Query 013026
Match_columns 451
No_of_seqs 201 out of 592
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:47:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013026.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013026hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1362 Choline transporter-li 100.0 4.1E-47 8.8E-52 406.1 23.2 255 196-451 150-453 (577)
2 PF04515 Choline_transpo: Plas 100.0 1.2E-43 2.6E-48 358.1 16.8 199 253-451 2-235 (334)
3 KOG1924 RhoA GTPase effector D 98.4 2.2E-07 4.8E-12 101.5 4.6 22 273-294 795-816 (1102)
4 KOG1924 RhoA GTPase effector D 98.4 4.1E-07 8.8E-12 99.5 5.5 14 24-37 488-501 (1102)
5 PRK15319 AIDA autotransporter- 96.5 0.0025 5.4E-08 76.3 5.1 7 354-360 1845-1851(2039)
6 KOG4672 Uncharacterized conser 96.5 0.011 2.4E-07 61.5 8.7 6 73-78 308-313 (487)
7 PHA03247 large tegument protei 95.9 0.012 2.5E-07 72.5 6.3 17 271-287 3121-3137(3151)
8 KOG4672 Uncharacterized conser 95.4 0.048 1E-06 57.0 7.6 10 60-69 287-296 (487)
9 PF11081 DUF2890: Protein of u 95.3 0.052 1.1E-06 51.5 7.0 13 142-154 121-133 (187)
10 PRK15313 autotransport protein 93.7 0.11 2.4E-06 59.6 6.0 7 154-160 642-648 (955)
11 KOG4849 mRNA cleavage factor I 93.6 0.098 2.1E-06 53.8 4.9 14 64-77 217-230 (498)
12 COG5178 PRP8 U5 snRNP spliceos 93.6 0.047 1E-06 63.1 2.9 13 126-138 21-33 (2365)
13 KOG0559 Dihydrolipoamide succi 92.0 0.52 1.1E-05 48.9 7.6 17 37-53 123-139 (457)
14 PRK09752 adhesin; Provisional 91.5 0.17 3.8E-06 59.2 3.9 7 50-56 852-858 (1250)
15 COG5178 PRP8 U5 snRNP spliceos 90.4 0.22 4.7E-06 57.9 3.4 11 213-223 123-133 (2365)
16 KOG1922 Rho GTPase effector BN 90.4 0.75 1.6E-05 52.9 7.8 25 71-96 299-323 (833)
17 KOG3895 Synaptic vesicle prote 89.7 0.67 1.5E-05 48.1 5.9 24 90-113 420-443 (488)
18 KOG1925 Rac1 GTPase effector F 88.6 0.86 1.9E-05 49.2 6.0 33 4-37 148-180 (817)
19 KOG1830 Wiskott Aldrich syndro 87.6 1 2.3E-05 47.5 5.8 16 88-103 303-318 (518)
20 TIGR00927 2A1904 K+-dependent 87.5 6 0.00013 46.2 12.1 17 147-163 931-947 (1096)
21 PF09026 CENP-B_dimeris: Centr 87.1 0.18 4E-06 42.8 0.0 11 10-20 10-20 (101)
22 KOG0391 SNF2 family DNA-depend 86.8 1.1 2.3E-05 53.0 5.7 21 98-118 1895-1915(1958)
23 KOG2236 Uncharacterized conser 86.7 2.1 4.6E-05 45.7 7.5 17 60-76 380-397 (483)
24 KOG3397 Acetyltransferases [Ge 86.5 0.6 1.3E-05 44.1 3.0 11 66-76 154-164 (225)
25 PF06003 SMN: Survival motor n 83.6 0.36 7.8E-06 48.3 0.1 10 124-133 207-216 (264)
26 PHA03211 serine/threonine kina 83.3 1.1 2.3E-05 48.2 3.6 22 94-115 35-56 (461)
27 PF12238 MSA-2c: Merozoite sur 82.3 2.8 6.1E-05 40.5 5.6 29 24-52 80-109 (205)
28 KOG4590 Signal transduction pr 82.3 2.1 4.6E-05 45.4 5.2 9 267-275 382-390 (409)
29 KOG2391 Vacuolar sorting prote 81.0 2.5 5.4E-05 43.7 5.0 25 43-67 101-126 (365)
30 PRK14948 DNA polymerase III su 80.9 3.9 8.4E-05 45.8 7.0 9 76-84 505-513 (620)
31 PF12238 MSA-2c: Merozoite sur 80.9 3.5 7.6E-05 39.9 5.7 13 22-34 93-105 (205)
32 PF05750 Rubella_Capsid: Rubel 80.9 1.3 2.9E-05 42.1 2.8 55 94-148 80-144 (300)
33 COG5373 Predicted membrane pro 80.3 92 0.002 36.2 17.1 13 253-265 226-238 (931)
34 PRK13335 superantigen-like pro 80.0 2.6 5.7E-05 43.4 4.8 6 42-47 85-90 (356)
35 PRK14948 DNA polymerase III su 78.8 3.6 7.7E-05 46.1 5.9 14 44-57 501-514 (620)
36 KOG1922 Rho GTPase effector BN 78.4 6.6 0.00014 45.3 8.0 8 68-75 311-318 (833)
37 KOG1830 Wiskott Aldrich syndro 76.4 12 0.00026 39.9 8.4 17 91-107 301-317 (518)
38 KOG1925 Rac1 GTPase effector F 76.4 2.9 6.3E-05 45.3 4.0 17 73-89 208-224 (817)
39 KOG4849 mRNA cleavage factor I 75.9 4.2 9.2E-05 42.2 4.9 8 73-80 244-251 (498)
40 PF04695 Pex14_N: Peroxisomal 75.8 0.88 1.9E-05 41.0 0.0 9 144-152 106-114 (136)
41 PF05297 Herpes_LMP1: Herpesvi 75.7 0.88 1.9E-05 46.0 0.0 18 248-265 102-119 (381)
42 PRK14950 DNA polymerase III su 75.1 4.5 9.7E-05 44.9 5.3 12 145-156 467-478 (585)
43 PF15195 TMEM210: TMEM210 fami 75.1 4.6 0.0001 34.5 4.1 52 4-75 43-94 (116)
44 PF09026 CENP-B_dimeris: Centr 74.7 0.97 2.1E-05 38.5 0.0 14 10-23 14-27 (101)
45 PF06570 DUF1129: Protein of u 73.1 88 0.0019 29.9 14.3 21 54-75 37-57 (206)
46 KOG2322 N-methyl-D-aspartate r 72.6 32 0.00069 34.1 9.8 14 142-155 44-57 (237)
47 PF00558 Vpu: Vpu protein; In 71.8 2 4.3E-05 35.6 1.2 26 7-32 42-67 (81)
48 KOG4307 RNA binding protein RB 71.5 15 0.00032 41.5 8.0 30 39-68 136-165 (944)
49 PF02993 MCPVI: Minor capsid p 71.5 1.3 2.8E-05 43.7 0.0 10 8-17 98-107 (238)
50 KOG0917 Uncharacterized conser 70.4 10 0.00022 38.3 5.9 6 122-127 284-289 (338)
51 TIGR00927 2A1904 K+-dependent 70.0 44 0.00096 39.4 11.6 25 250-275 584-608 (1096)
52 PF10446 DUF2457: Protein of u 68.3 12 0.00026 40.1 6.2 8 85-92 283-290 (458)
53 PRK13855 type IV secretion sys 68.1 8.2 0.00018 40.6 5.0 11 72-82 58-68 (376)
54 KOG2675 Adenylate cyclase-asso 67.8 11 0.00023 40.4 5.8 15 131-145 320-334 (480)
55 PRK13855 type IV secretion sys 67.0 15 0.00032 38.7 6.6 14 281-294 221-234 (376)
56 PLN02983 biotin carboxyl carri 67.0 11 0.00024 37.9 5.4 11 43-53 114-124 (274)
57 KOG3655 Drebrins and related a 66.3 12 0.00025 40.5 5.7 14 2-15 238-251 (484)
58 PF03353 Lin-8: Ras-mediated v 64.9 18 0.00039 36.8 6.8 14 142-155 269-282 (313)
59 KOG4090 Uncharacterized conser 64.3 14 0.0003 34.2 5.1 11 84-94 4-14 (157)
60 PHA03211 serine/threonine kina 64.0 6.1 0.00013 42.4 3.3 7 378-384 346-352 (461)
61 PRK03427 cell division protein 63.2 25 0.00054 36.5 7.3 21 38-58 62-82 (333)
62 PHA03378 EBNA-3B; Provisional 62.1 15 0.00033 41.4 5.8 17 51-67 667-683 (991)
63 KOG0132 RNA polymerase II C-te 62.1 22 0.00048 40.6 7.1 7 13-19 524-530 (894)
64 PF10529 Hist_rich_Ca-bd: Hist 61.7 3.5 7.7E-05 23.6 0.5 11 20-30 4-14 (15)
65 KOG3130 Uncharacterized conser 59.2 5.5 0.00012 42.0 1.8 25 32-56 289-313 (514)
66 COG3147 DedD Uncharacterized p 58.9 54 0.0012 32.1 8.3 16 21-36 32-47 (226)
67 KOG3837 Uncharacterized conser 58.9 12 0.00027 39.8 4.3 21 111-131 177-197 (523)
68 TIGR00859 ENaC sodium channel 58.8 13 0.00028 41.5 4.8 18 87-104 547-564 (595)
69 PF10446 DUF2457: Protein of u 58.8 5.7 0.00012 42.5 1.9 13 54-66 100-112 (458)
70 KOG2140 Uncharacterized conser 58.2 3.9 8.4E-05 44.8 0.5 26 11-36 412-437 (739)
71 PTZ00438 gamete antigen 27/25- 57.4 4.7 0.0001 40.4 0.9 29 9-42 102-130 (374)
72 PRK06975 bifunctional uroporph 56.9 38 0.00083 38.3 8.1 23 270-292 435-457 (656)
73 PRK10649 hypothetical protein; 56.1 2.4E+02 0.0052 31.5 14.0 19 204-222 48-66 (577)
74 PF15451 DUF4632: Domain of un 55.3 4.6 0.0001 31.7 0.4 20 15-37 6-25 (71)
75 KOG2500 Uncharacterized conser 53.1 27 0.00059 34.4 5.3 7 32-38 151-157 (253)
76 TIGR01299 synapt_SV2 synaptic 53.0 4.1E+02 0.009 30.6 16.9 20 203-222 213-232 (742)
77 KOG3034 Isoamyl acetate-hydrol 52.5 8.1 0.00018 39.3 1.7 61 8-76 22-86 (308)
78 PRK14971 DNA polymerase III su 52.1 33 0.00071 38.5 6.6 6 211-216 505-510 (614)
79 KOG0559 Dihydrolipoamide succi 51.9 31 0.00067 36.3 5.8 11 123-133 208-218 (457)
80 PF09849 DUF2076: Uncharacteri 50.6 22 0.00048 35.4 4.4 10 166-175 151-160 (247)
81 KOG0307 Vesicle coat complex C 50.4 50 0.0011 39.1 7.7 7 131-137 928-934 (1049)
82 KOG3895 Synaptic vesicle prote 50.0 39 0.00084 35.6 6.1 9 129-137 457-465 (488)
83 PTZ00429 beta-adaptin; Provisi 49.9 13 0.00027 42.8 2.9 17 60-76 664-680 (746)
84 PRK13732 single-stranded DNA-b 49.5 23 0.0005 33.4 4.2 14 32-45 71-85 (175)
85 KOG0639 Transducin-like enhanc 48.7 63 0.0014 35.5 7.6 17 26-42 210-226 (705)
86 PF01698 FLO_LFY: Floricaula / 48.5 5.8 0.00013 41.7 0.0 14 61-75 4-17 (386)
87 PF12526 DUF3729: Protein of u 48.1 43 0.00093 29.6 5.3 17 117-133 84-100 (113)
88 PF07462 MSP1_C: Merozoite sur 47.9 33 0.00072 37.8 5.5 10 66-75 252-261 (574)
89 PF15387 DUF4611: Domain of un 47.8 7.2 0.00016 33.1 0.4 9 6-14 48-56 (96)
90 KOG2322 N-methyl-D-aspartate r 47.3 1.8E+02 0.004 28.9 10.1 23 139-161 37-59 (237)
91 KOG1955 Ral-GTPase effector RA 47.1 31 0.00068 37.7 5.1 11 93-103 491-501 (737)
92 KOG4592 Uncharacterized conser 46.9 22 0.00048 39.6 4.0 18 76-93 100-117 (728)
93 COG5137 Histone chaperone invo 46.8 8.3 0.00018 37.7 0.7 18 20-37 186-203 (279)
94 KOG2399 K+-dependent Na+:Ca2+ 46.7 4.8E+02 0.01 29.5 15.8 15 147-161 379-393 (605)
95 PLN03029 type-a response regul 46.5 10 0.00022 36.4 1.4 7 142-148 212-218 (222)
96 PF11081 DUF2890: Protein of u 46.5 39 0.00084 32.4 5.1 17 137-153 113-129 (187)
97 COG3115 ZipA Cell division pro 46.4 59 0.0013 33.4 6.7 7 66-72 85-91 (324)
98 PF14017 DUF4233: Protein of u 46.1 2E+02 0.0044 25.0 9.3 27 251-278 77-103 (107)
99 cd06165 Sortase_A_1 Sortase A 45.9 19 0.00041 31.5 2.9 55 31-85 24-78 (127)
100 KOG2391 Vacuolar sorting prote 45.6 46 0.00099 34.7 5.8 15 120-134 167-181 (365)
101 KOG4307 RNA binding protein RB 45.6 51 0.0011 37.5 6.5 14 62-75 181-194 (944)
102 TIGR01076 sortase_fam LPXTG-si 45.5 20 0.00043 32.0 2.9 54 32-85 22-78 (136)
103 KOG1307 K+-dependent Ca2+/Na+ 45.4 10 0.00022 41.1 1.1 11 149-159 424-434 (588)
104 PF01698 FLO_LFY: Floricaula / 45.1 7.1 0.00015 41.0 0.0 7 343-349 262-268 (386)
105 PF12794 MscS_TM: Mechanosensi 45.0 7.9 0.00017 40.1 0.3 12 8-19 260-271 (340)
106 KOG1307 K+-dependent Ca2+/Na+ 44.6 7.2 0.00016 42.1 -0.0 18 142-159 421-440 (588)
107 PF03153 TFIIA: Transcription 43.9 8.9 0.00019 39.9 0.5 14 37-50 305-318 (375)
108 PF15470 DUF4637: Domain of un 43.7 16 0.00035 33.5 2.0 20 54-73 71-90 (173)
109 PF04625 DEC-1_N: DEC-1 protei 42.9 46 0.001 34.4 5.3 11 367-377 332-342 (407)
110 PF03348 Serinc: Serine incorp 42.4 11 0.00024 40.5 0.9 16 22-37 330-345 (429)
111 KOG1945 Protein phosphatase 1 42.4 18 0.00039 37.8 2.4 6 61-66 21-26 (377)
112 PRK10263 DNA translocase FtsK; 42.3 7.7E+02 0.017 30.7 15.9 23 142-164 19-41 (1355)
113 cd06166 Sortase_D_5 Sortase D 41.9 24 0.00052 31.0 2.8 54 32-85 25-79 (126)
114 KOG2418 Microtubule-associated 41.8 82 0.0018 33.2 6.9 15 75-89 173-187 (448)
115 PRK12766 50S ribosomal protein 41.6 11 0.00023 37.3 0.6 7 15-21 62-68 (232)
116 PF14110 DUF4282: Domain of un 41.5 1.4E+02 0.0029 24.9 7.2 36 252-287 46-82 (90)
117 PF10152 DUF2360: Predicted co 41.4 74 0.0016 29.1 6.1 10 146-155 112-121 (148)
118 PRK13729 conjugal transfer pil 41.1 28 0.0006 37.9 3.6 6 8-13 81-86 (475)
119 TIGR01129 secD protein-export 40.8 3.6E+02 0.0078 28.7 11.9 27 197-223 249-275 (397)
120 PF15470 DUF4637: Domain of un 40.7 12 0.00026 34.3 0.8 10 10-19 21-30 (173)
121 COG2194 Predicted membrane-ass 40.3 5.7E+02 0.012 28.6 15.0 33 198-230 45-77 (555)
122 PF05399 EVI2A: Ectropic viral 40.1 1.3E+02 0.0028 29.5 7.6 10 151-160 138-147 (227)
123 KOG2677 Stoned B synaptic vesi 39.3 51 0.0011 37.2 5.3 71 80-150 15-135 (922)
124 PF12868 DUF3824: Domain of un 39.2 91 0.002 28.4 6.2 20 9-28 28-47 (137)
125 KOG1985 Vesicle coat complex C 38.9 77 0.0017 36.7 6.8 6 63-68 47-52 (887)
126 PF07462 MSP1_C: Merozoite sur 38.6 47 0.001 36.7 4.9 8 10-17 136-143 (574)
127 PF02724 CDC45: CDC45-like pro 38.1 17 0.00036 40.9 1.6 15 276-290 446-460 (622)
128 KOG2568 Predicted membrane pro 37.7 6.1E+02 0.013 28.2 15.2 33 258-290 345-377 (518)
129 KOG3088 Secretory carrier memb 37.3 8.9 0.00019 38.9 -0.7 29 8-36 65-93 (313)
130 PF05858 BIV_Env: Bovine immun 36.5 10 0.00022 40.3 -0.4 34 10-43 3-38 (548)
131 PRK14849 putative lipoprotein/ 36.5 27 0.00059 43.5 3.0 7 154-160 1488-1494(1806)
132 KOG2652 RNA polymerase II tran 35.9 20 0.00042 37.3 1.5 9 40-48 289-297 (348)
133 KOG4317 Predicted Zn-finger pr 35.5 17 0.00038 37.3 1.0 30 7-37 71-109 (383)
134 PRK14963 DNA polymerase III su 35.5 36 0.00077 37.3 3.5 11 139-149 424-434 (504)
135 cd05827 Sortase_C_3 Sortase C 35.4 34 0.00073 30.2 2.8 55 31-85 24-81 (131)
136 cd00004 Sortase Sortases are c 35.2 31 0.00068 30.1 2.5 55 31-85 24-79 (128)
137 KOG3397 Acetyltransferases [Ge 35.2 36 0.00078 32.5 3.0 26 84-109 158-184 (225)
138 KOG2153 Protein involved in th 34.0 16 0.00035 40.9 0.6 20 7-26 137-156 (704)
139 PF08688 ASD1: Apx/Shroom doma 33.4 32 0.0007 32.8 2.4 30 49-79 40-72 (182)
140 KOG2568 Predicted membrane pro 33.4 7.1E+02 0.015 27.7 14.4 43 195-237 203-245 (518)
141 KOG4425 Uncharacterized conser 33.3 40 0.00087 36.7 3.3 16 418-433 755-770 (900)
142 PHA03282 envelope glycoprotein 33.2 81 0.0017 34.4 5.5 48 33-80 107-156 (540)
143 PRK14952 DNA polymerase III su 33.2 44 0.00095 37.4 3.8 6 148-153 438-443 (584)
144 KOG1546 Metacaspase involved i 33.1 38 0.00083 35.2 3.0 6 370-375 307-312 (362)
145 PF12273 RCR: Chitin synthesis 32.8 40 0.00086 29.9 2.8 10 267-276 19-28 (130)
146 PRK14954 DNA polymerase III su 32.6 72 0.0016 35.9 5.4 9 142-150 463-471 (620)
147 PLN03132 NADH dehydrogenase (u 32.5 32 0.0007 37.3 2.5 55 347-405 312-374 (461)
148 PLN03029 type-a response regul 31.8 39 0.00084 32.4 2.7 6 75-80 103-108 (222)
149 PF03353 Lin-8: Ras-mediated v 31.7 62 0.0013 32.9 4.3 6 32-37 160-165 (313)
150 PF15471 TMEM171: Transmembran 31.1 1.4E+02 0.003 30.4 6.4 17 74-90 205-221 (319)
151 PF03303 WTF: WTF protein; In 30.9 5.5E+02 0.012 25.6 15.2 41 196-242 125-165 (247)
152 PRK07764 DNA polymerase III su 30.8 93 0.002 36.3 6.0 9 145-153 512-520 (824)
153 KOG3832 Predicted amino acid t 30.5 28 0.00061 34.2 1.5 13 68-80 115-127 (319)
154 PRK07764 DNA polymerase III su 30.4 83 0.0018 36.7 5.5 12 141-152 512-523 (824)
155 KOG0943 Predicted ubiquitin-pr 30.3 18 0.00039 43.3 0.2 17 275-291 2115-2131(3015)
156 KOG4167 Predicted DNA-binding 30.2 34 0.00074 39.0 2.3 16 9-24 680-695 (907)
157 KOG0577 Serine/threonine prote 29.3 1.3E+02 0.0027 34.3 6.3 12 26-37 328-339 (948)
158 PRK12766 50S ribosomal protein 27.8 23 0.0005 35.0 0.4 26 9-34 60-85 (232)
159 KOG0772 Uncharacterized conser 27.8 41 0.00088 37.0 2.3 12 38-49 168-179 (641)
160 KOG3064 RNA-binding nuclear pr 27.8 26 0.00057 35.2 0.8 8 27-34 209-216 (303)
161 KOG2141 Protein involved in hi 27.5 61 0.0013 37.0 3.6 13 410-422 652-664 (822)
162 PF12805 FUSC-like: FUSC-like 27.4 4.3E+02 0.0093 26.3 9.5 15 301-315 76-90 (284)
163 KOG2927 Membrane component of 27.2 72 0.0016 33.5 3.9 34 347-380 245-280 (372)
164 KOG2654 Uncharacterized conser 26.9 57 0.0012 34.8 3.1 6 142-147 173-178 (461)
165 KOG0825 PHD Zn-finger protein 26.4 35 0.00076 39.2 1.6 7 73-79 922-928 (1134)
166 PF15345 TMEM51: Transmembrane 26.3 78 0.0017 31.3 3.8 11 38-48 124-134 (233)
167 PLN03078 Putative tRNA pseudou 26.1 36 0.00078 37.4 1.5 10 151-160 363-372 (513)
168 PLN02983 biotin carboxyl carri 25.7 1.8E+02 0.004 29.5 6.3 9 79-87 133-141 (274)
169 PF03115 Astro_capsid: Astrovi 25.6 23 0.0005 40.8 0.0 7 142-148 744-750 (787)
170 KOG4425 Uncharacterized conser 25.5 54 0.0012 35.8 2.6 10 88-97 59-68 (900)
171 PF11710 Git3: G protein-coupl 25.1 6E+02 0.013 24.2 9.8 20 142-161 32-51 (201)
172 PF03699 UPF0182: Uncharacteri 25.1 3.8E+02 0.0082 31.3 9.4 9 381-389 501-509 (774)
173 PHA03356 tegument protein UL11 25.1 1.6E+02 0.0034 24.8 4.7 6 77-82 52-57 (93)
174 PF00873 ACR_tran: AcrB/AcrD/A 25.1 5.5E+02 0.012 30.5 11.2 27 190-216 325-351 (1021)
175 TIGR01478 STEVOR variant surfa 25.0 72 0.0016 32.5 3.3 24 252-275 263-286 (295)
176 PTZ00370 STEVOR; Provisional 24.9 70 0.0015 32.7 3.2 25 252-276 259-283 (296)
177 KOG4270 GTPase-activator prote 24.9 2.1E+02 0.0046 32.1 7.2 6 83-88 465-470 (577)
178 KOG2546 Abl interactor ABI-1, 24.8 82 0.0018 33.9 3.8 8 69-76 345-352 (483)
179 PF11712 Vma12: Endoplasmic re 24.7 5.1E+02 0.011 23.2 9.1 29 144-172 71-99 (142)
180 TIGR00918 2A060602 The Eukaryo 24.7 1.3E+03 0.028 28.3 14.1 14 252-265 1019-1032(1145)
181 TIGR00915 2A0602 The (Largely 24.6 5.4E+02 0.012 30.9 11.0 16 198-213 340-355 (1044)
182 cd09245 BRO1_UmRIM23-like Prot 24.5 22 0.00048 38.0 -0.4 23 69-91 384-406 (413)
183 KOG1984 Vesicle coat complex C 24.4 1.5E+02 0.0032 34.8 5.9 13 57-69 20-32 (1007)
184 KOG1996 mRNA splicing factor [ 24.2 34 0.00074 35.0 0.9 9 215-223 276-284 (378)
185 KOG1053 Glutamate-gated NMDA-t 24.1 1E+02 0.0022 36.3 4.6 9 57-65 948-956 (1258)
186 PHA03171 UL37 tegument protein 24.0 25 0.00055 37.3 -0.1 15 377-391 452-466 (499)
187 cd05830 Sortase_D_5 Sortase D 23.7 74 0.0016 28.3 2.9 55 30-85 25-80 (137)
188 KOG3294 WW domain binding prot 23.6 1.2E+02 0.0027 30.2 4.5 7 67-73 145-151 (261)
189 KOG2141 Protein involved in hi 23.5 44 0.00094 38.1 1.6 6 356-361 567-572 (822)
190 PF03176 MMPL: MMPL family; I 23.5 7.6E+02 0.016 24.7 11.7 20 288-307 243-262 (333)
191 COG1295 Rbn Ribonuclease BN fa 23.3 6.9E+02 0.015 25.3 10.2 10 213-222 205-214 (303)
192 PRK12911 bifunctional preprote 23.3 8.3E+02 0.018 30.4 11.9 35 200-234 913-947 (1403)
193 PRK12438 hypothetical protein; 23.3 1.2E+03 0.027 28.0 13.2 174 125-310 1-230 (991)
194 PF05568 ASFV_J13L: African sw 23.1 1.1E+02 0.0024 28.3 3.9 42 252-294 35-76 (189)
195 KOG1174 Anaphase-promoting com 23.1 28 0.00061 37.5 0.1 31 3-34 506-536 (564)
196 TIGR00917 2A060601 Niemann-Pic 23.0 7.9E+02 0.017 30.2 12.0 14 252-265 1103-1116(1204)
197 KOG1289 Amino acid transporter 22.9 38 0.00083 37.4 1.0 28 270-297 263-290 (550)
198 PF15387 DUF4611: Domain of un 22.6 35 0.00075 29.1 0.5 6 14-19 51-56 (96)
199 PF14816 FAM178: Family of unk 22.4 24 0.00052 37.3 -0.6 10 53-62 78-87 (377)
200 PF13796 Sensor: Putative sens 22.3 6.1E+02 0.013 23.2 10.1 13 141-153 85-97 (181)
201 KOG1473 Nucleosome remodeling 22.2 40 0.00088 40.2 1.1 33 139-172 210-242 (1414)
202 KOG2548 SWAP mRNA splicing reg 22.2 32 0.00069 37.7 0.3 15 129-143 350-364 (653)
203 PRK12933 secD preprotein trans 22.0 8E+02 0.017 27.8 11.0 15 68-82 351-365 (604)
204 KOG2023 Nuclear transport rece 21.6 34 0.00073 38.8 0.3 21 191-211 576-596 (885)
205 PF01056 Myc_N: Myc amino-term 21.6 31 0.00067 35.9 0.0 10 34-43 242-251 (329)
206 TIGR00934 2a38euk potassium up 21.4 1.4E+03 0.03 27.0 16.7 26 369-394 699-724 (800)
207 TIGR01667 YCCS_YHJK integral m 21.3 6.9E+02 0.015 28.7 10.6 12 303-314 136-147 (701)
208 PF12811 BaxI_1: Bax inhibitor 21.3 8.7E+02 0.019 24.7 22.7 18 328-345 247-266 (274)
209 TIGR00601 rad23 UV excision re 21.2 2.1E+02 0.0046 30.3 6.1 10 287-296 262-271 (378)
210 KOG0291 WD40-repeat-containing 20.9 51 0.0011 37.8 1.5 12 67-78 299-311 (893)
211 KOG4264 Nucleo-cytoplasmic pro 20.6 1.6E+02 0.0034 32.7 5.0 12 6-17 311-322 (694)
212 TIGR00145 FTR1 family protein. 20.5 7.3E+02 0.016 25.2 9.6 41 200-241 18-58 (283)
213 PF03348 Serinc: Serine incorp 20.4 45 0.00098 35.8 0.9 19 18-36 329-347 (429)
214 PF08595 RXT2_N: RXT2-like, N- 20.3 27 0.00058 32.2 -0.7 7 47-53 84-90 (149)
215 TIGR03593 yidC_nterm membrane 20.3 1.3E+02 0.0029 31.0 4.4 15 413-427 347-361 (366)
216 KOG0341 DEAD-box protein abstr 20.2 53 0.0012 35.2 1.4 21 9-29 3-23 (610)
217 KOG0127 Nucleolar protein fibr 20.2 53 0.0012 36.3 1.4 6 272-277 425-430 (678)
218 PF00892 EamA: EamA-like trans 20.0 4.8E+02 0.01 21.1 9.7 58 205-264 64-123 (126)
No 1
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.1e-47 Score=406.08 Aligned_cols=255 Identities=21% Similarity=0.391 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhheee-ec-----CC------------------cc
Q 013026 196 PQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICF-QK-----PA------------------TD 251 (451)
Q Consensus 196 ~ll~~~~~vs~vlS~~wL~llr~~a~~lV~~~ii~~~il~l~~~i~~~~~-~~-----~~------------------~~ 251 (451)
..+...+.+++++|++|+.++|++++.++|+.+++.+++ ++.+++..++ +. +. .+
T Consensus 150 ~~i~~~~~~~l~~s~i~~~~lr~~~~~l~~~~~~~~l~~-l~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~~l~ 228 (577)
T KOG1362|consen 150 YTILSLLGIALVLSLIFTKLLRFLAAILPWILIILVLVG-LLSGIWFCWFLYAILRNTKVTIGFTSSLFVAVGNQLTLLD 228 (577)
T ss_pred HHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhccccceeecchHHHHHHHhHHHHHH
Confidence 345678899999999999999999999998887774443 4444443221 10 00 11
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhhcc--c-------
Q 013026 252 GVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGAL--N------- 322 (451)
Q Consensus 252 ~~gIv~lifaii~~ly~~~vr~RI~fA~aiLk~A~~~i~~~p~l~lv~~~~~iv~~~~~~~W~~~~iG~~--~------- 322 (451)
..||+++++.++.++|.+++|+||++|++++|+|++++.+.|+++++|+.+.++.++|+++|+...++.. +
T Consensus 229 ~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~~~~l~t~~~~~~gg~ 308 (577)
T KOG1362|consen 229 AVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFVALFLVTSGPNSEGGC 308 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCc
Confidence 3689999999988889989999999999999999999999999999999999999999999998765432 1
Q ss_pred -cccCch----hHHHHHHH-HHHHHHHHhhccceeeeceeEEEEecCCC-----chHHHHHHHHHhhcchhhhhhhhHHH
Q 013026 323 -FYFPPL----IIIALVLS-LAWTTEVMRNVVNLTVCRVISLYYILGMQ-----SSTQFCFQRALTQNLGSACLGSLFVP 391 (451)
Q Consensus 323 -~~~~~~----~i~~~lfs-l~Wt~~vi~nv~~vTIAGvva~WYF~~~~-----~pv~~Sf~rA~t~sfGSIcfGSLIVa 391 (451)
+.|.+. ..+++++. ++|++||++|++|+++||++++|||++++ .|++.||+||++||+||||+|||+++
T Consensus 309 ~~~~~~~~~~~~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~~~iP~~p~~~al~ra~~yhlGSi~~GSliv~ 388 (577)
T KOG1362|consen 309 ACTYSGGSLRILFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDKQDIPSSPLFSALRRALRYHLGSICFGSLLVA 388 (577)
T ss_pred eeeccCCcchhHhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCCCCCCCchHHHHHHHHHHHhccchhhhhhHHH
Confidence 223321 23455555 99999999999999999999999998653 68999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc-cC-C---chhHHHhHHHHHHHHHHHHHHhhHHHHHHHHhcCCCccccCC
Q 013026 392 TIEALRIVARGLNLL-EG-E---DEFMFSCAHCCLRIMESIFRCGNGWAYVQVTHFSFSFRISTA 451 (451)
Q Consensus 392 iI~~lR~il~~l~~~-~~-~---~~~l~cc~~C~l~cle~~i~y~Nr~AyV~VAiyGk~Fc~SA~ 451 (451)
+|+++|.++|+++++ ++ + .++++||++||+||+|++++|+|||||+|+|+|||+||+|||
T Consensus 389 iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAk 453 (577)
T KOG1362|consen 389 LVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAK 453 (577)
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHH
Confidence 999999999999975 22 2 369999999999999999999999999999999999999986
No 2
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=100.00 E-value=1.2e-43 Score=358.10 Aligned_cols=199 Identities=26% Similarity=0.473 Sum_probs=175.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhhcccc---------
Q 013026 253 VGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNF--------- 323 (451)
Q Consensus 253 ~gIv~lifaii~~ly~~~vr~RI~fA~aiLk~A~~~i~~~p~l~lv~~~~~iv~~~~~~~W~~~~iG~~~~--------- 323 (451)
.++++++++++.+++.++.||||++|++++|+|+++++++|+++++|+++.++.++|+++|+.+.++....
T Consensus 2 ~~ii~~i~~~i~~~~~~~~r~rI~~a~~vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l~~~g~~~~~~~~ 81 (334)
T PF04515_consen 2 FAIIFLILALIIILFIIFLRKRIPFAIAVLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYLFSIGSPVINPCN 81 (334)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 56777788877777666679999999999999999999999999999999999999999999887543210
Q ss_pred -------------ccCc---hhHHHHHHHHHHHHHHHhhccceeeeceeEEEEecCCC-----chHHHHHHHHHhhcchh
Q 013026 324 -------------YFPP---LIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQ-----SSTQFCFQRALTQNLGS 382 (451)
Q Consensus 324 -------------~~~~---~~i~~~lfsl~Wt~~vi~nv~~vTIAGvva~WYF~~~~-----~pv~~Sf~rA~t~sfGS 382 (451)
+++. +..++++|+++|+++|++|+.|+|+||++++|||++++ +|+.+|++|+++|||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~W~~~~i~~~~~~~vag~v~~WYF~~~~~~~~~~~~~~s~~~~~~~~~GS 161 (334)
T PF04515_consen 82 LPFSSGSISCCQFVFDSWSYWLIIYHLFSFFWTSQFILNVQQFTVAGVVAQWYFSRDKPNMPKSPVLRSLKRALTYHFGS 161 (334)
T ss_pred CCcccccccceeeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCCcccccchHHHHHHHHHHHHhHHH
Confidence 1222 25578999999999999999999999999999998653 58999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhccCC-----chhHHHhHHHHHHHHHHHHHHhhHHHHHHHHhcCCCccccCC
Q 013026 383 ACLGSLFVPTIEALRIVARGLNLLEGE-----DEFMFSCAHCCLRIMESIFRCGNGWAYVQVTHFSFSFRISTA 451 (451)
Q Consensus 383 IcfGSLIVaiI~~lR~il~~l~~~~~~-----~~~l~cc~~C~l~cle~~i~y~Nr~AyV~VAiyGk~Fc~SA~ 451 (451)
||+|||++++++++|.++++++++.++ .+++.||++||++|+|+++||+|||||+|+|+||++||+|||
T Consensus 162 i~~gSlivaiv~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~e~~l~~~n~~ayi~~ai~G~~F~~sak 235 (334)
T PF04515_consen 162 ICFGSLIVAIVQFLRFLLRYLRRRAKKSQNKFVKFILCCLSCCLWCLEKFLEYINKYAYIYIAIYGKSFCESAK 235 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 999999999999999999999886432 358899999999999999999999999999999999999985
No 3
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.40 E-value=2.2e-07 Score=101.48 Aligned_cols=22 Identities=9% Similarity=-0.026 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHhhhhhhhccc
Q 013026 273 QRIGFCCKVLIISLQPVSKFSD 294 (451)
Q Consensus 273 ~RI~fA~aiLk~A~~~i~~~p~ 294 (451)
+-|+=++.-..+||+=+++.-+
T Consensus 795 nniKP~i~avt~ACEE~rkSes 816 (1102)
T KOG1924|consen 795 NNIKPDIVAVTAACEELRKSES 816 (1102)
T ss_pred hhcChHHHHHHHHHHHHHhhhh
Confidence 5566666666677777776544
No 4
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.36 E-value=4.1e-07 Score=99.48 Aligned_cols=14 Identities=21% Similarity=0.321 Sum_probs=8.1
Q ss_pred CCCchhhhhhhcCc
Q 013026 24 GGGEEEVKDVEKGE 37 (451)
Q Consensus 24 ~~~~~~~~~~~~~~ 37 (451)
-+.||++++..|-|
T Consensus 488 ta~qe~qael~k~e 501 (1102)
T KOG1924|consen 488 TARQEAQAELQKHE 501 (1102)
T ss_pred hHHHHHHHHHHHhh
Confidence 34566666666654
No 5
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=96.55 E-value=0.0025 Score=76.34 Aligned_cols=7 Identities=14% Similarity=0.510 Sum_probs=2.8
Q ss_pred ceeEEEE
Q 013026 354 RVISLYY 360 (451)
Q Consensus 354 Gvva~WY 360 (451)
|++++||
T Consensus 1845 GaYaTWy 1851 (2039)
T PRK15319 1845 GVYATWF 1851 (2039)
T ss_pred EEEEEee
Confidence 3344444
No 6
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=96.48 E-value=0.011 Score=61.51 Aligned_cols=6 Identities=50% Similarity=1.132 Sum_probs=2.2
Q ss_pred CCCCce
Q 013026 73 PTNPLR 78 (451)
Q Consensus 73 ~~~~~~ 78 (451)
|.+|++
T Consensus 308 ~~aP~~ 313 (487)
T KOG4672|consen 308 PDAPLQ 313 (487)
T ss_pred CCCCcc
Confidence 333333
No 7
>PHA03247 large tegument protein UL36; Provisional
Probab=95.93 E-value=0.012 Score=72.54 Aligned_cols=17 Identities=6% Similarity=0.046 Sum_probs=11.0
Q ss_pred hhhhHHHHHHHHHHhhh
Q 013026 271 VSQRIGFCCKVLIISLQ 287 (451)
Q Consensus 271 vr~RI~fA~aiLk~A~~ 287 (451)
+++|++.+=..|.-.++
T Consensus 3121 i~r~lr~TR~~L~~~~~ 3137 (3151)
T PHA03247 3121 IRRQLRRTRHALLDRSG 3137 (3151)
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 35777777776665554
No 8
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=95.40 E-value=0.048 Score=56.98 Aligned_cols=10 Identities=40% Similarity=0.259 Sum_probs=4.2
Q ss_pred cCCcccchhh
Q 013026 60 QRGFNASMMQ 69 (451)
Q Consensus 60 ~~~~~~~~~~ 69 (451)
.+-.|++-+|
T Consensus 287 ~eden~~~~~ 296 (487)
T KOG4672|consen 287 PEDENASSFQ 296 (487)
T ss_pred hhhhcccccc
Confidence 3334444444
No 9
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=95.31 E-value=0.052 Score=51.51 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=7.9
Q ss_pred cCcchhHHHHHHH
Q 013026 142 SKKYTNKISLFLF 154 (451)
Q Consensus 142 ~~k~~D~~f~iLF 154 (451)
-+.+++.+|..|+
T Consensus 121 wr~lR~~I~~tLy 133 (187)
T PF11081_consen 121 WRELRNRIFPTLY 133 (187)
T ss_pred HHHHHHHHHHHHH
Confidence 3446666776666
No 10
>PRK15313 autotransport protein MisL; Provisional
Probab=93.67 E-value=0.11 Score=59.58 Aligned_cols=7 Identities=0% Similarity=0.135 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 013026 154 FVLHMIL 160 (451)
Q Consensus 154 Fll~l~~ 160 (451)
|+.++.+
T Consensus 642 Y~ANl~A 648 (955)
T PRK15313 642 YLANNYA 648 (955)
T ss_pred HHHHHHH
Confidence 3333333
No 11
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.60 E-value=0.098 Score=53.80 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=9.3
Q ss_pred ccchhhhcCCCCCc
Q 013026 64 NASMMQTLNPTNPL 77 (451)
Q Consensus 64 ~~~~~~~~~~~~~~ 77 (451)
--=|||+-.|+-|+
T Consensus 217 PP~~~~Q~~P~P~m 230 (498)
T KOG4849|consen 217 PPLMMQQVRPTPLM 230 (498)
T ss_pred CCcccccCCCCCCC
Confidence 44578888887554
No 12
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.59 E-value=0.047 Score=63.10 Aligned_cols=13 Identities=23% Similarity=0.583 Sum_probs=5.8
Q ss_pred CCCCCCCCccccc
Q 013026 126 PAPTPTPQQASRT 138 (451)
Q Consensus 126 ~~~~~~~~q~~l~ 138 (451)
|.+||||++|++.
T Consensus 21 ps~pppPppPg~~ 33 (2365)
T COG5178 21 PSQPPPPPPPGVN 33 (2365)
T ss_pred CCCCCCccCCCcc
Confidence 3344444444553
No 13
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=91.99 E-value=0.52 Score=48.93 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=11.4
Q ss_pred cceeeeeeecCCCcccc
Q 013026 37 EVVVEEKVVDSNSNVNI 53 (451)
Q Consensus 37 ~~~~~~~~~~~~~~~~~ 53 (451)
.||++|-.|.....|..
T Consensus 123 sGvi~e~lvk~gdtV~~ 139 (457)
T KOG0559|consen 123 SGVITELLVKDGDTVTP 139 (457)
T ss_pred cceeeEEecCCCCcccC
Confidence 47777877776666654
No 14
>PRK09752 adhesin; Provisional
Probab=91.45 E-value=0.17 Score=59.25 Aligned_cols=7 Identities=43% Similarity=0.643 Sum_probs=2.8
Q ss_pred cccccCc
Q 013026 50 NVNINNI 56 (451)
Q Consensus 50 ~~~~~~~ 56 (451)
.|.|+|.
T Consensus 852 ~V~V~N~ 858 (1250)
T PRK09752 852 TVVVNSI 858 (1250)
T ss_pred EEEEEcC
Confidence 3444443
No 15
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.43 E-value=0.22 Score=57.93 Aligned_cols=11 Identities=18% Similarity=0.072 Sum_probs=4.9
Q ss_pred HHHHHHhhhHH
Q 013026 213 QKAVRVWPKFM 223 (451)
Q Consensus 213 L~llr~~a~~l 223 (451)
+.|+-..|...
T Consensus 123 lkLLeNmP~pW 133 (2365)
T COG5178 123 LKLLENMPSPW 133 (2365)
T ss_pred HHHHhcCCChH
Confidence 34444444443
No 16
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=90.35 E-value=0.75 Score=52.89 Aligned_cols=25 Identities=16% Similarity=0.037 Sum_probs=12.9
Q ss_pred cCCCCCceEEEeCcccccCCCCCCCC
Q 013026 71 LNPTNPLRIVINGGRRVTAPRIATPP 96 (451)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (451)
++|.+. ..-.+.+.|...|+|+++.
T Consensus 299 ~~~~~~-~~~~~~~~~~~~~~p~~~~ 323 (833)
T KOG1922|consen 299 LPSKVS-TFDFNFLQRESPPPPPILT 323 (833)
T ss_pred CCCCcc-ccccccCccccCCCCCCCC
Confidence 444443 3344556666666655443
No 17
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.73 E-value=0.67 Score=48.09 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=12.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Q 013026 90 PRIATPPPSQPSRQAPRIATPPPS 113 (451)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~ 113 (451)
|++.-|.+-+|+|.||+..|||+.
T Consensus 420 ~a~~~pt~~~PprPppqggppP~g 443 (488)
T KOG3895|consen 420 PAQASPTRRLPPRPPPQGGPPPRG 443 (488)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCcc
Confidence 444445555555566665555543
No 18
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=88.61 E-value=0.86 Score=49.17 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=18.8
Q ss_pred CCcchhhhhhhhhhhcCCCCCCCchhhhhhhcCc
Q 013026 4 SDPVVERETQNKEEEEGGGEGGGEEEVKDVEKGE 37 (451)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (451)
++-.-|||.-|+.-+|++.|-| -|-+++.|.|+
T Consensus 148 ~~~s~~~~~~k~~F~~~~~~AE-~~~~~A~~~~~ 180 (817)
T KOG1925|consen 148 ADTSSERSIYKARFLENVAAAE-TEKQVALAQGR 180 (817)
T ss_pred cchhhhhhhHHhHHHhhhHHHH-HHHHHHHHhcc
Confidence 3444567776766666655543 33455666664
No 19
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=87.63 E-value=1 Score=47.52 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=7.5
Q ss_pred cCCCCCCCCCCCCCCC
Q 013026 88 TAPRIATPPPSQPSRQ 103 (451)
Q Consensus 88 ~~~~~~~~~~~~~~~~ 103 (451)
|.|||+||..+.+..+
T Consensus 303 t~pPP~ppl~~~~g~~ 318 (518)
T KOG1830|consen 303 TQPPPPPPLDSPPGPD 318 (518)
T ss_pred CCCCCCCCCCCCCCCC
Confidence 4445444444444444
No 20
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=87.49 E-value=6 Score=46.18 Aligned_cols=17 Identities=12% Similarity=0.131 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 013026 147 NKISLFLFVLHMILAIG 163 (451)
Q Consensus 147 D~~f~iLFll~l~~~~~ 163 (451)
+.||.+-|+..++-+.+
T Consensus 931 ~k~y~ltFi~SIiwIsi 947 (1096)
T TIGR00927 931 RKFFVITFLGSIMWIAM 947 (1096)
T ss_pred cceeeehHHHHHHHHHH
Confidence 45777777777776433
No 21
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=87.15 E-value=0.18 Score=42.83 Aligned_cols=11 Identities=9% Similarity=0.489 Sum_probs=0.0
Q ss_pred hhhhhhhhhcC
Q 013026 10 RETQNKEEEEG 20 (451)
Q Consensus 10 ~~~~~~~~~~~ 20 (451)
|++++.+++|+
T Consensus 10 ~dse~dsdEde 20 (101)
T PF09026_consen 10 EDSESDSDEDE 20 (101)
T ss_dssp -----------
T ss_pred cccccccccch
Confidence 44444433333
No 22
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=86.79 E-value=1.1 Score=52.99 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 013026 98 SQPSRQAPRIATPPPSQPSRP 118 (451)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~ 118 (451)
+|+-.+|-++-|+||.||.|+
T Consensus 1895 pq~~~~pqp~gpqPp~~p~p~ 1915 (1958)
T KOG0391|consen 1895 PQPAAQPQPQGPQPPQQPSPQ 1915 (1958)
T ss_pred CccCCCCCCCCCCCCCCCCCC
Confidence 333334444444444444443
No 23
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.70 E-value=2.1 Score=45.74 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=6.9
Q ss_pred cCCcccchh-hhcCCCCC
Q 013026 60 QRGFNASMM-QTLNPTNP 76 (451)
Q Consensus 60 ~~~~~~~~~-~~~~~~~~ 76 (451)
.+||.-.+- +.|+|+.|
T Consensus 380 ~~gf~rp~s~~~q~pP~~ 397 (483)
T KOG2236|consen 380 NRGFKRPRSNHGQKPPQS 397 (483)
T ss_pred ccCCCCcccccCCCCCcc
Confidence 344543222 33444444
No 24
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=86.53 E-value=0.6 Score=44.13 Aligned_cols=11 Identities=18% Similarity=0.166 Sum_probs=6.9
Q ss_pred chhhhcCCCCC
Q 013026 66 SMMQTLNPTNP 76 (451)
Q Consensus 66 ~~~~~~~~~~~ 76 (451)
+|.+.+||+.|
T Consensus 154 a~~~~~~~~a~ 164 (225)
T KOG3397|consen 154 AMNHFQNAAAS 164 (225)
T ss_pred hhhhhhccccC
Confidence 45566677665
No 25
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=83.56 E-value=0.36 Score=48.33 Aligned_cols=10 Identities=40% Similarity=0.916 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q 013026 124 SPPAPTPTPQ 133 (451)
Q Consensus 124 ~~~~~~~~~~ 133 (451)
.|+++||||+
T Consensus 207 ~~~~~~~~~~ 216 (264)
T PF06003_consen 207 GPPMIPPPPP 216 (264)
T ss_dssp ----------
T ss_pred cccCCCCccc
Confidence 3333333333
No 26
>PHA03211 serine/threonine kinase US3; Provisional
Probab=83.35 E-value=1.1 Score=48.21 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 013026 94 TPPPSQPSRQAPRIATPPPSQP 115 (451)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~ 115 (451)
|+|++.|.+.+-+++||||++|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~ 56 (461)
T PHA03211 35 PETFYNPPRGVCFPPPPEHDPP 56 (461)
T ss_pred CCCCCCCccccccCCCCCCCCC
Confidence 4555555556666444443333
No 27
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=82.28 E-value=2.8 Score=40.54 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=11.7
Q ss_pred CCCchhhhhhhcCcceeeeeee-cCCCccc
Q 013026 24 GGGEEEVKDVEKGEVVVEEKVV-DSNSNVN 52 (451)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 52 (451)
+|+++|.++.=|-.+--+|-+| |-|.-|+
T Consensus 80 ~~~~~~~~~YyKkhIy~~d~~v~d~~~lv~ 109 (205)
T PF12238_consen 80 EEGREKMTKYYKKHIYKEDSEVKDYNGLVK 109 (205)
T ss_pred hccHHHHHHHHHHhccCcccccccHHHHHH
Confidence 3444444444343333333333 4433333
No 28
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=82.25 E-value=2.1 Score=45.45 Aligned_cols=9 Identities=22% Similarity=0.449 Sum_probs=3.5
Q ss_pred HHHHhhhhH
Q 013026 267 YACWVSQRI 275 (451)
Q Consensus 267 y~~~vr~RI 275 (451)
.+|.++.|+
T Consensus 382 i~~~~~le~ 390 (409)
T KOG4590|consen 382 ICCEVPLEM 390 (409)
T ss_pred hhhhhhHHH
Confidence 344333333
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.01 E-value=2.5 Score=43.66 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=13.8
Q ss_pred eeecCCCcccccCc-CCCcCCcccch
Q 013026 43 KVVDSNSNVNINNI-NGEQRGFNASM 67 (451)
Q Consensus 43 ~~~~~~~~~~~~~~-~~~~~~~~~~~ 67 (451)
+-||+|..|-.--. |=.+.+.+..+
T Consensus 101 ~hVd~nG~V~LPYLh~W~~pssdLv~ 126 (365)
T KOG2391|consen 101 EHVDPNGKVYLPYLHNWDPPSSDLVG 126 (365)
T ss_pred hccCCCCeEechhhccCCCccchHHH
Confidence 45677777765433 33555555543
No 30
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.92 E-value=3.9 Score=45.84 Aligned_cols=9 Identities=0% Similarity=0.357 Sum_probs=3.8
Q ss_pred CceEEEeCc
Q 013026 76 PLRIVINGG 84 (451)
Q Consensus 76 ~~~~~~~~~ 84 (451)
+.+|....+
T Consensus 505 ~~~~~~~~~ 513 (620)
T PRK14948 505 SIKLNLESQ 513 (620)
T ss_pred CeEEEEEec
Confidence 444444433
No 31
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=80.91 E-value=3.5 Score=39.89 Aligned_cols=13 Identities=31% Similarity=0.197 Sum_probs=5.7
Q ss_pred CCCCCchhhhhhh
Q 013026 22 GEGGGEEEVKDVE 34 (451)
Q Consensus 22 ~~~~~~~~~~~~~ 34 (451)
|=-++|.|+||++
T Consensus 93 hIy~~d~~v~d~~ 105 (205)
T PF12238_consen 93 HIYKEDSEVKDYN 105 (205)
T ss_pred hccCcccccccHH
Confidence 3334444444444
No 32
>PF05750 Rubella_Capsid: Rubella capsid protein; InterPro: IPR008819 Rubella virus is an enveloped positive-strand RNA virus of the family Togaviridae. Virions are composed of three structural proteins: a capsid and two membrane-spanning glycoproteins, E2 and E1. During virus assembly, the capsid interacts with genomic RNA to form nucleocapsids. It has been discovered that capsid phosphorylation serves to negatively regulate binding of viral genomic RNA. This may delay the initiation of nucleocapsid assembly until sufficient amounts of virus glycoproteins accumulate at the budding site and/or prevent non-specific binding to cellular RNA when levels of genomic RNA are low. It follows that at a late stage in replication, the capsid may undergo dephosphorylation before nucleocapsid assembly occurs []. This family is found together with IPR008820 from INTERPRO and IPR008821 from INTERPRO.; GO: 0016021 integral to membrane, 0019013 viral nucleocapsid
Probab=80.86 E-value=1.3 Score=42.09 Aligned_cols=55 Identities=29% Similarity=0.408 Sum_probs=25.3
Q ss_pred CCCCCCCCCCCCCCCCC---CCCCCCCCCC------CCCCCCCCCCCCC-cccccccccCcchhH
Q 013026 94 TPPPSQPSRQAPRIATP---PPSQPSRPRS------ISTSPPAPTPTPQ-QASRTALNSKKYTNK 148 (451)
Q Consensus 94 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~~~~~~-q~~l~~~~~~k~~D~ 148 (451)
||---|-+++.++.+-| ||+||+||+- ..|.|---||+.+ |.-..|--++..||.
T Consensus 80 ppeerqesrsqtpapkpsrappqqpqpprmqtgrggsaprpelgpptnpfqaavarglrpplhdp 144 (300)
T PF05750_consen 80 PPEERQESRSQTPAPKPSRAPPQQPQPPRMQTGRGGSAPRPELGPPTNPFQAAVARGLRPPLHDP 144 (300)
T ss_pred ChhhhhhhhccCCCCCCCCCCcCCCCCcccccCCCCCCCCcccCCCCChHHHHHHcccCCCCCCC
Confidence 44444444443333333 3444544432 3445544455544 444455555566663
No 33
>COG5373 Predicted membrane protein [Function unknown]
Probab=80.28 E-value=92 Score=36.18 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHH
Q 013026 253 VGVCFIAFAIGNG 265 (451)
Q Consensus 253 ~gIv~lifaii~~ 265 (451)
-|..|..+.++.+
T Consensus 226 pgaAf~LL~lIs~ 238 (931)
T COG5373 226 PGAAFALLVLISL 238 (931)
T ss_pred hhHHHHHHHHHHH
Confidence 3444444444443
No 34
>PRK13335 superantigen-like protein; Reviewed
Probab=80.02 E-value=2.6 Score=43.37 Aligned_cols=6 Identities=50% Similarity=0.429 Sum_probs=2.3
Q ss_pred eeeecC
Q 013026 42 EKVVDS 47 (451)
Q Consensus 42 ~~~~~~ 47 (451)
||+-.|
T Consensus 85 E~~s~S 90 (356)
T PRK13335 85 EKTSAS 90 (356)
T ss_pred hccccC
Confidence 443333
No 35
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.82 E-value=3.6 Score=46.11 Aligned_cols=14 Identities=14% Similarity=0.339 Sum_probs=5.9
Q ss_pred eecCCCcccccCcC
Q 013026 44 VVDSNSNVNINNIN 57 (451)
Q Consensus 44 ~~~~~~~~~~~~~~ 57 (451)
+...+-.||+...+
T Consensus 501 ~~~~~~~~~~~~~~ 514 (620)
T PRK14948 501 VLGRSIKLNLESQS 514 (620)
T ss_pred HhCCCeEEEEEecC
Confidence 33444444444333
No 36
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=78.40 E-value=6.6 Score=45.32 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=3.1
Q ss_pred hhhcCCCC
Q 013026 68 MQTLNPTN 75 (451)
Q Consensus 68 ~~~~~~~~ 75 (451)
.++..+..
T Consensus 311 ~~~~~~~~ 318 (833)
T KOG1922|consen 311 LQRESPPP 318 (833)
T ss_pred CccccCCC
Confidence 34443333
No 37
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=76.45 E-value=12 Score=39.94 Aligned_cols=17 Identities=35% Similarity=0.694 Sum_probs=8.3
Q ss_pred CCCCCCCCCCCCCCCCC
Q 013026 91 RIATPPPSQPSRQAPRI 107 (451)
Q Consensus 91 ~~~~~~~~~~~~~~~~~ 107 (451)
+|..|||..|+..+++.
T Consensus 301 rPt~pPP~ppl~~~~g~ 317 (518)
T KOG1830|consen 301 RPTQPPPPPPLDSPPGP 317 (518)
T ss_pred CCCCCCCCCCCCCCCCC
Confidence 34445555555555444
No 38
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=76.37 E-value=2.9 Score=45.28 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=7.3
Q ss_pred CCCCceEEEeCcccccC
Q 013026 73 PTNPLRIVINGGRRVTA 89 (451)
Q Consensus 73 ~~~~~~~~~~~~~~~~~ 89 (451)
|-.|..-+.-+|-|.-+
T Consensus 208 ~~s~~~~~~~~~~R~~~ 224 (817)
T KOG1925|consen 208 PQSPAPCVLLRAQRSLA 224 (817)
T ss_pred cCCCchHHHHhhhhcCC
Confidence 33344334444555443
No 39
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=75.93 E-value=4.2 Score=42.21 Aligned_cols=8 Identities=38% Similarity=0.493 Sum_probs=3.7
Q ss_pred CCCCceEE
Q 013026 73 PTNPLRIV 80 (451)
Q Consensus 73 ~~~~~~~~ 80 (451)
|.-|+||-
T Consensus 244 P~~~~Q~~ 251 (498)
T KOG4849|consen 244 PQMRLQIN 251 (498)
T ss_pred cccCcCcC
Confidence 44445543
No 40
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=75.75 E-value=0.88 Score=41.03 Aligned_cols=9 Identities=0% Similarity=0.006 Sum_probs=0.0
Q ss_pred cchhHHHHH
Q 013026 144 KYTNKISLF 152 (451)
Q Consensus 144 k~~D~~f~i 152 (451)
.|+|++.+.
T Consensus 106 ~wr~~~~~a 114 (136)
T PF04695_consen 106 TWRDVFITA 114 (136)
T ss_dssp ---------
T ss_pred hHHHHHHHH
Confidence 788865543
No 41
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=75.75 E-value=0.88 Score=46.01 Aligned_cols=18 Identities=17% Similarity=0.014 Sum_probs=0.0
Q ss_pred CCcchhHHHHHHHHHHHH
Q 013026 248 PATDGVGVCFIAFAIGNG 265 (451)
Q Consensus 248 ~~~~~~gIv~lifaii~~ 265 (451)
++.+..|++++++++..+
T Consensus 102 GQ~LF~Gi~~l~l~~lLa 119 (381)
T PF05297_consen 102 GQTLFVGIVILFLCCLLA 119 (381)
T ss_dssp ------------------
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 445678888888776554
No 42
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.14 E-value=4.5 Score=44.90 Aligned_cols=12 Identities=8% Similarity=-0.139 Sum_probs=5.6
Q ss_pred chhHHHHHHHHH
Q 013026 145 YTNKISLFLFVL 156 (451)
Q Consensus 145 ~~D~~f~iLFll 156 (451)
.++.|-.++=.+
T Consensus 467 ~~~~w~~~~~~~ 478 (585)
T PRK14950 467 LEAIWKQILRDV 478 (585)
T ss_pred HHHHHHHHHHHH
Confidence 444555554433
No 43
>PF15195 TMEM210: TMEM210 family
Probab=75.12 E-value=4.6 Score=34.50 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=27.3
Q ss_pred CCcchhhhhhhhhhhcCCCCCCCchhhhhhhcCcceeeeeeecCCCcccccCcCCCcCCcccchhhhcCCCC
Q 013026 4 SDPVVERETQNKEEEEGGGEGGGEEEVKDVEKGEVVVEEKVVDSNSNVNINNINGEQRGFNASMMQTLNPTN 75 (451)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (451)
|.+.--|-.++|-+|.-++ |||.-|.. -+-||..+.|.+ ..+|||+-|.-..
T Consensus 43 kgetcP~h~~~Rlv~~~Gv----QEdrmDLh--~V~VEShlmDpD--------------leVsmm~~Le~~~ 94 (116)
T PF15195_consen 43 KGETCPGHMDNRLVGHFGV----QEDRMDLH--TVHVESHLMDPD--------------LEVSMMPPLEDQS 94 (116)
T ss_pred cCCCCccccccchhhcccc----ccccccce--eeeeeeeccCCC--------------ccccccCccccCc
Confidence 3333345556665555444 33333332 345666666643 5678888776443
No 44
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=74.70 E-value=0.97 Score=38.55 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=0.0
Q ss_pred hhhhhhhhhcCCCC
Q 013026 10 RETQNKEEEEGGGE 23 (451)
Q Consensus 10 ~~~~~~~~~~~~~~ 23 (451)
.|++..|+++.+.|
T Consensus 14 ~dsdEdeeeededE 27 (101)
T PF09026_consen 14 SDSDEDEEEEDEDE 27 (101)
T ss_dssp --------------
T ss_pred cccccchhhhhhcc
Confidence 34444444333333
No 45
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=73.15 E-value=88 Score=29.85 Aligned_cols=21 Identities=14% Similarity=0.370 Sum_probs=13.5
Q ss_pred cCcCCCcCCcccchhhhcCCCC
Q 013026 54 NNINGEQRGFNASMMQTLNPTN 75 (451)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~ 75 (451)
|=+.+|++|.+|+.+=- +|+.
T Consensus 37 ~LleaQk~G~tA~~lfG-~P~~ 57 (206)
T PF06570_consen 37 HLLEAQKKGKTARQLFG-DPKE 57 (206)
T ss_pred HHHHHHhCCCcHHHHcC-CHHH
Confidence 34556777888877655 5553
No 46
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=72.57 E-value=32 Score=34.09 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=8.2
Q ss_pred cCcchhHHHHHHHH
Q 013026 142 SKKYTNKISLFLFV 155 (451)
Q Consensus 142 ~~k~~D~~f~iLFl 155 (451)
++.+-.+-+.+|..
T Consensus 44 R~~FiRKVYsIl~~ 57 (237)
T KOG2322|consen 44 RWGFIRKVYSILSI 57 (237)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555666666654
No 47
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=71.82 E-value=2 Score=35.64 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=20.6
Q ss_pred chhhhhhhhhhhcCCCCCCCchhhhh
Q 013026 7 VVERETQNKEEEEGGGEGGGEEEVKD 32 (451)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (451)
-++|=.|+.|...||.|||+|||..+
T Consensus 42 li~RIreraEDSGnES~Gd~EeeL~~ 67 (81)
T PF00558_consen 42 LIERIRERAEDSGNESDGDEEEELSA 67 (81)
T ss_dssp HHHHHHCTTTCCHCTTTTCCHH-CHC
T ss_pred HHHHHHcccccCCCCCCCcHHHHHHH
Confidence 46788889999999988888887776
No 48
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=71.51 E-value=15 Score=41.48 Aligned_cols=30 Identities=20% Similarity=0.106 Sum_probs=17.4
Q ss_pred eeeeeeecCCCcccccCcCCCcCCcccchh
Q 013026 39 VVEEKVVDSNSNVNINNINGEQRGFNASMM 68 (451)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (451)
++|...--.|||+++...|.+..+-+-+.+
T Consensus 136 ~y~a~~~~~~Sn~t~~~f~~~ss~s~~~~~ 165 (944)
T KOG4307|consen 136 GYEASYPPQNSNATRTSFNNQSSYSNRQEI 165 (944)
T ss_pred eeeeccCccccccccceeccccccCCchhh
Confidence 344444445777777766666655555444
No 49
>PF02993 MCPVI: Minor capsid protein VI; InterPro: IPR004243 This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. Residues at the C-terminal end of the protein may act as a protease cofactor leading to activation of the adenovirus proteinase [].; GO: 0019028 viral capsid; PDB: 1AVP_B.
Probab=71.48 E-value=1.3 Score=43.69 Aligned_cols=10 Identities=20% Similarity=0.508 Sum_probs=0.0
Q ss_pred hhhhhhhhhh
Q 013026 8 VERETQNKEE 17 (451)
Q Consensus 8 ~~~~~~~~~~ 17 (451)
||||+||+-|
T Consensus 98 vq~~lekrle 107 (238)
T PF02993_consen 98 VQKDLEKRLE 107 (238)
T ss_dssp ----------
T ss_pred HHHHHHHHhc
Confidence 6777777655
No 50
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.36 E-value=10 Score=38.29 Aligned_cols=6 Identities=17% Similarity=0.157 Sum_probs=2.3
Q ss_pred CCCCCC
Q 013026 122 STSPPA 127 (451)
Q Consensus 122 ~~~~~~ 127 (451)
.+||..
T Consensus 284 ~~qPV~ 289 (338)
T KOG0917|consen 284 LFQPVS 289 (338)
T ss_pred cccccc
Confidence 333333
No 51
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=70.05 E-value=44 Score=39.43 Aligned_cols=25 Identities=8% Similarity=-0.023 Sum_probs=13.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhH
Q 013026 250 TDGVGVCFIAFAIGNGLYACWVSQRI 275 (451)
Q Consensus 250 ~~~~gIv~lifaii~~ly~~~vr~RI 275 (451)
.++-|++++++-++.+++.+| .+||
T Consensus 584 tr~EgIILLlLYiiYVvvm~~-n~~i 608 (1096)
T TIGR00927 584 AWWESLLLLLAYALYVFTMKW-NKQI 608 (1096)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-hHHH
Confidence 456677766665554444444 3444
No 52
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=68.28 E-value=12 Score=40.14 Aligned_cols=8 Identities=25% Similarity=0.592 Sum_probs=4.4
Q ss_pred ccccCCCC
Q 013026 85 RRVTAPRI 92 (451)
Q Consensus 85 ~~~~~~~~ 92 (451)
+|.-+|||
T Consensus 283 kR~~SPPP 290 (458)
T PF10446_consen 283 KRLRSPPP 290 (458)
T ss_pred ccccCCCc
Confidence 45557653
No 53
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=68.14 E-value=8.2 Score=40.58 Aligned_cols=11 Identities=18% Similarity=0.570 Sum_probs=5.3
Q ss_pred CCCCCceEEEe
Q 013026 72 NPTNPLRIVIN 82 (451)
Q Consensus 72 ~~~~~~~~~~~ 82 (451)
.|+.|-++++-
T Consensus 58 ~~~~~~~~v~~ 68 (376)
T PRK13855 58 EPAPPSTMIAT 68 (376)
T ss_pred CCCCCCcceec
Confidence 35555555543
No 54
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=67.80 E-value=11 Score=40.40 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=7.9
Q ss_pred CCCcccccccccCcc
Q 013026 131 TPQQASRTALNSKKY 145 (451)
Q Consensus 131 ~~~q~~l~~~~~~k~ 145 (451)
|+--|+...++-+||
T Consensus 320 ~~k~pp~~ELeGkkW 334 (480)
T KOG2675|consen 320 PKKKPPVKELEGKKW 334 (480)
T ss_pred CCCCCCceeeccceE
Confidence 333455556665555
No 55
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=66.97 E-value=15 Score=38.71 Aligned_cols=14 Identities=14% Similarity=0.069 Sum_probs=6.0
Q ss_pred HHHHhhhhhhhccc
Q 013026 281 VLIISLQPVSKFSD 294 (451)
Q Consensus 281 iLk~A~~~i~~~p~ 294 (451)
++...++++.++.+
T Consensus 221 LIPkGS~liG~Y~s 234 (376)
T PRK13855 221 LLDRGTTVVGEIQR 234 (376)
T ss_pred EecccCEEEEEeCC
Confidence 34444444444433
No 56
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=66.96 E-value=11 Score=37.94 Aligned_cols=11 Identities=45% Similarity=0.619 Sum_probs=6.9
Q ss_pred eeecCCCcccc
Q 013026 43 KVVDSNSNVNI 53 (451)
Q Consensus 43 ~~~~~~~~~~~ 53 (451)
|+|||..-|..
T Consensus 114 ~lv~~~di~e~ 124 (274)
T PLN02983 114 KLVDSRDIVEL 124 (274)
T ss_pred hhhccccceee
Confidence 67777665543
No 57
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=66.32 E-value=12 Score=40.49 Aligned_cols=14 Identities=14% Similarity=0.212 Sum_probs=8.3
Q ss_pred CCCCcchhhhhhhh
Q 013026 2 GASDPVVERETQNK 15 (451)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (451)
+++||-.+|.+|-.
T Consensus 238 ~k~e~q~~~~s~~~ 251 (484)
T KOG3655|consen 238 LKAEPQPRRWSEQN 251 (484)
T ss_pred cccCcCCCCcchhc
Confidence 35666666666544
No 58
>PF03353 Lin-8: Ras-mediated vulval-induction antagonist; InterPro: IPR005020 This is a family of Caenorhabditis elegans proteins of unknown function.
Probab=64.94 E-value=18 Score=36.81 Aligned_cols=14 Identities=21% Similarity=0.142 Sum_probs=9.0
Q ss_pred cCcchhHHHHHHHH
Q 013026 142 SKKYTNKISLFLFV 155 (451)
Q Consensus 142 ~~k~~D~~f~iLFl 155 (451)
.+...|.+=-.||-
T Consensus 269 ~Per~~~iR~~lf~ 282 (313)
T PF03353_consen 269 HPERIKLIRQALFK 282 (313)
T ss_pred CcHHHHHHHHHHHH
Confidence 34677777677763
No 59
>KOG4090 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.26 E-value=14 Score=34.18 Aligned_cols=11 Identities=18% Similarity=0.262 Sum_probs=5.8
Q ss_pred cccccCCCCCC
Q 013026 84 GRRVTAPRIAT 94 (451)
Q Consensus 84 ~~~~~~~~~~~ 94 (451)
++|.+.|+|.+
T Consensus 4 ~s~s~~s~pr~ 14 (157)
T KOG4090|consen 4 GSRSARSSPRS 14 (157)
T ss_pred CCCCCCCCCCC
Confidence 44566665443
No 60
>PHA03211 serine/threonine kinase US3; Provisional
Probab=63.97 E-value=6.1 Score=42.43 Aligned_cols=7 Identities=14% Similarity=0.026 Sum_probs=3.1
Q ss_pred hcchhhh
Q 013026 378 QNLGSAC 384 (451)
Q Consensus 378 ~sfGSIc 384 (451)
||||-+.
T Consensus 346 wSlGviL 352 (461)
T PHA03211 346 WSAGLVI 352 (461)
T ss_pred HHHHHHH
Confidence 4444443
No 61
>PRK03427 cell division protein ZipA; Provisional
Probab=63.21 E-value=25 Score=36.52 Aligned_cols=21 Identities=19% Similarity=-0.032 Sum_probs=10.7
Q ss_pred ceeeeeeecCCCcccccCcCC
Q 013026 38 VVVEEKVVDSNSNVNINNING 58 (451)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~ 58 (451)
||-|.+|..++.+-..++.++
T Consensus 62 GvGevrv~~~~~~~~~~~~~~ 82 (333)
T PRK03427 62 GVGEVRVHRVNHAPANAQEHE 82 (333)
T ss_pred CccceeccCCCCCCCcccccc
Confidence 444556666555544444333
No 62
>PHA03378 EBNA-3B; Provisional
Probab=62.11 E-value=15 Score=41.37 Aligned_cols=17 Identities=18% Similarity=0.120 Sum_probs=11.0
Q ss_pred ccccCcCCCcCCcccch
Q 013026 51 VNINNINGEQRGFNASM 67 (451)
Q Consensus 51 ~~~~~~~~~~~~~~~~~ 67 (451)
+.|.|||-+++.-+++-
T Consensus 667 ~~~~hi~~~p~~~~~~~ 683 (991)
T PHA03378 667 TQIGHIPYQPSPTGANT 683 (991)
T ss_pred cccCCcCCCCCCCCccc
Confidence 45677777776665543
No 63
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=62.10 E-value=22 Score=40.62 Aligned_cols=7 Identities=14% Similarity=-0.106 Sum_probs=2.6
Q ss_pred hhhhhhc
Q 013026 13 QNKEEEE 19 (451)
Q Consensus 13 ~~~~~~~ 19 (451)
+.=+|+-
T Consensus 524 ~~~~ega 530 (894)
T KOG0132|consen 524 EAWCEGA 530 (894)
T ss_pred HHhhhhc
Confidence 3333433
No 64
>PF10529 Hist_rich_Ca-bd: Histidine-rich Calcium-binding repeat region; InterPro: IPR019552 This entry represents a histidine-rich calcium-binding repeat which appears in proteins called histidine-rich-calcium binding proteins (HRC). HRC is a high capacity, low affinity Ca2+-binding protein, residing in the lumen of the sarcoplasmic reticulum. HRC binds directly to triadin. This binding interaction occurs between the histidine-rich region of HRC and multiple clusters of charged amino acids, named KEKE motifs, in the lumenal domain of triadin. This repeat is found in the acidic region of the protein, which can be long and variable. There is also a cysteine-rich region further towards the C terminus []. HRC may regulate sarcoplasmic reticular calcium transport, play a critical role in maintaining calcium homeostasis, and function in the heart. HRC is a candidate regulator of sarcoplasmic reticular calcium uptake.
Probab=61.75 E-value=3.5 Score=23.62 Aligned_cols=11 Identities=18% Similarity=0.253 Sum_probs=6.1
Q ss_pred CCCCCCCchhh
Q 013026 20 GGGEGGGEEEV 30 (451)
Q Consensus 20 ~~~~~~~~~~~ 30 (451)
++|++|||||+
T Consensus 4 rgH~~eeDed~ 14 (15)
T PF10529_consen 4 RGHREEEDEDD 14 (15)
T ss_pred Ccccccccccc
Confidence 45666555554
No 65
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.17 E-value=5.5 Score=42.05 Aligned_cols=25 Identities=28% Similarity=0.122 Sum_probs=13.5
Q ss_pred hhhcCcceeeeeeecCCCcccccCc
Q 013026 32 DVEKGEVVVEEKVVDSNSNVNINNI 56 (451)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (451)
|-.-|+---|+-+|+.|+--.|+.-
T Consensus 289 ddd~~d~d~e~~~v~dN~~p~i~f~ 313 (514)
T KOG3130|consen 289 DDDDGDNDHEALGVGDNSIPTIYFS 313 (514)
T ss_pred cccccccchhhhccCCCcCcccccc
Confidence 3333444445667777776555443
No 66
>COG3147 DedD Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.92 E-value=54 Score=32.11 Aligned_cols=16 Identities=6% Similarity=-0.161 Sum_probs=6.9
Q ss_pred CCCCCCchhhhhhhcC
Q 013026 21 GGEGGGEEEVKDVEKG 36 (451)
Q Consensus 21 ~~~~~~~~~~~~~~~~ 36 (451)
.|-+||.++..++++=
T Consensus 32 ~~~~de~~a~p~pp~P 47 (226)
T COG3147 32 KHRQDEVAAIPLPPKP 47 (226)
T ss_pred ccccccccccCCCCCC
Confidence 3444444444444443
No 67
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=58.86 E-value=12 Score=39.85 Aligned_cols=21 Identities=38% Similarity=0.732 Sum_probs=8.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 013026 111 PPSQPSRPRSISTSPPAPTPT 131 (451)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~ 131 (451)
++++||+++..++.|-.||||
T Consensus 177 l~~~Ppaqp~~Pt~pss~ppp 197 (523)
T KOG3837|consen 177 LPSQPPAQPTAPTTPSSPPPP 197 (523)
T ss_pred CCCCCCCCCCCCCCCCCCCCC
Confidence 444444443333334343333
No 68
>TIGR00859 ENaC sodium channel transporter. This model is designed from the vertebrate members of the ENaC family.
Probab=58.82 E-value=13 Score=41.53 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=7.9
Q ss_pred ccCCCCCCCCCCCCCCCC
Q 013026 87 VTAPRIATPPPSQPSRQA 104 (451)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~ 104 (451)
-+.+|++.|..+.++.+.
T Consensus 547 ~~~~~~~~~~~~~~~~~~ 564 (595)
T TIGR00859 547 YAEPPEPVSADTPPSLQL 564 (595)
T ss_pred ccCCCCCCCCCCcccccc
Confidence 344544444444443333
No 69
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=58.79 E-value=5.7 Score=42.45 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=8.1
Q ss_pred cCcCCCcCCcccc
Q 013026 54 NNINGEQRGFNAS 66 (451)
Q Consensus 54 ~~~~~~~~~~~~~ 66 (451)
-++.|+-.||.-|
T Consensus 100 G~~TDnE~GFAdS 112 (458)
T PF10446_consen 100 GNETDNEAGFADS 112 (458)
T ss_pred CccCccccccccc
Confidence 4455666777666
No 70
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=58.15 E-value=3.9 Score=44.77 Aligned_cols=26 Identities=35% Similarity=0.665 Sum_probs=14.1
Q ss_pred hhhhhhhhcCCCCCCCchhhhhhhcC
Q 013026 11 ETQNKEEEEGGGEGGGEEEVKDVEKG 36 (451)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (451)
|+|+.+.+|+..||+|+||+|++|+.
T Consensus 412 dsen~d~~~~s~E~~~eee~e~~ee~ 437 (739)
T KOG2140|consen 412 DSENEDDEDGSSEDDDEEEDESVEED 437 (739)
T ss_pred cccccccccccccccccccccccccc
Confidence 34444445555555566666665554
No 71
>PTZ00438 gamete antigen 27/25-like protein; Provisional
Probab=57.42 E-value=4.7 Score=40.45 Aligned_cols=29 Identities=55% Similarity=0.695 Sum_probs=13.7
Q ss_pred hhhhhhhhhhcCCCCCCCchhhhhhhcCcceeee
Q 013026 9 ERETQNKEEEEGGGEGGGEEEVKDVEKGEVVVEE 42 (451)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (451)
||-+|++|++|.+ -||.++||+-|+|-||
T Consensus 102 ergtq~~e~e~~~-----ve~i~eveevevveee 130 (374)
T PTZ00438 102 ERGTQKEEEEDED-----VEEIEEVEEVEVVEEE 130 (374)
T ss_pred hcCccchhhhhhh-----hhhhhhhhhhhhhhhh
Confidence 4555555554444 3444455554444333
No 72
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=56.91 E-value=38 Score=38.27 Aligned_cols=23 Identities=4% Similarity=-0.048 Sum_probs=17.5
Q ss_pred HhhhhHHHHHHHHHHhhhhhhhc
Q 013026 270 WVSQRIGFCCKVLIISLQPVSKF 292 (451)
Q Consensus 270 ~vr~RI~fA~aiLk~A~~~i~~~ 292 (451)
|+-+-++-|.+.||.|=..+.+.
T Consensus 435 ~l~~dv~~A~~~L~~AD~~La~~ 457 (656)
T PRK06975 435 QLTGNVQLALIALQNADARLATS 457 (656)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhc
Confidence 33577888888999888887654
No 73
>PRK10649 hypothetical protein; Provisional
Probab=56.06 E-value=2.4e+02 Score=31.47 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhhhH
Q 013026 204 LSISLSFSWQKAVRVWPKF 222 (451)
Q Consensus 204 vs~vlS~~wL~llr~~a~~ 222 (451)
=++++|++|+..+-.+++.
T Consensus 48 ~~~~~~~~~~~~~~l~p~~ 66 (577)
T PRK10649 48 DALLFSSLWLIPVFLFPRR 66 (577)
T ss_pred HHHHHHHHHHHHHHHhhHH
Confidence 3445566676666556554
No 74
>PF15451 DUF4632: Domain of unknown function (DUF4632)
Probab=55.25 E-value=4.6 Score=31.69 Aligned_cols=20 Identities=45% Similarity=0.697 Sum_probs=10.4
Q ss_pred hhhhcCCCCCCCchhhhhhhcCc
Q 013026 15 KEEEEGGGEGGGEEEVKDVEKGE 37 (451)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (451)
+|.+|.|+|+|||+ +-|||.
T Consensus 6 kesgdad~e~d~e~---ese~ga 25 (71)
T PF15451_consen 6 KESGDADGEADEEE---ESEKGA 25 (71)
T ss_pred cccccccccccccc---ccccCC
Confidence 45556566655433 345553
No 75
>KOG2500 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.10 E-value=27 Score=34.36 Aligned_cols=7 Identities=29% Similarity=0.610 Sum_probs=3.4
Q ss_pred hhhcCcc
Q 013026 32 DVEKGEV 38 (451)
Q Consensus 32 ~~~~~~~ 38 (451)
--.+||.
T Consensus 151 gFKEGeT 157 (253)
T KOG2500|consen 151 GFKEGET 157 (253)
T ss_pred cccCCcE
Confidence 4455543
No 76
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=52.97 E-value=4.1e+02 Score=30.63 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhhhH
Q 013026 203 LLSISLSFSWQKAVRVWPKF 222 (451)
Q Consensus 203 ~vs~vlS~~wL~llr~~a~~ 222 (451)
+..++.+++|-.+...+-|.
T Consensus 213 lG~iiG~li~G~LsDR~GRR 232 (742)
T TIGR01299 213 LGMMVGAFFWGGLADKLGRK 232 (742)
T ss_pred HHHHHHHHHHHHHHHHhCcH
Confidence 34444555666666666554
No 77
>KOG3034 consensus Isoamyl acetate-hydrolyzing esterase and related enzymes [General function prediction only]
Probab=52.53 E-value=8.1 Score=39.30 Aligned_cols=61 Identities=21% Similarity=0.288 Sum_probs=33.1
Q ss_pred hhhhhhhhhhhcCCCCCCCchhhhhhhcCcceeeeeeecCCCcccccCc----CCCcCCcccchhhhcCCCCC
Q 013026 8 VERETQNKEEEEGGGEGGGEEEVKDVEKGEVVVEEKVVDSNSNVNINNI----NGEQRGFNASMMQTLNPTNP 76 (451)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 76 (451)
.+|+.+..|+.+++.|+|+|||.++.|+-++ .++-|||+-+ ++-..+.-.-+|||+==..+
T Consensus 22 ~~r~~~e~~~v~~~~edddD~d~~~eeek~~--------e~e~vnidFE~~~p~d~D~~giknLL~Qlfl~~~ 86 (308)
T KOG3034|consen 22 FQRDEEEEEDVEDESEDDDDEDKENEEEKEV--------EDEEVNIDFEAYSPSDVDADGIKNLLQQLFLRAH 86 (308)
T ss_pred hhccccccccccccccCcccccccchhhhcc--------ccceEeccccccCCCCcchHHHHHHHHHHhcccc
Confidence 4466666666666666666666666555533 2334555433 33333444557777754433
No 78
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.13 E-value=33 Score=38.53 Aligned_cols=6 Identities=33% Similarity=0.778 Sum_probs=2.3
Q ss_pred HHHHHH
Q 013026 211 SWQKAV 216 (451)
Q Consensus 211 ~wL~ll 216 (451)
.|..+.
T Consensus 505 ~W~~~~ 510 (614)
T PRK14971 505 YWQEFA 510 (614)
T ss_pred HHHHHH
Confidence 343333
No 79
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=51.90 E-value=31 Score=36.32 Aligned_cols=11 Identities=18% Similarity=0.253 Sum_probs=4.9
Q ss_pred CCCCCCCCCCC
Q 013026 123 TSPPAPTPTPQ 133 (451)
Q Consensus 123 ~~~~~~~~~~~ 133 (451)
.++..||++++
T Consensus 208 k~~v~~~~~~p 218 (457)
T KOG0559|consen 208 KPSVAQPKPPP 218 (457)
T ss_pred CccccCCCCCc
Confidence 44444444444
No 80
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=50.64 E-value=22 Score=35.42 Aligned_cols=10 Identities=40% Similarity=0.840 Sum_probs=4.3
Q ss_pred HHHHhhcccc
Q 013026 166 GFLVFKGIQG 175 (451)
Q Consensus 166 ~~l~~~g~~~ 175 (451)
+.+++.++.+
T Consensus 151 G~lL~n~i~~ 160 (247)
T PF09849_consen 151 GMLLANGIES 160 (247)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 81
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.40 E-value=50 Score=39.11 Aligned_cols=7 Identities=14% Similarity=-0.059 Sum_probs=3.0
Q ss_pred CCCcccc
Q 013026 131 TPQQASR 137 (451)
Q Consensus 131 ~~~q~~l 137 (451)
|+|.+.+
T Consensus 928 ~~~~Q~~ 934 (1049)
T KOG0307|consen 928 PLQSQPL 934 (1049)
T ss_pred CcccccC
Confidence 3444444
No 82
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.03 E-value=39 Score=35.58 Aligned_cols=9 Identities=22% Similarity=0.254 Sum_probs=4.2
Q ss_pred CCCCCcccc
Q 013026 129 TPTPQQASR 137 (451)
Q Consensus 129 ~~~~~q~~l 137 (451)
++|||+|+.
T Consensus 457 ~gppq~prt 465 (488)
T KOG3895|consen 457 DGPPQIPRT 465 (488)
T ss_pred CCCCCCCCC
Confidence 444554443
No 83
>PTZ00429 beta-adaptin; Provisional
Probab=49.91 E-value=13 Score=42.78 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=7.4
Q ss_pred cCCcccchhhhcCCCCC
Q 013026 60 QRGFNASMMQTLNPTNP 76 (451)
Q Consensus 60 ~~~~~~~~~~~~~~~~~ 76 (451)
..-.|+++|..+--.-|
T Consensus 664 ~~~~~~~~~~~~~~~~~ 680 (746)
T PTZ00429 664 NGAQHADPLGDLFSGLP 680 (746)
T ss_pred ccccccCcHHHHhcCCC
Confidence 33344555544443333
No 84
>PRK13732 single-stranded DNA-binding protein; Provisional
Probab=49.48 E-value=23 Score=33.45 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=7.7
Q ss_pred hhhcCcce-eeeeee
Q 013026 32 DVEKGEVV-VEEKVV 45 (451)
Q Consensus 32 ~~~~~~~~-~~~~~~ 45 (451)
-+.||..| ||-++.
T Consensus 71 ~L~KG~~V~VeGrL~ 85 (175)
T PRK13732 71 YLRKGAQVYIEGQLR 85 (175)
T ss_pred hcCCCCEEEEEEEEE
Confidence 46788544 444443
No 85
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=48.67 E-value=63 Score=35.54 Aligned_cols=17 Identities=24% Similarity=0.306 Sum_probs=7.4
Q ss_pred CchhhhhhhcCcceeee
Q 013026 26 GEEEVKDVEKGEVVVEE 42 (451)
Q Consensus 26 ~~~~~~~~~~~~~~~~~ 42 (451)
+||+++|-..++.||.+
T Consensus 210 ~d~~d~dksd~~lvvdv 226 (705)
T KOG0639|consen 210 KDESDGDKSDDNLVVDV 226 (705)
T ss_pred cccccccccCCceEEee
Confidence 33444444444444443
No 86
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=48.54 E-value=5.8 Score=41.66 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=0.0
Q ss_pred CCcccchhhhcCCCC
Q 013026 61 RGFNASMMQTLNPTN 75 (451)
Q Consensus 61 ~~~~~~~~~~~~~~~ 75 (451)
+.|.++ +=+-+|..
T Consensus 4 daFsa~-lFkWdpr~ 17 (386)
T PF01698_consen 4 DAFSAS-LFKWDPRA 17 (386)
T ss_dssp ---------------
T ss_pred ccCCcc-ccCcCCCC
Confidence 345555 33455443
No 87
>PF12526 DUF3729: Protein of unknown function (DUF3729) ; InterPro: IPR022202 This domain of unknown function is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with PF01443 from PFAM, PF01661 from PFAM, PF05417 from PFAM, PF01660 from PFAM, PF00978 from PFAM. There is a single completely conserved residue L that may be functionally important.
Probab=48.07 E-value=43 Score=29.56 Aligned_cols=17 Identities=24% Similarity=0.597 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCCCCCCC
Q 013026 117 RPRSISTSPPAPTPTPQ 133 (451)
Q Consensus 117 ~~~~~~~~~~~~~~~~~ 133 (451)
|+.+.+++++.+.+|.+
T Consensus 84 Pps~~~P~pPvr~pp~p 100 (113)
T PF12526_consen 84 PPSPTTPPPPVRKPPTP 100 (113)
T ss_pred CCCCCCCCCCCCCCCCC
Confidence 34444455554444443
No 88
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=47.89 E-value=33 Score=37.75 Aligned_cols=10 Identities=30% Similarity=0.281 Sum_probs=5.2
Q ss_pred chhhhcCCCC
Q 013026 66 SMMQTLNPTN 75 (451)
Q Consensus 66 ~~~~~~~~~~ 75 (451)
.-.|.|=|..
T Consensus 252 q~YqELLPKv 261 (574)
T PF07462_consen 252 QAYQELLPKV 261 (574)
T ss_pred HHHHHhCCCC
Confidence 3445666643
No 89
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=47.82 E-value=7.2 Score=33.14 Aligned_cols=9 Identities=44% Similarity=0.929 Sum_probs=4.6
Q ss_pred cchhhhhhh
Q 013026 6 PVVERETQN 14 (451)
Q Consensus 6 ~~~~~~~~~ 14 (451)
+.+|+|.+.
T Consensus 48 ~lVqqe~~~ 56 (96)
T PF15387_consen 48 PLVQQEAQD 56 (96)
T ss_pred HHHHHhhcc
Confidence 345555555
No 90
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=47.33 E-value=1.8e+02 Score=28.85 Aligned_cols=23 Identities=9% Similarity=-0.006 Sum_probs=13.8
Q ss_pred ccccCcchhHHHHHHHHHHHHHH
Q 013026 139 ALNSKKYTNKISLFLFVLHMILA 161 (451)
Q Consensus 139 ~~~~~k~~D~~f~iLFll~l~~~ 161 (451)
.+..++-|-.|---.|.+-.+=.
T Consensus 37 ~~~~~~iR~~FiRKVYsIl~~QL 59 (237)
T KOG2322|consen 37 AFCDQSIRWGFIRKVYSILSIQL 59 (237)
T ss_pred ccchHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666655543
No 91
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.13 E-value=31 Score=37.67 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=6.7
Q ss_pred CCCCCCCCCCC
Q 013026 93 ATPPPSQPSRQ 103 (451)
Q Consensus 93 ~~~~~~~~~~~ 103 (451)
+|||.+|++|+
T Consensus 491 ~ppPrpq~sHs 501 (737)
T KOG1955|consen 491 EPPPRPQSSHS 501 (737)
T ss_pred CCCCCCccccc
Confidence 46666676654
No 92
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.85 E-value=22 Score=39.61 Aligned_cols=18 Identities=28% Similarity=0.459 Sum_probs=11.0
Q ss_pred CceEEEeCcccccCCCCC
Q 013026 76 PLRIVINGGRRVTAPRIA 93 (451)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~ 93 (451)
++|+....|--.+.||++
T Consensus 100 ~~~~k~~~~~ws~~pPma 117 (728)
T KOG4592|consen 100 SNRIKLDSGVWSSQPPMA 117 (728)
T ss_pred CCCccccccccccCCCcc
Confidence 556666666666666543
No 93
>COG5137 Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]
Probab=46.83 E-value=8.3 Score=37.69 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=7.0
Q ss_pred CCCCCCCchhhhhhhcCc
Q 013026 20 GGGEGGGEEEVKDVEKGE 37 (451)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~ 37 (451)
.+.|+|+||++.+.+-||
T Consensus 186 d~~EeeeDee~~~~~~gE 203 (279)
T COG5137 186 DGREEEEDEEVGSDSYGE 203 (279)
T ss_pred ccchhhhhhccccccccc
Confidence 333444444433333333
No 94
>KOG2399 consensus K+-dependent Na+:Ca2+ antiporter [Inorganic ion transport and metabolism]
Probab=46.73 E-value=4.8e+02 Score=29.54 Aligned_cols=15 Identities=33% Similarity=0.237 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHH
Q 013026 147 NKISLFLFVLHMILA 161 (451)
Q Consensus 147 D~~f~iLFll~l~~~ 161 (451)
+.|-.-++++|....
T Consensus 379 ~~Wsk~l~~~~~~~~ 393 (605)
T KOG2399|consen 379 LSWSKPLNLLQVVLA 393 (605)
T ss_pred ccHHHHHHHHHHHHH
Confidence 346666666666664
No 95
>PLN03029 type-a response regulator protein; Provisional
Probab=46.51 E-value=10 Score=36.38 Aligned_cols=7 Identities=14% Similarity=0.406 Sum_probs=4.2
Q ss_pred cCcchhH
Q 013026 142 SKKYTNK 148 (451)
Q Consensus 142 ~~k~~D~ 148 (451)
+++||++
T Consensus 212 ~~~~~~~ 218 (222)
T PLN03029 212 RPRYNGI 218 (222)
T ss_pred CcccCCc
Confidence 4557764
No 96
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=46.47 E-value=39 Score=32.39 Aligned_cols=17 Identities=0% Similarity=0.051 Sum_probs=8.9
Q ss_pred ccccccCcchhHHHHHH
Q 013026 137 RTALNSKKYTNKISLFL 153 (451)
Q Consensus 137 l~~~~~~k~~D~~f~iL 153 (451)
..+-+.+-|++.=..|+
T Consensus 113 ~~~~~~~swr~lR~~I~ 129 (187)
T PF11081_consen 113 ASRQEYRSWRELRNRIF 129 (187)
T ss_pred cCccCchHHHHHHHHHH
Confidence 34455556666554443
No 97
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=46.38 E-value=59 Score=33.35 Aligned_cols=7 Identities=14% Similarity=0.035 Sum_probs=2.6
Q ss_pred chhhhcC
Q 013026 66 SMMQTLN 72 (451)
Q Consensus 66 ~~~~~~~ 72 (451)
+.-++..
T Consensus 85 ~p~~q~q 91 (324)
T COG3115 85 SPQHQYQ 91 (324)
T ss_pred chhhhhc
Confidence 3333333
No 98
>PF14017 DUF4233: Protein of unknown function (DUF4233)
Probab=46.07 E-value=2e+02 Score=25.01 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=19.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhHHHH
Q 013026 251 DGVGVCFIAFAIGNGLYACWVSQRIGFC 278 (451)
Q Consensus 251 ~~~gIv~lifaii~~ly~~~vr~RI~fA 278 (451)
+..+++.++|+..+ .|..+.|+||+.-
T Consensus 77 p~m~vvG~iF~~~W-~~~l~lg~~i~~~ 103 (107)
T PF14017_consen 77 PAMFVVGVIFAAVW-WYALYLGRRIDRR 103 (107)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 46677778888765 4666778888653
No 99
>cd06165 Sortase_A_1 Sortase A (SrtA) or subfamily-1 sortases are cysteine transpeptidases found in gram-positive bacteria that anchor surface proteins to peptidoglycans of the bacterial cell wall envelope. They do so by catalyzing a transpeptidation reaction in which the surface protein substrate is cleaved at a conserved cell wall sorting signal (usually a pentapeptide motif), and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. This group contains a subset of Class A (subfamily-1) sortases, excluding SrtA from Staphylococcus aureus. Sortase A cleaves between threonine and glycine of the LPXTG motif in a wide range of protein substrates. It affects the ability of a pathogen to establish successful infection. Sortase A contains an N-terminal region that functions as both a signal peptide for secretion and a stop-tra
Probab=45.93 E-value=19 Score=31.54 Aligned_cols=55 Identities=11% Similarity=0.090 Sum_probs=43.8
Q ss_pred hhhhcCcceeeeeeecCCCcccccCcCCCcCCcccchhhhcCCCCCceEEEeCcc
Q 013026 31 KDVEKGEVVVEEKVVDSNSNVNINNINGEQRGFNASMMQTLNPTNPLRIVINGGR 85 (451)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (451)
++...|-|..++...-.+.|.-|-+||+...|.+-+.|+++++.+...+...+++
T Consensus 24 ~~l~~g~g~~~~~~~~g~gn~vIaGH~~~~~~~~F~~L~~l~~Gd~I~l~~~~~~ 78 (127)
T cd06165 24 ANLLYGAGTMKEDQKMGKGNYALAGHNMRNKGVLFSPLYKVKVGDKIYLTDKDNV 78 (127)
T ss_pred HHHhhcceeccCcCCCCCccEEEEcccCCCCCcccCCHHHCcCCCEEEEEECCEE
Confidence 3567787777654443348999999999888999999999999999999887654
No 100
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.64 E-value=46 Score=34.71 Aligned_cols=15 Identities=33% Similarity=0.749 Sum_probs=8.2
Q ss_pred CCCCCCCCCCCCCCc
Q 013026 120 SISTSPPAPTPTPQQ 134 (451)
Q Consensus 120 ~~~~~~~~~~~~~~q 134 (451)
-..+.||.|||||++
T Consensus 167 ~~~~~~p~p~p~~~~ 181 (365)
T KOG2391|consen 167 GSAYKPPLPPPPPPG 181 (365)
T ss_pred CcCcCCCCCCCCCCC
Confidence 345555566555555
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=45.56 E-value=51 Score=37.50 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=8.5
Q ss_pred CcccchhhhcCCCC
Q 013026 62 GFNASMMQTLNPTN 75 (451)
Q Consensus 62 ~~~~~~~~~~~~~~ 75 (451)
|-.++.+..++|+.
T Consensus 181 gg~a~p~~~~qpPp 194 (944)
T KOG4307|consen 181 GGDAGPYKFQQPPP 194 (944)
T ss_pred CCCCCCCccCCCCC
Confidence 44566666666654
No 102
>TIGR01076 sortase_fam LPXTG-site transpeptidase (sortase) family protein. of an LPXTG motif to the cell wall. It also includes a protein required for correct assembly of an LPXTG-containing fimbrial protein, a set of homologous proteins from Streptococcus pneumoniae, in which LPXTG proteins are common. However, related proteins are found in Bacillus subtilis and Methanobacterium thermoautotrophicum, in which LPXTG-mediated cell wall attachment is not known.
Probab=45.45 E-value=20 Score=31.98 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=42.5
Q ss_pred hhhcCcceeeeeee---cCCCcccccCcCCCcCCcccchhhhcCCCCCceEEEeCcc
Q 013026 32 DVEKGEVVVEEKVV---DSNSNVNINNINGEQRGFNASMMQTLNPTNPLRIVINGGR 85 (451)
Q Consensus 32 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (451)
+.+.|.+-.++... ..+.|+-|.+||+.+.+.+-+.|+++++-+...+...++.
T Consensus 22 ~l~~g~g~~~~s~~p~~g~~gN~vIaGH~~~~~~~~F~~L~~l~~GD~i~v~~~~~~ 78 (136)
T TIGR01076 22 TLEKGLGHLEGTSLPVGGENTRIVITGHRGLPTATMFTNLDKLKKGDMLYLHVGNEV 78 (136)
T ss_pred HHhhCCccccCCcCcccCCCCeEEEEecCCCCCCCccCCHHHCCCCCEEEEEECCcE
Confidence 45566665555554 3678999999998888899999999999999988877654
No 103
>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=45.37 E-value=10 Score=41.12 Aligned_cols=11 Identities=9% Similarity=0.168 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 013026 149 ISLFLFVLHMI 159 (451)
Q Consensus 149 ~f~iLFll~l~ 159 (451)
||.+-|+.+.+
T Consensus 424 fF~vTFigSIl 434 (588)
T KOG1307|consen 424 FFPVTFIGSIL 434 (588)
T ss_pred eeehHHHHHHH
Confidence 45555544433
No 104
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=45.11 E-value=7.1 Score=41.05 Aligned_cols=7 Identities=29% Similarity=0.330 Sum_probs=2.8
Q ss_pred HHhhccc
Q 013026 343 VMRNVVN 349 (451)
Q Consensus 343 vi~nv~~ 349 (451)
|+..||+
T Consensus 262 FL~qVQ~ 268 (386)
T PF01698_consen 262 FLIQVQN 268 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 105
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=45.00 E-value=7.9 Score=40.07 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=7.9
Q ss_pred hhhhhhhhhhhc
Q 013026 8 VERETQNKEEEE 19 (451)
Q Consensus 8 ~~~~~~~~~~~~ 19 (451)
.||-.|||||..
T Consensus 260 ~~Ra~~kR~~~~ 271 (340)
T PF12794_consen 260 YERAKEKRAEAL 271 (340)
T ss_pred HHHHHHHHHHHH
Confidence 367777777754
No 106
>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=44.61 E-value=7.2 Score=42.14 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=7.9
Q ss_pred cCcchhHHH--HHHHHHHHH
Q 013026 142 SKKYTNKIS--LFLFVLHMI 159 (451)
Q Consensus 142 ~~k~~D~~f--~iLFll~l~ 159 (451)
.|||.-+-| ++|+++.+.
T Consensus 421 ~rkfF~vTFigSIlWIA~fS 440 (588)
T KOG1307|consen 421 SRKFFPVTFIGSILWIAAFS 440 (588)
T ss_pred ccceeehHHHHHHHHHHHHH
Confidence 445444433 344444433
No 107
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=43.89 E-value=8.9 Score=39.89 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=0.0
Q ss_pred cceeeeeeecCCCc
Q 013026 37 EVVVEEKVVDSNSN 50 (451)
Q Consensus 37 ~~~~~~~~~~~~~~ 50 (451)
+..++|..-||...
T Consensus 305 ~~~~~~~~~~~~dd 318 (375)
T PF03153_consen 305 EDAINSDLDDSDDD 318 (375)
T ss_dssp --------------
T ss_pred cccccCCcCCcccc
Confidence 33444444444443
No 108
>PF15470 DUF4637: Domain of unknown function (DUF4637)
Probab=43.74 E-value=16 Score=33.51 Aligned_cols=20 Identities=5% Similarity=0.160 Sum_probs=9.0
Q ss_pred cCcCCCcCCcccchhhhcCC
Q 013026 54 NNINGEQRGFNASMMQTLNP 73 (451)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~ 73 (451)
--...|.+-+.+..|.|-++
T Consensus 71 ~PLRQEsStqqValLRRads 90 (173)
T PF15470_consen 71 CPLRQESSTQQVALLRRADS 90 (173)
T ss_pred ccccccchhhHHHHhhcccC
Confidence 33334444445555555443
No 109
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=42.89 E-value=46 Score=34.43 Aligned_cols=11 Identities=36% Similarity=0.314 Sum_probs=6.2
Q ss_pred hHHHHHHHHHh
Q 013026 367 STQFCFQRALT 377 (451)
Q Consensus 367 pv~~Sf~rA~t 377 (451)
-|++-+.||++
T Consensus 332 ITRADIE~ALR 342 (407)
T PF04625_consen 332 ITRADIERALR 342 (407)
T ss_pred hhHHHHHHHHH
Confidence 35555666654
No 110
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=42.44 E-value=11 Score=40.46 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=9.1
Q ss_pred CCCCCchhhhhhhcCc
Q 013026 22 GEGGGEEEVKDVEKGE 37 (451)
Q Consensus 22 ~~~~~~~~~~~~~~~~ 37 (451)
.|+++|+|++|+|+|+
T Consensus 330 ~~~~~~~~~~~~e~~~ 345 (429)
T PF03348_consen 330 NEDRDQADRADVEEGS 345 (429)
T ss_pred ccccccccccchhccc
Confidence 4455555555666664
No 111
>KOG1945 consensus Protein phosphatase 1 binding protein spinophilin/neurabin II [Signal transduction mechanisms]
Probab=42.42 E-value=18 Score=37.79 Aligned_cols=6 Identities=17% Similarity=0.036 Sum_probs=2.3
Q ss_pred CCcccc
Q 013026 61 RGFNAS 66 (451)
Q Consensus 61 ~~~~~~ 66 (451)
.||.++
T Consensus 21 ~~~~~~ 26 (377)
T KOG1945|consen 21 ALFEQL 26 (377)
T ss_pred HHHHHH
Confidence 333333
No 112
>PRK10263 DNA translocase FtsK; Provisional
Probab=42.28 E-value=7.7e+02 Score=30.66 Aligned_cols=23 Identities=9% Similarity=0.338 Sum_probs=13.7
Q ss_pred cCcchhHHHHHHHHHHHHHHHHH
Q 013026 142 SKKYTNKISLFLFVLHMILAIGL 164 (451)
Q Consensus 142 ~~k~~D~~f~iLFll~l~~~~~~ 164 (451)
.++-++..+.+|+++.+.+++.+
T Consensus 19 ~rrL~E~~gIlLlllAlfL~lAL 41 (1355)
T PRK10263 19 GRRLLEALLILIVLFAVWLMAAL 41 (1355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777766666666555444
No 113
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=41.86 E-value=24 Score=30.99 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=42.4
Q ss_pred hhhcCcceeeeeee-cCCCcccccCcCCCcCCcccchhhhcCCCCCceEEEeCcc
Q 013026 32 DVEKGEVVVEEKVV-DSNSNVNINNINGEQRGFNASMMQTLNPTNPLRIVINGGR 85 (451)
Q Consensus 32 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (451)
+.++|-+..++... .++.|.-|-+||+...|..-+.|+++++-++..+...+++
T Consensus 25 ~L~~g~g~~~~~~~pg~~gn~viaGH~~~~~~~~F~~L~~l~~Gd~v~v~~~~~~ 79 (126)
T cd06166 25 NLKYALGHFENTAMPGENGNFAIAGHRSYTYGRIFNRLDEVEKGDEIKVTTKNGT 79 (126)
T ss_pred HHhcceEEECCCCCCCCCceEEEEeCcCCCCCcccCChHHCCCCCEEEEEECCEE
Confidence 45667665555443 2458999999999988899999999999999999887653
No 114
>KOG2418 consensus Microtubule-associated protein TAU [Cytoskeleton]
Probab=41.78 E-value=82 Score=33.25 Aligned_cols=15 Identities=27% Similarity=0.200 Sum_probs=6.7
Q ss_pred CCceEEEeCcccccC
Q 013026 75 NPLRIVINGGRRVTA 89 (451)
Q Consensus 75 ~~~~~~~~~~~~~~~ 89 (451)
.++-.--|+|.|+-.
T Consensus 173 ~~~~~~g~~g~r~e~ 187 (448)
T KOG2418|consen 173 ADRIMQGNEGERVEE 187 (448)
T ss_pred cchhhcCCccccccc
Confidence 333333445556543
No 115
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=41.63 E-value=11 Score=37.29 Aligned_cols=7 Identities=43% Similarity=0.501 Sum_probs=2.6
Q ss_pred hhhhcCC
Q 013026 15 KEEEEGG 21 (451)
Q Consensus 15 ~~~~~~~ 21 (451)
.||.|.|
T Consensus 62 ~~~~~~~ 68 (232)
T PRK12766 62 SEETEAE 68 (232)
T ss_pred cccccch
Confidence 3333333
No 116
>PF14110 DUF4282: Domain of unknown function (DUF4282)
Probab=41.45 E-value=1.4e+02 Score=24.92 Aligned_cols=36 Identities=14% Similarity=-0.013 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHhhh
Q 013026 252 GVGVCFIAFAIGNG-LYACWVSQRIGFCCKVLIISLQ 287 (451)
Q Consensus 252 ~~gIv~lifaii~~-ly~~~vr~RI~fA~aiLk~A~~ 287 (451)
..|+..++.+.+.. ++....|=-.++.++++|.+-+
T Consensus 46 ~~g~~~~l~~~~~~l~~~i~~Ri~~E~~i~~fri~e~ 82 (90)
T PF14110_consen 46 GGGFLGLLLGPLGFLLGIILWRIMLEFLIAIFRIAEN 82 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455445444433 3444446667888888877643
No 117
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=41.40 E-value=74 Score=29.08 Aligned_cols=10 Identities=10% Similarity=-0.061 Sum_probs=5.2
Q ss_pred hhHHHHHHHH
Q 013026 146 TNKISLFLFV 155 (451)
Q Consensus 146 ~D~~f~iLFl 155 (451)
.|.=+.--|=
T Consensus 112 ~dP~y~kYfK 121 (148)
T PF10152_consen 112 DDPRYAKYFK 121 (148)
T ss_pred CCccHHHHHH
Confidence 5555555553
No 118
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=41.10 E-value=28 Score=37.87 Aligned_cols=6 Identities=0% Similarity=0.418 Sum_probs=2.4
Q ss_pred hhhhhh
Q 013026 8 VERETQ 13 (451)
Q Consensus 8 ~~~~~~ 13 (451)
||++++
T Consensus 81 LEKqLa 86 (475)
T PRK13729 81 MQKQYE 86 (475)
T ss_pred HHHHHH
Confidence 344433
No 119
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=40.78 E-value=3.6e+02 Score=28.65 Aligned_cols=27 Identities=11% Similarity=0.033 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 013026 197 QVEAASLLSISLSFSWQKAVRVWPKFM 223 (451)
Q Consensus 197 ll~~~~~vs~vlS~~wL~llr~~a~~l 223 (451)
-...+.++++++-++++++.-.....+
T Consensus 249 ~~~~a~~ig~ilV~l~~~~~yr~~gl~ 275 (397)
T TIGR01129 249 AGIKAGLIGLVLVLVFMILYYRLFGLI 275 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344555666666655555333333333
No 120
>PF15470 DUF4637: Domain of unknown function (DUF4637)
Probab=40.72 E-value=12 Score=34.30 Aligned_cols=10 Identities=50% Similarity=0.777 Sum_probs=3.9
Q ss_pred hhhhhhhhhc
Q 013026 10 RETQNKEEEE 19 (451)
Q Consensus 10 ~~~~~~~~~~ 19 (451)
||.|.+|+++
T Consensus 21 ~E~e~e~~ee 30 (173)
T PF15470_consen 21 REAEQEEAEE 30 (173)
T ss_pred chhhhhhccc
Confidence 4444333333
No 121
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=40.32 E-value=5.7e+02 Score=28.58 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 013026 198 VEAASLLSISLSFSWQKAVRVWPKFMVHFILWS 230 (451)
Q Consensus 198 l~~~~~vs~vlS~~wL~llr~~a~~lV~~~ii~ 230 (451)
+..+.++.+++++++++....+++.+-.+..++
T Consensus 45 ~~~~~~~~~~~~~~~l~~~~~~~~~~k~~~~~l 77 (555)
T COG2194 45 FSFSFLLALVFAFLLLLLLLSFPRLLKPLAGVL 77 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777778888888888887554433333
No 122
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=40.07 E-value=1.3e+02 Score=29.48 Aligned_cols=10 Identities=30% Similarity=0.647 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 013026 151 LFLFVLHMIL 160 (451)
Q Consensus 151 ~iLFll~l~~ 160 (451)
++||+++-++
T Consensus 138 AVLfLICT~L 147 (227)
T PF05399_consen 138 AVLFLICTLL 147 (227)
T ss_pred HHHHHHHHHH
Confidence 4455555444
No 123
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.26 E-value=51 Score=37.16 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=0.0
Q ss_pred EEeCcccccCCCCCCCCCCCCCCCCCCCCCC--------------------------------------CCCCCCCCCC-
Q 013026 80 VINGGRRVTAPRIATPPPSQPSRQAPRIATP--------------------------------------PPSQPSRPRS- 120 (451)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~- 120 (451)
+.+-....++||-+++||-.--.+.+++++| +|+++.|++|
T Consensus 15 v~~h~~e~~~p~~~~~~~e~~~~~~~~~pd~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~a~~~p~~a~~~~p~ 94 (922)
T KOG2677|consen 15 VDQHPAESAAPPRPVAPMEPLFKQAPPQPDPFGWDSSGHTGDAPTASEPVQELSPTPEASSSTGTSAPARPPPARPEAPK 94 (922)
T ss_pred hhcCccccCCCCCCCCCchhhccCCCCCCCCCCcCCCCCcCCCCCccCcccccCCCccccccccccCCCCCCCCCCCCCC
Q ss_pred -----------CCCCCCCCCCCCCcccccccccCcchhHHH
Q 013026 121 -----------ISTSPPAPTPTPQQASRTALNSKKYTNKIS 150 (451)
Q Consensus 121 -----------~~~~~~~~~~~~~q~~l~~~~~~k~~D~~f 150 (451)
+.+.|..-||||-+.+..+..+..--|.|.
T Consensus 95 ~~~~~~d~a~~~~~~p~a~~~pp~~~~a~~~~p~~~~~~~~ 135 (922)
T KOG2677|consen 95 KDETAVDAAAPPRPPPAARPPPPRPAPANKEKPEPEEDAWA 135 (922)
T ss_pred ccccccccccCCCCCcccCCCCCCCCCCCccCCCccccccc
No 124
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=39.17 E-value=91 Score=28.39 Aligned_cols=20 Identities=25% Similarity=0.332 Sum_probs=9.1
Q ss_pred hhhhhhhhhhcCCCCCCCch
Q 013026 9 ERETQNKEEEEGGGEGGGEE 28 (451)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (451)
+|.-+|+||.|-+.++.|++
T Consensus 28 krk~kK~~erer~r~r~~~~ 47 (137)
T PF12868_consen 28 KRKEKKKEERERERRRHDHR 47 (137)
T ss_pred HHHhhhhhhhcccccccccc
Confidence 34444444444444444443
No 125
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.86 E-value=77 Score=36.69 Aligned_cols=6 Identities=0% Similarity=-0.363 Sum_probs=2.1
Q ss_pred cccchh
Q 013026 63 FNASMM 68 (451)
Q Consensus 63 ~~~~~~ 68 (451)
+...+.
T Consensus 47 ~~~~~~ 52 (887)
T KOG1985|consen 47 AGSVPP 52 (887)
T ss_pred CCCCCC
Confidence 333333
No 126
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=38.65 E-value=47 Score=36.65 Aligned_cols=8 Identities=50% Similarity=0.680 Sum_probs=3.4
Q ss_pred hhhhhhhh
Q 013026 10 RETQNKEE 17 (451)
Q Consensus 10 ~~~~~~~~ 17 (451)
||.|++|+
T Consensus 136 rEaek~ev 143 (574)
T PF07462_consen 136 REAEKKEV 143 (574)
T ss_pred hHHHHHHH
Confidence 44444443
No 127
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=38.06 E-value=17 Score=40.87 Aligned_cols=15 Identities=7% Similarity=-0.046 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhhhhh
Q 013026 276 GFCCKVLIISLQPVS 290 (451)
Q Consensus 276 ~fA~aiLk~A~~~i~ 290 (451)
+.-...+-.|.+++.
T Consensus 446 ~~~~~nF~~A~DaL~ 460 (622)
T PF02724_consen 446 ESWVDNFWRAYDALS 460 (622)
T ss_pred ccHHHHHHHHHHHhC
Confidence 334445555556555
No 128
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=37.73 E-value=6.1e+02 Score=28.17 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhh
Q 013026 258 IAFAIGNGLYACWVSQRIGFCCKVLIISLQPVS 290 (451)
Q Consensus 258 lifaii~~ly~~~vr~RI~fA~aiLk~A~~~i~ 290 (451)
+.+++...+++.|+-..+.-+.+.|+.=-..++
T Consensus 345 ip~ai~d~~f~~wIF~SL~~Tlk~Lr~rRn~vK 377 (518)
T KOG2568|consen 345 LPLAILDAAFIYWIFISLAKTLKKLRLRRNIVK 377 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443334555666888888888888433433
No 129
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.30 E-value=8.9 Score=38.92 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=20.2
Q ss_pred hhhhhhhhhhhcCCCCCCCchhhhhhhcC
Q 013026 8 VERETQNKEEEEGGGEGGGEEEVKDVEKG 36 (451)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (451)
-|+|++|||||=.--|+|=|+-+++..+.
T Consensus 65 kq~eL~~rqeEL~Rke~ELdRREr~~a~~ 93 (313)
T KOG3088|consen 65 KQAELLKKQEELRRKEQELDRRERALARA 93 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 46788888888777777666655555554
No 130
>PF05858 BIV_Env: Bovine immunodeficiency virus surface protein (SU); InterPro: IPR008411 (Bovine immunodeficiency virus) (BIV), like the human immunodeficiency virus, is a lentivirus. It shows a great deal of genomic diversity, mostly in the viral envelope gene []. This property of the BIV group of viruses may play an important role in the pathobiology of the virus, particularly the conserved (C) 2, hypervariable (V) 1, V2 and C3 regions []. The surface protein (SU) attaches the virus to the host cell by binding to its receptor. This interaction triggers the refolding of the transmembrane protein (TM) and is thought to activate its fusogenic potential by unmasking its fusion peptide. Fusion occurs at the host cell plasma membrane. The transmembrane protein (TM) acts as a class I viral fusion protein. Under the current model, the protein has at least 3 conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes. Membranes fusion leads to delivery of the nucleocapsid into the cytoplasm. ; GO: 0016021 integral to membrane, 0030120 vesicle coat
Probab=36.47 E-value=10 Score=40.31 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=23.4
Q ss_pred hhhhhhhhhcCCCCCCCch--hhhhhhcCcceeeee
Q 013026 10 RETQNKEEEEGGGEGGGEE--EVKDVEKGEVVVEEK 43 (451)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 43 (451)
.|+.|+|++|+++|.||-+ -|||++||.-.-.|.
T Consensus 3 qdl~r~ErgE~~G~s~elr~LlQe~i~~grLT~rEa 38 (548)
T PF05858_consen 3 QDLDRVERGEGEGRSEELRDLLQEDIDKGRLTAREA 38 (548)
T ss_pred ccccccccccccCCcchHHHHHHHHhhcCcccHHHH
Confidence 4667788887777766644 488999996544443
No 131
>PRK14849 putative lipoprotein/autotransporter domain-containing protein; Provisional
Probab=36.46 E-value=27 Score=43.51 Aligned_cols=7 Identities=0% Similarity=0.373 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 013026 154 FVLHMIL 160 (451)
Q Consensus 154 Fll~l~~ 160 (451)
|+.++.+
T Consensus 1488 Y~aNlaA 1494 (1806)
T PRK14849 1488 YISNIAA 1494 (1806)
T ss_pred HHHHHHH
Confidence 4434333
No 132
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=35.89 E-value=20 Score=37.28 Aligned_cols=9 Identities=44% Similarity=0.634 Sum_probs=3.6
Q ss_pred eeeeeecCC
Q 013026 40 VEEKVVDSN 48 (451)
Q Consensus 40 ~~~~~~~~~ 48 (451)
+||.-.+|.
T Consensus 289 ~Eeeplnse 297 (348)
T KOG2652|consen 289 VEEEPLNSE 297 (348)
T ss_pred cccccccCc
Confidence 344444333
No 133
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=35.50 E-value=17 Score=37.33 Aligned_cols=30 Identities=40% Similarity=0.633 Sum_probs=19.5
Q ss_pred chhhhhhhhhhhcCCC---------CCCCchhhhhhhcCc
Q 013026 7 VVERETQNKEEEEGGG---------EGGGEEEVKDVEKGE 37 (451)
Q Consensus 7 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 37 (451)
-+.|--|+ ||+|+++ +|.||+++||+..+|
T Consensus 71 ~lkr~~q~-e~eddgg~~gi~sgp~~~gd~~~~edla~~E 109 (383)
T KOG4317|consen 71 ELKRKMQK-EEEDDGGWSGIESGPPLDGDDEEQEDLADWE 109 (383)
T ss_pred HHHHHHhh-hhccCCcccccccCCCCCCchHhHHhcCchh
Confidence 45555566 4444333 467888999998885
No 134
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.50 E-value=36 Score=37.31 Aligned_cols=11 Identities=9% Similarity=0.120 Sum_probs=5.1
Q ss_pred ccccCcchhHH
Q 013026 139 ALNSKKYTNKI 149 (451)
Q Consensus 139 ~~~~~k~~D~~ 149 (451)
......|+|+.
T Consensus 424 ~~~~~~w~~~~ 434 (504)
T PRK14963 424 AGLALRWRDVL 434 (504)
T ss_pred HHHHHHHHHHH
Confidence 33344555544
No 135
>cd05827 Sortase_C_3 Sortase C (SrtC) or subfamily-3 sortases are membrane cysteine transpeptidases found in Gram-positive bacteria that anchor surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at a conserved cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Sortase C cleaves surface proteins at the LPXTG motif between Thr and Gly and catalyzes the formation of an amide bond between the carboxyl group of Thr and the amino group of cell-wall cross bridges. It is a narrow-range enzyme required for anchoring a few substrates. It plays a role in Streptococcus pneumoniae pathogenesis and is required in the assembly of pili on the surface of Corynebacterium diphtheriae. Sortase C is
Probab=35.42 E-value=34 Score=30.17 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=41.8
Q ss_pred hhhhcCcceeeeeee---cCCCcccccCcCCCcCCcccchhhhcCCCCCceEEEeCcc
Q 013026 31 KDVEKGEVVVEEKVV---DSNSNVNINNINGEQRGFNASMMQTLNPTNPLRIVINGGR 85 (451)
Q Consensus 31 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (451)
+...+|.+-.+.... ..+.|+-|.+||+.+.+-+-+.|+++++-+...+.+.+++
T Consensus 24 ~~L~~g~g~~~gt~~p~~g~~~N~viaGH~~~~~~~~F~~L~~l~~gd~i~l~t~~~~ 81 (131)
T cd05827 24 EVLQKGVGHLEGTSLPVGGKGTHSVITGHRGLPNAKLFTDLDKLKKGDKFYIHVLGET 81 (131)
T ss_pred HHHhhCCccccCCcCcccCCCCEEEEEeCCCCCCCcccCCHHHCCCCCEEEEEECCeE
Confidence 455566555554433 2456888999998888889999999999999988887765
No 136
>cd00004 Sortase Sortases are cysteine transpeptidases, found in gram-positive bacteria, that anchor surface proteins to peptidoglycans of the bacterial cell wall envelope. They do so by catalyzing a transpeptidation reaction in which the surface protein substrate is cleaved at a conserved cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The different classes are called Sortase A or SrtA (subfamily 1), B or SrtB (subfamily 2), C or SrtC (subfamily3), D or SrtD (subfamilies 4 and 5), and E or SrtE. In two different sortase subfamilies, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one s
Probab=35.19 E-value=31 Score=30.06 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=44.3
Q ss_pred hhhhcCcceeeeeeecC-CCcccccCcCCCcCCcccchhhhcCCCCCceEEEeCcc
Q 013026 31 KDVEKGEVVVEEKVVDS-NSNVNINNINGEQRGFNASMMQTLNPTNPLRIVINGGR 85 (451)
Q Consensus 31 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (451)
+..++|-+-.++..... +.|.-|-+||+...|.+-+.|+++.+-+.+.+...++.
T Consensus 24 ~~L~~g~g~~~~~~~pg~~gn~viaGH~~~~~~~~F~~L~~l~~Gd~v~v~~~~~~ 79 (128)
T cd00004 24 AVLNKGAGHYPGTSLPGENGNTVIAGHRGGDSGTVFSDLDNLKKGDKIYLTDGGKT 79 (128)
T ss_pred HHHhhceEEecCCccCCCCceEEEEeeeCCCCCcccCCHHHCCCCCEEEEEECCEE
Confidence 45667766666655554 78999999999888999999999999999999887654
No 137
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=35.17 E-value=36 Score=32.48 Aligned_cols=26 Identities=19% Similarity=0.075 Sum_probs=10.4
Q ss_pred cccccCCCCCCC-CCCCCCCCCCCCCC
Q 013026 84 GRRVTAPRIATP-PPSQPSRQAPRIAT 109 (451)
Q Consensus 84 ~~~~~~~~~~~~-~~~~~~~~~~~~~~ 109 (451)
...-+++.|.+| +-+|++.|+..+.+
T Consensus 158 ~~~~~a~~p~~~~k~~~~~a~~~~~~~ 184 (225)
T KOG3397|consen 158 FQNAAASNPSFLSKIAQPSASSTVSAS 184 (225)
T ss_pred hhccccCCCCchhhcCCcccccccCCC
Confidence 333344443332 33455444444333
No 138
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.96 E-value=16 Score=40.86 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=12.0
Q ss_pred chhhhhhhhhhhcCCCCCCC
Q 013026 7 VVERETQNKEEEEGGGEGGG 26 (451)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~ 26 (451)
+++|+..|+||.+.|.+|||
T Consensus 137 ~~~~~~~k~~e~~~~~~eed 156 (704)
T KOG2153|consen 137 PVRRQKAKKEERESDDDEED 156 (704)
T ss_pred ccchhhhcccccccccchhc
Confidence 35588877777655444433
No 139
>PF08688 ASD1: Apx/Shroom domain ASD1; InterPro: IPR014800 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. This region is found in the actin binding protein Shroom. ASD1 has been implicated directly in F-actin binding.
Probab=33.45 E-value=32 Score=32.79 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=15.2
Q ss_pred CcccccCcCCCcCC-cccchhhh--cCCCCCceE
Q 013026 49 SNVNINNINGEQRG-FNASMMQT--LNPTNPLRI 79 (451)
Q Consensus 49 ~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~ 79 (451)
++---|++.|-|.- +.+--||| |.| -|-+.
T Consensus 40 ~~~Yr~~LK~AQ~rVLraTSFrRrDL~~-~P~~~ 72 (182)
T PF08688_consen 40 SRAYRDSLKDAQSRVLRATSFRRRDLEP-LPARL 72 (182)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccc-Ccccc
Confidence 34444556655433 33444666 667 56443
No 140
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=33.42 E-value=7.1e+02 Score=27.67 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 013026 195 LPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLS 237 (451)
Q Consensus 195 ~~ll~~~~~vs~vlS~~wL~llr~~a~~lV~~~ii~~~il~l~ 237 (451)
++...+.++.=++++++|+...-.|=+=++.+=-+++.++.++
T Consensus 203 m~fy~~m~laYvllgllW~~~~~~y~~diL~lQ~~I~~Vi~lg 245 (518)
T KOG2568|consen 203 MPFYGFMCLAYVLLGLLWFFQCAQYWHDILPLQKYITAVIALG 245 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777778888998888777776665555554444443
No 141
>KOG4425 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.31 E-value=40 Score=36.73 Aligned_cols=16 Identities=13% Similarity=0.248 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhhH
Q 013026 418 HCCLRIMESIFRCGNG 433 (451)
Q Consensus 418 ~C~l~cle~~i~y~Nr 433 (451)
+|--|+=+.+++-+-|
T Consensus 755 qchqwvddailn~mrr 770 (900)
T KOG4425|consen 755 QCHQWVDDAILNQMRR 770 (900)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555444433
No 142
>PHA03282 envelope glycoprotein E; Provisional
Probab=33.22 E-value=81 Score=34.38 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=30.5
Q ss_pred hhcC-cceeeeeeecCCCcccccCcCCCcCCcc-cchhhhcCCCCCceEE
Q 013026 33 VEKG-EVVVEEKVVDSNSNVNINNINGEQRGFN-ASMMQTLNPTNPLRIV 80 (451)
Q Consensus 33 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (451)
+..| |.+..+.|--.|..+-|.+..-+..|.. +++-..-|.+.-.+|+
T Consensus 107 ~~~~~e~~~~~rvs~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v 156 (540)
T PHA03282 107 LAPGPEFAWPPRVAVVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVV 156 (540)
T ss_pred ccCCcccccCcceeEecceEEEeeccccCCceEEEEecCCCCchhheEEE
Confidence 3444 5555666666677788888888888864 3444555666655543
No 143
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.17 E-value=44 Score=37.38 Aligned_cols=6 Identities=17% Similarity=-0.241 Sum_probs=2.2
Q ss_pred HHHHHH
Q 013026 148 KISLFL 153 (451)
Q Consensus 148 ~~f~iL 153 (451)
.|--+|
T Consensus 438 ~W~~~l 443 (584)
T PRK14952 438 MWSTVR 443 (584)
T ss_pred HHHHHH
Confidence 343333
No 144
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=33.05 E-value=38 Score=35.19 Aligned_cols=6 Identities=17% Similarity=-0.009 Sum_probs=2.2
Q ss_pred HHHHHH
Q 013026 370 FCFQRA 375 (451)
Q Consensus 370 ~Sf~rA 375 (451)
.||.+|
T Consensus 307 gAms~A 312 (362)
T KOG1546|consen 307 GAMSNA 312 (362)
T ss_pred hHHHHH
Confidence 333333
No 145
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=32.82 E-value=40 Score=29.86 Aligned_cols=10 Identities=20% Similarity=0.468 Sum_probs=4.9
Q ss_pred HHHHhhhhHH
Q 013026 267 YACWVSQRIG 276 (451)
Q Consensus 267 y~~~vr~RI~ 276 (451)
++|..|+|.+
T Consensus 19 ~~~~~rRR~r 28 (130)
T PF12273_consen 19 FYCHNRRRRR 28 (130)
T ss_pred HHHHHHHHhh
Confidence 4444455554
No 146
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.59 E-value=72 Score=35.95 Aligned_cols=9 Identities=11% Similarity=0.158 Sum_probs=5.4
Q ss_pred cCcchhHHH
Q 013026 142 SKKYTNKIS 150 (451)
Q Consensus 142 ~~k~~D~~f 150 (451)
-++|+|.+-
T Consensus 463 ~~~~~~~~~ 471 (620)
T PRK14954 463 LGSWQGKFM 471 (620)
T ss_pred cHhhhhhcc
Confidence 356777655
No 147
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=32.48 E-value=32 Score=37.33 Aligned_cols=55 Identities=11% Similarity=0.091 Sum_probs=26.9
Q ss_pred ccceeeeceeEEEEecCC--Cch-HHHHHHHHHhhcchhhhhhhhHH-----HHHHHHHHHHHHhhh
Q 013026 347 VVNLTVCRVISLYYILGM--QSS-TQFCFQRALTQNLGSACLGSLFV-----PTIEALRIVARGLNL 405 (451)
Q Consensus 347 v~~vTIAGvva~WYF~~~--~~p-v~~Sf~rA~t~sfGSIcfGSLIV-----aiI~~lR~il~~l~~ 405 (451)
...+...|.-+-|.-... +.+ -..+++ +....+||= +++| .+++++|.+++...+
T Consensus 312 ~~~vi~GG~s~~~l~~~~~~~~~ld~~~l~-~~Gs~lGsG---gviV~de~~~~v~~~~~~~~F~a~ 374 (461)
T PLN03132 312 LLAIIPGGSSVPLLPKKICDDVLMDFDALK-AVQSGLGTA---AVIVMDKSTDVVDAIARLSYFYKH 374 (461)
T ss_pred cceEEECCCCcccccHHHhCCCCCCHHHHH-hcCCCcCcc---eEEEECCCCCHHHHHHHHHHHHhc
Confidence 344555555555553221 111 133442 445566663 4443 367777776666554
No 148
>PLN03029 type-a response regulator protein; Provisional
Probab=31.77 E-value=39 Score=32.42 Aligned_cols=6 Identities=33% Similarity=0.567 Sum_probs=2.4
Q ss_pred CCceEE
Q 013026 75 NPLRIV 80 (451)
Q Consensus 75 ~~~~~~ 80 (451)
-|+-++
T Consensus 103 ipvIil 108 (222)
T PLN03029 103 IPVVIM 108 (222)
T ss_pred CcEEEE
Confidence 344333
No 149
>PF03353 Lin-8: Ras-mediated vulval-induction antagonist; InterPro: IPR005020 This is a family of Caenorhabditis elegans proteins of unknown function.
Probab=31.68 E-value=62 Score=32.94 Aligned_cols=6 Identities=33% Similarity=0.761 Sum_probs=2.3
Q ss_pred hhhcCc
Q 013026 32 DVEKGE 37 (451)
Q Consensus 32 ~~~~~~ 37 (451)
++|...
T Consensus 160 ~~~~~~ 165 (313)
T PF03353_consen 160 EVEEDD 165 (313)
T ss_pred hccccc
Confidence 334333
No 150
>PF15471 TMEM171: Transmembrane protein family 171
Probab=31.08 E-value=1.4e+02 Score=30.43 Aligned_cols=17 Identities=18% Similarity=0.509 Sum_probs=11.1
Q ss_pred CCCceEEEeCcccccCC
Q 013026 74 TNPLRIVINGGRRVTAP 90 (451)
Q Consensus 74 ~~~~~~~~~~~~~~~~~ 90 (451)
+.|.+|++.+.--+=+|
T Consensus 205 ~Ep~qVTVGDaViiFPP 221 (319)
T PF15471_consen 205 TEPVQVTVGDAVIIFPP 221 (319)
T ss_pred CCCEEEEecCEEEEcCC
Confidence 57999988655444443
No 151
>PF03303 WTF: WTF protein; InterPro: IPR004982 This is a family of mainly hypothetical Schizosacchoromyces pombe proteins that are often encoded near long terminal repeats within the genome. Their function is unknown but they contain several predicted transmembrane regions and at least one protein is up-regulated during meiosis []. Upregulation is also observed in histone deacetylase mutants, indicating their transcription is normally inhibited by hypoacetylation [].
Probab=30.88 E-value=5.5e+02 Score=25.61 Aligned_cols=41 Identities=15% Similarity=0.053 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 013026 196 PQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILL 242 (451)
Q Consensus 196 ~ll~~~~~vs~vlS~~wL~llr~~a~~lV~~~ii~~~il~l~~~i~~ 242 (451)
.++++-|++..++.++.+...-.++|.+ +.+++ .++.|+.-
T Consensus 125 vlfG~wc~~c~l~~i~l~~fYETWtKav-K~tvi-----~~~~Gi~~ 165 (247)
T PF03303_consen 125 VLFGIWCLTCTLLFIILTYFYETWTKAV-KVTVI-----VCGKGIKN 165 (247)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhh-----hhhhhhhh
Confidence 3566666644433333333333445543 43333 34455543
No 152
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=30.81 E-value=93 Score=36.32 Aligned_cols=9 Identities=11% Similarity=0.158 Sum_probs=3.9
Q ss_pred chhHHHHHH
Q 013026 145 YTNKISLFL 153 (451)
Q Consensus 145 ~~D~~f~iL 153 (451)
-++.|-.++
T Consensus 512 lr~~W~~Il 520 (824)
T PRK07764 512 LRERWPEIL 520 (824)
T ss_pred HHHHHHHHH
Confidence 444444443
No 153
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=30.47 E-value=28 Score=34.18 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=10.7
Q ss_pred hhhcCCCCCceEE
Q 013026 68 MQTLNPTNPLRIV 80 (451)
Q Consensus 68 ~~~~~~~~~~~~~ 80 (451)
.||.--+||..|.
T Consensus 115 vqrrgspnpfeis 127 (319)
T KOG3832|consen 115 VQRRGSPNPFEIS 127 (319)
T ss_pred ecccCCCCcceee
Confidence 4888888998886
No 154
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=30.38 E-value=83 Score=36.71 Aligned_cols=12 Identities=0% Similarity=0.182 Sum_probs=7.4
Q ss_pred ccCcchhHHHHH
Q 013026 141 NSKKYTNKISLF 152 (451)
Q Consensus 141 ~~~k~~D~~f~i 152 (451)
.+++|.++.-.+
T Consensus 512 lr~~W~~Il~~V 523 (824)
T PRK07764 512 LRERWPEILAAV 523 (824)
T ss_pred HHHHHHHHHHHH
Confidence 456777766544
No 155
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=30.25 E-value=18 Score=43.34 Aligned_cols=17 Identities=6% Similarity=0.221 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhhhhhh
Q 013026 275 IGFCCKVLIISLQPVSK 291 (451)
Q Consensus 275 I~fA~aiLk~A~~~i~~ 291 (451)
+.++-.+|+.+.+--+.
T Consensus 2115 LhY~hSLlRlanDEakD 2131 (3015)
T KOG0943|consen 2115 LHYAHSLLRLANDEAKD 2131 (3015)
T ss_pred HHHHHHHHHhccccccc
Confidence 56777777777664443
No 156
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=30.22 E-value=34 Score=38.96 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=8.1
Q ss_pred hhhhhhhhhhcCCCCC
Q 013026 9 ERETQNKEEEEGGGEG 24 (451)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (451)
.||+|+.|++|++.||
T Consensus 680 ~~~le~~~~~e~~~pE 695 (907)
T KOG4167|consen 680 SEELEELEEEEEEDPE 695 (907)
T ss_pred hhHHHHHHHhhccCcc
Confidence 3555555555544433
No 157
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.28 E-value=1.3e+02 Score=34.34 Aligned_cols=12 Identities=25% Similarity=0.388 Sum_probs=5.5
Q ss_pred CchhhhhhhcCc
Q 013026 26 GEEEVKDVEKGE 37 (451)
Q Consensus 26 ~~~~~~~~~~~~ 37 (451)
.+||.||.++++
T Consensus 328 ~~e~ee~~d~~~ 339 (948)
T KOG0577|consen 328 GPEEEEEADHYG 339 (948)
T ss_pred CCchhhhccccc
Confidence 334444455553
No 158
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=27.81 E-value=23 Score=35.00 Aligned_cols=26 Identities=38% Similarity=0.415 Sum_probs=10.4
Q ss_pred hhhhhhhhhhcCCCCCCCchhhhhhh
Q 013026 9 ERETQNKEEEEGGGEGGGEEEVKDVE 34 (451)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (451)
|.+.|-.+|-+.+++||+|||++++|
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
T PRK12766 60 EVSEETEAEVEDEGGEEEEEEDADVE 85 (232)
T ss_pred cccccccchhcccccchhhhhhhhhh
Confidence 33333333333333344444444444
No 159
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=27.77 E-value=41 Score=37.00 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=5.3
Q ss_pred ceeeeeeecCCC
Q 013026 38 VVVEEKVVDSNS 49 (451)
Q Consensus 38 ~~~~~~~~~~~~ 49 (451)
-.|.---+|.+.
T Consensus 168 k~Vsal~~Dp~G 179 (641)
T KOG0772|consen 168 KIVSALAVDPSG 179 (641)
T ss_pred eEEEEeeecCCC
Confidence 344444455443
No 160
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=27.76 E-value=26 Score=35.16 Aligned_cols=8 Identities=38% Similarity=0.792 Sum_probs=3.2
Q ss_pred chhhhhhh
Q 013026 27 EEEVKDVE 34 (451)
Q Consensus 27 ~~~~~~~~ 34 (451)
|.|.|+|+
T Consensus 209 ~~e~E~v~ 216 (303)
T KOG3064|consen 209 DAELEEVE 216 (303)
T ss_pred hhhhhhcc
Confidence 33344443
No 161
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=27.48 E-value=61 Score=37.02 Aligned_cols=13 Identities=38% Similarity=0.769 Sum_probs=8.7
Q ss_pred chhHHHhHHHHHH
Q 013026 410 DEFMFSCAHCCLR 422 (451)
Q Consensus 410 ~~~l~cc~~C~l~ 422 (451)
.++++-++.||+.
T Consensus 652 rEI~~VllhC~l~ 664 (822)
T KOG2141|consen 652 REIARVLLHCCLN 664 (822)
T ss_pred HHHHHHHHHHHhh
Confidence 4566677777765
No 162
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=27.38 E-value=4.3e+02 Score=26.28 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 013026 301 WMLGTGFLWMSFWIL 315 (451)
Q Consensus 301 ~~~iv~~~~~~~W~~ 315 (451)
..++++.+|+.++..
T Consensus 76 ~l~~~Gglwy~~lsl 90 (284)
T PF12805_consen 76 LLFLAGGLWYLLLSL 90 (284)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445556656555443
No 163
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.22 E-value=72 Score=33.47 Aligned_cols=34 Identities=3% Similarity=0.012 Sum_probs=22.0
Q ss_pred ccceeeeceeEEEEecCC--CchHHHHHHHHHhhcc
Q 013026 347 VVNLTVCRVISLYYILGM--QSSTQFCFQRALTQNL 380 (451)
Q Consensus 347 v~~vTIAGvva~WYF~~~--~~pv~~Sf~rA~t~sf 380 (451)
+....+-|.-+.|.|.+- +-.++.||+...+||-
T Consensus 245 I~~il~~g~~g~W~FPNL~eDvGfleSF~PLy~~~~ 280 (372)
T KOG2927|consen 245 ITWILTGGKHGFWLFPNLTEDVGFLESFKPLYEYHY 280 (372)
T ss_pred HHHHHhCCCCceEeccchhhhhhHHHhhcccccccC
Confidence 333445566778999652 3467788887776663
No 164
>KOG2654 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.90 E-value=57 Score=34.83 Aligned_cols=6 Identities=17% Similarity=0.313 Sum_probs=3.4
Q ss_pred cCcchh
Q 013026 142 SKKYTN 147 (451)
Q Consensus 142 ~~k~~D 147 (451)
++|-+|
T Consensus 173 prk~rd 178 (461)
T KOG2654|consen 173 PRKERD 178 (461)
T ss_pred cccccc
Confidence 445566
No 165
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=26.39 E-value=35 Score=39.23 Aligned_cols=7 Identities=43% Similarity=0.933 Sum_probs=2.7
Q ss_pred CCCCceE
Q 013026 73 PTNPLRI 79 (451)
Q Consensus 73 ~~~~~~~ 79 (451)
|..|+.+
T Consensus 922 ~~~~~~l 928 (1134)
T KOG0825|consen 922 PQLPLHL 928 (1134)
T ss_pred ccchhhh
Confidence 3334433
No 166
>PF15345 TMEM51: Transmembrane protein 51
Probab=26.29 E-value=78 Score=31.30 Aligned_cols=11 Identities=45% Similarity=0.435 Sum_probs=5.5
Q ss_pred ceeeeeeecCC
Q 013026 38 VVVEEKVVDSN 48 (451)
Q Consensus 38 ~~~~~~~~~~~ 48 (451)
+--.|.||.++
T Consensus 124 vPSYEEvv~s~ 134 (233)
T PF15345_consen 124 VPSYEEVVNSG 134 (233)
T ss_pred CCChHHHHhcC
Confidence 33445555554
No 167
>PLN03078 Putative tRNA pseudouridine synthase; Provisional
Probab=26.11 E-value=36 Score=37.41 Aligned_cols=10 Identities=40% Similarity=0.301 Sum_probs=5.4
Q ss_pred HHHHHHHHHH
Q 013026 151 LFLFVLHMIL 160 (451)
Q Consensus 151 ~iLFll~l~~ 160 (451)
+-=|++|.+=
T Consensus 363 GqSFmlhQIR 372 (513)
T PLN03078 363 GESFMLHQIR 372 (513)
T ss_pred ehhHHHHHHH
Confidence 4446666553
No 168
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=25.68 E-value=1.8e+02 Score=29.48 Aligned_cols=9 Identities=22% Similarity=0.368 Sum_probs=3.4
Q ss_pred EEEeCcccc
Q 013026 79 IVINGGRRV 87 (451)
Q Consensus 79 ~~~~~~~~~ 87 (451)
|++...+-.
T Consensus 133 ~~irkkeal 141 (274)
T PLN02983 133 LVIRKKEAL 141 (274)
T ss_pred EEEeccccc
Confidence 333333333
No 169
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=25.56 E-value=23 Score=40.84 Aligned_cols=7 Identities=14% Similarity=0.377 Sum_probs=0.0
Q ss_pred cCcchhH
Q 013026 142 SKKYTNK 148 (451)
Q Consensus 142 ~~k~~D~ 148 (451)
+.-|+|.
T Consensus 744 r~vy~d~ 750 (787)
T PF03115_consen 744 RNVYMDA 750 (787)
T ss_dssp -------
T ss_pred hhhHHhh
Confidence 4445553
No 170
>KOG4425 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.45 E-value=54 Score=35.80 Aligned_cols=10 Identities=30% Similarity=0.747 Sum_probs=3.8
Q ss_pred cCCCCCCCCC
Q 013026 88 TAPRIATPPP 97 (451)
Q Consensus 88 ~~~~~~~~~~ 97 (451)
++|.|+|-||
T Consensus 59 aspspsp~pp 68 (900)
T KOG4425|consen 59 ASPSPSPEPP 68 (900)
T ss_pred CCCCCCCCCC
Confidence 3443333333
No 171
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=25.12 E-value=6e+02 Score=24.17 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=10.8
Q ss_pred cCcchhHHHHHHHHHHHHHH
Q 013026 142 SKKYTNKISLFLFVLHMILA 161 (451)
Q Consensus 142 ~~k~~D~~f~iLFll~l~~~ 161 (451)
++.++..+..-|.+.-+.-.
T Consensus 32 ~~~fR~~LIl~L~~aD~~qa 51 (201)
T PF11710_consen 32 RRSFRHQLILNLLLADFIQA 51 (201)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 44566665555555554443
No 172
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=25.11 E-value=3.8e+02 Score=31.27 Aligned_cols=9 Identities=56% Similarity=0.955 Sum_probs=4.3
Q ss_pred hhhhhhhhH
Q 013026 381 GSACLGSLF 389 (451)
Q Consensus 381 GSIcfGSLI 389 (451)
|-|-+||++
T Consensus 501 GGv~l~s~~ 509 (774)
T PF03699_consen 501 GGVPLGSFF 509 (774)
T ss_pred CCCccCCHH
Confidence 345555544
No 173
>PHA03356 tegument protein UL11; Provisional
Probab=25.10 E-value=1.6e+02 Score=24.78 Aligned_cols=6 Identities=50% Similarity=0.850 Sum_probs=4.9
Q ss_pred ceEEEe
Q 013026 77 LRIVIN 82 (451)
Q Consensus 77 ~~~~~~ 82 (451)
||||++
T Consensus 52 lrvVTq 57 (93)
T PHA03356 52 LRVVTQ 57 (93)
T ss_pred ceEEec
Confidence 788877
No 174
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=25.07 E-value=5.5e+02 Score=30.52 Aligned_cols=27 Identities=11% Similarity=0.021 Sum_probs=14.9
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013026 190 VLKYLLPQVEAASLLSISLSFSWQKAV 216 (451)
Q Consensus 190 ~~~~~~~ll~~~~~vs~vlS~~wL~ll 216 (451)
..+..+-.+.-.++.++++.++.++++
T Consensus 325 ~i~~~i~~l~~~~~~g~~lv~~vl~lf 351 (1021)
T PF00873_consen 325 YIEESINNLISNLLIGIILVVLVLLLF 351 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhhhhhhh
Confidence 344434345566667777776555443
No 175
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=25.01 E-value=72 Score=32.55 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhH
Q 013026 252 GVGVCFIAFAIGNGLYACWVSQRI 275 (451)
Q Consensus 252 ~~gIv~lifaii~~ly~~~vr~RI 275 (451)
.++++++++++++++.+.|+++|-
T Consensus 263 iaalvllil~vvliiLYiWlyrrR 286 (295)
T TIGR01478 263 IAALVLIILTVVLIILYIWLYRRR 286 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466778888887775444655553
No 176
>PTZ00370 STEVOR; Provisional
Probab=24.91 E-value=70 Score=32.69 Aligned_cols=25 Identities=12% Similarity=0.200 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHH
Q 013026 252 GVGVCFIAFAIGNGLYACWVSQRIG 276 (451)
Q Consensus 252 ~~gIv~lifaii~~ly~~~vr~RI~ 276 (451)
.++++++++++++++.+.|+++|-+
T Consensus 259 iaalvllil~vvliilYiwlyrrRK 283 (296)
T PTZ00370 259 IAALVLLILAVVLIILYIWLYRRRK 283 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4667788888877754446565543
No 177
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=24.88 E-value=2.1e+02 Score=32.09 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=2.4
Q ss_pred Cccccc
Q 013026 83 GGRRVT 88 (451)
Q Consensus 83 ~~~~~~ 88 (451)
.+.|..
T Consensus 465 ~~~~~~ 470 (577)
T KOG4270|consen 465 PGQRSS 470 (577)
T ss_pred CccccC
Confidence 334443
No 178
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=24.76 E-value=82 Score=33.89 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=3.3
Q ss_pred hhcCCCCC
Q 013026 69 QTLNPTNP 76 (451)
Q Consensus 69 ~~~~~~~~ 76 (451)
+|||+-.|
T Consensus 345 ~qq~~q~~ 352 (483)
T KOG2546|consen 345 TQQNQQQP 352 (483)
T ss_pred hhhchhhH
Confidence 33444444
No 179
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=24.75 E-value=5.1e+02 Score=23.19 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=18.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013026 144 KYTNKISLFLFVLHMILAIGLVGFLVFKG 172 (451)
Q Consensus 144 k~~D~~f~iLFll~l~~~~~~v~~l~~~g 172 (451)
.++|.=-.+..++|++.+++.+++.+|.+
T Consensus 71 ~~k~~~~qls~v~Nilvsv~~~~~~~~~~ 99 (142)
T PF11712_consen 71 ELKSVKRQLSTVFNILVSVFAVFFAGWYW 99 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35565666777777777766666666543
No 180
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=24.73 E-value=1.3e+03 Score=28.31 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHHH
Q 013026 252 GVGVCFIAFAIGNG 265 (451)
Q Consensus 252 ~~gIv~lifaii~~ 265 (451)
.+..+.+++++...
T Consensus 1019 aVS~vnLimsIGis 1032 (1145)
T TIGR00918 1019 AIPVVILIASVGIG 1032 (1145)
T ss_pred HHHHHHHHHHHhhh
Confidence 45566666665543
No 181
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=24.62 E-value=5.4e+02 Score=30.86 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 013026 198 VEAASLLSISLSFSWQ 213 (451)
Q Consensus 198 l~~~~~vs~vlS~~wL 213 (451)
+....++++++.++.+
T Consensus 340 ~~~~~~~a~~lv~lvl 355 (1044)
T TIGR00915 340 VVHTLIEAIVLVFLVM 355 (1044)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344445555554443
No 182
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=24.53 E-value=22 Score=37.95 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=12.1
Q ss_pred hhcCCCCCceEEEeCcccccCCC
Q 013026 69 QTLNPTNPLRIVINGGRRVTAPR 91 (451)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~ 91 (451)
|+-=|.+.|.-.+-.|+++-+|+
T Consensus 384 q~VP~~~~L~~~~P~Gr~i~~~~ 406 (413)
T cd09245 384 QPVPPSSELQSSMPSGREAHTAK 406 (413)
T ss_pred ecCCChHhhhhcCCCcccccCCC
Confidence 44444455544455666666554
No 183
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.36 E-value=1.5e+02 Score=34.81 Aligned_cols=13 Identities=23% Similarity=0.130 Sum_probs=4.9
Q ss_pred CCCcCCcccchhh
Q 013026 57 NGEQRGFNASMMQ 69 (451)
Q Consensus 57 ~~~~~~~~~~~~~ 69 (451)
+|...+-.+.-||
T Consensus 20 ~~g~~~~~a~~~~ 32 (1007)
T KOG1984|consen 20 YGGSSNSLAQAMP 32 (1007)
T ss_pred CCCCCchhhhhcc
Confidence 3333333333333
No 184
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=24.21 E-value=34 Score=35.04 Aligned_cols=9 Identities=11% Similarity=0.183 Sum_probs=3.7
Q ss_pred HHHHhhhHH
Q 013026 215 AVRVWPKFM 223 (451)
Q Consensus 215 llr~~a~~l 223 (451)
++.+..|.+
T Consensus 276 Il~~ptkvl 284 (378)
T KOG1996|consen 276 ILKCPTKVL 284 (378)
T ss_pred HHhcchHHH
Confidence 334444443
No 185
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=24.14 E-value=1e+02 Score=36.27 Aligned_cols=9 Identities=44% Similarity=0.892 Sum_probs=3.7
Q ss_pred CCCcCCccc
Q 013026 57 NGEQRGFNA 65 (451)
Q Consensus 57 ~~~~~~~~~ 65 (451)
|+|..|++.
T Consensus 948 n~e~~~~~~ 956 (1258)
T KOG1053|consen 948 NGEEDGLGD 956 (1258)
T ss_pred cCccccccc
Confidence 334444444
No 186
>PHA03171 UL37 tegument protein; Provisional
Probab=24.02 E-value=25 Score=37.31 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=7.6
Q ss_pred hhcchhhhhhhhHHH
Q 013026 377 TQNLGSACLGSLFVP 391 (451)
Q Consensus 377 t~sfGSIcfGSLIVa 391 (451)
+--+||+++=||+.-
T Consensus 452 sVaaGsiaLLsLFCi 466 (499)
T PHA03171 452 SAAAGSIAILSLFCI 466 (499)
T ss_pred HHHHhHHHHHHHHHH
Confidence 344555555555543
No 187
>cd05830 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5 represented by Streptomyces avermitilis SAV4337. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=23.74 E-value=74 Score=28.33 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=42.5
Q ss_pred hhhhhcCcceeeeeeec-CCCcccccCcCCCcCCcccchhhhcCCCCCceEEEeCcc
Q 013026 30 VKDVEKGEVVVEEKVVD-SNSNVNINNINGEQRGFNASMMQTLNPTNPLRIVINGGR 85 (451)
Q Consensus 30 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (451)
.+..+.|-+..++...- .+.|.-|-+||+.+ |.+-+.|.++.+-+.+.+...++.
T Consensus 25 ~~~L~~g~g~~~~s~~pG~~gn~viaGH~~~~-~~~F~~L~~l~~Gd~i~v~~~~~~ 80 (137)
T cd05830 25 TEVLNQGVGHYPETAMPGEVGNFAVAGHRTTY-GAPFNDLDKLRPGDKIVVETADGW 80 (137)
T ss_pred HHHHhcCcEEecCCCCCCCCCcEEEEecCCCC-CcccccHhhCCCCCEEEEEECCeE
Confidence 35566676666655443 37899999999987 678999999999999988877665
No 188
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=23.60 E-value=1.2e+02 Score=30.23 Aligned_cols=7 Identities=29% Similarity=0.316 Sum_probs=3.1
Q ss_pred hhhhcCC
Q 013026 67 MMQTLNP 73 (451)
Q Consensus 67 ~~~~~~~ 73 (451)
+.|.+.|
T Consensus 145 ~~~~~~p 151 (261)
T KOG3294|consen 145 YGQSAAP 151 (261)
T ss_pred ccccccC
Confidence 4444444
No 189
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=23.51 E-value=44 Score=38.12 Aligned_cols=6 Identities=0% Similarity=0.395 Sum_probs=2.8
Q ss_pred eEEEEe
Q 013026 356 ISLYYI 361 (451)
Q Consensus 356 va~WYF 361 (451)
.|.||-
T Consensus 567 kGrWWl 572 (822)
T KOG2141|consen 567 KGRWWL 572 (822)
T ss_pred cCceEE
Confidence 345554
No 190
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=23.48 E-value=7.6e+02 Score=24.73 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=9.2
Q ss_pred hhhhcccchhhHHHHHHHHH
Q 013026 288 PVSKFSDLNQPTYWMLGTGF 307 (451)
Q Consensus 288 ~i~~~p~l~lv~~~~~iv~~ 307 (451)
++++.-.-++.+-+++++++
T Consensus 243 a~~~~g~~i~~s~ltt~~gf 262 (333)
T PF03176_consen 243 AVRSTGRAILLSALTTAIGF 262 (333)
T ss_pred HHhccCchhHHHHHHHHHHH
Confidence 55555444444444444444
No 191
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=23.31 E-value=6.9e+02 Score=25.29 Aligned_cols=10 Identities=20% Similarity=0.189 Sum_probs=4.5
Q ss_pred HHHHHHhhhH
Q 013026 213 QKAVRVWPKF 222 (451)
Q Consensus 213 L~llr~~a~~ 222 (451)
.++.|+.|+.
T Consensus 205 ~~ly~~lP~~ 214 (303)
T COG1295 205 FLLYRFLPNV 214 (303)
T ss_pred HHHHHHcCCc
Confidence 3444444444
No 192
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=23.27 E-value=8.3e+02 Score=30.43 Aligned_cols=35 Identities=6% Similarity=0.047 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 013026 200 AASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFL 234 (451)
Q Consensus 200 ~~~~vs~vlS~~wL~llr~~a~~lV~~~ii~~~il 234 (451)
.+.++++++-++++.+.-.+.+.+.-+++.+.+++
T Consensus 913 lA~lIglaLVlIFMlL~YRf~GliA~IALll~Vll 947 (1403)
T PRK12911 913 ISVCLGLAVLIVLMSVYYRFGGVIASGAVLLNLLL 947 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34455555555555555555555544444444333
No 193
>PRK12438 hypothetical protein; Provisional
Probab=23.25 E-value=1.2e+03 Score=27.97 Aligned_cols=174 Identities=10% Similarity=-0.029 Sum_probs=0.0
Q ss_pred CCCCCCCCCcccccccccCcchhHHHHHHHHHHHHHH-HHHHHHHHhhccccccccccccccchhhhHhhhHHHHHHHHH
Q 013026 125 PPAPTPTPQQASRTALNSKKYTNKISLFLFVLHMILA-IGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASL 203 (451)
Q Consensus 125 ~~~~~~~~~q~~l~~~~~~k~~D~~f~iLFll~l~~~-~~~v~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 203 (451)
+-|.||++.+.. +++-+=.+.++++++.++++ ..++.+++=.-+-+.....+. +..+-+..+.+...+
T Consensus 1 ~~~~~~~~~p~~-----~~r~~~l~~~~~~~~~l~~~~~~~~~~~td~lWf~~lgy~~V------f~t~l~tr~~Lf~~~ 69 (991)
T PRK12438 1 MEMGPPGKRPVL-----PKRARLLVTAGMGMLALLLFGPRLVDIYTDWLWFGEVGFRSV------WITVLLTRLALFAAV 69 (991)
T ss_pred CCCCCCCCCCCC-----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcee------hhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH--HHHHHHhhhHH---------------------HHHHHHHHHHHHHHHHhhheeeecC------------
Q 013026 204 LSISLSFSW--QKAVRVWPKFM---------------------VHFILWSSFFLSLSAGILLICFQKP------------ 248 (451)
Q Consensus 204 vs~vlS~~w--L~llr~~a~~l---------------------V~~~ii~~~il~l~~~i~~~~~~~~------------ 248 (451)
..++..++| +++....--.+ -++.+.+.+++++.+|...--.|..
T Consensus 70 ~~~~~~~v~~~~~la~r~rp~~~~~~~~~~~l~~y~~~i~~~~~~~~~~v~~~~gl~~g~~~~~~W~~~Llfln~~~FG~ 149 (991)
T PRK12438 70 ALVVGGIVLAALLLAYRSRPFFVPDEPQRDPVARYRSAVMRRPRLFGWGIAVTLGVVCGLIAQFDWVTVQLFVHGGTFGI 149 (991)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCccccccchHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCCCC
Q ss_pred --------------------CcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccchhhHHHHHHHHHH
Q 013026 249 --------------------ATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFL 308 (451)
Q Consensus 249 --------------------~~~~~gIv~lifaii~~ly~~~vr~RI~fA~aiLk~A~~~i~~~p~l~lv~~~~~iv~~~ 308 (451)
......+..++++++..+...++...|++.-. -...++..+.+-+++...++++...--
T Consensus 150 ~DP~Fg~DigFYvF~LPf~~~l~~~l~~~~~~~~i~~~~~~yl~g~irl~~~-~~~~s~~ar~hL~vl~~~~~ll~A~~y 228 (991)
T PRK12438 150 VDPEFGYDIGFYVFDLPFYRSVLNWLFVAVVLAFLASLLTHYLFGGLRLTTG-RGMLTQAARVQLAVFAGAFVLLKAVAY 228 (991)
T ss_pred CCCCCCCcceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC-cccCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 013026 309 WM 310 (451)
Q Consensus 309 ~~ 310 (451)
|+
T Consensus 229 wL 230 (991)
T PRK12438 229 WL 230 (991)
T ss_pred HH
No 194
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=23.11 E-value=1.1e+02 Score=28.25 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhccc
Q 013026 252 GVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSD 294 (451)
Q Consensus 252 ~~gIv~lifaii~~ly~~~vr~RI~fA~aiLk~A~~~i~~~p~ 294 (451)
.++|+.+++-++.++|+|. +++-+-++++-|+..+++.-+-.
T Consensus 35 LiaIvVliiiiivli~lcs-sRKkKaaAAi~eediQfinpyqD 76 (189)
T PF05568_consen 35 LIAIVVLIIIIIVLIYLCS-SRKKKAAAAIEEEDIQFINPYQD 76 (189)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhhHHHHhhhhhhcccccCcccc
Confidence 3455555555555568877 34445567777887777655544
No 195
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=23.09 E-value=28 Score=37.45 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=0.0
Q ss_pred CCCcchhhhhhhhhhhcCCCCCCCchhhhhhh
Q 013026 3 ASDPVVERETQNKEEEEGGGEGGGEEEVKDVE 34 (451)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (451)
++-+|+ |-+||.|.+-+--+|+||.+|+|++
T Consensus 506 ~sl~Gl-~~lEK~~~~~DATdE~D~~~V~D~~ 536 (564)
T KOG1174|consen 506 RTLRGL-RLLEKSDDESDATDESDQQSVNDLT 536 (564)
T ss_pred HHHHHH-HHHHhccCCCCccccccccchhhcc
No 196
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=22.98 E-value=7.9e+02 Score=30.18 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHH
Q 013026 252 GVGVCFIAFAIGNG 265 (451)
Q Consensus 252 ~~gIv~lifaii~~ 265 (451)
.+.++.+++++...
T Consensus 1103 ~vSlv~Li~avGis 1116 (1204)
T TIGR00917 1103 AVSVVNLVMAKGIS 1116 (1204)
T ss_pred HHHHHHHHHHhhhH
Confidence 45566666665544
No 197
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=22.93 E-value=38 Score=37.44 Aligned_cols=28 Identities=4% Similarity=-0.075 Sum_probs=21.7
Q ss_pred HhhhhHHHHHHHHHHhhhhhhhcccchh
Q 013026 270 WVSQRIGFCCKVLIISLQPVSKFSDLNQ 297 (451)
Q Consensus 270 ~vr~RI~fA~aiLk~A~~~i~~~p~l~l 297 (451)
|...-.+-+..+-+++.++-++-|--++
T Consensus 263 wt~sGyDa~~H~aEE~~nAsk~aPrgIi 290 (550)
T KOG1289|consen 263 WTMSGYDAAAHMAEETKNASKAAPRGII 290 (550)
T ss_pred eEEeccCchHHHHHHhcchhhhccHHHH
Confidence 4457788899999999888888776554
No 198
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=22.65 E-value=35 Score=29.11 Aligned_cols=6 Identities=17% Similarity=0.567 Sum_probs=2.5
Q ss_pred hhhhhc
Q 013026 14 NKEEEE 19 (451)
Q Consensus 14 ~~~~~~ 19 (451)
.+|.++
T Consensus 51 qqe~~~ 56 (96)
T PF15387_consen 51 QQEAQD 56 (96)
T ss_pred HHhhcc
Confidence 344443
No 199
>PF14816 FAM178: Family of unknown function, FAM178
Probab=22.39 E-value=24 Score=37.31 Aligned_cols=10 Identities=20% Similarity=0.381 Sum_probs=4.5
Q ss_pred ccCcCCCcCC
Q 013026 53 INNINGEQRG 62 (451)
Q Consensus 53 ~~~~~~~~~~ 62 (451)
.+.|-+-|+|
T Consensus 78 ~~~Ip~~HPG 87 (377)
T PF14816_consen 78 LQAIPDVHPG 87 (377)
T ss_pred hccCCCCCCc
Confidence 3444444444
No 200
>PF13796 Sensor: Putative sensor
Probab=22.35 E-value=6.1e+02 Score=23.25 Aligned_cols=13 Identities=15% Similarity=0.350 Sum_probs=9.6
Q ss_pred ccCcchhHHHHHH
Q 013026 141 NSKKYTNKISLFL 153 (451)
Q Consensus 141 ~~~k~~D~~f~iL 153 (451)
++..|+|..|..+
T Consensus 85 d~~tWR~l~~~~l 97 (181)
T PF13796_consen 85 DPATWRDLAYLLL 97 (181)
T ss_pred CcchHHHHHHHHH
Confidence 4667999977655
No 201
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=22.22 E-value=40 Score=40.20 Aligned_cols=33 Identities=6% Similarity=0.095 Sum_probs=18.2
Q ss_pred ccccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013026 139 ALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKG 172 (451)
Q Consensus 139 ~~~~~k~~D~~f~iLFll~l~~~~~~v~~l~~~g 172 (451)
|+-+=++.|.-++..|-=+-.++ ..|-+..+++
T Consensus 210 risPF~feDFcaAL~~~~~ssLl-aeVHvaLLrA 242 (1414)
T KOG1473|consen 210 RISPFRFEDFCAALISHEQSSLL-AEVHVALLRA 242 (1414)
T ss_pred EeCCccHHHHHHHHHhcCchhHH-HHHHHHHHHH
Confidence 33455788877777775544442 4444444433
No 202
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=22.19 E-value=32 Score=37.74 Aligned_cols=15 Identities=13% Similarity=0.242 Sum_probs=7.5
Q ss_pred CCCCCcccccccccC
Q 013026 129 TPTPQQASRTALNSK 143 (451)
Q Consensus 129 ~~~~~q~~l~~~~~~ 143 (451)
+||+|+..+.+....
T Consensus 350 ~p~~~~dkl~~~s~n 364 (653)
T KOG2548|consen 350 SPPSQSDKLSRPSPN 364 (653)
T ss_pred CCCcccccccCCCcc
Confidence 345555555555443
No 203
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=22.00 E-value=8e+02 Score=27.81 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=9.9
Q ss_pred hhhcCCCCCceEEEe
Q 013026 68 MQTLNPTNPLRIVIN 82 (451)
Q Consensus 68 ~~~~~~~~~~~~~~~ 82 (451)
+-+.|-.+|+-|+..
T Consensus 351 ~T~~nvgk~~Aivl~ 365 (604)
T PRK12933 351 FSRDNIGKPMATSYS 365 (604)
T ss_pred HHHHhcCCceEEEEe
Confidence 334577778777774
No 204
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.59 E-value=34 Score=38.80 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=12.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHH
Q 013026 191 LKYLLPQVEAASLLSISLSFS 211 (451)
Q Consensus 191 ~~~~~~ll~~~~~vs~vlS~~ 211 (451)
-|..+|++-+...++..+.-.
T Consensus 576 DKdLfPLLEClSsia~AL~~g 596 (885)
T KOG2023|consen 576 DKDLFPLLECLSSIASALGVG 596 (885)
T ss_pred cchHHHHHHHHHHHHHHHhcc
Confidence 345677777666666555543
No 205
>PF01056 Myc_N: Myc amino-terminal region; InterPro: IPR012682 The class III basic helix-turn-helix (bHLH) transcription factors have proliferative and apoptotic roles and are characterised by the presence of a leucine zipper adjacent to the bHLH domain. The myc oncogene gene was first discovered in small-cell lung cancer cell lines where it is found to be deregulated []. Although the biochemical function of the gene product is unknown, as a nuclear protein with a short half-life it may play a direct or indirect role in controlling gene expression []. Myc forms a heterodimer with Max, and this complex regulates cell growth through direct activation of genes involved in cell replication []. This entry represents the N-terminal domain found adjacent to the basic helix-loop-helix (bHLH) region (IPR001092 from INTERPRO).; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1EE4_C.
Probab=21.57 E-value=31 Score=35.85 Aligned_cols=10 Identities=50% Similarity=0.491 Sum_probs=0.0
Q ss_pred hcCcceeeee
Q 013026 34 EKGEVVVEEK 43 (451)
Q Consensus 34 ~~~~~~~~~~ 43 (451)
|+=+||--||
T Consensus 242 EEIDVVTVEk 251 (329)
T PF01056_consen 242 EEIDVVTVEK 251 (329)
T ss_dssp ----------
T ss_pred cceEEEEeee
Confidence 3334443343
No 206
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=21.40 E-value=1.4e+03 Score=26.95 Aligned_cols=26 Identities=23% Similarity=0.237 Sum_probs=20.4
Q ss_pred HHHHHHHHhhcchhhhhhhhHHHHHH
Q 013026 369 QFCFQRALTQNLGSACLGSLFVPTIE 394 (451)
Q Consensus 369 ~~Sf~rA~t~sfGSIcfGSLIVaiI~ 394 (451)
..-++++++.-+--|++|.+++++++
T Consensus 699 ~~~irrqLs~dlw~I~l~~flI~I~E 724 (800)
T TIGR00934 699 GAHLRRQLSFDLWYIFLGLFIICICE 724 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34577788777888899999988876
No 207
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=21.34 E-value=6.9e+02 Score=28.68 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 013026 303 LGTGFLWMSFWI 314 (451)
Q Consensus 303 ~iv~~~~~~~W~ 314 (451)
++++.+|+.+|.
T Consensus 136 ll~GalwY~l~s 147 (701)
T TIGR01667 136 ILAGTLWYGLLT 147 (701)
T ss_pred HHHHHHHHHHHH
Confidence 344666655544
No 208
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=21.31 E-value=8.7e+02 Score=24.67 Aligned_cols=18 Identities=28% Similarity=0.709 Sum_probs=11.8
Q ss_pred hh-HHHHHHHHHHH-HHHHh
Q 013026 328 LI-IIALVLSLAWT-TEVMR 345 (451)
Q Consensus 328 ~~-i~~~lfsl~Wt-~~vi~ 345 (451)
|. .++++..+.|. .|++|
T Consensus 247 W~~AfGL~vTLVWLYlEILR 266 (274)
T PF12811_consen 247 WYAAFGLLVTLVWLYLEILR 266 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 53 36688888887 45544
No 209
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.19 E-value=2.1e+02 Score=30.28 Aligned_cols=10 Identities=30% Similarity=0.175 Sum_probs=5.1
Q ss_pred hhhhhcccch
Q 013026 287 QPVSKFSDLN 296 (451)
Q Consensus 287 ~~i~~~p~l~ 296 (451)
+++..||.++
T Consensus 262 ~~vq~NP~~L 271 (378)
T TIGR00601 262 QVVQQNPQLL 271 (378)
T ss_pred HHHHHCHHHH
Confidence 3445566543
No 210
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=20.89 E-value=51 Score=37.76 Aligned_cols=12 Identities=8% Similarity=0.348 Sum_probs=5.8
Q ss_pred hhhhcCCC-CCce
Q 013026 67 MMQTLNPT-NPLR 78 (451)
Q Consensus 67 ~~~~~~~~-~~~~ 78 (451)
|+|.|.=+ +|+.
T Consensus 299 lih~LSis~~~I~ 311 (893)
T KOG0291|consen 299 LIHSLSISDQKIL 311 (893)
T ss_pred EEEEeecccceee
Confidence 45555544 4443
No 211
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=20.59 E-value=1.6e+02 Score=32.67 Aligned_cols=12 Identities=33% Similarity=0.274 Sum_probs=5.2
Q ss_pred cchhhhhhhhhh
Q 013026 6 PVVERETQNKEE 17 (451)
Q Consensus 6 ~~~~~~~~~~~~ 17 (451)
++-|||-+..|+
T Consensus 311 e~Rerer~vd~~ 322 (694)
T KOG4264|consen 311 EQRERERTVDES 322 (694)
T ss_pred hhhccccccccc
Confidence 334444444444
No 212
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=20.52 E-value=7.3e+02 Score=25.22 Aligned_cols=41 Identities=27% Similarity=0.232 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 013026 200 AASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGIL 241 (451)
Q Consensus 200 ~~~~vs~vlS~~wL~llr~~a~~lV~~~ii~~~il~l~~~i~ 241 (451)
+.++++++++++=-.- +.--+..||......++++++.+..
T Consensus 18 A~LIV~illa~L~k~~-~~~~~~~V~~G~~~gl~~s~~~a~~ 58 (283)
T TIGR00145 18 AALVVSVLLSYLKRAQ-RTRLRGWVWVGVLAGFAACLAIGIG 58 (283)
T ss_pred HHHHHHHHHHHHHhcC-ccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4445555555442211 1222446666666666666554443
No 213
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=20.41 E-value=45 Score=35.83 Aligned_cols=19 Identities=5% Similarity=0.024 Sum_probs=8.1
Q ss_pred hcCCCCCCCchhhhhhhcC
Q 013026 18 EEGGGEGGGEEEVKDVEKG 36 (451)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~ 36 (451)
.++++++++++|+||-+.+
T Consensus 329 ~~~~~~~~~~~~~e~~~~~ 347 (429)
T PF03348_consen 329 FNEDRDQADRADVEEGSLP 347 (429)
T ss_pred cccccccccccchhccccC
Confidence 3444444444444444333
No 214
>PF08595 RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904 The entry represents the N-terminal region of RXT2-like proteins. In Saccharomyces cerevisiae (Baker's yeast), RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth []. A high throughput localisation study has localised RXT2 to the nucleus [].
Probab=20.28 E-value=27 Score=32.23 Aligned_cols=7 Identities=0% Similarity=0.112 Sum_probs=2.8
Q ss_pred CCCcccc
Q 013026 47 SNSNVNI 53 (451)
Q Consensus 47 ~~~~~~~ 53 (451)
-.++++|
T Consensus 84 P~~~i~l 90 (149)
T PF08595_consen 84 PYKLIRL 90 (149)
T ss_pred chhhccH
Confidence 3344443
No 215
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=20.28 E-value=1.3e+02 Score=30.98 Aligned_cols=15 Identities=7% Similarity=0.175 Sum_probs=6.5
Q ss_pred HHHhHHHHHHHHHHH
Q 013026 413 MFSCAHCCLRIMESI 427 (451)
Q Consensus 413 l~cc~~C~l~cle~~ 427 (451)
+.-++.=++++|+.+
T Consensus 347 ~~~iakPlf~lL~~~ 361 (366)
T TIGR03593 347 LWFIAKPLFWLLDFF 361 (366)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 216
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=20.22 E-value=53 Score=35.16 Aligned_cols=21 Identities=29% Similarity=0.662 Sum_probs=11.4
Q ss_pred hhhhhhhhhhcCCCCCCCchh
Q 013026 9 ERETQNKEEEEGGGEGGGEEE 29 (451)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~ 29 (451)
+|+-+++|+++.+++||||||
T Consensus 3 ~~~r~r~~~~~se~~de~d~d 23 (610)
T KOG0341|consen 3 DRRRKRQEEEDSEGDDEDDED 23 (610)
T ss_pred chhhhhhhhhccccccccccc
Confidence 355566666665555544443
No 217
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=20.20 E-value=53 Score=36.34 Aligned_cols=6 Identities=33% Similarity=0.379 Sum_probs=2.6
Q ss_pred hhhHHH
Q 013026 272 SQRIGF 277 (451)
Q Consensus 272 r~RI~f 277 (451)
|.||..
T Consensus 425 Rer~~~ 430 (678)
T KOG0127|consen 425 RERIAE 430 (678)
T ss_pred HHHHHH
Confidence 445433
No 218
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=20.04 E-value=4.8e+02 Score=21.11 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhheeeecCC--cchhHHHHHHHHHHH
Q 013026 205 SISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPA--TDGVGVCFIAFAIGN 264 (451)
Q Consensus 205 s~vlS~~wL~llr~~a~~lV~~~ii~~~il~l~~~i~~~~~~~~~--~~~~gIv~lifaii~ 264 (451)
..+-.+.|...+++..-..+-...-+.++++...+...+ ..+- .-+.|++..+.+++.
T Consensus 64 ~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~--~e~~~~~~~~g~~l~~~g~~l 123 (126)
T PF00892_consen 64 TALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFL--GERPSWRQIIGIILIIIGVVL 123 (126)
T ss_pred eehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHHHH
Confidence 355556677777777666655556666666666664433 1211 124566655555543
Done!