Query 013026
Match_columns 451
No_of_seqs 201 out of 592
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 20:50:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013026.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013026hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uffa_ b.34.2.1 (A:) Intersec 39.2 12 0.00084 27.8 3.6 41 31-72 22-63 (93)
2 d1t2wa_ b.100.1.1 (A:) Sortase 23.9 17 0.0012 29.2 2.2 56 30-85 33-89 (145)
3 d2e9xd2 d.344.1.3 (D:166-223) 20.4 11 0.00083 26.3 0.3 17 21-37 20-37 (58)
4 d2j01h2 d.141.1.1 (H:83-171) R 16.2 23 0.0016 26.8 1.2 33 45-77 43-75 (89)
5 d1kqfb2 f.23.22.1 (B:246-290) 11.7 32 0.0024 22.8 0.8 10 18-27 35-44 (45)
6 d1rtya_ a.25.2.2 (A:) Putative 10.1 1.5E+02 0.011 24.0 4.8 35 386-433 94-134 (161)
7 d1uk5a_ a.7.7.1 (A:) BAG-famil 9.2 72 0.0052 24.8 2.2 21 112-132 7-27 (111)
8 d1vpua_ g.34.1.1 (A:) HIV-1 VP 8.8 23 0.0017 23.4 -0.8 29 8-36 7-35 (45)
9 d1pq1a_ f.1.4.1 (A:) Apoptosis 8.7 36 0.0026 29.1 0.1 51 82-132 30-83 (196)
10 d2zjre1 d.141.1.1 (E:83-172) R 8.4 20 0.0015 27.2 -1.6 32 45-76 43-74 (90)
No 1
>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.22 E-value=12 Score=27.80 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=18.1
Q ss_pred hhhhcCcce-eeeeeecCCCcccccCcCCCcCCcccchhhhcC
Q 013026 31 KDVEKGEVV-VEEKVVDSNSNVNINNINGEQRGFNASMMQTLN 72 (451)
Q Consensus 31 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (451)
=..++|+.+ |.|+.. .+.+.-....||+..=|-.+.+|.+.
T Consensus 22 Ls~~~Gd~v~Vl~~~~-~~~~w~~~~~~g~~G~~P~~Yve~~~ 63 (93)
T d1uffa_ 22 MSFNSGDIIQVDEKTV-GEPGWLYGSFQGNFGWFPCNYVEKMP 63 (93)
T ss_dssp CCBCTTCEEEECSSCC-CSSSEEEEEETTEEEEEETTTEEECC
T ss_pred ccCcCCCEEEEEEecc-CCCCEEEEEeCCcEEEEchHHEEECC
Confidence 467778643 223322 22333333445554334444455443
No 2
>d1t2wa_ b.100.1.1 (A:) Sortase A {Staphylococcus aureus [TaxId: 1280]}
Probab=23.88 E-value=17 Score=29.24 Aligned_cols=56 Identities=11% Similarity=0.158 Sum_probs=41.5
Q ss_pred hhhhhcCcceeeeeeecCCCcccccCcCCCcCC-cccchhhhcCCCCCceEEEeCcc
Q 013026 30 VKDVEKGEVVVEEKVVDSNSNVNINNINGEQRG-FNASMMQTLNPTNPLRIVINGGR 85 (451)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 85 (451)
++...+|-+..++...-.+.|.-|-+||+...+ .+-+.|.++++.+...+.+++++
T Consensus 33 ~~~L~~g~~~~~~~~~p~~gn~vI~GH~~~~~~~~~F~~L~~l~~Gd~i~v~~~~~~ 89 (145)
T d1t2wa_ 33 PEQLNRGVSFAEENESLDDQNISIAGHTFIDRPNYQFTNLKAAKKGSMVYFKVGNET 89 (145)
T ss_dssp HHHHHHSEEESSTTCCTTSSEEEEEEECCTTSTTSTTTTGGGCCTTCEEEEEETTEE
T ss_pred HHHhcccceEecCccCCCCCcEEEEEEecCCCCcccCccccccccceEEEEEeCCEE
Confidence 345667766555554444578889999987664 56788999999999988887765
No 3
>d2e9xd2 d.344.1.3 (D:166-223) GINS complex subunit 4, SLD5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.40 E-value=11 Score=26.33 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=10.3
Q ss_pred CCCCCCc-hhhhhhhcCc
Q 013026 21 GGEGGGE-EEVKDVEKGE 37 (451)
Q Consensus 21 ~~~~~~~-~~~~~~~~~~ 37 (451)
|.|.|+| ||+-|.|+|.
T Consensus 20 ~~e~D~q~d~~iDle~GS 37 (58)
T d2e9xd2 20 EPDTDEQRDYVIDLEKGS 37 (58)
T ss_dssp CCSSCGGGCEEEEECTTC
T ss_pred CCccCcccceeEecccCc
Confidence 4455554 4445889984
No 4
>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}
Probab=16.21 E-value=23 Score=26.80 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=30.1
Q ss_pred ecCCCcccccCcCCCcCCcccchhhhcCCCCCc
Q 013026 45 VDSNSNVNINNINGEQRGFNASMMQTLNPTNPL 77 (451)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (451)
++.+..+.|.++|-+.=|.-|+.+..++|++|-
T Consensus 43 ~~~~t~i~i~g~dK~~vg~~aa~IR~~r~pepY 75 (89)
T d2j01h2 43 VPEPTRVRVSGIDKQKVGQVAANIRAIRKPSAY 75 (89)
T ss_dssp CSSSSCEEEEESCSTTTTHHHHHHHTTSCSCSS
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHHhccCCCCCc
Confidence 567778999999999999999999999999994
No 5
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=11.65 E-value=32 Score=22.76 Aligned_cols=10 Identities=10% Similarity=-0.024 Sum_probs=4.7
Q ss_pred hcCCCCCCCc
Q 013026 18 EEGGGEGGGE 27 (451)
Q Consensus 18 ~~~~~~~~~~ 27 (451)
+-|.+|||||
T Consensus 35 GPn~v~ee~e 44 (45)
T d1kqfb2 35 GPNKEVDDDE 44 (45)
T ss_dssp CCBCSCSSTT
T ss_pred CCCccccccC
Confidence 4455554444
No 6
>d1rtya_ a.25.2.2 (A:) Putative ATP-binding cobalamin adenosyltransferase YvqK {Bacillus subtilis [TaxId: 1423]}
Probab=10.12 E-value=1.5e+02 Score=24.01 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhccCCchhHHHhHHHHHHHHH------HHHHHhhH
Q 013026 386 GSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIME------SIFRCGNG 433 (451)
Q Consensus 386 GSLIVaiI~~lR~il~~l~~~~~~~~~l~cc~~C~l~cle------~~i~y~Nr 433 (451)
||...|.+...|.++|... +++....+ .+++|+||
T Consensus 94 Gs~~~A~lh~aRtv~RRaE-------------R~~v~l~~~~~v~~~~~~YlNR 134 (161)
T d1rtya_ 94 GSKCASLLHIARTITRRAE-------------RRVVALMKSEEIHETVLRYLNR 134 (161)
T ss_dssp SSHHHHHHHHHHHHHHHHH-------------HHHHHHHHHSCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH-------------HHHHHHHHhcCCchHHHHHHHH
No 7
>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.18 E-value=72 Score=24.75 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 013026 112 PSQPSRPRSISTSPPAPTPTP 132 (451)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~ 132 (451)
+.|+.+++|+++..++||+.|
T Consensus 7 ~~p~~~~~p~~~~~~~p~~~P 27 (111)
T d1uk5a_ 7 GAPAEPAAPKSGEAETPPKHP 27 (111)
T ss_dssp CCCCCCCCCCCCSSSSCCCCH
T ss_pred CCCCCCCCCCCcCcCCCCCCc
No 8
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=8.77 E-value=23 Score=23.40 Aligned_cols=29 Identities=34% Similarity=0.486 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhcCCCCCCCchhhhhhhcC
Q 013026 8 VERETQNKEEEEGGGEGGGEEEVKDVEKG 36 (451)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (451)
++|=.||.|..-||.|+|-||=..=||-|
T Consensus 7 i~RIrERAEDSGNESeGD~eELs~lvemg 35 (45)
T d1vpua_ 7 IDRITERAEDSGNESEGDQEELSALVERG 35 (45)
T ss_dssp HHHHHHTTCHHHHTTTTHHHHTCSSCCGG
T ss_pred HHHHHHHcccCCCCCcccHHHHHHHHhcc
No 9
>d1pq1a_ f.1.4.1 (A:) Apoptosis regulator Bcl-xL {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.67 E-value=36 Score=29.11 Aligned_cols=51 Identities=14% Similarity=0.069 Sum_probs=0.0
Q ss_pred eCcccccCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013026 82 NGGRRVTAPRI---ATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTP 132 (451)
Q Consensus 82 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (451)
++..|-.+|++ .+..++.+.++|+.-+++.|.++++.+..+.....|.||+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (196)
T d1pq1a_ 30 VEENRTEAPEETEAERETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPM 83 (196)
T ss_dssp ------------------------------------------------CCSCCH
T ss_pred cccccccCCCCCcccccCCCCCCCCCccCCCCCCCCccccccccccccCCCCch
No 10
>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}
Probab=8.38 E-value=20 Score=27.16 Aligned_cols=32 Identities=13% Similarity=0.284 Sum_probs=0.0
Q ss_pred ecCCCcccccCcCCCcCCcccchhhhcCCCCC
Q 013026 45 VDSNSNVNINNINGEQRGFNASMMQTLNPTNP 76 (451)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (451)
++.+..+.+.++|-+.=|.-|+.+..++|++|
T Consensus 43 ~~~~t~i~i~g~dKq~vg~~aa~Ir~~r~pep 74 (90)
T d2zjre1 43 VPEPTRIDVSGIDKQLVGQVAANVRKVRKPDA 74 (90)
T ss_dssp CSSTTEEEEEESSHHHHHHHHHHHHHHTCCCT
T ss_pred ecCCCEEEEEEcCHHHHHHHHHHHHhhCCCCC
Done!