Query 013026
Match_columns 451
No_of_seqs 201 out of 592
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 20:50:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013026.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013026hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 71.3 0.97 3.3E-05 39.7 0.5 7 124-130 129-135 (138)
2 2dvj_A V-CRK sarcoma virus CT1 70.9 5.3 0.00018 37.3 5.5 8 32-39 154-161 (230)
3 1pk8_A RAT synapsin I; ATP bin 65.5 1.3 4.4E-05 45.9 0.0 11 422-432 406-416 (422)
4 1uff_A Intersectin 2; beta bar 60.5 8.8 0.0003 30.5 4.2 8 32-39 23-30 (93)
5 1jvr_A HTLV-II MA, MA, human T 54.6 22 0.00075 30.3 5.7 11 65-75 66-76 (137)
6 1pk8_A RAT synapsin I; ATP bin 47.4 4 0.00014 42.2 0.0 7 68-74 26-32 (422)
7 2iu1_A EIF5, eukaryotic transl 39.2 8.6 0.00029 35.9 0.9 11 46-56 190-200 (208)
8 4hyg_A Putative uncharacterize 32.4 3.7E+02 0.013 26.3 17.5 34 203-236 52-85 (301)
9 3um7_A Potassium channel subfa 30.5 28 0.00095 34.3 3.0 10 253-262 145-154 (309)
10 2v50_A Multidrug resistance pr 26.7 5.5E+02 0.019 28.9 13.3 15 200-214 342-356 (1052)
11 2iu1_A EIF5, eukaryotic transl 24.0 21 0.00071 33.2 0.7 8 13-20 152-159 (208)
12 3tnp_B CAMP-dependent protein 23.4 17 0.00058 36.6 0.0 8 350-357 313-320 (416)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=71.26 E-value=0.97 Score=39.72 Aligned_cols=7 Identities=43% Similarity=0.990 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 013026 124 SPPAPTP 130 (451)
Q Consensus 124 ~~~~~~~ 130 (451)
+|.||||
T Consensus 129 ~~~~~~~ 135 (138)
T 1jer_A 129 PPVMPPP 135 (138)
T ss_dssp -------
T ss_pred CCCCCCC
Confidence 3444433
No 2
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A
Probab=70.90 E-value=5.3 Score=37.27 Aligned_cols=8 Identities=25% Similarity=0.750 Sum_probs=4.8
Q ss_pred hhhcCcce
Q 013026 32 DVEKGEVV 39 (451)
Q Consensus 32 ~~~~~~~~ 39 (451)
..++|+.+
T Consensus 154 sf~~Gd~i 161 (230)
T 2dvj_A 154 PFKKGDIL 161 (230)
T ss_dssp CCCSSCBC
T ss_pred cCcCCCEE
Confidence 46777653
No 3
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=65.48 E-value=1.3 Score=45.86 Aligned_cols=11 Identities=18% Similarity=0.081 Sum_probs=5.1
Q ss_pred HHHHHHHHHhh
Q 013026 422 RIMESIFRCGN 432 (451)
Q Consensus 422 ~cle~~i~y~N 432 (451)
.+.+.++++++
T Consensus 406 ~IA~~ii~~i~ 416 (422)
T 1pk8_A 406 LIVELVVNKMT 416 (422)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444555444
No 4
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=60.50 E-value=8.8 Score=30.50 Aligned_cols=8 Identities=13% Similarity=0.713 Sum_probs=4.9
Q ss_pred hhhcCcce
Q 013026 32 DVEKGEVV 39 (451)
Q Consensus 32 ~~~~~~~~ 39 (451)
..++|+.+
T Consensus 23 sf~~Gd~i 30 (93)
T 1uff_A 23 SFNSGDII 30 (93)
T ss_dssp CBCTTCEE
T ss_pred CCCCCCEE
Confidence 56677653
No 5
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=54.63 E-value=22 Score=30.35 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=4.7
Q ss_pred cchhhhcCCCC
Q 013026 65 ASMMQTLNPTN 75 (451)
Q Consensus 65 ~~~~~~~~~~~ 75 (451)
-|.|-.|=|.+
T Consensus 66 YSlLA~LiPkg 76 (137)
T 1jvr_A 66 YSLLASLIPKG 76 (137)
T ss_dssp TTTHHHHSCSS
T ss_pred HHHHHhhccCC
Confidence 34444444443
No 6
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=47.37 E-value=4 Score=42.22 Aligned_cols=7 Identities=29% Similarity=0.543 Sum_probs=0.0
Q ss_pred hhhcCCC
Q 013026 68 MQTLNPT 74 (451)
Q Consensus 68 ~~~~~~~ 74 (451)
|||-+|+
T Consensus 26 ~~~~~~~ 32 (422)
T 1pk8_A 26 LQRPQPP 32 (422)
T ss_dssp -------
T ss_pred cCCCCCC
Confidence 4554433
No 7
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=39.17 E-value=8.6 Score=35.90 Aligned_cols=11 Identities=18% Similarity=0.679 Sum_probs=0.0
Q ss_pred cCCCcccccCc
Q 013026 46 DSNSNVNINNI 56 (451)
Q Consensus 46 ~~~~~~~~~~~ 56 (451)
|....++|+.|
T Consensus 190 ~~~~d~di~~~ 200 (208)
T 2iu1_A 190 NKDDDIDIDAI 200 (208)
T ss_dssp -----------
T ss_pred cccccccHHHH
Confidence 33445666654
No 8
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=32.41 E-value=3.7e+02 Score=26.32 Aligned_cols=34 Identities=6% Similarity=0.148 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 013026 203 LLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSL 236 (451)
Q Consensus 203 ~vs~vlS~~wL~llr~~a~~lV~~~ii~~~il~l 236 (451)
+.-++++.+.+.++|+--+.+++..+.++...+.
T Consensus 52 ~~ILvfT~~mL~l~k~~~~~ii~~ii~~~i~~~~ 85 (301)
T 4hyg_A 52 GMLLAFTLVLLVLLRTGGRRFIAAFIGFALFMTF 85 (301)
T ss_dssp HHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 3445667788889998888888777766555444
No 9
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=30.54 E-value=28 Score=34.35 Aligned_cols=10 Identities=10% Similarity=0.272 Sum_probs=4.2
Q ss_pred hHHHHHHHHH
Q 013026 253 VGVCFIAFAI 262 (451)
Q Consensus 253 ~gIv~lifai 262 (451)
++++..++++
T Consensus 145 ~~i~~~l~Gi 154 (309)
T 3um7_A 145 FCIFYALVGI 154 (309)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 10
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=26.70 E-value=5.5e+02 Score=28.88 Aligned_cols=15 Identities=20% Similarity=-0.084 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 013026 200 AASLLSISLSFSWQK 214 (451)
Q Consensus 200 ~~~~vs~vlS~~wL~ 214 (451)
...++++++.++.++
T Consensus 342 ~~~~~~~~lv~lvl~ 356 (1052)
T 2v50_A 342 KTLGEAILLVFLVMY 356 (1052)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445444444433
No 11
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=24.04 E-value=21 Score=33.25 Aligned_cols=8 Identities=38% Similarity=0.559 Sum_probs=3.3
Q ss_pred hhhhhhcC
Q 013026 13 QNKEEEEG 20 (451)
Q Consensus 13 ~~~~~~~~ 20 (451)
|+-||++.
T Consensus 152 ~EAEEEs~ 159 (208)
T 2iu1_A 152 KEAEEESS 159 (208)
T ss_dssp HCSSCCCC
T ss_pred Hccccccc
Confidence 33444443
No 12
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=23.45 E-value=17 Score=36.63 Aligned_cols=8 Identities=0% Similarity=0.057 Sum_probs=3.2
Q ss_pred eeeeceeE
Q 013026 350 LTVCRVIS 357 (451)
Q Consensus 350 vTIAGvva 357 (451)
++.+|.+.
T Consensus 313 iI~sG~v~ 320 (416)
T 3tnp_B 313 IVESGEVK 320 (416)
T ss_dssp EEEEEEEE
T ss_pred EEEeCEEE
Confidence 33444433
Done!