Query 013027
Match_columns 451
No_of_seqs 186 out of 905
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 20:51:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013027.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013027hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.1E-54 3.8E-59 402.4 14.2 148 3-154 13-170 (174)
2 1ut7_A No apical meristem prot 100.0 4.5E-54 1.5E-58 397.2 13.6 149 3-155 15-168 (171)
3 1ldd_A APC2WHB, anaphase promo 15.7 61 0.0021 25.9 1.7 26 6-32 37-63 (74)
4 1cmb_A Met APO-repressor; DNA- 12.9 2E+02 0.0069 24.1 4.0 39 12-55 50-88 (104)
5 1wgr_A Growth factor receptor- 9.2 73 0.0025 26.7 0.2 54 337-416 27-80 (100)
6 4dox_A Coat protein; all helix 7.9 1.3E+02 0.0043 28.9 1.2 21 8-28 158-178 (226)
7 3cpr_A Dihydrodipicolinate syn 6.0 1.7E+02 0.0059 28.2 1.2 18 5-23 118-135 (304)
8 3fkr_A L-2-keto-3-deoxyarabona 5.8 2.4E+02 0.0083 27.2 2.1 19 5-24 110-131 (309)
9 3rhf_A Putative polyphosphate 5.6 83 0.0028 31.1 -1.4 27 6-32 101-131 (289)
10 1f6k_A N-acetylneuraminate lya 5.5 2.1E+02 0.0072 27.3 1.4 18 5-23 106-123 (293)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.1e-54 Score=402.44 Aligned_cols=148 Identities=43% Similarity=0.847 Sum_probs=132.9
Q ss_pred CCCCCceeECCChHHHHHHHHHHHHCCCCCCCCcccccCcCCCCCCCCCCccCCCCCCCceEEEEecCCCCCCCCCcccc
Q 013027 3 GHGVVGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFFNAPVPKYANSKRINR 82 (451)
Q Consensus 3 ~~LPpGFRF~PTDEELV~~YL~~Ki~G~plp~~vI~e~vDVY~~ePWdLP~~~~~~~~e~eWYFFS~r~rKy~nG~R~nR 82 (451)
..|||||||+|||||||.|||++|+.|.+++.++|++ +|||++|||+||+.+..+ +.+|||||++++||++|.|+||
T Consensus 13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~e-vDvy~~~Pw~Lp~~~~~g--~~ewYFFs~r~~ky~~g~R~nR 89 (174)
T 3ulx_A 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAE-VDLYKFDPWDLPERALFG--AREWYFFTPRDRKYPNGSRPNR 89 (174)
T ss_dssp TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEE-CCGGGSCGGGSGGGCSSC--SSEEEEEEECCC-----CCSCE
T ss_pred cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeee-cccccCCchhhhhhhccC--CceEEEEeccccccCCCCCcee
Confidence 3799999999999999999999999999999999999 999999999999988765 7899999999999999999999
Q ss_pred ccCCcEEEeeccCeeEEcCCCcEEEEEEEeEeeeCcCCCCcccCceEEEEEeCCCCCC----------CCceEEEEEEec
Q 013027 83 TTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKWVMHEYHSLNASSY----------PKEFVLFRLKKK 152 (451)
Q Consensus 83 atggGyWKatG~~K~I~~~~g~vVG~KKtLvFY~GrapkG~KT~WvMHEYrL~~~~~~----------~de~VLCRIykK 152 (451)
++++||||+||++|+|... |.+||+||+|+||.|++|++.||+|+||||+|...... .++|||||||+|
T Consensus 90 ~t~~G~WkatG~dk~I~~~-g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K 168 (174)
T 3ulx_A 90 AAGNGYWKATGADKPVAPR-GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168 (174)
T ss_dssp EETTEEEEECSCCEEECCS-SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEES
T ss_pred ecCCceEccCCCCcEEeeC-CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEc
Confidence 9999999999999999874 56999999999999999999999999999999987432 279999999998
Q ss_pred CC
Q 013027 153 SG 154 (451)
Q Consensus 153 ~~ 154 (451)
+.
T Consensus 169 ~~ 170 (174)
T 3ulx_A 169 KN 170 (174)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=4.5e-54 Score=397.23 Aligned_cols=149 Identities=42% Similarity=0.826 Sum_probs=130.3
Q ss_pred CCCCCceeECCChHHHHHHHHHHHHCCCCCCCCcccccCcCCCCCCCCCCccCCCCCCCceEEEEecCCCCCCCCCcccc
Q 013027 3 GHGVVGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFFNAPVPKYANSKRINR 82 (451)
Q Consensus 3 ~~LPpGFRF~PTDEELV~~YL~~Ki~G~plp~~vI~e~vDVY~~ePWdLP~~~~~~~~e~eWYFFS~r~rKy~nG~R~nR 82 (451)
..|||||||+|||||||.|||++|+.|.+++.++|++ +|||++|||+||+.+..+ +.+|||||++++||++|.|+||
T Consensus 15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e-~Diy~~~Pw~Lp~~~~~g--~~ewyFFs~r~~k~~~g~R~~R 91 (171)
T 1ut7_A 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAE-IDLYKFDPWVLPNKALFG--EKEWYFFSPRDRKYPNGSRPNR 91 (171)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEE-CCGGGSCGGGHHHHSSSC--SSEEEEEEECCC-------CCE
T ss_pred cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEee-cccccCChhHhhchhhcC--CccEEEEeccccccCCCCcccc
Confidence 4799999999999999999999999999999999999 999999999999988765 8999999999999999999999
Q ss_pred ccCCcEEEeeccCeeEEcCCCcEEEEEEEeEeeeCcCCCCcccCceEEEEEeCCCCC-----CCCceEEEEEEecCCC
Q 013027 83 TTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKWVMHEYHSLNASS-----YPKEFVLFRLKKKSGA 155 (451)
Q Consensus 83 atggGyWKatG~~K~I~~~~g~vVG~KKtLvFY~GrapkG~KT~WvMHEYrL~~~~~-----~~de~VLCRIykK~~~ 155 (451)
+|++||||+||++|+|... +.+||+||+|+||.|++|++.||+|+||||+|..... ..++|||||||+|+..
T Consensus 92 ~t~~G~Wk~tG~~k~I~~~-~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 92 VAGSGYWKATGTDKIISTE-GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp EETTEEEEEEEEEEEEEET-TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred cCCCCEEeccCCCceEEec-CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 9999999999999999974 4699999999999999999999999999999998753 1289999999999864
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=15.73 E-value=61 Score=25.86 Aligned_cols=26 Identities=8% Similarity=0.087 Sum_probs=22.3
Q ss_pred CCceeECC-ChHHHHHHHHHHHHCCCCC
Q 013027 6 VVGFRFHP-TDEEIVTYFLERKMCGLDF 32 (451)
Q Consensus 6 PpGFRF~P-TDEELV~~YL~~Ki~G~pl 32 (451)
|.|+.|.. |++||-. ||.+++....+
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 67899998 9999888 99999987754
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=12.86 E-value=2e+02 Score=24.05 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=32.5
Q ss_pred CCChHHHHHHHHHHHHCCCCCCCCcccccCcCCCCCCCCCCccC
Q 013027 12 HPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRS 55 (451)
Q Consensus 12 ~PTDEELV~~YL~~Ki~G~plp~~vI~e~vDVY~~ePWdLP~~~ 55 (451)
|-|..||++.-...-..|+|+|.+ .|+-+..|.++|...
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~D-----~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPDD-----ADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCG-----GGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCCc-----hhhhhcCCccchHHH
Confidence 568889998888888899999964 688899999999643
No 5
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=9.21 E-value=73 Score=26.74 Aligned_cols=54 Identities=22% Similarity=0.428 Sum_probs=37.4
Q ss_pred ccCchhhHHHHhhCCCCCccccchhccchheeeeeecccccCCCCcceeeeeeeccccCCCCCCccccchhhhhhhccCc
Q 013027 337 QSSDADSKIYQQHGKVPGTSNVFYEKTHAQMETVWALSETSSSSEGYGIMDFDVSSVNSDTDLPGIVGHESVVDELQHTP 416 (451)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (451)
.+.+|=.+|.|. ..+|.|.++..-|||.|+..- +|+-- .+-+||.||+.|..-|
T Consensus 27 ~~~~Ta~dv~~~----------L~~K~~~~~~~~WaLvE~~P~---L~~ER-------------~~EDHE~vvevl~~W~ 80 (100)
T 1wgr_A 27 AAGATARHVCEM----------LVQRAHALSDETWGLVECHPH---LALER-------------GLEDHESVVEVQAAWP 80 (100)
T ss_dssp CTTCCHHHHHHH----------HHCSSSCCCCCCCCEEEEETT---TTEEE-------------EECSSSCHHHHHTTSC
T ss_pred CCCCcHHHHHHH----------HHHHcCCCCCCCeEEEEecCC---CCcEE-------------eccCchhHHHHHhhCc
Confidence 344555566654 568999999999999998653 11111 2668999999987643
No 6
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=7.90 E-value=1.3e+02 Score=28.89 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=15.3
Q ss_pred ceeECCChHHHHHHHHHHHHC
Q 013027 8 GFRFHPTDEEIVTYFLERKMC 28 (451)
Q Consensus 8 GFRF~PTDEELV~~YL~~Ki~ 28 (451)
|..+.||++|+|.|=..+++.
T Consensus 158 GLiR~PT~~E~iA~~t~K~ia 178 (226)
T 4dox_A 158 GLTRSPTQEERIANATNKQVH 178 (226)
T ss_dssp CCSSCCCHHHHHHHHTC----
T ss_pred CCCCCCCHHHHHHHHHHHHHH
Confidence 899999999999976665543
No 7
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=5.96 E-value=1.7e+02 Score=28.16 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=14.2
Q ss_pred CCCceeECCChHHHHHHHH
Q 013027 5 GVVGFRFHPTDEEIVTYFL 23 (451)
Q Consensus 5 LPpGFRF~PTDEELV~~YL 23 (451)
+|| |.|.||+++|+.||-
T Consensus 118 ~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 466 558899999999774
No 8
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=5.76 E-value=2.4e+02 Score=27.22 Aligned_cols=19 Identities=11% Similarity=0.392 Sum_probs=14.5
Q ss_pred CCCcee---ECCChHHHHHHHHH
Q 013027 5 GVVGFR---FHPTDEEIVTYFLE 24 (451)
Q Consensus 5 LPpGFR---F~PTDEELV~~YL~ 24 (451)
+|| |. |.||+++|+.||-.
T Consensus 110 ~~P-yy~~~~~~s~~~l~~~f~~ 131 (309)
T 3fkr_A 110 MPP-YHGATFRVPEAQIFEFYAR 131 (309)
T ss_dssp CCS-CBTTTBCCCHHHHHHHHHH
T ss_pred cCC-CCccCCCCCHHHHHHHHHH
Confidence 466 44 79999999997743
No 9
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=5.63 E-value=83 Score=31.06 Aligned_cols=27 Identities=33% Similarity=0.307 Sum_probs=21.4
Q ss_pred CCceeEC----CChHHHHHHHHHHHHCCCCC
Q 013027 6 VVGFRFH----PTDEEIVTYFLERKMCGLDF 32 (451)
Q Consensus 6 PpGFRF~----PTDEELV~~YL~~Ki~G~pl 32 (451)
|-|||.+ ||++|+...||.+-....|-
T Consensus 101 PRg~~V~a~~~Pt~eE~~~~ylwR~~~~lP~ 131 (289)
T 3rhf_A 101 PQGVQLTAFKAPTDEEKSHDFLWRIEKQVPA 131 (289)
T ss_dssp GGGEEEEECCSCCHHHHTSCTTHHHHTTCCC
T ss_pred cCceEEEECCCCChhhhcCCHHHHHHHhCCC
Confidence 6788854 99999999999987665543
No 10
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=5.48 E-value=2.1e+02 Score=27.30 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=13.7
Q ss_pred CCCceeECCChHHHHHHHH
Q 013027 5 GVVGFRFHPTDEEIVTYFL 23 (451)
Q Consensus 5 LPpGFRF~PTDEELV~~YL 23 (451)
+|| |.|.||+++|+.||-
T Consensus 106 ~~P-~y~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 106 VTP-FYYKFSFPEIKHYYD 123 (293)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 355 448899999999774
Done!