--+++++..+|+++|.++-+-
T Consensus 16 sRT~~DYesv~e~megiCk~yEe~Lkk~nPs~~~ITYDIsqlfeFiD~L~DlS~l 70 (104)
T KOG1766|consen 16 SRTWGDYESVTECMEGICKMYEEHLKKKNPSAPPITYDISQLFEFIDDLADLSML 70 (104)
T ss_pred cccccchHhHHHHHHHHHHHHHHHHHhcCCCCCCcceeHHHHHHHHHHHhhhhhh
Confidence 457877653 33444 88888888886654448999999999999977654
No 169
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=25.71 E-value=1.2e+02 Score=29.09 Aligned_cols=44 Identities=11% Similarity=0.014 Sum_probs=33.9
Q ss_pred cCcccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHH--HhhccCCCcc
Q 013025 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIR--ASFSSGIHIQ 432 (451)
Q Consensus 385 ~v~lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~--~~L~~~~~~~ 432 (451)
...+-||-.+++++++++| +++.|||-+= +...+ ..|++.|+..
T Consensus 22 ~~~~~pga~e~L~~L~~~G---~~~~ivTN~~-~~~~~~~~~L~~~gl~~ 67 (242)
T TIGR01459 22 GNHTYPGAVQNLNKIIAQG---KPVYFVSNSP-RNIFSLHKTLKSLGINA 67 (242)
T ss_pred CCccCccHHHHHHHHHHCC---CEEEEEeCCC-CChHHHHHHHHHCCCCc
Confidence 4567899999999999999 9999999863 55544 6676666543
No 170
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=25.65 E-value=78 Score=31.98 Aligned_cols=36 Identities=14% Similarity=0.024 Sum_probs=32.0
Q ss_pred ccccHHHHHHHHHHcCCCCCcEEEEecccCHHHHHHhhcc
Q 013025 388 LQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSS 427 (451)
Q Consensus 388 lr~gf~efl~~~~~~~~~~~~~~IvS~nws~~fI~~~L~~ 427 (451)
+-+|+.++++.+.++| +.+.|+|-|- ...+..+|.+
T Consensus 32 ~~~~~~e~L~~L~~~G---i~lai~S~n~-~~~a~~~l~~ 67 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQG---FLLALASKND-EDDAKKVFER 67 (320)
T ss_pred cHHHHHHHHHHHHhCC---CEEEEEcCCC-HHHHHHHHHh
Confidence 3789999999999999 9999999997 6788888876
No 171
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=24.75 E-value=38 Score=34.40 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=13.4
Q ss_pred eEEEeccCCccchhhc
Q 013025 264 LIIFSDFDLTCTIVDS 279 (451)
Q Consensus 264 ~~ii~DFDgTIT~~DT 279 (451)
.+|++|.|||+..+|+
T Consensus 2 KLIftDLDGTLLd~~~ 17 (302)
T PRK12702 2 RLVLSSLDGSLLDLEF 17 (302)
T ss_pred cEEEEeCCCCCcCCCC
Confidence 4899999999988555
No 172
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=23.53 E-value=40 Score=30.74 Aligned_cols=16 Identities=25% Similarity=0.015 Sum_probs=13.2
Q ss_pred eEEEeccCCccchhhc
Q 013025 264 LIIFSDFDLTCTIVDS 279 (451)
Q Consensus 264 ~~ii~DFDgTIT~~DT 279 (451)
.++++|+|||+|..+.
T Consensus 26 ~~vv~D~Dgtl~~~~~ 41 (170)
T TIGR01668 26 KGVVLDKDNTLVYPDH 41 (170)
T ss_pred CEEEEecCCccccCCC
Confidence 4799999999997653
Done!