Query 013030
Match_columns 451
No_of_seqs 60 out of 62
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 20:54:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013030.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013030hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gy6a_ d.17.4.2 (A:) Nuclear 37.9 6 0.00044 31.2 1.7 45 229-273 37-93 (125)
2 d1wnaa1 d.319.1.1 (A:1-127) Hy 24.7 31 0.0022 28.5 3.9 62 322-396 31-100 (127)
3 d1zo2a1 d.17.4.2 (A:10-126) Nu 22.4 11 0.00082 28.9 0.7 45 229-273 33-89 (117)
4 d1jkga_ d.17.4.2 (A:) NTF2-rel 21.1 15 0.0011 29.4 1.2 45 229-273 44-104 (139)
5 d2h2ja2 b.85.7.3 (A:50-310) Ru 20.8 42 0.003 27.3 4.1 16 365-380 6-21 (261)
6 d1gy7a_ d.17.4.2 (A:) Nuclear 17.1 20 0.0015 27.7 1.1 44 229-272 34-90 (121)
7 d2pi2a1 b.40.4.3 (A:44-171) Re 14.9 50 0.0036 25.7 3.0 18 251-268 73-90 (128)
8 d1u0ma2 c.95.1.2 (A:202-349) P 13.7 27 0.002 28.0 1.0 18 385-402 116-133 (148)
9 d1ogya1 b.52.2.2 (A:682-801) P 13.0 41 0.003 25.7 1.9 32 253-287 49-85 (120)
10 d1ueba2 b.40.4.5 (A:64-126) El 12.5 70 0.0051 22.7 3.0 25 388-415 39-63 (63)
No 1
>d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=37.86 E-value=6 Score=31.21 Aligned_cols=45 Identities=18% Similarity=0.440 Sum_probs=32.1
Q ss_pred Hhh--hhhcchhhHHhhhhhCCccc----cc------ccCCCcEEEEEEEEEecccc
Q 013030 229 FGW--NTFWGRKAIISYIARYPDAE----LR------NAKNGQFVKISGVVTCGNVP 273 (451)
Q Consensus 229 ~iW--N~~~~~~~i~rfl~k~Pdt~----Lr------~akdGQ~VKItG~VtCG~vP 273 (451)
++| +.+.+..+|..+|.++|-.+ +. +..++=+|.|+|.|++++.|
T Consensus 37 l~~~g~~~~G~~~I~~~l~~lp~~~~~~~i~~~D~Q~~~~~~ili~V~G~~~~~~~~ 93 (125)
T d1gy6a_ 37 LTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDP 93 (125)
T ss_dssp EEETTEEEESHHHHHHHHHHCSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEETTSC
T ss_pred EEECCccccCHHHHHHHHHcCCCcccEEEEeEEEEEEcCCCCEEEEEEEEEEECCCC
Confidence 456 44567899999999999553 22 23456789999999887654
No 2
>d1wnaa1 d.319.1.1 (A:1-127) Hypothetical protein TTHA1528 (TT1805) {Thermus thermophilus [TaxId: 274]}
Probab=24.66 E-value=31 Score=28.51 Aligned_cols=62 Identities=23% Similarity=0.326 Sum_probs=39.3
Q ss_pred ceEEeecCC-----ceeEEEEeCCCCeeeEeeecceeEecCCCC---CCCCHHHHHHHHhcCCCCCCceeEEeeeeeeeC
Q 013030 322 DFYISDFQS-----GLRALVKTGYGARVTPYVDDSLAIDVNPGK---EELSPEFIRWLAERNLSSDDRIMRLKEGYIKEG 393 (451)
Q Consensus 322 DFYISDfqS-----GlRALVKaG~GakVtp~V~es~vvd~g~~~---kdlS~~f~~WL~erNLSsd~r~mRlkEGyIkEG 393 (451)
-.||+|.|. +.-+||..|.. +.+..+- .|+.. ..+=.||.+||.+|+. =+.+|-.|-.|
T Consensus 31 ~~lITDwQdqR~qArya~lv~~Gk~----~ll~~dA---FGPafp~G~~ALaELv~wl~~~G~------r~~~EaVv~p~ 97 (127)
T d1wnaa1 31 VYLITDWQDKRDQARYALLLHTGKK----DLLVPDA---FGPAFPGGEEALSELVGLLLAQGA------RRFYEAVVSPG 97 (127)
T ss_dssp EEEEEECCSSTTSCCEEEEEECSSC----EEEEEEE---ESTTSTTHHHHHHHHHHHHHHTTC------CEEEEEEECGG
T ss_pred EEEEecccchhhhhhhHHHhhcCCc----ccccccc---cCCCCccHHHHHHHHHHHHHHcCC------chhhhhhcCHH
Confidence 369999875 55677777764 3333332 23321 2334689999999985 26778877776
Q ss_pred CeE
Q 013030 394 STV 396 (451)
Q Consensus 394 stV 396 (451)
|-.
T Consensus 98 e~~ 100 (127)
T d1wnaa1 98 EMT 100 (127)
T ss_dssp GHH
T ss_pred HHH
Confidence 644
No 3
>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2) {Cryptosporidium parvum [TaxId: 5807]}
Probab=22.44 E-value=11 Score=28.94 Aligned_cols=45 Identities=22% Similarity=0.420 Sum_probs=31.2
Q ss_pred Hhh--hhhcchhhHHhhhhhCCcc----cccc------cCCCcEEEEEEEEEecccc
Q 013030 229 FGW--NTFWGRKAIISYIARYPDA----ELRN------AKNGQFVKISGVVTCGNVP 273 (451)
Q Consensus 229 ~iW--N~~~~~~~i~rfl~k~Pdt----~Lr~------akdGQ~VKItG~VtCG~vP 273 (451)
++| +.+.++.+|..+|.++|-. ++.+ .-+|=+|-|+|.+++.+.|
T Consensus 33 l~~~g~~~~G~~~I~~~l~~l~~~~~~~~i~~~D~Qp~~~~~ili~V~G~~~~~~~~ 89 (117)
T d1zo2a1 33 LTWEDTQFQGQANIVNKFNSLNFQRVQFEITRVDCQPSPNNGSIVFVTGDVRIDDGQ 89 (117)
T ss_dssp EEETTEEEESHHHHHHHHHHHCCSCEEEEEEEEEEEECTBSSEEEEEEEEEEETTCC
T ss_pred EEECCCcccCHHHHHHHHHhCCCccceEEEeeEEEEEcCCCCEEEEEEEEEEeCCCC
Confidence 446 4456788899999988843 2222 4456789999999987654
No 4
>d1jkga_ d.17.4.2 (A:) NTF2-related export protein 1 (p15) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.07 E-value=15 Score=29.37 Aligned_cols=45 Identities=20% Similarity=0.414 Sum_probs=32.3
Q ss_pred Hhh--hhhcchhhHHhhhhhCCccccc--c-----cC-------CCcEEEEEEEEEecccc
Q 013030 229 FGW--NTFWGRKAIISYIARYPDAELR--N-----AK-------NGQFVKISGVVTCGNVP 273 (451)
Q Consensus 229 ~iW--N~~~~~~~i~rfl~k~Pdt~Lr--~-----ak-------dGQ~VKItG~VtCG~vP 273 (451)
|+| |.+.++.+|..++..+|.++.. + .. .|=+|.|+|.|+..+.|
T Consensus 44 l~~~g~~~~G~~~I~~~l~~lp~~~~~i~~~D~q~~~~~~~~~~~~ilI~V~G~v~~~~~~ 104 (139)
T d1jkga_ 44 LVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNK 104 (139)
T ss_dssp EEETTEEEESHHHHHHHHHHSCCEEEEEEEEEEEECCTTTSTTCCEEEEEEEEEEEETTSC
T ss_pred EEECCeeccCHHHHHHHHHhCCCceeEEEEEEEEEcCcccccCCCeEEEEEEEEEEcCCCC
Confidence 567 5667789999999999987542 1 11 13479999999887654
No 5
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=20.77 E-value=42 Score=27.34 Aligned_cols=16 Identities=25% Similarity=0.661 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCCCCCC
Q 013030 365 PEFIRWLAERNLSSDD 380 (451)
Q Consensus 365 ~~f~~WL~erNLSsd~ 380 (451)
..|.+|+.++|+-.++
T Consensus 6 ~~~~~W~~~~g~~~~~ 21 (261)
T d2h2ja2 6 QTFWKWLQEEGVITAK 21 (261)
T ss_dssp HHHHHHHHTTTSSCSS
T ss_pred HHHHHHHHHCCCccCC
Confidence 3699999999998876
No 6
>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.15 E-value=20 Score=27.72 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=30.7
Q ss_pred Hhh--hhhcchhhHHhhhhhCCcc----cccc------cCCC-cEEEEEEEEEeccc
Q 013030 229 FGW--NTFWGRKAIISYIARYPDA----ELRN------AKNG-QFVKISGVVTCGNV 272 (451)
Q Consensus 229 ~iW--N~~~~~~~i~rfl~k~Pdt----~Lr~------akdG-Q~VKItG~VtCG~v 272 (451)
++| |.+.++..|..+|.++|-. ++.+ ..+| =+|-|+|.+++.+.
T Consensus 34 l~~~g~~~~G~~~I~~~l~~lp~~~~~~~i~~~D~Qp~~~~~~ili~V~G~~~~~~~ 90 (121)
T d1gy7a_ 34 LTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPYGDVLVMITGDLLIDEE 90 (121)
T ss_dssp EEETTEEEESHHHHHHHHHHSCCSCEEEEEEEEEEEESSTTSCEEEEEEEEEEETTC
T ss_pred EEECCeEecCHHHHHHHHHhCCCcccEEEEeeEeeEEccCCCeEEEEEEEEEEECCC
Confidence 567 4557789999999999943 2221 2334 46899999998764
No 7
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.87 E-value=50 Score=25.66 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=14.7
Q ss_pred cccccCCCcEEEEEEEEE
Q 013030 251 ELRNAKNGQFVKISGVVT 268 (451)
Q Consensus 251 ~Lr~akdGQ~VKItG~Vt 268 (451)
+...+++|.||||.|.+.
T Consensus 73 ~~~~i~~g~yVrV~G~lk 90 (128)
T d2pi2a1 73 ENTVVPPETYVKVAGHLR 90 (128)
T ss_dssp -CCCCCTTCEEEEEEEEE
T ss_pred ccccccCCCEEEEEEEEE
Confidence 345788999999999976
No 8
>d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]}
Probab=13.67 E-value=27 Score=27.99 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.0
Q ss_pred EeeeeeeeCCeEEEEEEE
Q 013030 385 LKEGYIKEGSTVSVMGVV 402 (451)
Q Consensus 385 lkEGyIkEGstVSVmGvv 402 (451)
++||.|++||+|-.+|..
T Consensus 116 ~~~~~~~~Gd~ill~gfG 133 (148)
T d1u0ma2 116 FDEGGVEEGARGLLAGFG 133 (148)
T ss_dssp HHSCCCCSSCCCEEEEEE
T ss_pred HHcCCCCCCCEEEEEEEc
Confidence 468999999999999854
No 9
>d1ogya1 b.52.2.2 (A:682-801) Periplasmic nitrate reductase alpha chain, NapA {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.97 E-value=41 Score=25.69 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=20.3
Q ss_pred cccCCCcEEEEE---EEEEecccccccCcCCC--CceeEE
Q 013030 253 RNAKNGQFVKIS---GVVTCGNVPLESSFQKV--PRCIYT 287 (451)
Q Consensus 253 r~akdGQ~VKIt---G~VtCG~vPLeSsfqKv--~RCVYt 287 (451)
..++|||.|+|+ |.|.+ -+.+.+..+ +-|||.
T Consensus 49 ~Gi~dGd~V~v~s~~G~i~~---~~~v~~~~~v~~G~v~~ 85 (120)
T d1ogya1 49 RGLNRGSEVRVISRRGEIRT---RLETRGRNRMPRGVVFV 85 (120)
T ss_dssp TTCCTTCEEEEECSSCEEEE---EEESSSSSBCCTTEEEE
T ss_pred hCCCCCCEEEEECCCCcEEE---EEEeeccCCCCCCEEEE
Confidence 669999999999 65442 233433322 347776
No 10
>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]}
Probab=12.51 E-value=70 Score=22.70 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=19.8
Q ss_pred eeeeeCCeEEEEEEEEecCceeEEeCCC
Q 013030 388 GYIKEGSTVSVMGVVQRNDNVLMIVPPP 415 (451)
Q Consensus 388 GyIkEGstVSVmGvvqr~~~~lmIvpP~ 415 (451)
.|++||+.+.| +-|++..+-|.+|.
T Consensus 39 ~~L~eg~~~~v---~~~~~~~i~i~lPT 63 (63)
T d1ueba2 39 EFFKEGMTALG---DMYEGQPIKVTPPT 63 (63)
T ss_dssp GGCCTTCEEEE---EEETTEEEEEECCS
T ss_pred ccccCCCEEEE---EEECCEEEEEECCC
Confidence 48999998766 45788888888873
Done!