BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013031
(451 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28G87|LARP7_XENTR La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1
Length = 593
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 96/190 (50%), Gaps = 22/190 (11%)
Query: 180 KDKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVAS 239
KD+++KK + L + + QV+++F D+NL L I K +GY+ IS +AS
Sbjct: 23 KDREKKKRSRVKQL----LADIAKQVDFWFGDVNLHKDRFLREQIEKTRDGYIDISLLAS 78
Query: 240 FKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPED 299
F K+K I + +A ++ SS + ++ G KI+R+ PL E +++ SR V E LP++
Sbjct: 79 FNKMKKITTDSKLIARAVKNSSVVEINLSGTKIRRRFPLGEKP-QDVDSRTVYVELLPKN 137
Query: 300 HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVEL 359
H + ++F G V + +P+ G G AF+E+E+ E
Sbjct: 138 VTHSWIERVFGKYGMV--VYVSIPRYKSTGDPKG---------------FAFIEFETQEQ 180
Query: 360 AEKAIAELND 369
A KAI LN+
Sbjct: 181 AAKAIEVLNN 190
>sp|Q5XI01|LARP7_RAT La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2
Length = 571
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 18/169 (10%)
Query: 201 VLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS 260
+ QV+++F D NL L I K +GYV IS + SF K+K + + +A L+ S
Sbjct: 33 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS 92
Query: 261 SKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRT 320
S + + +G +I+R+ PL E +E + R V E LP++ H + ++F G+V +
Sbjct: 93 SVVELDLEGTRIRRKKPLGERPKDE-EERTVYVELLPKNVTHSWIERVFGKCGNV--VYI 149
Query: 321 CLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369
+P G G AFVE+E+ E A KAI LN+
Sbjct: 150 SIPHYKSTGDPKG---------------FAFVEFETKEQAAKAIEFLNN 183
>sp|Q05CL8|LARP7_MOUSE La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2
Length = 570
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 18/169 (10%)
Query: 201 VLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS 260
+ QV+++F D NL L I K +GYV IS + SF K+K + + +A L+ S
Sbjct: 32 IAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS 91
Query: 261 SKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRT 320
S + + +G +I+R+ PL E +E + R V E LP++ H + ++F G+V +
Sbjct: 92 SVVELDLEGTRIRRKKPLGERPKDE-EERTVYVELLPKNVTHSWIERVFGKCGNV--VYI 148
Query: 321 CLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369
+P G G AFVE+E+ E A KAI LN+
Sbjct: 149 SIPHYKSTGDPKG---------------FAFVEFETKEQAAKAIEFLNN 182
>sp|Q7ZWE3|LARP7_DANRE La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1
Length = 555
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 99/191 (51%), Gaps = 20/191 (10%)
Query: 181 DKKEKKDHQHGGLN--DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVA 238
D EKKD++ + + + V QVE++F D+NL + I + +GY+ I+ +
Sbjct: 24 DLSEKKDNEKKKRSRVKQLLSDVKKQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLT 83
Query: 239 SFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPE 298
+F ++K + + +A L+ S+ + V+++G +I+R+ PL E+ +++ SR V E LP+
Sbjct: 84 TFNRMKNLTADVKLIARALKNSTIVEVNDEGTRIRRKEPLGETP-KDVDSRTVYVELLPK 142
Query: 299 DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358
H L ++FS G V + +P+ S G AFVE+E+ E
Sbjct: 143 TVTHIWLERVFSKCGHV--VYISIPRYKSTRHSKG---------------FAFVEFETQE 185
Query: 359 LAEKAIAELND 369
A+KA+ LN+
Sbjct: 186 QAQKAVEMLNN 196
>sp|Q4R627|LARP7_MACFA La-related protein 7 OS=Macaca fascicularis GN=LARP7 PE=2 SV=1
Length = 581
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 18/169 (10%)
Query: 201 VLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS 260
+ QV+++F D NL L I K +GYV IS + SF K+K + + +A LR S
Sbjct: 38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSS 97
Query: 261 SKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRT 320
+ + + +G +I+R+ PL E +E R V E LP++ H + ++F G+V +
Sbjct: 98 AVVELDLEGTRIRRKKPLGERPKDE-DERTVYVELLPKNVNHSWIERVFGKCGNV--VYI 154
Query: 321 CLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369
+P G G AFVE+E+ E A KAI LN+
Sbjct: 155 SIPHYKSTGDPKG---------------FAFVEFETKEQAAKAIEFLNN 188
>sp|Q4G0J3|LARP7_HUMAN La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1 SV=1
Length = 582
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 18/169 (10%)
Query: 201 VLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS 260
+ QV+++F D NL L I K +GYV IS + SF K+K + + +A LR S
Sbjct: 38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSS 97
Query: 261 SKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRT 320
+ + + +G +I+R+ PL E +E R V E LP++ H + ++F G+V +
Sbjct: 98 AVVELDLEGTRIRRKKPLGERPKDE-DERTVYVELLPKNVNHSWIERVFGKCGNV--VYI 154
Query: 321 CLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369
+P G G AFVE+E+ E A KAI LN+
Sbjct: 155 SIPHYKSTGDPKG---------------FAFVEFETKEQAAKAIEFLNN 188
>sp|Q9BRS8|LARP6_HUMAN La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1 SV=1
Length = 491
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 99/203 (48%), Gaps = 20/203 (9%)
Query: 178 GVKDKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTV 237
G ++++E + + ++E I+K+++Q+E+YFSD NL L++ + ++ GYV + +
Sbjct: 73 GGENEREDLEQEWKPPDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLL 132
Query: 238 ASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENL- 296
SFKK+K + A L+ S L ++ED +K++R P+ E L S++++ +L
Sbjct: 133 TSFKKVKHLTRDWRTTAHALKYSVVLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLY 192
Query: 297 ----------------PEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSE 340
++ ++L+K+F G + ++R P G R S
Sbjct: 193 LSPKLWALATPQKNGRVQEKVMEHLLKLFGTFGVISSVRILKP---GRELPPDIRRISSR 249
Query: 341 GMLFSNKLHAFVEYESVELAEKA 363
+ A VE+E VE A KA
Sbjct: 250 YSQVGTQECAIVEFEEVEAAIKA 272
>sp|Q8BN59|LARP6_MOUSE La-related protein 6 OS=Mus musculus GN=Larp6 PE=1 SV=1
Length = 492
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 91/187 (48%), Gaps = 20/187 (10%)
Query: 194 NDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHL 253
++E I+K+++Q+E+YFSD NL L++ + ++ GYV + + SFKK+K +
Sbjct: 89 DEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTT 148
Query: 254 ASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENL----------------- 296
A L+ S L ++ED +K++R P+ E L S++++ +L
Sbjct: 149 AHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLHLSPKLWALATPQKNGR 208
Query: 297 PEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356
++ ++L+K+F G + ++R P G R S + A VE+E
Sbjct: 209 VQEKVMEHLLKLFGTFGVISSVRILKP---GRELPPDIRRISSRYSQVGTQECAIVEFEE 265
Query: 357 VELAEKA 363
V+ A KA
Sbjct: 266 VDAAIKA 272
>sp|P33399|LHP1_YEAST La protein homolog OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=LHP1 PE=1 SV=2
Length = 275
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 20/139 (14%)
Query: 196 ESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLAS 255
E + + L QVE+YFS+ N D +R + +G+VPIST+A+F ++K +
Sbjct: 28 EVLDRCLKQVEFYFSEFNFPY-DRFLRTTAEKNDGWVPISTIATFNRMKK-YRPVDKVIE 85
Query: 256 VLRKSSKLVVSEDGKKIKRQNPLTESDLE-------ELQSRIVVAENLP-ED-------H 300
LR S L VS DG+ +KR+ PL DL E R + N P ED
Sbjct: 86 ALRSSEILEVSADGENVKRRVPL---DLTAARNARIEQNQRTLAVMNFPHEDVEASQIPE 142
Query: 301 CHQNLMKIFSAVGSVKTIR 319
+NL F +G + +R
Sbjct: 143 LQENLEAFFKKLGEINQVR 161
>sp|P87058|LAH1_SCHPO La protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=sla1 PE=1 SV=1
Length = 298
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 201 VLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS 260
VL QVE+YFSD NL D + + +G+VPI T+A+FK+++ + + LRKS
Sbjct: 67 VLKQVEFYFSDTNLPH-DKFLWTTSQKNDGWVPIQTIANFKRMRR-FQPLEAIVNALRKS 124
Query: 261 SKLV-VSEDGKKIKRQNPLTESDLEELQSRIVVAENLPE--DHCHQNLMKIFSA-VGSVK 316
+L+ V E G+K++R PL D + + R V + + D L K F G +
Sbjct: 125 PELLEVDEAGEKVRRMIPLVRVDNKSVMERSVYCKGFGDEKDDTQIALEKFFEENAGPIS 184
Query: 317 TIR 319
+R
Sbjct: 185 AVR 187
>sp|P40796|LA_DROME La protein homolog OS=Drosophila melanogaster GN=La PE=1 SV=2
Length = 390
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 7/113 (6%)
Query: 201 VLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS 260
++ QVEYYF D NL L I K+ +G+VP+S + +FK++ ++ + S + + L KS
Sbjct: 54 IIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKS 113
Query: 261 SK-LV-VSEDGKKIKR--QNPL---TESDLEELQSRIVVAENLPEDHCHQNLM 306
+ LV +SED ++R + P+ E +E+Q R A+ P D L+
Sbjct: 114 EEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFPLDSQISELL 166
>sp|Q9VAW5|LARP_DROME La-related protein OS=Drosophila melanogaster GN=larp PE=1 SV=5
Length = 1673
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 193 LNDESIQKVLN-QVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHS 251
L+ SI++ + QVEYYFS NL T D +R + DPEGY+P++ +ASF ++ A+ + +
Sbjct: 724 LDANSIKEAIKKQVEYYFSVDNL-TGDFFLRRKM-DPEGYIPVTLIASFHRVLALTTDVA 781
Query: 252 HLASVLRKSSKLVVSEDGKKIKRQNPLT 279
+ + +++S KL + E K + P T
Sbjct: 782 VIVNAIKESDKLELFEGYKVRTKTTPTT 809
>sp|Q26457|LA_AEDAL La protein homolog OS=Aedes albopictus PE=1 SV=1
Length = 383
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 10/127 (7%)
Query: 201 VLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS 260
+ Q+EYYF D NLA L I KD EG+VP+ + +FK++K++ + + KS
Sbjct: 47 TIRQLEYYFGDANLARDKFLQEQISKD-EGWVPVDVLLTFKRLKSLSEDKKVIVDAIEKS 105
Query: 261 SK--LVVSEDGKKIKR--QNPLTESDLE---ELQSRIVVAENL-PEDHCHQN-LMKIFSA 311
+ + VSED +K++R + PL E + E E+ R V + PE+ + L++ F
Sbjct: 106 DEGLIEVSEDREKLRRHPERPLPEQNEETRKEIYGRTVYVKGFAPEEGTQMSELLEFFEP 165
Query: 312 VGSVKTI 318
+ I
Sbjct: 166 FEKITNI 172
>sp|P32067|LA_MOUSE Lupus La protein homolog OS=Mus musculus GN=Ssb PE=2 SV=1
Length = 415
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 10/138 (7%)
Query: 200 KVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRK 259
K+ +Q+EYYF D NL D ++ +K EG+VP+ T+ F ++ + + + + L K
Sbjct: 16 KICHQIEYYFGDFNLPR-DKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSK 74
Query: 260 S-SKLV-VSEDGKKIKR--QNPLTESDLE---ELQSRIVVAENLPEDHCHQNLMKIFSAV 312
S +KL+ VS D KI+R PL E E ++++R V + P D ++ +
Sbjct: 75 SKAKLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLDDK 134
Query: 313 GSVKTI--RTCLPQTSGG 328
G + I R L +T G
Sbjct: 135 GQILNIQMRRTLHKTFKG 152
>sp|P38656|LA_RAT Lupus La protein homolog OS=Rattus norvegicus GN=Ssb PE=2 SV=1
Length = 415
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 10/138 (7%)
Query: 200 KVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRK 259
K+ +Q+EYYF D NL D ++ +K EG+VP+ T+ F ++ + + + + L K
Sbjct: 16 KICHQIEYYFGDFNLPR-DKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSK 74
Query: 260 SSK--LVVSEDGKKIKR--QNPLTESDLE---ELQSRIVVAENLPEDHCHQNLMKIFSAV 312
S + VS D KI+R PL E E ++++R V + P D ++ +
Sbjct: 75 SKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLDDK 134
Query: 313 GSVKTI--RTCLPQTSGG 328
G + I R L +T G
Sbjct: 135 GQILNIQMRRTLHKTFKG 152
>sp|P05455|LA_HUMAN Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2
Length = 408
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Query: 200 KVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRK 259
K+ +Q+EYYF D NL D ++ +K EG+VP+ + F ++ + + + + L K
Sbjct: 16 KICHQIEYYFGDFNLP-RDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSK 74
Query: 260 SSK--LVVSEDGKKIKR--QNPLTESDLE---ELQSRIVVAENLPEDHCHQNLMKIFSAV 312
S + +SED KI+R PL E E ++++R V + P D ++ +
Sbjct: 75 SKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDK 134
Query: 313 GSVKTI 318
G V I
Sbjct: 135 GQVLNI 140
>sp|P10881|LA_BOVIN Lupus La protein homolog OS=Bos taurus GN=SSB PE=2 SV=2
Length = 404
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Query: 200 KVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRK 259
K+ +Q+EYYF D NL D ++ +K EG+VP+ + F ++ + + + + L K
Sbjct: 16 KICHQIEYYFGDFNLP-RDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSK 74
Query: 260 SSK--LVVSEDGKKIKR--QNPLTESDLE---ELQSRIVVAENLPEDHCHQNLMKIFSAV 312
S + +SED KI+R PL E E ++++R V + P D ++ +
Sbjct: 75 SKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDAALDDIKEWLEDK 134
Query: 313 GSVKTI 318
G V I
Sbjct: 135 GQVLNI 140
>sp|P28048|LAA_XENLA Lupus La protein homolog A OS=Xenopus laevis GN=ssb-a PE=2 SV=1
Length = 428
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 196 ESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLAS 255
+S K+ Q+EYYF D NL L + IL D +G+VP+ T+ F ++ + + + +
Sbjct: 12 DSDTKICEQIEYYFGDHNLPRDKFLKQQILLD-DGWVPLETMIKFNRLSKLTTDFNTILQ 70
Query: 256 VLRKSSK--LVVSEDGKKIKR 274
L+KS L ++E+ KI+R
Sbjct: 71 ALKKSKTELLEINEEKCKIRR 91
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,918,543
Number of Sequences: 539616
Number of extensions: 8416288
Number of successful extensions: 176410
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1959
Number of HSP's successfully gapped in prelim test: 1526
Number of HSP's that attempted gapping in prelim test: 67076
Number of HSP's gapped (non-prelim): 51042
length of query: 451
length of database: 191,569,459
effective HSP length: 121
effective length of query: 330
effective length of database: 126,275,923
effective search space: 41671054590
effective search space used: 41671054590
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)