Query 013029
Match_columns 451
No_of_seqs 142 out of 1279
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 20:53:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013029.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013029hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_M AP-2 complex subunit MU 100.0 3.9E-95 1.3E-99 750.0 51.5 430 1-451 1-435 (435)
2 1w63_M Adaptor-related protein 100.0 1.7E-94 5.7E-99 742.8 42.7 419 1-451 2-422 (423)
3 1i31_A Clathrin coat assembly 100.0 7.7E-70 2.6E-74 537.0 33.3 309 125-451 1-314 (314)
4 3l81_A AP-4 complex subunit MU 100.0 3.1E-68 1.1E-72 520.6 30.4 282 159-451 8-301 (301)
5 4en2_M AP-1 complex subunit MU 100.0 1.2E-67 4.1E-72 508.6 29.3 262 176-451 2-265 (266)
6 3ml6_A Chimeric complex betwee 100.0 1.9E-66 6.4E-71 523.9 33.2 275 171-451 103-385 (385)
7 1w63_Q Adapter-related protein 100.0 1.9E-31 6.5E-36 237.1 15.7 138 1-142 1-141 (158)
8 2vgl_S AP-2 complex subunit si 100.0 6.7E-31 2.3E-35 229.8 14.1 135 1-139 1-139 (142)
9 3tjz_C Coatomer subunit zeta-1 100.0 4.1E-29 1.4E-33 220.1 16.4 133 1-140 12-150 (153)
10 3g9h_A Suppressor of yeast pro 99.0 8.7E-07 3E-11 85.7 30.5 209 182-427 66-302 (328)
11 2nut_C Vesicle-trafficking pro 88.4 4.4 0.00015 36.0 11.4 96 1-97 2-101 (196)
12 2vx8_A Nucleoporin-like protei 88.1 3.1 0.00011 36.3 9.8 49 50-98 87-135 (169)
13 3cpt_A Mitogen-activated prote 87.5 7.3 0.00025 32.7 11.1 92 2-94 38-135 (143)
14 4b93_A Vesicle-associated memb 87.3 6 0.00021 35.0 11.5 83 10-97 10-92 (189)
15 3cue_A Transport protein parti 86.0 14 0.00048 33.3 13.0 24 1-24 2-25 (219)
16 4afi_A AP-3 complex subunit de 83.8 15 0.00052 31.9 12.0 83 10-97 62-144 (173)
17 1nrj_A Signal recognition part 83.7 3.3 0.00011 34.6 7.1 72 1-72 1-91 (158)
18 2j3t_C Trafficking protein par 82.0 5.8 0.0002 33.5 8.4 91 1-96 2-109 (145)
19 2fh5_A Signal recognition part 81.8 13 0.00044 32.7 10.7 92 1-96 10-103 (185)
20 3bw6_A Synaptobrevin homolog Y 79.3 23 0.00078 29.6 11.3 48 50-97 62-110 (144)
21 2j3w_A Sedlin, trafficking pro 77.1 19 0.00065 30.1 10.1 93 2-96 6-112 (142)
22 3cue_C Transport protein parti 70.9 13 0.00046 31.8 7.6 89 1-96 2-115 (159)
23 3kyq_A YKT6, synaptobrevin hom 59.2 20 0.00068 31.9 6.7 93 2-97 4-107 (199)
24 3vjz_A DMP19, putative unchara 35.2 8.7 0.0003 33.1 0.2 51 75-125 10-66 (166)
No 1
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=3.9e-95 Score=750.01 Aligned_cols=430 Identities=32% Similarity=0.637 Sum_probs=363.5
Q ss_pred CeEEEEEEeCCCCEEEEEeccCCCCcchHHHHHHHhcccccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEeccCCCHHH
Q 013029 1 MISQFFVLSQRGDNIVFRDYRGEVQKGSAEIFFRKVKFWKDDGEEEAPPVFNVDGVNYFHVKVVGLLFVATTRVNVSPSL 80 (451)
Q Consensus 1 MI~~ifIl~~~G~~li~r~y~~~~~~~~~e~f~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~l~~v~~~~~~~n~~~ 80 (451)
||++|||+|.+|+++++|+|+++.++..++.|++.+.... ...++|+++++++.|+|+++++|||+++++.++||++
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~---~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~ 77 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHAR---QQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAM 77 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCCHHHHHHHHHHTTTCS---SCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHH
T ss_pred CeEEEEEECCCCCEEEEEecCCCCChhHHHHHHHHHhccc---cCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 9999999999999999999999888888899998887532 2468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCHHHHHhhHHHHHHHHHHhhcCCeeeeechHhhheeeecCceeccccccCCCCCceeeecc
Q 013029 81 VLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQG 160 (451)
Q Consensus 81 ~~~~L~~~~~~l~~y~~~l~e~~i~~n~~~v~~lldE~id~G~p~~t~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
+++|||+|+++|++|||+++|++|++||++||++||||+|+|+|++|++++|+.++.+++++.+..... +
T Consensus 78 ~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~----------~ 147 (435)
T 2vgl_M 78 VFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKE----------E 147 (435)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhccccccccccccc----------c
Confidence 999999999999999999999999999999999999999999999999999999999998875432100 0
Q ss_pred cccCCCcccccccccCCCC--CcccceEEEEEEEeEEEEEcCCccEEEEEEEEEEEEEEeecCCceeEEEeccccccccC
Q 013029 161 TKRMPGTAVTKSVVANEPG--GRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKG 238 (451)
Q Consensus 161 ~~~~~s~a~~~~~~~~~~~--~~~~nEi~vdV~E~i~~~~~~~G~v~~~~V~G~i~~~s~LsG~P~~~l~ln~~~~~~~~ 238 (451)
.. .++.++.+++ +||+. .|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|||||+|+|+||++..++++
T Consensus 148 ~~-~~~~~~~~~i-~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~ 225 (435)
T 2vgl_M 148 QS-QITSQVTGQI-GWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQ 225 (435)
T ss_dssp ------------C-CSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC---
T ss_pred cc-cccccccccc-ccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhcccc
Confidence 01 1112233444 47764 47999999999999999999999999999999999999999999999999998766543
Q ss_pred CCccccccCCCCCCcEEeeccccccccCCCCccCCccEEEeCCCCeEEEEEEeecCCCCCCeEEEEEEEEcCceEEEEEE
Q 013029 239 GRSIYDYRSSTGSGAVVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQEFKPPFRINTLVEEAGALKAEVII 318 (451)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~d~~fH~cV~~~~~~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~P~~v~~~~~~~~~~~~e~~l 318 (451)
+.......+.....++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.+..+||.++|+++..|.+++||++
T Consensus 226 ~~~~~~~~~~~~~~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l 305 (435)
T 2vgl_M 226 GKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKV 305 (435)
T ss_dssp --------------CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEEEEECSSCCCSEEEEEEEECCTTTEEEEEE
T ss_pred cccccccccccccCceEccccccceeecHhHhccCceEEEECCCCcEEEEEEEecCCcCCCeEEEEEEEecCCCEEEEEE
Confidence 21100000111124678999999999999999999999999999999999999998889999999999987767899999
Q ss_pred EEeeecCCcceeeeEEEEecCCCCceeEEEEEcCCCCcceEEEeCCCcEEEEEeCeecCCceeEEEEEEEeccCCCCCCC
Q 013029 319 KISAEFSASITANTIVVEMPLPKYTTRVSFGLEPGAVGQRTDFKEANRRLEWGLKKIVGGSEHTLRAKLTFSQESHGNIT 398 (451)
Q Consensus 319 ~l~~~~~~~~~~~~v~i~iplP~~~~~~~~~~~~g~~~~~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~~~~~~~~~~~ 398 (451)
+++++|+++..++||.|+||+|+++.+++++++.|+ ++|++++++++|+|++++|+++++++|++++.+..... .
T Consensus 306 ~~~~~~~~~~~~~~V~I~IP~P~~~~~~~~~~~~G~----~~y~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~~~~-~ 380 (435)
T 2vgl_M 306 VIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGK----AKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKK-K 380 (435)
T ss_dssp EEEECSCTTSEEEEEEEEEECCSSCCCEEEEESSSE----EEEETTTTEEEEEEEEEETTCEEEEEEEEECCCCSCSC-C
T ss_pred EEeCCCCCCceeeEEEEEEECCCCCCCceEEeccee----EEEccCCCEEEEEeccCCCCCCEEEEEEEEecCCCcCc-c
Confidence 999999988899999999999999999999998888 99999999999999999999999999999998643222 2
Q ss_pred CccCceEEEEeeCcccccccEEEEEEEeec---CCCCCcccceEEEEecCcEEEeC
Q 013029 399 KEVGPVNMTFTIPMYNASKLQVKYLQIAKK---SSTYNPYRWVRYVTQANSYVARI 451 (451)
Q Consensus 399 ~~~~pi~v~F~ip~~t~SGl~V~~l~v~~~---~~~~~~~k~vrY~t~sg~Y~~R~ 451 (451)
..++||+|+|++| +++|||+|++|++.++ ..+|+|+|||||+|+||+|++|+
T Consensus 381 ~~~~pi~v~F~i~-~t~Sgl~V~~l~v~~~~~~~~~y~~~kwVrY~t~sg~y~~R~ 435 (435)
T 2vgl_M 381 WARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 435 (435)
T ss_dssp CCCCCEEEEEEES-SCTTCCCEEEEEEECSSSSCBGGGSEEEEEEEEEEEEEEECC
T ss_pred cCCCcEEEEEEEE-ecccccEEEEEEEeccccccCCCCCcCceEEEEeCCeEEEcC
Confidence 3489999999999 9999999999999987 23599999999999999999996
No 2
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=1.7e-94 Score=742.82 Aligned_cols=419 Identities=35% Similarity=0.652 Sum_probs=361.1
Q ss_pred CeEEEEEEeCCCCEEEEEeccCCCCcchHHHHHHHhcccccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEeccCCCHHH
Q 013029 1 MISQFFVLSQRGDNIVFRDYRGEVQKGSAEIFFRKVKFWKDDGEEEAPPVFNVDGVNYFHVKVVGLLFVATTRVNVSPSL 80 (451)
Q Consensus 1 MI~~ifIl~~~G~~li~r~y~~~~~~~~~e~f~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~l~~v~~~~~~~n~~~ 80 (451)
||+|+||+|.+|+++++|+|+++.++..++.|++.+....+ ...++|+++++++.|+|+++++|||+++++.++||++
T Consensus 2 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~--~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~ 79 (423)
T 1w63_M 2 SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEE--EGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSL 79 (423)
T ss_dssp CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHH--TSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHH
T ss_pred ceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccc--cCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 99999999999999999999998888888999998875321 1468899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCHHHHHhhHHHHHHHHHHhhcCCeeeeechHhhheeeecCceeccccccCCCCCceeeecc
Q 013029 81 VLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQG 160 (451)
Q Consensus 81 ~~~~L~~~~~~l~~y~~~l~e~~i~~n~~~v~~lldE~id~G~p~~t~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
+++|||+|+++|++|||.++|++|++||++||++||||+|+|+|++|++++|+++|.+++++....
T Consensus 80 ~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~-------------- 145 (423)
T 1w63_M 80 VFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLETG-------------- 145 (423)
T ss_dssp HHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCCCCCC--------------
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCcccccc--------------
Confidence 999999999999999999999999999999999999999999999999999999999988762100
Q ss_pred cccCCCcccccccccCCCC--CcccceEEEEEEEeEEEEEcCCccEEEEEEEEEEEEEEeecCCceeEEEeccccccccC
Q 013029 161 TKRMPGTAVTKSVVANEPG--GRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKG 238 (451)
Q Consensus 161 ~~~~~s~a~~~~~~~~~~~--~~~~nEi~vdV~E~i~~~~~~~G~v~~~~V~G~i~~~s~LsG~P~~~l~ln~~~~~~~~ 238 (451)
.. .++.+..+++ +||+. .|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|||||+|+|+||++..+++.
T Consensus 146 ~~-~~~~~~~~~i-~wr~~g~~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~ 223 (423)
T 1w63_M 146 AP-RPPATVTNAV-SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNT 223 (423)
T ss_dssp ------------C-CSSCSSCCCSSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEECSSCCEEEEEECSCC-----
T ss_pred cc-CCcccccCCC-CccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEeCCCCeEEEEECCccccccc
Confidence 00 1112233344 47764 47999999999999999999999999999999999999999999999999998765432
Q ss_pred CCccccccCCCCCCcEEeeccccccccCCCCccCCccEEEeCCCCeEEEEEEeecCCCCCCeEEEEEEEEcCceEEEEEE
Q 013029 239 GRSIYDYRSSTGSGAVVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQEFKPPFRINTLVEEAGALKAEVII 318 (451)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~d~~fH~cV~~~~~~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~P~~v~~~~~~~~~~~~e~~l 318 (451)
+. ....++.|+||+||||||+++|+++|+|+|+||||+|+||+||++.+..+||++.++++..+++++||++
T Consensus 224 ~~--------~~~~~v~l~d~~fHpcV~~~~f~~~r~isf~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l 295 (423)
T 1w63_M 224 GR--------GKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMV 295 (423)
T ss_dssp ----------------CEEEEEECTTEEESSSSSCCEEEECCCSEEEEEEEEEEECCCCCTTCCEEEEEEETTTEEEEEE
T ss_pred cc--------cccCceEcccccccccccHHHhCCCCeEEEECCCCcEEEEEEEecCCcCCCEEEEEEEEecCCCEEEEEE
Confidence 21 1234678999999999999999999999999999999999999998888999999999876667999999
Q ss_pred EEeeecCCcceeeeEEEEecCCCCceeEEEEEcCCCCcceEEEeCCCcEEEEEeCeecCCceeEEEEEEEeccCCCCCCC
Q 013029 319 KISAEFSASITANTIVVEMPLPKYTTRVSFGLEPGAVGQRTDFKEANRRLEWGLKKIVGGSEHTLRAKLTFSQESHGNIT 398 (451)
Q Consensus 319 ~l~~~~~~~~~~~~v~i~iplP~~~~~~~~~~~~g~~~~~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~~~~~~~~~~~ 398 (451)
+++++|+++..++||.|+||+|+++.+++++++.|+ ++|++++++++|+|++++|+++++|+|++++.+... ...
T Consensus 296 ~~~~~~~~~~~~~~V~I~IP~P~~~~~~~~~~~~G~----~~y~~~~~~l~W~I~~i~~~~~~~l~~~~~l~~~~~-~~~ 370 (423)
T 1w63_M 296 KAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGS----VKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEA-EDK 370 (423)
T ss_dssp EEECCSCTTSEEESCEEEEECCTTCCCCEEEESSSE----EEEETGGGEEEEECSEEETTCEEEEEEEEEC---------
T ss_pred EEcccCCCcceeeEEEEEEeCCCCcccceEEecCcc----EEEecCCCEEEEEeCcCCCCCcEEEEEEEEccCCCc-ccc
Confidence 999999988899999999999999999999998888 999999999999999999999999999999976532 123
Q ss_pred CccCceEEEEeeCcccccccEEEEEEEeecCCCCCcccceEEEEecCcEEEeC
Q 013029 399 KEVGPVNMTFTIPMYNASKLQVKYLQIAKKSSTYNPYRWVRYVTQANSYVARI 451 (451)
Q Consensus 399 ~~~~pi~v~F~ip~~t~SGl~V~~l~v~~~~~~~~~~k~vrY~t~sg~Y~~R~ 451 (451)
..++||+|+|++|++++|||+|++|++.++. +|+|+|||||+|+||+|++|+
T Consensus 371 ~~~~pi~v~F~i~~~t~Sgl~V~~l~v~~~~-~y~~~kwVrY~t~sg~y~~R~ 422 (423)
T 1w63_M 371 EGKPPISVKFEIPYFTTSGIQVRYLKIIEKS-GYQAIPWVRYITQNGDYQLRT 422 (423)
T ss_dssp --CCCEEEEBCCSSCCTTCCCEEEEEEECSS-CCCCEEEEEEEEEBSCEEECC
T ss_pred cCCCcEEEEEEECCEeCCCCEEEEEEeEccC-CCCCcCceEEEEeCCcEEEec
Confidence 4589999999999999999999999999854 499999999999999999996
No 3
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=100.00 E-value=7.7e-70 Score=537.01 Aligned_cols=309 Identities=31% Similarity=0.602 Sum_probs=231.3
Q ss_pred eeechHhhheeeecCceeccccccCCCCCceeeecccccCCCcccccccccCCCC--CcccceEEEEEEEeEEEEEcCCc
Q 013029 125 QTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPG--GRKREEIFVDIIEKISVTFSSSG 202 (451)
Q Consensus 125 ~~t~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~a~~~~~~~~~~~--~~~~nEi~vdV~E~i~~~~~~~G 202 (451)
|+||+++||++|.++++..+.... .....++.+..++++ ||+. .|++|||||||+|+|+++++++|
T Consensus 1 q~te~~~Lk~~i~~~~~~~~~~~~-----------~~~~~~~~~~~~~v~-WR~~gi~y~~NEi~vdV~E~v~~~i~~~G 68 (314)
T 1i31_A 1 QNSETGALKTFITQQGIKSQHQTK-----------EEQSQITSQVTGQIG-WRREGIKYRRNELFLDVLESVNLLMSPQG 68 (314)
T ss_dssp ------------------------------------------------CT-TSCSCCCCSSCEEEEEEEEEEEEEECSSC
T ss_pred CcCChHHHHHhhcCCCeecccccc-----------ccccCCCccccCCCC-CCccCCccccceEEEEEEEEEEEEECCCC
Confidence 689999999999998875422100 011122234445554 7664 58999999999999999999999
Q ss_pred cEEEEEEEEEEEEEEeecCCceeEEEeccccccccCCCccccccCCCCCCcEEeeccccccccCCCCccCCccEEEeCCC
Q 013029 203 YILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGGRSIYDYRSSTGSGAVVLDDCNFHESVRLDSFDVDRTLSLVPPD 282 (451)
Q Consensus 203 ~v~~~~V~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~fH~cV~~~~~~~~~~i~F~PPd 282 (451)
.+++++|.|.|.|+|+|||||+|+|+||++..+++++...+...+.....++.|+||+|||||++++|+++|+|+|+|||
T Consensus 69 ~v~~~eV~G~I~~~~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPD 148 (314)
T 1i31_A 69 QVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPD 148 (314)
T ss_dssp CEEEEEEEEEEEEEEECSSSCEEEEEESCCC-----------------CCCCCCSEEEECTTSBCC----CCCEEECCCS
T ss_pred CEEEEEEEEEEEEEEEcCCCCeEEEEECCchhccccccccccccccccCCceEcccccccccccHHHcCCcceEEEECCC
Confidence 99999999999999999999999999999876654322100000111135678999999999999999999999999999
Q ss_pred CeEEEEEEeecCCCCCCeEEEEEEEEcCceEEEEEEEEeeecCCcceeeeEEEEecCCCCceeEEEEEcCCCCcceEEEe
Q 013029 283 GEFPVMNYRMTQEFKPPFRINTLVEEAGALKAEVIIKISAEFSASITANTIVVEMPLPKYTTRVSFGLEPGAVGQRTDFK 362 (451)
Q Consensus 283 G~F~Lm~Yr~~~~~~~P~~v~~~~~~~~~~~~e~~l~l~~~~~~~~~~~~v~i~iplP~~~~~~~~~~~~g~~~~~~~~~ 362 (451)
|+|+||+||++.+..+||.++|+++..|.+++||+++++++|+....++||.|+||+|.++.+++++++.|+ ++|+
T Consensus 149 G~F~Lm~Yr~~~~~~lP~~v~~~~~~~g~~~iE~~l~~~~~~~~~~~~~nV~I~IP~P~~~~~~~~~~~~G~----~~y~ 224 (314)
T 1i31_A 149 GEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGK----AKYK 224 (314)
T ss_dssp EEEEEEEEEECSSCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEEEEEEEEECCTTEEEEEEECSSSE----EEEE
T ss_pred CCeEEEEEEecCCcCCCEEEEEEEEecCCcEEEEEEEEccCCCCcceeeEEEEEEECCCCcccceEEecCce----EEEe
Confidence 999999999998889999999999987767999999999999988899999999999999999999988887 9999
Q ss_pred CCCcEEEEEeCeecCCceeEEEEEEEeccCCCCCCCCccCceEEEEeeCcccccccEEEEEEEeec---CCCCCcccceE
Q 013029 363 EANRRLEWGLKKIVGGSEHTLRAKLTFSQESHGNITKEVGPVNMTFTIPMYNASKLQVKYLQIAKK---SSTYNPYRWVR 439 (451)
Q Consensus 363 ~~~~~l~W~I~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pi~v~F~ip~~t~SGl~V~~l~v~~~---~~~~~~~k~vr 439 (451)
+++++++|+|++++++++++|+|++++.+..... ...++||+|+|++| +++|||+|++|++.++ ..+|+|+||||
T Consensus 225 ~~~~~l~W~I~~i~g~~e~~l~~~~~l~s~~~~~-~~~~~pi~v~F~ip-~t~Sgl~V~~l~v~e~~~~~~~y~~~kwVr 302 (314)
T 1i31_A 225 ASENAIVWKIKRMAGMKESQISAEIELLPTNDKK-KWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVR 302 (314)
T ss_dssp GGGTEEEEEEEEEESSEEEEEEEEEEECCCCSSS-CCCCCCEEEEEEES-SCTTCCCEEEEEEECSSSSCCGGGCEEEEE
T ss_pred cCCCEEEEEeCcCCCCCcEEEEEEEEecCCCcCC-ccCCCcEEEEEEEe-ecccCcEEEEEEEeccccccCCCCccCceE
Confidence 9999999999999999999999999998643222 23489999999999 9999999999999987 23599999999
Q ss_pred EEEecCcEEEeC
Q 013029 440 YVTQANSYVARI 451 (451)
Q Consensus 440 Y~t~sg~Y~~R~ 451 (451)
|+|+||+|++|+
T Consensus 303 Yit~sg~y~~R~ 314 (314)
T 1i31_A 303 YIGRSGIYETRC 314 (314)
T ss_dssp EEEEEEEEEECC
T ss_pred EEEeCCeEEEcC
Confidence 999999999996
No 4
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=100.00 E-value=3.1e-68 Score=520.60 Aligned_cols=282 Identities=29% Similarity=0.576 Sum_probs=222.3
Q ss_pred cccccCCCcccccccccCCCCCcccceEEEEEEEeEEEEEcCCccEEEEEEEEEEEEEEeecCCceeEEEeccccccccC
Q 013029 159 QGTKRMPGTAVTKSVVANEPGGRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKG 238 (451)
Q Consensus 159 ~~~~~~~s~a~~~~~~~~~~~~~~~nEi~vdV~E~i~~~~~~~G~v~~~~V~G~i~~~s~LsG~P~~~l~ln~~~~~~~~ 238 (451)
|+++..|++|+.+|+.+||+..|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..++++
T Consensus 8 ~~~~~~~~~a~~~pv~~wr~~~~~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~ 87 (301)
T 3l81_A 8 QQSKVAPSSAASRPVLSSRSDQSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKS 87 (301)
T ss_dssp -------------------------CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCC
T ss_pred cCCcccCchhhcCcccccccccCCcceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEccccccccc
Confidence 45678899999999988998889999999999999999999999999999999999999999999999999998877654
Q ss_pred CCccccccCCCCCCcEEeeccccccccCCCCccCCccEEEeCCCCeEEEEEEeecCCC--CCCeEEEEEEEEcCc-eEEE
Q 013029 239 GRSIYDYRSSTGSGAVVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQEF--KPPFRINTLVEEAGA-LKAE 315 (451)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~d~~fH~cV~~~~~~~~~~i~F~PPdG~F~Lm~Yr~~~~~--~~P~~v~~~~~~~~~-~~~e 315 (451)
+.. ...+++.|+||+|||||++++|+++|.|+|+||||+|+||+||++.+. .+||.++|+++..+. +++|
T Consensus 88 ~~~-------~~~~~~~l~d~~fH~cV~~~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~~~P~~v~~~v~~~~~~~~ie 160 (301)
T 3l81_A 88 ELR-------GYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDRGSGRLQ 160 (301)
T ss_dssp TTT-------CCCSSSEESEEEEETTCBCTTHHHHCEEEECCCSEEEEEEEEEECSCCSSCCSEEEEEEEEECTTTSEEE
T ss_pred ccc-------cccCceEccccccccccChhHccccceEEecCCCCeeEEEEEEecCCCccCCCEEEEEEEEECCCcEEEE
Confidence 321 123578899999999999999999999999999999999999998643 799999999998654 7999
Q ss_pred EEEEEeeecCCcceeeeEEEEecCCCCceeEEEEEcCCCCcceEEEeCCCcEEEEEeCeecCCceeEEEEEEEeccCCCC
Q 013029 316 VIIKISAEFSASITANTIVVEMPLPKYTTRVSFGLEPGAVGQRTDFKEANRRLEWGLKKIVGGSEHTLRAKLTFSQESHG 395 (451)
Q Consensus 316 ~~l~l~~~~~~~~~~~~v~i~iplP~~~~~~~~~~~~g~~~~~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~~~~~~~~ 395 (451)
|+++++++|+.+..++||.|+||+|.++.++.++...+ .|+++| ++++|+|+|++++|++++++++++++++..+.
T Consensus 161 ~~l~l~~~f~~~~~~~nV~I~IPvP~~~~~~~~~~~~~--~G~~~y--~~~~lvW~I~~~~g~~~~s~~~~~~l~~~~~~ 236 (301)
T 3l81_A 161 VYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSP--EQKAEL--AEGALRWDLPRVQGGSQLSGLFQMDVPGPPGP 236 (301)
T ss_dssp EEEEEEECSCTTCEEEEEEEEEECCTTCEEEEEEESST--TCEEEE--ETTEEEEEECCEETTCEEEEEEEEECCCCCC-
T ss_pred EEEEEecCCCCCcEEEEEEEEEcCCCCcccceEEEeec--CceEEE--eCcEEEEEEeeECCCcEEeEEEEEEecCCccc
Confidence 99999999999999999999999999998888554322 234999 99999999999999989999999998754321
Q ss_pred C--------CCCccCceEEEEeeCcccccccEEEEEEEeecC-CCCCcccceEEEEecCcEEEeC
Q 013029 396 N--------ITKEVGPVNMTFTIPMYNASKLQVKYLQIAKKS-STYNPYRWVRYVTQANSYVARI 451 (451)
Q Consensus 396 ~--------~~~~~~pi~v~F~ip~~t~SGl~V~~l~v~~~~-~~~~~~k~vrY~t~sg~Y~~R~ 451 (451)
. ....++||+|+|++|++++|||+|++|+|.++. .+|+|+|||||+|+||+|++|+
T Consensus 237 ~~~~~~~~~~~~~~~PI~v~F~ip~~t~SGl~Vr~L~v~e~~~~~y~~~kwVRYiT~sg~Y~~R~ 301 (301)
T 3l81_A 237 PSHGLSTSASPLGLGPASLSFELPRHTCSGLQVRFLRLAFRPSGNANPHKWVRHLSHSDAYVIRI 301 (301)
T ss_dssp -----------CCCCCEEEEEEEETCCSSCCCEEEEEEEC-------CEEEEEEEEEEEEEEECC
T ss_pred cccccccccccccCCCEEEEEEeCCccccCcEEEEEEEecccccCCCCccceEEEEeCCcEEEcC
Confidence 1 123589999999999999999999999999975 3599999999999999999996
No 5
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=100.00 E-value=1.2e-67 Score=508.62 Aligned_cols=262 Identities=35% Similarity=0.684 Sum_probs=234.2
Q ss_pred CCCC--CcccceEEEEEEEeEEEEEcCCccEEEEEEEEEEEEEEeecCCceeEEEeccccccccCCCccccccCCCCCCc
Q 013029 176 NEPG--GRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGGRSIYDYRSSTGSGA 253 (451)
Q Consensus 176 ~~~~--~~~~nEi~vdV~E~i~~~~~~~G~v~~~~V~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~~~ 253 (451)
||+. .|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..+++.+.. ...+
T Consensus 2 WR~~~i~y~~nei~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~~~~~--------~~~~ 73 (266)
T 4en2_M 2 WRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRG--------KSKS 73 (266)
T ss_dssp CCCTTCCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHHTTCT--------TSCC
T ss_pred CcCCCCccccCeEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCcccccccccc--------ccCc
Confidence 6664 47999999999999999999999999999999999999999999999999998765543321 1356
Q ss_pred EEeeccccccccCCCCccCCccEEEeCCCCeEEEEEEeecCCCCCCeEEEEEEEEcCceEEEEEEEEeeecCCcceeeeE
Q 013029 254 VVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQEFKPPFRINTLVEEAGALKAEVIIKISAEFSASITANTI 333 (451)
Q Consensus 254 ~~l~d~~fH~cV~~~~~~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~P~~v~~~~~~~~~~~~e~~l~l~~~~~~~~~~~~v 333 (451)
+.++||+|||||+++.|+++|.|+|+||||+|+||+||++.+..+||.++++++..+.++++++++++++|+.+..++||
T Consensus 74 ~~l~d~~fH~cV~~~~f~~~r~i~f~PPdg~F~Lm~yr~~~~~~~Pi~i~~~~~~~~~~~vei~v~~k~~~~~~~~~~nV 153 (266)
T 4en2_M 74 VELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNV 153 (266)
T ss_dssp BCCEEEEECTTBCHHHHHHHCCCEECCCSEEEEEEEEEECCCCCCSEEEEEEEEEEETTEEEEEEEEEECBCTTCEEEEE
T ss_pred cCccccccccccCHhHccccceEEEeCCCCceEEEEEEecCCCCCCEEEEEEEecCCCEEEEEEEEEecCCCCCcEEEEE
Confidence 78999999999999999999999999999999999999998888999999999887667999999999999999999999
Q ss_pred EEEecCCCCceeEEEEEcCCCCcceEEEeCCCcEEEEEeCeecCCceeEEEEEEEeccCCCCCCCCccCceEEEEeeCcc
Q 013029 334 VVEMPLPKYTTRVSFGLEPGAVGQRTDFKEANRRLEWGLKKIVGGSEHTLRAKLTFSQESHGNITKEVGPVNMTFTIPMY 413 (451)
Q Consensus 334 ~i~iplP~~~~~~~~~~~~g~~~~~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pi~v~F~ip~~ 413 (451)
.|+||+|.++.+++++++.|+ ++|++++++|+|+|++++|+++++|+|++++++..... ...++||+|+|++|++
T Consensus 154 ~I~IP~P~~~~~~~~~~~~G~----~~y~~~~~~lvW~I~~~~g~~e~~l~~~~~l~s~~~~~-~~~~~pI~v~F~ip~~ 228 (266)
T 4en2_M 154 EIHIPVPNDADSPKFKTTVGS----VKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAED-KEGKPPISVKFEIPYF 228 (266)
T ss_dssp EEEEECCTTCEEEEEEESSSE----EEEETTTTEEEEEEEEEESSCEEEEEEEEEC-----------CCCEEEEEEEESE
T ss_pred EEEECCCCCcCcceEEecCce----EEEeccCCEEEEEEeeECCCcceEEEEEEEeCCCCCCC-cccCCcEEEEEEeCCc
Confidence 999999999999999998887 99999999999999999999999999999997643222 3458999999999999
Q ss_pred cccccEEEEEEEeecCCCCCcccceEEEEecCcEEEeC
Q 013029 414 NASKLQVKYLQIAKKSSTYNPYRWVRYVTQANSYVARI 451 (451)
Q Consensus 414 t~SGl~V~~l~v~~~~~~~~~~k~vrY~t~sg~Y~~R~ 451 (451)
++|||+|++|+|.++. +|+|+|||||+|+||+|++|+
T Consensus 229 t~SGl~V~~L~v~e~~-~y~~~kwVrY~T~sg~y~~R~ 265 (266)
T 4en2_M 229 TTSGIQVRYLKIIEKS-GYQALPWVRYITQNGDYQLRT 265 (266)
T ss_dssp ESSCCCEEEEEEECSS-CCCEEEEEEEEEECSSEEECC
T ss_pred eeCCcEEEEEEeeccC-CCCCCCCEEEEEeCCCEEEec
Confidence 9999999999999865 499999999999999999996
No 6
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=100.00 E-value=1.9e-66 Score=523.90 Aligned_cols=275 Identities=33% Similarity=0.659 Sum_probs=234.0
Q ss_pred cccccC---CC--CCcccceEEEEEEEeEEEEEcCCccEEEEEEEEEEEEEEeecCCceeEEEeccccccccCCCccccc
Q 013029 171 KSVVAN---EP--GGRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGGRSIYDY 245 (451)
Q Consensus 171 ~~~~~~---~~--~~~~~nEi~vdV~E~i~~~~~~~G~v~~~~V~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~~~~ 245 (451)
+++++| |+ ..|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|||||+|+|+||++..+++++...++.
T Consensus 103 ~~~~~~~~~~~~gi~y~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~~~~~~~~ 182 (385)
T 3ml6_A 103 PQPPPYHELEFGGSGGSRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADE 182 (385)
T ss_dssp CCCCCCEEBCSSSBCCCCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSCCEEEEEECC--------------
T ss_pred CCCCCchhccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcCcccccccccccccc
Confidence 455556 44 3479999999999999999999999999999999999999999999999999987766554332233
Q ss_pred cCCCCCCcEEeeccccccccCCCCccCCccEEEeCCCCeEEEEEEeecCCCCCCeEEEEEEEEcCceEEEEEEEEeeecC
Q 013029 246 RSSTGSGAVVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQEFKPPFRINTLVEEAGALKAEVIIKISAEFS 325 (451)
Q Consensus 246 ~~~~~~~~~~l~d~~fH~cV~~~~~~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~P~~v~~~~~~~~~~~~e~~l~l~~~~~ 325 (451)
.+.....++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.+..+||+++|++++.|.++++++++++++|+
T Consensus 183 ~~~~~~~~i~l~d~~FH~CV~l~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~Pf~i~~~v~~~~~~~vei~v~lk~~f~ 262 (385)
T 3ml6_A 183 TSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFK 262 (385)
T ss_dssp --------CCCCEEEECTTBCCCCSSSCSEEEECCCSEEEEEEEEEECSSCCCSEEEEEEEEEETTTEEEEEEEEEECSC
T ss_pred ccccccCceEccccccccccChhHccccceEEEeCCCCceEEEEEEcCCCCCCCEEEEEEEEeCCCeEEEEEEEEeecCC
Confidence 33334457889999999999999999999999999999999999999988889999999999887789999999999999
Q ss_pred CcceeeeEEEEecCCCCceeEEEEEcCCCCcceEEEeCCCcEEEEEeCeecCCceeEEEEEEEeccCCCCCCCCccCceE
Q 013029 326 ASITANTIVVEMPLPKYTTRVSFGLEPGAVGQRTDFKEANRRLEWGLKKIVGGSEHTLRAKLTFSQESHGNITKEVGPVN 405 (451)
Q Consensus 326 ~~~~~~~v~i~iplP~~~~~~~~~~~~g~~~~~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pi~ 405 (451)
.++.++||.|+||+|.++.++++.++.|+ ++|++++++++|+|++++|+++++|+|+|++.+..... ...++||+
T Consensus 263 ~~~~~~nV~I~IP~P~~~~~~~~~~~~G~----~~y~~~~~~lvW~I~k~~g~~e~~l~~~~~l~~~~~~~-~~~~~PI~ 337 (385)
T 3ml6_A 263 PSLLAQKIEVRIPTPLNTSGVQVICMKGK----AKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKK-KWARPPIS 337 (385)
T ss_dssp TTCCEEEEEEEEECCTTEEEEEEEESSSE----EEEEGGGTEEEEEEEEECSSEEEEEEEEEEECCCSSCC-SCCCCCEE
T ss_pred CcceEEEEEEEecCCCCcccceEEecCce----EEEeccCcEEEEEeeeECCCcceEEEEEEEECCCCCCc-cccCCCEE
Confidence 99999999999999999999999998887 99999999999999999999999999999997643222 24589999
Q ss_pred EEEeeCcccccccEEEEEEEeecC---CCCCcccceEEEEecCcEEEeC
Q 013029 406 MTFTIPMYNASKLQVKYLQIAKKS---STYNPYRWVRYVTQANSYVARI 451 (451)
Q Consensus 406 v~F~ip~~t~SGl~V~~l~v~~~~---~~~~~~k~vrY~t~sg~Y~~R~ 451 (451)
|+|++| +|+|||+|++|+|.++. .+|+|+|||||+|+||+|++|+
T Consensus 338 v~F~Ip-~t~SGl~Vr~L~v~e~~~~~~~y~~~kwVRYiT~sg~Y~~R~ 385 (385)
T 3ml6_A 338 MNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 385 (385)
T ss_dssp EEEEES-SCTTCCCEEEEEEECSSSCCCGGGCEEEEEECEEEEEEEECC
T ss_pred EEEEEe-ccccCCEEEEEEEecccCcccCCCccccEEEEEECCCEEecC
Confidence 999999 99999999999998873 2489999999999999999996
No 7
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.97 E-value=1.9e-31 Score=237.12 Aligned_cols=138 Identities=19% Similarity=0.247 Sum_probs=126.2
Q ss_pred CeEEEEEEeCCCCEEEEEeccCCCCc---chHHHHHHHhcccccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEeccCCC
Q 013029 1 MISQFFVLSQRGDNIVFRDYRGEVQK---GSAEIFFRKVKFWKDDGEEEAPPVFNVDGVNYFHVKVVGLLFVATTRVNVS 77 (451)
Q Consensus 1 MI~~ifIl~~~G~~li~r~y~~~~~~---~~~e~f~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~l~~v~~~~~~~n 77 (451)
||+++||+|++|+++++|+|+++..+ ...+.|++.+..+ ...++|++++++++|+|+++++|||+++++.++|
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~N 76 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLAR----KPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDN 76 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTS----CSSSCSEEEETTEEEEEEEETTEEEEEEECSSSC
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhcc----CCCCCCeEEECCEEEEEEEECCEEEEEEecCCCC
Confidence 99999999999999999999988665 2345777766542 2467999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCHHHHHhhHHHHHHHHHHhhcCCeeeeechHhhheeeecCcee
Q 013029 78 PSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIV 142 (451)
Q Consensus 78 ~~~~~~~L~~~~~~l~~y~~~l~e~~i~~n~~~v~~lldE~id~G~p~~t~~~~l~~~v~~~~~~ 142 (451)
|++++++||+++++|++|||+++|++|++||++||++||||+|+|+||+|+++.|+++|.+++..
T Consensus 77 el~~le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~l 141 (158)
T 1w63_Q 77 ELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLL 141 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999987654
No 8
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.97 E-value=6.7e-31 Score=229.82 Aligned_cols=135 Identities=21% Similarity=0.280 Sum_probs=121.6
Q ss_pred CeEEEEEEeCCCCEEEEEeccCC---CCcchHHHHHHHhcccccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEeccCCC
Q 013029 1 MISQFFVLSQRGDNIVFRDYRGE---VQKGSAEIFFRKVKFWKDDGEEEAPPVFNVDGVNYFHVKVVGLLFVATTRVNVS 77 (451)
Q Consensus 1 MI~~ifIl~~~G~~li~r~y~~~---~~~~~~e~f~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~l~~v~~~~~~~n 77 (451)
||+|+||+|++|+++++|+|++. .++...+.|++.+..+ ..+++|++++++++|+|+++++|||+++++.++|
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~----~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N 76 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVR----DAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDN 76 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTC----CTTSCSEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcC----CCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCC
Confidence 99999999999999999999943 2344467888887742 2468999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCHHHHHhhHHHHHHHHHHhhcCCeeeee-chHhhheeeecC
Q 013029 78 PSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVIDFGYVQTT-STEVLKSYVFNE 139 (451)
Q Consensus 78 ~~~~~~~L~~~~~~l~~y~~~l~e~~i~~n~~~v~~lldE~id~G~p~~t-~~~~l~~~v~~~ 139 (451)
|++++++||+++++|++|||+++|++|++||++||++||||+|+|+|++| +.+.|+.++.++
T Consensus 77 ~l~~le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~ 139 (142)
T 2vgl_S 77 NLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQ 139 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999998 467788877654
No 9
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.96 E-value=4.1e-29 Score=220.08 Aligned_cols=133 Identities=14% Similarity=0.241 Sum_probs=116.4
Q ss_pred CeEEEEEEeCCCCEEEEEeccCCCC----cchHH-HHHHHhcccccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEeccC
Q 013029 1 MISQFFVLSQRGDNIVFRDYRGEVQ----KGSAE-IFFRKVKFWKDDGEEEAPPVFNVDGVNYFHVKVVGLLFVATTRVN 75 (451)
Q Consensus 1 MI~~ifIl~~~G~~li~r~y~~~~~----~~~~e-~f~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~l~~v~~~~~~ 75 (451)
||+++||+|.+|+++++|+|+++.. +...+ .+++++.+ ..+|++.++++.++|+++++|||+++++.+
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r-------~~~~i~~~~~~~~vy~~~~~Lyfv~~~~~~ 84 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHR-------TDSEIALLEGLTVVYKSSIDLYFYVIGSSY 84 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSS-------CCCCEEEETTEEEEEEECSSCEEEEEEETT
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-------CCCCEEEECCEEEEEEEECCEEEEEEEcCC
Confidence 9999999999999999999998632 23334 35555422 237999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHh-cccCHHHHHhhHHHHHHHHHHhhcCCeeeeechHhhheeeecCc
Q 013029 76 VSPSLVLELLQRIARVIKDYL-GVLNEDSLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEP 140 (451)
Q Consensus 76 ~n~~~~~~~L~~~~~~l~~y~-~~l~e~~i~~n~~~v~~lldE~id~G~p~~t~~~~l~~~v~~~~ 140 (451)
+|++.++++||+++++|+.|| |+++|.+|++||+++|++||||+|+|+||+|+++.|...|.+++
T Consensus 85 eNel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~ 150 (153)
T 3tjz_C 85 ENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRG 150 (153)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC----
T ss_pred CChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhccc
Confidence 999999999999999999999 89999999999999999999999999999999999999887654
No 10
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=99.00 E-value=8.7e-07 Score=85.66 Aligned_cols=209 Identities=20% Similarity=0.319 Sum_probs=132.8
Q ss_pred ccceEEEEEEEeEEEEEcCCccEEEEEEEEEEEEEEeecC-------CceeEEEeccccccccCCCccccccCCCCCCcE
Q 013029 182 KREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTG-------NPEIRLALNDDLLIGKGGRSIYDYRSSTGSGAV 254 (451)
Q Consensus 182 ~~nEi~vdV~E~i~~~~~~~G~v~~~~V~G~i~~~s~LsG-------~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~~~~ 254 (451)
...++-..+.|.||+.+. +|.+.++.|.|+|.+. |..| -+.+.++|++-..+++
T Consensus 66 ~~pGLnASI~E~VNA~Fk-gg~~tk~~v~GEiaLs-y~~~~~s~~p~p~~l~fRL~N~~~Lek----------------- 126 (328)
T 3g9h_A 66 SQFGLNASIAEVLNASFK-DGMLQNSQLIGEIALN-YLPNSVMNSPLPIGINLRINNGAKFEK----------------- 126 (328)
T ss_dssp -CCEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEE-EECCSSSCCCCCSEEEEEEETGGGEEE-----------------
T ss_pred CCCceeEEEEEEEEEEEE-CCcEEEEEEEEEEEEe-cCCCccccCCCCccEEEEecCcchhhe-----------------
Confidence 345788899999999998 6789999999998775 4554 2457778865332221
Q ss_pred EeeccccccccCCCCccCCccEEEeCC---CCeEEEEEEeecCCCCCCeEEEEEEEEcC-ceEEEEEEEEeeecCC---c
Q 013029 255 VLDDCNFHESVRLDSFDVDRTLSLVPP---DGEFPVMNYRMTQEFKPPFRINTLVEEAG-ALKAEVIIKISAEFSA---S 327 (451)
Q Consensus 255 ~l~d~~fH~cV~~~~~~~~~~i~F~PP---dG~F~Lm~Yr~~~~~~~P~~v~~~~~~~~-~~~~e~~l~l~~~~~~---~ 327 (451)
.+-+-+|-.++.-..| .|-++ ...-.+|+|+++. ...|+.+.+...... +..+-+..++.+.+.. .
T Consensus 127 v~pN~~fv~~~~~~eF------~vn~~~L~sktv~~lKYqVs~-~~~PL~l~p~WK~E~~qtsliI~Yk~NP~~~~~~~~ 199 (328)
T 3g9h_A 127 VILNQAFIERVAPEEF------KVNPSFIDSRTLGAIKYSIKE-PIAPIVIHPVWRFESHQASVVLTVKMSPSLPDEISQ 199 (328)
T ss_dssp EEECTTTEEEEETTEE------EECTTTTBTCEEEEEEEEEES-CCCSEEEEEEEEECSSEEEEEEEEEECTTSCTTCCE
T ss_pred eeCCHHHhccCCCCCE------EEchHHhcccceeeEEEEECC-CCCCeEEEeeeecCCCeeEEEEEEEECCCCcCcCCC
Confidence 1111222222221111 11111 1235689999975 779999998776533 2233333334344554 5
Q ss_pred ceeeeEEEEecCCC-CceeEEEEEcCCCCcceEEEeCCCcEEEEEeCe-e--cCCce-eEEEEEEEeccCCCCCCCCccC
Q 013029 328 ITANTIVVEMPLPK-YTTRVSFGLEPGAVGQRTDFKEANRRLEWGLKK-I--VGGSE-HTLRAKLTFSQESHGNITKEVG 402 (451)
Q Consensus 328 ~~~~~v~i~iplP~-~~~~~~~~~~~g~~~~~~~~~~~~~~l~W~I~~-~--~~~~~-~~l~~~~~~~~~~~~~~~~~~~ 402 (451)
..++||.+.+|+.. .++++...+ . +.|..+++.+.|+|+. + ..+.+ ..|.|.|....... +. -.
T Consensus 200 ~~L~Nv~~~V~ldGa~ats~qskP-~------gtwn~e~~ri~Wkl~e~l~l~~~g~~gkLiARf~~~g~~~---~~-~~ 268 (328)
T 3g9h_A 200 IVIEDLVVFVNIDGANATSALSKP-Q------GSFSKEKKRITWRFKEPVVLTRNGEGQRLIARFITDGLAH---ES-AK 268 (328)
T ss_dssp EEEEEEEEEEEBCSSCEEEEEESS-S------CCBCSSSCEEEEECSSCEEEETTCCCEEEEEEEEESSCCC---BC-SS
T ss_pred ceeeeEEEEEEeCCCceeEEEecC-C------ceeccccCEEEEECCCCcccccCCCCCeEEEEEEcCCCCC---CC-CC
Confidence 67899999999977 344554433 2 4578999999999998 3 32223 68999998833221 11 12
Q ss_pred ceEEEEeeCcc---------cccccEEEEEEEee
Q 013029 403 PVNMTFTIPMY---------NASKLQVKYLQIAK 427 (451)
Q Consensus 403 pi~v~F~ip~~---------t~SGl~V~~l~v~~ 427 (451)
.+.++|++.+. .-|||.|......+
T Consensus 269 gV~akF~~~~~~~~~~~~~~~gsgi~i~~~~~~~ 302 (328)
T 3g9h_A 269 GVITKFTISETDNVALPHSGAGSGITLTCQELDE 302 (328)
T ss_dssp CEEEEEEECCCSCSSCTTTTCSCCCEEEEEEESS
T ss_pred cEEEEEEEeCCCcccccccccCCceeEEeccccc
Confidence 39999999875 46799999887764
No 11
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=88.45 E-value=4.4 Score=36.02 Aligned_cols=96 Identities=7% Similarity=0.086 Sum_probs=60.7
Q ss_pred CeEEEEEEeC-CCCEEEEEeccCCC---CcchHHHHHHHhcccccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEeccCC
Q 013029 1 MISQFFVLSQ-RGDNIVFRDYRGEV---QKGSAEIFFRKVKFWKDDGEEEAPPVFNVDGVNYFHVKVVGLLFVATTRVNV 76 (451)
Q Consensus 1 MI~~ifIl~~-~G~~li~r~y~~~~---~~~~~e~f~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~l~~v~~~~~~~ 76 (451)
||....|.-. +|-+|.+-.--+.. .+.....+.+.++.... +....--.++.++..|.|...+++.++|+++.+.
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~-~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~y 80 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN-EQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAF 80 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCC-TTSCSEEEEEETTEEEEEEEETTEEEEEEEETTS
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcC-CCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCc
Confidence 6766677643 56666653321111 12223344444443211 0011112466788888888899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhc
Q 013029 77 SPSLVLELLQRIARVIKDYLG 97 (451)
Q Consensus 77 n~~~~~~~L~~~~~~l~~y~~ 97 (451)
+.-.++.||..+.+-+..-++
T Consensus 81 p~r~af~fL~~i~~~F~~~~~ 101 (196)
T 2nut_C 81 PKKLAFAYLEDLHSEFDEQHG 101 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhcc
Confidence 999999999999987776555
No 12
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=88.05 E-value=3.1 Score=36.25 Aligned_cols=49 Identities=8% Similarity=0.202 Sum_probs=42.9
Q ss_pred EEEeCCEEEEEEEeCCEEEEEEeccCCCHHHHHHHHHHHHHHHHHHhcc
Q 013029 50 VFNVDGVNYFHVKVVGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGV 98 (451)
Q Consensus 50 i~~~~~~~~~~~~~~~l~~v~~~~~~~n~~~~~~~L~~~~~~l~~y~~~ 98 (451)
.++.++..|-|...+++.++|+++.+-.-..++.||..+.+-+..-++.
T Consensus 87 s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~eF~~~y~~ 135 (169)
T 2vx8_A 87 TYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGS 135 (169)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHHHHHHHHhhh
Confidence 5677898888888899999999999999999999999999888776653
No 13
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=87.48 E-value=7.3 Score=32.71 Aligned_cols=92 Identities=10% Similarity=0.130 Sum_probs=61.9
Q ss_pred eEEEEEEeCCCCEEEEEeccCCCC---c-chHHHHHHHhccc-ccCCCCCCCCEE-EeCCEEEEEEEeCCEEEEEEeccC
Q 013029 2 ISQFFVLSQRGDNIVFRDYRGEVQ---K-GSAEIFFRKVKFW-KDDGEEEAPPVF-NVDGVNYFHVKVVGLLFVATTRVN 75 (451)
Q Consensus 2 I~~ifIl~~~G~~li~r~y~~~~~---~-~~~e~f~~~~~~~-~~~~~~~~~pi~-~~~~~~~~~~~~~~l~~v~~~~~~ 75 (451)
+.+|+|.|++|=+|+.-...+... | +-+..|-....+- |.. -++...++ .+++..+++.....+++-.++..+
T Consensus 38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLg-lGknksII~~Y~~yqvVq~n~~Plvit~Ias~~ 116 (143)
T 3cpt_A 38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLG-LSKNKSIICYYNTYQVVQFNRLPLVVSFIASSS 116 (143)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHT-CCCEEEEEEECSSEEEEEEEETTEEEEEEEETT
T ss_pred eEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcC-CCCCceEEEEecCeEEEEEecCCEEEEEEecCC
Confidence 578999999999999988754322 1 1122333222110 111 23334444 678888999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 013029 76 VSPSLVLELLQRIARVIKD 94 (451)
Q Consensus 76 ~n~~~~~~~L~~~~~~l~~ 94 (451)
.|.-.++++=+.+..+|++
T Consensus 117 aNtG~Il~Le~~L~p~l~~ 135 (143)
T 3cpt_A 117 ANTGLIVSLEKELAPLFEE 135 (143)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCchhHhhhHHHHHHHHHH
Confidence 9998888776666666655
No 14
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=87.31 E-value=6 Score=34.97 Aligned_cols=83 Identities=10% Similarity=0.121 Sum_probs=57.8
Q ss_pred CCCCEEEEEeccCCCCcchHHHHHHHhcccccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEeccCCCHHHHHHHHHHHH
Q 013029 10 QRGDNIVFRDYRGEVQKGSAEIFFRKVKFWKDDGEEEAPPVFNVDGVNYFHVKVVGLLFVATTRVNVSPSLVLELLQRIA 89 (451)
Q Consensus 10 ~~G~~li~r~y~~~~~~~~~e~f~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~l~~v~~~~~~~n~~~~~~~L~~~~ 89 (451)
.+|..+++.+=. ... ....+.+.++.... ....--.++.++..|-|...+++.++|+++.+-.--.+|.||..+.
T Consensus 10 Arg~~iLae~t~--~~g-nf~~ia~~iL~kip--~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~ 84 (189)
T 4b93_A 10 ARGTTILAKHAW--CGG-NFLEVTEQILAKIP--SENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVK 84 (189)
T ss_dssp EETTEEEEEEES--SEE-CHHHHHHHHHTTCC--SSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHH
T ss_pred EeCCEEEEeCCC--CCC-CHHHHHHHHHHhCC--CCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHH
Confidence 468888887522 122 23333444443211 1112225678999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 013029 90 RVIKDYLG 97 (451)
Q Consensus 90 ~~l~~y~~ 97 (451)
+-+..-+|
T Consensus 85 ~eF~~~~~ 92 (189)
T 4b93_A 85 KRFQTTYG 92 (189)
T ss_dssp HHHHHHHG
T ss_pred HHHHhhcc
Confidence 88777665
No 15
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=85.98 E-value=14 Score=33.34 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.4
Q ss_pred CeEEEEEEeCCCCEEEEEeccCCC
Q 013029 1 MISQFFVLSQRGDNIVFRDYRGEV 24 (451)
Q Consensus 1 MI~~ifIl~~~G~~li~r~y~~~~ 24 (451)
||.+|+|+|+.|..|.+|.|....
T Consensus 2 ~i~sl~IiNk~GglIY~r~~~~~~ 25 (219)
T 3cue_A 2 AIETILVINKSGGLIYQRNFTNDE 25 (219)
T ss_dssp CEEEEEEECTTSCEEEEEECSSCC
T ss_pred eeEEEEEEeCCCCEEeehhhccCc
Confidence 589999999999999999997543
No 16
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=83.82 E-value=15 Score=31.93 Aligned_cols=83 Identities=11% Similarity=0.140 Sum_probs=58.2
Q ss_pred CCCCEEEEEeccCCCCcchHHHHHHHhcccccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEeccCCCHHHHHHHHHHHH
Q 013029 10 QRGDNIVFRDYRGEVQKGSAEIFFRKVKFWKDDGEEEAPPVFNVDGVNYFHVKVVGLLFVATTRVNVSPSLVLELLQRIA 89 (451)
Q Consensus 10 ~~G~~li~r~y~~~~~~~~~e~f~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~l~~v~~~~~~~n~~~~~~~L~~~~ 89 (451)
.+|..+++.+=.. . ...+.+.+.++... +....--.++.++..|-|...+++.++|+++.+..--.+|.||..+.
T Consensus 62 Arg~tiLAE~t~~--~-gnf~~va~~iL~ki--p~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI~ 136 (173)
T 4afi_A 62 ARGTTILAKHAWC--G-GNFLEVTEQILAKI--PSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVK 136 (173)
T ss_dssp EETTEEEEEEESS--C-CCHHHHHHHHHTTS--CSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHH
T ss_pred ECCCEEEEEccCC--C-CCHHHHHHHHHHhC--CCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHHH
Confidence 4677888865322 2 22334455555421 11111235678999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 013029 90 RVIKDYLG 97 (451)
Q Consensus 90 ~~l~~y~~ 97 (451)
+-+..-+|
T Consensus 137 ~eF~~~yg 144 (173)
T 4afi_A 137 KRFQTTYG 144 (173)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHhc
Confidence 88777665
No 17
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=83.71 E-value=3.3 Score=34.63 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=44.9
Q ss_pred CeEEEEEEeCCCCEEEEEeccC-CCCcchHHHHHHHhcccccCCC---CC------CCCEEEe-------CCEEEEEE--
Q 013029 1 MISQFFVLSQRGDNIVFRDYRG-EVQKGSAEIFFRKVKFWKDDGE---EE------APPVFNV-------DGVNYFHV-- 61 (451)
Q Consensus 1 MI~~ifIl~~~G~~li~r~y~~-~~~~~~~e~f~~~~~~~~~~~~---~~------~~pi~~~-------~~~~~~~~-- 61 (451)
||+.+.|++.+|++|..-+=-+ ......+-+|..+++.++-.+. +. ..+++.+ ++..+.|+
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 9999999999999998755211 2223346678888766421110 11 3467777 66666665
Q ss_pred EeCCEEEEEEe
Q 013029 62 KVVGLLFVATT 72 (451)
Q Consensus 62 ~~~~l~~v~~~ 72 (451)
+...||||+.-
T Consensus 81 kQP~LyfVvty 91 (158)
T 1nrj_A 81 KQPELYFVVTF 91 (158)
T ss_dssp ETTEEEEEEEE
T ss_pred CCCcEEEEEEe
Confidence 45578888775
No 18
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=82.04 E-value=5.8 Score=33.51 Aligned_cols=91 Identities=14% Similarity=0.303 Sum_probs=55.7
Q ss_pred CeEEEEEEeCCCCEEEEEeccCCCC-c-c-hH------------HHHHHHhcccccCCCCCCCCEEEeCCE-EEEEEEeC
Q 013029 1 MISQFFVLSQRGDNIVFRDYRGEVQ-K-G-SA------------EIFFRKVKFWKDDGEEEAPPVFNVDGV-NYFHVKVV 64 (451)
Q Consensus 1 MI~~ifIl~~~G~~li~r~y~~~~~-~-~-~~------------e~f~~~~~~~~~~~~~~~~pi~~~~~~-~~~~~~~~ 64 (451)
||.+++|+|++|.+|.+|.|..... + + .- ..+..++.. .. ....--.+.++.. .++|....
T Consensus 2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp-~~--~~~~~~~~~t~~ykl~~~~T~T 78 (145)
T 2j3t_C 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSP-LD--MKDGFLSFQTSRYKLHYYETPT 78 (145)
T ss_dssp CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCS-SC--CSSCEEEEECSSCEEEEEECTT
T ss_pred eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCC-CC--CCCceEEEecCCEEEEEEEcCC
Confidence 5889999999999999999964321 1 1 11 112222211 00 0111123345554 56777788
Q ss_pred CEEEEEEeccCCCHHHHHHHHHHHH-HHHHHHh
Q 013029 65 GLLFVATTRVNVSPSLVLELLQRIA-RVIKDYL 96 (451)
Q Consensus 65 ~l~~v~~~~~~~n~~~~~~~L~~~~-~~l~~y~ 96 (451)
++.|+++++..++. +-++|+++. ++.-+|.
T Consensus 79 giKFvl~td~~~~~--i~~~l~~iy~~lYv~~v 109 (145)
T 2j3t_C 79 GIKVVMNTDLGVGP--IRDVLHHIYSALYVEFV 109 (145)
T ss_dssp SCEEEEEECTTCCC--CHHHHHHHHHTTHHHHT
T ss_pred CCEEEEEecCCcch--HHHHHHHHHHHHHHHHH
Confidence 99999999876554 456777777 6666654
No 19
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=81.82 E-value=13 Score=32.72 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=59.3
Q ss_pred CeEEEEEEeCCCCEEEEEeccCCCCcchHHHHHHHhcccccCCCCCCCCEEEeCCEEEEEEEeC--CEEEEEEeccCCCH
Q 013029 1 MISQFFVLSQRGDNIVFRDYRGEVQKGSAEIFFRKVKFWKDDGEEEAPPVFNVDGVNYFHVKVV--GLLFVATTRVNVSP 78 (451)
Q Consensus 1 MI~~ifIl~~~G~~li~r~y~~~~~~~~~e~f~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~--~l~~v~~~~~~~n~ 78 (451)
|++.+.|+++.|=+|-+..-......+.+..+.+.++-.. ....+.+.+++..+=+...| +|.||++-.+-...
T Consensus 10 ~~D~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEE----R~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L 85 (185)
T 2fh5_A 10 MVDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQE----RGGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTL 85 (185)
T ss_dssp SCSEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC-----------CCCCCEEEEEEETTTTEEEEEEESCGGGH
T ss_pred ceeEEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhcc----ccCCCceeEcCeEEEEEEeccCCEEEEEEEcccccc
Confidence 8899999999999998843222223455777777765322 22234577888888777776 58888887665566
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 013029 79 SLVLELLQRIARVIKDYL 96 (451)
Q Consensus 79 ~~~~~~L~~~~~~l~~y~ 96 (451)
..+-+||..+...+.+.+
T Consensus 86 ~YiD~LL~~v~~~Fv~~Y 103 (185)
T 2fh5_A 86 TYVDKLIDDVHRLFRDKY 103 (185)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 666677777766666555
No 20
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=79.34 E-value=23 Score=29.64 Aligned_cols=48 Identities=13% Similarity=-0.070 Sum_probs=38.6
Q ss_pred EEEeCCEEEEEE-EeCCEEEEEEeccCCCHHHHHHHHHHHHHHHHHHhc
Q 013029 50 VFNVDGVNYFHV-KVVGLLFVATTRVNVSPSLVLELLQRIARVIKDYLG 97 (451)
Q Consensus 50 i~~~~~~~~~~~-~~~~l~~v~~~~~~~n~~~~~~~L~~~~~~l~~y~~ 97 (451)
-++.++..+-|. ..+++.++|+++.+-.-..++.||+.+.+-...-++
T Consensus 62 sv~~~~y~fH~~~~~~gl~~l~i~D~~yp~rvAF~~L~~i~~eF~~~y~ 110 (144)
T 3bw6_A 62 SIEEGNYIGHVYARSEGICGVLITDKEYPVRPAYTLLNKILDEYLVAHP 110 (144)
T ss_dssp EEEETTEEEEEEECTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEeCCEEEEEEEecCCEEEEEEECCCCChhHHHHHHHHHHHHHHHHcc
Confidence 456788777776 668999999999999999999999988776655444
No 21
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=77.12 E-value=19 Score=30.06 Aligned_cols=93 Identities=8% Similarity=0.037 Sum_probs=54.1
Q ss_pred eEEEEEEeCCCCEEEEEeccCCCCcc---hH-HH--H--HHHh--cccccCCCCCCCCEEEeC---C-EEEEEEEeCCEE
Q 013029 2 ISQFFVLSQRGDNIVFRDYRGEVQKG---SA-EI--F--FRKV--KFWKDDGEEEAPPVFNVD---G-VNYFHVKVVGLL 67 (451)
Q Consensus 2 I~~ifIl~~~G~~li~r~y~~~~~~~---~~-e~--f--~~~~--~~~~~~~~~~~~pi~~~~---~-~~~~~~~~~~l~ 67 (451)
|.+++|+|++|++|..+.|....... .. .. | +..+ .... .+.....-...++ + ..++|....++-
T Consensus 6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~-~~~~~~~~l~~~~~~~~y~v~~~~T~tg~K 84 (142)
T 2j3w_A 6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDEN-MWLSNNMYLKTVDKFNEWFVSAFVTAGHMR 84 (142)
T ss_dssp CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHH-GGGCSCSEEEEEEEETTEEEEEEECTTCCE
T ss_pred EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHh-cCCCCcceeEeeecccceEEEEEEcCCCcE
Confidence 57899999999999999996542211 11 01 1 1111 1100 0111121222332 2 246777788999
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHHHHHHh
Q 013029 68 FVATTRVNVSPSLVLELLQRIARVIKDYL 96 (451)
Q Consensus 68 ~v~~~~~~~n~~~~~~~L~~~~~~l~~y~ 96 (451)
|+++++.. +...+-++|+++.++.-+|+
T Consensus 85 fvl~~d~~-~~~~i~~~~~~iy~~Y~~~v 112 (142)
T 2j3w_A 85 FIMLHDVR-QEDGIKNFFTDVYDLYIKFA 112 (142)
T ss_dssp EEEEESSC-CHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCC-CcHHHHHHHHHHHHHHHHHh
Confidence 99999753 35556677788777766665
No 22
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=70.87 E-value=13 Score=31.79 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=52.0
Q ss_pred CeEEEEEEeCCCCEEEEEeccCC-------CC-cchH-H------------HHHHHhcccccCCCCCCCCEE--EeCC-E
Q 013029 1 MISQFFVLSQRGDNIVFRDYRGE-------VQ-KGSA-E------------IFFRKVKFWKDDGEEEAPPVF--NVDG-V 56 (451)
Q Consensus 1 MI~~ifIl~~~G~~li~r~y~~~-------~~-~~~~-e------------~f~~~~~~~~~~~~~~~~pi~--~~~~-~ 56 (451)
||.+++|+|++|++|..|.|... .+ +... + .|.+++. +......+. +++. .
T Consensus 2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls-----~~~~~~~f~~~~T~~yk 76 (159)
T 3cue_C 2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLS-----KGSVKNDIRSISTGKYR 76 (159)
T ss_dssp CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSC-----CSSSCCCEEEEECSSCB
T ss_pred eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhC-----CCCCCCCeEEEeeCCEE
Confidence 58899999999999999999531 10 1111 1 1111111 111122332 3333 3
Q ss_pred EEEEEEeCCEEEEEEeccCCCHHHHHHHHHHHHH-HHHHHh
Q 013029 57 NYFHVKVVGLLFVATTRVNVSPSLVLELLQRIAR-VIKDYL 96 (451)
Q Consensus 57 ~~~~~~~~~l~~v~~~~~~~n~~~~~~~L~~~~~-~l~~y~ 96 (451)
.++|..-.++.||++++..++. +-++|+++.+ +.-+|.
T Consensus 77 l~~~eT~TgiKFvl~td~~~~~--i~~~l~~iy~~lYv~yv 115 (159)
T 3cue_C 77 VHTYCTASGLWFVLLSDFKQQS--YTQVLQYIYSHIYVKYV 115 (159)
T ss_dssp EEEECCSSCCEEEEECCSSSSC--THHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCEEEEEeCCCcch--HHHHHHHHHHHHHHHHH
Confidence 4566777899999999876554 3466777776 766665
No 23
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=59.21 E-value=20 Score=31.90 Aligned_cols=93 Identities=11% Similarity=0.096 Sum_probs=58.6
Q ss_pred eEEEEEEeCCCC-E-EEEEecc----CCCCcchHHHH---HH-HhcccccCCCCCCCCEEEeCCEEEE-EEEeCCEEEEE
Q 013029 2 ISQFFVLSQRGD-N-IVFRDYR----GEVQKGSAEIF---FR-KVKFWKDDGEEEAPPVFNVDGVNYF-HVKVVGLLFVA 70 (451)
Q Consensus 2 I~~ifIl~~~G~-~-li~r~y~----~~~~~~~~e~f---~~-~~~~~~~~~~~~~~pi~~~~~~~~~-~~~~~~l~~v~ 70 (451)
|-+|.|+...|+ + ++...|. +...|..+.+| .. .+... .... .--.++.++..|. |...+++.++|
T Consensus 4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r--~~~~-~r~s~~~~~y~fH~y~~~~gl~yl~ 80 (199)
T 3kyq_A 4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVER--SAKG-SRASVKEQEYLCHVYVRSDSLAGVV 80 (199)
T ss_dssp EEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHT--SCTT-EEEEEECSSEEEEEEECTTSEEEEE
T ss_pred EEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhc--CCCC-CeEEEEeCCEEEEEEEecCCEEEEE
Confidence 457778865444 3 3444442 12335554433 33 33331 1111 1124556777666 77788999999
Q ss_pred EeccCCCHHHHHHHHHHHHHHHHHHhc
Q 013029 71 TTRVNVSPSLVLELLQRIARVIKDYLG 97 (451)
Q Consensus 71 ~~~~~~n~~~~~~~L~~~~~~l~~y~~ 97 (451)
+++.+-+--.++.||..+.+-+..-++
T Consensus 81 itd~~yp~r~AF~fL~ei~~eF~~~~~ 107 (199)
T 3kyq_A 81 IADSEYPSRVAFTLLEKVLDEFSKQVD 107 (199)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999887776665
No 24
>3vjz_A DMP19, putative uncharacterized protein; helix bundle, DNA mimic, gene regulation; 1.80A {Neisseria meningitidis}
Probab=35.22 E-value=8.7 Score=33.11 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcccCHHH-----HHhhHHHHHHHHH-HhhcCCeee
Q 013029 75 NVSPSLVLELLQRIARVIKDYLGVLNEDS-----LRKNFVLVYELLD-EVIDFGYVQ 125 (451)
Q Consensus 75 ~~n~~~~~~~L~~~~~~l~~y~~~l~e~~-----i~~n~~~v~~lld-E~id~G~p~ 125 (451)
+.++...-+||+.|.+...+.+|.+++++ --.+..+.|.+|| |+.++|+.|
T Consensus 10 ~~~~~~~d~fl~~~~da~~~~i~~l~~e~m~~Ls~~Q~tLLAy~~L~~EV~~GGFvQ 66 (166)
T 3vjz_A 10 DIRQQEPSALLYTLVSAYLEHTAQTGDESLSCLSDDQHTLTAFCYLDSQVEEGGFVQ 66 (166)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHHHHCTTSSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccChHHHHHHHHHHHHHHHHHhhHHHHHHcCHHHHHHHHHHHHHHHHHcCChHh
Confidence 45566677899999999998887544433 3455577787676 667889988
Done!