Query 013031
Match_columns 451
No_of_seqs 319 out of 2052
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:50:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1855 Predicted RNA-binding 100.0 1.4E-51 2.9E-56 417.1 21.8 270 149-422 84-364 (484)
2 cd08032 LARP_7 La RNA-binding 99.9 6.8E-28 1.5E-32 198.4 5.7 80 195-274 3-82 (82)
3 cd08033 LARP_6 La RNA-binding 99.9 1E-27 2.2E-32 195.3 4.4 76 199-274 2-77 (77)
4 cd08035 LARP_4 La RNA-binding 99.9 4E-27 8.7E-32 190.2 4.4 75 198-274 1-75 (75)
5 cd08036 LARP_5 La RNA-binding 99.9 7.8E-27 1.7E-31 187.6 4.5 74 199-274 2-75 (75)
6 cd08029 LA_like_fungal La-moti 99.9 1.1E-26 2.5E-31 188.9 4.5 75 199-274 2-76 (76)
7 smart00715 LA Domain in the RN 99.9 1.4E-26 3.1E-31 190.2 4.7 80 195-275 1-80 (80)
8 cd08028 LARP_3 La RNA-binding 99.9 2.3E-26 5E-31 189.6 5.1 79 195-274 2-82 (82)
9 cd08030 LA_like_plant La-motif 99.9 4.1E-26 8.8E-31 190.8 4.8 77 198-274 2-90 (90)
10 cd08031 LARP_4_5_like La RNA-b 99.9 1E-25 2.2E-30 182.7 4.3 74 199-274 2-75 (75)
11 cd08037 LARP_1 La RNA-binding 99.9 4.9E-25 1.1E-29 177.5 4.3 72 199-274 2-73 (73)
12 cd08038 LARP_2 La RNA-binding 99.9 7.7E-25 1.7E-29 176.4 4.8 72 199-274 2-73 (73)
13 cd08034 LARP_1_2 La RNA-bindin 99.9 1.3E-24 2.7E-29 175.5 4.4 72 199-274 2-73 (73)
14 cd07323 LAM LA motif RNA-bindi 99.9 2.1E-24 4.6E-29 175.4 4.8 74 199-274 2-75 (75)
15 KOG2591 c-Mpl binding protein, 99.9 1.4E-23 3E-28 218.8 10.1 156 189-380 88-247 (684)
16 KOG4213 RNA-binding protein La 99.9 8.2E-23 1.8E-27 188.2 7.2 155 194-368 10-171 (205)
17 PF05383 La: La domain; Inter 99.8 3.9E-22 8.4E-27 156.0 2.1 60 201-260 1-61 (61)
18 PLN03134 glycine-rich RNA-bind 99.6 1.6E-15 3.6E-20 137.5 11.5 86 287-389 33-118 (144)
19 TIGR01659 sex-lethal sex-letha 99.5 5.5E-14 1.2E-18 144.3 14.7 116 249-385 158-275 (346)
20 KOG0121 Nuclear cap-binding pr 99.5 9.6E-15 2.1E-19 129.1 7.6 106 285-407 33-138 (153)
21 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 3E-14 6.4E-19 144.0 10.3 82 288-386 269-350 (352)
22 COG5193 LHP1 La protein, small 99.5 2.9E-15 6.2E-20 152.6 2.5 164 185-365 44-244 (438)
23 PF00076 RRM_1: RNA recognitio 99.5 1.3E-13 2.7E-18 106.7 7.1 70 291-378 1-70 (70)
24 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 2.1E-13 4.6E-18 137.8 9.5 80 288-384 3-82 (352)
25 TIGR01659 sex-lethal sex-letha 99.4 3.1E-13 6.7E-18 138.8 10.3 80 287-383 106-185 (346)
26 TIGR01645 half-pint poly-U bin 99.4 1.9E-12 4.2E-17 140.9 15.0 120 249-385 158-284 (612)
27 TIGR01628 PABP-1234 polyadenyl 99.4 1.2E-12 2.7E-17 141.3 11.1 82 287-386 284-365 (562)
28 PLN03120 nucleic acid binding 99.4 1.8E-12 3.8E-17 127.6 10.1 75 288-383 4-78 (260)
29 TIGR01645 half-pint poly-U bin 99.4 1.2E-12 2.7E-17 142.3 8.9 134 287-444 106-239 (612)
30 TIGR01628 PABP-1234 polyadenyl 99.4 1.1E-12 2.4E-17 141.6 8.1 84 286-387 176-263 (562)
31 TIGR01648 hnRNP-R-Q heterogene 99.3 8.5E-12 1.9E-16 135.4 13.7 76 288-388 233-310 (578)
32 KOG0107 Alternative splicing f 99.3 3.6E-12 7.9E-17 118.0 8.6 78 288-387 10-87 (195)
33 TIGR01642 U2AF_lg U2 snRNP aux 99.3 1.2E-11 2.6E-16 131.4 13.0 80 288-384 295-374 (509)
34 TIGR01622 SF-CC1 splicing fact 99.3 6.1E-12 1.3E-16 132.0 10.1 81 285-383 86-166 (457)
35 PF14259 RRM_6: RNA recognitio 99.3 6.1E-12 1.3E-16 98.5 7.0 69 291-377 1-69 (70)
36 KOG0122 Translation initiation 99.3 6.4E-12 1.4E-16 121.5 8.4 81 287-384 188-268 (270)
37 KOG0113 U1 small nuclear ribon 99.3 1.6E-11 3.5E-16 121.5 11.0 84 287-387 100-183 (335)
38 TIGR01622 SF-CC1 splicing fact 99.3 2.6E-11 5.7E-16 127.2 13.0 80 288-384 186-265 (457)
39 KOG0114 Predicted RNA-binding 99.3 1.4E-11 3.1E-16 105.6 8.6 78 287-384 17-94 (124)
40 KOG0130 RNA-binding protein RB 99.3 1.5E-11 3.3E-16 109.8 8.4 86 285-387 69-154 (170)
41 smart00362 RRM_2 RNA recogniti 99.3 2.4E-11 5.2E-16 92.1 8.3 71 290-379 1-71 (72)
42 KOG0144 RNA-binding protein CU 99.2 5.8E-12 1.3E-16 129.6 5.8 146 211-390 63-211 (510)
43 COG0724 RNA-binding proteins ( 99.2 8.4E-11 1.8E-15 109.6 12.2 79 288-383 115-193 (306)
44 KOG0108 mRNA cleavage and poly 99.2 3.5E-11 7.6E-16 126.5 9.6 83 289-388 19-101 (435)
45 KOG0125 Ataxin 2-binding prote 99.2 1.9E-11 4.2E-16 122.3 7.2 81 287-386 95-175 (376)
46 PLN03213 repressor of silencin 99.2 4.4E-11 9.5E-16 124.7 9.4 77 287-384 9-87 (759)
47 PLN03121 nucleic acid binding 99.2 6.3E-11 1.4E-15 115.3 9.9 76 287-383 4-79 (243)
48 smart00360 RRM RNA recognition 99.2 8.6E-11 1.9E-15 88.6 8.1 70 293-379 1-70 (71)
49 TIGR01648 hnRNP-R-Q heterogene 99.2 9.5E-11 2.1E-15 127.3 11.4 76 287-380 57-133 (578)
50 KOG0111 Cyclophilin-type pepti 99.2 1.7E-11 3.7E-16 117.1 4.8 86 286-388 8-93 (298)
51 KOG0131 Splicing factor 3b, su 99.2 4.2E-11 9.1E-16 111.6 7.2 103 287-406 8-110 (203)
52 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 7.1E-11 1.5E-15 126.0 9.6 75 288-385 2-78 (481)
53 KOG0149 Predicted RNA-binding 99.2 5.4E-11 1.2E-15 114.6 7.0 79 287-383 11-89 (247)
54 KOG0117 Heterogeneous nuclear 99.2 2.3E-10 5E-15 118.3 11.9 80 286-382 81-161 (506)
55 KOG0117 Heterogeneous nuclear 99.1 1.3E-10 2.9E-15 120.1 10.0 167 194-385 134-331 (506)
56 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 1.5E-10 3.2E-15 123.6 10.0 77 287-385 274-351 (481)
57 cd00590 RRM RRM (RNA recogniti 99.1 3.5E-10 7.6E-15 86.1 9.0 73 290-380 1-73 (74)
58 KOG0127 Nucleolar protein fibr 99.1 1.8E-10 3.9E-15 121.5 9.7 157 203-387 20-198 (678)
59 KOG0126 Predicted RNA-binding 99.1 9.7E-12 2.1E-16 115.9 -0.4 83 286-385 33-115 (219)
60 KOG0148 Apoptosis-promoting RN 99.1 1.1E-10 2.3E-15 114.6 6.2 80 290-386 64-143 (321)
61 KOG0105 Alternative splicing f 99.1 4.2E-10 9.2E-15 105.3 8.4 80 287-386 5-84 (241)
62 KOG4207 Predicted splicing fac 99.1 2.9E-10 6.4E-15 107.9 7.2 79 289-384 14-92 (256)
63 KOG0148 Apoptosis-promoting RN 99.1 3.8E-10 8.3E-15 110.7 7.9 70 286-378 162-231 (321)
64 PF13893 RRM_5: RNA recognitio 99.0 6E-10 1.3E-14 84.3 7.3 56 305-382 1-56 (56)
65 KOG0145 RNA-binding protein EL 99.0 3.4E-10 7.4E-15 110.6 7.4 119 249-388 92-212 (360)
66 smart00361 RRM_1 RNA recogniti 99.0 1.3E-09 2.9E-14 86.6 6.9 63 302-379 2-69 (70)
67 TIGR01642 U2AF_lg U2 snRNP aux 98.9 1.3E-09 2.8E-14 115.9 7.8 75 284-382 171-257 (509)
68 KOG0144 RNA-binding protein CU 98.9 1.8E-09 3.9E-14 111.5 8.3 86 282-384 28-116 (510)
69 KOG1924 RhoA GTPase effector D 98.9 2.6E-09 5.7E-14 116.4 8.5 13 359-371 803-815 (1102)
70 KOG1924 RhoA GTPase effector D 98.9 4.3E-09 9.3E-14 114.8 9.6 13 55-67 542-554 (1102)
71 KOG4212 RNA-binding protein hn 98.9 5.3E-09 1.2E-13 108.1 8.4 79 287-383 43-122 (608)
72 KOG0132 RNA polymerase II C-te 98.9 3.8E-09 8.3E-14 115.2 7.7 82 284-388 417-498 (894)
73 KOG0145 RNA-binding protein EL 98.9 4.8E-09 1E-13 102.6 7.7 81 288-385 41-121 (360)
74 KOG0127 Nucleolar protein fibr 98.9 4.5E-09 9.7E-14 111.1 7.9 81 288-385 292-378 (678)
75 KOG0123 Polyadenylate-binding 98.8 9.9E-09 2.1E-13 106.5 9.9 111 249-388 46-156 (369)
76 KOG0147 Transcriptional coacti 98.8 8.2E-09 1.8E-13 109.3 7.8 80 291-387 281-360 (549)
77 KOG0124 Polypyrimidine tract-b 98.8 3.8E-09 8.1E-14 107.2 5.0 77 288-381 113-189 (544)
78 KOG2590 RNA-binding protein LA 98.8 6.4E-09 1.4E-13 109.5 5.0 70 196-274 299-368 (448)
79 KOG0153 Predicted RNA-binding 98.7 2.6E-08 5.5E-13 100.8 8.3 79 284-386 224-302 (377)
80 COG5193 LHP1 La protein, small 98.7 3.6E-09 7.9E-14 108.5 1.4 61 198-260 271-331 (438)
81 KOG4206 Spliceosomal protein s 98.7 5.5E-08 1.2E-12 93.5 8.5 79 288-386 9-91 (221)
82 KOG0131 Splicing factor 3b, su 98.7 5E-08 1.1E-12 91.3 7.3 84 288-388 96-180 (203)
83 KOG0415 Predicted peptidyl pro 98.6 3.7E-08 8E-13 99.9 6.3 80 287-383 238-317 (479)
84 KOG4205 RNA-binding protein mu 98.6 4.2E-08 9.2E-13 99.5 3.8 151 204-388 22-179 (311)
85 KOG0123 Polyadenylate-binding 98.5 1.4E-07 3.1E-12 97.9 7.2 141 223-386 107-247 (369)
86 KOG4208 Nucleolar RNA-binding 98.5 2.6E-07 5.5E-12 88.0 7.8 81 288-385 49-130 (214)
87 KOG0109 RNA-binding protein LA 98.5 1E-07 2.2E-12 94.7 5.2 71 290-385 4-74 (346)
88 KOG4212 RNA-binding protein hn 98.5 1.9E-07 4.2E-12 96.8 7.0 75 286-382 534-608 (608)
89 KOG0109 RNA-binding protein LA 98.5 1.3E-07 2.7E-12 94.0 5.2 74 287-385 77-150 (346)
90 KOG0110 RNA-binding protein (R 98.5 4E-07 8.7E-12 99.1 8.8 80 290-383 517-596 (725)
91 KOG0124 Polypyrimidine tract-b 98.5 3.9E-07 8.4E-12 92.9 7.8 111 253-380 168-285 (544)
92 KOG0146 RNA-binding protein ET 98.5 1.9E-07 4.2E-12 91.9 5.3 85 284-385 281-365 (371)
93 KOG0116 RasGAP SH3 binding pro 98.4 6.9E-07 1.5E-11 94.0 8.5 75 288-380 288-362 (419)
94 KOG0146 RNA-binding protein ET 98.4 5.2E-07 1.1E-11 88.9 5.8 84 286-387 17-103 (371)
95 KOG4209 Splicing factor RNPS1, 98.3 1.1E-06 2.3E-11 86.1 7.4 86 283-386 96-181 (231)
96 KOG0110 RNA-binding protein (R 98.3 2.3E-06 4.9E-11 93.4 9.0 80 288-384 613-692 (725)
97 KOG0106 Alternative splicing f 98.3 7.9E-07 1.7E-11 85.9 4.6 68 290-382 3-70 (216)
98 KOG4660 Protein Mei2, essentia 98.3 5.9E-07 1.3E-11 95.6 4.1 72 285-378 72-143 (549)
99 KOG0533 RRM motif-containing p 98.2 4E-06 8.7E-11 82.5 8.9 80 287-384 82-161 (243)
100 KOG4661 Hsp27-ERE-TATA-binding 98.2 6.7E-06 1.4E-10 87.8 10.3 80 288-384 405-484 (940)
101 KOG4454 RNA binding protein (R 98.1 1.1E-06 2.3E-11 84.6 2.6 79 288-385 9-87 (267)
102 KOG1548 Transcription elongati 97.9 2.3E-05 5E-10 79.7 7.9 90 284-383 130-219 (382)
103 KOG4205 RNA-binding protein mu 97.9 1.3E-05 2.8E-10 81.7 5.2 63 287-366 5-67 (311)
104 KOG1457 RNA binding protein (c 97.8 0.00012 2.5E-09 71.1 9.5 81 288-384 34-117 (284)
105 KOG0226 RNA-binding proteins [ 97.8 4.1E-05 8.8E-10 75.3 6.4 77 287-380 189-265 (290)
106 PF08777 RRM_3: RNA binding mo 97.7 9E-05 2E-09 64.1 7.2 72 289-383 2-78 (105)
107 PF11608 Limkain-b1: Limkain b 97.7 0.00018 3.8E-09 60.1 8.0 68 289-383 3-75 (90)
108 KOG4206 Spliceosomal protein s 97.7 8.3E-05 1.8E-09 71.9 6.9 163 198-382 23-219 (221)
109 KOG0147 Transcriptional coacti 97.6 3.2E-05 6.9E-10 82.6 2.3 82 284-383 175-256 (549)
110 KOG0151 Predicted splicing reg 97.6 8.7E-05 1.9E-09 81.3 5.5 101 268-382 144-254 (877)
111 KOG1190 Polypyrimidine tract-b 97.5 0.00067 1.5E-08 70.6 10.0 75 288-384 297-372 (492)
112 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00041 8.9E-09 52.8 5.5 52 289-364 2-53 (53)
113 COG5175 MOT2 Transcriptional r 97.4 0.00045 9.7E-09 70.4 7.3 83 285-381 111-199 (480)
114 KOG1457 RNA binding protein (c 97.3 0.0002 4.3E-09 69.5 4.3 63 289-372 211-273 (284)
115 PF04059 RRM_2: RNA recognitio 97.3 0.0012 2.5E-08 56.6 8.4 67 289-372 2-70 (97)
116 KOG4211 Splicing factor hnRNP- 97.3 0.00076 1.6E-08 71.6 8.7 59 288-366 10-68 (510)
117 KOG0106 Alternative splicing f 97.3 0.00013 2.9E-09 70.6 2.8 71 287-382 98-168 (216)
118 KOG4211 Splicing factor hnRNP- 97.3 0.00071 1.5E-08 71.8 8.0 134 207-379 29-176 (510)
119 KOG1995 Conserved Zn-finger pr 97.2 0.0003 6.4E-09 72.1 4.4 91 287-386 65-155 (351)
120 KOG4307 RNA binding protein RB 97.2 0.00084 1.8E-08 73.7 7.1 75 289-381 868-943 (944)
121 KOG1548 Transcription elongati 97.1 0.0021 4.6E-08 65.8 8.6 78 287-385 264-352 (382)
122 KOG2314 Translation initiation 97.1 0.0012 2.5E-08 71.2 7.0 78 288-383 58-142 (698)
123 KOG0120 Splicing factor U2AF, 96.8 0.00085 1.9E-08 72.1 3.7 82 288-386 289-370 (500)
124 KOG4210 Nuclear localization s 96.8 0.0019 4.2E-08 65.2 5.7 81 288-386 184-265 (285)
125 KOG0120 Splicing factor U2AF, 96.5 0.0058 1.3E-07 65.9 7.3 66 303-382 424-489 (500)
126 KOG0105 Alternative splicing f 96.2 0.037 8.1E-07 52.7 9.9 67 289-379 116-182 (241)
127 KOG0128 RNA-binding protein SA 96.2 0.0036 7.8E-08 70.2 3.4 78 288-383 736-813 (881)
128 KOG0129 Predicted RNA-binding 96.0 0.023 5E-07 61.0 8.2 68 286-368 257-327 (520)
129 KOG2202 U2 snRNP splicing fact 95.9 0.0034 7.4E-08 62.0 1.7 63 302-382 82-145 (260)
130 KOG3152 TBP-binding protein, a 95.8 0.0046 1E-07 61.1 2.0 83 288-375 74-156 (278)
131 KOG1190 Polypyrimidine tract-b 95.7 0.0077 1.7E-07 63.0 3.1 74 287-383 27-102 (492)
132 PF08952 DUF1866: Domain of un 95.7 0.024 5.1E-07 52.0 5.8 61 302-388 50-110 (146)
133 KOG1996 mRNA splicing factor [ 95.7 0.025 5.3E-07 57.2 6.4 66 302-383 300-365 (378)
134 PF05172 Nup35_RRM: Nup53/35/4 95.4 0.049 1.1E-06 46.9 6.7 76 287-374 5-80 (100)
135 KOG2068 MOT2 transcription fac 95.3 0.0066 1.4E-07 62.0 0.9 83 286-382 75-160 (327)
136 PF15023 DUF4523: Protein of u 95.2 0.081 1.8E-06 48.6 7.7 61 286-370 84-148 (166)
137 KOG1456 Heterogeneous nuclear 95.2 0.075 1.6E-06 55.3 8.2 74 288-383 287-361 (494)
138 KOG0129 Predicted RNA-binding 94.5 0.09 2E-06 56.6 6.9 63 287-366 369-432 (520)
139 PF09421 FRQ: Frequency clock 94.4 0.026 5.6E-07 64.8 2.9 52 225-276 472-524 (989)
140 KOG1365 RNA-binding protein Fu 94.3 0.12 2.5E-06 54.1 7.0 60 289-367 162-226 (508)
141 PF10309 DUF2414: Protein of u 94.3 0.18 4E-06 39.9 6.6 55 287-367 4-62 (62)
142 KOG0112 Large RNA-binding prot 93.7 0.08 1.7E-06 60.2 5.0 76 287-385 454-531 (975)
143 KOG1923 Rac1 GTPase effector F 93.4 0.24 5.3E-06 55.6 8.0 16 191-206 387-402 (830)
144 KOG4307 RNA binding protein RB 93.4 6.6 0.00014 44.3 18.6 80 288-385 434-514 (944)
145 KOG1456 Heterogeneous nuclear 93.4 0.23 5E-06 51.8 7.2 74 289-384 121-198 (494)
146 PF07145 PAM2: Ataxin-2 C-term 93.2 0.054 1.2E-06 32.7 1.4 16 36-51 2-17 (18)
147 KOG0112 Large RNA-binding prot 92.8 0.028 6.1E-07 63.7 -0.3 79 286-382 370-448 (975)
148 PF07576 BRAP2: BRCA1-associat 92.6 0.71 1.5E-05 40.5 8.2 66 290-374 15-81 (110)
149 KOG2416 Acinus (induces apopto 92.0 0.13 2.9E-06 56.2 3.5 73 287-383 443-520 (718)
150 KOG1365 RNA-binding protein Fu 91.8 0.19 4E-06 52.6 4.2 66 288-371 280-348 (508)
151 KOG0128 RNA-binding protein SA 91.7 0.013 2.8E-07 65.9 -4.6 64 288-368 667-730 (881)
152 KOG0115 RNA-binding protein p5 91.6 0.22 4.7E-06 49.6 4.2 68 289-374 32-99 (275)
153 KOG4574 RNA-binding protein (c 91.3 0.13 2.8E-06 58.3 2.6 70 291-383 301-372 (1007)
154 KOG4676 Splicing factor, argin 91.3 0.27 5.7E-06 51.6 4.7 81 289-384 8-88 (479)
155 KOG4849 mRNA cleavage factor I 91.2 0.25 5.5E-06 51.1 4.4 76 288-380 80-157 (498)
156 PF08675 RNA_bind: RNA binding 91.2 0.63 1.4E-05 39.2 5.9 64 290-383 11-74 (87)
157 KOG1923 Rac1 GTPase effector F 89.4 1.3 2.8E-05 50.1 8.2 8 292-299 532-539 (830)
158 PF03467 Smg4_UPF3: Smg-4/UPF3 88.4 0.54 1.2E-05 44.3 4.0 71 287-372 6-80 (176)
159 KOG2135 Proteins containing th 88.3 0.24 5.2E-06 53.0 1.7 77 286-386 370-447 (526)
160 KOG0804 Cytoplasmic Zn-finger 87.7 1.6 3.4E-05 46.8 7.1 69 288-375 74-143 (493)
161 KOG1819 FYVE finger-containing 87.1 0.28 6E-06 52.9 1.3 10 304-313 741-750 (990)
162 PF04847 Calcipressin: Calcipr 84.3 1.6 3.5E-05 41.6 4.8 60 301-383 8-69 (184)
163 KOG1819 FYVE finger-containing 83.1 1 2.3E-05 48.6 3.3 9 190-198 632-640 (990)
164 PRK00819 RNA 2'-phosphotransfe 82.1 2.6 5.7E-05 40.0 5.3 84 224-313 26-113 (179)
165 KOG2318 Uncharacterized conser 81.5 4.3 9.3E-05 44.8 7.2 91 287-381 173-302 (650)
166 PF01885 PTS_2-RNA: RNA 2'-pho 80.6 1.1 2.3E-05 42.8 2.1 52 225-276 26-82 (186)
167 KOG2278 RNA:NAD 2'-phosphotran 79.3 1.2 2.7E-05 42.2 2.0 40 223-262 26-65 (207)
168 KOG4849 mRNA cleavage factor I 79.3 18 0.00039 38.0 10.4 10 123-132 314-323 (498)
169 KOG2193 IGF-II mRNA-binding pr 75.9 2.5 5.5E-05 45.0 3.4 58 290-370 3-60 (584)
170 KOG4210 Nuclear localization s 75.5 2.4 5.1E-05 43.1 3.0 77 287-380 87-163 (285)
171 COG5178 PRP8 U5 snRNP spliceos 75.3 2.1 4.6E-05 50.4 2.9 15 249-263 222-236 (2365)
172 PF11767 SET_assoc: Histone ly 75.3 7.2 0.00016 31.2 5.1 50 299-374 11-60 (66)
173 KOG4676 Splicing factor, argin 74.5 0.69 1.5E-05 48.6 -1.1 63 284-368 148-210 (479)
174 KOG4660 Protein Mei2, essentia 73.7 5.1 0.00011 43.9 5.1 29 346-375 430-458 (549)
175 PF03880 DbpA: DbpA RNA bindin 72.2 19 0.0004 28.9 6.9 58 299-382 12-74 (74)
176 KOG4285 Mitotic phosphoprotein 71.7 12 0.00027 38.4 6.9 63 288-375 197-259 (350)
177 KOG2253 U1 snRNP complex, subu 70.0 3.1 6.7E-05 46.4 2.5 68 288-381 40-107 (668)
178 PF10567 Nab6_mRNP_bdg: RNA-re 64.5 16 0.00036 37.3 6.1 90 285-384 12-107 (309)
179 PF03276 Gag_spuma: Spumavirus 60.3 24 0.00052 38.9 6.9 11 105-115 256-266 (582)
180 PRK15319 AIDA autotransporter- 59.3 14 0.00031 45.9 5.5 9 234-242 1809-1817(2039)
181 KOG2891 Surface glycoprotein [ 58.5 4 8.7E-05 41.4 0.7 33 288-320 149-193 (445)
182 PTZ00315 2'-phosphotransferase 57.5 16 0.00036 40.7 5.2 53 224-276 398-456 (582)
183 KOG2675 Adenylate cyclase-asso 52.4 13 0.00028 40.0 3.2 15 204-218 335-349 (480)
184 KOG1925 Rac1 GTPase effector F 50.6 20 0.00044 39.3 4.4 11 289-299 520-530 (817)
185 COG0724 RNA-binding proteins ( 46.5 42 0.0009 30.8 5.4 36 286-321 223-258 (306)
186 PF03276 Gag_spuma: Spumavirus 45.5 82 0.0018 35.0 8.0 10 304-313 418-427 (582)
187 KOG1925 Rac1 GTPase effector F 44.1 28 0.00061 38.2 4.2 10 42-51 196-205 (817)
188 KOG0559 Dihydrolipoamide succi 39.1 1.2E+02 0.0026 32.3 7.7 18 253-270 294-311 (457)
189 KOG3423 Transcription initiati 36.5 99 0.0022 29.3 6.1 94 192-313 67-166 (176)
190 KOG2893 Zn finger protein [Gen 35.9 4.8E+02 0.01 26.4 13.2 8 177-184 253-260 (341)
191 PF03468 XS: XS domain; Inter 35.5 69 0.0015 28.3 4.7 49 290-358 10-67 (116)
192 PF00398 RrnaAD: Ribosomal RNA 33.9 21 0.00045 35.3 1.3 109 194-319 15-130 (262)
193 PF08544 GHMP_kinases_C: GHMP 33.4 1.6E+02 0.0034 23.1 6.2 45 302-368 36-80 (85)
194 KOG4483 Uncharacterized conser 31.6 1.2E+02 0.0025 32.7 6.2 54 289-365 392-445 (528)
195 PF00403 HMA: Heavy-metal-asso 31.1 2.2E+02 0.0048 21.1 7.2 32 290-321 1-32 (62)
196 PRK14548 50S ribosomal protein 29.1 1.1E+02 0.0023 25.7 4.6 52 296-367 28-81 (84)
197 KOG2590 RNA-binding protein LA 28.7 24 0.00051 38.3 0.8 62 198-261 100-164 (448)
198 PF02714 DUF221: Domain of unk 27.2 70 0.0015 32.2 3.8 31 350-382 1-31 (325)
199 COG2608 CopZ Copper chaperone 25.8 3.3E+02 0.0072 21.4 7.3 45 289-356 4-48 (71)
200 TIGR03636 L23_arch archaeal ri 25.3 1.5E+02 0.0033 24.4 4.7 56 292-367 17-74 (77)
201 PF08156 NOP5NT: NOP5NT (NUC12 24.5 31 0.00068 27.5 0.6 22 347-368 44-65 (67)
202 PF15513 DUF4651: Domain of un 24.2 88 0.0019 24.9 3.0 19 302-320 8-26 (62)
203 KOG2193 IGF-II mRNA-binding pr 24.0 11 0.00024 40.4 -2.7 82 285-386 77-158 (584)
204 PF03439 Spt5-NGN: Early trans 23.3 81 0.0018 25.9 2.8 23 347-369 44-66 (84)
205 KOG2675 Adenylate cyclase-asso 23.1 59 0.0013 35.2 2.4 8 313-320 370-377 (480)
206 KOG4019 Calcineurin-mediated s 22.8 85 0.0018 30.2 3.2 73 289-384 11-89 (193)
207 COG1859 KptA RNA:NAD 2'-phosph 22.2 56 0.0012 32.0 1.9 51 224-276 52-104 (211)
208 PF11823 DUF3343: Protein of u 22.1 1.4E+02 0.003 23.7 3.9 30 349-383 3-32 (73)
209 PRK14950 DNA polymerase III su 21.8 4.1E+02 0.0088 29.7 8.8 8 198-205 471-478 (585)
210 KOG4410 5-formyltetrahydrofola 21.6 1.9E+02 0.004 30.0 5.4 26 289-314 331-356 (396)
211 PRK11901 hypothetical protein; 21.0 1.3E+02 0.0028 31.4 4.3 59 289-369 246-306 (327)
212 KOG2589 Histone tail methylase 20.8 35 0.00075 36.2 0.2 18 35-52 312-329 (453)
213 PRK06545 prephenate dehydrogen 20.4 2.6E+02 0.0056 29.0 6.5 62 289-369 291-353 (359)
214 PF00837 T4_deiodinase: Iodoth 20.2 2.1E+02 0.0046 28.6 5.5 109 199-312 122-236 (237)
No 1
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=100.00 E-value=1.4e-51 Score=417.06 Aligned_cols=270 Identities=39% Similarity=0.560 Sum_probs=240.1
Q ss_pred CCCCCCCCCCCCCcccCCc-ccccCCCCCCccccccCcccCC-------CCCCChHHHHHHhhccccccCCCccccCHHH
Q 013031 149 HRHQNHHHNNNNSHHQNNQ-YEDQQEGEVPGVKDKKEKKDHQ-------HGGLNDESIQKVLNQVEYYFSDLNLATTDHL 220 (451)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~e~~~kI~kQvEyYFSD~NL~~D~fL 220 (451)
..+++.+|.++|+|..+.+ ...+..++..++...+++++.+ ...+++|+..||++||||||||+||.+|+||
T Consensus 84 n~~~~~~~~~~R~~~~~~q~~~v~~pqe~e~~~~p~de~~~~~~~s~dsk~~lsedl~~kIv~QVEyyFSDenL~~d~fL 163 (484)
T KOG1855|consen 84 NSPSLSDKRPVRGHGETKQEGGVEPPQEKEQEVKPHDEQDTKEIDSLDSKLILSEDLAAKIVDQVEYYFSDENLLKDAFL 163 (484)
T ss_pred CCcccccceeccCCcchhhccCCCCccccccccCcchhcchhhcccccccccccHHHHHHHHHHhheeeccccccchHHH
Confidence 5688999999999999887 6777777777788878777766 6778999999999999999999999999999
Q ss_pred HhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcceEEeecccccccCCCCcchhhhcccceEEEEcCCCCcc
Q 013031 221 IRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDH 300 (451)
Q Consensus 221 ~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~LeVsedg~kVRR~~Pl~e~~~~e~~~RTVyV~nLP~d~ 300 (451)
++.|++|.+|||+|++|++|+|||+|++|+.+|+.||+.|.+|+|++||++|||..|+++.+.+++++|||+|+|||.|.
T Consensus 164 lkhvrrnkeGyVpv~~vaSFKKvK~LTrd~~~va~ALr~S~kL~vseDgkKVrRisPlp~~~~eel~srtivaenLP~Dh 243 (484)
T KOG1855|consen 164 LKHVRRNKEGYVPVKLVASFKKVKALTRDWKLVADALRKSSKLEVSEDGKKVRRISPLPEFDEEELPSRTIVAENLPLDH 243 (484)
T ss_pred HHHHhcCCCCceeeehhhhHHHHHHHhhhhHHHHHHHhhcceEEEccCCceeeecCCCCCccccccccceEEEecCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEE
Q 013031 301 CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVR 380 (451)
Q Consensus 301 t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~ 380 (451)
+.|+|++||+.||.|++||||.+. .+|.+.|.......+...|-||||||+..+.|.||.+.||.+..|+.||+|+
T Consensus 244 ~~enl~kiFg~~G~IksIRIckPg----aip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 244 SYENLSKIFGTVGSIKSIRICKPG----AIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQNWRMGLKVK 319 (484)
T ss_pred HHHHHHHHhhcccceeeeeecCCC----CCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhhhhhhcchhh
Confidence 999999999999999999999884 3566677666555556679999999999999999999999999999999999
Q ss_pred EeeccCCCCCC---CCCCCCCCCCCCCCCCCccccccCCCCCCCC
Q 013031 381 LMLRRGSKPAQ---VKGKKGPEGEWQCEEEDTSTSEQHLNEKQPD 422 (451)
Q Consensus 381 l~~~r~~k~~~---g~g~~g~~~~~~~~e~~~sts~~~~~e~~~e 422 (451)
++.++..|... +|++.|...+++..+++.++.++.+.+.+..
T Consensus 320 Ll~k~a~K~~~~~~~R~~~g~~~d~E~~~~~st~~e~np~~~q~~ 364 (484)
T KOG1855|consen 320 LLGKKAPKIQIAAPVRSRGGSFSDDETVPDDSTKLERNPSDPQPS 364 (484)
T ss_pred hhhccCcccccccccccccccccCcccCcccccccccCCCCcCCC
Confidence 99988776542 4555666667777778888877777777655
No 2
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=99.94 E-value=6.8e-28 Score=198.43 Aligned_cols=80 Identities=30% Similarity=0.552 Sum_probs=78.1
Q ss_pred hHHHHHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcceEEeeccccccc
Q 013031 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (451)
Q Consensus 195 ~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~LeVsedg~kVRR 274 (451)
.+++++|++||||||||+||++|.||+++|.++.||||||++|++|+|||+|+.|.+.|++||+.|+.|+|++||++|||
T Consensus 3 ~~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VRR 82 (82)
T cd08032 3 KQLLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARALKNSSVVELNLEGTRIRR 82 (82)
T ss_pred HHHHHHHHHHHHhhcchhhcccCHHHHHHhcCCCCCCEeHHHHhcchHHHHHcCCHHHHHHHHhcCCEEEEcCCCCccCC
Confidence 57899999999999999999999999999998899999999999999999999999999999999999999999999998
No 3
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.94 E-value=1e-27 Score=195.35 Aligned_cols=76 Identities=55% Similarity=0.873 Sum_probs=74.6
Q ss_pred HHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcceEEeeccccccc
Q 013031 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (451)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~LeVsedg~kVRR 274 (451)
++|++||||||||+||++|.||+++|.+++||||||++|++|+|||+|+.|.+.|++||+.|+.|+|++||++|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al~~S~~lev~~d~~~VRR 77 (77)
T cd08033 2 QKIVKQVEYYFSDENLLKDAFLLKHVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAALRRSSKLVVSEDGKKVRR 77 (77)
T ss_pred hHHHhHHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhcchHHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999998
No 4
>cd08035 LARP_4 La RNA-binding domain of La-related protein 4. This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.93 E-value=4e-27 Score=190.22 Aligned_cols=75 Identities=33% Similarity=0.465 Sum_probs=71.5
Q ss_pred HHHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcceEEeeccccccc
Q 013031 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (451)
Q Consensus 198 ~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~LeVsedg~kVRR 274 (451)
+++|++||||||||+||++|.||+++ +|.||||||++|++|+|||+|+.|.++|++||+.|..|+|++||++||.
T Consensus 1 ~e~i~~QvEyYFSd~NL~~D~fL~~~--md~~G~Vpi~~iasF~rik~lt~d~~~I~~AL~~S~~levsedg~kVRp 75 (75)
T cd08035 1 RECLKKQLEFCFSRENLSKDLYLISQ--MDSDQFVPIWTVANMEGIKKLTTDMDLILDVLRSSPMVQVDETGEKVRP 75 (75)
T ss_pred ChHHHhhHHhhcCHhhcccCHHHHHh--hCcCCCEehHHHhccHHHHHhcCCHHHHHHHHHcCCeEEEcCCCCccCc
Confidence 36899999999999999999999998 4789999999999999999999999999999999999999999999983
No 5
>cd08036 LARP_5 La RNA-binding domain of La-related protein 5. This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.93 E-value=7.8e-27 Score=187.60 Aligned_cols=74 Identities=32% Similarity=0.489 Sum_probs=70.9
Q ss_pred HHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcceEEeeccccccc
Q 013031 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (451)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~LeVsedg~kVRR 274 (451)
+.|++||||||||+||++|.||+++| |.||||||.+|++|+|||+|+.|.+.|.+||++|..|+|+++|++||.
T Consensus 2 e~i~kQvEyYFS~~NL~~D~fLr~~m--d~~g~Vpi~~ia~F~rik~Lt~D~~lI~~aL~~S~~vevse~g~kVRp 75 (75)
T cd08036 2 ELLKKTLEFCLSRENLASDMYLISQM--DSDQYVPIMTVANLDHIKKLSTDVDLIVDVLRSLPLVQVDEKGEKVRP 75 (75)
T ss_pred hhhhcceeeeechhhccccHHHHHHh--ccCCCEehHHHhccHHHHHhcCCHHHHHHHHhhCCeEEECCCCCccCc
Confidence 57999999999999999999999995 689999999999999999999999999999999999999999999983
No 6
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.93 E-value=1.1e-26 Score=188.91 Aligned_cols=75 Identities=40% Similarity=0.650 Sum_probs=72.4
Q ss_pred HHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcceEEeeccccccc
Q 013031 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (451)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~LeVsedg~kVRR 274 (451)
++|++||||||||+||++|.||+++|.+++||||||++|++|+|||+|+.+ +.|++||+.|+.|+|++||++|||
T Consensus 2 ~~I~~QvEfYFSd~NL~~D~fLr~~~~~~~~G~Vpl~~i~~F~rmk~l~~~-~~i~~Al~~S~~lev~~d~~~VRR 76 (76)
T cd08029 2 EEIRKQVEFYFSDSNLPTDKFLWTLTGGSNNGWVPIKTIASFKRMRRFQPL-EAVVEALRESELLEVSEDGENVRR 76 (76)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhCchHHHHcCCH-HHHHHHHHhCCeEEEeCCCCcccC
Confidence 589999999999999999999999999899999999999999999999865 999999999999999999999998
No 7
>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function.
Probab=99.93 E-value=1.4e-26 Score=190.16 Aligned_cols=80 Identities=49% Similarity=0.745 Sum_probs=77.0
Q ss_pred hHHHHHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcceEEeeccccccc
Q 013031 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (451)
Q Consensus 195 ~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~LeVsedg~kVRR 274 (451)
+++.++|++||||||||+||++|.||+++|.++ ||||||++|++|+|||+++.|.+.|.+||+.|..|+|++||++|||
T Consensus 1 ~~~~~~i~~QvEfYFSd~NL~~D~fLr~~~~~~-~g~Vpl~~i~~F~r~k~l~~d~~~i~~Al~~S~~lel~~d~~~VRR 79 (80)
T smart00715 1 EELKQKIKKQVEYYFSDENLPRDKFLRKKMDKN-DGYVPISTIASFKRVKSLTTDVNLIVEALRSSPKLEVSEDGLKVRR 79 (80)
T ss_pred ChHHHHHHHHHHHHcCHhhhhhCHHHHHHhccC-CCCEEhHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCeeCc
Confidence 467899999999999999999999999999877 9999999999999999999999999999999999999999999998
Q ss_pred C
Q 013031 275 Q 275 (451)
Q Consensus 275 ~ 275 (451)
.
T Consensus 80 ~ 80 (80)
T smart00715 80 R 80 (80)
T ss_pred C
Confidence 5
No 8
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=99.93 E-value=2.3e-26 Score=189.57 Aligned_cols=79 Identities=38% Similarity=0.668 Sum_probs=75.9
Q ss_pred hHHHHHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCc--ceEEeeccccc
Q 013031 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS--KLVVSEDGKKI 272 (451)
Q Consensus 195 ~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~--~LeVsedg~kV 272 (451)
+++..+|++||||||||+||++|.||+++|.++ ||||||++|++|+|||+|+.|.+.|++||+.|+ .|||++||++|
T Consensus 2 ~~l~~~I~~QvEfYFSd~NL~~D~fLr~~m~~~-~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~~~lev~~d~~~V 80 (82)
T cd08028 2 DDLEKKIIRQIEYYFGDFNLPRDKFLKEQIKED-DGWVPMEVMLKFNRLKSLSSDPEVIAKALKKSKSGLIEVSEDKTKI 80 (82)
T ss_pred hHHHHHHHHHHHhhcCHhhhccCHHHHHHHhcc-CCCEEhHHHhCChhHHHhcCCHHHHHHHHHhCCCCEEEEcCCCCcc
Confidence 568999999999999999999999999998765 999999999999999999999999999999999 99999999999
Q ss_pred cc
Q 013031 273 KR 274 (451)
Q Consensus 273 RR 274 (451)
||
T Consensus 81 RR 82 (82)
T cd08028 81 RR 82 (82)
T ss_pred CC
Confidence 98
No 9
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.92 E-value=4.1e-26 Score=190.76 Aligned_cols=77 Identities=42% Similarity=0.708 Sum_probs=73.6
Q ss_pred HHHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcC------------HHHHHHHhhcCcceEE
Q 013031 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISS------------HSHLASVLRKSSKLVV 265 (451)
Q Consensus 198 ~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d------------~~~I~~ALr~S~~LeV 265 (451)
.++|++||||||||+||++|+||+++|.+++||||+|++|++|+|||+|+.+ .+.|++||+.|+.|+|
T Consensus 2 ~~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~V~i~~i~~F~rmk~l~~~~~~~~~~~~~~~~~~I~~ALk~S~~lev 81 (90)
T cd08030 2 KEKVLRQVEFYFSDSNLPRDDFLLEEVEEDPDGMVSLALICSFSRMRSLLGLGGGKPEDVPEDTLKAVAEALRTSTLLKV 81 (90)
T ss_pred hHHHHHHHHcccchhhcccCHHHHHHhccCCCCCEehHHHhcChHHHHHhhcccccccccchhHHHHHHHHHccCCEEEE
Confidence 5799999999999999999999999999999999999999999999999853 6899999999999999
Q ss_pred eeccccccc
Q 013031 266 SEDGKKIKR 274 (451)
Q Consensus 266 sedg~kVRR 274 (451)
++||++|||
T Consensus 82 seD~~~VRR 90 (90)
T cd08030 82 SEDGKRVGR 90 (90)
T ss_pred cCCCCccCC
Confidence 999999998
No 10
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.92 E-value=1e-25 Score=182.75 Aligned_cols=74 Identities=38% Similarity=0.624 Sum_probs=70.9
Q ss_pred HHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcceEEeeccccccc
Q 013031 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (451)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~LeVsedg~kVRR 274 (451)
++|++||||||||+||++|.||+++| +.||||||++|++|+|||+|+.|.+.|++||+.|+.|+|++||++||.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~m--~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VR~ 75 (75)
T cd08031 2 ELLKRQLEYYFSRENLANDAYLLSQM--DSDQYVPIWTIANFNKIKKLTTDIDLIVEALRESPNVQVDEKGEKVRP 75 (75)
T ss_pred hHHHHHHHHHcCHhhhccCHHHHHHh--CCCCCEEHHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCc
Confidence 68999999999999999999999985 678999999999999999999999999999999999999999999984
No 11
>cd08037 LARP_1 La RNA-binding domain of La-related protein 1. This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.91 E-value=4.9e-25 Score=177.49 Aligned_cols=72 Identities=32% Similarity=0.556 Sum_probs=67.7
Q ss_pred HHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcceEEeeccccccc
Q 013031 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (451)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~LeVsedg~kVRR 274 (451)
++|++||||||||+||++|.||+++| ++||||||++|++|+|||+|+.|.+.|++||+.|+.|||+++ +|||
T Consensus 2 ~~I~~QvEyYFSd~NL~~D~fLr~~m--d~dG~Vpi~~ia~F~rmk~Lt~d~~~I~~Al~~S~~vev~~~--~~r~ 73 (73)
T cd08037 2 DYIKRQIEYYFSVDNLERDFFLRRKM--DEDGFLPVTLIASFHRVQALTTDISLIIKALKDSKVVEIIDM--KIRR 73 (73)
T ss_pred hHHHHHHHHhccHhhhccCHHHHHHh--ccCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEecc--hhcC
Confidence 68999999999999999999999985 789999999999999999999999999999999999999877 5665
No 12
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.90 E-value=7.7e-25 Score=176.36 Aligned_cols=72 Identities=32% Similarity=0.588 Sum_probs=67.5
Q ss_pred HHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcceEEeeccccccc
Q 013031 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (451)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~LeVsedg~kVRR 274 (451)
++|++||||||||+||++|.||+++| +.+|||||++|++|+|||+|+.|.++|.+||+.|+.||++++ +|||
T Consensus 2 e~I~~QvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~ia~F~rmk~lt~d~~~I~~Al~~S~~ve~~~~--~~r~ 73 (73)
T cd08038 2 EYIKRQIEYYFSTENLERDFFLRRKM--DLQGFLPISLIAGFYRVQALTTNVDLILEALKDSTEVEIVDQ--KIRR 73 (73)
T ss_pred hHHHhhHHhhcchhhhccCHHHHHHh--CCCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEeCC--cccC
Confidence 68999999999999999999999985 789999999999999999999999999999999999999877 4554
No 13
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.90 E-value=1.3e-24 Score=175.49 Aligned_cols=72 Identities=33% Similarity=0.601 Sum_probs=68.0
Q ss_pred HHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcceEEeeccccccc
Q 013031 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (451)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~LeVsedg~kVRR 274 (451)
++|++||||||||+||++|.||+++| ++||||||++|++|+|||+|+.|.+.|.+||+.|+.|+|++ .+|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~lev~e--~kvR~ 73 (73)
T cd08034 2 EYIKKQIEYYFSVDNLEKDFFLRRKM--DPEGYLPIALIASFHRVQALTTDVNLILEALKDSTVVELVD--EKVRC 73 (73)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHc--CCCCCEeHHHHhccHHHHHHcCCHHHHHHHHHcCCeEEEec--CeecC
Confidence 68999999999999999999999985 78999999999999999999999999999999999999998 46775
No 14
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.90 E-value=2.1e-24 Score=175.37 Aligned_cols=74 Identities=43% Similarity=0.723 Sum_probs=71.9
Q ss_pred HHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcceEEeeccccccc
Q 013031 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (451)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~LeVsedg~kVRR 274 (451)
++|++||||||||+||++|.||+++| +++|||||++|++|+||++++.+.+.|++||+.|..|+|++++++|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~--~~~g~Vpl~~i~~F~r~k~l~~~~~~i~~Al~~s~~lel~~~~~~Vrr 75 (75)
T cd07323 2 EKIKKQVEYYFSDENLCKDRFLRSLM--DDDGWVPLSLLASFNRVKKLTTDVELILEALRDSSVVEVSEDGTKVRR 75 (75)
T ss_pred hHHHhhhHhccCHhhhCcCHHHHHhc--CCCCCEEHHHHhCchHHHHHcCCHHHHHHHHHhCCeEEEeCCCCccCC
Confidence 58999999999999999999999997 889999999999999999999999999999999999999999999997
No 15
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=99.89 E-value=1.4e-23 Score=218.79 Aligned_cols=156 Identities=28% Similarity=0.404 Sum_probs=134.2
Q ss_pred CCCCCChHHHHHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcceEEeec
Q 013031 189 QHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSED 268 (451)
Q Consensus 189 ~~~~~~~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~LeVsed 268 (451)
-...++.++++.|++|||||||.+||..|.||..+ ||.|.||||.+++.|.+|++|++|.++|.++||.|..|+|+++
T Consensus 88 ~~~Pls~~~kq~lk~qlEy~fSreNlssD~YL~sQ--MDSDqyVPI~tva~~~~i~klttDvdLI~Evlresp~VqvDek 165 (684)
T KOG2591|consen 88 PSPPLSRDLKQLLKKQLEYYFSRENLSSDRYLISQ--MDSDQYVPINTVANFPEIMKLTTDVDLIVEVLRESPNVQVDEK 165 (684)
T ss_pred CCCccchhHHHHHHHHHHHhhccccccchhhhhhh--cccccccchhhhccchhhhhhccchHHHHHHHhcCCCceeccC
Confidence 33456779999999999999999999999999998 7899999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcchhhhcccceEEEEcCCCCcccHHHHHHHHhc--CCceEEEEEeCCCCCCCCCCCCCccccccCcccCC
Q 013031 269 GKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSA--VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSN 346 (451)
Q Consensus 269 g~kVRR~~Pl~e~~~~e~~~RTVyV~nLP~d~t~e~L~e~Fs~--fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~ 346 (451)
|.+||... ++|+|+++-|++.+.+|+++.||+. |-++.+ ++|+.
T Consensus 166 gekVrp~~----------kRcIvilREIpettp~e~Vk~lf~~encPk~is------------------------cefa~ 211 (684)
T KOG2591|consen 166 GEKVRPNH----------KRCIVILREIPETTPIEVVKALFKGENCPKVIS------------------------CEFAH 211 (684)
T ss_pred ccccccCc----------ceeEEEEeecCCCChHHHHHHHhccCCCCCcee------------------------eeeee
Confidence 99999875 4678899999999999999999986 333333 44555
Q ss_pred ccEEEEEeCCHHHHHHHHHHHcCCC--CCCCceEEE
Q 013031 347 KLHAFVEYESVELAEKAIAELNDEG--NWRSGLRVR 380 (451)
Q Consensus 347 KG~AFVEFet~EdAekAv~~Lng~~--~~~~gLrV~ 380 (451)
...|||+|++.+||++|++.|..+. +.++.|..|
T Consensus 212 N~nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 212 NDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred cCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 6679999999999999999887643 444555443
No 16
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=99.87 E-value=8.2e-23 Score=188.15 Aligned_cols=155 Identities=26% Similarity=0.347 Sum_probs=130.4
Q ss_pred ChHHHHHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCc--ceEEeecccc
Q 013031 194 NDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS--KLVVSEDGKK 271 (451)
Q Consensus 194 ~~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~--~LeVsedg~k 271 (451)
...+.++|+.||||||+|.||++|+||+++|.+..+|||||.+++.|+|+..+++|.+.|+.||++|. ++++++|.++
T Consensus 10 ~a~lE~kii~qleyy~Gd~nl~rdkfl~eqi~k~~~gwvpi~i~i~FnRla~lttD~~~Iv~al~ksk~~l~eisedk~k 89 (205)
T KOG4213|consen 10 MAALEAKIIHQLEYYFGDLNLPRDKFLREQIHKLDDGWVPIEIMIKFNRLASLTTDFNVIVEALSKSKAELMEISEDKTK 89 (205)
T ss_pred hhHHHHhhhhhhhhhhcccCchHHHHHHHHhhhhccCCccchhhhhhhhhhhccccHHHHHHHHhhCHHhhhhhhhchhh
Confidence 35677889999999999999999999999998889999999999999999999999999999999886 7899999999
Q ss_pred cccCC--CCcc---hhhhcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCC
Q 013031 272 IKRQN--PLTE---SDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSN 346 (451)
Q Consensus 272 VRR~~--Pl~e---~~~~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~ 346 (451)
+||.. |+++ .....+..|++|.+ +.+...++|..+-+ |++.+|.+++-.. .....
T Consensus 90 ~rr~~skplpEvt~e~~~~~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~----------------k~~~f 149 (205)
T KOG4213|consen 90 IRRSPSKPLPEVTDEYKEGIKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGN----------------KAHPF 149 (205)
T ss_pred hhcCcCCCCccccHHHHHHHHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCC----------------CCCCC
Confidence 99975 6665 33456778999999 56666777777777 8999999864321 11234
Q ss_pred ccEEEEEeCCHHHHHHHHHHHc
Q 013031 347 KLHAFVEYESVELAEKAIAELN 368 (451)
Q Consensus 347 KG~AFVEFet~EdAekAv~~Ln 368 (451)
+|..||+|.+.+.|..+++.-.
T Consensus 150 kGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 150 KGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred CCceEEEeecHHHHHhhhhhhh
Confidence 8999999999999988777543
No 17
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=99.84 E-value=3.9e-22 Score=156.02 Aligned_cols=60 Identities=40% Similarity=0.678 Sum_probs=55.2
Q ss_pred HhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhh-cCHHHHHHHhhcC
Q 013031 201 VLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAII-SSHSHLASVLRKS 260 (451)
Q Consensus 201 I~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt-~d~~~I~~ALr~S 260 (451)
|++||||||||+||.+|+||+++|.+++||||||++|++|+|||+++ .|.+.|.+||++|
T Consensus 1 I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpi~~i~~F~r~k~l~~~~~~~I~~al~~S 61 (61)
T PF05383_consen 1 IKKQVEFYFSDENLPRDKFLRSQMDSNPDGWVPISTILSFNRMKALTNTDIELIVDALRDS 61 (61)
T ss_dssp HHHHHHHHTSHHHHCC-HHHHHHHCTTTTTBEEHHHHTTSHHHHHH--S-HHHHHHHHHTS
T ss_pred ChhHHHHhcCHHHhCcCHHHHHHHHhcCCCcEeHHHHHchHHHHHHhcCCHHHHHHHHHcC
Confidence 78999999999999999999999999889999999999999999999 8999999999986
No 18
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.63 E-value=1.6e-15 Score=137.48 Aligned_cols=86 Identities=21% Similarity=0.258 Sum_probs=75.7
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+||+.++|+++|+++|++||.|+.|+|..+..+++ .||||||+|++.|+|++|++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-----------------~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGR-----------------SRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCC-----------------cceEEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999999999999987754332 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccCCCC
Q 013031 367 LNDEGNWRSGLRVRLMLRRGSKP 389 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~~k~ 389 (451)
||+..+.++.|+|.++..+....
T Consensus 96 lng~~i~Gr~l~V~~a~~~~~~~ 118 (144)
T PLN03134 96 MDGKELNGRHIRVNPANDRPSAP 118 (144)
T ss_pred cCCCEECCEEEEEEeCCcCCCCC
Confidence 99999999999999987665543
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.55 E-value=5.5e-14 Score=144.29 Aligned_cols=116 Identities=22% Similarity=0.261 Sum_probs=84.6
Q ss_pred CHHHHHHHhhcCcceEEeecccccccCCCCcchhhhcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCC
Q 013031 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (451)
Q Consensus 249 d~~~I~~ALr~S~~LeVsedg~kVRR~~Pl~e~~~~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~ 328 (451)
+.+...+||+..+.++|.....+|....+- .+....++|||+||+.++|+++|+++|++||+|+.|+|.+++.+++
T Consensus 158 ~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~----~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~ 233 (346)
T TIGR01659 158 SEADSQRAIKNLNGITVRNKRLKVSYARPG----GESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGT 233 (346)
T ss_pred cHHHHHHHHHHcCCCccCCceeeeeccccc----ccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCc
Confidence 455556666654444443332233322221 1233467899999999999999999999999999999987654332
Q ss_pred CCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCC--CceEEEEeecc
Q 013031 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWR--SGLRVRLMLRR 385 (451)
Q Consensus 329 ~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~--~gLrV~l~~~r 385 (451)
.||||||+|++.|+|++||+.||+..+.+ +.|+|+++..+
T Consensus 234 -----------------~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 234 -----------------PRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred -----------------cceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 28999999999999999999999987755 45888877654
No 20
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=9.6e-15 Score=129.05 Aligned_cols=106 Identities=21% Similarity=0.167 Sum_probs=90.0
Q ss_pred cccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 285 e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
..+++||||+||.+.+++|.|-++|+++|.|+.|-|-.++. .|. .+|||||||-+.++|+.|+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~-----------kkt------pCGFCFVeyy~~~dA~~Al 95 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRF-----------KKT------PCGFCFVEYYSRDDAEDAL 95 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccC-----------CcC------ccceEEEEEecchhHHHHH
Confidence 34678999999999999999999999999999999987753 222 3899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeccCCCCCCCCCCCCCCCCCCCCCC
Q 013031 365 AELNDEGNWRSGLRVRLMLRRGSKPAQVKGKKGPEGEWQCEEE 407 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~r~~k~~~g~g~~g~~~~~~~~e~ 407 (451)
+.+|+..+..+.|+|++...-.....-|+|+.||+..++.-.+
T Consensus 96 ryisgtrLddr~ir~D~D~GF~eGRQyGRG~sGGqVrde~r~d 138 (153)
T KOG0121|consen 96 RYISGTRLDDRPIRIDWDAGFVEGRQYGRGKSGGQVRDEYRTD 138 (153)
T ss_pred HHhccCcccccceeeeccccchhhhhhcCCCCCCeechhhhhh
Confidence 9999999999999999887665554558999999886554433
No 21
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.53 E-value=3e-14 Score=144.01 Aligned_cols=82 Identities=22% Similarity=0.219 Sum_probs=74.2
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
.++|||+|||.++++++|+++|++||.|++|+|+++..++. .||||||+|++.++|.+||+.|
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~-----------------skG~aFV~F~~~~~A~~Ai~~l 331 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQ-----------------CKGYGFVSMTNYDEAAMAILSL 331 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCC-----------------ccceEEEEECCHHHHHHHHHHh
Confidence 34799999999999999999999999999999998764433 3899999999999999999999
Q ss_pred cCCCCCCCceEEEEeeccC
Q 013031 368 NDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 368 ng~~~~~~gLrV~l~~~r~ 386 (451)
||..++++.|+|.+...+.
T Consensus 332 nG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 332 NGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred CCCEECCeEEEEEEccCCC
Confidence 9999999999999987654
No 22
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=2.9e-15 Score=152.60 Aligned_cols=164 Identities=26% Similarity=0.326 Sum_probs=135.2
Q ss_pred cccCCCCCCChHHHHH---------------HhhccccccC-----CCccccCHHHHhhhccC--CCCceecccccchhh
Q 013031 185 KKDHQHGGLNDESIQK---------------VLNQVEYYFS-----DLNLATTDHLIRFILKD--PEGYVPISTVASFKK 242 (451)
Q Consensus 185 ~~~~~~~~~~~e~~~k---------------I~kQvEyYFS-----D~NL~~D~fL~~~i~kd--~dG~VPi~~i~sFkK 242 (451)
.....+.+++++.+.+ +..|+||||| |.|+.+|+||+..-.++ .+|||+|.++++|++
T Consensus 44 ~t~~~~eE~~~~sksKk~d~~ps~l~~~~kw~l~qvE~~fS~s~~~d~n~~~dk~~ktta~Kn~~~~kwVpIkt~~tfn~ 123 (438)
T COG5193 44 NTVIPVEELTESSKSKKEDKNPSKLTSNTKWTLKQVEFYFSGSKDTDSNFPKDKFLKTTAPKNKKRDKWVPIKTIATFNR 123 (438)
T ss_pred CCCcchhhccchhhhcccccCccccccCccccccceeEEeeccccccccccchhhhccccccccCCCCceeeeeeeeecc
Confidence 3445666778888888 9999999999 99999999999875433 489999999999999
Q ss_pred HHHhhcCHHHHHHHhhcC---cceEEeecccccccCCCCcchhhh--cccceEEEEcCCCCcccH--------HHHHHHH
Q 013031 243 IKAIISSHSHLASVLRKS---SKLVVSEDGKKIKRQNPLTESDLE--ELQSRIVVAENLPEDHCH--------QNLMKIF 309 (451)
Q Consensus 243 mK~Lt~d~~~I~~ALr~S---~~LeVsedg~kVRR~~Pl~e~~~~--e~~~RTVyV~nLP~d~t~--------e~L~e~F 309 (451)
|+.+....+.+..||++| ..++++.+|.+++|..++.....+ ....|.+|+.+|....+. ++++..|
T Consensus 124 ~k~~gs~~~~v~~a~rks~~~rv~e~Sssgsn~~r~~k~~s~n~~s~~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~ 203 (438)
T COG5193 124 MKNSGSPVSAVSGALRKSLDARVLEVSSSGSNKNRTEKLISNNNKSTSQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQF 203 (438)
T ss_pred ccccCCchhhhhhhhhcCcccceeeeccccccccccchhhhhhhhhhhhHhhhHHhhcCCcccccccccchhhhhHHhhC
Confidence 999999999999999999 789999999999998876544333 455689999999875543 4999999
Q ss_pred hc--CCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 310 SA--VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 310 s~--fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
.. .+.+..|+++++.. . . .++|..|++|+..+.|+++..
T Consensus 204 p~h~h~~~~~i~~rrd~~----------n-----k--n~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 204 PPHYHAPPSQIRNRRDWL----------N-----K--NFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred CCcccCChhhccchhhhh----------h-----c--cccCcccccccChHHHHHHhc
Confidence 99 78889999876531 1 1 137889999999999999874
No 23
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.46 E-value=1.3e-13 Score=106.68 Aligned_cols=70 Identities=39% Similarity=0.499 Sum_probs=60.7
Q ss_pred EEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCC
Q 013031 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (451)
Q Consensus 291 VyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~ 370 (451)
|||+|||.++|+++|+++|+.||.|..+.+.... .+ ..+++|||+|++.++|++|++.|++.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~-~~-----------------~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNS-SG-----------------KSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEET-TS-----------------SEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccc-cc-----------------cccceEEEEEcCHHHHHHHHHHcCCC
Confidence 7999999999999999999999999999997541 10 12899999999999999999999998
Q ss_pred CCCCCceE
Q 013031 371 GNWRSGLR 378 (451)
Q Consensus 371 ~~~~~gLr 378 (451)
.+.++.||
T Consensus 63 ~~~~~~ir 70 (70)
T PF00076_consen 63 KINGRKIR 70 (70)
T ss_dssp EETTEEEE
T ss_pred EECccCcC
Confidence 87776554
No 24
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.45 E-value=2.1e-13 Score=137.77 Aligned_cols=80 Identities=20% Similarity=0.322 Sum_probs=71.7
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
..+|||+|||.++|+++|+++|+.||+|..|+|++++.+++ .+|||||+|.+.++|++||+.|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~-----------------s~g~afV~f~~~~~A~~Ai~~l 65 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQ-----------------SLGYGFVNYVRPEDAEKAVNSL 65 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCc-----------------cceEEEEEECcHHHHHHHHhhc
Confidence 46899999999999999999999999999999998754332 3899999999999999999999
Q ss_pred cCCCCCCCceEEEEeec
Q 013031 368 NDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 368 ng~~~~~~gLrV~l~~~ 384 (451)
|+..+.++.|+|.++..
T Consensus 66 ~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 66 NGLRLQNKTIKVSYARP 82 (352)
T ss_pred ccEEECCeeEEEEeecc
Confidence 99999999999987653
No 25
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.44 E-value=3.1e-13 Score=138.80 Aligned_cols=80 Identities=24% Similarity=0.331 Sum_probs=72.2
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++|+++|+++|+.||.|+.|+|+++..+++ .||||||+|+++|+|++||++
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~-----------------srGyaFVeF~~~e~A~~Ai~~ 168 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGY-----------------SFGYAFVDFGSEADSQRAIKN 168 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCc-----------------cCcEEEEEEccHHHHHHHHHH
Confidence 568999999999999999999999999999999987754332 289999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 013031 367 LNDEGNWRSGLRVRLML 383 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~ 383 (451)
||+..+.++.|+|.++.
T Consensus 169 LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 169 LNGITVRNKRLKVSYAR 185 (346)
T ss_pred cCCCccCCceeeeeccc
Confidence 99999999999998764
No 26
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.42 E-value=1.9e-12 Score=140.87 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=89.9
Q ss_pred CHHHHHHHhhcCcceEEeecccccccCCCCcc------hh-hhcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEe
Q 013031 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTE------SD-LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (451)
Q Consensus 249 d~~~I~~ALr~S~~LeVsedg~kVRR~~Pl~e------~~-~~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~ 321 (451)
+.+....||+..+...+.....+|+|....+. .. .+....++|||+||+.++++++|+++|+.||.|++++|.
T Consensus 158 s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~ 237 (612)
T TIGR01645 158 VPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLA 237 (612)
T ss_pred cHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEE
Confidence 45566667766555566544444554332211 00 111235799999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeecc
Q 013031 322 LPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 322 ~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~l~~~r 385 (451)
++..+++ .||||||+|++.++|.+|++.||+..+.|+-|+|..+...
T Consensus 238 ~D~~tgk-----------------sKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 238 RAPTGRG-----------------HKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred ecCCCCC-----------------cCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 7654322 3899999999999999999999999999999999877643
No 27
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.39 E-value=1.2e-12 Score=141.26 Aligned_cols=82 Identities=23% Similarity=0.334 Sum_probs=72.9
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+||+.++|+++|+++|+.||.|++|+++.+. ++ ..||||||+|++.|+|++|+++
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~-~g-----------------~~~g~gfV~f~~~~~A~~A~~~ 345 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE-KG-----------------VSRGFGFVCFSNPEEANRAVTE 345 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC-CC-----------------CcCCeEEEEeCCHHHHHHHHHH
Confidence 45789999999999999999999999999999998762 11 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccC
Q 013031 367 LNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~ 386 (451)
||+..+.++.|+|.++..+.
T Consensus 346 ~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 346 MHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred hcCCeeCCceeEEEeccCcH
Confidence 99999999999999987653
No 28
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.38 E-value=1.8e-12 Score=127.62 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=67.9
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
.|+|||+||++++|+++|+++|+.||+|+.|+|++++. .+|||||+|++.++|+.|+. |
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--------------------~~GfAFVtF~d~eaAe~All-L 62 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--------------------RSQIAYVTFKDPQGAETALL-L 62 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--------------------CCCEEEEEeCcHHHHHHHHH-h
Confidence 57999999999999999999999999999999976531 26899999999999999996 9
Q ss_pred cCCCCCCCceEEEEee
Q 013031 368 NDEGNWRSGLRVRLML 383 (451)
Q Consensus 368 ng~~~~~~gLrV~l~~ 383 (451)
|+..++++.|+|....
T Consensus 63 nG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 63 SGATIVDQSVTITPAE 78 (260)
T ss_pred cCCeeCCceEEEEecc
Confidence 9999999999998764
No 29
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.36 E-value=1.2e-12 Score=142.32 Aligned_cols=134 Identities=16% Similarity=0.121 Sum_probs=91.5
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+||++++++++|+++|++||.|+.|+|.+++.+++ +||||||+|++.++|++|++.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~Tgk-----------------skGfAFVeF~s~e~A~~Ai~~ 168 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGK-----------------HKGFAFVEYEVPEAAQLALEQ 168 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCC-----------------cCCeEEEEeCcHHHHHHHHHh
Confidence 357899999999999999999999999999999988764432 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCccccccCCccceeeeeh
Q 013031 367 LNDEGNWRSGLRVRLMLRRGSKPAQVKGKKGPEGEWQCEEEDTSTSEQHLNEKQPDDSSQQSDVQSHDHTVSASIVSH 444 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~~k~~~g~g~~g~~~~~~~~e~~~sts~~~~~e~~~e~~~~~~~~~~~~~~~~~~~~~~ 444 (451)
||+..++++.|+|......... +........+.........++ -+.+...++....+.. +|.+.+++|+-.
T Consensus 169 lnG~~i~GR~IkV~rp~~~p~a----~~~~~~~~~~~~~~~rLfVgn-Lp~~vteedLk~lFs~--FG~I~svrl~~D 239 (612)
T TIGR01645 169 MNGQMLGGRNIKVGRPSNMPQA----QPIIDMVQEEAKKFNRIYVAS-VHPDLSETDIKSVFEA--FGEIVKCQLARA 239 (612)
T ss_pred cCCeEEecceeeeccccccccc----ccccccccccccccceEEeec-CCCCCCHHHHHHHHhh--cCCeeEEEEEec
Confidence 9999999999999843221110 000000000000111223344 4444444555555443 677888888753
No 30
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.36 E-value=1.1e-12 Score=141.58 Aligned_cols=84 Identities=23% Similarity=0.273 Sum_probs=70.7
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+||+.++|+++|+++|+.||.|.+|+++.+.. + ..+|||||+|++.++|.+|++
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~-g-----------------~~~G~afV~F~~~e~A~~Av~ 237 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGS-G-----------------RSRGFAFVNFEKHEDAAKAVE 237 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-C-----------------CcccEEEEEECCHHHHHHHHH
Confidence 3457899999999999999999999999999999976531 1 138999999999999999999
Q ss_pred HHcCCCCC----CCceEEEEeeccCC
Q 013031 366 ELNDEGNW----RSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~~~----~~gLrV~l~~~r~~ 387 (451)
.||+..++ ++.|.|..+..+..
T Consensus 238 ~l~g~~i~~~~~g~~l~v~~a~~k~e 263 (562)
T TIGR01628 238 EMNGKKIGLAKEGKKLYVGRAQKRAE 263 (562)
T ss_pred HhCCcEecccccceeeEeecccChhh
Confidence 99999888 66777776655443
No 31
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.34 E-value=8.5e-12 Score=135.38 Aligned_cols=76 Identities=30% Similarity=0.335 Sum_probs=69.5
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcC--CceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAV--GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~f--G~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
.++|||+||+.++++++|+++|++| |+|+.|+++ ++||||+|++.|+|++|++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------------------------rgfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------------------------RDYAFVHFEDREDAVKAMD 287 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------------------------cCeEEEEeCCHHHHHHHHH
Confidence 5799999999999999999999999 999999763 5699999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
+||+..++++.|+|.++..+..+
T Consensus 288 ~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 288 ELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HhCCCEECCEEEEEEEccCCCcc
Confidence 99999999999999999765443
No 32
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=3.6e-12 Score=118.00 Aligned_cols=78 Identities=27% Similarity=0.313 Sum_probs=69.9
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
.+.|||+||+.+++..+|+.+|..||.|.+|+|.+. .-|||||||++.-||+.|+..|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----------------------PPGfAFVEFed~RDA~DAvr~L 67 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----------------------PPGFAFVEFEDPRDAEDAVRYL 67 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----------------------CCCceEEeccCcccHHHHHhhc
Confidence 568999999999999999999999999999999531 2689999999999999999999
Q ss_pred cCCCCCCCceEEEEeeccCC
Q 013031 368 NDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 368 ng~~~~~~gLrV~l~~~r~~ 387 (451)
++..+.+.-|+|.+-..+..
T Consensus 68 DG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 68 DGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCccccCceEEEEeecCCcc
Confidence 99999998899998765443
No 33
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.32 E-value=1.2e-11 Score=131.36 Aligned_cols=80 Identities=23% Similarity=0.271 Sum_probs=71.7
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
.++|||+|||..+|+++|+++|+.||.|+.+.|+.+..++. ++|||||+|++.++|++|++.|
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~-----------------~~g~afv~f~~~~~a~~A~~~l 357 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGL-----------------SKGYAFCEYKDPSVTDVAIAAL 357 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCC-----------------cCeEEEEEECCHHHHHHHHHHc
Confidence 57999999999999999999999999999999987643322 3899999999999999999999
Q ss_pred cCCCCCCCceEEEEeec
Q 013031 368 NDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 368 ng~~~~~~gLrV~l~~~ 384 (451)
|+..++++.|+|.++..
T Consensus 358 ~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 358 NGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCCEECCeEEEEEECcc
Confidence 99999999999998864
No 34
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.31 E-value=6.1e-12 Score=131.97 Aligned_cols=81 Identities=27% Similarity=0.288 Sum_probs=71.2
Q ss_pred cccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 285 e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
+...++|||+|||.++++++|+++|++||.|..|+|+.++.+++ .||||||+|.+.++|++||
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~-----------------skg~afVeF~~~e~A~~Al 148 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRR-----------------SKGVAYVEFYDVESVIKAL 148 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCC-----------------cceEEEEEECCHHHHHHHH
Confidence 45678999999999999999999999999999999988754332 3899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 013031 365 AELNDEGNWRSGLRVRLML 383 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~ 383 (451)
. |++..+.++.|.|....
T Consensus 149 ~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 149 A-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred H-hCCCEECCeeeEEeecc
Confidence 7 89999888888887654
No 35
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.30 E-value=6.1e-12 Score=98.53 Aligned_cols=69 Identities=32% Similarity=0.422 Sum_probs=56.6
Q ss_pred EEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCC
Q 013031 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (451)
Q Consensus 291 VyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~ 370 (451)
|||+|||.++++++|+++|+.||.|..|++.+.+. + ..+|+|||+|.+.++|++|++.+++.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~-----------------~~~~~a~v~f~~~~~a~~al~~~~~~ 62 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-G-----------------QSRGFAFVEFSSEEDAKRALELLNGK 62 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-S-----------------SEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-c-----------------ccCCEEEEEeCCHHHHHHHHHHCCCc
Confidence 79999999999999999999999999999976532 1 13899999999999999999998866
Q ss_pred CCCCCce
Q 013031 371 GNWRSGL 377 (451)
Q Consensus 371 ~~~~~gL 377 (451)
.+.++.|
T Consensus 63 ~~~g~~l 69 (70)
T PF14259_consen 63 EIDGRKL 69 (70)
T ss_dssp EETTEEE
T ss_pred EECCEEc
Confidence 6555443
No 36
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=6.4e-12 Score=121.52 Aligned_cols=81 Identities=31% Similarity=0.357 Sum_probs=72.6
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
+..||-|.||++++++++|+++|.+||.|..|.|.+++.+|. .||||||.|++.|+|.+||+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~-----------------~kGFAFVtF~sRddA~rAI~~ 250 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGL-----------------SKGFAFVTFESRDDAARAIAD 250 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCc-----------------ccceEEEEEecHHHHHHHHHH
Confidence 567999999999999999999999999999999999887654 299999999999999999999
Q ss_pred HcCCCCCCCceEEEEeec
Q 013031 367 LNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~ 384 (451)
|||.....-.|+|.+...
T Consensus 251 LnG~gyd~LILrvEwskP 268 (270)
T KOG0122|consen 251 LNGYGYDNLILRVEWSKP 268 (270)
T ss_pred ccCcccceEEEEEEecCC
Confidence 999877666788887653
No 37
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=1.6e-11 Score=121.49 Aligned_cols=84 Identities=21% Similarity=0.222 Sum_probs=75.9
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
.-+||||..|++++++..|++.|+.||.|+.|+|++++.+|+. ||||||||+++-+...|++.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgks-----------------kGYAFIeye~erdm~~AYK~ 162 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKS-----------------KGYAFIEYEHERDMKAAYKD 162 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCc-----------------cceEEEEeccHHHHHHHHHh
Confidence 4689999999999999999999999999999999999876653 99999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccCC
Q 013031 367 LNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~~ 387 (451)
.++..+.++-|-|++-..+..
T Consensus 163 adG~~Idgrri~VDvERgRTv 183 (335)
T KOG0113|consen 163 ADGIKIDGRRILVDVERGRTV 183 (335)
T ss_pred ccCceecCcEEEEEecccccc
Confidence 999999998888887765543
No 38
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.28 E-value=2.6e-11 Score=127.21 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=71.9
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
.++|||+||+.++|+++|+++|+.||.|..|+|.++..+++ .+|||||+|.+.++|++|++.|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~-----------------~~g~afV~f~~~e~A~~A~~~l 248 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGR-----------------SKGFGFIQFHDAEEAKEALEVM 248 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCc-----------------cceEEEEEECCHHHHHHHHHhc
Confidence 58999999999999999999999999999999987653322 3899999999999999999999
Q ss_pred cCCCCCCCceEEEEeec
Q 013031 368 NDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 368 ng~~~~~~gLrV~l~~~ 384 (451)
|+..+.++.|+|.++..
T Consensus 249 ~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 249 NGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCcEECCEEEEEEEccC
Confidence 99999999999999763
No 39
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=1.4e-11 Score=105.61 Aligned_cols=78 Identities=26% Similarity=0.289 Sum_probs=68.1
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
-.|.|||+|||+++|.|++-++|++||.|..|||.-.+ ..+|.|||.|++..+|++|++.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--------------------~TrGTAFVVYedi~dAk~A~dh 76 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--------------------ETRGTAFVVYEDIFDAKKACDH 76 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--------------------CcCceEEEEehHhhhHHHHHHH
Confidence 36899999999999999999999999999999994332 2389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeec
Q 013031 367 LNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~ 384 (451)
|+|....++-|.|-+...
T Consensus 77 lsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 77 LSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hcccccCCceEEEEecCH
Confidence 999888888788776654
No 40
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=1.5e-11 Score=109.81 Aligned_cols=86 Identities=24% Similarity=0.370 Sum_probs=75.8
Q ss_pred cccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 285 e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
.+...+|||.++.+++|+++|.+.|..||+|++|.+-.++.+|- -||||+|||++.++|++|+
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy-----------------~KGYaLvEYet~keAq~A~ 131 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGY-----------------VKGYALVEYETLKEAQAAI 131 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeecccccccc-----------------ccceeeeehHhHHHHHHHH
Confidence 44567999999999999999999999999999999987764321 2999999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeccCC
Q 013031 365 AELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
..||+..+.+..|.|.+.--+..
T Consensus 132 ~~~Ng~~ll~q~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 132 DALNGAELLGQNVSVDWCFVKGP 154 (170)
T ss_pred HhccchhhhCCceeEEEEEecCC
Confidence 99999999999999998865544
No 41
>smart00362 RRM_2 RNA recognition motif.
Probab=99.26 E-value=2.4e-11 Score=92.12 Aligned_cols=71 Identities=38% Similarity=0.496 Sum_probs=60.7
Q ss_pred EEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 013031 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (451)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng 369 (451)
+|||+|||.+++.++|+++|+.||.|..+++.... + ..+|+|||+|.+.++|++|++.|++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~-----------------~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--G-----------------KSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--C-----------------CCCceEEEEeCCHHHHHHHHHHhCC
Confidence 58999999999999999999999999999987542 1 1378999999999999999999998
Q ss_pred CCCCCCceEE
Q 013031 370 EGNWRSGLRV 379 (451)
Q Consensus 370 ~~~~~~gLrV 379 (451)
..+.+..|+|
T Consensus 62 ~~~~~~~i~v 71 (72)
T smart00362 62 TKLGGRPLRV 71 (72)
T ss_pred cEECCEEEee
Confidence 7776655554
No 42
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=5.8e-12 Score=129.57 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=99.3
Q ss_pred CCccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcceEEeecccccccCCCCcchhhhcccceE
Q 013031 211 DLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRI 290 (451)
Q Consensus 211 D~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~LeVsedg~kVRR~~Pl~e~~~~e~~~RT 290 (451)
..||.||+--.. ..|+- |+.|.+.| +.+....||.+-..|.=--.-..||-.+--.+ +-..+|.
T Consensus 63 einl~kDk~t~~-----s~gcC----Fv~~~trk----~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~e---r~~~e~K 126 (510)
T KOG0144|consen 63 EINLIKDKSTGQ-----SKGCC----FVKYYTRK----EADEAINALHNQKTLPGMHHPVQVKYADGERE---RIVEERK 126 (510)
T ss_pred EEEeecccccCc-----ccceE----EEEeccHH----HHHHHHHHhhcccccCCCCcceeecccchhhh---ccccchh
Confidence 568899876442 22321 33444333 34556677766543311111112222221111 1134789
Q ss_pred EEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCC
Q 013031 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (451)
Q Consensus 291 VyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~ 370 (451)
|||+-|+..+|+++|+++|++||.|++++|+++.. ...||||||.|.++|.|..||+.||+.
T Consensus 127 LFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~------------------~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 127 LFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD------------------GLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred hhhhhccccccHHHHHHHHHhhCccchhhheeccc------------------ccccceeEEEEehHHHHHHHHHhhccc
Confidence 99999999999999999999999999999998742 123899999999999999999999996
Q ss_pred CCCC---CceEEEEeeccCCCCC
Q 013031 371 GNWR---SGLRVRLMLRRGSKPA 390 (451)
Q Consensus 371 ~~~~---~gLrV~l~~~r~~k~~ 390 (451)
...+ ..|.|++++.+..|.+
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred eeeccCCCceEEEecccCCCchH
Confidence 5433 4699999999887754
No 43
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.23 E-value=8.4e-11 Score=109.62 Aligned_cols=79 Identities=37% Similarity=0.474 Sum_probs=71.3
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
.++|||+||+.++|+++|.++|+.||.|..|++..++.+++ .+|||||+|.+.++|.+|++.|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~-----------------~~g~~~v~f~~~~~~~~a~~~~ 177 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGK-----------------SRGFAFVEFESEESAEKAIEEL 177 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCc-----------------cCceEEEEecCHHHHHHHHHHc
Confidence 58999999999999999999999999999999987753222 3899999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 013031 368 NDEGNWRSGLRVRLML 383 (451)
Q Consensus 368 ng~~~~~~gLrV~l~~ 383 (451)
++..+.++.|+|....
T Consensus 178 ~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 178 NGKELEGRPLRVQKAQ 193 (306)
T ss_pred CCCeECCceeEeeccc
Confidence 9999999999999864
No 44
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.21 E-value=3.5e-11 Score=126.53 Aligned_cols=83 Identities=31% Similarity=0.422 Sum_probs=77.1
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Ln 368 (451)
++|||+|+|++.++++|..+|+.+|.|.++++.+|+.+|+ .|||+||||.+.|+|++|++.||
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~-----------------~~G~~f~~~~~~~~~~~a~~~lN 81 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGK-----------------PKGFGFCEFTDEETAERAIRNLN 81 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCC-----------------cCceeeEecCchhhHHHHHHhcC
Confidence 8999999999999999999999999999999999987655 29999999999999999999999
Q ss_pred CCCCCCCceEEEEeeccCCC
Q 013031 369 DEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 369 g~~~~~~gLrV~l~~~r~~k 388 (451)
+.++.++.|||.+......+
T Consensus 82 g~~~~gr~l~v~~~~~~~~~ 101 (435)
T KOG0108|consen 82 GAEFNGRKLRVNYASNRKNA 101 (435)
T ss_pred CcccCCceEEeecccccchh
Confidence 99999999999998876554
No 45
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=1.9e-11 Score=122.28 Aligned_cols=81 Identities=21% Similarity=0.210 Sum_probs=72.8
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..+.|+|.|||+...+.||+.+|++||+|.+|.|+... .+.|||+||+|++.+||++|-++
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE-------------------RGSKGFGFVTmen~~dadRARa~ 155 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE-------------------RGSKGFGFVTMENPADADRARAE 155 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc-------------------CCCCccceEEecChhhHHHHHHH
Confidence 45789999999999999999999999999999998632 23499999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccC
Q 013031 367 LNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~ 386 (451)
|+|..+.||.|.|+.+-.|.
T Consensus 156 LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 156 LHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred hhcceeeceEEEEeccchhh
Confidence 99999999999999887653
No 46
>PLN03213 repressor of silencing 3; Provisional
Probab=99.20 E-value=4.4e-11 Score=124.73 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=68.7
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCH--HHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV--ELAEKAI 364 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~--EdAekAv 364 (451)
...+|||+||.+++++++|+++|+.||.|..|.|++.. .||||||+|.+. +++.+||
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET---------------------GRGFAFVEMssdddaEeeKAI 67 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK---------------------GRSFAYIDFSPSSTNSLTKLF 67 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc---------------------CCceEEEEecCCcHHHHHHHH
Confidence 45689999999999999999999999999999997321 189999999987 7899999
Q ss_pred HHHcCCCCCCCceEEEEeec
Q 013031 365 AELNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~ 384 (451)
..||+..+.|+.|+|..+..
T Consensus 68 SaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 68 STYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred HHhcCCeecCceeEEeeccH
Confidence 99999999999999998753
No 47
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.20 E-value=6.3e-11 Score=115.31 Aligned_cols=76 Identities=13% Similarity=0.167 Sum_probs=66.6
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
...||||+||+.++|+++|++||+.||+|.+|+|++++. .++||||+|++.++|+.|+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e--------------------t~gfAfVtF~d~~aaetAll- 62 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE--------------------YACTAYVTFKDAYALETAVL- 62 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC--------------------cceEEEEEECCHHHHHHHHh-
Confidence 457999999999999999999999999999999987631 15799999999999999995
Q ss_pred HcCCCCCCCceEEEEee
Q 013031 367 LNDEGNWRSGLRVRLML 383 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~ 383 (451)
|||..+.++.|.|..+.
T Consensus 63 LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 63 LSGATIVDQRVCITRWG 79 (243)
T ss_pred cCCCeeCCceEEEEeCc
Confidence 99999988877777554
No 48
>smart00360 RRM RNA recognition motif.
Probab=99.19 E-value=8.6e-11 Score=88.57 Aligned_cols=70 Identities=37% Similarity=0.509 Sum_probs=58.7
Q ss_pred EcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCC
Q 013031 293 AENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGN 372 (451)
Q Consensus 293 V~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~ 372 (451)
|+||+.+++.++|+++|+.||.|..+.+...+.++ ..+|+|||+|.+.++|++|++.|++..+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~-----------------~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTG-----------------KSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCC-----------------CCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 57999999999999999999999999987543211 2378999999999999999999998777
Q ss_pred CCCceEE
Q 013031 373 WRSGLRV 379 (451)
Q Consensus 373 ~~~gLrV 379 (451)
.++.|+|
T Consensus 64 ~~~~~~v 70 (71)
T smart00360 64 DGRPLKV 70 (71)
T ss_pred CCcEEEe
Confidence 6666655
No 49
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.18 E-value=9.5e-11 Score=127.31 Aligned_cols=76 Identities=26% Similarity=0.324 Sum_probs=63.9
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++++++|+++|++||.|..|+|+++ .+++ ++|||||+|.+.|+|++||+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~-----------------sRGfaFV~F~~~e~A~~Ai~~ 118 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQ-----------------NRGYAFVTFCGKEEAKEAVKL 118 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCC-----------------ccceEEEEeCCHHHHHHHHHH
Confidence 4689999999999999999999999999999999877 2221 389999999999999999999
Q ss_pred HcCCCCC-CCceEEE
Q 013031 367 LNDEGNW-RSGLRVR 380 (451)
Q Consensus 367 Lng~~~~-~~gLrV~ 380 (451)
||+..+. ++-|.|+
T Consensus 119 lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 119 LNNYEIRPGRLLGVC 133 (578)
T ss_pred cCCCeecCCcccccc
Confidence 9987653 3334443
No 50
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.7e-11 Score=117.14 Aligned_cols=86 Identities=27% Similarity=0.339 Sum_probs=76.3
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
.+.|||||++|-+++|+.-|...|-.||.|+.|.|-.+..+. +.+||+||||+-.|||..||.
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesq-----------------kHRgFgFVefe~aEDAaaAiD 70 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQ-----------------KHRGFGFVEFEEAEDAAAAID 70 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcc-----------------cccceeEEEeeccchhHHHhh
Confidence 357999999999999999999999999999999986554321 248999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
+||+.+++++.|||.++..-..|
T Consensus 71 NMnesEL~GrtirVN~AkP~kik 93 (298)
T KOG0111|consen 71 NMNESELFGRTIRVNLAKPEKIK 93 (298)
T ss_pred cCchhhhcceeEEEeecCCcccc
Confidence 99999999999999999876655
No 51
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.18 E-value=4.2e-11 Score=111.63 Aligned_cols=103 Identities=18% Similarity=0.133 Sum_probs=82.2
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
+..||||+||+..++++-|.++|-..|.|.+|+|-+++.+. ..+|||||||.++|+|+-|++-
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~-----------------~~qGygF~Ef~~eedadYAiki 70 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQ-----------------KHQGYGFAEFRTEEDADYAIKI 70 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcc-----------------cccceeEEEEechhhhHHHHHH
Confidence 45699999999999999999999999999999997665432 2489999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccCCCCCCCCCCCCCCCCCCCCC
Q 013031 367 LNDEGNWRSGLRVRLMLRRGSKPAQVKGKKGPEGEWQCEE 406 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~~k~~~g~g~~g~~~~~~~~e 406 (451)
||.-.++++.|||..+.........|-.-.-++-+...||
T Consensus 71 ln~VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe 110 (203)
T KOG0131|consen 71 LNMVKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDE 110 (203)
T ss_pred HHHHHhcCceeEEEecccccccccccccccccccCcchhH
Confidence 9999999999999999854444333333333344334444
No 52
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.17 E-value=7.1e-11 Score=126.01 Aligned_cols=75 Identities=21% Similarity=0.185 Sum_probs=67.0
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
+|+|||+|||.++++++|+++|+.||.|.+|+|+.. |+||||||++.|+|++|++.|
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----------------------k~~afVef~~~e~A~~Ai~~~ 58 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----------------------KRQALVEFEDEESAKACVNFA 58 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----------------------CCEEEEEeCchHHHHHHHHHh
Confidence 689999999999999999999999999999998632 789999999999999999975
Q ss_pred --cCCCCCCCceEEEEeecc
Q 013031 368 --NDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 368 --ng~~~~~~gLrV~l~~~r 385 (451)
|+..++++.|+|.+...+
T Consensus 59 ~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 59 TSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred hcCCceEcCeEEEEEecCCc
Confidence 667788888999988643
No 53
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=5.4e-11 Score=114.64 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=66.3
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
....|||+||++++..|.|+++|++||+|....++.|+.++++ |||+||+|.+.|.|++|++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rs-----------------kGyGfVTf~d~~aa~rAc~d 73 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRS-----------------KGYGFVTFRDAEAATRACKD 73 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccc-----------------cceeeEEeecHHHHHHHhcC
Confidence 4568999999999999999999999999999999989876653 99999999999999999998
Q ss_pred HcCCCCCCCceEEEEee
Q 013031 367 LNDEGNWRSGLRVRLML 383 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~ 383 (451)
.|- .+.||.-.+.|+.
T Consensus 74 p~p-iIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 74 PNP-IIDGRKANCNLAS 89 (247)
T ss_pred CCC-cccccccccchhh
Confidence 775 3445544444443
No 54
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=2.3e-10 Score=118.35 Aligned_cols=80 Identities=28% Similarity=0.351 Sum_probs=69.0
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
-..+.|||+.||.|+.+++|.-+|++.|+|-.+||+.++.+|. +||||||+|.++|+|++||+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~-----------------nRGYAFVtf~~Ke~Aq~Aik 143 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGD-----------------NRGYAFVTFCTKEEAQEAIK 143 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCC-----------------CcceEEEEeecHHHHHHHHH
Confidence 4578999999999999999999999999999999998865433 59999999999999999999
Q ss_pred HHcCCCCC-CCceEEEEe
Q 013031 366 ELNDEGNW-RSGLRVRLM 382 (451)
Q Consensus 366 ~Lng~~~~-~~gLrV~l~ 382 (451)
+||+.++. ++-|+|++-
T Consensus 144 ~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 144 ELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred HhhCccccCCCEeEEEEe
Confidence 99998763 344666643
No 55
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=1.3e-10 Score=120.13 Aligned_cols=167 Identities=25% Similarity=0.295 Sum_probs=116.4
Q ss_pred ChHHHHHHhhccccc-----------cCCCc-------cccCH---HHHhhhccCCCCceecccccch-hhHHHhh----
Q 013031 194 NDESIQKVLNQVEYY-----------FSDLN-------LATTD---HLIRFILKDPEGYVPISTVASF-KKIKAII---- 247 (451)
Q Consensus 194 ~~e~~~kI~kQvEyY-----------FSD~N-------L~~D~---fL~~~i~kd~dG~VPi~~i~sF-kKmK~Lt---- 247 (451)
+.+..++.+++|.=| .|-.| ++|.+ -+++.|++-.+|-|.+.+..+- +|+|...
T Consensus 134 ~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFv 213 (506)
T KOG0117|consen 134 TKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFV 213 (506)
T ss_pred cHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEE
Confidence 566666777776655 33333 33321 2444467778899888887665 3333311
Q ss_pred --cCHHHHHHHhhc--CcceEEeecccccccCCCCcchhhhc-ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeC
Q 013031 248 --SSHSHLASVLRK--SSKLVVSEDGKKIKRQNPLTESDLEE-LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCL 322 (451)
Q Consensus 248 --~d~~~I~~ALr~--S~~LeVsedg~kVRR~~Pl~e~~~~e-~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~ 322 (451)
.+....+.|-++ +..++|....-.|...+|..+-+.+. .+-+.|||+||+.++|+|.|+++|+.||.|+.|..+
T Consensus 214 eYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~- 292 (506)
T KOG0117|consen 214 EYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP- 292 (506)
T ss_pred EeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc-
Confidence 112233333332 33577766666677777655433222 234689999999999999999999999999999764
Q ss_pred CCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeecc
Q 013031 323 PQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 323 p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~l~~~r 385 (451)
|.||||-|.+.++|.+|+++||+.++.+..|.|.|+..-
T Consensus 293 ------------------------rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 293 ------------------------RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred ------------------------cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 458999999999999999999999999999999998753
No 56
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.14 E-value=1.5e-10 Score=123.60 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=69.2
Q ss_pred cceEEEEcCCCC-cccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 287 ~~RTVyV~nLP~-d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
..++|||+||+. .+|+++|+++|+.||.|..|++++++ +|||||+|++.++|++|++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----------------------~g~afV~f~~~~~A~~Ai~ 331 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----------------------KETALIEMADPYQAQLALT 331 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----------------------CCEEEEEECCHHHHHHHHH
Confidence 457999999997 69999999999999999999986531 6899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 013031 366 ELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r 385 (451)
.||+..++++.|+|.+....
T Consensus 332 ~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 332 HLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred HhCCCEECCceEEEEEcccc
Confidence 99999999999999987543
No 57
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.12 E-value=3.5e-10 Score=86.11 Aligned_cols=73 Identities=36% Similarity=0.484 Sum_probs=62.6
Q ss_pred EEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 013031 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (451)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng 369 (451)
+|+|+|||.+++.++|+++|+.||.|..+.+...... ..+|+|||+|.+.++|..|++.+++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~------------------~~~~~~~v~f~s~~~a~~a~~~~~~ 62 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT------------------KSKGFAFVEFEDEEDAEKALEALNG 62 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC------------------CcceEEEEEECCHHHHHHHHHHhCC
Confidence 4899999999999999999999999999999754321 2378999999999999999999999
Q ss_pred CCCCCCceEEE
Q 013031 370 EGNWRSGLRVR 380 (451)
Q Consensus 370 ~~~~~~gLrV~ 380 (451)
..++++.+.|+
T Consensus 63 ~~~~~~~~~v~ 73 (74)
T cd00590 63 KELGGRPLRVE 73 (74)
T ss_pred CeECCeEEEEe
Confidence 87777666664
No 58
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=1.8e-10 Score=121.48 Aligned_cols=157 Identities=20% Similarity=0.215 Sum_probs=104.6
Q ss_pred hccccccCCCccccCHHHHhhhc---cCCCCceecccccchhhHHHhhcCHHHHHHHhhcCc----ceEEeecccc----
Q 013031 203 NQVEYYFSDLNLATTDHLIRFIL---KDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS----KLVVSEDGKK---- 271 (451)
Q Consensus 203 kQvEyYFSD~NL~~D~fL~~~i~---kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~----~LeVsedg~k---- 271 (451)
.|||-+||+.--.+-.|+...-. ..+-|||.+++...-+|-.+.+. .+. .|.|+....+
T Consensus 20 ~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~----------~~kf~Gr~l~v~~A~~R~r~e 89 (678)
T KOG0127|consen 20 EQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETE----------QSKFEGRILNVDPAKKRARSE 89 (678)
T ss_pred hHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhh----------cCcccceecccccccccccch
Confidence 47888999999888777765421 23557776666544443333222 221 1222211111
Q ss_pred ---------cccCCCCcchhhh--cccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCcccccc
Q 013031 272 ---------IKRQNPLTESDLE--ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSE 340 (451)
Q Consensus 272 ---------VRR~~Pl~e~~~~--e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~ 340 (451)
|+....-+..... ......|+|+|||+.+...+|+.+|+.||.|..|.|-+- .+
T Consensus 90 ~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k---------------~d 154 (678)
T KOG0127|consen 90 EVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK---------------KD 154 (678)
T ss_pred hcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC---------------CC
Confidence 1111100000111 222678999999999999999999999999999998321 12
Q ss_pred CcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeeccCC
Q 013031 341 GMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 341 g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
|. -+|||||.|.+..+|.+|++.+|+..+.++.|-|+|+..+..
T Consensus 155 gk---lcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 155 GK---LCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred CC---ccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 21 279999999999999999999999999999999999987644
No 59
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=9.7e-12 Score=115.86 Aligned_cols=83 Identities=22% Similarity=0.258 Sum_probs=76.3
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
.++.-|||+|||++.|+-+|..+|++||+|.+|.+++++.+|++ |||||.+|++.-+..-||.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKS-----------------KGFaFLcYEDQRSTILAVD 95 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKS-----------------KGFAFLCYEDQRSTILAVD 95 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcc-----------------cceEEEEecCccceEEEEe
Confidence 45678999999999999999999999999999999999877664 9999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 013031 366 ELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r 385 (451)
+|||..+.++.|||+-+...
T Consensus 96 N~NGiki~gRtirVDHv~~Y 115 (219)
T KOG0126|consen 96 NLNGIKILGRTIRVDHVSNY 115 (219)
T ss_pred ccCCceecceeEEeeecccc
Confidence 99999999999999977643
No 60
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.1e-10 Score=114.59 Aligned_cols=80 Identities=24% Similarity=0.299 Sum_probs=73.8
Q ss_pred EEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 013031 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (451)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng 369 (451)
-|||+.|..+++.|+|++.|.+||+|...||++|..++|+ |||+||.|-++++||+||..|||
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~Ks-----------------KGYgFVSf~~k~dAEnAI~~MnG 126 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKS-----------------KGYGFVSFPNKEDAENAIQQMNG 126 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcc-----------------cceeEEeccchHHHHHHHHHhCC
Confidence 5999999999999999999999999999999999776553 99999999999999999999999
Q ss_pred CCCCCCceEEEEeeccC
Q 013031 370 EGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 370 ~~~~~~gLrV~l~~~r~ 386 (451)
.=+.+|.||-.++-+|.
T Consensus 127 qWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 127 QWLGRRTIRTNWATRKP 143 (321)
T ss_pred eeeccceeeccccccCc
Confidence 98888999998887766
No 61
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=4.2e-10 Score=105.32 Aligned_cols=80 Identities=26% Similarity=0.263 Sum_probs=68.4
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
.+|+|||+|||.++.+.+|+++|.+||.|..|.+.... ..-+||||||++.-+|+.||..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--------------------g~ppfafVeFEd~RDAeDAiyg 64 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--------------------GPPPFAFVEFEDPRDAEDAIYG 64 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--------------------CCCCeeEEEecCccchhhhhhc
Confidence 57899999999999999999999999999999984321 1257999999999999999998
Q ss_pred HcCCCCCCCceEEEEeeccC
Q 013031 367 LNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~ 386 (451)
-++-.+.+--|||.+.....
T Consensus 65 RdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 65 RDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccccccCcceEEEEeccCCC
Confidence 88877777779999886543
No 62
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.06 E-value=2.9e-10 Score=107.91 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=71.2
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Ln 368 (451)
.+|-|.||-+.++.++|+.+|++||.|-.|-|-+++.+. ..+|||||-|.+..||++|++.|+
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr-----------------~sRgFaFVrf~~k~daedA~damD 76 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTR-----------------QSRGFAFVRFHDKRDAEDALDAMD 76 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccc-----------------cccceeEEEeeecchHHHHHHhhc
Confidence 479999999999999999999999999999997775432 138999999999999999999999
Q ss_pred CCCCCCCceEEEEeec
Q 013031 369 DEGNWRSGLRVRLMLR 384 (451)
Q Consensus 369 g~~~~~~gLrV~l~~~ 384 (451)
|..+.++.|+|.++.-
T Consensus 77 G~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 77 GAVLDGRELRVQMARY 92 (256)
T ss_pred ceeeccceeeehhhhc
Confidence 9999999999998853
No 63
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=3.8e-10 Score=110.69 Aligned_cols=70 Identities=23% Similarity=0.297 Sum_probs=62.7
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
.+.+||||+||..-+|+++|++.|+.||.|..||+..+ |||+||.|++.|.|.+||.
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----------------------qGYaFVrF~tkEaAahAIv 218 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----------------------QGYAFVRFETKEAAAHAIV 218 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----------------------cceEEEEecchhhHHHHHH
Confidence 45789999999999999999999999999999999543 8999999999999999999
Q ss_pred HHcCCCCCCCceE
Q 013031 366 ELNDEGNWRSGLR 378 (451)
Q Consensus 366 ~Lng~~~~~~gLr 378 (451)
.+|+.++.+.-+|
T Consensus 219 ~mNntei~G~~Vk 231 (321)
T KOG0148|consen 219 QMNNTEIGGQLVR 231 (321)
T ss_pred HhcCceeCceEEE
Confidence 9999987664333
No 64
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.05 E-value=6e-10 Score=84.33 Aligned_cols=56 Identities=41% Similarity=0.498 Sum_probs=48.3
Q ss_pred HHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEe
Q 013031 305 LMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (451)
Q Consensus 305 L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~l~ 382 (451)
|.++|++||+|+.|++...+ +++|||+|.+.++|++|++.||+..+.++.|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----------------------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----------------------RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----------------------TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----------------------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999996321 478999999999999999999999998888998864
No 65
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=3.4e-10 Score=110.56 Aligned_cols=119 Identities=19% Similarity=0.286 Sum_probs=91.5
Q ss_pred CHHHHHHHhhcCcceEEeecccccccCCCCcchhhhcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCC
Q 013031 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (451)
Q Consensus 249 d~~~I~~ALr~S~~LeVsedg~kVRR~~Pl~e~~~~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~ 328 (451)
+.++..+|+..-+.|.+.....+|.-..|-. +.++...|||.+||..+|..+|+.+|+.||.|..-||+.++.++-
T Consensus 92 ~p~DAe~AintlNGLrLQ~KTIKVSyARPSs----~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~ 167 (360)
T KOG0145|consen 92 RPKDAEKAINTLNGLRLQNKTIKVSYARPSS----DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGL 167 (360)
T ss_pred ChHHHHHHHhhhcceeeccceEEEEeccCCh----hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccce
Confidence 3456667777767777754433443333322 245667899999999999999999999999999999998876543
Q ss_pred CCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCC--CceEEEEeeccCCC
Q 013031 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWR--SGLRVRLMLRRGSK 388 (451)
Q Consensus 329 ~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~--~gLrV~l~~~r~~k 388 (451)
.||.+||.|+..++|+.||+.|||..--+ ..|.|++++....+
T Consensus 168 -----------------srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 168 -----------------SRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQK 212 (360)
T ss_pred -----------------ecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccc
Confidence 28999999999999999999999976544 46999999875443
No 66
>smart00361 RRM_1 RNA recognition motif.
Probab=98.98 E-value=1.3e-09 Score=86.58 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=50.0
Q ss_pred HHHHHHHHh----cCCceEEEE-EeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCc
Q 013031 302 HQNLMKIFS----AVGSVKTIR-TCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSG 376 (451)
Q Consensus 302 ~e~L~e~Fs----~fG~V~~Vr-i~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~g 376 (451)
+++|+++|+ +||.|.+|. |..++.+. ....+|||||+|++.++|.+|++.||+..+.++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~---------------~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGY---------------ENHKRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCC---------------CCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 578888898 999999995 65554320 0112899999999999999999999999888877
Q ss_pred eEE
Q 013031 377 LRV 379 (451)
Q Consensus 377 LrV 379 (451)
|++
T Consensus 67 l~~ 69 (70)
T smart00361 67 VKA 69 (70)
T ss_pred EEe
Confidence 765
No 67
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.95 E-value=1.3e-09 Score=115.86 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=60.0
Q ss_pred hcccceEEEEcCCCCcccHHHHHHHHhcCC------------ceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEE
Q 013031 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVG------------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAF 351 (451)
Q Consensus 284 ~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG------------~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AF 351 (451)
.....|+|||+|||.++|+++|+++|+.|+ .|..|.+. ..+||||
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~kg~af 227 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----------------------KEKNFAF 227 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----------------------CCCCEEE
Confidence 345679999999999999999999999862 33444432 1278999
Q ss_pred EEeCCHHHHHHHHHHHcCCCCCCCceEEEEe
Q 013031 352 VEYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (451)
Q Consensus 352 VEFet~EdAekAv~~Lng~~~~~~gLrV~l~ 382 (451)
|||.+.|+|.+||+ ||+..+.+..|+|...
T Consensus 228 VeF~~~e~A~~Al~-l~g~~~~g~~l~v~r~ 257 (509)
T TIGR01642 228 LEFRTVEEATFAMA-LDSIIYSNVFLKIRRP 257 (509)
T ss_pred EEeCCHHHHhhhhc-CCCeEeeCceeEecCc
Confidence 99999999999995 9998887777777543
No 68
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=1.8e-09 Score=111.49 Aligned_cols=86 Identities=20% Similarity=0.301 Sum_probs=70.2
Q ss_pred hhhcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHH
Q 013031 282 DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (451)
Q Consensus 282 ~~~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAe 361 (451)
+..+.+.-.+||+-+|...+|.||+++|++||.|..|.|++|+.++- .||||||.|.+.++|.
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~-----------------s~gcCFv~~~trk~a~ 90 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQ-----------------SKGCCFVKYYTRKEAD 90 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCc-----------------ccceEEEEeccHHHHH
Confidence 33444556799999999999999999999999999999999875432 3999999999999999
Q ss_pred HHHHHHcCCCCC-C--CceEEEEeec
Q 013031 362 KAIAELNDEGNW-R--SGLRVRLMLR 384 (451)
Q Consensus 362 kAv~~Lng~~~~-~--~gLrV~l~~~ 384 (451)
+|+..|.+.... | ..+.|+.++.
T Consensus 91 ~a~~Alhn~ktlpG~~~pvqvk~Ad~ 116 (510)
T KOG0144|consen 91 EAINALHNQKTLPGMHHPVQVKYADG 116 (510)
T ss_pred HHHHHhhcccccCCCCcceeecccch
Confidence 999999875432 2 2477777764
No 69
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=2.6e-09 Score=116.40 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=6.7
Q ss_pred HHHHHHHHHcCCC
Q 013031 359 LAEKAIAELNDEG 371 (451)
Q Consensus 359 dAekAv~~Lng~~ 371 (451)
....|++++...+
T Consensus 803 avt~ACEE~rkSe 815 (1102)
T KOG1924|consen 803 AVTAACEELRKSE 815 (1102)
T ss_pred HHHHHHHHHHhhh
Confidence 3445566655443
No 70
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=4.3e-09 Score=114.80 Aligned_cols=13 Identities=8% Similarity=-0.054 Sum_probs=5.4
Q ss_pred CCCCCCCccccCC
Q 013031 55 STQSKPQVQVQVQ 67 (451)
Q Consensus 55 ~~~~~~~~~~~~~ 67 (451)
|||||+||+|+.+
T Consensus 542 pppPppPPlpgga 554 (1102)
T KOG1924|consen 542 PPPPPPPPLPGGA 554 (1102)
T ss_pred CCCCCCCCCCCCC
Confidence 3333444444433
No 71
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.87 E-value=5.3e-09 Score=108.15 Aligned_cols=79 Identities=28% Similarity=0.305 Sum_probs=69.7
Q ss_pred cceEEEEcCCCCcccHHHHHHHHh-cCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs-~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
..|+|||.|||+|..+++|+++|. +.|+|+.|.++.|. ++| .+|||.|||+++|.++||++
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-----------~GK-------~rGcavVEFk~~E~~qKa~E 104 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-----------SGK-------ARGCAVVEFKDPENVQKALE 104 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-----------CCC-------cCCceEEEeeCHHHHHHHHH
Confidence 467899999999999999999996 68999999998774 223 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 013031 366 ELNDEGNWRSGLRVRLML 383 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~ 383 (451)
.||...+.++.|+|+-.-
T Consensus 105 ~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 105 KLNKYEVNGRELVVKEDH 122 (608)
T ss_pred HhhhccccCceEEEeccC
Confidence 999999999999988554
No 72
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.86 E-value=3.8e-09 Score=115.19 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=74.1
Q ss_pred hcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHH
Q 013031 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (451)
Q Consensus 284 ~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekA 363 (451)
-.+.+|||||++|+..+++++|..+|+.||+|.+|.|+-+ +|||||++....+|++|
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----------------------R~cAfI~M~~RqdA~ka 473 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----------------------RGCAFIKMVRRQDAEKA 473 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----------------------CceeEEEEeehhHHHHH
Confidence 3467899999999999999999999999999999998633 78999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeeccCCC
Q 013031 364 IAELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 364 v~~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
+..|++..+..+-|+|.++..+..|
T Consensus 474 lqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 474 LQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred HHHHhcccccceeeEEeeeccCCcc
Confidence 9999998888888999998876665
No 73
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=4.8e-09 Score=102.62 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=72.6
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
...|+|.-||..+|.|+|+.+|+..|+|+++.+++|+.+|-+ -||+||.|.+++||++||..|
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqS-----------------LGYGFVNYv~p~DAe~Aintl 103 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQS-----------------LGYGFVNYVRPKDAEKAINTL 103 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccc-----------------cccceeeecChHHHHHHHhhh
Confidence 346888889999999999999999999999999999765432 689999999999999999999
Q ss_pred cCCCCCCCceEEEEeecc
Q 013031 368 NDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 368 ng~~~~~~gLrV~l~~~r 385 (451)
||-++..+.|+|.++...
T Consensus 104 NGLrLQ~KTIKVSyARPS 121 (360)
T KOG0145|consen 104 NGLRLQNKTIKVSYARPS 121 (360)
T ss_pred cceeeccceEEEEeccCC
Confidence 999999999999998754
No 74
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=4.5e-09 Score=111.15 Aligned_cols=81 Identities=27% Similarity=0.302 Sum_probs=68.9
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
.+||||+||++|+|+|+|.+.|++||+|++++|+.++.++. .+|+|||-|.+..+|++||+..
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~-----------------skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGH-----------------SKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCC-----------------cccceEEEeccHHHHHHHHHhc
Confidence 48999999999999999999999999999999998876543 2899999999999999999976
Q ss_pred c-----C-CCCCCCceEEEEeecc
Q 013031 368 N-----D-EGNWRSGLRVRLMLRR 385 (451)
Q Consensus 368 n-----g-~~~~~~gLrV~l~~~r 385 (451)
. + ..+.++-|+|.++..|
T Consensus 355 spa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 355 SPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred CccCCCceEEEeccEEeeeeccch
Confidence 2 1 2345677888888765
No 75
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=9.9e-09 Score=106.55 Aligned_cols=111 Identities=26% Similarity=0.308 Sum_probs=84.6
Q ss_pred CHHHHHHHhhcCcceEEeecccccccCCCCcchhhhcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCC
Q 013031 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (451)
Q Consensus 249 d~~~I~~ALr~S~~LeVsedg~kVRR~~Pl~e~~~~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~ 328 (451)
+..+..+||.+.+.-.+ .|+.||--.. ..+...|||+||+++++..+|.++|+.||+|.++++..+..
T Consensus 46 ~~~da~~A~~~~n~~~~--~~~~~rim~s-------~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~--- 113 (369)
T KOG0123|consen 46 QPADAERALDTMNFDVL--KGKPIRIMWS-------QRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN--- 113 (369)
T ss_pred CHHHHHHHHHHcCCccc--CCcEEEeehh-------ccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC---
Confidence 45666777776553333 2333332211 11233499999999999999999999999999999975531
Q ss_pred CCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeeccCCC
Q 013031 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 329 ~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
| .||| ||+|+++++|++|++.|||..+.+..|.|.+...+..+
T Consensus 114 ------------g----~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 114 ------------G----SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred ------------C----ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 1 3999 99999999999999999999999999999888776554
No 76
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.81 E-value=8.2e-09 Score=109.29 Aligned_cols=80 Identities=21% Similarity=0.260 Sum_probs=71.5
Q ss_pred EEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCC
Q 013031 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (451)
Q Consensus 291 VyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~ 370 (451)
|||+||.+++++++|+.+|+.||+|+.|.+.++-.+|. .|||+||+|.+.|+|.+|++.||+.
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~-----------------skgfGfi~f~~~~~ar~a~e~lngf 343 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGR-----------------SKGFGFITFVNKEDARKALEQLNGF 343 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeecccccccc-----------------ccCcceEEEecHHHHHHHHHHhccc
Confidence 99999999999999999999999999999876632222 3999999999999999999999999
Q ss_pred CCCCCceEEEEeeccCC
Q 013031 371 GNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 371 ~~~~~gLrV~l~~~r~~ 387 (451)
++.|+-|+|.++..+..
T Consensus 344 elAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 344 ELAGRLIKVSVVTERVD 360 (549)
T ss_pred eecCceEEEEEeeeecc
Confidence 99999999998876554
No 77
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=3.8e-09 Score=107.25 Aligned_cols=77 Identities=23% Similarity=0.313 Sum_probs=68.9
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
-|.|||+.+.+++.++.|+..|..||.|++|.|.-|..++ ++||||||||+-.|.|+-|++.|
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~-----------------kHKgFAFVEYEvPEaAqLAlEqM 175 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATG-----------------KHKGFAFVEYEVPEAAQLALEQM 175 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccc-----------------cccceEEEEEeCcHHHHHHHHHh
Confidence 3679999999999999999999999999999996654332 24999999999999999999999
Q ss_pred cCCCCCCCceEEEE
Q 013031 368 NDEGNWRSGLRVRL 381 (451)
Q Consensus 368 ng~~~~~~gLrV~l 381 (451)
|+..+.++.|+|..
T Consensus 176 Ng~mlGGRNiKVgr 189 (544)
T KOG0124|consen 176 NGQMLGGRNIKVGR 189 (544)
T ss_pred ccccccCccccccC
Confidence 99999999999873
No 78
>KOG2590 consensus RNA-binding protein LARP/SRO9 and related La domain proteins [Posttranslational modification, protein turnover, chaperones; Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=6.4e-09 Score=109.49 Aligned_cols=70 Identities=26% Similarity=0.423 Sum_probs=60.0
Q ss_pred HHHHHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcceEEeeccccccc
Q 013031 196 ESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (451)
Q Consensus 196 e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~LeVsedg~kVRR 274 (451)
...+.|.+|||||||.+||++|.|+++ |||+|.+|++|+||..|+.|+++|.+||+++-.|++..+ .+||
T Consensus 299 ~~~~~~~~~ie~~FSeE~~~~d~~n~~-------k~~~l~~ia~F~r~ad~s~d~nli~~alr~s~ive~~~d--~~~r 368 (448)
T KOG2590|consen 299 NVIAFIQEPIEFYFSEENLQRDRFNRE-------KFVPLRVIAKFKRVADLSSDINLILAALRNSLIVEETGD--LERR 368 (448)
T ss_pred ccccccccccccccchHHHhhhhhhhc-------ccchhhhhhhhhhhhhcccCHHHHHHHHhhhhhhhccch--hhhc
Confidence 345788999999999999999999875 788999999999999999999999999999977666433 4444
No 79
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=2.6e-08 Score=100.79 Aligned_cols=79 Identities=24% Similarity=0.316 Sum_probs=67.0
Q ss_pred hcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHH
Q 013031 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (451)
Q Consensus 284 ~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekA 363 (451)
++...+||||+||-..+++.+|++.|.+||+|++|++... ++||||+|.+.+.|++|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----------------------~~CAFv~ftTR~aAE~A 280 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----------------------KGCAFVTFTTREAAEKA 280 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----------------------cccceeeehhhHHHHHH
Confidence 4456789999999999999999999999999999998531 77999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeeccC
Q 013031 364 IAELNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 364 v~~Lng~~~~~~gLrV~l~~~r~ 386 (451)
.+++-+ .+..+|.||.+.+.+.
T Consensus 281 ae~~~n-~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 281 AEKSFN-KLVINGFRLKIKWGRP 302 (377)
T ss_pred HHhhcc-eeeecceEEEEEeCCC
Confidence 998766 4445677777777665
No 80
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=3.6e-09 Score=108.51 Aligned_cols=61 Identities=23% Similarity=0.453 Sum_probs=55.5
Q ss_pred HHHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcC
Q 013031 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS 260 (451)
Q Consensus 198 ~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S 260 (451)
+..+++|||||||.+||+.|.||++++. .+||||+++|..|.|.+.+..|.++|..||+.+
T Consensus 271 I~a~k~QiEyYFseenl~~d~~lrkk~~--kaGf~plsfi~kf~Rn~Sf~gd~nLilaa~ke~ 331 (438)
T COG5193 271 IMAKKEQIEYYFSEENLKSDEFLRKKFK--KAGFIPLSFIGKFYRNLSFGGDKNLILAAMKEV 331 (438)
T ss_pred hhhHHhhhHhhhhHHhhhhhhHHHhhhh--hcccccHhhhhhhhhccccCCchhhhHHHHHHH
Confidence 4677789999999999999999999964 469999999999999999999999999998865
No 81
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.69 E-value=5.5e-08 Score=93.53 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=70.1
Q ss_pred ceEEEEcCCCCcccHHHHHH----HHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMK----IFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e----~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekA 363 (451)
..||||.||++.+..++|++ +|+.||+|..|..++.. | -+|-|||.|++.+.|-.|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~-------------K-------mRGQA~VvFk~~~~As~A 68 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP-------------K-------MRGQAFVVFKETEAASAA 68 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC-------------C-------ccCceEEEecChhHHHHH
Confidence 34999999999999999888 99999999999987432 1 278899999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeeccC
Q 013031 364 IAELNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 364 v~~Lng~~~~~~gLrV~l~~~r~ 386 (451)
++.|+|..+.++.|||.++..+.
T Consensus 69 ~r~l~gfpFygK~mriqyA~s~s 91 (221)
T KOG4206|consen 69 LRALQGFPFYGKPMRIQYAKSDS 91 (221)
T ss_pred HHHhcCCcccCchhheecccCcc
Confidence 99999999999999999987654
No 82
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.67 E-value=5e-08 Score=91.33 Aligned_cols=84 Identities=21% Similarity=0.303 Sum_probs=70.5
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEE-EEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTI-RTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~V-ri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
...|||+||..++++.-|-+.|+.||.+... .+.++.+++. .+||+||.|++.|.+.+|+..
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~-----------------~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGN-----------------PKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCC-----------------CCCCeEEechhHHHHHHHHHH
Confidence 3579999999999999999999999987653 4444443322 288999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccCCC
Q 013031 367 LNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~~k 388 (451)
||+..+..+.+.|.++.++..|
T Consensus 159 ~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred hccchhcCCceEEEEEEecCCC
Confidence 9999999999999999865554
No 83
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.7e-08 Score=99.86 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=70.8
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
....|||..|..-+|.|+|+-||+.||+|.++.+++++.+|.. -.||||||++.|++++|+-.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgds-----------------LqyaFiEFen~escE~AyFK 300 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDS-----------------LQYAFIEFENKESCEQAYFK 300 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccch-----------------hheeeeeecchhhHHHHHhh
Confidence 3568999999999999999999999999999999999765542 35899999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 013031 367 LNDEGNWRSGLRVRLML 383 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~ 383 (451)
|++..+..+-|.|.+-.
T Consensus 301 MdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 301 MDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred hcceeeccceEEeehhh
Confidence 99988888889888654
No 84
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.55 E-value=4.2e-08 Score=99.52 Aligned_cols=151 Identities=17% Similarity=0.281 Sum_probs=98.1
Q ss_pred ccccccCCCccccCHHHHhhhc---cCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcceEEeecccccccCCCCcc
Q 013031 204 QVEYYFSDLNLATTDHLIRFIL---KDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTE 280 (451)
Q Consensus 204 QvEyYFSD~NL~~D~fL~~~i~---kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~LeVsedg~kVRR~~Pl~e 280 (451)
.|.+||+..-..+|..+++-.. ....|||.++.-. .+.++|.... +.| ||+.|.-+..+++
T Consensus 22 ~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~-------------~v~~vl~~~~-h~~--dgr~ve~k~av~r 85 (311)
T KOG4205|consen 22 SLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPE-------------GVDAVLNART-HKL--DGRSVEPKRAVSR 85 (311)
T ss_pred HHHHHhcccCceeeEEEeccCCCCCcccccceecCCCc-------------chheeecccc-ccc--CCccccceeccCc
Confidence 3448998888888777665321 2244555544322 2223333221 111 3333333322222
Q ss_pred hhhh----cccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCC
Q 013031 281 SDLE----ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (451)
Q Consensus 281 ~~~~----e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet 356 (451)
.+.. ....+.|||++|+.++++++|++.|++||.|..+-+.++..+.+ .+||+||+|++
T Consensus 86 ~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~-----------------~rgFgfv~~~~ 148 (311)
T KOG4205|consen 86 EDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSR-----------------PRGFGFVTFDS 148 (311)
T ss_pred ccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccc-----------------cccceeeEecc
Confidence 2111 12356899999999999999999999999999999988865322 38999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEeeccCCC
Q 013031 357 VELAEKAIAELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 357 ~EdAekAv~~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
++.+++++. ..-..+.++.+.|+.+..+...
T Consensus 149 e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 149 EDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ccccceecc-cceeeecCceeeEeeccchhhc
Confidence 999998876 4555667777888888776543
No 85
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=1.4e-07 Score=97.93 Aligned_cols=141 Identities=25% Similarity=0.265 Sum_probs=100.8
Q ss_pred hhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcceEEeecccccccCCCCcchhhhcccceEEEEcCCCCcccH
Q 013031 223 FILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCH 302 (451)
Q Consensus 223 ~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~LeVsedg~kVRR~~Pl~e~~~~e~~~RTVyV~nLP~d~t~ 302 (451)
++..+.+| +.-. +..|..-+...+.++.+...|-....|.|..--.+-.|..++.+ . ......+||+++..+++.
T Consensus 107 kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~-~--~~~~t~v~vk~~~~~~~~ 181 (369)
T KOG0123|consen 107 KVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE-Y--KKRFTNVYVKNLEEDSTD 181 (369)
T ss_pred EEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc-h--hhhhhhhheeccccccch
Confidence 36677788 4444 77787666665555555555555556666433333333333333 1 223458999999999999
Q ss_pred HHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEe
Q 013031 303 QNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (451)
Q Consensus 303 e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~l~ 382 (451)
+.|.++|+.||.|.++.++.+.. ..++||+||+|++.|+|++|++.|++....+.-+.|..+
T Consensus 182 ~~l~~~f~~~g~i~s~~v~~~~~------------------g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~a 243 (369)
T KOG0123|consen 182 EELKDLFSAYGSITSVAVMRDSI------------------GKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRA 243 (369)
T ss_pred HHHHHhhcccCcceEEEEeecCC------------------CCCCCccceeecChhHHHHHHHhccCCcCCccceeeccc
Confidence 99999999999999999975532 113899999999999999999999998887777777766
Q ss_pred eccC
Q 013031 383 LRRG 386 (451)
Q Consensus 383 ~~r~ 386 (451)
.++.
T Consensus 244 qkk~ 247 (369)
T KOG0123|consen 244 QKKS 247 (369)
T ss_pred ccch
Confidence 6543
No 86
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.52 E-value=2.6e-07 Score=88.02 Aligned_cols=81 Identities=25% Similarity=0.365 Sum_probs=67.8
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcC-CceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~f-G~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
.--+||..+|..+.+.+|..+|..| |.|..+|+-|.+.+| ..||||||||+++|.|+-|.+.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTG-----------------NSKgYAFVEFEs~eVA~IaAET 111 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTG-----------------NSKGYAFVEFESEEVAKIAAET 111 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccC-----------------CcCceEEEEeccHHHHHHHHHH
Confidence 4468999999999999999999998 778888885554333 2399999999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 013031 367 LNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r 385 (451)
||+-.+.+.=|.+.++-..
T Consensus 112 MNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 112 MNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred hhhhhhhhheeeeEEeCch
Confidence 9998888887888887654
No 87
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.51 E-value=1e-07 Score=94.69 Aligned_cols=71 Identities=25% Similarity=0.284 Sum_probs=65.8
Q ss_pred EEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 013031 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (451)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng 369 (451)
.|||+|||.++++.+|+.+|++||+|..+.|+ |.|+||-.|++..|+.||.+|++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-------------------------KNYgFVHiEdktaaedairNLhg 58 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV-------------------------KNYGFVHIEDKTAAEDAIRNLHG 58 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee-------------------------cccceEEeecccccHHHHhhccc
Confidence 58999999999999999999999999999996 67999999999999999999999
Q ss_pred CCCCCCceEEEEeecc
Q 013031 370 EGNWRSGLRVRLMLRR 385 (451)
Q Consensus 370 ~~~~~~gLrV~l~~~r 385 (451)
-++.+..|.|.....|
T Consensus 59 YtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 59 YTLHGVNINVEASKSK 74 (346)
T ss_pred ceecceEEEEEecccc
Confidence 9999988998877655
No 88
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.50 E-value=1.9e-07 Score=96.85 Aligned_cols=75 Identities=27% Similarity=0.230 Sum_probs=65.8
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
.+.++|||+|||+++|++.|++-|..||.|..+.|.... | .|| .|.|.+.|+|++|++
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~G-------------k-------skG--VVrF~s~edAEra~a 591 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENG-------------K-------SKG--VVRFFSPEDAERACA 591 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhccC-------------C-------ccc--eEEecCHHHHHHHHH
Confidence 357899999999999999999999999999999885321 1 144 899999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 013031 366 ELNDEGNWRSGLRVRLM 382 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~ 382 (451)
.||+.++.++.|+|+++
T Consensus 592 ~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 592 LMNGSRLDGRNIKVTYF 608 (608)
T ss_pred HhccCcccCceeeeeeC
Confidence 99999999999999874
No 89
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.49 E-value=1.3e-07 Score=94.04 Aligned_cols=74 Identities=26% Similarity=0.263 Sum_probs=68.4
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
-+.+|+|+||...++.++|++.|++||.|....|. |+|+||-|+-.|+|..|++.
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------------------------kdy~fvh~d~~eda~~air~ 131 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------------------------KDYAFVHFDRAEDAVEAIRG 131 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeee-------------------------cceeEEEEeeccchHHHHhc
Confidence 35689999999999999999999999999999885 77999999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 013031 367 LNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r 385 (451)
||+.++.++.|+|.+-..|
T Consensus 132 l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 132 LDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred ccccccccceeeeeeeccc
Confidence 9999999999999987655
No 90
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=4e-07 Score=99.06 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=68.1
Q ss_pred EEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 013031 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (451)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng 369 (451)
+|||+||++++|.++|+..|..+|.|.+|+|..-++. + .+ +...|||||||.+.|+|+.|++.|+|
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~--------~-~k-----~lSmGfgFVEF~~~e~A~~a~k~lqg 582 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDP--------A-NK-----YLSMGFGFVEFAKPESAQAALKALQG 582 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccc--------c-cc-----ccccceeEEEecCHHHHHHHHHHhcC
Confidence 3999999999999999999999999999998543210 1 01 22479999999999999999999999
Q ss_pred CCCCCCceEEEEee
Q 013031 370 EGNWRSGLRVRLML 383 (451)
Q Consensus 370 ~~~~~~gLrV~l~~ 383 (451)
..+.+..|.|++..
T Consensus 583 tvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 583 TVLDGHKLELKISE 596 (725)
T ss_pred ceecCceEEEEecc
Confidence 99999889988887
No 91
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.46 E-value=3.9e-07 Score=92.86 Aligned_cols=111 Identities=18% Similarity=0.203 Sum_probs=82.5
Q ss_pred HHHHhhcCcceEEeecccccccCCCCcc------hhh-hcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCC
Q 013031 253 LASVLRKSSKLVVSEDGKKIKRQNPLTE------SDL-EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQT 325 (451)
Q Consensus 253 I~~ALr~S~~LeVsedg~kVRR~~Pl~e------~~~-~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~ 325 (451)
..-||+..+..-+...+.+|.|-.-++. ... +......|||..+..|.+++||+.+|+.||+|.++.+.+..+
T Consensus 168 AqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt 247 (544)
T KOG0124|consen 168 AQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT 247 (544)
T ss_pred HHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCC
Confidence 3445665555555555556666543332 111 223456899999999999999999999999999999976543
Q ss_pred CCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEE
Q 013031 326 SGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVR 380 (451)
Q Consensus 326 ~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~ 380 (451)
. .++|||+||||++..+...||..||-..+.+.=|||-
T Consensus 248 ~-----------------~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 248 G-----------------RGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 285 (544)
T ss_pred C-----------------CCccceeeEEeccccchHHHhhhcchhhcccceEecc
Confidence 1 1249999999999999999999999888777767775
No 92
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.45 E-value=1.9e-07 Score=91.85 Aligned_cols=85 Identities=19% Similarity=0.303 Sum_probs=73.6
Q ss_pred hcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHH
Q 013031 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (451)
Q Consensus 284 ~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekA 363 (451)
+.-+.|.|||.-||.+..+.+|...|-.||.|.+.++.-|+-++- .|+|+||.|++..+|+.|
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQ-----------------SKCFGFVSfDNp~SaQaA 343 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQ-----------------SKCFGFVSFDNPASAQAA 343 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhcccc-----------------ccceeeEecCCchhHHHH
Confidence 345689999999999999999999999999999999887764432 289999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeecc
Q 013031 364 IAELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 364 v~~Lng~~~~~~gLrV~l~~~r 385 (451)
|..|||..+.-+.|||.+-..|
T Consensus 344 IqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 344 IQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred HHHhcchhhhhhhhhhhhcCcc
Confidence 9999999887778888876543
No 93
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.41 E-value=6.9e-07 Score=93.99 Aligned_cols=75 Identities=23% Similarity=0.275 Sum_probs=56.5
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
..+|||+|||.+++.++|+++|+.||.|+..+|..-. |.. ++.+|+||+|++.++++.||..-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~----------~~~-------~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS----------PGG-------KNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEec----------cCC-------CcCceEEEEEeecchhhhhhhcC
Confidence 3469999999999999999999999999999884311 101 12389999999999999999864
Q ss_pred cCCCCCCCceEEE
Q 013031 368 NDEGNWRSGLRVR 380 (451)
Q Consensus 368 ng~~~~~~gLrV~ 380 (451)
-..+.++.|.|.
T Consensus 351 -p~~ig~~kl~Ve 362 (419)
T KOG0116|consen 351 -PLEIGGRKLNVE 362 (419)
T ss_pred -ccccCCeeEEEE
Confidence 333334444444
No 94
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.36 E-value=5.2e-07 Score=88.90 Aligned_cols=84 Identities=19% Similarity=0.203 Sum_probs=70.1
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
.+.|.|||+-|...-.+||++.+|..||.|+.+.+++- .+...||||||.|.+--||+.||.
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg------------------~dg~sKGCAFVKf~s~~eAqaAI~ 78 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG------------------PDGNSKGCAFVKFSSHAEAQAAIN 78 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC------------------CCCCCCCceEEEeccchHHHHHHH
Confidence 36789999999999999999999999999999998753 223349999999999999999999
Q ss_pred HHcCCCCCC---CceEEEEeeccCC
Q 013031 366 ELNDEGNWR---SGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~~~~---~gLrV~l~~~r~~ 387 (451)
.|.+....- ..|-|++++....
T Consensus 79 aLHgSqTmpGASSSLVVK~ADTdkE 103 (371)
T KOG0146|consen 79 ALHGSQTMPGASSSLVVKFADTDKE 103 (371)
T ss_pred HhcccccCCCCccceEEEeccchHH
Confidence 999865433 3588888876544
No 95
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.34 E-value=1.1e-06 Score=86.13 Aligned_cols=86 Identities=21% Similarity=0.190 Sum_probs=74.8
Q ss_pred hhcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHH
Q 013031 283 LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (451)
Q Consensus 283 ~~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAek 362 (451)
.++++.+.|||+|+.+.+|.++++..|+.||.|..|.|..++..+. .|||+||+|.+.+.+++
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~-----------------~k~~~yvef~~~~~~~~ 158 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGH-----------------PKGFAYVEFSSYELVEE 158 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCC-----------------cceeEEEecccHhhhHH
Confidence 4567889999999999999999999999999999999876654221 38999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeeccC
Q 013031 363 AIAELNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 363 Av~~Lng~~~~~~gLrV~l~~~r~ 386 (451)
|++ ||+..+-++.+.|.....+.
T Consensus 159 ay~-l~gs~i~~~~i~vt~~r~~~ 181 (231)
T KOG4209|consen 159 AYK-LDGSEIPGPAIEVTLKRTNV 181 (231)
T ss_pred Hhh-cCCcccccccceeeeeeeec
Confidence 999 99999999889888877653
No 96
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.28 E-value=2.3e-06 Score=93.35 Aligned_cols=80 Identities=19% Similarity=0.297 Sum_probs=67.6
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
...|.|+|||+..+..+++++|..||.|++|||..- .+ ....+|||||+|-+..+|.+|++.|
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK--~~---------------k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK--IG---------------KGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchh--hc---------------chhhccceeeeccCcHHHHHHHHhh
Confidence 347999999999999999999999999999998321 11 1234899999999999999999999
Q ss_pred cCCCCCCCceEEEEeec
Q 013031 368 NDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 368 ng~~~~~~gLrV~l~~~ 384 (451)
.+.-+.|+-|-+.++..
T Consensus 676 ~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cccceechhhheehhcc
Confidence 98888888887777653
No 97
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.27 E-value=7.9e-07 Score=85.89 Aligned_cols=68 Identities=21% Similarity=0.270 Sum_probs=60.0
Q ss_pred EEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 013031 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (451)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng 369 (451)
.|||++|++.+.+.+|++||.+||.|..|.|. .||+||+|++.-+|+.||..||+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------------------------~gf~fv~fed~rda~Dav~~l~~ 57 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-------------------------NGFGFVEFEDPRDADDAVHDLDG 57 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-------------------------cccceeccCchhhhhcccchhcC
Confidence 58999999999999999999999999999883 67899999999999999999999
Q ss_pred CCCCCCceEEEEe
Q 013031 370 EGNWRSGLRVRLM 382 (451)
Q Consensus 370 ~~~~~~gLrV~l~ 382 (451)
..+.+..+.|.++
T Consensus 58 ~~l~~e~~vve~~ 70 (216)
T KOG0106|consen 58 KELCGERLVVEHA 70 (216)
T ss_pred ceecceeeeeecc
Confidence 9887755444443
No 98
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=5.9e-07 Score=95.62 Aligned_cols=72 Identities=28% Similarity=0.438 Sum_probs=63.6
Q ss_pred cccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 285 e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
+...|+|+|-|||..++.++|+.+|+.||+|+.||+-.- .+|.+||||-+.-+|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----------------------~~~~~~v~FyDvR~A~~Al 129 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----------------------KRGIVFVEFYDVRDAERAL 129 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----------------------cCceEEEEEeehHhHHHHH
Confidence 557899999999999999999999999999999886321 1788999999999999999
Q ss_pred HHHcCCCCCCCceE
Q 013031 365 AELNDEGNWRSGLR 378 (451)
Q Consensus 365 ~~Lng~~~~~~gLr 378 (451)
++||..++.++.|+
T Consensus 130 k~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 130 KALNRREIAGKRIK 143 (549)
T ss_pred HHHHHHHhhhhhhc
Confidence 99999888777665
No 99
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.24 E-value=4e-06 Score=82.49 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=69.3
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
...+|+|.||++.++.++|+++|..||.++.+-+-+++. +. ..|+|=|.|+..+||++||+.
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-----------G~-------s~Gta~v~~~r~~DA~~avk~ 143 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-----------GR-------SLGTADVSFNRRDDAERAVKK 143 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-----------CC-------CCccceeeecchHhHHHHHHH
Confidence 345899999999999999999999999999999876642 11 268899999999999999999
Q ss_pred HcCCCCCCCceEEEEeec
Q 013031 367 LNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~ 384 (451)
+|+..+.++.|++.++..
T Consensus 144 ~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 144 YNGVALDGRPMKIEIISS 161 (243)
T ss_pred hcCcccCCceeeeEEecC
Confidence 999888888888887764
No 100
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.21 E-value=6.7e-06 Score=87.84 Aligned_cols=80 Identities=20% Similarity=0.202 Sum_probs=68.1
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
.|.|+|.+|...+.-.+|+.||++||+|.-..++... |+ . +.++|+||++.+.++|.+||+.|
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNa----------Rs---P----GaRCYGfVTMSts~eAtkCI~hL 467 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNA----------RS---P----GARCYGFVTMSTSAEATKCIEHL 467 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecC----------CC---C----CcceeEEEEecchHHHHHHHHHh
Confidence 6789999999999999999999999999888876431 11 1 23889999999999999999999
Q ss_pred cCCCCCCCceEEEEeec
Q 013031 368 NDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 368 ng~~~~~~gLrV~l~~~ 384 (451)
...++.++-|.|..+..
T Consensus 468 HrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 468 HRTELHGRMISVEKAKN 484 (940)
T ss_pred hhhhhcceeeeeeeccc
Confidence 99999998888886653
No 101
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.14 E-value=1.1e-06 Score=84.62 Aligned_cols=79 Identities=16% Similarity=0.117 Sum_probs=68.4
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
.|||||.||-..+++|-|.++|-.-|.|..|.|...++ ...| ||||+|+++-...-|++.|
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d------------------~~~k-Fa~v~f~~E~sv~~a~~L~ 69 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD------------------QEQK-FAYVFFPNENSVQLAGQLE 69 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc------------------CCCc-eeeeecccccchhhhhhhc
Confidence 58999999999999999999999999999998854332 1125 8999999999999999999
Q ss_pred cCCCCCCCceEEEEeecc
Q 013031 368 NDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 368 ng~~~~~~gLrV~l~~~r 385 (451)
||..+.++.|+|.+.+..
T Consensus 70 ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 70 NGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred ccchhccchhhcccccCC
Confidence 999999999988876643
No 102
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.95 E-value=2.3e-05 Score=79.71 Aligned_cols=90 Identities=21% Similarity=0.150 Sum_probs=66.1
Q ss_pred hcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHH
Q 013031 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (451)
Q Consensus 284 ~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekA 363 (451)
+......|||.|||.|+|.+++.++|++||-|.. +..+++- |-+-+.......||-|.|+|-..|+.+-|
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~-----d~~t~ep-----k~KlYrd~~G~lKGDaLc~y~K~ESVeLA 199 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMR-----DPQTGEP-----KVKLYRDNQGKLKGDALCCYIKRESVELA 199 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEec-----cCCCCCe-----eEEEEecCCCCccCceEEEeecccHHHHH
Confidence 3444567999999999999999999999997632 2111110 11111112233489999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEee
Q 013031 364 IAELNDEGNWRSGLRVRLML 383 (451)
Q Consensus 364 v~~Lng~~~~~~gLrV~l~~ 383 (451)
++-|++..+.+..|+|..+.
T Consensus 200 ~~ilDe~~~rg~~~rVerAk 219 (382)
T KOG1548|consen 200 IKILDEDELRGKKLRVERAK 219 (382)
T ss_pred HHHhCcccccCcEEEEehhh
Confidence 99999999888888888664
No 103
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.90 E-value=1.3e-05 Score=81.67 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=54.7
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
+.++|||++|.+++++|.|++.|+.||+|..+.+.+++.+++ .+||+||+|++.+....++..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~r-----------------srgFgfv~f~~~~~v~~vl~~ 67 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGR-----------------SRGFGFVTFATPEGVDAVLNA 67 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCC-----------------cccccceecCCCcchheeecc
Confidence 578999999999999999999999999999999988865432 189999999999888777654
No 104
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.80 E-value=0.00012 Score=71.06 Aligned_cols=81 Identities=20% Similarity=0.195 Sum_probs=61.4
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
-|||||.|||.|+.--+|-.+|..|---+...|.+. ++ .++ -.|.+|||+|.+..+|+.|+.+|
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~T---sk-------~~~------~~~pvaFatF~s~q~A~aamnaL 97 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYT---SK-------GDQ------VCKPVAFATFTSHQFALAAMNAL 97 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeec---cC-------CCc------cccceEEEEecchHHHHHHHHHh
Confidence 589999999999999999999998754444444221 11 111 12679999999999999999999
Q ss_pred cCCCCCC---CceEEEEeec
Q 013031 368 NDEGNWR---SGLRVRLMLR 384 (451)
Q Consensus 368 ng~~~~~---~gLrV~l~~~ 384 (451)
||.++.- ..|+++++..
T Consensus 98 NGvrFDpE~~stLhiElAKS 117 (284)
T KOG1457|consen 98 NGVRFDPETGSTLHIELAKS 117 (284)
T ss_pred cCeeeccccCceeEeeehhc
Confidence 9977643 4588888753
No 105
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.79 E-value=4.1e-05 Score=75.29 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=65.3
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
+.-.||.+.|.-+++++-|.+.|++|-.-...++++++.+ +|+ |||+||.|.+.+|+..|+++
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRT----------gKS-------kgygfVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRT----------GKS-------KGYGFVSFRDPADYVRAMRE 251 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccc----------ccc-------ccceeeeecCHHHHHHHHHh
Confidence 3456999999999999999999999988777777776533 332 89999999999999999999
Q ss_pred HcCCCCCCCceEEE
Q 013031 367 LNDEGNWRSGLRVR 380 (451)
Q Consensus 367 Lng~~~~~~gLrV~ 380 (451)
||+...+.+.|++|
T Consensus 252 m~gkyVgsrpiklR 265 (290)
T KOG0226|consen 252 MNGKYVGSRPIKLR 265 (290)
T ss_pred hcccccccchhHhh
Confidence 99998887777766
No 106
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.75 E-value=9e-05 Score=64.14 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=43.9
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Ln 368 (451)
+.|.+.|+..+++.++|++.|+.||.|..|.+.+. ...|||-|.+.++|++|++.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----------------------~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----------------------DTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------------------------SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----------------------CCEEEEEECCcchHHHHHHHHH
Confidence 47889999999999999999999999999987421 2369999999999999999887
Q ss_pred CC-----CCCCCceEEEEee
Q 013031 369 DE-----GNWRSGLRVRLML 383 (451)
Q Consensus 369 g~-----~~~~~gLrV~l~~ 383 (451)
.. .+.+..+.++++.
T Consensus 59 ~~~~~~~~i~~~~~~~~vLe 78 (105)
T PF08777_consen 59 EANDGKLKIKGKEVTLEVLE 78 (105)
T ss_dssp HTTTS-B-TTSSSEEEE---
T ss_pred hccCCceEEcCceEEEEECC
Confidence 65 2223345666554
No 107
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.71 E-value=0.00018 Score=60.15 Aligned_cols=68 Identities=19% Similarity=0.319 Sum_probs=47.9
Q ss_pred eEEEEcCCCCcccHH----HHHHHHhcCC-ceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHH
Q 013031 289 RIVVAENLPEDHCHQ----NLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (451)
Q Consensus 289 RTVyV~nLP~d~t~e----~L~e~Fs~fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekA 363 (451)
..|||.|||.+.+.. -|+.++.-|| +|..|. .+.|+|-|.+.|.|++|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------------------------~~tAilrF~~~~~A~RA 55 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------------------------GGTAILRFPNQEFAERA 55 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------------------------TT-EEEEESSHHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------------------------CCEEEEEeCCHHHHHHH
Confidence 479999999987654 5778888886 565552 45799999999999999
Q ss_pred HHHHcCCCCCCCceEEEEee
Q 013031 364 IAELNDEGNWRSGLRVRLML 383 (451)
Q Consensus 364 v~~Lng~~~~~~gLrV~l~~ 383 (451)
.+.|+++..+++.|.|++.-
T Consensus 56 ~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 56 QKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp HHHHTT--SSSS--EEESS-
T ss_pred HHhhcccccccceEEEEEcC
Confidence 99999999999999998763
No 108
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.70 E-value=8.3e-05 Score=71.91 Aligned_cols=163 Identities=17% Similarity=0.204 Sum_probs=102.1
Q ss_pred HHHHhhccccccCCCccccCHHHHhhhccCCCCceecccccch-hhHHHhhc-----CHHHHHHHhhcCcceE-----Ee
Q 013031 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASF-KKIKAIIS-----SHSHLASVLRKSSKLV-----VS 266 (451)
Q Consensus 198 ~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sF-kKmK~Lt~-----d~~~I~~ALr~S~~Le-----Vs 266 (451)
.++++++|.-.||..-=.-|--.++..++.+.-||-++.+.+= .-+++|.. ..-.|..|..+|+.+. +.
T Consensus 23 ~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v 102 (221)
T KOG4206|consen 23 KDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFV 102 (221)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceec
Confidence 5678888888888766333333344456777788877664332 22333322 1234455555554331 11
Q ss_pred ecccc-----cccC-CCCcch----------------hhhcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCC
Q 013031 267 EDGKK-----IKRQ-NPLTES----------------DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQ 324 (451)
Q Consensus 267 edg~k-----VRR~-~Pl~e~----------------~~~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~ 324 (451)
+.+++ .++. .+.... +.......++++.|||.+++.+.|..+|..|.--+.||++..+
T Consensus 103 ~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~ 182 (221)
T KOG4206|consen 103 EKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR 182 (221)
T ss_pred cccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC
Confidence 11111 1100 110000 0112345799999999999999999999999999999997432
Q ss_pred CCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCC-CCceEEEEe
Q 013031 325 TSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNW-RSGLRVRLM 382 (451)
Q Consensus 325 ~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~-~~gLrV~l~ 382 (451)
++.|||||.+...|.-|...|.+..+. ...|+|.++
T Consensus 183 ----------------------~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 183 ----------------------SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred ----------------------CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 678999999999999999999887665 334666554
No 109
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.57 E-value=3.2e-05 Score=82.58 Aligned_cols=82 Identities=28% Similarity=0.291 Sum_probs=70.8
Q ss_pred hcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHH
Q 013031 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (451)
Q Consensus 284 ~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekA 363 (451)
++.+.||||+--|...++.-+|++||+.+|+|..|+|+.++.+.+ .||-|||||.+.+....|
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~r-----------------skgi~Yvef~D~~sVp~a 237 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRR-----------------SKGIAYVEFCDEQSVPLA 237 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchh-----------------hcceeEEEEecccchhhH
Confidence 566789999999999999999999999999999999998876433 289999999999999998
Q ss_pred HHHHcCCCCCCCceEEEEee
Q 013031 364 IAELNDEGNWRSGLRVRLML 383 (451)
Q Consensus 364 v~~Lng~~~~~~gLrV~l~~ 383 (451)
|. |+|..+.+-.|.|..-.
T Consensus 238 ia-LsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 238 IA-LSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hh-hcCCcccCceeEecccH
Confidence 85 99998888777776544
No 110
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.57 E-value=8.7e-05 Score=81.26 Aligned_cols=101 Identities=20% Similarity=0.265 Sum_probs=75.6
Q ss_pred cccccccCCCCcch----------hhhcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccc
Q 013031 268 DGKKIKRQNPLTES----------DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSA 337 (451)
Q Consensus 268 dg~kVRR~~Pl~e~----------~~~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~ 337 (451)
|...+.|..++++. +.-+-....|||+||+..++++.|...|+.||.|.+|+|+.+++.-- |.
T Consensus 144 d~~~s~r~~~~p~~~~~s~~~gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeE------k~- 216 (877)
T KOG0151|consen 144 DSAVSSRFDPLPSRFDPSGRPGSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEE------KR- 216 (877)
T ss_pred CcchhhccCCCccccCCCCCCCcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhh------hc-
Confidence 34455666665532 11223456799999999999999999999999999999999875321 11
Q ss_pred cccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEe
Q 013031 338 KSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (451)
Q Consensus 338 K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~l~ 382 (451)
..+-|+||-|-+..||++|+++|+|..+.+..||+-+.
T Consensus 217 -------r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWg 254 (877)
T KOG0151|consen 217 -------RERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWG 254 (877)
T ss_pred -------cccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccc
Confidence 12679999999999999999999997766655655443
No 111
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.46 E-value=0.00067 Score=70.62 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=65.2
Q ss_pred ceEEEEcCCCC-cccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 288 SRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 288 ~RTVyV~nLP~-d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
...|.|.||.+ .+|.+-|-.+|+-||+|..|.|++.+ |..|.|.|.+...|+-|++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----------------------kd~ALIQmsd~~qAqLA~~h 354 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----------------------KDNALIQMSDGQQAQLAMEH 354 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----------------------CcceeeeecchhHHHHHHHH
Confidence 35788899875 57999999999999999999997542 55799999999999999999
Q ss_pred HcCCCCCCCceEEEEeec
Q 013031 367 LNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~ 384 (451)
|++.++|++.|||.+-..
T Consensus 355 L~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 355 LEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred hhcceecCceEEEeeccC
Confidence 999999999898886543
No 112
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.37 E-value=0.00041 Score=52.84 Aligned_cols=52 Identities=21% Similarity=0.406 Sum_probs=42.0
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
+.|-|.|++.+.. +.+.+.|..||+|..+.+- . ...+.||+|++..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~--~---------------------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP--E---------------------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC--C---------------------CCcEEEEEECCHHHHHhhC
Confidence 6799999987654 5566699999999999872 0 1457999999999999995
No 113
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.36 E-value=0.00045 Score=70.40 Aligned_cols=83 Identities=22% Similarity=0.270 Sum_probs=60.7
Q ss_pred cccceEEEEcCCCCcccHHH----H--HHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHH
Q 013031 285 ELQSRIVVAENLPEDHCHQN----L--MKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (451)
Q Consensus 285 e~~~RTVyV~nLP~d~t~e~----L--~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~E 358 (451)
.++..-|||-+|+..+..|+ | .++|++||+|..|.+-+. .++.+... ...-+||+|.+.|
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkk------t~s~nst~--------~h~gvYITy~~ke 176 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKK------TSSLNSTA--------SHAGVYITYSTKE 176 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEeccc------cccccccc--------ccceEEEEecchH
Confidence 34566899999998776655 2 489999999999988432 11111110 0122699999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEE
Q 013031 359 LAEKAIAELNDEGNWRSGLRVRL 381 (451)
Q Consensus 359 dAekAv~~Lng~~~~~~gLrV~l 381 (451)
||.+||.+.+|..+.|+-||...
T Consensus 177 dAarcIa~vDgs~~DGr~lkatY 199 (480)
T COG5175 177 DAARCIAEVDGSLLDGRVLKATY 199 (480)
T ss_pred HHHHHHHHhccccccCceEeeec
Confidence 99999999999988888887653
No 114
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.34 E-value=0.0002 Score=69.48 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=51.3
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Ln 368 (451)
.||||-||..++|+++|+.+|+.|--...++|+- |. ....|||+|++.|.|..|+..|.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~------------~~---------g~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRA------------RG---------GMPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec------------CC---------CcceEeecHHHHHHHHHHHHHhh
Confidence 3899999999999999999999997766666631 10 14579999999999999999988
Q ss_pred CCCC
Q 013031 369 DEGN 372 (451)
Q Consensus 369 g~~~ 372 (451)
|..+
T Consensus 270 g~~~ 273 (284)
T KOG1457|consen 270 GNLL 273 (284)
T ss_pred ccee
Confidence 7543
No 115
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.32 E-value=0.0012 Score=56.64 Aligned_cols=67 Identities=19% Similarity=0.224 Sum_probs=52.4
Q ss_pred eEEEEcCCCCcccHHHHHHHHhc--CCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSA--VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~--fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
.||.++|||-..|.++|.+++.. .|....+-+..| .++ ..|.|||||.|.+.+.|.+..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiD----------f~~-------~~N~GYAFVNf~~~~~~~~F~~~ 64 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPID----------FKN-------KCNLGYAFVNFTSPQAAIRFYKA 64 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeee----------ccC-------CCceEEEEEEcCCHHHHHHHHHH
Confidence 58999999999999999988876 355555554322 221 13689999999999999999999
Q ss_pred HcCCCC
Q 013031 367 LNDEGN 372 (451)
Q Consensus 367 Lng~~~ 372 (451)
++|...
T Consensus 65 f~g~~w 70 (97)
T PF04059_consen 65 FNGKKW 70 (97)
T ss_pred HcCCcc
Confidence 998654
No 116
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.32 E-value=0.00076 Score=71.57 Aligned_cols=59 Identities=25% Similarity=0.363 Sum_probs=47.1
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..-|-+.+||+.+|+++|.+||+.++ |+++.+.+ ..++ ..|-|||||+++||+++|++.
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr-----------------~sGeA~Ve~~seedv~~Alkk 68 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGR-----------------PSGEAYVEFTSEEDVEKALKK 68 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCC-----------------cCcceEEEeechHHHHHHHHh
Confidence 34677899999999999999999995 67755532 2222 267899999999999999984
No 117
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.31 E-value=0.00013 Score=70.65 Aligned_cols=71 Identities=23% Similarity=0.267 Sum_probs=61.1
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..+.++|.++..++.+++|++.|..||.+....+. .+++||+|++.++|.+|+..
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------------------------~~~~~v~Fs~~~da~ra~~~ 152 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------------------------RNFAFVEFSEQEDAKRALEK 152 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------------------------ccccceeehhhhhhhhcchh
Confidence 35678999999999999999999999998555441 56799999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 013031 367 LNDEGNWRSGLRVRLM 382 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~ 382 (451)
|++..+.++.|.+...
T Consensus 153 l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 153 LDGKKLNGRRISVEKN 168 (216)
T ss_pred ccchhhcCceeeeccc
Confidence 9999999988888443
No 118
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.29 E-value=0.00071 Score=71.81 Aligned_cols=134 Identities=23% Similarity=0.299 Sum_probs=78.4
Q ss_pred cccCCCccccCHHHHhhh--ccCCCCceecccccchhhHHHhhcCHHHHHHHhhcC------cceEEeecc-c---c-cc
Q 013031 207 YYFSDLNLATTDHLIRFI--LKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS------SKLVVSEDG-K---K-IK 273 (451)
Q Consensus 207 yYFSD~NL~~D~fL~~~i--~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S------~~LeVsedg-~---k-VR 273 (451)
-+|||.++.. |+..+. +.+.|-||.+. ..+++.+||++. .-|||-.-+ + . .|
T Consensus 29 ~Ff~~~~I~~--~~~~r~~Gr~sGeA~Ve~~-------------seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~ 93 (510)
T KOG4211|consen 29 DFFSNCGIEN--LEIPRRNGRPSGEAYVEFT-------------SEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMR 93 (510)
T ss_pred HHHhcCceeE--EEEeccCCCcCcceEEEee-------------chHHHHHHHHhhHHHhCCceEEEEccCCcccccccc
Confidence 4689988876 222211 12345566543 355666677653 236664321 1 1 12
Q ss_pred cCCCCcchhhhcccceEEEEcCCCCcccHHHHHHHHhcCCceEE-EEEeCCCCCCCCCCCCCccccccCcccCCccEEEE
Q 013031 274 RQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFV 352 (451)
Q Consensus 274 R~~Pl~e~~~~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~-Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFV 352 (451)
+..+-. ....-.|-+++||+.+|+++|.+||+..--|.. |.+..+. | ++ ..|-|||
T Consensus 94 ~~g~~s-----~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~----------r-gR-------~tGEAfV 150 (510)
T KOG4211|consen 94 PGGPNS-----SANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ----------R-GR-------PTGEAFV 150 (510)
T ss_pred CCCCCC-----CCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC----------C-CC-------cccceEE
Confidence 221111 123457889999999999999999998644444 3232221 1 11 2678999
Q ss_pred EeCCHHHHHHHHHHHcCCCCCCCceEE
Q 013031 353 EYESVELAEKAIAELNDEGNWRSGLRV 379 (451)
Q Consensus 353 EFet~EdAekAv~~Lng~~~~~~gLrV 379 (451)
.|++.|.|++|+..-+ +.+..+-|.|
T Consensus 151 qF~sqe~ae~Al~rhr-e~iGhRYIEv 176 (510)
T KOG4211|consen 151 QFESQESAEIALGRHR-ENIGHRYIEV 176 (510)
T ss_pred EecCHHHHHHHHHHHH-HhhccceEEe
Confidence 9999999999998543 3344444443
No 119
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.23 E-value=0.0003 Score=72.08 Aligned_cols=91 Identities=20% Similarity=0.221 Sum_probs=70.0
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..-||||-+|+..+|.+.|.++|.++|.|+. ++.+++..... .+ +-.....||-|.|.|++.-.|+.||..
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikr-----nK~t~kPki~~---y~-dkeT~~~KGeatvS~~D~~~akaai~~ 135 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKR-----NKRTGKPKIKI---YT-DKETGAPKGEATVSYEDPPAAKAAIEW 135 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceecc-----CCCCCCcchhc---cc-cccccCcCCceeeeecChhhhhhhhhh
Confidence 4559999999999999999999999997643 22222211110 11 113345699999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccC
Q 013031 367 LNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~ 386 (451)
+++..+.+..|+|.++..+.
T Consensus 136 ~agkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 136 FAGKDFCGNTIKVSLAERRT 155 (351)
T ss_pred hccccccCCCchhhhhhhcc
Confidence 99999999999999998765
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.16 E-value=0.00084 Score=73.70 Aligned_cols=75 Identities=21% Similarity=0.330 Sum_probs=61.1
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCce-EEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSV-KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V-~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
|.|-+.|+|++++.+||.+||..|-.+ .+|++++. +.| ...|-|-|-|++.|+|..|+..|
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G-----------------~pTGe~mvAfes~~eAr~A~~dl 929 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDG-----------------VPTGECMVAFESQEEARRASMDL 929 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCC-----------------CcccceeEeecCHHHHHhhhhcc
Confidence 467789999999999999999999755 55666542 111 12678999999999999999999
Q ss_pred cCCCCCCCceEEEE
Q 013031 368 NDEGNWRSGLRVRL 381 (451)
Q Consensus 368 ng~~~~~~gLrV~l 381 (451)
+++.+..+.++|+|
T Consensus 930 ~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 930 DGQKIRNRVVSLRI 943 (944)
T ss_pred ccCcccceeEEEEe
Confidence 99999888888776
No 121
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.08 E-value=0.0021 Score=65.79 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=62.4
Q ss_pred cceEEEEcCCC--C--ccc-------HHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeC
Q 013031 287 QSRIVVAENLP--E--DHC-------HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (451)
Q Consensus 287 ~~RTVyV~nLP--~--d~t-------~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFe 355 (451)
..|||+++|+= . +.+ .++|++-.++||.|.+|.++ ++ .+.|.+-|.|.
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d~--------------------hPdGvvtV~f~ 322 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-DR--------------------HPDGVVTVSFR 322 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-cc--------------------CCCceeEEEeC
Confidence 46899999972 1 222 35778889999999999885 32 13788999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEEEeecc
Q 013031 356 SVELAEKAIAELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 356 t~EdAekAv~~Lng~~~~~~gLrV~l~~~r 385 (451)
+.++|..||+.|+|+.+.++.|...+...+
T Consensus 323 n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 323 NNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred ChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 999999999999999988888887777543
No 122
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0012 Score=71.17 Aligned_cols=78 Identities=28% Similarity=0.315 Sum_probs=59.0
Q ss_pred ceEEEEcCCCC--cccHH----HHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHH
Q 013031 288 SRIVVAENLPE--DHCHQ----NLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (451)
Q Consensus 288 ~RTVyV~nLP~--d~t~e----~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAe 361 (451)
...|+|.|+|- ....+ -|.++|+++|+|.++-+-.+. ..+.|||+|+||++..+|+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e------------------~ggtkG~lf~E~~~~~~A~ 119 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE------------------EGGTKGYLFVEYASMRDAK 119 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc------------------cCCeeeEEEEEecChhhHH
Confidence 45789999985 22333 366899999999888763221 1224999999999999999
Q ss_pred HHHHHHcCCCCCCCc-eEEEEee
Q 013031 362 KAIAELNDEGNWRSG-LRVRLML 383 (451)
Q Consensus 362 kAv~~Lng~~~~~~g-LrV~l~~ 383 (451)
+||+.|||..+..+. +.|+++.
T Consensus 120 ~aVK~l~G~~ldknHtf~v~~f~ 142 (698)
T KOG2314|consen 120 KAVKSLNGKRLDKNHTFFVRLFK 142 (698)
T ss_pred HHHHhcccceecccceEEeehhh
Confidence 999999998886653 6777664
No 123
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.84 E-value=0.00085 Score=72.15 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=71.3
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
...|||+|||...++.+++++.+.||.++..+++.+..+ ..+|||||.||.+......|++.|
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~-----------------g~skg~af~ey~dpsvtd~A~agL 351 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT-----------------GNSKGFAFCEYCDPSVTDQAIAGL 351 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc-----------------ccccceeeeeeeCCcchhhhhccc
Confidence 457999999999999999999999999999998866432 235999999999999999999999
Q ss_pred cCCCCCCCceEEEEeeccC
Q 013031 368 NDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 368 ng~~~~~~gLrV~l~~~r~ 386 (451)
||..+.++.|.|..+....
T Consensus 352 nGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 352 NGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred chhhhcCceeEeehhhccc
Confidence 9999988889888776433
No 124
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.80 E-value=0.0019 Score=65.23 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=63.3
Q ss_pred ceEEE-EcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 288 SRIVV-AENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 288 ~RTVy-V~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++| |++|+++++.++|...|..+|.|..||+.-...++ ..+||+||+|.+..++.+++..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~-----------------~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESG-----------------DSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCcc-----------------chhhhhhhhhhhchhHHHHhhc
Confidence 34666 99999999999999999999999999985443222 2389999999999999998886
Q ss_pred HcCCCCCCCceEEEEeeccC
Q 013031 367 LNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~ 386 (451)
....+.++.+++..-..+.
T Consensus 247 -~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 247 -QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred -ccCcccCcccccccCCCCc
Confidence 6666666667766555443
No 125
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.53 E-value=0.0058 Score=65.87 Aligned_cols=66 Identities=15% Similarity=0.218 Sum_probs=49.2
Q ss_pred HHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEe
Q 013031 303 QNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (451)
Q Consensus 303 e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~l~ 382 (451)
|+++.-+++||.|.+|.+-++-.. . ......|.+||||.+.|+|++|+++|+|..+.++.+...+.
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~--------~------~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPD--------E------NPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCC--------C------CcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 455667788999999998655110 0 11123788999999999999999999999988876555444
No 126
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.22 E-value=0.037 Score=52.72 Aligned_cols=67 Identities=24% Similarity=0.197 Sum_probs=57.6
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Ln 368 (451)
-.|+|.+||...++++|++.+.+-|.|....+.+ .|++.|+|-..|+.+-||+.|+
T Consensus 116 ~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r------------------------Dg~GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 116 YRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR------------------------DGVGVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred eeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec------------------------ccceeeeeeehhhHHHHHHhhc
Confidence 4699999999999999999999999998888743 3578999999999999999999
Q ss_pred CCCCCCCceEE
Q 013031 369 DEGNWRSGLRV 379 (451)
Q Consensus 369 g~~~~~~gLrV 379 (451)
+..+.-.|+.+
T Consensus 172 ~~~~~seGe~~ 182 (241)
T KOG0105|consen 172 DQKFRSEGETA 182 (241)
T ss_pred cccccCcCcEe
Confidence 87765556443
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.18 E-value=0.0036 Score=70.24 Aligned_cols=78 Identities=22% Similarity=0.255 Sum_probs=65.1
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
...|+|.|.|+..|.+.|+.+|+++|.++++++.. .|.+| .||-|||.|.++.+|.+++...
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt-----------~r~gk-------pkg~a~v~y~~ea~~s~~~~s~ 797 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVT-----------VRAGK-------PKGKARVDYNTEADASRKVASV 797 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhh-----------hhccc-------cccceeccCCCcchhhhhcccc
Confidence 44799999999999999999999999999998753 23333 3788999999999999999988
Q ss_pred cCCCCCCCceEEEEee
Q 013031 368 NDEGNWRSGLRVRLML 383 (451)
Q Consensus 368 ng~~~~~~gLrV~l~~ 383 (451)
+...+..+++.|.+-+
T Consensus 798 d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 798 DVAGKRENNGEVQVSN 813 (881)
T ss_pred hhhhhhhcCccccccC
Confidence 8777777777777744
No 128
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=0.023 Score=60.96 Aligned_cols=68 Identities=21% Similarity=0.176 Sum_probs=49.2
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCcc---EEEEEeCCHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKL---HAFVEYESVELAEK 362 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG---~AFVEFet~EdAek 362 (451)
.-+|.|||++||.+++++.|...|..||.+..=.=.+. +... .+-.|| |+|+.|+++...+.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~----------~~~~-----~~ppkGs~~YvflvFe~E~sV~~ 321 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKA----------NSRG-----RAPPKGSYGYVFLVFEDERSVQS 321 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCc----------cccc-----cCCCCCcccEEEEEecchHHHHH
Confidence 45789999999999999999999999998643321111 0111 122366 99999999988877
Q ss_pred HHHHHc
Q 013031 363 AIAELN 368 (451)
Q Consensus 363 Av~~Ln 368 (451)
.+.+.-
T Consensus 322 Ll~aC~ 327 (520)
T KOG0129|consen 322 LLSACS 327 (520)
T ss_pred HHHHHh
Confidence 776654
No 129
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.95 E-value=0.0034 Score=62.01 Aligned_cols=63 Identities=19% Similarity=0.292 Sum_probs=47.4
Q ss_pred HHHHHHHHh-cCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEE
Q 013031 302 HQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVR 380 (451)
Q Consensus 302 ~e~L~e~Fs-~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~ 380 (451)
.|+|-..|+ +||+|+++.++... +..+ .|.+||.|..+|+|++|++.||+.-+.++.|...
T Consensus 82 yEd~f~E~~~kygEiee~~Vc~Nl----------------~~hl--~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae 143 (260)
T KOG2202|consen 82 YEDVFTELEDKYGEIEELNVCDNL----------------GDHL--VGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAE 143 (260)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccc----------------chhh--hhhhhhhcccHHHHHHHHHHHcCccccCCcceee
Confidence 345555555 89999999886321 1112 7889999999999999999999988777777655
Q ss_pred Ee
Q 013031 381 LM 382 (451)
Q Consensus 381 l~ 382 (451)
+.
T Consensus 144 ~~ 145 (260)
T KOG2202|consen 144 LS 145 (260)
T ss_pred ec
Confidence 43
No 130
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.82 E-value=0.0046 Score=61.14 Aligned_cols=83 Identities=20% Similarity=0.208 Sum_probs=58.4
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
.-.||+++||..++..-|++||+.||.|-.|-+-....+ +. ....|.++.....| --+.|||.+.-.|++....|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s-~~-~~r~~~~~n~~~~y---~EGWvEF~~KrvAK~iAe~L 148 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDS-KR-AARKRKGGNYKKLY---SEGWVEFISKRVAKRIAELL 148 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhH-HH-HHHhhcCCCccccc---hhHHHHHHHHHHHHHHHHHh
Confidence 347999999999999999999999999999987432211 00 00111111111111 12679999999999999999
Q ss_pred cCCCCCCC
Q 013031 368 NDEGNWRS 375 (451)
Q Consensus 368 ng~~~~~~ 375 (451)
|+..+.++
T Consensus 149 nn~~Iggk 156 (278)
T KOG3152|consen 149 NNTPIGGK 156 (278)
T ss_pred CCCccCCC
Confidence 99877664
No 131
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.67 E-value=0.0077 Score=62.97 Aligned_cols=74 Identities=19% Similarity=0.178 Sum_probs=55.5
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
.++.|.++|||.++++++|.+++..||+|.++.+++- |.-||+||.+++.|..-|..
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG-----------------------knQAflem~d~~sAvtmv~~ 83 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG-----------------------KNQAFLEMADEESAVTMVNY 83 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeecc-----------------------chhhhhhhcchhhhhheeec
Confidence 5788999999999999999999999999999988632 33599999999988875544
Q ss_pred HcCCC--CCCCceEEEEee
Q 013031 367 LNDEG--NWRSGLRVRLML 383 (451)
Q Consensus 367 Lng~~--~~~~gLrV~l~~ 383 (451)
+.... +.+..|.|.+-.
T Consensus 84 y~~~~p~lr~~~~yiq~sn 102 (492)
T KOG1190|consen 84 YTSVTPVLRGQPIYIQYSN 102 (492)
T ss_pred ccccCccccCcceeehhhh
Confidence 43322 223345555433
No 132
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.66 E-value=0.024 Score=52.04 Aligned_cols=61 Identities=21% Similarity=0.208 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEE
Q 013031 302 HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRL 381 (451)
Q Consensus 302 ~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~l 381 (451)
..+|.+.|..||+|..||+.. +.-+|+|.+-+.|.+|+. |+|.++.++.|+|++
T Consensus 50 ~~~ll~~~~~~GevvLvRfv~-------------------------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 50 MDELLQKFAQYGEVVLVRFVG-------------------------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRL 103 (146)
T ss_dssp HHHHHHHHHCCS-ECEEEEET-------------------------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE
T ss_pred HHHHHHHHHhCCceEEEEEeC-------------------------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEe
Confidence 347888999999999999852 247799999999999988 899999998999998
Q ss_pred eeccCCC
Q 013031 382 MLRRGSK 388 (451)
Q Consensus 382 ~~~r~~k 388 (451)
..+-+.+
T Consensus 104 KtpdW~~ 110 (146)
T PF08952_consen 104 KTPDWLK 110 (146)
T ss_dssp -------
T ss_pred CCccHHH
Confidence 8765554
No 133
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.66 E-value=0.025 Score=57.16 Aligned_cols=66 Identities=20% Similarity=0.167 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEE
Q 013031 302 HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRL 381 (451)
Q Consensus 302 ~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~l 381 (451)
++++++-+++||+|.+|-|..... .|. .+ -.-.||||+..|+|.||+-.|||+.+.++.++.++
T Consensus 300 ede~keEceKyg~V~~viifeip~----~p~-de-----------avRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPS----QPE-DE-----------AVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCC----Ccc-ch-----------hheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 457888999999999998764421 111 11 22389999999999999999999999888777776
Q ss_pred ee
Q 013031 382 ML 383 (451)
Q Consensus 382 ~~ 383 (451)
.+
T Consensus 364 yn 365 (378)
T KOG1996|consen 364 YN 365 (378)
T ss_pred cc
Confidence 65
No 134
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.44 E-value=0.049 Score=46.95 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=46.2
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..+.|.|=|||.. ....|.+.|++||+|....-......+.. ....+......-|+|++..+|++||.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~----------~~~~~~~~NWi~I~Y~~~~~A~rAL~- 72 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGIN----------PYPIPSGGNWIHITYDNPLSAQRALQ- 72 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG--------------------E-CCTTEEEEEESSHHHHHHHHT-
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccc----------cccCCCCCCEEEEECCCHHHHHHHHH-
Confidence 4567889999988 55678889999999977752111000000 00112235678899999999999998
Q ss_pred HcCCCCCC
Q 013031 367 LNDEGNWR 374 (451)
Q Consensus 367 Lng~~~~~ 374 (451)
-||..+.+
T Consensus 73 ~NG~i~~g 80 (100)
T PF05172_consen 73 KNGTIFSG 80 (100)
T ss_dssp TTTEEETT
T ss_pred hCCeEEcC
Confidence 47766544
No 135
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.25 E-value=0.0066 Score=62.03 Aligned_cols=83 Identities=22% Similarity=0.355 Sum_probs=59.0
Q ss_pred ccceEEEEcCCCCcccHHHHH---HHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLM---KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~---e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAek 362 (451)
++.+-+||-+|+.+...+.+. +.|..||.|.+|.+.++.. .....+ +...+||+|+..|+|..
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S----------~~s~~~----~~~s~yITy~~~eda~r 140 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPS----------SSSSSG----GTCSVYITYEEEEDADR 140 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcc----------cccCCC----CCCcccccccchHhhhh
Confidence 456678999999877655443 6899999999999865421 011111 24459999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEe
Q 013031 363 AIAELNDEGNWRSGLRVRLM 382 (451)
Q Consensus 363 Av~~Lng~~~~~~gLrV~l~ 382 (451)
||...++..+.++.|+..+.
T Consensus 141 ci~~v~g~~~dg~~lka~~g 160 (327)
T KOG2068|consen 141 CIDDVDGFVDDGRALKASLG 160 (327)
T ss_pred HHHHhhhHHhhhhhhHHhhC
Confidence 99998887666665544433
No 136
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.24 E-value=0.081 Score=48.57 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=48.0
Q ss_pred ccceEEEEcCCCCccc----HHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHH
Q 013031 286 LQSRIVVAENLPEDHC----HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t----~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAe 361 (451)
..-.||+|+-|..++. ...+....+.||.|.+|.++- +-.|.|.|++..+|-
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------------------------rqsavVvF~d~~SAC 139 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------------------------RQSAVVVFKDITSAC 139 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------------------------CceEEEEehhhHHHH
Confidence 3456999988876653 345556678899999999862 446999999999999
Q ss_pred HHHHHHcCC
Q 013031 362 KAIAELNDE 370 (451)
Q Consensus 362 kAv~~Lng~ 370 (451)
+||.++...
T Consensus 140 ~Av~Af~s~ 148 (166)
T PF15023_consen 140 KAVSAFQSR 148 (166)
T ss_pred HHHHhhcCC
Confidence 999998763
No 137
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.18 E-value=0.075 Score=55.29 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=61.4
Q ss_pred ceEEEEcCCCC-cccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 288 SRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 288 ~RTVyV~nLP~-d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
.+.+.|.+|.. .++-+.|-.+|--||.|+.|..++.+ .|.|.||+-+.++.++||..
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----------------------~gtamVemgd~~aver~v~h 344 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----------------------PGTAMVEMGDAYAVERAVTH 344 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----------------------cceeEEEcCcHHHHHHHHHH
Confidence 45678889975 56778899999999999999986432 57899999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 013031 367 LNDEGNWRSGLRVRLML 383 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~ 383 (451)
||+..+++..|.|++-.
T Consensus 345 Lnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 345 LNNIPLFGGKLNVCVSK 361 (494)
T ss_pred hccCccccceEEEeecc
Confidence 99998887777776543
No 138
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.48 E-value=0.09 Score=56.56 Aligned_cols=63 Identities=22% Similarity=0.190 Sum_probs=52.9
Q ss_pred cceEEEEcCCCCcccHHHHHHHHh-cCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs-~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
..|||||++||.-++-++|-.||+ -||.|..|-|-.|. ..|+ .||.+=|+|.+-..-.+||.
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~-----------k~KY------PkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDP-----------KLKY------PKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCc-----------ccCC------CCCcceeeecccHHHHHHHh
Confidence 368999999999999999999999 79999999984331 1222 48999999999999999987
Q ss_pred H
Q 013031 366 E 366 (451)
Q Consensus 366 ~ 366 (451)
.
T Consensus 432 a 432 (520)
T KOG0129|consen 432 A 432 (520)
T ss_pred h
Confidence 4
No 139
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=94.41 E-value=0.026 Score=64.79 Aligned_cols=52 Identities=25% Similarity=0.452 Sum_probs=47.4
Q ss_pred ccCCCCceecccccchhhHHHhhcCHHHHHHHhhc-CcceEEeecccccccCC
Q 013031 225 LKDPEGYVPISTVASFKKIKAIISSHSHLASVLRK-SSKLVVSEDGKKIKRQN 276 (451)
Q Consensus 225 ~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~-S~~LeVsedg~kVRR~~ 276 (451)
.-|.||||-|.+||+.-.+-.|..+.+.|..||.+ |++|+|+.||.|||.+-
T Consensus 472 ~pDaeGWVYLNLL~NmAQLHiiNVTPdFVRsAV~E~StKfQLSpDGrKIRWRG 524 (989)
T PF09421_consen 472 HPDAEGWVYLNLLCNMAQLHIINVTPDFVRSAVSEKSTKFQLSPDGRKIRWRG 524 (989)
T ss_pred CcccccceehHHHHHHHHHHhhccCHHHHHHHHHhcccceeeCCCCCeeeecC
Confidence 35889999999999999999999999999999985 88999999999999864
No 140
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.29 E-value=0.12 Score=54.10 Aligned_cols=60 Identities=25% Similarity=0.295 Sum_probs=43.9
Q ss_pred eEEEEcCCCCcccHHHHHHHHhc-----CCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHH
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSA-----VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~-----fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekA 363 (451)
-.|-.+|||++++..++.+||.. -|++.-+-+.++. .| ..|-|||.|.++|+|++|
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd---------gr----------pTGdAFvlfa~ee~aq~a 222 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD---------GR----------PTGDAFVLFACEEDAQFA 222 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC---------CC----------cccceEEEecCHHHHHHH
Confidence 35778899999999999999972 3433333443321 11 267899999999999999
Q ss_pred HHHH
Q 013031 364 IAEL 367 (451)
Q Consensus 364 v~~L 367 (451)
+..-
T Consensus 223 L~kh 226 (508)
T KOG1365|consen 223 LRKH 226 (508)
T ss_pred HHHH
Confidence 9753
No 141
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.29 E-value=0.18 Score=39.86 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=42.1
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcC----CceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAV----GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~f----G~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAek 362 (451)
....|+|.|+ .+++.++|+.+|..| + ...|.-+- ..+|-|.|.+.+.|.+
T Consensus 4 rpeavhirGv-d~lsT~dI~~y~~~y~~~~~-~~~IEWId------------------------DtScNvvf~d~~~A~~ 57 (62)
T PF10309_consen 4 RPEAVHIRGV-DELSTDDIKAYFSEYFDEEG-PFRIEWID------------------------DTSCNVVFKDEETAAR 57 (62)
T ss_pred eeceEEEEcC-CCCCHHHHHHHHHHhcccCC-CceEEEec------------------------CCcEEEEECCHHHHHH
Confidence 3458999998 457889999999999 4 34554432 2358899999999999
Q ss_pred HHHHH
Q 013031 363 AIAEL 367 (451)
Q Consensus 363 Av~~L 367 (451)
|+..|
T Consensus 58 AL~~L 62 (62)
T PF10309_consen 58 ALVAL 62 (62)
T ss_pred HHHcC
Confidence 99864
No 142
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.74 E-value=0.08 Score=60.17 Aligned_cols=76 Identities=20% Similarity=0.176 Sum_probs=64.8
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..+.++|++|...+....|...|..||.|..|.+..- ..||||.|++...|+.|+..
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----------------------q~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----------------------QPYAYIQYESPPAAQAATHD 510 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----------------------CcceeeecccCccchhhHHH
Confidence 4567999999999999999999999999999987421 45899999999999999999
Q ss_pred HcCCCCCCC--ceEEEEeecc
Q 013031 367 LNDEGNWRS--GLRVRLMLRR 385 (451)
Q Consensus 367 Lng~~~~~~--gLrV~l~~~r 385 (451)
|.+..+.+- .|+|.++..-
T Consensus 511 ~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 511 MRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred HhcCcCCCCCcccccccccCC
Confidence 999887653 4888887653
No 143
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=93.42 E-value=0.24 Score=55.62 Aligned_cols=16 Identities=13% Similarity=0.273 Sum_probs=7.7
Q ss_pred CCCChHHHHHHhhccc
Q 013031 191 GGLNDESIQKVLNQVE 206 (451)
Q Consensus 191 ~~~~~e~~~kI~kQvE 206 (451)
..+.+.+-++|.+++.
T Consensus 387 tvf~~~~De~Il~~lD 402 (830)
T KOG1923|consen 387 TVFHELNDEKILEALD 402 (830)
T ss_pred chhhhhhHHHHHHhhh
Confidence 3344444555555443
No 144
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.38 E-value=6.6 Score=44.32 Aligned_cols=80 Identities=14% Similarity=0.001 Sum_probs=60.0
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEE-EEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~-Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
.-.|||+.||..+++.++.++|++--.|+. |.|.+- |.+.+ ++-|||+|..++++.+|...
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-------P~~~~-----------~~~afv~F~~~~a~~~a~~~ 495 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-------PTDLL-----------RPAAFVAFIHPTAPLTASSV 495 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccC-------Ccccc-----------cchhhheeccccccchhhhc
Confidence 347999999999999999999998777766 666432 11111 67799999999999998776
Q ss_pred HcCCCCCCCceEEEEeecc
Q 013031 367 LNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r 385 (451)
-.......+-|||+-..++
T Consensus 496 ~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 496 KTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred ccccccCceEEEeechhhH
Confidence 5555556677898866544
No 145
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=93.36 E-value=0.23 Score=51.79 Aligned_cols=74 Identities=26% Similarity=0.321 Sum_probs=57.2
Q ss_pred eEEEEcCC--CCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 289 RIVVAENL--PEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 289 RTVyV~nL--P~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..|.+.-| -+-+|.+=|-.+....|+|..|-|.+. +-.-|.|||++.+.|++|-..
T Consensus 121 ~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk----------------------ngVQAmVEFdsv~~AqrAk~a 178 (494)
T KOG1456|consen 121 KVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK----------------------NGVQAMVEFDSVEVAQRAKAA 178 (494)
T ss_pred eEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec----------------------cceeeEEeechhHHHHHHHhh
Confidence 34444434 367899999999999999999988632 123499999999999999999
Q ss_pred HcCCCCCCC--ceEEEEeec
Q 013031 367 LNDEGNWRS--GLRVRLMLR 384 (451)
Q Consensus 367 Lng~~~~~~--gLrV~l~~~ 384 (451)
|||..++.. .|||+++..
T Consensus 179 lNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 179 LNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred cccccccccceeEEEEecCc
Confidence 999887654 477776653
No 146
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=93.19 E-value=0.054 Score=32.69 Aligned_cols=16 Identities=56% Similarity=0.916 Sum_probs=12.6
Q ss_pred ccccccCCCCCCCCCC
Q 013031 36 SFSRLNAKAPEFVPTR 51 (451)
Q Consensus 36 ~~~~~~~~~p~~~p~~ 51 (451)
..|+||..|+||||+.
T Consensus 2 ~~s~LNp~A~eFvP~~ 17 (18)
T PF07145_consen 2 KSSKLNPNAPEFVPSS 17 (18)
T ss_dssp -SSSSSTTSSSS-TTT
T ss_pred cccccCCCCccccCCC
Confidence 4689999999999974
No 147
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.84 E-value=0.028 Score=63.67 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=64.1
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...||||++||+.++++.+|+..|..+|.|..|+|..+.. +. .--|+||.|.+...+-+|..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~------------~~------esa~~f~~~~n~dmtp~ak~ 431 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI------------KT------ESAYAFVSLLNTDMTPSAKF 431 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC------------Cc------ccchhhhhhhccccCcccch
Confidence 4578999999999999999999999999999999966532 10 13479999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 013031 366 ELNDEGNWRSGLRVRLM 382 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~ 382 (451)
++.+..+...++++.+-
T Consensus 432 e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 432 EESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhcCCccccCccccccc
Confidence 99987765555555444
No 148
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.61 E-value=0.71 Score=40.49 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=48.3
Q ss_pred EEEEcCCCCcccHHHHHHHHhcCC-ceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 013031 290 IVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (451)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Ln 368 (451)
.+.+-..+.-++.++|..+.+.+- .|..+||+++... |+--+.+.|.+.++|....+++|
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-------------------nrymVLikF~~~~~Ad~Fy~~fN 75 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-------------------NRYMVLIKFRDQESADEFYEEFN 75 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-------------------ceEEEEEEECCHHHHHHHHHHhC
Confidence 444445556667777876666654 5788899876532 23459999999999999999999
Q ss_pred CCCCCC
Q 013031 369 DEGNWR 374 (451)
Q Consensus 369 g~~~~~ 374 (451)
|+.+.-
T Consensus 76 Gk~Fns 81 (110)
T PF07576_consen 76 GKPFNS 81 (110)
T ss_pred CCccCC
Confidence 987644
No 149
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=91.99 E-value=0.13 Score=56.18 Aligned_cols=73 Identities=23% Similarity=0.357 Sum_probs=57.8
Q ss_pred cceEEEEcCCCCcccHHHHHHHHh-cCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs-~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
-+..|||.||=.-.|.-.|++++. ..|.|+..+| |+. |.+|||.|.+.++|-....
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkI---------------------KShCyV~yss~eEA~atr~ 499 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKI---------------------KSHCYVSYSSVEEAAATRE 499 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHh---------------------hcceeEecccHHHHHHHHH
Confidence 356899999998999999999998 6777887776 221 6679999999999999999
Q ss_pred HHcCCCCCCC----ceEEEEee
Q 013031 366 ELNDEGNWRS----GLRVRLML 383 (451)
Q Consensus 366 ~Lng~~~~~~----gLrV~l~~ 383 (451)
.|+|.. |-. -|.+.+..
T Consensus 500 AlhnV~-WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 500 ALHNVQ-WPPSNPKHLIADFVR 520 (718)
T ss_pred HHhccc-cCCCCCceeEeeecc
Confidence 999854 432 36666554
No 150
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=91.85 E-value=0.19 Score=52.64 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=50.2
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCc-eEE--EEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGS-VKT--IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~-V~~--Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
..+|-.+|||+..+.|+|..||+.|-. |+. |.|..... ....|-|||+|.++|+|..|.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q------------------GrPSGeAFIqm~nae~a~aaa 341 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ------------------GRPSGEAFIQMRNAERARAAA 341 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC------------------CCcChhhhhhhhhhHHHHHHH
Confidence 448999999999999999999999864 433 55554321 113678999999999999988
Q ss_pred HHHcCCC
Q 013031 365 AELNDEG 371 (451)
Q Consensus 365 ~~Lng~~ 371 (451)
....+..
T Consensus 342 qk~hk~~ 348 (508)
T KOG1365|consen 342 QKCHKKL 348 (508)
T ss_pred HHHHHhh
Confidence 8766543
No 151
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.67 E-value=0.013 Score=65.94 Aligned_cols=64 Identities=23% Similarity=0.346 Sum_probs=52.3
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
..++||+||+..++.++|...|+.+|.+..|++..-.. . ..| +|.|||+|...++|.+||...
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n--------------~-~~~--rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKN--------------E-KRF--RGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhh--------------c-ccc--ccceeeEeecCCchhhhhhhh
Confidence 45789999999999999999999999999998752211 0 122 899999999999999999854
Q ss_pred c
Q 013031 368 N 368 (451)
Q Consensus 368 n 368 (451)
+
T Consensus 730 d 730 (881)
T KOG0128|consen 730 D 730 (881)
T ss_pred h
Confidence 4
No 152
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=91.61 E-value=0.22 Score=49.63 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=54.2
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Ln 368 (451)
..|||.||...++.|.|++-|+.||.|....++-|. |. + ..+-.+|+|...-.|.+|.+.++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~----------r~-k-------~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD----------RG-K-------PTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc----------cc-c-------ccccchhhhhcchhHHHHHHHhc
Confidence 589999999999999999999999999887776542 11 1 13447899999999999999887
Q ss_pred CCCCCC
Q 013031 369 DEGNWR 374 (451)
Q Consensus 369 g~~~~~ 374 (451)
...+.+
T Consensus 94 ~~g~~~ 99 (275)
T KOG0115|consen 94 EGGFGG 99 (275)
T ss_pred cCcccc
Confidence 654433
No 153
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.35 E-value=0.13 Score=58.28 Aligned_cols=70 Identities=27% Similarity=0.210 Sum_probs=55.4
Q ss_pred EEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCC
Q 013031 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (451)
Q Consensus 291 VyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~ 370 (451)
.++.|..-..+...|..+|++||+|.++|++++- ..|.|+|.+.|.|..|.+.|.|+
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-----------------------N~alvs~~s~~sai~a~dAl~gk 357 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL-----------------------NMALVSFSSVESAILALDALQGK 357 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc-----------------------cchhhhhHHHHHHHHhhhhhcCC
Confidence 3455555667778899999999999999997652 24899999999999999999998
Q ss_pred CCCCCce--EEEEee
Q 013031 371 GNWRSGL--RVRLML 383 (451)
Q Consensus 371 ~~~~~gL--rV~l~~ 383 (451)
+....|. +|.++.
T Consensus 358 evs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 358 EVSVTGAPSRVSFAK 372 (1007)
T ss_pred cccccCCceeEEecc
Confidence 8766664 555444
No 154
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=91.29 E-value=0.27 Score=51.62 Aligned_cols=81 Identities=14% Similarity=0.218 Sum_probs=60.7
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Ln 368 (451)
+.|-|.||...+|.+++..+|+-.|+|..++|. +..-+..++.. .-.|||-|.+...+.-| ..|.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrly-p~~~d~~~pv~-------------sRtcyVkf~d~~sv~va-QhLt 72 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLY-PNVDDSKIPVI-------------SRTCYVKFLDSQSVTVA-QHLT 72 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhcccccccccc-CCCCCccCcce-------------eeeEEEeccCCcceeHH-hhhc
Confidence 478999999999999999999999999999984 43322222222 23599999999877655 4577
Q ss_pred CCCCCCCceEEEEeec
Q 013031 369 DEGNWRSGLRVRLMLR 384 (451)
Q Consensus 369 g~~~~~~gLrV~l~~~ 384 (451)
+..+-+..|.|.-+..
T Consensus 73 ntvfvdraliv~p~~~ 88 (479)
T KOG4676|consen 73 NTVFVDRALIVRPYGD 88 (479)
T ss_pred cceeeeeeEEEEecCC
Confidence 7777777777775543
No 155
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=91.22 E-value=0.25 Score=51.12 Aligned_cols=76 Identities=14% Similarity=0.049 Sum_probs=56.2
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCc--eEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGS--VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~--V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
.-++||+||-+.+|.++|.+....-|- +..+.+... |. ....||||+|...+....++.++
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFEN-----------R~------NGQSKG~AL~~~~SdAa~Kq~Me 142 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFEN-----------RT------NGQSKGYALLVLNSDAAVKQTME 142 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhc-----------cc------CCcccceEEEEecchHHHHHHHH
Confidence 447999999999999999988877664 333333222 21 11249999999999999999999
Q ss_pred HHcCCCCCCCceEEE
Q 013031 366 ELNDEGNWRSGLRVR 380 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~ 380 (451)
-|-.+++.+..-.|-
T Consensus 143 iLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 143 ILPTKTIHGQSPTVL 157 (498)
T ss_pred hcccceecCCCCeee
Confidence 888888877654444
No 156
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.20 E-value=0.63 Score=39.16 Aligned_cols=64 Identities=17% Similarity=0.322 Sum_probs=46.7
Q ss_pred EEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 013031 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (451)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng 369 (451)
..||. ||.+-...||.++|+.||.|.--.|- ...|||.....+.|..|++.++.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~-------------------------dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN-------------------------DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEEEEEEC-------------------------TTEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEEEEEEc-------------------------CCcEEEEeecHHHHHHHHHHhcc
Confidence 34555 99999999999999999998655551 34799999999999999998864
Q ss_pred CCCCCCceEEEEee
Q 013031 370 EGNWRSGLRVRLML 383 (451)
Q Consensus 370 ~~~~~~gLrV~l~~ 383 (451)
....+|+-..
T Consensus 65 ----~~~y~i~tY~ 74 (87)
T PF08675_consen 65 ----NSSYRIQTYA 74 (87)
T ss_dssp -----SSSEEEEHH
T ss_pred ----CCceEEEEHH
Confidence 3467777554
No 157
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=89.37 E-value=1.3 Score=50.10 Aligned_cols=8 Identities=25% Similarity=0.634 Sum_probs=4.3
Q ss_pred EEcCCCCc
Q 013031 292 VAENLPED 299 (451)
Q Consensus 292 yV~nLP~d 299 (451)
|++||++.
T Consensus 532 ~m~nF~ds 539 (830)
T KOG1923|consen 532 FMGNFPDS 539 (830)
T ss_pred HHHhchhh
Confidence 45565554
No 158
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=88.41 E-value=0.54 Score=44.35 Aligned_cols=71 Identities=11% Similarity=0.064 Sum_probs=44.8
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhc-CCce---EEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSA-VGSV---KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~-fG~V---~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAek 362 (451)
....|+|++||..+|++++.+.++. ++.- ..+.-.......+ . . . -.-|||.|.+.+++..
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~-------~-----~-~--~SRaYi~F~~~~~~~~ 70 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFK-------P-----P-T--YSRAYINFKNPEDLLE 70 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSST-------T-----S-----EEEEEEESSCHHHHH
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCC-------C-----C-c--ceEEEEEeCCHHHHHH
Confidence 4558999999999999999886666 6654 4454222221111 0 0 0 2349999999999999
Q ss_pred HHHHHcCCCC
Q 013031 363 AIAELNDEGN 372 (451)
Q Consensus 363 Av~~Lng~~~ 372 (451)
.++.++|..+
T Consensus 71 F~~~~~g~~F 80 (176)
T PF03467_consen 71 FRDRFDGHVF 80 (176)
T ss_dssp HHHHCTTEEE
T ss_pred HHHhcCCcEE
Confidence 9999988544
No 159
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=88.35 E-value=0.24 Score=52.96 Aligned_cols=77 Identities=17% Similarity=0.139 Sum_probs=59.1
Q ss_pred ccceEEEEcCCCCcc-cHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDH-CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~-t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
.+-+++-++-.++.. |.++|...|.+||+|.+|.+.+. -..|.|+|.+..+|-+|.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----------------------~~~a~vTF~t~aeag~a~ 426 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----------------------SLHAVVTFKTRAEAGEAY 426 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----------------------hhhheeeeeccccccchh
Confidence 345666666666654 67899999999999999998543 135999999999998877
Q ss_pred HHHcCCCCCCCceEEEEeeccC
Q 013031 365 AELNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~r~ 386 (451)
. ..+..+.++-|||.+-+...
T Consensus 427 ~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 427 A-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred c-cccceecCceeEEEEecCCc
Confidence 6 45567778889999887643
No 160
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.68 E-value=1.6 Score=46.78 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=58.0
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcC-CceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~f-G~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
.++|.|-.+|..+|.-||..|...| -.|..|||+++... |+-.+.|.|.+.++|....++
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-------------------nrymvLIkFr~q~da~~Fy~e 134 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-------------------NRYMVLIKFRDQADADTFYEE 134 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-------------------ceEEEEEEeccchhHHHHHHH
Confidence 7889999999999999999998765 46899999886432 234699999999999999999
Q ss_pred HcCCCCCCC
Q 013031 367 LNDEGNWRS 375 (451)
Q Consensus 367 Lng~~~~~~ 375 (451)
+||..+..-
T Consensus 135 fNGk~Fn~l 143 (493)
T KOG0804|consen 135 FNGKQFNSL 143 (493)
T ss_pred cCCCcCCCC
Confidence 999887653
No 161
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=87.10 E-value=0.28 Score=52.86 Aligned_cols=10 Identities=50% Similarity=0.690 Sum_probs=6.4
Q ss_pred HHHHHHhcCC
Q 013031 304 NLMKIFSAVG 313 (451)
Q Consensus 304 ~L~e~Fs~fG 313 (451)
+|..+|+.-|
T Consensus 741 eldnvfsagg 750 (990)
T KOG1819|consen 741 ELDNVFSAGG 750 (990)
T ss_pred chhhhhccCC
Confidence 5667777644
No 162
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=84.32 E-value=1.6 Score=41.61 Aligned_cols=60 Identities=22% Similarity=0.100 Sum_probs=41.6
Q ss_pred cHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHc--CCCCCCCceE
Q 013031 301 CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN--DEGNWRSGLR 378 (451)
Q Consensus 301 t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Ln--g~~~~~~gLr 378 (451)
..+.|+++|..|+.+..+..++- -+=..|.|.+.++|.+|...|+ +..+.+..++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----------------------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~ 64 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----------------------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLR 64 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----------------------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-E
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----------------------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceE
Confidence 45789999999999888876521 1128899999999999999988 6667776788
Q ss_pred EEEee
Q 013031 379 VRLML 383 (451)
Q Consensus 379 V~l~~ 383 (451)
|.+..
T Consensus 65 ~yf~~ 69 (184)
T PF04847_consen 65 VYFGQ 69 (184)
T ss_dssp EE---
T ss_pred EEEcc
Confidence 77664
No 163
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=83.12 E-value=1 Score=48.63 Aligned_cols=9 Identities=22% Similarity=0.353 Sum_probs=4.3
Q ss_pred CCCCChHHH
Q 013031 190 HGGLNDESI 198 (451)
Q Consensus 190 ~~~~~~e~~ 198 (451)
...+++++.
T Consensus 632 asslsddvs 640 (990)
T KOG1819|consen 632 ASSLSDDVS 640 (990)
T ss_pred cccccchhH
Confidence 334555543
No 164
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=82.10 E-value=2.6 Score=40.02 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=51.4
Q ss_pred hccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcceEEeecccccccCCC--Cc-chhh-hcccceEEEEcCCCCc
Q 013031 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNP--LT-ESDL-EELQSRIVVAENLPED 299 (451)
Q Consensus 224 i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~LeVsedg~kVRR~~P--l~-e~~~-~e~~~RTVyV~nLP~d 299 (451)
+.+|++|||+++.++...+.+...-+.+.|.+.+.++++-...-++.+||-..- +. +.+. ......+||= .
T Consensus 26 L~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K~Rf~l~~~~IRA~qGHSi~v~~~~~~~~~P~~lyH-----G 100 (179)
T PRK00819 26 LTLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDKGRFEISGDRIRARQGHSVDVDLDLEEDTPPAVLYH-----G 100 (179)
T ss_pred CccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCCcceEecCceEEeccCcCCccccCCccCCCCceeEe-----C
Confidence 457999999999999876644333477888888888776333323567776642 11 1011 1111224442 3
Q ss_pred ccHHHHHHHHhcCC
Q 013031 300 HCHQNLMKIFSAVG 313 (451)
Q Consensus 300 ~t~e~L~e~Fs~fG 313 (451)
+..+.+..|++. |
T Consensus 101 T~~~~~~~I~~~-G 113 (179)
T PRK00819 101 TSSEELDSILEE-G 113 (179)
T ss_pred CCHHHHHHHHHh-C
Confidence 677888888865 5
No 165
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.47 E-value=4.3 Score=44.79 Aligned_cols=91 Identities=19% Similarity=0.209 Sum_probs=62.3
Q ss_pred cceEEEEcCCCCc-ccHHHHHHHHhcC----CceEEEEEeCCCCCCCC--------CCC---------------------
Q 013031 287 QSRIVVAENLPED-HCHQNLMKIFSAV----GSVKTIRTCLPQTSGGG--------ASS--------------------- 332 (451)
Q Consensus 287 ~~RTVyV~nLP~d-~t~e~L~e~Fs~f----G~V~~Vri~~p~~~~~~--------~p~--------------------- 332 (451)
..+.|-|.|+.++ +.-++|.-+|+.| |.|.+|.|+. ..-|+. .|.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYp-SeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYP-SEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEech-hhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 3567999999986 5678999999887 6999999863 222221 110
Q ss_pred -----CCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEE
Q 013031 333 -----GSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRL 381 (451)
Q Consensus 333 -----~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~l 381 (451)
..|.+-.. . .-.-||.|+|++.+.|.+.+++++|..+...++++.|
T Consensus 252 ~~~~~kLR~Yq~~-r--LkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 252 DVDREKLRQYQLN-R--LKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hHHHHHHHHHHhh-h--heeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 00111110 0 0124799999999999999999999988887765553
No 166
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=80.61 E-value=1.1 Score=42.81 Aligned_cols=52 Identities=17% Similarity=0.426 Sum_probs=33.6
Q ss_pred ccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcc--eEEe---ecccccccCC
Q 013031 225 LKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK--LVVS---EDGKKIKRQN 276 (451)
Q Consensus 225 ~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~--LeVs---edg~kVRR~~ 276 (451)
.+|+||||+++.|+...+++...-+.+.|.++++++.+ .++. .++.+||-..
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K~Rfel~~~~~~~~~IRA~q 82 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDKQRFELRYEDPGGWRIRANQ 82 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS--EEEE-----TTEEEESS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCCeeEEcccccCceEEECC
Confidence 47899999999999999998776678899999987764 5666 5567787654
No 167
>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]
Probab=79.33 E-value=1.2 Score=42.15 Aligned_cols=40 Identities=10% Similarity=0.379 Sum_probs=35.5
Q ss_pred hhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcc
Q 013031 223 FILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK 262 (451)
Q Consensus 223 ~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~ 262 (451)
+++++.||||++..+++.++.+.+....++|.++++..++
T Consensus 26 ~L~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~ndK 65 (207)
T KOG2278|consen 26 RLNMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRNDK 65 (207)
T ss_pred cccccCCCceEHHHHhccchhcccCCcHHHHHHHHhcccc
Confidence 3468899999999999999999998899999999987664
No 168
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=79.27 E-value=18 Score=37.97 Aligned_cols=10 Identities=20% Similarity=0.059 Sum_probs=3.9
Q ss_pred CcCcccCCCc
Q 013031 123 HHVPVQNYHH 132 (451)
Q Consensus 123 ~~~~~~~~~~ 132 (451)
|.-|-++.-+
T Consensus 314 h~NpaffpPP 323 (498)
T KOG4849|consen 314 HNNPAFFPPP 323 (498)
T ss_pred ccCcccCCCC
Confidence 3333333333
No 169
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=75.94 E-value=2.5 Score=44.99 Aligned_cols=58 Identities=26% Similarity=0.380 Sum_probs=45.1
Q ss_pred EEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 013031 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (451)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng 369 (451)
.+|++||.+..+..+|+.+|...- + + + .|..+--.||+||.+.+..-|.+|++.+++
T Consensus 3 klyignL~p~~~psdl~svfg~ak------~--~---~------------~g~fl~k~gyafvd~pdq~wa~kaie~~sg 59 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAK------I--P---G------------SGQFLVKSGYAFVDCPDQQWANKAIETLSG 59 (584)
T ss_pred cccccccCCCCChHHHHHHhcccc------C--C---C------------CcceeeecceeeccCCchhhhhhhHHhhch
Confidence 589999999999999999997641 0 0 0 011112268999999999999999999998
Q ss_pred C
Q 013031 370 E 370 (451)
Q Consensus 370 ~ 370 (451)
.
T Consensus 60 k 60 (584)
T KOG2193|consen 60 K 60 (584)
T ss_pred h
Confidence 5
No 170
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=75.47 E-value=2.4 Score=43.09 Aligned_cols=77 Identities=14% Similarity=-0.030 Sum_probs=57.4
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
...++|++++-+.+.+.++..+|..+|.+...++..-.. .+..+|+++|.|+..+.+..|+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~-----------------~~~sk~~~s~~f~~ks~~~~~l~~ 149 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLED-----------------SLSSKGGLSVHFAGKSQFFAALEE 149 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhcc-----------------ccccccceeeccccHHHHHHHHHh
Confidence 367899999999998899999999999877776643221 123489999999999999999986
Q ss_pred HcCCCCCCCceEEE
Q 013031 367 LNDEGNWRSGLRVR 380 (451)
Q Consensus 367 Lng~~~~~~gLrV~ 380 (451)
.....+.++.+...
T Consensus 150 s~~~~~~~~~~~~d 163 (285)
T KOG4210|consen 150 SGSKVLDGNKGEKD 163 (285)
T ss_pred hhccccccccccCc
Confidence 55444444443333
No 171
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=75.33 E-value=2.1 Score=50.44 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=8.1
Q ss_pred CHHHHHHHhhcCcce
Q 013031 249 SHSHLASVLRKSSKL 263 (451)
Q Consensus 249 d~~~I~~ALr~S~~L 263 (451)
|.+-+.+-+.+|..|
T Consensus 222 dde~v~dw~y~sr~l 236 (2365)
T COG5178 222 DDEHVRDWVYTSRDL 236 (2365)
T ss_pred CcHHHHHHHhhcccc
Confidence 344555556666555
No 172
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=75.26 E-value=7.2 Score=31.24 Aligned_cols=50 Identities=10% Similarity=0.103 Sum_probs=38.3
Q ss_pred cccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCC
Q 013031 299 DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWR 374 (451)
Q Consensus 299 d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~ 374 (451)
.++.++|+..+..|+- ..|+. ++ .| -||.|.+.++|+++....++..+..
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~----------------------tG-fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DR----------------------TG-FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cC----------------------CE-EEEEECChHHHHHHHHhcCCCEEEE
Confidence 5788999999999963 44443 21 23 6899999999999999988766543
No 173
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=74.47 E-value=0.69 Score=48.63 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=48.9
Q ss_pred hcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHH
Q 013031 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (451)
Q Consensus 284 ~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekA 363 (451)
+++. |||+|.+|..+....++.++|..||.|...++..- ..+.+|-|+|........|
T Consensus 148 eeir-Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask---------------------~~s~~c~~sf~~qts~~ha 205 (479)
T KOG4676|consen 148 EEIR-RTREVQSLISAAILPESGESFERKGEVSYAHTASK---------------------SRSSSCSHSFRKQTSSKHA 205 (479)
T ss_pred HHHH-hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc---------------------CCCcchhhhHhhhhhHHHH
Confidence 3443 89999999999999999999999999988887421 1145677888888887777
Q ss_pred HHHHc
Q 013031 364 IAELN 368 (451)
Q Consensus 364 v~~Ln 368 (451)
+..++
T Consensus 206 lr~~g 210 (479)
T KOG4676|consen 206 LRSHG 210 (479)
T ss_pred HHhcc
Confidence 77443
No 174
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=73.66 E-value=5.1 Score=43.90 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=25.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHcCCCCCCC
Q 013031 346 NKLHAFVEYESVELAEKAIAELNDEGNWRS 375 (451)
Q Consensus 346 ~KG~AFVEFet~EdAekAv~~Lng~~~~~~ 375 (451)
|.|||||.|-+.+++.++.+++||. .|.+
T Consensus 430 NvGYAFINm~sp~ai~~F~kAFnGk-~W~~ 458 (549)
T KOG4660|consen 430 NVGYAFINMTSPEAIIRFYKAFNGK-KWEK 458 (549)
T ss_pred ccceeEEeecCHHHHHHHHHHHcCC-chhh
Confidence 4699999999999999999999995 4553
No 175
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=72.22 E-value=19 Score=28.89 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=34.6
Q ss_pred cccHHHHHHHHhcCCc-----eEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCC
Q 013031 299 DHCHQNLMKIFSAVGS-----VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNW 373 (451)
Q Consensus 299 d~t~e~L~e~Fs~fG~-----V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~ 373 (451)
.++..+|..++...+. |-.|+|. ..|+||+-... .|+++++.|++..+.
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~-------------------------~~~S~vev~~~-~a~~v~~~l~~~~~~ 65 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF-------------------------DNFSFVEVPEE-VAEKVLEALNGKKIK 65 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE--------------------------SS-EEEEE-TT--HHHHHHHHTT--SS
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe-------------------------eeEEEEEECHH-HHHHHHHHhcCCCCC
Confidence 4667788888877644 4566662 34799998875 789999999999988
Q ss_pred CCceEEEEe
Q 013031 374 RSGLRVRLM 382 (451)
Q Consensus 374 ~~gLrV~l~ 382 (451)
++.++|+.+
T Consensus 66 gk~v~ve~A 74 (74)
T PF03880_consen 66 GKKVRVERA 74 (74)
T ss_dssp S----EEE-
T ss_pred CeeEEEEEC
Confidence 888988764
No 176
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=71.65 E-value=12 Score=38.37 Aligned_cols=63 Identities=22% Similarity=0.176 Sum_probs=45.7
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
+.-|-|-||+..- ..-|...|++||+|.+...-+ +-.+-+|.|.++-+|+||+. .
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~-----------------------ngNwMhirYssr~~A~KALs-k 251 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPS-----------------------NGNWMHIRYSSRTHAQKALS-K 251 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecCC-----------------------CCceEEEEecchhHHHHhhh-h
Confidence 4457777887643 345677899999998887521 12357899999999999998 5
Q ss_pred cCCCCCCC
Q 013031 368 NDEGNWRS 375 (451)
Q Consensus 368 ng~~~~~~ 375 (451)
|+..+.+.
T Consensus 252 ng~ii~g~ 259 (350)
T KOG4285|consen 252 NGTIIDGD 259 (350)
T ss_pred cCeeeccc
Confidence 77666554
No 177
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=70.00 E-value=3.1 Score=46.39 Aligned_cols=68 Identities=16% Similarity=0.056 Sum_probs=56.0
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
.-||||+|+-..+..+=++.+...+|-|.+.... + |+|.+|...+.+.+|+..+
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~-------------------------~-fgf~~f~~~~~~~ra~r~~ 93 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD-------------------------K-FGFCEFLKHIGDLRASRLL 93 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhh-------------------------h-hcccchhhHHHHHHHHHHh
Confidence 4599999999999999999999999987666431 2 7999999999999999988
Q ss_pred cCCCCCCCceEEEE
Q 013031 368 NDEGNWRSGLRVRL 381 (451)
Q Consensus 368 ng~~~~~~gLrV~l 381 (451)
+...+.+.++.+..
T Consensus 94 t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 94 TELNIDDQKLIENV 107 (668)
T ss_pred cccCCCcchhhccc
Confidence 87777676665554
No 178
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=64.49 E-value=16 Score=37.33 Aligned_cols=90 Identities=13% Similarity=0.155 Sum_probs=63.0
Q ss_pred cccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 285 e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
+-..|.|..+|+..+++.-++..-|-+||.|++|-++....+..+ ..+ .-+.+.+..+-|-+.+.|....
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d--------~~~--~d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSD--------DYN--DDKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccc--------ccc--ccccceEEEEeeechHHHHHHH
Confidence 345788999999999999999999999999999999866532221 110 1123568999999999887665
Q ss_pred HH----HcC--CCCCCCceEEEEeec
Q 013031 365 AE----LND--EGNWRSGLRVRLMLR 384 (451)
Q Consensus 365 ~~----Lng--~~~~~~gLrV~l~~~ 384 (451)
.. |+. ..+.-..|+|.+++=
T Consensus 82 NnvLQrLsEfK~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 82 NNVLQRLSEFKTKLKSESLTLSFVSL 107 (309)
T ss_pred HHHHHHHHHHHHhcCCcceeEEEEEE
Confidence 42 221 123345688888864
No 179
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=60.30 E-value=24 Score=38.93 Aligned_cols=11 Identities=27% Similarity=0.268 Sum_probs=6.4
Q ss_pred CCCCCcccccc
Q 013031 105 HGTGAFHVIPV 115 (451)
Q Consensus 105 ~~~~~~~~~~~ 115 (451)
+.+++..|+|+
T Consensus 256 p~p~~~~ViPI 266 (582)
T PF03276_consen 256 PVPPPQPVIPI 266 (582)
T ss_pred CCCCccccccH
Confidence 33445567777
No 180
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=59.32 E-value=14 Score=45.93 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=4.0
Q ss_pred cccccchhh
Q 013031 234 ISTVASFKK 242 (451)
Q Consensus 234 i~~i~sFkK 242 (451)
+-+++.+-+
T Consensus 1809 ~GVmaGYgn 1817 (2039)
T PRK15319 1809 VGVMASYIN 1817 (2039)
T ss_pred EEEEEEecc
Confidence 444444443
No 181
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=58.55 E-value=4 Score=41.43 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=26.4
Q ss_pred ceEEEEcCCCCc------------ccHHHHHHHHhcCCceEEEEE
Q 013031 288 SRIVVAENLPED------------HCHQNLMKIFSAVGSVKTIRT 320 (451)
Q Consensus 288 ~RTVyV~nLP~d------------~t~e~L~e~Fs~fG~V~~Vri 320 (451)
.-|||..+||-. .+++-|+..|+.||+|.+|.|
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdi 193 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDI 193 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCC
Confidence 458999888731 356789999999999998875
No 182
>PTZ00315 2'-phosphotransferase; Provisional
Probab=57.54 E-value=16 Score=40.70 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=39.8
Q ss_pred hccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcc--eEEe---ecc-cccccCC
Q 013031 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK--LVVS---EDG-KKIKRQN 276 (451)
Q Consensus 224 i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~--LeVs---edg-~kVRR~~ 276 (451)
+..|.+|||.|+.|+...+.+...-+.+.|.++++++++ .+++ +++ .+||-..
T Consensus 398 L~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK~RF~l~~~~~~~~~~IRA~Q 456 (582)
T PTZ00315 398 VPITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSDKQRFKLAYGAADGRLYIRANQ 456 (582)
T ss_pred CCcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCCCCceEEeccCCCCceEEEecc
Confidence 457899999999999888776554578899999998764 6776 344 3576654
No 183
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=52.42 E-value=13 Score=39.99 Aligned_cols=15 Identities=33% Similarity=0.324 Sum_probs=10.9
Q ss_pred ccccccCCCccccCH
Q 013031 204 QVEYYFSDLNLATTD 218 (451)
Q Consensus 204 QvEyYFSD~NL~~D~ 218 (451)
-||||-.+.||.-|.
T Consensus 335 ~VEnq~~~~~~Vi~~ 349 (480)
T KOG2675|consen 335 RVENQENNKNLVIDD 349 (480)
T ss_pred EEeeecCCcceeeee
Confidence 578888888876544
No 184
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=50.61 E-value=20 Score=39.28 Aligned_cols=11 Identities=36% Similarity=0.579 Sum_probs=6.5
Q ss_pred eEEEEcCCCCc
Q 013031 289 RIVVAENLPED 299 (451)
Q Consensus 289 RTVyV~nLP~d 299 (451)
++++|++|++.
T Consensus 520 c~~vVE~Fpes 530 (817)
T KOG1925|consen 520 CSLVVETFPES 530 (817)
T ss_pred HHHHHHhCCcc
Confidence 44566777654
No 185
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=46.46 E-value=42 Score=30.84 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=31.3
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEe
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~ 321 (451)
.....+++.+++..++..++..+|..+|.+..+.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 223 EKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred cccceeeccccccccchhHHHHhccccccceeeecc
Confidence 346689999999999999999999999999777664
No 186
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=45.47 E-value=82 Score=34.98 Aligned_cols=10 Identities=20% Similarity=0.723 Sum_probs=5.6
Q ss_pred HHHHHHhcCC
Q 013031 304 NLMKIFSAVG 313 (451)
Q Consensus 304 ~L~e~Fs~fG 313 (451)
.|..+|+-.|
T Consensus 418 ~l~~vyeiLG 427 (582)
T PF03276_consen 418 HLNRVYEILG 427 (582)
T ss_pred HHHHHHHHhC
Confidence 4556666554
No 187
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=44.11 E-value=28 Score=38.23 Aligned_cols=10 Identities=40% Similarity=0.690 Sum_probs=4.1
Q ss_pred CCCCCCCCCC
Q 013031 42 AKAPEFVPTR 51 (451)
Q Consensus 42 ~~~p~~~p~~ 51 (451)
+..|+.-|-+
T Consensus 196 ~~~~~~~P~~ 205 (817)
T KOG1925|consen 196 ADSPETAPAA 205 (817)
T ss_pred CCCcccChHh
Confidence 3344444433
No 188
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=39.09 E-value=1.2e+02 Score=32.30 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=10.0
Q ss_pred HHHHhhcCcceEEeeccc
Q 013031 253 LASVLRKSSKLVVSEDGK 270 (451)
Q Consensus 253 I~~ALr~S~~LeVsedg~ 270 (451)
...||+....+.-.-||.
T Consensus 294 ~~~Alq~qPvVNavIdg~ 311 (457)
T KOG0559|consen 294 AAYALQDQPVVNAVIDGD 311 (457)
T ss_pred HHHHhhhCcceeeeecCC
Confidence 345777776654444443
No 189
>KOG3423 consensus Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=36.55 E-value=99 Score=29.32 Aligned_cols=94 Identities=14% Similarity=0.270 Sum_probs=48.4
Q ss_pred CCChHHHHHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcC------HHHHHHHhhcCcceEE
Q 013031 192 GLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISS------HSHLASVLRKSSKLVV 265 (451)
Q Consensus 192 ~~~~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d------~~~I~~ALr~S~~LeV 265 (451)
-..+..++.++.||+=|= -+.-|.-..-.+++ -||.-.+ .||++|..- -+.+.+||.-+.
T Consensus 67 ~~~d~~l~efl~qLddYt---P~IPDavt~~yL~~--aGf~~~D-----~rv~RLvsLaAQKfvSDIa~DA~Q~~k---- 132 (176)
T KOG3423|consen 67 TTKDTHLEEFLAQLDDYT---PTIPDAVTDHYLKK--AGFQTSD-----PRVKRLVSLAAQKFVSDIANDALQHSK---- 132 (176)
T ss_pred CCcchHHHHHHHHHhcCC---CCCcHHHHHHHHHh--cCCCcCc-----HHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 345677889999999882 23323322222212 3664333 455555432 145567776553
Q ss_pred eecccccccCCCCcchhhhcccceEEEEcCCCCcccHHHHHHHHhcCC
Q 013031 266 SEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVG 313 (451)
Q Consensus 266 sedg~kVRR~~Pl~e~~~~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG 313 (451)
+|-...+.... +..+.| -+..|.++|......||
T Consensus 133 ------~r~~~~~~~~k-~~~kdk-------K~tLtmeDL~~AL~EyG 166 (176)
T KOG3423|consen 133 ------IRTKTAIGKDK-KQAKDK-------KYTLTMEDLSPALAEYG 166 (176)
T ss_pred ------hcccccccccc-cccccc-------ceeeeHHHHHHHHHHhC
Confidence 22221111111 111111 13468999999999999
No 190
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=35.90 E-value=4.8e+02 Score=26.39 Aligned_cols=8 Identities=0% Similarity=-0.138 Sum_probs=3.2
Q ss_pred CccccccC
Q 013031 177 PGVKDKKE 184 (451)
Q Consensus 177 ~~~~~~~~ 184 (451)
+--|+-.+
T Consensus 253 ~~~fr~~~ 260 (341)
T KOG2893|consen 253 DDRFREGD 260 (341)
T ss_pred cccccccc
Confidence 33444433
No 191
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=35.48 E-value=69 Score=28.28 Aligned_cols=49 Identities=14% Similarity=0.283 Sum_probs=26.1
Q ss_pred EEEEcCCCCc---------ccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHH
Q 013031 290 IVVAENLPED---------HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (451)
Q Consensus 290 TVyV~nLP~d---------~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~E 358 (451)
+++|.|++.+ .+.+.|++.|+.|..++ |+.++.. .++.|+++|+|.+.-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~-------------------~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK-------------------QGHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET-------------------TEEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC-------------------CCCcEEEEEEECCCh
Confidence 6677777543 24578999999998875 4444331 124789999998764
No 192
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=33.86 E-value=21 Score=35.31 Aligned_cols=109 Identities=18% Similarity=0.238 Sum_probs=57.9
Q ss_pred ChHHHHHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhc----CcceEE-eec
Q 013031 194 NDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRK----SSKLVV-SED 268 (451)
Q Consensus 194 ~~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~----S~~LeV-sed 268 (451)
+..+.++|++.++.- .++.+.+ | --+.|.+.-.++...+++..+..|.+. .+.|+. ...++| ..|
T Consensus 15 ~~~~~~~Iv~~~~~~-------~~~~VlE-i-GpG~G~lT~~L~~~~~~v~~vE~d~~~-~~~L~~~~~~~~~~~vi~~D 84 (262)
T PF00398_consen 15 DPNIADKIVDALDLS-------EGDTVLE-I-GPGPGALTRELLKRGKRVIAVEIDPDL-AKHLKERFASNPNVEVINGD 84 (262)
T ss_dssp HHHHHHHHHHHHTCG-------TTSEEEE-E-SSTTSCCHHHHHHHSSEEEEEESSHHH-HHHHHHHCTTCSSEEEEES-
T ss_pred CHHHHHHHHHhcCCC-------CCCEEEE-e-CCCCccchhhHhcccCcceeecCcHhH-HHHHHHHhhhcccceeeecc
Confidence 356667777766543 2222222 1 224555555555445666666666543 333332 233433 344
Q ss_pred ccccccCCCCcchhhhcccceEEEEcCCCCcccHHHHHHHHh--cCCceEEEE
Q 013031 269 GKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFS--AVGSVKTIR 319 (451)
Q Consensus 269 g~kVRR~~Pl~e~~~~e~~~RTVyV~nLP~d~t~e~L~e~Fs--~fG~V~~Vr 319 (451)
...+.....+ .....++|+|||+..+..-|.+++. .||.+..+-
T Consensus 85 ~l~~~~~~~~-------~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l 130 (262)
T PF00398_consen 85 FLKWDLYDLL-------KNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVL 130 (262)
T ss_dssp TTTSCGGGHC-------SSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEE
T ss_pred hhccccHHhh-------cCCceEEEEEecccchHHHHHHHhhcccccccceEE
Confidence 3322222111 2356789999999999999988887 455444443
No 193
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=33.38 E-value=1.6e+02 Score=23.08 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 013031 302 HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (451)
Q Consensus 302 ~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Ln 368 (451)
.++|.+++.++| +...+|. |. +.-+++|+-+++.+.++++.+.+.
T Consensus 36 i~~~~~~~~~~G-a~~~~~s-----Gs----------------G~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMS-----GS----------------GGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEE-----TT----------------SSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecC-----CC----------------CCCCeEEEEECCHHHHHHHHHHHH
Confidence 467888889999 5555552 11 125688999999999999988875
No 194
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.57 E-value=1.2e+02 Score=32.73 Aligned_cols=54 Identities=19% Similarity=0.360 Sum_probs=40.1
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
-.|-|.+||.....++|...|+.||.- ..+| +.. ..-+||-.|++...|..|+.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~k-gfdI---------------------kWv-DdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNK-GFDI---------------------KWV-DDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcC-Ccee---------------------EEe-ecceeEEeecchHHHHHHhh
Confidence 367789999999999999999999751 1111 011 13479999999999988876
No 195
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=31.12 E-value=2.2e+02 Score=21.12 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=27.9
Q ss_pred EEEEcCCCCcccHHHHHHHHhcCCceEEEEEe
Q 013031 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (451)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~ 321 (451)
|+.|.|+.=..+...|++.+...-.|.++.+-
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd 32 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVD 32 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEE
Confidence 67888888888899999999999889999884
No 196
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=29.06 E-value=1.1e+02 Score=25.72 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=34.6
Q ss_pred CCCcccHHHHHHHHhc-CC-ceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 296 LPEDHCHQNLMKIFSA-VG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 296 LP~d~t~e~L~e~Fs~-fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
.+.+.+..+|++.++. || +|.+|+++.-.. + .-=|||.+..-++|......+
T Consensus 28 V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---------------~-----~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 28 VDRRATKPDIKRAVEELFDVKVEKVNTLITPK---------------G-----EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred ECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---------------C-----cEEEEEEeCCCCcHHHHHHhh
Confidence 4457788888877776 55 578887653210 0 112999999998888875544
No 197
>KOG2590 consensus RNA-binding protein LARP/SRO9 and related La domain proteins [Posttranslational modification, protein turnover, chaperones; Translation, ribosomal structure and biogenesis]
Probab=28.74 E-value=24 Score=38.27 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=52.2
Q ss_pred HHHHhhccccccCCCccccCHHHHhhhccCCCC---ceecccccchhhHHHhhcCHHHHHHHhhcCc
Q 013031 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEG---YVPISTVASFKKIKAIISSHSHLASVLRKSS 261 (451)
Q Consensus 198 ~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG---~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~ 261 (451)
..+-.++++|||+-.++.+|.|+..++ +..| +.+++.+.+|.+...++++...+...++.+.
T Consensus 100 ~~~~~k~~s~~~~~~~~~~~~~~~~k~--~~t~~~~~~~~S~~~~s~~~~~~s~n~~~~~~~~~~sa 164 (448)
T KOG2590|consen 100 YSKSDKKKSWPASKPFTPRDSFKGSKP--TNTGNGTFLPISKISSSGPVSGGSANNSNIRGPLKGSA 164 (448)
T ss_pred cccccccccCcccCCCCccccccCCCc--cccCCCccCCCccccccccccCcccccccccCcCCCCC
Confidence 345556999999999999999999875 4555 8999999999999999999888888888743
No 198
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=27.23 E-value=70 Score=32.19 Aligned_cols=31 Identities=29% Similarity=0.313 Sum_probs=22.8
Q ss_pred EEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEe
Q 013031 350 AFVEYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (451)
Q Consensus 350 AFVEFet~EdAekAv~~Lng~~~~~~gLrV~l~ 382 (451)
|||+|++..+|..|++.+.... .+.++|..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeC
Confidence 7999999999999999765443 234555544
No 199
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=25.78 E-value=3.3e+02 Score=21.44 Aligned_cols=45 Identities=24% Similarity=0.363 Sum_probs=37.1
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCC
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet 356 (451)
.++.|.|+.=..+...+++..+...-|..|.+-.+ ++.++|+|++
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~-----------------------~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE-----------------------KGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc-----------------------cCeEEEEEcC
Confidence 47888998888888999999999888999988433 4569999998
No 200
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=25.34 E-value=1.5e+02 Score=24.41 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=36.5
Q ss_pred EEcCCCCcccHHHHHHHHhc-CC-ceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 292 VAENLPEDHCHQNLMKIFSA-VG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 292 yV~nLP~d~t~e~L~e~Fs~-fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
|+=..+.+.+..+|++.++. || +|..|+.+.-.. +.| =|||.+..-++|......+
T Consensus 17 y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-------------------~~K-KA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 17 LTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-------------------GEK-KAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-------------------Cce-EEEEEECCCCcHHHHHHhh
Confidence 33345567888888888876 55 577777643210 001 2999999988888766544
No 201
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=24.48 E-value=31 Score=27.49 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=18.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHc
Q 013031 347 KLHAFVEYESVELAEKAIAELN 368 (451)
Q Consensus 347 KG~AFVEFet~EdAekAv~~Ln 368 (451)
|..+|.-|++.++|..++..+.
T Consensus 44 kL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 44 KLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred hhhhccCCCCHHHHHHHHHHhh
Confidence 4459999999999988887765
No 202
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=24.15 E-value=88 Score=24.95 Aligned_cols=19 Identities=16% Similarity=0.445 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCceEEEEE
Q 013031 302 HQNLMKIFSAVGSVKTIRT 320 (451)
Q Consensus 302 ~e~L~e~Fs~fG~V~~Vri 320 (451)
.++|+++|+..|+|..+-+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 4689999999999988776
No 203
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=24.00 E-value=11 Score=40.37 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=64.2
Q ss_pred cccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 285 e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
..++|.+-+.|+|....++-|..+...||.|+++...-.. . ..-..-|+|.+.+.++.|+
T Consensus 77 kqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~---~-----------------etavvnvty~~~~~~~~ai 136 (584)
T KOG2193|consen 77 KQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTD---S-----------------ETAVVNVTYSAQQQHRQAI 136 (584)
T ss_pred HHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccc---h-----------------HHHHHHHHHHHHHHHHHHH
Confidence 3456779999999999999999999999999988653110 0 0122448999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeccC
Q 013031 365 AELNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~r~ 386 (451)
..||+..+....++|.+.-...
T Consensus 137 ~kl~g~Q~en~~~k~~YiPdeq 158 (584)
T KOG2193|consen 137 HKLNGPQLENQHLKVGYIPDEQ 158 (584)
T ss_pred HhhcchHhhhhhhhcccCchhh
Confidence 9999998888788888775443
No 204
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=23.25 E-value=81 Score=25.94 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=19.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHcC
Q 013031 347 KLHAFVEYESVELAEKAIAELND 369 (451)
Q Consensus 347 KG~AFVEFet~EdAekAv~~Lng 369 (451)
|||.|||=.+.++..+|++.+.+
T Consensus 44 kGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 44 KGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp TSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCCHHHHHHHHhcccc
Confidence 89999999999999999887654
No 205
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=23.07 E-value=59 Score=35.18 Aligned_cols=8 Identities=38% Similarity=0.621 Sum_probs=4.4
Q ss_pred CceEEEEE
Q 013031 313 GSVKTIRT 320 (451)
Q Consensus 313 G~V~~Vri 320 (451)
|+|.+|.|
T Consensus 370 GKvNsItl 377 (480)
T KOG2675|consen 370 GKVNSITL 377 (480)
T ss_pred ceeeeEEe
Confidence 55555554
No 206
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=22.78 E-value=85 Score=30.22 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=49.0
Q ss_pred eEEEEcCCCCcc-----cHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHH
Q 013031 289 RIVVAENLPEDH-----CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (451)
Q Consensus 289 RTVyV~nLP~d~-----t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekA 363 (451)
.++++.++..++ .....+.+|-.|-+....++++ ..+..-|.|.+.+.|..|
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----------------------sfrrvRi~f~~p~~a~~a 67 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----------------------SFRRVRINFSNPEAAADA 67 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----------------------hhceeEEeccChhHHHHH
Confidence 356677776543 2334566777766555444431 145577999999999999
Q ss_pred HHHHcCCCCCCC-ceEEEEeec
Q 013031 364 IAELNDEGNWRS-GLRVRLMLR 384 (451)
Q Consensus 364 v~~Lng~~~~~~-gLrV~l~~~ 384 (451)
...+.+..+.+. .++..++..
T Consensus 68 ~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 68 RIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred HHHhhhcccCCCceEEEEEccC
Confidence 999988887776 566666654
No 207
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=22.23 E-value=56 Score=32.02 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=34.6
Q ss_pred hccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcc--eEEeecccccccCC
Q 013031 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK--LVVSEDGKKIKRQN 276 (451)
Q Consensus 224 i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~--LeVsedg~kVRR~~ 276 (451)
++.|.+||+.++.++...+-.-.-.+.+.|..+++.+++ .++++ .+||-..
T Consensus 52 l~lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~K~Rf~l~~--~~IRA~y 104 (211)
T COG1859 52 LRLDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDDKGRFELKE--GKIRARY 104 (211)
T ss_pred eeeccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCCCceeEecc--cceeecc
Confidence 457899999998888765554333467788788877765 55544 4565543
No 208
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.05 E-value=1.4e+02 Score=23.66 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=24.3
Q ss_pred EEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEee
Q 013031 349 HAFVEYESVELAEKAIAELNDEGNWRSGLRVRLML 383 (451)
Q Consensus 349 ~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~l~~ 383 (451)
+.+|.|.+..+|.+|-+.|+.. |+.++++-
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~-----gi~~~liP 32 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKN-----GIPVRLIP 32 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHC-----CCcEEEeC
Confidence 5899999999999999988753 56666664
No 209
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.81 E-value=4.1e+02 Score=29.66 Aligned_cols=8 Identities=25% Similarity=0.538 Sum_probs=3.3
Q ss_pred HHHHhhcc
Q 013031 198 IQKVLNQV 205 (451)
Q Consensus 198 ~~kI~kQv 205 (451)
+..|++.|
T Consensus 471 w~~~~~~~ 478 (585)
T PRK14950 471 WKQILRDV 478 (585)
T ss_pred HHHHHHHH
Confidence 34444444
No 210
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=21.60 E-value=1.9e+02 Score=29.95 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=22.9
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCc
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGS 314 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~ 314 (451)
.-||++||+.|+...+|+..+.+-|-
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~ 356 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKREC 356 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCC
Confidence 35999999999999999999888764
No 211
>PRK11901 hypothetical protein; Reviewed
Probab=20.98 E-value=1.3e+02 Score=31.37 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=36.3
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEE--EeCCHHHHHHHHHH
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFV--EYESVELAEKAIAE 366 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFV--EFet~EdAekAv~~ 366 (451)
-||-+..+ .+++.|++|-.+++ +..+++.+-. |.++ ..|+.| +|.+.++|+.|++.
T Consensus 246 YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~----------RnGk--------pWYVVvyG~Y~Sr~eAk~Ai~s 303 (327)
T PRK11901 246 YTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETK----------RDGK--------PWYVLVSGNYASSAEAKRAIAT 303 (327)
T ss_pred eEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEE----------ECCc--------eEEEEEecCcCCHHHHHHHHHh
Confidence 35555543 45778888888876 4556654321 2221 222222 69999999999998
Q ss_pred HcC
Q 013031 367 LND 369 (451)
Q Consensus 367 Lng 369 (451)
|-.
T Consensus 304 LPa 306 (327)
T PRK11901 304 LPA 306 (327)
T ss_pred CCH
Confidence 754
No 212
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=20.76 E-value=35 Score=36.18 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=10.8
Q ss_pred CccccccCCCCCCCCCCC
Q 013031 35 SSFSRLNAKAPEFVPTRN 52 (451)
Q Consensus 35 ~~~~~~~~~~p~~~p~~~ 52 (451)
.+.|-++..-+-|+|+-.
T Consensus 312 ~~~s~~~~~~~L~~p~~~ 329 (453)
T KOG2589|consen 312 ASSSELDEEFSLFIPRHK 329 (453)
T ss_pred CCchhhccccceeccccc
Confidence 344556666666777654
No 213
>PRK06545 prephenate dehydrogenase; Validated
Probab=20.36 E-value=2.6e+02 Score=28.97 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=41.8
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCC-ceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
..|||.=-++-=....|..+....| .|++|+|...+. ...|..-+.|.+.+++++|.+.|
T Consensus 291 ~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~-------------------~~~g~~~~~~~~~~~~~~~~~~~ 351 (359)
T PRK06545 291 YDLYVDVPDEPGVIARVTAILGEEGISIENLRILEARE-------------------DIHGVLQISFKNEEDRERAKALL 351 (359)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccC-------------------CcCceEEEEeCCHHHHHHHHHHH
Confidence 4566553222334566767776666 689999865421 01577889999999999999987
Q ss_pred cC
Q 013031 368 ND 369 (451)
Q Consensus 368 ng 369 (451)
..
T Consensus 352 ~~ 353 (359)
T PRK06545 352 EE 353 (359)
T ss_pred Hh
Confidence 63
No 214
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=20.16 E-value=2.1e+02 Score=28.56 Aligned_cols=109 Identities=15% Similarity=0.122 Sum_probs=60.4
Q ss_pred HHHhhccccccCC-CccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhc-Cc--ceEEe-ecccccc
Q 013031 199 QKVLNQVEYYFSD-LNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRK-SS--KLVVS-EDGKKIK 273 (451)
Q Consensus 199 ~kI~kQvEyYFSD-~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~-S~--~LeVs-edg~kVR 273 (451)
...++-++-| +| +++.. -|+.+- --.|||+--.-...+++=+.+.... .+++.|++ .. .+.|+ -|+..-+
T Consensus 122 ~~f~~l~~~f-~d~adFl~-VYI~EA--HpsDgW~~~~~~~~i~qh~sledR~-~aA~~l~~~~~~~pi~vD~mdN~~~~ 196 (237)
T PF00837_consen 122 DAFKRLVEDF-SDVADFLI-VYIEEA--HPSDGWAFGNNPYEIPQHRSLEDRL-RAAKLLKEEFPQCPIVVDTMDNNFNK 196 (237)
T ss_pred HHHHHHHHHh-hhhhheeh-hhHhhh--CcCCCccCCCCceeecCCCCHHHHH-HHHHHHHhhCCCCCEEEEccCCHHHH
Confidence 3444444444 33 33332 455554 3478998655544555544443222 23333332 22 24454 3333444
Q ss_pred cCCCCcchhhhcccceEEEEcCC-CCcccHHHHHHHHhcC
Q 013031 274 RQNPLTESDLEELQSRIVVAENL-PEDHCHQNLMKIFSAV 312 (451)
Q Consensus 274 R~~Pl~e~~~~e~~~RTVyV~nL-P~d~t~e~L~e~Fs~f 312 (451)
....+++.-.--.+.+.+|.++. |+....+||+++.++|
T Consensus 197 ~YgA~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 197 AYGALPERLYIIQDGKVVYKGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred HhCCCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence 44566665433346789999997 5778999999999876
Done!