Query 013031
Match_columns 451
No_of_seqs 319 out of 2052
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 20:55:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2voo_A Lupus LA protein; RNA-b 100.0 5.9E-39 2E-43 300.5 12.7 172 193-384 8-186 (193)
2 1s29_A LA protein; winged heli 100.0 1.7E-29 5.8E-34 211.4 4.5 89 191-279 4-92 (92)
3 2cqk_A C-MPL binding protein; 99.9 4.7E-27 1.6E-31 199.5 3.8 85 193-279 10-94 (101)
4 4fxv_A ELAV-like protein 1; RN 99.7 9.5E-18 3.2E-22 140.4 9.8 80 287-383 18-97 (99)
5 1u6f_A Tcubp1, RNA-binding pro 99.7 2.2E-17 7.6E-22 144.4 11.3 89 284-389 38-126 (139)
6 2dnz_A Probable RNA-binding pr 99.7 7.2E-17 2.5E-21 131.9 13.1 85 287-388 4-88 (95)
7 1whw_A Hypothetical protein ri 99.7 7.1E-17 2.4E-21 133.1 12.0 86 286-388 6-91 (99)
8 2fy1_A RNA-binding motif prote 99.7 8.7E-17 3E-21 137.9 12.9 85 286-388 5-89 (116)
9 2dgs_A DAZ-associated protein 99.7 1E-16 3.5E-21 132.3 12.7 85 286-388 8-92 (99)
10 1x5s_A Cold-inducible RNA-bind 99.7 7.9E-17 2.7E-21 133.5 12.0 85 287-388 11-95 (102)
11 3s8s_A Histone-lysine N-methyl 99.7 4E-17 1.4E-21 139.4 9.7 82 287-385 5-86 (110)
12 1x5u_A Splicing factor 3B subu 99.7 8.5E-17 2.9E-21 134.0 11.1 86 286-388 13-98 (105)
13 2dgp_A Bruno-like 4, RNA bindi 99.7 1.3E-16 4.4E-21 133.1 11.7 86 285-387 10-98 (106)
14 1x5t_A Splicing factor 3B subu 99.7 5.2E-17 1.8E-21 133.0 9.1 85 287-388 4-89 (96)
15 3ex7_B RNA-binding protein 8A; 99.7 1.2E-16 4.2E-21 137.4 11.5 86 286-388 20-105 (126)
16 1h2v_Z 20 kDa nuclear CAP bind 99.7 7.2E-17 2.5E-21 144.2 10.3 94 286-396 37-130 (156)
17 3bs9_A Nucleolysin TIA-1 isofo 99.7 8.9E-17 3E-21 129.1 9.8 82 287-385 5-86 (87)
18 1p27_B RNA-binding protein 8A; 99.7 1.8E-16 6.2E-21 132.2 11.8 84 286-386 21-104 (106)
19 2cph_A RNA binding motif prote 99.7 2.4E-16 8.1E-21 131.5 12.0 86 286-388 13-100 (107)
20 2dgo_A Cytotoxic granule-assoc 99.7 2.5E-16 8.4E-21 133.5 12.3 86 286-388 13-98 (115)
21 2lxi_A RNA-binding protein 10; 99.7 2.1E-17 7.2E-22 135.9 5.2 81 288-385 1-83 (91)
22 2cqb_A Peptidyl-prolyl CIS-tra 99.7 7.3E-17 2.5E-21 133.7 8.5 85 287-388 11-95 (102)
23 2dnm_A SRP46 splicing factor; 99.7 1.4E-16 4.8E-21 132.4 10.2 85 286-387 11-95 (103)
24 2cqd_A RNA-binding region cont 99.7 2.3E-16 7.9E-21 134.0 11.1 83 285-385 14-96 (116)
25 3ns6_A Eukaryotic translation 99.7 7.6E-17 2.6E-21 134.5 7.8 82 287-385 5-93 (100)
26 2d9p_A Polyadenylate-binding p 99.7 2.1E-16 7.3E-21 131.3 10.4 84 286-388 13-96 (103)
27 2adc_A Polypyrimidine tract-bi 99.7 5.1E-16 1.7E-20 146.8 14.3 75 288-384 151-227 (229)
28 3md1_A Nuclear and cytoplasmic 99.7 2.5E-16 8.6E-21 125.3 10.1 80 289-385 2-81 (83)
29 2x1f_A MRNA 3'-END-processing 99.7 2E-16 7E-21 130.0 9.9 82 288-386 2-83 (96)
30 2do4_A Squamous cell carcinoma 99.7 1.9E-16 6.6E-21 130.9 9.7 85 285-387 14-98 (100)
31 1x4a_A Splicing factor, argini 99.7 2.6E-16 8.9E-21 132.3 10.5 82 286-387 20-101 (109)
32 4f25_A Polyadenylate-binding p 99.7 1.4E-16 4.7E-21 136.1 8.9 81 288-387 5-85 (115)
33 3p5t_L Cleavage and polyadenyl 99.7 6.6E-17 2.3E-21 131.8 6.5 81 289-386 2-84 (90)
34 2cq0_A Eukaryotic translation 99.7 1.7E-16 5.7E-21 132.0 9.1 86 286-388 13-98 (103)
35 4a8x_A RNA-binding protein wit 99.7 1.4E-16 4.7E-21 128.0 8.2 83 287-385 3-85 (88)
36 1wi8_A EIF-4B, eukaryotic tran 99.7 2.3E-16 7.9E-21 131.5 9.9 84 287-388 14-97 (104)
37 1x4h_A RNA-binding protein 28; 99.7 2.8E-16 9.5E-21 131.9 10.4 85 286-387 13-103 (111)
38 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.4E-16 1.1E-20 130.1 10.7 83 286-387 13-95 (103)
39 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.6E-16 5.5E-21 127.0 8.5 79 287-382 6-84 (85)
40 1oo0_B CG8781-PA, drosophila Y 99.7 3.1E-16 1.1E-20 131.8 10.6 85 286-387 24-108 (110)
41 2dnh_A Bruno-like 5, RNA bindi 99.7 5.5E-16 1.9E-20 129.0 11.9 84 287-388 14-100 (105)
42 2cpe_A RNA-binding protein EWS 99.7 1.9E-16 6.4E-21 133.8 9.1 87 285-388 12-106 (113)
43 2dnq_A RNA-binding protein 4B; 99.7 6.4E-16 2.2E-20 125.6 11.8 78 286-388 6-83 (90)
44 2cpz_A CUG triplet repeat RNA- 99.7 2.1E-16 7.2E-21 134.1 9.1 85 286-387 23-107 (115)
45 1wex_A Hypothetical protein (r 99.7 6E-16 2E-20 131.3 11.8 79 287-388 14-94 (104)
46 1s79_A Lupus LA protein; RRM, 99.7 3.7E-16 1.3E-20 131.9 10.0 81 285-384 8-88 (103)
47 2cq4_A RNA binding motif prote 99.7 8.9E-17 3E-21 136.2 6.1 86 284-387 21-106 (114)
48 2cq3_A RNA-binding protein 9; 99.6 8.6E-16 2.9E-20 127.6 11.8 84 286-388 13-96 (103)
49 2lkz_A RNA-binding protein 5; 99.6 1.4E-16 4.8E-21 133.0 6.8 80 287-383 8-93 (95)
50 2cpf_A RNA binding motif prote 99.6 2.3E-16 7.9E-21 129.8 8.0 87 287-387 4-90 (98)
51 2la6_A RNA-binding protein FUS 99.6 5.4E-16 1.8E-20 128.2 10.2 80 286-382 11-98 (99)
52 1sjq_A Polypyrimidine tract-bi 99.6 2.2E-16 7.6E-21 134.9 8.0 79 287-388 15-95 (105)
53 3ucg_A Polyadenylate-binding p 99.6 2.4E-16 8.3E-21 127.0 7.7 81 286-384 4-84 (89)
54 2do0_A HnRNP M, heterogeneous 99.6 9E-16 3.1E-20 129.6 11.5 84 287-388 14-97 (114)
55 2dgu_A Heterogeneous nuclear r 99.6 6.1E-16 2.1E-20 128.9 10.3 77 287-388 10-86 (103)
56 2jrs_A RNA-binding protein 39; 99.6 6E-16 2E-20 131.1 10.1 83 286-385 24-106 (108)
57 1x4d_A Matrin 3; structural ge 99.6 3.3E-16 1.1E-20 132.8 8.4 76 287-385 14-92 (102)
58 1whx_A Hypothetical protein ri 99.6 6.1E-16 2.1E-20 131.6 10.1 79 286-387 8-86 (111)
59 2e5h_A Zinc finger CCHC-type a 99.6 3.3E-16 1.1E-20 127.7 8.0 79 287-382 15-93 (94)
60 2ywk_A Putative RNA-binding pr 99.6 4E-16 1.4E-20 127.4 8.5 80 286-383 14-93 (95)
61 2kxn_B Transformer-2 protein h 99.6 4.8E-16 1.6E-20 136.1 9.5 84 286-386 44-127 (129)
62 2cqc_A Arginine/serine-rich sp 99.6 3.5E-16 1.2E-20 127.5 8.1 80 287-383 14-93 (95)
63 3r27_A HnRNP L, heterogeneous 99.6 5.2E-16 1.8E-20 131.5 9.4 75 287-384 20-96 (100)
64 2dnp_A RNA-binding protein 14; 99.6 5.6E-16 1.9E-20 125.9 9.2 78 286-388 7-84 (90)
65 2khc_A Testis-specific RNP-typ 99.6 3.3E-16 1.1E-20 133.3 8.1 81 285-382 37-117 (118)
66 2dhg_A TRNA selenocysteine ass 99.6 6.6E-16 2.2E-20 128.4 9.7 83 287-387 8-92 (104)
67 2kvi_A Nuclear polyadenylated 99.6 8.3E-16 2.8E-20 126.7 10.2 77 286-387 8-85 (96)
68 1p1t_A Cleavage stimulation fa 99.6 2.7E-16 9.3E-21 130.5 7.2 84 287-387 7-90 (104)
69 2ad9_A Polypyrimidine tract-bi 99.6 7.7E-16 2.6E-20 134.3 10.3 79 287-388 30-110 (119)
70 2dng_A Eukaryotic translation 99.6 7.3E-16 2.5E-20 128.3 9.8 82 287-387 14-95 (103)
71 2div_A TRNA selenocysteine ass 99.6 4.8E-16 1.7E-20 128.1 8.6 81 287-384 8-93 (99)
72 2dgt_A RNA-binding protein 30; 99.6 9.1E-16 3.1E-20 125.2 10.0 77 286-387 8-84 (92)
73 2cpj_A Non-POU domain-containi 99.6 9.9E-16 3.4E-20 126.6 9.9 79 286-387 13-91 (99)
74 1x4b_A Heterogeneous nuclear r 99.6 5.1E-16 1.8E-20 131.9 8.3 84 286-387 25-108 (116)
75 2kn4_A Immunoglobulin G-bindin 99.6 2.4E-15 8.1E-20 134.0 12.8 86 286-388 68-153 (158)
76 2dgv_A HnRNP M, heterogeneous 99.6 1.4E-15 4.6E-20 123.6 10.2 81 287-386 7-87 (92)
77 2dgx_A KIAA0430 protein; RRM d 99.6 1.1E-15 3.7E-20 126.2 9.7 81 287-387 8-92 (96)
78 3ulh_A THO complex subunit 4; 99.6 1.1E-15 3.7E-20 127.7 9.8 79 287-383 28-106 (107)
79 1x4g_A Nucleolysin TIAR; struc 99.6 1E-15 3.5E-20 128.8 9.7 80 285-387 22-101 (109)
80 2hvz_A Splicing factor, argini 99.6 2E-15 6.9E-20 125.0 11.1 78 289-388 1-78 (101)
81 2jwn_A Embryonic polyadenylate 99.6 6.3E-16 2.1E-20 132.6 8.2 84 284-385 32-115 (124)
82 3n9u_C Cleavage and polyadenyl 99.6 7.1E-16 2.4E-20 139.6 8.8 82 287-385 54-137 (156)
83 2cq1_A PTB-like protein L; RRM 99.6 1.5E-15 5.1E-20 128.2 10.2 79 287-388 14-94 (101)
84 3s7r_A Heterogeneous nuclear r 99.6 8.3E-16 2.8E-20 123.8 8.0 80 285-382 8-87 (87)
85 2dh8_A DAZ-associated protein 99.6 4.4E-16 1.5E-20 129.8 6.6 85 286-388 14-98 (105)
86 1why_A Hypothetical protein ri 99.6 2.2E-15 7.5E-20 124.0 10.5 76 287-385 16-93 (97)
87 2m2b_A RNA-binding protein 10; 99.6 5.5E-16 1.9E-20 135.2 7.2 82 286-385 21-108 (131)
88 2dis_A Unnamed protein product 99.6 3E-15 1E-19 125.4 11.2 83 287-386 7-93 (109)
89 1x4c_A Splicing factor, argini 99.6 2.3E-15 7.9E-20 126.8 10.5 78 287-388 14-96 (108)
90 2rs2_A Musashi-1, RNA-binding 99.6 1E-15 3.4E-20 129.7 8.3 84 286-387 23-106 (109)
91 1uaw_A Mouse-musashi-1; RNP-ty 99.6 5.9E-16 2E-20 121.5 6.4 76 289-382 1-76 (77)
92 2krb_A Eukaryotic translation 99.6 7.6E-16 2.6E-20 123.0 7.0 73 288-379 1-80 (81)
93 2err_A Ataxin-2-binding protei 99.6 1E-15 3.4E-20 129.6 8.1 82 285-385 26-107 (109)
94 2wbr_A GW182, gawky, LD47780P; 99.6 8.7E-16 3E-20 127.6 7.4 73 288-383 7-79 (89)
95 1x5o_A RNA binding motif, sing 99.6 2.2E-15 7.6E-20 127.4 10.1 81 286-384 23-111 (114)
96 2e5j_A Methenyltetrahydrofolat 99.6 1.9E-15 6.6E-20 124.5 9.5 78 287-386 18-95 (97)
97 2ki2_A SS-DNA binding protein 99.6 4.3E-16 1.5E-20 126.2 5.5 81 289-387 2-82 (90)
98 2kt5_A RNA and export factor-b 99.6 3.2E-15 1.1E-19 128.6 11.0 84 286-387 33-116 (124)
99 2lcw_A RNA-binding protein FUS 99.4 5.9E-17 2E-21 137.9 0.0 86 286-388 5-98 (116)
100 2cpi_A CCR4-NOT transcription 99.6 8.3E-16 2.9E-20 130.3 6.9 87 286-386 13-102 (111)
101 3md3_A Nuclear and cytoplasmic 99.6 3.6E-15 1.2E-19 131.1 10.9 116 249-383 50-165 (166)
102 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.1E-15 3.8E-20 127.1 7.2 81 286-385 17-98 (100)
103 2cqp_A RNA-binding protein 12; 99.6 7.2E-16 2.5E-20 126.8 6.0 81 287-384 14-94 (98)
104 1x4f_A Matrin 3; structural ge 99.6 1.2E-15 4.1E-20 131.7 7.6 78 287-387 24-104 (112)
105 2mss_A Protein (musashi1); RNA 99.6 1.4E-15 4.7E-20 119.2 7.3 75 290-382 1-75 (75)
106 2lea_A Serine/arginine-rich sp 99.6 1.6E-15 5.4E-20 133.6 8.5 85 286-387 45-129 (135)
107 2cqg_A TDP-43, TAR DNA-binding 99.6 2.7E-15 9.1E-20 124.7 9.3 83 286-387 13-95 (103)
108 1x4e_A RNA binding motif, sing 99.6 6.4E-16 2.2E-20 123.9 5.2 76 287-379 4-79 (85)
109 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.8E-15 6.3E-20 131.5 8.4 80 286-382 61-140 (140)
110 1rk8_A CG8781-PA, CG8781-PA pr 99.6 2.9E-15 9.8E-20 135.5 10.0 86 286-388 70-155 (165)
111 2ytc_A PRE-mRNA-splicing facto 99.6 2E-15 6.8E-20 120.8 7.9 74 286-382 10-84 (85)
112 2ek1_A RNA-binding protein 12; 99.6 7.6E-16 2.6E-20 125.8 5.5 80 287-383 14-93 (95)
113 2cpd_A Apobec-1 stimulating pr 99.6 4.3E-15 1.5E-19 122.7 9.9 75 287-386 14-90 (99)
114 1wez_A HnRNP H', FTP-3, hetero 99.6 2.2E-15 7.6E-20 126.6 8.3 79 286-384 13-91 (102)
115 2la4_A Nuclear and cytoplasmic 99.6 1.4E-15 4.9E-20 125.9 6.9 75 287-384 26-100 (101)
116 2jvo_A Nucleolar protein 3; nu 99.6 2.2E-15 7.6E-20 127.7 8.1 79 284-387 27-105 (108)
117 1l3k_A Heterogeneous nuclear r 99.6 4E-15 1.4E-19 135.0 10.2 85 287-389 103-187 (196)
118 2xnq_A Nuclear polyadenylated 99.6 4.5E-15 1.5E-19 123.2 9.6 74 286-384 20-94 (97)
119 1fj7_A Nucleolin RBD1, protein 99.6 9.4E-16 3.2E-20 127.0 5.5 84 285-387 14-97 (101)
120 2cqh_A IGF-II mRNA-binding pro 99.6 2.3E-15 7.8E-20 122.8 7.6 78 287-388 7-86 (93)
121 3lqv_A PRE-mRNA branch site pr 99.6 6.1E-15 2.1E-19 124.8 10.4 80 287-386 7-86 (115)
122 2i2y_A Fusion protein consists 99.6 2.9E-15 1E-19 132.9 8.7 78 285-384 70-147 (150)
123 2cpy_A RNA-binding protein 12; 99.6 1.8E-15 6.2E-20 128.8 6.6 82 286-386 13-95 (114)
124 4f02_A Polyadenylate-binding p 99.6 4.1E-15 1.4E-19 139.1 9.7 117 249-386 66-182 (213)
125 2fc9_A NCL protein; structure 99.6 3.9E-15 1.3E-19 123.2 8.4 81 286-387 13-93 (101)
126 2cpx_A Hypothetical protein FL 99.6 7.6E-15 2.6E-19 124.0 10.4 81 287-388 24-108 (115)
127 1wg5_A Heterogeneous nuclear r 99.6 9E-15 3.1E-19 122.5 10.6 79 287-384 14-93 (104)
128 2jvr_A Nucleolar protein 3; RN 99.6 2.7E-15 9.2E-20 128.9 7.3 78 287-385 27-105 (111)
129 1wf1_A RNA-binding protein RAL 99.6 4.8E-15 1.7E-19 124.9 8.7 73 287-384 26-99 (110)
130 2nlw_A Eukaryotic translation 99.6 2.9E-15 9.9E-20 125.8 7.3 79 287-384 14-99 (105)
131 3nmr_A Cugbp ELAV-like family 99.6 7.6E-15 2.6E-19 130.3 10.4 80 286-383 93-175 (175)
132 2qfj_A FBP-interacting repress 99.6 5.6E-15 1.9E-19 136.0 9.7 85 286-387 123-207 (216)
133 2fc8_A NCL protein; structure 99.6 5.3E-15 1.8E-19 122.5 8.5 82 286-387 13-94 (102)
134 2a3j_A U1 small nuclear ribonu 99.6 8.4E-15 2.9E-19 128.6 10.1 80 287-386 28-111 (127)
135 1b7f_A Protein (SXL-lethal pro 99.6 1.8E-14 6.2E-19 127.3 12.2 113 249-382 54-168 (168)
136 2dgw_A Probable RNA-binding pr 99.6 6E-15 2.1E-19 119.9 8.2 80 286-385 8-87 (91)
137 3q2s_C Cleavage and polyadenyl 99.6 3.8E-15 1.3E-19 142.6 8.1 81 287-384 67-149 (229)
138 1fxl_A Paraneoplastic encephal 99.6 2.6E-14 8.8E-19 125.7 12.6 113 249-382 53-167 (167)
139 2g4b_A Splicing factor U2AF 65 99.6 1.1E-14 3.7E-19 129.5 10.0 112 249-382 60-171 (172)
140 1iqt_A AUF1, heterogeneous nuc 99.6 2.9E-15 9.8E-20 117.1 5.5 75 290-382 1-75 (75)
141 3beg_B Splicing factor, argini 99.6 1.2E-14 4.2E-19 124.1 9.7 77 287-387 15-96 (115)
142 2db1_A Heterogeneous nuclear r 99.5 2.8E-15 9.6E-20 128.8 5.6 81 286-385 15-98 (118)
143 2hgn_A Heterogeneous nuclear r 99.5 2.6E-15 8.8E-20 134.0 5.0 82 286-387 44-125 (139)
144 2e44_A Insulin-like growth fac 99.5 2E-14 7E-19 117.6 9.6 78 287-385 14-92 (96)
145 1x5p_A Negative elongation fac 99.5 2.1E-14 7.1E-19 118.3 9.5 76 287-387 14-89 (97)
146 2lmi_A GRSF-1, G-rich sequence 99.5 4.5E-15 1.5E-19 125.0 5.5 81 286-385 9-92 (107)
147 1nu4_A U1A RNA binding domain; 99.5 8.5E-15 2.9E-19 119.9 6.7 81 286-386 6-90 (97)
148 2hgl_A HNRPF protein, heteroge 99.5 5.3E-15 1.8E-19 131.4 5.8 79 287-384 43-124 (136)
149 3pgw_S U1-70K; protein-RNA com 99.5 6.3E-14 2.1E-18 146.3 14.6 84 287-387 101-184 (437)
150 1fjc_A Nucleolin RBD2, protein 99.5 6.3E-15 2.1E-19 120.7 5.6 80 285-386 13-92 (96)
151 4f02_A Polyadenylate-binding p 99.5 2E-14 6.9E-19 134.4 9.8 81 287-384 14-94 (213)
152 2hzc_A Splicing factor U2AF 65 99.5 1.7E-14 5.6E-19 115.7 7.9 70 287-380 5-85 (87)
153 1wel_A RNA-binding protein 12; 99.5 3.7E-15 1.3E-19 128.5 4.3 81 287-385 24-104 (124)
154 2yh0_A Splicing factor U2AF 65 99.5 3.1E-14 1E-18 129.3 10.4 85 286-387 112-196 (198)
155 2cjk_A Nuclear polyadenylated 99.5 1.9E-14 6.4E-19 127.3 8.7 81 287-385 86-166 (167)
156 2dnn_A RNA-binding protein 12; 99.5 1.2E-14 4.3E-19 124.2 7.1 78 287-384 15-92 (109)
157 2e5g_A U6 snRNA-specific termi 99.5 2.3E-14 7.9E-19 117.4 8.3 79 287-388 7-85 (94)
158 1fxl_A Paraneoplastic encephal 99.5 3.5E-14 1.2E-18 124.8 9.8 80 288-384 2-81 (167)
159 2xs2_A Deleted in azoospermia- 99.5 1.2E-14 4E-19 120.6 6.2 82 286-387 7-88 (102)
160 3pgw_A U1-A; protein-RNA compl 99.5 2.6E-14 8.8E-19 138.0 9.5 75 287-383 206-281 (282)
161 1sjr_A Polypyrimidine tract-bi 99.5 6.1E-14 2.1E-18 128.7 11.3 77 288-385 46-124 (164)
162 2f3j_A RNA and export factor b 99.5 4.6E-14 1.6E-18 130.0 10.2 81 287-385 87-167 (177)
163 2cq2_A Hypothetical protein LO 99.5 1.9E-14 6.6E-19 124.6 6.9 76 287-385 24-106 (114)
164 1b7f_A Protein (SXL-lethal pro 99.5 4.9E-14 1.7E-18 124.5 8.8 81 287-384 2-82 (168)
165 1wg1_A KIAA1579 protein, homol 99.5 2.6E-14 8.9E-19 115.9 6.5 75 287-385 4-78 (88)
166 3egn_A RNA-binding protein 40; 99.5 2.7E-14 9.2E-19 125.7 6.8 82 287-388 44-133 (143)
167 3md3_A Nuclear and cytoplasmic 99.5 6E-14 2.1E-18 123.2 9.0 78 289-384 1-78 (166)
168 3tyt_A Heterogeneous nuclear r 99.5 5.7E-14 1.9E-18 131.9 9.3 77 287-385 3-80 (205)
169 1fje_B Nucleolin RBD12, protei 99.5 8.4E-14 2.9E-18 124.5 9.9 112 249-385 63-174 (175)
170 2qfj_A FBP-interacting repress 99.5 9.8E-14 3.4E-18 127.7 10.5 81 286-383 26-106 (216)
171 2bz2_A Negative elongation fac 99.5 1E-13 3.5E-18 120.1 9.5 91 271-387 23-113 (121)
172 3nmr_A Cugbp ELAV-like family 99.5 1.6E-13 5.5E-18 121.7 10.7 82 287-383 2-86 (175)
173 3zzy_A Polypyrimidine tract-bi 99.5 1.1E-13 3.8E-18 122.5 8.9 74 289-384 29-105 (130)
174 3d2w_A TAR DNA-binding protein 99.5 1.3E-13 4.3E-18 112.9 8.5 72 286-383 9-80 (89)
175 2hgm_A HNRPF protein, heteroge 99.5 5.6E-14 1.9E-18 123.5 6.8 78 287-384 41-120 (126)
176 1l3k_A Heterogeneous nuclear r 99.5 1.2E-13 3.9E-18 125.3 9.0 82 286-385 11-92 (196)
177 1wf0_A TDP-43, TAR DNA-binding 99.5 1.1E-13 3.9E-18 111.8 7.7 71 287-383 4-74 (88)
178 2e5i_A Heterogeneous nuclear r 99.5 2E-13 6.9E-18 119.7 9.8 74 289-385 26-102 (124)
179 2dnl_A Cytoplasmic polyadenyla 99.5 8.4E-14 2.9E-18 118.5 7.0 67 287-368 7-73 (114)
180 1qm9_A Polypyrimidine tract-bi 99.4 5.2E-13 1.8E-17 122.1 12.5 75 288-384 120-196 (198)
181 2dha_A FLJ20171 protein; RRM d 99.4 4E-14 1.4E-18 123.7 4.8 79 287-384 22-104 (123)
182 3u1l_A PRE-mRNA-splicing facto 99.4 2.7E-13 9.2E-18 131.4 10.1 79 285-386 131-230 (240)
183 2diu_A KIAA0430 protein; struc 99.4 3E-13 1E-17 113.7 8.4 71 290-387 11-86 (96)
184 2pe8_A Splicing factor 45; RRM 99.4 5.5E-13 1.9E-17 113.1 10.0 83 286-384 6-93 (105)
185 1qm9_A Polypyrimidine tract-bi 99.4 3.9E-13 1.3E-17 122.9 9.8 77 287-385 2-79 (198)
186 2adc_A Polypyrimidine tract-bi 99.4 5.3E-13 1.8E-17 126.1 10.8 78 286-385 32-110 (229)
187 2ghp_A U4/U6 snRNA-associated 99.4 2.7E-13 9.3E-18 131.4 8.6 82 286-385 208-291 (292)
188 3pgw_A U1-A; protein-RNA compl 99.4 7.3E-13 2.5E-17 127.8 10.6 81 286-386 7-91 (282)
189 2cjk_A Nuclear polyadenylated 99.4 3.3E-13 1.1E-17 119.2 7.2 78 287-383 2-79 (167)
190 3smz_A Protein raver-1, ribonu 99.4 5.3E-13 1.8E-17 128.8 9.2 84 286-387 182-266 (284)
191 3smz_A Protein raver-1, ribonu 99.4 1.7E-12 5.9E-17 125.2 11.9 83 287-386 94-176 (284)
192 2j8a_A Histone-lysine N-methyl 99.4 3.6E-13 1.2E-17 119.3 5.2 78 289-383 3-94 (136)
193 3sde_A Paraspeckle component 1 99.3 2.1E-12 7.2E-17 124.4 9.9 82 287-386 95-180 (261)
194 3sde_A Paraspeckle component 1 99.3 1.9E-12 6.5E-17 124.7 9.3 75 286-383 20-94 (261)
195 2dit_A HIV TAT specific factor 99.3 4.8E-12 1.6E-16 107.3 9.9 79 287-386 14-103 (112)
196 2g4b_A Splicing factor U2AF 65 99.3 3.2E-12 1.1E-16 113.4 8.1 73 287-383 3-86 (172)
197 2ghp_A U4/U6 snRNA-associated 99.3 6.2E-12 2.1E-16 121.8 9.9 82 287-386 116-198 (292)
198 3v4m_A Splicing factor U2AF 65 99.3 6.7E-12 2.3E-16 106.3 8.8 83 287-384 4-96 (105)
199 2yh0_A Splicing factor U2AF 65 99.3 9.5E-12 3.2E-16 112.8 9.9 75 287-385 3-88 (198)
200 3tyt_A Heterogeneous nuclear r 99.3 5.1E-12 1.7E-16 118.6 7.7 75 288-381 123-203 (205)
201 1fje_B Nucleolin RBD12, protei 99.3 1.3E-12 4.5E-17 116.7 2.8 82 285-385 10-91 (175)
202 3ue2_A Poly(U)-binding-splicin 99.2 1.4E-11 4.8E-16 106.8 7.6 85 287-384 19-108 (118)
203 1jmt_A Splicing factor U2AF 35 99.2 5.2E-12 1.8E-16 106.7 4.8 72 293-382 20-103 (104)
204 2d9o_A DNAJ (HSP40) homolog, s 99.2 6.7E-11 2.3E-15 99.7 11.2 67 298-388 27-93 (100)
205 3tht_A Alkylated DNA repair pr 99.2 1.6E-11 5.3E-16 124.8 8.1 74 287-383 17-97 (345)
206 3s6e_A RNA-binding protein 39; 99.1 1.3E-10 4.6E-15 100.1 8.5 77 287-384 6-92 (114)
207 1owx_A Lupus LA protein, SS-B, 98.9 2.6E-09 8.9E-14 93.4 9.1 75 287-384 17-95 (121)
208 2dnr_A Synaptojanin-1; RRM dom 98.8 1.1E-08 3.6E-13 85.2 6.9 61 302-388 29-89 (91)
209 3dxb_A Thioredoxin N-terminall 98.7 3.4E-08 1.2E-12 92.5 8.7 72 300-384 141-212 (222)
210 1ufw_A Synaptojanin 2; RNP dom 98.5 1.1E-07 3.8E-12 79.6 4.6 70 288-383 15-93 (95)
211 2l9w_A U4/U6 snRNA-associated- 97.9 2.7E-05 9.3E-10 66.9 7.0 73 287-382 20-97 (117)
212 2dhx_A Poly (ADP-ribose) polym 96.7 0.0096 3.3E-07 50.4 9.4 70 287-382 7-81 (104)
213 1wey_A Calcipressin 1; structu 96.5 0.0042 1.4E-07 52.7 5.9 73 288-383 5-82 (104)
214 1whv_A Poly(A)-specific ribonu 96.3 0.0077 2.6E-07 50.6 6.6 66 289-384 17-82 (100)
215 1wwh_A Nucleoporin 35, nucleop 96.0 0.023 7.7E-07 49.3 8.2 63 287-374 23-85 (119)
216 3pq1_A Poly(A) RNA polymerase; 95.7 0.0027 9.3E-08 66.7 1.6 58 284-364 49-106 (464)
217 3ctr_A Poly(A)-specific ribonu 95.7 0.0089 3E-07 50.3 4.3 53 290-368 8-60 (101)
218 1uw4_A UPF3X; nonsense mediate 95.7 0.024 8.1E-07 46.9 6.8 69 289-372 2-70 (91)
219 2i2y_A Fusion protein consists 95.1 0.0031 1.1E-07 55.0 -0.4 36 347-383 13-49 (150)
220 2kn4_A Immunoglobulin G-bindin 95.0 0.0033 1.1E-07 55.1 -0.7 28 347-374 13-40 (158)
221 2l08_A Regulator of nonsense t 91.7 0.22 7.5E-06 41.6 5.1 70 288-372 9-78 (97)
222 3htx_A HEN1; HEN1, small RNA m 91.7 0.13 4.4E-06 57.9 4.7 88 193-281 103-209 (950)
223 3d45_A Poly(A)-specific ribonu 88.3 1.2 4.2E-05 47.0 8.7 64 288-381 440-503 (507)
224 2v8f_C MDIA1, profilin IIA; al 87.6 0.36 1.2E-05 30.4 2.4 7 81-87 6-12 (26)
225 3p3d_A Nucleoporin 53; structu 87.0 0.73 2.5E-05 40.5 5.0 82 288-375 7-89 (132)
226 4f25_A Polyadenylate-binding p 76.2 0.88 3E-05 37.6 1.4 18 287-304 96-113 (115)
227 1jh4_B PAIP1, polyadenylate-bi 70.4 2 6.8E-05 27.2 1.6 17 37-53 3-19 (26)
228 1wfx_A Probable RNA 2'-phospho 70.4 1.8 6.2E-05 40.0 2.1 50 224-276 22-75 (186)
229 1d1d_A Protein (capsid protein 66.6 2 6.7E-05 41.9 1.5 28 188-215 31-60 (262)
230 2l4h_A Calcium and integrin-bi 59.3 1.9 6.4E-05 39.2 -0.1 45 193-239 31-83 (214)
231 3fry_A Probable copper-exporti 51.0 52 0.0018 23.9 7.0 55 288-366 6-60 (73)
232 3na8_A Putative dihydrodipicol 50.7 12 0.0004 36.9 4.1 18 147-164 5-22 (315)
233 3a4u_B Multiple coagulation fa 38.1 5.5 0.00019 33.9 -0.6 16 221-236 74-89 (143)
234 2hgm_A HNRPF protein, heteroge 36.4 11 0.00038 32.1 1.1 15 150-164 8-22 (126)
235 3lqv_A PRE-mRNA branch site pr 35.1 6.6 0.00023 31.8 -0.5 21 294-314 89-109 (115)
236 2qrj_A Saccharopine dehydrogen 35.1 20 0.0007 36.6 3.0 18 187-204 36-53 (394)
237 3tla_A MCCF; serine protease, 33.9 8.6 0.00029 38.9 0.0 11 196-206 61-71 (371)
238 4a4j_A Pacszia, cation-transpo 33.8 1.2E+02 0.0039 21.3 6.3 33 289-321 4-36 (69)
239 2yjp_A Putative ABC transporte 33.5 8.8 0.0003 35.7 0.0 9 285-293 161-169 (291)
240 3jrx_A Acetyl-COA carboxylase 32.5 9.4 0.00032 41.0 0.0 15 38-52 447-463 (587)
241 3dxs_X Copper-transporting ATP 32.3 1.4E+02 0.0046 21.3 7.9 56 289-367 4-63 (74)
242 2yjp_A Putative ABC transporte 32.1 9.6 0.00033 35.5 0.0 17 349-365 186-202 (291)
243 3lpe_A Putative transcription 32.0 83 0.0029 25.1 5.7 23 347-369 50-72 (92)
244 3uau_A JLPA, surface-exposed l 31.5 10 0.00034 37.2 0.0 6 363-368 310-315 (379)
245 3uau_A JLPA, surface-exposed l 29.2 12 0.00039 36.8 0.0 6 193-198 29-34 (379)
246 4faj_A PRGZ; substrate binding 29.1 12 0.0004 37.1 0.0 10 304-313 218-227 (564)
247 2oar_A Large-conductance mecha 28.5 12 0.00041 34.2 0.0 13 237-249 47-60 (174)
248 1wuf_A Hypothetical protein LI 28.0 12 0.00041 37.7 -0.1 10 155-164 12-21 (393)
249 2yln_A Putative ABC transporte 27.4 13 0.00044 34.5 0.0 8 286-293 162-169 (283)
250 3fia_A Intersectin-1; EH 1 dom 26.9 14 0.0005 31.5 0.2 11 226-236 77-87 (121)
251 2oar_A Large-conductance mecha 26.7 14 0.00047 33.8 0.0 9 303-311 138-146 (174)
252 2yln_A Putative ABC transporte 26.1 14 0.00048 34.2 0.0 17 349-365 184-200 (283)
253 3cio_A ETK, tyrosine-protein k 25.7 15 0.0005 35.5 0.0 28 355-382 249-276 (299)
254 2g0c_A ATP-dependent RNA helic 25.3 78 0.0027 23.8 4.2 35 348-383 41-75 (76)
255 4g2c_A DYP2; DYE peroxidase, o 25.1 15 0.00052 38.7 0.0 13 235-247 116-128 (493)
256 4axs_A Carbamate kinase; oxido 25.0 15 0.00052 36.6 0.0 13 355-367 230-242 (332)
257 1wue_A Mandelate racemase/muco 24.4 19 0.00065 36.0 0.6 9 156-164 13-21 (386)
258 2es4_D Lipase chaperone; prote 24.3 16 0.00055 36.5 0.0 11 200-210 84-94 (332)
259 1jxh_A Phosphomethylpyrimidine 24.1 16 0.00056 34.6 0.0 11 358-368 178-188 (288)
260 1jr2_A Uroporphyrinogen-III sy 23.6 17 0.00058 34.6 0.0 87 288-384 158-247 (286)
261 2l72_A Tgadf, actin depolymeri 23.4 19 0.00065 31.2 0.3 14 288-301 88-101 (139)
262 3fwy_A Light-independent proto 21.7 19 0.00066 35.2 0.0 7 361-367 237-243 (314)
263 4ec6_A Putative uncharacterize 21.3 19 0.00064 32.5 -0.2 30 197-226 57-88 (161)
264 1jxh_A Phosphomethylpyrimidine 21.3 20 0.00068 34.0 0.0 9 305-313 112-120 (288)
265 4axs_A Carbamate kinase; oxido 20.7 21 0.00071 35.6 0.0 14 352-365 269-282 (332)
266 2l4h_A Calcium and integrin-bi 20.3 21 0.00074 32.0 0.0 19 220-238 96-115 (214)
267 1yx4_A 26S proteasome non-ATPa 20.2 22 0.00074 31.1 0.0 10 193-202 38-47 (132)
268 2px7_A 2-C-methyl-D-erythritol 20.2 22 0.00075 32.6 0.0 9 301-309 120-128 (236)
269 3c3r_A Programmed cell death 6 20.2 22 0.00075 35.8 0.0 7 147-153 9-15 (380)
No 1
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=100.00 E-value=5.9e-39 Score=300.49 Aligned_cols=172 Identities=26% Similarity=0.381 Sum_probs=150.0
Q ss_pred CChHHHHHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcC--cceEEeeccc
Q 013031 193 LNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS--SKLVVSEDGK 270 (451)
Q Consensus 193 ~~~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S--~~LeVsedg~ 270 (451)
-.+++.++|++||||||||+||++|.||+++|.++ +|||+|.+|++|+||+.|+.|.+.|.+||+.| ..|++++++.
T Consensus 8 ~~~~~~~~i~~q~e~yfs~~nl~~D~fl~~~~~~~-~g~V~l~~i~sF~r~k~l~~d~~~I~~Al~~S~~~~lev~ed~~ 86 (193)
T 2voo_A 8 KMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKT 86 (193)
T ss_dssp -CHHHHHHHHHHHHHHTSTTTGGGCHHHHHHHHHT-TTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTCSSCCEEECTTSS
T ss_pred CcHHHHHHHHHHhheecchhhcccCHHHHHHhccc-CCcEEeHHHhhhhHHHHhcCCHHHHHHHHhhcccceEEEecccc
Confidence 34789999999999999999999999999999766 99999999999999999999999999999999 8999999999
Q ss_pred ccccCC--CCcch---hhhcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccC
Q 013031 271 KIKRQN--PLTES---DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFS 345 (451)
Q Consensus 271 kVRR~~--Pl~e~---~~~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~ 345 (451)
+|||.. |+++. ..++...|+|||+|||.++|+++|+++|+.||.|..|+|+++.+ + .
T Consensus 87 ~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~-----------------~ 148 (193)
T 2voo_A 87 KIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-K-----------------A 148 (193)
T ss_dssp EEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-C-----------------C
T ss_pred eEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-C-----------------C
Confidence 999984 34332 22455689999999999999999999999999999999987532 1 1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeec
Q 013031 346 NKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 346 ~KG~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~l~~~ 384 (451)
.||||||+|++.++|++|++.++. .+.|+.|+|.+...
T Consensus 149 ~kG~aFVeF~~~e~A~~A~~~~~~-~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 149 FKGSIFVVFDSIESAKKFVETPGQ-KYKETDLLILFKDD 186 (193)
T ss_dssp EEEEEEEEESSHHHHHHHHHCTTC-EETTEECEEEETTT
T ss_pred cccEEEEEECCHHHHHHHHHhCCC-eECCEEEEEEEhHH
Confidence 389999999999999999987654 77888888886543
No 2
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=99.95 E-value=1.7e-29 Score=211.40 Aligned_cols=89 Identities=35% Similarity=0.610 Sum_probs=85.8
Q ss_pred CCCChHHHHHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcceEEeeccc
Q 013031 191 GGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGK 270 (451)
Q Consensus 191 ~~~~~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~LeVsedg~ 270 (451)
..+++++.++|++||||||||+||++|+||+++|.+++||||||++|++|+|||+|+.|.+.|++||+.|..|+|++||+
T Consensus 4 ~~~~~~~~~~I~~QvEyYFSd~NL~~D~fL~~~m~~~~~G~Vpl~~i~sF~r~k~lt~d~~~i~~al~~S~~lev~edg~ 83 (92)
T 1s29_A 4 MPLSSENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDGL 83 (92)
T ss_dssp SCCCHHHHHHHHHHHHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHHTTCSSEEECTTSS
T ss_pred CCCCHHHHHHHHHHHHhhcchhhhccCHHHHHHhccCCCCCEEhHHHhCChhHHHHcCCHHHHHHHHhhCCeEEEeCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCc
Q 013031 271 KIKRQNPLT 279 (451)
Q Consensus 271 kVRR~~Pl~ 279 (451)
+|||+.|++
T Consensus 84 ~VRR~~PlP 92 (92)
T 1s29_A 84 MVRRRDPLP 92 (92)
T ss_dssp EEEESSCCC
T ss_pred EEeCCCCCC
Confidence 999999875
No 3
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=99.93 E-value=4.7e-27 Score=199.48 Aligned_cols=85 Identities=28% Similarity=0.436 Sum_probs=80.3
Q ss_pred CChHHHHHHhhccccccCCCccccCHHHHhhhccCCCCceecccccchhhHHHhhcCHHHHHHHhhcCcceEEeeccccc
Q 013031 193 LNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKI 272 (451)
Q Consensus 193 ~~~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~VPi~~i~sFkKmK~Lt~d~~~I~~ALr~S~~LeVsedg~kV 272 (451)
..++++++|++||||||||+||++|.||+++| +.||||||++|++|+|||+|+.|.++|++||+.|..|+|++||++|
T Consensus 10 ~~~~l~~~I~~QvEyYFSd~NL~~D~fL~~~m--d~~G~Vpl~~iasF~r~k~lt~d~~~i~~al~~S~~levsedg~kV 87 (101)
T 2cqk_A 10 STEDLKECLKKQLEFCFSRENLSKDLYLISQM--DSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKV 87 (101)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHCHHHHHHS--CTTSCEEHHHHHHCHHHHHHCCCHHHHHHHHHHSSSEEECSSSSEE
T ss_pred CHHHHHHHHHHHHHhhcchhhhccCHHHHHhh--hcCCCEEhHHHhCChHHHHHcCCHHHHHHHHHhCCcEEEcCCCCee
Confidence 45778899999999999999999999999996 7899999999999999999999999999999999999999999999
Q ss_pred ccCCCCc
Q 013031 273 KRQNPLT 279 (451)
Q Consensus 273 RR~~Pl~ 279 (451)
||+.++.
T Consensus 88 Rr~~~~~ 94 (101)
T 2cqk_A 88 RPSHKRC 94 (101)
T ss_dssp EECCSCC
T ss_pred eeCCCCC
Confidence 9998654
No 4
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.73 E-value=9.5e-18 Score=140.38 Aligned_cols=80 Identities=24% Similarity=0.350 Sum_probs=72.5
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
+.++|||+|||.++|+++|+++|++||.|..|+|.+++.+++ .||||||+|++.++|++|++.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-----------------~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGH-----------------SLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCc-----------------ccccEEEEECCHHHHHHHHHH
Confidence 567999999999999999999999999999999987754332 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 013031 367 LNDEGNWRSGLRVRLML 383 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~ 383 (451)
||+..+.++.|+|.++.
T Consensus 81 lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 81 LNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp HTTCEETTEECEEEECC
T ss_pred hCCCEECCEEEEEEEee
Confidence 99999999999999874
No 5
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=144.42 Aligned_cols=89 Identities=21% Similarity=0.302 Sum_probs=78.0
Q ss_pred hcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHH
Q 013031 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (451)
Q Consensus 284 ~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekA 363 (451)
.....++|||+||+.++++++|+++|+.||+|+.|+|++++.+++ .+|||||+|++.++|++|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A 100 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQ-----------------SRGYGFVKFQSGSSAQQA 100 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTE-----------------EEEEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCC-----------------cceEEEEEECCHHHHHHH
Confidence 345678999999999999999999999999999999987653221 389999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeeccCCCC
Q 013031 364 IAELNDEGNWRSGLRVRLMLRRGSKP 389 (451)
Q Consensus 364 v~~Lng~~~~~~gLrV~l~~~r~~k~ 389 (451)
++.||+..++++.|+|+++..+..+.
T Consensus 101 ~~~l~g~~~~g~~l~v~~a~~~~~~~ 126 (139)
T 1u6f_A 101 IAGLNGFNILNKRLKVALAASGHQRP 126 (139)
T ss_dssp HHHTTTEECSSCEEEEEESSCCCCCC
T ss_pred HHHhCCCEECCeEEEEEECCCCCCCC
Confidence 99999999999999999998766653
No 6
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=7.2e-17 Score=131.86 Aligned_cols=85 Identities=21% Similarity=0.207 Sum_probs=75.4
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++++++|+++|++||.|..|++.+++.+++ .+|||||+|++.++|++|++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~~ 66 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGR-----------------SKGYGFITFSDSECARRALEQ 66 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCC-----------------CCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCc-----------------eeeEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987654322 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccCCC
Q 013031 367 LNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~~k 388 (451)
||+..+.++.|+|+++..+...
T Consensus 67 l~g~~~~g~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 67 LNGFELAGRPMRVGHVTERLDG 88 (95)
T ss_dssp HTTCCSSSSCCEEEESSCCCCC
T ss_pred hCCCeeCCcEEEEEEcccccCC
Confidence 9999999999999998765543
No 7
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.1e-17 Score=133.10 Aligned_cols=86 Identities=24% Similarity=0.187 Sum_probs=75.8
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++|+++|+++|+.||.|..|+|..++.+++ .+|||||+|++.++|++|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~ 68 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKK-----------------PKGFAFVTFMFPEHAVKAYA 68 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCC-----------------CCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCC-----------------cCeEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999987653222 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
.||+..+.++.|+|.++..+..+
T Consensus 69 ~l~g~~~~g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 69 EVDGQVFQGRMLHVLPSTIKKEA 91 (99)
T ss_dssp HTTTEESSSCEEEEEECCCCSTT
T ss_pred HhCCCEECCcEEEEEEcCCCccc
Confidence 99999999999999998776554
No 8
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=8.7e-17 Score=137.91 Aligned_cols=85 Identities=13% Similarity=0.202 Sum_probs=75.6
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++|+++|+++|++||.|+.|+|..++ +++ .+|||||+|++.++|++|++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~-----------------~~g~afV~F~~~~~A~~Ai~ 66 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSK-----------------SRGFAFITFENPADAKNAAK 66 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTT-----------------CCCEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCC-----------------cccEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999998764 221 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
.||+..+.++.|+|.++..+...
T Consensus 67 ~l~g~~~~g~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 67 DMNGKSLHGKAIKVEQAKKPSFQ 89 (116)
T ss_dssp HCSSCBCSSSBCEEEECCCSSCS
T ss_pred HhCCCEECCEEEEEEECCCCCCC
Confidence 99999999999999999765544
No 9
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=132.31 Aligned_cols=85 Identities=15% Similarity=0.234 Sum_probs=75.1
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|+.||.|..|+|++++.+++ .+|||||+|++.++|++|++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR-----------------PRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCS-----------------CCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCC-----------------CCceEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999987653322 38999999999999999998
Q ss_pred HHcCCCCCCCceEEEEeeccCCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
||+..+.++.|+|+++..+..+
T Consensus 71 -~~~~~~~g~~l~V~~a~~~~~~ 92 (99)
T 2dgs_A 71 -MHFHDIMGKKVEVKRAEPRDSK 92 (99)
T ss_dssp -HCCCBSSSCBCEEEECCCCCCC
T ss_pred -hCCCEECCeEEEEEECCCCccc
Confidence 9999999999999998765554
No 10
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.9e-17 Score=133.50 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=75.4
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++++++|+++|+.||.|+.|+|+.++.+++ .+|||||+|++.++|++|++.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQR-----------------SRGFGFVTFENIDDAKDAMMA 73 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCS-----------------CCSEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCC-----------------cccEEEEEECCHHHHHHHHHH
Confidence 568999999999999999999999999999999987643221 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccCCC
Q 013031 367 LNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~~k 388 (451)
||+..+.++.|+|.++..+...
T Consensus 74 l~g~~~~g~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 74 MNGKSVDGRQIRVDQAGKSSDN 95 (102)
T ss_dssp HTTCCTTSCCCEEEEEECCCCC
T ss_pred hCCCEECCeEEEEEECCCCCCC
Confidence 9999999999999999765544
No 11
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.70 E-value=4e-17 Score=139.36 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=74.0
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+||++++++++|+++|++||.|+.|+|.+++.+++ .||||||+|++.++|++|++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~-----------------~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRK-----------------HLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCc-----------------eeeEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999988764332 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 013031 367 LNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r 385 (451)
||+..+.++.|+|.++..+
T Consensus 68 lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 68 LHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp HTTCEETTEECEEEECSTT
T ss_pred hCCCEECCeEEEEEECCCC
Confidence 9999999999999988643
No 12
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.5e-17 Score=134.00 Aligned_cols=86 Identities=22% Similarity=0.197 Sum_probs=75.3
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|+.||.|..|+|+.++.+++ .+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~ 75 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQ-----------------HQGYGFVEFLSEEDADYAIK 75 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCS-----------------BCSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc-----------------CCcEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999977643221 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
.||+..+.++.|+|+++..+...
T Consensus 76 ~l~g~~~~g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 76 IMDMIKLYGKPIRVNKASAHNKN 98 (105)
T ss_dssp HSSSCBCSSCBCEEEETTTTSCC
T ss_pred HhCCCeECCeEEEEEECCCCCcC
Confidence 99999999999999998765443
No 13
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.69 E-value=1.3e-16 Score=133.12 Aligned_cols=86 Identities=17% Similarity=0.243 Sum_probs=74.7
Q ss_pred cccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 285 e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
+...++|||+|||.++++++|+++|++||.|..|+|+.++.+++ .+|||||+|++.++|++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~A~ 72 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGM-----------------HKGCAFLTYCERESALKAQ 72 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCS-----------------CCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCC-----------------cceEEEEEECCHHHHHHHH
Confidence 34678999999999999999999999999999999987654322 3899999999999999999
Q ss_pred HHHcCCCC---CCCceEEEEeeccCC
Q 013031 365 AELNDEGN---WRSGLRVRLMLRRGS 387 (451)
Q Consensus 365 ~~Lng~~~---~~~gLrV~l~~~r~~ 387 (451)
+.||+..+ .++.|+|+++..+..
T Consensus 73 ~~l~g~~~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 73 SALHEQKTLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp HHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred HHhcCCcccCCCCceEEEEECCcccc
Confidence 99999887 778899998876544
No 14
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.2e-17 Score=132.96 Aligned_cols=85 Identities=22% Similarity=0.297 Sum_probs=74.8
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEE-EEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTI-RTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~V-ri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
..++|||+|||.++++++|+++|+.||.|..| +|.+++.++. .+|||||+|++.++|++|++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~A~~ 66 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGN-----------------SKGYAFINFASFDASDAAIE 66 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCS-----------------CCSEEEEEBSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCC-----------------cCeEEEEEECCHHHHHHHHH
Confidence 46899999999999999999999999999999 9977643222 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
.||+..+.++.|+|.++..+..+
T Consensus 67 ~l~g~~~~g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 67 AMNGQYLCNRPITVSYAFKKDSK 89 (96)
T ss_dssp TTTTCEETTEECEEEESCCCCCC
T ss_pred HcCCCEECCEEEEEEEecccCCC
Confidence 99999999999999998765544
No 15
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=1.2e-16 Score=137.43 Aligned_cols=86 Identities=23% Similarity=0.346 Sum_probs=76.5
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++|+++|+++|+.||.|..|+|..++.+++ .+|||||+|++.++|++|++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~ 82 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGY-----------------LKGYTLVEYETYKEAQAAME 82 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSS-----------------BCSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999977643221 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
.||+..+.++.|+|.++..+..+
T Consensus 83 ~l~g~~~~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 83 GLNGQDLMGQPISVDWCFVRGPP 105 (126)
T ss_dssp HHTTCBSSSSBCEEEESEESSSC
T ss_pred HhCCCeeCCeEEEEEEecCCCCC
Confidence 99999999999999999876655
No 16
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.69 E-value=7.2e-17 Score=144.19 Aligned_cols=94 Identities=21% Similarity=0.152 Sum_probs=77.0
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++|+++|+++|+.||.|+.|+|+.++.+++ .+|||||+|++.++|++||+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~Ai~ 99 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKT-----------------ACGFCFVEYYSRADAENAMR 99 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHHH
Confidence 3578999999999999999999999999999999987653322 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCCCCCCCCCCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGSKPAQVKGKK 396 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~k~~~g~g~~ 396 (451)
.||+..+.++.|+|.++..+......++++.
T Consensus 100 ~l~g~~~~g~~l~V~~a~~~~~~~~~~~~~~ 130 (156)
T 1h2v_Z 100 YINGTRLDDRIIRTDWDAGFKEGRQYGRGRS 130 (156)
T ss_dssp HTTTSEETTEECEEEEESCCCTTCC------
T ss_pred HhCCCEECCeEEEEEECCCCCCcCCCCCCCC
Confidence 9999999999999999976555443344333
No 17
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.69 E-value=8.9e-17 Score=129.07 Aligned_cols=82 Identities=18% Similarity=0.201 Sum_probs=71.8
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++++++|+++|+.||.|..|++.+++.+++ .+|||||+|++.++|++|++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGK-----------------SKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987643222 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 013031 367 LNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r 385 (451)
||+..++++.|+|+++..+
T Consensus 68 l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 68 MGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp HTTCEETTEECEEEEEC--
T ss_pred cCCCEECCeEEEEEecCCC
Confidence 9999999999999988654
No 18
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-16 Score=132.21 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=75.0
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|+.||.|..|+|..++.+++ .+|||||+|++.++|++|++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~ 83 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGY-----------------LKGYTLVEYETYKEAQAAME 83 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSS-----------------EEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCc-----------------eeeEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999987653322 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~ 386 (451)
.||+..+.++.|+|+++..+.
T Consensus 84 ~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 84 GLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp HHTTCBSSSSBCEEEESEESS
T ss_pred HhcCCEECCcEEEEEeecCCC
Confidence 999999999999999987654
No 19
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.4e-16 Score=131.50 Aligned_cols=86 Identities=19% Similarity=0.291 Sum_probs=75.1
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCC-CCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLP-QTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p-~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
...++|||+|||.++++++|+++|+.||.|+.|+|+++ +.++ ..+|||||+|++.++|++|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~ 75 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTG-----------------AHRGFGFVDFITKQDAKKAF 75 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSC-----------------SSCSEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCC-----------------CcCceEEEEECCHHHHHHHH
Confidence 45789999999999999999999999999999999765 3222 13899999999999999999
Q ss_pred HHH-cCCCCCCCceEEEEeeccCCC
Q 013031 365 AEL-NDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 365 ~~L-ng~~~~~~gLrV~l~~~r~~k 388 (451)
+.| |+..+.++.|+|.++..+...
T Consensus 76 ~~l~~~~~~~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 76 NALCHSTHLYGRRLVLEWADSEVTV 100 (107)
T ss_dssp HHHHTCCBSSSCBCEEEECCCCCCC
T ss_pred HHhccCCeECCCEEEEEeCCCCCCC
Confidence 999 899999999999998765543
No 20
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.68 E-value=2.5e-16 Score=133.47 Aligned_cols=86 Identities=17% Similarity=0.194 Sum_probs=75.8
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|+.||.|..|+|++++.++. .+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~ 75 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK-----------------SKGYGFVSFFNKWDAENAIQ 75 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCC-----------------cceEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999987643221 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
.||+..++++.|+|+++..+..+
T Consensus 76 ~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 76 QMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp HTTTCEETTEECEEEESSCCCCC
T ss_pred HhCCCEECCEEEEEEEccCCCCC
Confidence 99999999999999998765544
No 21
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-17 Score=135.92 Aligned_cols=81 Identities=17% Similarity=0.250 Sum_probs=69.4
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCC-ceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
+++|||+|||.++|+++|+++|++|| .|+.|+|++++.+++ .||||||+|++.++|++|++.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~-----------------~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQ-----------------SRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCC-----------------CSSEEEEECSSHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCC-----------------cCceEEEEecCHHHHHHHHHh
Confidence 46999999999999999999999999 899999987764432 389999999999999999998
Q ss_pred HcC-CCCCCCceEEEEeecc
Q 013031 367 LND-EGNWRSGLRVRLMLRR 385 (451)
Q Consensus 367 Lng-~~~~~~gLrV~l~~~r 385 (451)
|++ ..+.++.|+|.++..+
T Consensus 64 ~~~~~~~~gr~i~V~~a~~~ 83 (91)
T 2lxi_A 64 NQHSLNILGQKVSMHYSDPK 83 (91)
T ss_dssp TTTEEEETTEEEEEECCCSC
T ss_pred cCCCeEECCEEEEEEEcCCC
Confidence 754 4577888999887643
No 22
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.3e-17 Score=133.71 Aligned_cols=85 Identities=26% Similarity=0.323 Sum_probs=75.2
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++++++|+++|+.||.|+.|+|..++.+++ .+|||||+|++.++|++|++.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEK-----------------HRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCC-----------------CSSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCC-----------------cceEEEEEECCHHHHHHHHHH
Confidence 568999999999999999999999999999999977643322 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccCCC
Q 013031 367 LNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~~k 388 (451)
||+..++++.|+|+++..+..+
T Consensus 74 l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2cqb_A 74 MNESELFGRTIRVNLAKPMRIK 95 (102)
T ss_dssp HTTEEETTEEEEEEECCCCCCC
T ss_pred hCCCEECCcEEEEEeCCCCCCC
Confidence 9999999999999998765554
No 23
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=132.42 Aligned_cols=85 Identities=18% Similarity=0.147 Sum_probs=74.7
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|+.||.|..|+|..++.+++ .+|||||+|++.++|++|++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKA-----------------PRGFAFVRFHDRRDAQDAEA 73 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCS-----------------BCSCEEEEESSSSHHHHHHH
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCC-----------------CCeEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999977643221 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
.||+..+.++.|+|.++..+..
T Consensus 74 ~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 74 AMDGAELDGRELRVQVARYGRR 95 (103)
T ss_dssp HHSSCCBTTBCCEEEECSSCCS
T ss_pred HcCCCEECCcEEEEEECCcCCC
Confidence 9999999999999999875443
No 24
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=134.04 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=73.0
Q ss_pred cccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 285 e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
+...++|||+|||.++|+++|+++|+.||.|+.|+|++++.+++ .+|||||+|++.++|++|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~Ai 76 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGK-----------------SRGYGFVTMADRAAAERAC 76 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCC-----------------CCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCc-----------------cceEEEEEECCHHHHHHHH
Confidence 34678999999999999999999999999999999987654322 3899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeecc
Q 013031 365 AELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~r 385 (451)
+.||+ .+.++.|+|+++..+
T Consensus 77 ~~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 77 KDPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp TCSSC-EETTEECEEEESTTT
T ss_pred HhCCC-cCCCEEEEEEEcccC
Confidence 99998 788888999998654
No 25
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=7.6e-17 Score=134.49 Aligned_cols=82 Identities=22% Similarity=0.234 Sum_probs=73.4
Q ss_pred cceEEEEcCCCC------cccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHH
Q 013031 287 QSRIVVAENLPE------DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (451)
Q Consensus 287 ~~RTVyV~nLP~------d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdA 360 (451)
..++|||+|||. ++++++|+++|++||.|..|+|.+++.+++ .||||||+|++.++|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~-----------------~kG~afV~f~~~~~A 67 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGK-----------------TKGFLFVECGSMNDA 67 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTE-----------------ECSEEEEEESSHHHH
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCc-----------------cceEEEEEECCHHHH
Confidence 367999999999 999999999999999999999987754322 389999999999999
Q ss_pred HHHHHHHcCCCCCC-CceEEEEeecc
Q 013031 361 EKAIAELNDEGNWR-SGLRVRLMLRR 385 (451)
Q Consensus 361 ekAv~~Lng~~~~~-~gLrV~l~~~r 385 (451)
++|++.||+..+.+ +.|+|.++..+
T Consensus 68 ~~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 68 KKIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp HHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred HHHHHHhCCcccCCCeEEEEEECchh
Confidence 99999999999998 99999998653
No 26
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=131.31 Aligned_cols=84 Identities=27% Similarity=0.333 Sum_probs=74.7
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++|+++|+++|+.||.|..|+|..+ ++ ..+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g-----------------~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GG-----------------RSKGFGFVCFSSPEEATKAVT 73 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SS-----------------SEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CC-----------------CcCEEEEEEECCHHHHHHHHH
Confidence 46789999999999999999999999999999999765 11 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
.||+..+.++.|+|+++..+..+
T Consensus 74 ~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 74 EMNGRIVATKPLYVALAQRKEER 96 (103)
T ss_dssp HHTTCBSSSSBCEEEECSSCCCC
T ss_pred HhCCCEeCCcEEEEEEecccccC
Confidence 99999999999999999765554
No 27
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.67 E-value=5.1e-16 Score=146.81 Aligned_cols=75 Identities=25% Similarity=0.325 Sum_probs=68.4
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCC-ceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
.++|||+||+.++++++|+++|+.|| .|..|+++.. .+|||||+|++.++|++|++.
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----------------------~~g~afV~f~~~~~A~~Ai~~ 208 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----------------------DRKMALIQMGSVEEAVQALID 208 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----------------------STTCEEEEESSHHHHHHHHHH
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----------------------CCcEEEEEECCHHHHHHHHHH
Confidence 58999999999999999999999999 9999998532 178999999999999999999
Q ss_pred HcCCCCC-CCceEEEEeec
Q 013031 367 LNDEGNW-RSGLRVRLMLR 384 (451)
Q Consensus 367 Lng~~~~-~~gLrV~l~~~ 384 (451)
||+..+. ++.|+|.++..
T Consensus 209 l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 209 LHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp HTTCBSSSSCBCEEEECSS
T ss_pred HCCCccCCCCeEEEEEecC
Confidence 9999998 88999998754
No 28
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.67 E-value=2.5e-16 Score=125.33 Aligned_cols=80 Identities=15% Similarity=0.151 Sum_probs=71.6
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Ln 368 (451)
.+|||+|||.++++++|+++|+.||.|..|++.++..+++ .+|||||+|++.++|++|++.||
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGS-----------------SRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCC-----------------EEEEEEEEESCHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCC-----------------ccceEEEEECCHHHHHHHHHHhc
Confidence 5899999999999999999999999999999987643322 38999999999999999999999
Q ss_pred CCCCCCCceEEEEeecc
Q 013031 369 DEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 369 g~~~~~~gLrV~l~~~r 385 (451)
+..+.++.|+|+++..+
T Consensus 65 g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 65 GQDLNGRPLRINWAAKL 81 (83)
T ss_dssp TCEETTEECEEEECCCC
T ss_pred CCeeCCcEEEEEecCcC
Confidence 99999999999988653
No 29
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.67 E-value=2e-16 Score=130.03 Aligned_cols=82 Identities=23% Similarity=0.348 Sum_probs=72.9
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
.++|||+|||.++++++|+++|++||.|..|+|..++.+++ .+|||||+|++.++|++|++.|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGR-----------------SKGYAFIEFRDLESSASAVRNL 64 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCC-----------------BCSEEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCc-----------------cceEEEEEECCHHHHHHHHHHh
Confidence 57999999999999999999999999999999987643222 3899999999999999999999
Q ss_pred cCCCCCCCceEEEEeeccC
Q 013031 368 NDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 368 ng~~~~~~gLrV~l~~~r~ 386 (451)
|+..+.++.|+|+++..+.
T Consensus 65 ~g~~~~g~~l~V~~a~~~~ 83 (96)
T 2x1f_A 65 NGYQLGSRFLKCGYSSNSD 83 (96)
T ss_dssp TTCEETTEECEEEECSCSS
T ss_pred CCCeECCeEEEEEEcCCCC
Confidence 9999999999999887543
No 30
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=130.90 Aligned_cols=85 Identities=25% Similarity=0.311 Sum_probs=74.2
Q ss_pred cccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 285 e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
....++|||+|||.++|+++|+++|+.||.|..|+|..++ ++ ..+|||||+|++.++|++|+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g-----------------~~~g~afV~f~~~~~a~~A~ 75 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AG-----------------KPKGLAYVEYENESQASQAV 75 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TS-----------------CEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CC-----------------CEEeEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999998664 21 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeccCC
Q 013031 365 AELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
+.||+..++++.|+|+++..+..
T Consensus 76 ~~l~g~~~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 76 MKMDGMTIKENIIKVAISNSGPS 98 (100)
T ss_dssp HHHTTEESSSCEEEEEECCCCSC
T ss_pred HHhCCCEECCEEEEEEECCCCCC
Confidence 99999999999999998865443
No 31
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.6e-16 Score=132.29 Aligned_cols=82 Identities=22% Similarity=0.223 Sum_probs=72.1
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++|+++|+++|++||.|+.|+|..++ ..+|||||+|++.++|++|++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~--------------------~~~g~afV~f~~~~~A~~A~~ 79 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR--------------------GGPPFAFVEFEDPRDAEDAVY 79 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS--------------------SSSCCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--------------------CCCcEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999995432 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
.||+..+.++.|+|+++..+..
T Consensus 80 ~l~g~~~~g~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 80 GRDGYDYDGYRLRVEFPRSGRG 101 (109)
T ss_dssp HHTTCEETTEECEEECCCCCCC
T ss_pred HcCCCEECCeEEEEEEcccCCC
Confidence 9999999999999998865443
No 32
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.66 E-value=1.4e-16 Score=136.14 Aligned_cols=81 Identities=25% Similarity=0.271 Sum_probs=72.1
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
..+|||+|||.++|+++|+++|++||.|.+|+|++++. ..||||||+|++.|+|++||+.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-------------------~~kg~afV~f~~~~~A~~Ai~~l 65 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-------------------GSKGYGFVHFETQEAAERAIEKM 65 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-------------------EEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-------------------CCCceEEEEECCHHHHHHHHHHc
Confidence 46899999999999999999999999999999986531 12899999999999999999999
Q ss_pred cCCCCCCCceEEEEeeccCC
Q 013031 368 NDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 368 ng~~~~~~gLrV~l~~~r~~ 387 (451)
|+..+.++.|+|.++..+..
T Consensus 66 ~~~~~~g~~i~V~~a~~~~~ 85 (115)
T 4f25_A 66 NGMLLNDRKVFVGRFKSRKE 85 (115)
T ss_dssp TTCEETTEECEEEESSCCCC
T ss_pred CCCEECCEEEEEEECCCccc
Confidence 99999999999998865443
No 33
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.66 E-value=6.6e-17 Score=131.82 Aligned_cols=81 Identities=16% Similarity=0.078 Sum_probs=68.2
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCC--ceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG--~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
.+|||+||+.++|+++|+++|+.|| .|..|++.+++.+++ .||||||+|++.++|++|++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~-----------------~kG~afV~f~~~~~a~~Ai~~ 64 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ-----------------SKGFALVGVGSEASSKKLMDL 64 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCC-----------------EEEEEEECC-CHHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCc-----------------cCcEEEEEECCHHHHHHHHHH
Confidence 5899999999999999999999999 999999987754332 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccC
Q 013031 367 LNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~ 386 (451)
||+..+.++.|+|..+....
T Consensus 65 l~g~~~~gr~i~V~~~~~~~ 84 (90)
T 3p5t_L 65 LPKRELHGQNPVVTPSNKLE 84 (90)
T ss_dssp GGGSCSSSCCCEECCC----
T ss_pred cCCCeeCCEEEEEEECCCCc
Confidence 99999999999999886543
No 34
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=131.96 Aligned_cols=86 Identities=26% Similarity=0.291 Sum_probs=75.4
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|+.||.|..|+|.+++.+++ .+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~A~~ 75 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQ-----------------SKGFAFISFHRREDAARAIA 75 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCS-----------------EEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCc-----------------eeeEEEEEECCHHHHHHHHH
Confidence 3578999999999999999999999999999999987653221 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
.||+..+.++.|+|.++..+..+
T Consensus 76 ~l~g~~~~g~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 76 GVSGFGYDHLILNVEWAKPSTNS 98 (103)
T ss_dssp HTTTCEETTEECEEEESSCCCCS
T ss_pred HcCCCeeCCcEEEEEECCCCCCC
Confidence 99999999999999998765443
No 35
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=128.02 Aligned_cols=83 Identities=23% Similarity=0.283 Sum_probs=72.4
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++|+++|+++|+.||.|..|+|..++.+++ ..+|||||+|++.++|++|++.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~----------------~~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH----------------LSKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEE----------------EECSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCC----------------CCCcEEEEEEecHHHHHHHHHH
Confidence 468999999999999999999999999999999976542110 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 013031 367 LNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r 385 (451)
||+..+.++.|+|.++...
T Consensus 67 l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 67 MDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp HTTCEETTEECEEEEECCC
T ss_pred cCCCeECCeEEEEEECCCC
Confidence 9999999999999988643
No 36
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-16 Score=131.54 Aligned_cols=84 Identities=19% Similarity=0.257 Sum_probs=73.2
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++++++|+++|+.|| |..|+|++++.++ ...+|||||+|++.++|++|+ .
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~----------------g~~~g~afV~f~~~~~a~~A~-~ 75 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNP----------------ERLKGFGYAEFEDLDSLLSAL-S 75 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCT----------------TSBCSCEEEEESSHHHHHHHH-G
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCC----------------CCcCeEEEEEECCHHHHHHHH-h
Confidence 568999999999999999999999999 9999998765320 013899999999999999999 9
Q ss_pred HcCCCCCCCceEEEEeeccCCC
Q 013031 367 LNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~~k 388 (451)
||+..+.++.|+|.++..+..+
T Consensus 76 l~g~~~~g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 76 LNEESLGNKRIRVDVADQAQDK 97 (104)
T ss_dssp GGTCEETTEECEEEECCCCCCC
T ss_pred cCCCEeCCcEEEEEEccCCCCC
Confidence 9999999999999998776554
No 37
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.8e-16 Score=131.91 Aligned_cols=85 Identities=24% Similarity=0.291 Sum_probs=74.3
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++|+++|+++|+.||.|..|+|.+++.++. .+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~A~~ 75 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEH-----------------SKGCAFAQFMTQEAAQKCLA 75 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCC-----------------BCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC-----------------CccEEEEEECCHHHHHHHHH
Confidence 3578999999999999999999999999999999987654322 38999999999999999999
Q ss_pred HHc------CCCCCCCceEEEEeeccCC
Q 013031 366 ELN------DEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Ln------g~~~~~~gLrV~l~~~r~~ 387 (451)
.|| +..+.++.|+|+++..+..
T Consensus 76 ~~~~~~~~~~~~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 76 AASLEAEGGGLKLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp HHCTTTTTCCEESSSCEEEEECCCCCCC
T ss_pred HhccccccCCcEEcCEEEEEEECCCCcc
Confidence 999 8888888999998876544
No 38
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.4e-16 Score=130.13 Aligned_cols=83 Identities=25% Similarity=0.306 Sum_probs=73.7
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|+.||.|+.|+|++++. ..+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-------------------~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT-------------------SNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC-------------------SSCCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC-------------------CCCCEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999986531 127899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
.||+..+.++.|+|.++..+..
T Consensus 74 ~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 74 AMNGRKILGKEVKVNWATTPSS 95 (103)
T ss_dssp HHTTEEETTEEEEEEECCCTTC
T ss_pred HhCCCCcCCCeEEEEECCCCcc
Confidence 9999999999999999876443
No 39
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.66 E-value=1.6e-16 Score=126.99 Aligned_cols=79 Identities=27% Similarity=0.365 Sum_probs=70.6
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++++++|+++|++||.|..|++.+++.+++ .+|||||+|++.++|++|++.
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEK-----------------HRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTE-----------------ECSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCc-----------------cccEEEEEECCHHHHHHHHHH
Confidence 578999999999999999999999999999999976643221 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 013031 367 LNDEGNWRSGLRVRLM 382 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~ 382 (451)
||+..+.++.|+|+++
T Consensus 69 l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 69 MNESELFGRTIRVNLA 84 (85)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred hCCCEECCcEEEEEEc
Confidence 9999999999999875
No 40
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.66 E-value=3.1e-16 Score=131.84 Aligned_cols=85 Identities=24% Similarity=0.320 Sum_probs=75.2
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++|+++|+++|+.||.|..|+|..++.+++ .+|||||+|++.++|++|++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~Ai~ 86 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGF-----------------SKGYALVEYETHKQALAAKE 86 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSS-----------------BCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCC-----------------cceEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999976643222 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
.||+..++++.|+|.++..+..
T Consensus 87 ~l~g~~~~g~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 87 ALNGAEIMGQTIQVDWCFVKGP 108 (110)
T ss_dssp HHTTCEETTEECEEEESEESSC
T ss_pred HcCCCEECCcEEEEEEcccCCC
Confidence 9999999999999999876544
No 41
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.66 E-value=5.5e-16 Score=129.03 Aligned_cols=84 Identities=21% Similarity=0.308 Sum_probs=74.0
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++++++|+++|+.||.|+.|+|..+++ + ..+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-g-----------------~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-G-----------------SSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS-S-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-----------------CcCcEEEEEeCCHHHHHHHHHH
Confidence 578999999999999999999999999999999987641 1 1389999999999999999999
Q ss_pred HcCCCCCC---CceEEEEeeccCCC
Q 013031 367 LNDEGNWR---SGLRVRLMLRRGSK 388 (451)
Q Consensus 367 Lng~~~~~---~gLrV~l~~~r~~k 388 (451)
||+..+.+ +.|+|.++..+..+
T Consensus 76 l~g~~~~gg~~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 76 LHGSQTMPGASSSLVVKFADTDKES 100 (105)
T ss_dssp HSSCCCCTTCSSCCEEEESCSSCCC
T ss_pred HcCCccCCCCCccEEEEECccCccc
Confidence 99998887 88999998765554
No 42
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=133.79 Aligned_cols=87 Identities=23% Similarity=0.299 Sum_probs=75.0
Q ss_pred cccceEEEEcCCCCcccHHHHHHHHhcCCceE--------EEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCC
Q 013031 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVK--------TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (451)
Q Consensus 285 e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~--------~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet 356 (451)
....++|||+|||.++|+++|+++|+.||.|. .|+|..++.+++ .+|||||+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~-----------------~~g~afV~f~~ 74 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGK-----------------PKGDATVSYED 74 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCS-----------------BCSEEEEEBSS
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCC-----------------eeeEEEEEECC
Confidence 34678999999999999999999999999999 688876643222 38999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEeeccCCC
Q 013031 357 VELAEKAIAELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 357 ~EdAekAv~~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
.++|++|++.||+..+.++.|+|+++..+...
T Consensus 75 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 75 PPTAKAAVEWFDGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEECSSCCCCS
T ss_pred HHHHHHHHHHcCCCccCCCEEEEEECCCCCCC
Confidence 99999999999999999999999988765443
No 43
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=6.4e-16 Score=125.57 Aligned_cols=78 Identities=22% Similarity=0.225 Sum_probs=71.2
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|++||.|+.|+|. ||||||+|++.++|++|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~g~afV~f~~~~~A~~A~~ 60 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------------------------KNYGFVHIEDKTAAEDAIR 60 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------------------------TTEEEEEESSHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999984 6799999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
.||+..+.++.|+|+++..+...
T Consensus 61 ~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 61 NLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp HHTTCBCSSCBCEEECSSCCCCC
T ss_pred HhcCCccCCcEEEEEECCCCCCC
Confidence 99999999999999988765543
No 44
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.66 E-value=2.1e-16 Score=134.10 Aligned_cols=85 Identities=21% Similarity=0.323 Sum_probs=74.5
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|+.||.|+.|+|++++.+++ .+|||||+|++.++|++|++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~ 85 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNL-----------------SKCFGFVSYDNPVSAQAAIQ 85 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCS-----------------EEEEEEEECSSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCC-----------------cCccEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999987653221 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
.||+..+.++.|+|+++..+..
T Consensus 86 ~l~g~~~~g~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 86 SMNGFQIGMKRLKVQLKRSKND 107 (115)
T ss_dssp HHTTCEETTEECEEECCCCSCC
T ss_pred HcCCCEECCEEEEEEEcCCCCc
Confidence 9999999999999998865443
No 45
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=6e-16 Score=131.25 Aligned_cols=79 Identities=16% Similarity=0.151 Sum_probs=69.3
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||+++++++|+++|++||.|..|+|++. ||||||||++.++|++|++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~~ 70 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----------------------KRQALVEFENIDSAKECVTF 70 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999998632 78999999999999999999
Q ss_pred HcCCC--CCCCceEEEEeeccCCC
Q 013031 367 LNDEG--NWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 367 Lng~~--~~~~gLrV~l~~~r~~k 388 (451)
|++.. +.++.|+|.++..+..+
T Consensus 71 l~~~~~~i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 71 AADVPVYIAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp HHHSCCBSSSSBCEEEECSSSSCC
T ss_pred hccCCceECCEEEEEEEccCcccc
Confidence 97654 77888999998754443
No 46
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.7e-16 Score=131.95 Aligned_cols=81 Identities=19% Similarity=0.227 Sum_probs=72.0
Q ss_pred cccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 285 e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
+...++|||+|||.++|+++|+++|+.||.|..|+|++++. +. .+|||||+|++.++|++|+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~-----------------~rG~aFV~F~~~e~a~~Ai 69 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KA-----------------FKGSIFVVFDSIESAKKFV 69 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TS-----------------CCCEEEEEESSHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CC-----------------CccEEEEEECCHHHHHHHH
Confidence 34678999999999999999999999999999999987643 21 3899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeec
Q 013031 365 AELNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~ 384 (451)
+ +|+..+.++.|+|.+...
T Consensus 70 ~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 70 E-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp T-SSCCCCTTTTCEEEEHHH
T ss_pred H-cCCCEECCEEEEEEEchH
Confidence 9 899999999999997654
No 47
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=8.9e-17 Score=136.21 Aligned_cols=86 Identities=26% Similarity=0.279 Sum_probs=75.0
Q ss_pred hcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHH
Q 013031 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (451)
Q Consensus 284 ~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekA 363 (451)
++...++|||+||+.++++++|+++|+.||.|..|+|+.++.+++ .+|||||+|++.++|++|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A 83 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRR-----------------SKGIAYVEFCEIQSVPLA 83 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSS-----------------CCCCEEEEESCGGGHHHH
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCc-----------------cCcEEEEEeCcHHHHHHH
Confidence 445678999999999999999999999999999999987654322 389999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeeccCC
Q 013031 364 IAELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 364 v~~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
+ .||+..++++.|+|.++..+..
T Consensus 84 ~-~l~g~~~~g~~l~V~~a~~~~~ 106 (114)
T 2cq4_A 84 I-GLTGQRLLGVPIIVQASQAEKN 106 (114)
T ss_dssp H-HHTTEEETTEEEEEEEHHHHHH
T ss_pred H-HcCCCEeCCeEEEEEecCCCcc
Confidence 9 9999999999999998875443
No 48
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=8.6e-16 Score=127.64 Aligned_cols=84 Identities=17% Similarity=0.214 Sum_probs=74.7
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|+.||.|..|+|.+++. ..+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-------------------~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-------------------GSKGFGFVTFENSADADRARE 73 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT-------------------TTCCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-------------------CCcEEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999986531 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
.||+..+.++.|+|.++..+..+
T Consensus 74 ~l~g~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 74 KLHGTVVEGRKIEVNNATARVMT 96 (103)
T ss_dssp HHTTCEETTEECEEEECCSSCCC
T ss_pred HhCCCEECCEEEEEEEcccCCCC
Confidence 99999999999999998766554
No 49
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=133.03 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=68.6
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCc--eEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS--VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~--V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
.-.||||+||+.++|+++|+++|++||. |.+|++++++.+++ +||||||+|++.++|++|+
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~-----------------srG~aFV~f~~~~~A~~Ai 70 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQ-----------------NRGFAFVQLSSAMDASQLL 70 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSS-----------------CSSEEEEECSSSHHHHHHH
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCC-----------------CceEeEEEECCHHHHHHHH
Confidence 3459999999999999999999999995 67999987764432 3899999999999999999
Q ss_pred HHHcCCC----CCCCceEEEEee
Q 013031 365 AELNDEG----NWRSGLRVRLML 383 (451)
Q Consensus 365 ~~Lng~~----~~~~gLrV~l~~ 383 (451)
+.||+.. +.++.|+|+++.
T Consensus 71 ~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 71 QILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp HHHHSSSSCEEETTEEEEEEECC
T ss_pred HHhcCCCCCceECCEEEEEEEcc
Confidence 9999864 667788888764
No 50
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.3e-16 Score=129.79 Aligned_cols=87 Identities=25% Similarity=0.300 Sum_probs=73.5
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++++++|+++|+.||.|..|+|.+++... + ....+|||||+|++.++|++|++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~---------g-----t~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKA---------G-----VLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTT---------C-----CEEEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC---------C-----CcCcccEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999998654200 0 001389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccCC
Q 013031 367 LNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~~ 387 (451)
||+..+.++.|+|+++..+..
T Consensus 70 l~g~~~~g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 70 LQGHTVDGHKLEVRISERATK 90 (98)
T ss_dssp STTCEETTEECEEECSSCSSC
T ss_pred hCCCeeCCeEEEEEEccCCCC
Confidence 999999999999998865444
No 51
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.65 E-value=5.4e-16 Score=128.20 Aligned_cols=80 Identities=19% Similarity=0.251 Sum_probs=71.6
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEE--------EEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--------IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~--------Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~ 357 (451)
...++|||+||+.++++++|+++|++||.|.. |+|..++.+++ .+|||||+|++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~-----------------~~G~afV~f~~~ 73 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGK-----------------LKGEATVSFDDP 73 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCS-----------------EEEEEEEEBSSH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCC-----------------eeeEEEEEECCH
Confidence 35689999999999999999999999999999 99987653322 389999999999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEe
Q 013031 358 ELAEKAIAELNDEGNWRSGLRVRLM 382 (451)
Q Consensus 358 EdAekAv~~Lng~~~~~~gLrV~l~ 382 (451)
++|++|++.||+..+.++.|+|+++
T Consensus 74 ~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 74 PSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp HHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEec
Confidence 9999999999999999999999876
No 52
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.2e-16 Score=134.89 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=69.0
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||+++|+++|+++|++||+|++|+|+++ ||||||+|++.++|++|++.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------------------kGfaFVeF~~~~~A~~Ai~~ 71 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------------------KNQAFIEMNTEEAANTMVNY 71 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999999642 78999999999999999999
Q ss_pred HcC--CCCCCCceEEEEeeccCCC
Q 013031 367 LND--EGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 367 Lng--~~~~~~gLrV~l~~~r~~k 388 (451)
|++ ..+.++.|+|.++..+..+
T Consensus 72 l~~~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 72 YTSVTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp HTTSCCEETTEECCBCCCSSSSCC
T ss_pred hccCCceECCEEEEEEEcCCCCCC
Confidence 874 5677888988887654443
No 53
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.64 E-value=2.4e-16 Score=127.01 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=71.6
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
.+.|+|||+|||.++++++|+++|+.||.|..|++.+++.+++ .+|||||+|++.++|++|+
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~a~- 65 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGH-----------------PKGFAYIEFSDKESVRTSL- 65 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSS-----------------CCEEEEEEESSTHHHHHHG-
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCC-----------------cceEEEEEECCHHHHHHHH-
Confidence 3578999999999999999999999999999999987653322 3899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeec
Q 013031 366 ELNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~ 384 (451)
.||+..+.++.|+|.++..
T Consensus 66 ~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 66 ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp GGTTCEETTEECEEEETTT
T ss_pred hcCCCEECCcEEEEEEccC
Confidence 8999999998999987753
No 54
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=9e-16 Score=129.57 Aligned_cols=84 Identities=21% Similarity=0.193 Sum_probs=73.7
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+||+.++++++|+++|+.||.|+.|+|+++++ + ..+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g-----------------~~~g~afV~f~~~~~a~~A~~~ 75 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-G-----------------KSRGIGTVTFEQSIEAVQAISM 75 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-C-----------------SEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-----------------CeeeEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987642 1 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccCCC
Q 013031 367 LNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~~k 388 (451)
||+..+.++.|+|+++.....+
T Consensus 76 l~g~~~~g~~l~v~~a~~~~~~ 97 (114)
T 2do0_A 76 FNGQLLFDRPMHVKMDERALPK 97 (114)
T ss_dssp HTTCEETTEECEEEECSCCCCC
T ss_pred hCCCEeCCCEEEEEEcccCCCC
Confidence 9999999999999998654443
No 55
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.64 E-value=6.1e-16 Score=128.92 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=70.7
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++|+++|+++|+.||.|..|++. ++||||+|++.++|++|++.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~~~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------------------------KDYAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEeCCHHHHHHHHHH
Confidence 46899999999999999999999999999999984 56899999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccCCC
Q 013031 367 LNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~~k 388 (451)
||+..+.++.|+|.++..+..+
T Consensus 65 l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 65 MNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp HTTEEETTEEEEEEECCCCCCC
T ss_pred HCCCccCCCEEEEEEcCCCccc
Confidence 9999999999999999766554
No 56
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.64 E-value=6e-16 Score=131.07 Aligned_cols=83 Identities=20% Similarity=0.259 Sum_probs=73.7
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|++||.|..|+|++++.+++ .+|||||+|++.++|++|++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~F~~~~~A~~Ai~ 86 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR-----------------SKGYGFITFSDSECAKKALE 86 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTE-----------------EEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCc-----------------cceEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999987643221 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 013031 366 ELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r 385 (451)
.||+..+.++.|+|+++..+
T Consensus 87 ~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 87 QLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp HHTTCCSSSSCCEEECSCSS
T ss_pred HcCCCEECCEEEEEEEcccC
Confidence 99999999999999987643
No 57
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.3e-16 Score=132.82 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=68.1
Q ss_pred cceEEEEcCCCC-cccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 287 ~~RTVyV~nLP~-d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
..++|||+|||+ ++|+++|+++|+.||.|.+|+|+++ ||||||||++.++|++||+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----------------------INEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----------------------SSCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 468999999999 9999999999999999999999642 6799999999999999999
Q ss_pred HHcCCC--CCCCceEEEEeecc
Q 013031 366 ELNDEG--NWRSGLRVRLMLRR 385 (451)
Q Consensus 366 ~Lng~~--~~~~gLrV~l~~~r 385 (451)
.||+.. +.++.|+|.++..+
T Consensus 71 ~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 71 YYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp HHHHSCCEETTEECEEEEECCC
T ss_pred HHcCCCceECCcEEEEEECCCC
Confidence 998654 78889999998743
No 58
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=6.1e-16 Score=131.62 Aligned_cols=79 Identities=20% Similarity=0.167 Sum_probs=71.0
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|++||.|..|+|.. .+|||||+|++.++|++|++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----------------------~~g~afV~f~~~~~A~~Ai~ 64 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----------------------GGITAIVEFLEPLEARKAFR 64 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----------------------SSSCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCCEEEEEeCCHHHHHHHHH
Confidence 3568999999999999999999999999999998842 17899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
.||+..+.++.|+|.++.....
T Consensus 65 ~l~g~~~~g~~l~V~~a~~~~~ 86 (111)
T 1whx_A 65 HLAYSKFHHVPLYLEWAPIGVF 86 (111)
T ss_dssp HHTTCBSSSSBCEEEEEETTTT
T ss_pred HhCCCEECCeEEEEEECCCCcc
Confidence 9999999999999999875433
No 59
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.3e-16 Score=127.70 Aligned_cols=79 Identities=19% Similarity=0.288 Sum_probs=70.8
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++++++|+++|++||.|..|+|..++.+++ .+|||||+|++.++|++|++.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRK-----------------SKGVAFILFLDKDSAQNCTRA 77 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCC-----------------CTTCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCC-----------------cccEEEEEECCHHHHHHHHHH
Confidence 567999999999999999999999999999999987653222 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 013031 367 LNDEGNWRSGLRVRLM 382 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~ 382 (451)
||+..++++.|+|+++
T Consensus 78 l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 78 INNKQLFGRVIKASIA 93 (94)
T ss_dssp TTTEEETTEEEEEEEC
T ss_pred cCCCeeCCcEEEEEec
Confidence 9999999999999875
No 60
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.64 E-value=4e-16 Score=127.44 Aligned_cols=80 Identities=24% Similarity=0.273 Sum_probs=71.2
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|+.||.|+.|+|.+++. + ..+|||||+|++.++|++|++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g-----------------~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-G-----------------KPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-----------------CEEEEEEEEESSTHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-C-----------------CCceEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999986642 1 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 013031 366 ELNDEGNWRSGLRVRLML 383 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~ 383 (451)
.||+..++++.|+|+++.
T Consensus 76 ~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 76 LLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp HHTTCEETTEECEEECCC
T ss_pred HhCCCEECCCEEEEEEcC
Confidence 999999999999998764
No 61
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.64 E-value=4.8e-16 Score=136.11 Aligned_cols=84 Identities=20% Similarity=0.202 Sum_probs=74.3
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|++||.|..|+|++++.+++ .+|||||+|++.++|++|++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-----------------~~G~afV~F~~~~~A~~Ai~ 106 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRR-----------------SRGFAFVYFENVDDAKEAKE 106 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSC-----------------CCCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999987754322 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~ 386 (451)
.||+..+.++.|+|+++..+.
T Consensus 107 ~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 107 RANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp HHTTCCSSSSCCEESCCSSSS
T ss_pred HhCCCEECCEEEEEEEecCCC
Confidence 999999999999999876543
No 62
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.5e-16 Score=127.54 Aligned_cols=80 Identities=21% Similarity=0.172 Sum_probs=71.3
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++++++|+++|+.||.|..|++.+++.+++ .+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRR-----------------SRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSS-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCC-----------------cccEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987643221 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 013031 367 LNDEGNWRSGLRVRLML 383 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~ 383 (451)
||+..+.++.|+|+++.
T Consensus 77 l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 77 ANGMELDGRRIRVSGPS 93 (95)
T ss_dssp HTTEEETTEEEEEECCS
T ss_pred hCCCEECCEEEEEEecC
Confidence 99999999889998764
No 63
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.64 E-value=5.2e-16 Score=131.53 Aligned_cols=75 Identities=20% Similarity=0.162 Sum_probs=67.5
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
.+++|||+|||+++|+++|+++|++||.|++|+|++. ||||||||++.++|++|++.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----------------------kg~AFVef~~~~~A~~Av~~ 76 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----------------------KRQALVEFEDVLGACNAVNY 76 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 5789999999999999999999999999999998632 78999999999999999999
Q ss_pred HcCCC--CCCCceEEEEeec
Q 013031 367 LNDEG--NWRSGLRVRLMLR 384 (451)
Q Consensus 367 Lng~~--~~~~gLrV~l~~~ 384 (451)
||+.. +.++.|+|.+...
T Consensus 77 ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 77 AADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp HHHSCEEETTEEEEEEECSC
T ss_pred hcCCCceeCCcEEEEEeccc
Confidence 99876 5678899988754
No 64
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.6e-16 Score=125.93 Aligned_cols=78 Identities=26% Similarity=0.234 Sum_probs=70.9
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++|+++|+++|+.||.|..|++. ++||||+|++.++|++|++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------------------------~~~afV~f~~~~~a~~A~~ 61 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------------------------KDYAFVHMEKEADAKAAIA 61 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999984 4589999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
.||+..+.++.|+|.++..+..+
T Consensus 62 ~l~g~~~~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 62 QLNGKEVKGKRINVELSTKGQKK 84 (90)
T ss_dssp HHTTCEETTEECEEEESCCCCCC
T ss_pred HhCCCEECCcEEEEEECCCCCCC
Confidence 99999999999999998765443
No 65
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.64 E-value=3.3e-16 Score=133.28 Aligned_cols=81 Identities=20% Similarity=0.291 Sum_probs=72.1
Q ss_pred cccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 285 e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
....++|||+|||.++++++|+++|++||.|..|+|++++.+++ .+|||||+|++.++|++|+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~A~ 99 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSL-----------------SKCFGFVSFDNPDSAQVAI 99 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSC-----------------CCCEEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCC-----------------cCcEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999999987654322 3899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEe
Q 013031 365 AELNDEGNWRSGLRVRLM 382 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~ 382 (451)
+.||+..+.++.|+|+++
T Consensus 100 ~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 100 KAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp HHCCCCEETTEECCEEEC
T ss_pred HHcCCCEECCEEEEEEec
Confidence 999999999988999875
No 66
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=6.6e-16 Score=128.38 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=73.3
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhc-CCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSA-VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~-fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
..++|||+|||.++|+++|+++|+. ||.|..|+|++++ +++ .+|||||+|++.++|++|++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~-----------------~~g~afV~f~~~~~a~~A~~ 69 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGV-----------------SKGYGFVKFTDELEQKRALT 69 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCC-----------------EEEEEEEEESCHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCC-----------------ccceEEEEECCHHHHHHHHH
Confidence 4689999999999999999999999 9999999998764 221 38999999999999999999
Q ss_pred HHcCCC-CCCCceEEEEeeccCC
Q 013031 366 ELNDEG-NWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~-~~~~gLrV~l~~~r~~ 387 (451)
.||+.. +.++.|+|.++..+..
T Consensus 70 ~l~g~~~~~g~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 70 ECQGAVGLGSKPVRLSVAIPKAS 92 (104)
T ss_dssp HTTTCCSSSSSCCCCCBCCCCCS
T ss_pred HccCCcccCCEeEEEEEccCCCc
Confidence 999998 8999999998865443
No 67
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=8.3e-16 Score=126.72 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=70.1
Q ss_pred ccceEEEEcCCCC-cccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 286 LQSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 286 ~~~RTVyV~nLP~-d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
...++|||+|||. ++++++|+++|+.||.|..|+|. +|||||+|++.++|++|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~A~ 62 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------------------------NAFGFIQFDNPQSVRDAI 62 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------------------------TTEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------------------CCEEEEEECCHHHHHHHH
Confidence 3578999999998 99999999999999999999983 789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeccCC
Q 013031 365 AELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
+.||+..+.++.|+|.++..+..
T Consensus 63 ~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 63 ECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp HHHTCSSCBTTTBCEEEEECCCC
T ss_pred HHcCCCeeCCcEEEEEEcCcCCC
Confidence 99999999999999999975443
No 68
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.7e-16 Score=130.50 Aligned_cols=84 Identities=30% Similarity=0.364 Sum_probs=74.4
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++++++|+++|+.||.|..|+|.+++.++. .+|||||+|++.++|++|++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGK-----------------PKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTE-----------------EEEEEEEECSCHHHHHHHHHH
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCc-----------------cceEEEEEECCHHHHHHHHHH
Confidence 568999999999999999999999999999999987643221 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccCC
Q 013031 367 LNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~~ 387 (451)
||+..+.++.|+|.++..+..
T Consensus 70 l~g~~~~g~~l~v~~a~~~~~ 90 (104)
T 1p1t_A 70 LNGREFSGRALRVDNAASEKN 90 (104)
T ss_dssp SSSBSCSSSCBEEEETTCTTH
T ss_pred hCCCeeCCcEEEEEeCCCccc
Confidence 999999999999999875543
No 69
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.7e-16 Score=134.25 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=70.6
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||+++|+++|+++|++||.|++|+|+++ ||||||||++.++|++|++.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------------------kG~AFVeF~~~e~A~~Ai~~ 86 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------------------KNQAFIEMNTEEAANTMVNY 86 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----------------------GTEEEEECSCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999999632 78999999999999999999
Q ss_pred HcC--CCCCCCceEEEEeeccCCC
Q 013031 367 LND--EGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 367 Lng--~~~~~~gLrV~l~~~r~~k 388 (451)
|++ ..+.++.|+|.++..+..+
T Consensus 87 l~~~~~~l~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 87 YTSVTPVLRGQPIYIQFSNHKELK 110 (119)
T ss_dssp HHHHCCCBTTBCCEEEECSSSSCC
T ss_pred hccCCceECCeEEEEEEccCCCCC
Confidence 984 5788899999998765554
No 70
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=7.3e-16 Score=128.25 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=72.4
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++++++|+++|+.|| |..|+|++++.+++ .+|||||+|++.++|++|+ .
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~-~ 74 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDK-----------------FKGFCYVEFDEVDSLKEAL-T 74 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCS-----------------EEEEEEEEESSHHHHHHHG-G
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCc-----------------cceEEEEEECCHHHHHHHH-h
Confidence 578999999999999999999999997 99999987754322 3899999999999999999 8
Q ss_pred HcCCCCCCCceEEEEeeccCC
Q 013031 367 LNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~~ 387 (451)
||+..+.++.|+|.++..+..
T Consensus 75 l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 75 YDGALLGDRSLRVDIAEGRKQ 95 (103)
T ss_dssp GTTCEETTEECEEEECCCCCC
T ss_pred hCCCeECCeEEEEEEecCCCC
Confidence 999999999999999876544
No 71
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.8e-16 Score=128.06 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=71.9
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceE-EEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVK-TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~-~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
..++|||+|||.++++++|+++|++||.|. .|+|++++.+++ .+|||||+|++.++|++|++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGI-----------------PAGYCFVEFADLATAEKCLH 70 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCC-----------------EEEEEEEECSCHHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCC-----------------cCCEEEEEeCCHHHHHHHHH
Confidence 578999999999999999999999999999 999987754322 38999999999999999999
Q ss_pred HHcCCCCCCCc----eEEEEeec
Q 013031 366 ELNDEGNWRSG----LRVRLMLR 384 (451)
Q Consensus 366 ~Lng~~~~~~g----LrV~l~~~ 384 (451)
.||+..+.++. |+|.++..
T Consensus 71 ~l~g~~~~g~~~~~~l~v~~a~~ 93 (99)
T 2div_A 71 KINGKPLPGATPAKRFKLNYATY 93 (99)
T ss_dssp TTTTSEESSCSSCEECCEEETTC
T ss_pred HHcCCccCCCCcceeEEEeecCC
Confidence 99999998888 88887753
No 72
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9.1e-16 Score=125.17 Aligned_cols=77 Identities=26% Similarity=0.207 Sum_probs=70.3
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|++||.|..|++. ++||||+|++.++|++|++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------------------------~~~afV~f~~~~~a~~A~~ 62 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------------------------KDYAFVHMERAEDAVEAIR 62 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------------------------SSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------------------------CCEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999984 5599999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
.||+..+.++.|+|+++..+..
T Consensus 63 ~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 63 GLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp HHTTEEETTEEEEEEESSCCCS
T ss_pred HhCCCeeCCcEEEEEEccCCCC
Confidence 9999999999999999875543
No 73
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=9.9e-16 Score=126.59 Aligned_cols=79 Identities=28% Similarity=0.322 Sum_probs=71.7
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++|+++|+++|++||.|..|++.++ ||||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----------------------kg~afV~f~~~~~a~~a~~ 69 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----------------------KGFGFIRLETRTLAEIAKV 69 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----------------------TTEEEEECSSSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 35689999999999999999999999999999998632 7899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
.||+..+.++.|+|+++..+..
T Consensus 70 ~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 70 ELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp HHTTCCBTTBCCEEEESSCCSC
T ss_pred HhCCCEeCCceEEEEEcCCCCC
Confidence 9999999999999999876544
No 74
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.1e-16 Score=131.88 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=73.0
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++|+++|+++|+.||.|..|+|+.++.+++ .+|||||+|++.++|++|++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~Ai~ 87 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR-----------------SRGFGFVTFSSMAEVDAAMA 87 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSS-----------------CCSEEEEECSSHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCC-----------------cCceEEEEeCCHHHHHHHHH
Confidence 4568999999999999999999999999999999987653322 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
. ++..+.++.|+|+++..+..
T Consensus 88 ~-~~~~~~g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 88 A-RPHSIDGRVVEPKRAVAREE 108 (116)
T ss_dssp S-CSEEETTEEEEEECCSSCCC
T ss_pred h-CCcEECCEEEEEEECCCCcc
Confidence 7 88888888899998865544
No 75
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.62 E-value=2.4e-15 Score=134.03 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=75.5
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|+.||.|..|+|..++.+++ .+|||||+|++.++|++|++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~ 130 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE-----------------SRGFAFVRFHDKRDAEDAMD 130 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTT-----------------SCCEEEEEESBHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCc-----------------cceEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999987654322 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
.||+..+.++.|+|.++..+..+
T Consensus 131 ~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 131 AMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp HSTTEESSSSEEEEEEECCSSCC
T ss_pred HhCCCEECCeEEEEEECCCCCCC
Confidence 99999999999999998765443
No 76
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.62 E-value=1.4e-15 Score=123.56 Aligned_cols=81 Identities=25% Similarity=0.260 Sum_probs=71.9
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++++++|+++|+.||.|..|+|.++. + ..+|||||+|++.++|++|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~--g-----------------~~~g~afV~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--G-----------------KSKGCGVVKFESPEVAERACRM 67 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESS--S-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccC--C-----------------CcceEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999997531 1 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccC
Q 013031 367 LNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~ 386 (451)
||+..+.++.|+|+++....
T Consensus 68 l~g~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 68 MNGMKLSGREIDVRIDRNAS 87 (92)
T ss_dssp HTTCCBTTBCCCCEECSCCS
T ss_pred hCCCEECCcEEEEEEcCCCC
Confidence 99999999999999886543
No 77
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=126.21 Aligned_cols=81 Identities=20% Similarity=0.180 Sum_probs=72.1
Q ss_pred cceEEEEcCCCCcccHHHHH----HHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~----e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAek 362 (451)
..++|||+|||.++++++|+ ++|++||.|..|+|..++. . +|||||+|++.++|++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~-------------------~-rg~afV~f~~~~~A~~ 67 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD-------------------Y-QLKAVVQMENLQDAIG 67 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS-------------------T-TCCEEEEESSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC-------------------C-CeEEEEEECCHHHHHH
Confidence 46799999999999999999 9999999999999976532 1 6799999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeeccCC
Q 013031 363 AIAELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 363 Av~~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
|++.||+..+.++.|+|.++..+..
T Consensus 68 Ai~~l~g~~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 68 AVNSLHRYKIGSKKILVSLATGASG 92 (96)
T ss_dssp HHHHHTTEEETTEEEEEEECCCSSC
T ss_pred HHHHhCCCEECCeEEEEEEcCCCCC
Confidence 9999999999999999999865443
No 78
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.62 E-value=1.1e-15 Score=127.71 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=71.3
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++|+++|+++|+.||.|+.|+|++++ +++ .+|||||+|++.++|++|++.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~-----------------~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGR-----------------SLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCC-----------------cceEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999998764 221 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 013031 367 LNDEGNWRSGLRVRLML 383 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~ 383 (451)
||+..+.++.|+|+++.
T Consensus 90 l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 90 YNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HTTCEETTEECEEEEEC
T ss_pred hCCCEeCCcEEEEEEeC
Confidence 99999999999999874
No 79
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1e-15 Score=128.82 Aligned_cols=80 Identities=19% Similarity=0.165 Sum_probs=72.0
Q ss_pred cccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 285 e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
....++|||+||+.++++++|+++|+.||.|..|+|..+ +|||||+|++.++|++|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----------------------~g~afV~f~~~~~a~~A~ 78 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----------------------KGYSFVRFSTHESAAHAI 78 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----------------------CCEEEEEECCHHHHHHHH
Confidence 345789999999999999999999999999999999642 789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeccCC
Q 013031 365 AELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
+.||+..++++.|+|.++..+..
T Consensus 79 ~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 79 VSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp HHHTTCEETTEECEEECCCCCCS
T ss_pred HHcCCCEECCcEEEEEecCCCCC
Confidence 99999999999999998865443
No 80
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=2e-15 Score=124.98 Aligned_cols=78 Identities=27% Similarity=0.254 Sum_probs=70.8
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Ln 368 (451)
++|||+|||.++|+++|+++|++||.|+.|++..+ .+|||||+|++.++|++|++.||
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----------------------PPGFAFVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----------------------SSSEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----------------------CCCEEEEEECCHHHHHHHHHHHC
Confidence 48999999999999999999999999999999643 27899999999999999999999
Q ss_pred CCCCCCCceEEEEeeccCCC
Q 013031 369 DEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 369 g~~~~~~gLrV~l~~~r~~k 388 (451)
+..++++.|+|+++..+..+
T Consensus 59 g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 59 GKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp HSCSSSCCCEEEESSSCCCS
T ss_pred CCeECCcEEEEEEccCCCCc
Confidence 99999999999998765543
No 81
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.62 E-value=6.3e-16 Score=132.63 Aligned_cols=84 Identities=21% Similarity=0.261 Sum_probs=73.3
Q ss_pred hcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHH
Q 013031 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (451)
Q Consensus 284 ~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekA 363 (451)
.+...++|||+||+.++|+++|+++|+.||.|..|+|++++.+++ .+|||||+|++.++|++|
T Consensus 32 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A 94 (124)
T 2jwn_A 32 KEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGH-----------------PKGYAYIEFAERNSVDAA 94 (124)
T ss_dssp HHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSS-----------------CEEEEEEEESSHHHHHHH
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCC-----------------cccEEEEEECCHHHHHHH
Confidence 344678999999999999999999999999999999987643322 389999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeecc
Q 013031 364 IAELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 364 v~~Lng~~~~~~gLrV~l~~~r 385 (451)
+ +||+..+.++.|+|.++...
T Consensus 95 ~-~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 95 V-AMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp H-TTTTCEETTEECEEEESSCC
T ss_pred H-hcCCCeECCeEEEEEECCCC
Confidence 9 79999999999999987643
No 82
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.62 E-value=7.1e-16 Score=139.57 Aligned_cols=82 Identities=18% Similarity=0.140 Sum_probs=73.0
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCC--ceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG--~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
..++|||+||++++|+++|+++|+.|| .|..|+|++++.+++ .||||||+|++.++|++||
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~-----------------skGfaFV~f~~~~~A~~Ai 116 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQ-----------------SKGYAEVVVASENSVHKLL 116 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCC-----------------EEEEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHH
Confidence 457999999999999999999999999 999999988764432 3899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeecc
Q 013031 365 AELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~r 385 (451)
+.||+..+.++.|+|+++..+
T Consensus 117 ~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 117 ELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp HHSTTCEETTEECEEEECCHH
T ss_pred HHcCCCEECCeEeEEEEcCCC
Confidence 999999999999999988653
No 83
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=128.21 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=69.3
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||+++++++|+++|+.||.|..|+|+++ ||||||||++.++|++|++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~~ 70 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----------------------KNQAFLELATEEAAITMVNY 70 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999998632 78999999999999999998
Q ss_pred Hc--CCCCCCCceEEEEeeccCCC
Q 013031 367 LN--DEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 367 Ln--g~~~~~~gLrV~l~~~r~~k 388 (451)
|+ +..+.++.|+|.++..+..+
T Consensus 71 l~~~~~~~~Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 71 YSAVTPHLRNQPIYIQYSNHKELK 94 (101)
T ss_dssp HHHSCCEETTEECEEEECSCSSCC
T ss_pred hccCCceECCcEEEEEEcCcccCc
Confidence 75 45578888999998765544
No 84
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.62 E-value=8.3e-16 Score=123.78 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=68.4
Q ss_pred cccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 285 e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
+...++|||+|||.++++++|+++|+.||.|..|+|.+++.+++ .+|||||+|++.++|++|+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~ 70 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGR-----------------SRGFGFILFKDAASVEKVL 70 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCC-----------------EEEEEEEEESSTHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCc-----------------cccEEEEEECCHHHHHHHH
Confidence 34678999999999999999999999999999999987654322 3899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEe
Q 013031 365 AELNDEGNWRSGLRVRLM 382 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~ 382 (451)
+ +++..++++.|+|+.+
T Consensus 71 ~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 71 D-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp H-SSCEEETTEEEEEEEC
T ss_pred H-hCCCEECCEEEEEEeC
Confidence 6 5777788888888754
No 85
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4.4e-16 Score=129.82 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=73.2
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|+.||.|..|+|++++.+++ .+|||||+|++.++|++|++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~a~~ 76 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQ-----------------SRGFGFVKFKDPNCVGTVLA 76 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCC-----------------EEEEEEEEESSTTHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCC-----------------cceEEEEEECCHHHHHHHHH
Confidence 3578999999999999999999999999999999987653322 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
. |+..+.++.|+|+++..+...
T Consensus 77 ~-~~~~~~g~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 77 S-RPHTLDGRNIDPKPCTPRGMQ 98 (105)
T ss_dssp H-CSEEETTEEEBCCCSCCSSCC
T ss_pred h-CCCeECCEEEEEEEccCCCCC
Confidence 8 998888888888887655443
No 86
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.2e-15 Score=124.05 Aligned_cols=76 Identities=22% Similarity=0.270 Sum_probs=69.0
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++|+++|+++|++||.|+.|++... +|||||+|++.++|++|++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----------------------~g~afV~f~~~~~A~~A~~~ 72 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----------------------DSFAYIQYESLDAAQAACAK 72 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----------------------SCCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999998521 68999999999999999999
Q ss_pred HcCCCCC--CCceEEEEeecc
Q 013031 367 LNDEGNW--RSGLRVRLMLRR 385 (451)
Q Consensus 367 Lng~~~~--~~gLrV~l~~~r 385 (451)
||+..+. ++.|+|.++..+
T Consensus 73 l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 73 MRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp HTTCBCSSSSCBCEEEECCCC
T ss_pred HCCCEeCCCCcEEEEEECCCC
Confidence 9999998 788999988654
No 87
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.61 E-value=5.5e-16 Score=135.16 Aligned_cols=82 Identities=11% Similarity=0.146 Sum_probs=72.5
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEE--EEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~--Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekA 363 (451)
...++|||+||++++|+++|+++|++||.|.. |+|++++.+++ .||||||+|++. +|++|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~-----------------~rG~aFV~f~~~-~a~~A 82 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQL-----------------NRGFAFIQLSTI-EAAQL 82 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSS-----------------BCSCEEEECCHH-HHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCC-----------------cceEEEEEECCH-HHHHH
Confidence 45689999999999999999999999999977 99987764332 389999999999 99999
Q ss_pred HHHHcCC----CCCCCceEEEEeecc
Q 013031 364 IAELNDE----GNWRSGLRVRLMLRR 385 (451)
Q Consensus 364 v~~Lng~----~~~~~gLrV~l~~~r 385 (451)
++.||+. .+.++.|+|+++..+
T Consensus 83 i~~l~g~~~~~~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 83 LQILQALHPPLTIDGKTINVEFAKGS 108 (131)
T ss_dssp HHHHTTCCCSCCGGGCCCCCEECCCS
T ss_pred HHHhcCCCCCccCCCEEEEEEECCCC
Confidence 9999999 899999999988653
No 88
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3e-15 Score=125.39 Aligned_cols=83 Identities=19% Similarity=0.173 Sum_probs=71.5
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCc-eEEEEEe-CCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS-VKTIRTC-LPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~-V~~Vri~-~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
..++|||+|||.++|+++|+++|+.||. |..|++. .++.+++ .+|||||+|++.++|++|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~-----------------~~g~afV~f~~~~~A~~A~ 69 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMK-----------------NRGFAFVEYESHRAAAMAR 69 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTT-----------------TCCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCC-----------------cCcEEEEEecCHHHHHHHH
Confidence 5689999999999999999999999998 9999986 4433221 3899999999999999999
Q ss_pred HHHc--CCCCCCCceEEEEeeccC
Q 013031 365 AELN--DEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 365 ~~Ln--g~~~~~~gLrV~l~~~r~ 386 (451)
+.|+ +..++++.|+|.++..+.
T Consensus 70 ~~l~~g~~~~~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 70 RKLMPGRIQLWGHQIAVDWAEPEI 93 (109)
T ss_dssp TTTTTCCSCBTTBCCEEEESCSSC
T ss_pred HHhhCCCceecCCeEEEEEcCCCC
Confidence 9996 478889999999987543
No 89
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.3e-15 Score=126.82 Aligned_cols=78 Identities=21% Similarity=0.191 Sum_probs=70.2
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||+++|+++|+++|++||.|+.|+|.. .|||||+|++.++|++||+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~------------------------~g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR------------------------DGTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET------------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec------------------------CCEEEEEECCHHHHHHHHHH
Confidence 467999999999999999999999999999999852 27999999999999999999
Q ss_pred HcCCCCCC-----CceEEEEeeccCCC
Q 013031 367 LNDEGNWR-----SGLRVRLMLRRGSK 388 (451)
Q Consensus 367 Lng~~~~~-----~gLrV~l~~~r~~k 388 (451)
||+..+.+ +.|+|.++..+...
T Consensus 70 l~g~~~~g~~~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 70 LDNTKFRSHEGETAYIRVKVDGPRSPS 96 (108)
T ss_dssp SSSEEEECTTSCEEEEEEEESSCCSCC
T ss_pred HCcCCccCCcCcceEEEEEeCCCCCCC
Confidence 99998888 78999998776554
No 90
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.61 E-value=1e-15 Score=129.74 Aligned_cols=84 Identities=13% Similarity=0.128 Sum_probs=70.6
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+||+.++|+++|+++|+.||.|..|+|.+++.+++ .+|||||+|++.++|++|++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~-----------------~kg~afV~f~~~~~A~~Ai~ 85 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR-----------------SRGFGFVTFMDQAGVDKVLA 85 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCC-----------------CTTCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCC-----------------cCcEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999987654322 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
.++ ..+.++.|+|+++..+..
T Consensus 86 ~~~-~~l~g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 86 QSR-HELDSKTIDPKVAFPRRA 106 (109)
T ss_dssp SSC-EEETTEEEEEEECCCCCC
T ss_pred HCC-CcCCCEEEEEEEccCCCC
Confidence 865 778888899998876544
No 91
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=5.9e-16 Score=121.49 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=67.8
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Ln 368 (451)
++|||+|||.++++++|+++|++||.|..|++.+++.+++ .+|||||+|++.++|++|++.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR-----------------SRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSS-----------------CSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCC-----------------cCceEEEEEcCHHHHHHHHHhCC
Confidence 5799999999999999999999999999999987643222 38999999999999999999999
Q ss_pred CCCCCCCceEEEEe
Q 013031 369 DEGNWRSGLRVRLM 382 (451)
Q Consensus 369 g~~~~~~gLrV~l~ 382 (451)
..+.++.|+|+++
T Consensus 64 -~~~~g~~l~v~~a 76 (77)
T 1uaw_A 64 -HELDSKTIDPKVA 76 (77)
T ss_dssp -CCCSSCCCEEEEC
T ss_pred -CccCCEEEEEEec
Confidence 8888999999875
No 92
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.61 E-value=7.6e-16 Score=122.97 Aligned_cols=73 Identities=25% Similarity=0.295 Sum_probs=64.0
Q ss_pred ceEEEEcCCCCcc------cHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHH
Q 013031 288 SRIVVAENLPEDH------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (451)
Q Consensus 288 ~RTVyV~nLP~d~------t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAe 361 (451)
+++|||+|||.++ ++++|+++|++||.|..|+|.+ .++ ..||||||+|++.++|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g-----------------~~~g~afV~f~~~~~A~ 61 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDG-----------------KTKGYIFLEYASPAHAV 61 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTT-----------------BCCCEEEEEESSHHHHH
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCC-----------------cEeEEEEEEECCHHHHH
Confidence 3799999999999 7899999999999999999852 111 13899999999999999
Q ss_pred HHHHHHcCCCCCCC-ceEE
Q 013031 362 KAIAELNDEGNWRS-GLRV 379 (451)
Q Consensus 362 kAv~~Lng~~~~~~-gLrV 379 (451)
+|++.||+..+.++ .|+|
T Consensus 62 ~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 62 DAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHhcCcccCCceeEEe
Confidence 99999999999888 7876
No 93
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1e-15 Score=129.57 Aligned_cols=82 Identities=18% Similarity=0.253 Sum_probs=72.9
Q ss_pred cccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 285 e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
....++|||+||+.++++++|+++|++||.|+.|+|.+++. ..+|||||+|++.++|++|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-------------------~~kg~afV~f~~~~~A~~Ai 86 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-------------------GSKGFGFVTFENSADADRAR 86 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-------------------BCTTEEEEECCCSHHHHHHH
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-------------------CCceEEEEEECCHHHHHHHH
Confidence 34678999999999999999999999999999999976531 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeecc
Q 013031 365 AELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~r 385 (451)
+.||+..++++.|+|+++..+
T Consensus 87 ~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 87 EKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp HHHTTCEETTEECEEEECCCS
T ss_pred HHcCCCEECCEEEEEEECCCC
Confidence 999999999999999988654
No 94
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.61 E-value=8.7e-16 Score=127.56 Aligned_cols=73 Identities=21% Similarity=0.142 Sum_probs=68.1
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
+..|||+||++.+|+++|+++|.+||+|+++++.. .||||||||.+.++|++|++.|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----------------------~kGfaFVey~~~~eA~~Ai~~L 63 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----------------------NQGIALCKYTTREEANKAQMAL 63 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHHH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----------------------CCcEEEEEECCHHHHHHHHHHh
Confidence 45899999999999999999999999999999853 2899999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 013031 368 NDEGNWRSGLRVRLML 383 (451)
Q Consensus 368 ng~~~~~~gLrV~l~~ 383 (451)
|+..+.++.|+|+++.
T Consensus 64 n~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 64 NNCVLANTTIFAESPS 79 (89)
T ss_dssp TTEEETTEEEEEECCC
T ss_pred cCCEECCcEEEEEECC
Confidence 9999999999999874
No 95
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.2e-15 Score=127.35 Aligned_cols=81 Identities=22% Similarity=0.206 Sum_probs=71.3
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++|+++|+++|+.||.|..|+|..++ ++ ..+|||||+|++.++|++|++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g-----------------~~~g~afV~f~~~~~a~~A~~ 84 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SG-----------------TSRGVGFARMESTEKCEAVIG 84 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SS-----------------CEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CC-----------------CcceEEEEEECCHHHHHHHHH
Confidence 456899999999999999999999999999999998764 21 138999999999999999999
Q ss_pred HHcCCCC--------CCCceEEEEeec
Q 013031 366 ELNDEGN--------WRSGLRVRLMLR 384 (451)
Q Consensus 366 ~Lng~~~--------~~~gLrV~l~~~ 384 (451)
.||+..+ +++.|+|+++..
T Consensus 85 ~l~g~~~~~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 85 HFNGKFIKTPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp HHBTCCCCCCTTSCCCSSCBEEEECCC
T ss_pred HhCCCEEcCCccccCCCCceeEEccCC
Confidence 9999888 677899998863
No 96
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=124.55 Aligned_cols=78 Identities=26% Similarity=0.311 Sum_probs=68.9
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++++++|+++|+.||.|. ++++..+ .+|||||+|++.++|++|++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~---------------------~~g~afV~f~~~~~a~~A~~~ 75 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQG---------------------PRRRAFLHYPDSAAAQQAVSC 75 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEET---------------------TTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCC---------------------CCcEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999997 6664321 289999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccC
Q 013031 367 LNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~ 386 (451)
||+..+.++.|+|.++..+.
T Consensus 76 l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 76 LQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp HTTCCSSSSCCEEEECCCCC
T ss_pred hCCCEECCcEEEEEEcCCCC
Confidence 99999999999999986543
No 97
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.61 E-value=4.3e-16 Score=126.20 Aligned_cols=81 Identities=22% Similarity=0.269 Sum_probs=69.6
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Ln 368 (451)
|+|||+|||.++++++|+++|+.||.|..|++.+++.+++ .+|||||+|++.+ |++|++.||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~-a~~a~~~l~ 63 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKK-----------------PKGFGFVEMQEES-VSEAIAKLD 63 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCC-----------------CCEEEEEEECTTH-HHHHHHTSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCC-----------------cceEEEEEECCHH-HHHHHHHhC
Confidence 6899999999999999999999999999999987654322 3899999999999 999999999
Q ss_pred CCCCCCCceEEEEeeccCC
Q 013031 369 DEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 369 g~~~~~~gLrV~l~~~r~~ 387 (451)
+..+.++.|+|+++..+..
T Consensus 64 g~~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 64 NTDFMGRTIRVTEANPKKS 82 (90)
T ss_dssp SSCCSSSSCSEEEC-----
T ss_pred CCEECCeEEEEEEcCCCCC
Confidence 9999999999999876543
No 98
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.60 E-value=3.2e-15 Score=128.57 Aligned_cols=84 Identities=17% Similarity=0.146 Sum_probs=74.2
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+||+.++++++|+++|+.||.|+.|+|.+++ +++ .+|||||+|++.++|++|++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~-----------------~~g~afV~f~~~~~A~~Ai~ 94 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGR-----------------SLGTADVHFERRADALKAMK 94 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSS-----------------CCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCC-----------------EeeEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999998764 221 28999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
.||+..+.++.|+|+++.....
T Consensus 95 ~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 95 QYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp HHTTEESSSCEEEEEEECCTTC
T ss_pred HcCCCEECCcEEEEEEeCCCCC
Confidence 9999999999999999876443
No 99
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=5.9e-17 Score=137.91 Aligned_cols=86 Identities=20% Similarity=0.256 Sum_probs=74.9
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEE--------EEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--------IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~--------Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~ 357 (451)
...++|||+|||.++++++|+++|++||.|.. |+|..++.+++ .+|||||+|++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~-----------------~~g~afV~f~~~ 67 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGK-----------------LKGEATVSFDDP 67 (116)
Confidence 45789999999999999999999999999998 88876543221 389999999999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEeeccCCC
Q 013031 358 ELAEKAIAELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 358 EdAekAv~~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
++|++|++.||+..+.++.|+|+++..+...
T Consensus 68 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 68 PSAKAAIDWFDGKEFSGNPIKVSFATRRADF 98 (116)
Confidence 9999999999999999999999998876554
No 100
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=8.3e-16 Score=130.31 Aligned_cols=87 Identities=18% Similarity=0.208 Sum_probs=74.9
Q ss_pred ccceEEEEcCCCCcccHHHHH---HHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLM---KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~---e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAek 362 (451)
.+.++|||+|||.++++++|+ ++|++||.|..|+|..++.+++. ...+|||||+|++.++|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~--------------~~~~G~afV~f~~~~~A~~ 78 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGS--------------QGPSASAYVTYIRSEDALR 78 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSS--------------SCCCEEEEEEESSHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCcc--------------CCCCeEEEEEECcHHHHHH
Confidence 457899999999999999999 99999999999999876543211 1237999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeeccC
Q 013031 363 AIAELNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 363 Av~~Lng~~~~~~gLrV~l~~~r~ 386 (451)
|++.||+..+.++.|+|.++..+.
T Consensus 79 Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 79 AIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp HHHHHTTEEETTEEEEEESCCCCS
T ss_pred HHHHhCCCEECCEEEEEEeccccc
Confidence 999999999999999999887654
No 101
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.6e-15 Score=131.06 Aligned_cols=116 Identities=13% Similarity=0.090 Sum_probs=85.6
Q ss_pred CHHHHHHHhhcCcceEEeecccccccCCCCcchhhhcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCC
Q 013031 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (451)
Q Consensus 249 d~~~I~~ALr~S~~LeVsedg~kVRR~~Pl~e~~~~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~ 328 (451)
+.+....||+......+.....+|+...+.. .......++|||+|||.++|+++|+++|+.||.|..|++..+..++.
T Consensus 50 ~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~--~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~ 127 (166)
T 3md3_A 50 QSHDANIALQTLNGKQIENNIVKINWAFQSQ--QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGS 127 (166)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCCC--CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCC
T ss_pred CHHHHHHHHHHcCCCccCCCeeEEEEcCCCC--CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCC
Confidence 3445555665444444432222333322211 11234578999999999999999999999999999999987643222
Q ss_pred CCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEee
Q 013031 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLML 383 (451)
Q Consensus 329 ~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~l~~ 383 (451)
.+|||||+|++.++|++|++.||+..+.++.|+|.++.
T Consensus 128 -----------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 128 -----------------SRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp -----------------EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred -----------------cceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 38999999999999999999999999999999999874
No 102
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=127.08 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=69.3
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCC-CCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQ-TSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~-~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
...++|||+||+.++++++|+++|+.|| |..|+|.+++ .+++ .+|||||+|++.++|++|+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~-----------------~~g~afV~f~~~~~a~~Ai 78 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPER-----------------LKGFGYAEFEDLDSLLSAL 78 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCC-----------------CCSCEEEEECCHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCc-----------------cCeEEEEEECCHHHHHHHH
Confidence 4578999999999999999999999999 9999997664 2221 3899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeecc
Q 013031 365 AELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~r 385 (451)
.||+..+.++.|+|+++..+
T Consensus 79 -~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 79 -SLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp -HTTTCCBTTBCCCCEECCCS
T ss_pred -hcCCCEECCeEEEEEeccCC
Confidence 89999999999999987643
No 103
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=7.2e-16 Score=126.80 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=70.5
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++++++|+++|+.||.|..++++.++.++ ..+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g-----------------~~~g~afV~f~~~~~a~~Ai~~ 76 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKG-----------------MPTGEAMVAFESRDEATAAVID 76 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSS-----------------CEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCC-----------------CeeeEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999877776554322 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeec
Q 013031 367 LNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~ 384 (451)
||+..+.++.|+|.++..
T Consensus 77 l~g~~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 77 LNDRPIGSRKVKLVLGSG 94 (98)
T ss_dssp TTTCEETTEECEEEESSC
T ss_pred hCCCeeCCeEEEEEEcCC
Confidence 999999999999998754
No 104
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.2e-15 Score=131.72 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=68.6
Q ss_pred cceEEEEcCCCCc-ccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 287 QSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 287 ~~RTVyV~nLP~d-~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
..++|||+|||++ +|+++|+++|+.||+|.+|+|.+. ||||||||++.++|++|++
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~ 80 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-----------------------KSQAFIEMETREDAMAMVD 80 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-----------------------TTEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 4689999999998 999999999999999999999631 7899999999999999999
Q ss_pred HHcC--CCCCCCceEEEEeeccCC
Q 013031 366 ELND--EGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng--~~~~~~gLrV~l~~~r~~ 387 (451)
.||+ ..+.++.|+|.++..+..
T Consensus 81 ~l~~~~~~l~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 81 HCLKKALWFQGRCVKVDLSEKYKK 104 (112)
T ss_dssp HHHHSCCCSSSSCCEEEEECSCSS
T ss_pred HhccCCceECCEEEEEEECccccc
Confidence 9875 347888999999865443
No 105
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.60 E-value=1.4e-15 Score=119.15 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=66.1
Q ss_pred EEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 013031 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (451)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng 369 (451)
+|||+|||.++++++|+++|+.||.|..|++..++.+++ ++|||||+|++.++|++|++ ||+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~a~~-~~~ 62 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNR-----------------HRGFGFVTFESEDIVEKVCE-IHF 62 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTT-----------------SCBEEEEECSCHHHHHHHHS-SSC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCC-----------------cCcEEEEEECCHHHHHHHHH-CCC
Confidence 489999999999999999999999999999876643221 38999999999999999998 999
Q ss_pred CCCCCCceEEEEe
Q 013031 370 EGNWRSGLRVRLM 382 (451)
Q Consensus 370 ~~~~~~gLrV~l~ 382 (451)
..+.++.|+|+.+
T Consensus 63 ~~~~g~~l~v~~A 75 (75)
T 2mss_A 63 HEINNKMVECKKA 75 (75)
T ss_dssp CCSSSCCCEEECC
T ss_pred CEECCEEEEEEeC
Confidence 9999999998753
No 106
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.60 E-value=1.6e-15 Score=133.62 Aligned_cols=85 Identities=18% Similarity=0.170 Sum_probs=74.6
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++|+++|+++|+.||.|+.|+|..++.+++ .+|||||+|++.++|++|++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~-----------------~~G~afV~F~~~~~A~~Ai~ 107 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE-----------------SRGFAFVRFHDKRDAEDAMD 107 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSS-----------------CCSCCEEECSCHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHHH
Confidence 3578999999999999999999999999999999976643222 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
.||+..++++.|+|+++..+..
T Consensus 108 ~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 108 AMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp TTTTCCSSSSCCEEEECCCCCC
T ss_pred HcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999999865433
No 107
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.7e-15 Score=124.67 Aligned_cols=83 Identities=19% Similarity=0.192 Sum_probs=69.8
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|+.||.|+.|+|.+++.+++ .+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~ 75 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGH-----------------SKGFGFVRFTEYETQVKVMS 75 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCS-----------------EEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCC-----------------ccceEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999987653322 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
. +..+.++.|+|+++..+..
T Consensus 76 ~--~~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 76 Q--RHMIDGRWCDCKLPNSKQS 95 (103)
T ss_dssp S--CEEETTEEEEEECCCTTCC
T ss_pred c--CCeeCCeEEEEEecCCCCc
Confidence 4 4567777888888865443
No 108
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.4e-16 Score=123.89 Aligned_cols=76 Identities=22% Similarity=0.291 Sum_probs=65.7
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++++++|+++|+.||.|..|+|..++.+++ .+|||||+|++.++|++|++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~~ 66 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNK-----------------CKGYGFVDFDSPSAAQKAVTA 66 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCS-----------------CCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC-----------------cCcEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987653322 389999999999999999999
Q ss_pred HcCCCCCCCceEE
Q 013031 367 LNDEGNWRSGLRV 379 (451)
Q Consensus 367 Lng~~~~~~gLrV 379 (451)
||+..+.++-|+|
T Consensus 67 l~g~~~~g~~~~~ 79 (85)
T 1x4e_A 67 LKASGVQAQMAKQ 79 (85)
T ss_dssp HHHHTCCEESCCS
T ss_pred hcCCeEeeEEEee
Confidence 9998766655544
No 109
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=131.49 Aligned_cols=80 Identities=26% Similarity=0.355 Sum_probs=70.4
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|++||.|+.|+|.+++.+++ .+|||||+|++.++|++|++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~ 123 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEK-----------------HRGFAFVEFELAEDAAAAID 123 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCC-----------------CCSEEEEEESCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCC-----------------cCcEEEEEECCHHHHHHHHH
Confidence 3578999999999999999999999999999999977643222 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 013031 366 ELNDEGNWRSGLRVRLM 382 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~ 382 (451)
.||+..+.++.|+|+++
T Consensus 124 ~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 124 NMNESELFGRTIRVNLA 140 (140)
T ss_dssp HSTEEEETTEEEEEEC-
T ss_pred HhCCCEECCEEEEEEeC
Confidence 99999998888988764
No 110
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.59 E-value=2.9e-15 Score=135.50 Aligned_cols=86 Identities=24% Similarity=0.328 Sum_probs=74.6
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|+.||.|..|+|+.++.++. .+|||||+|.+.++|++||+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~Ai~ 132 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGF-----------------SKGYALVEYETHKQALAAKE 132 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSS-----------------EEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCc-----------------EeeEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999987653322 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
.||+..++++.|+|.++..+..+
T Consensus 133 ~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 133 ALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHTTCEETTEECEEEESEECC--
T ss_pred HhCCCEECCEEEEEEEecCCCCC
Confidence 99999999999999999876554
No 111
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2e-15 Score=120.83 Aligned_cols=74 Identities=19% Similarity=0.187 Sum_probs=67.4
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|++||.|..|++.++ ||||||+|++.++|++|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----------------------kg~afV~f~~~~~A~~a~~ 66 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----------------------QQCAFIQFATRQAAEVAAE 66 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----------------------GTEEEEEESSHHHHHHHHH
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 35689999999999999999999999999999998632 7899999999999999999
Q ss_pred HH-cCCCCCCCceEEEEe
Q 013031 366 EL-NDEGNWRSGLRVRLM 382 (451)
Q Consensus 366 ~L-ng~~~~~~gLrV~l~ 382 (451)
.| |+..+.++.|+|+++
T Consensus 67 ~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 67 KSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp TTTTTCEETTEECCEEEC
T ss_pred HhcCCeeECCCEEEEEec
Confidence 99 888888888988875
No 112
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.59 E-value=7.6e-16 Score=125.77 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=69.4
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++|+++|+++|++||.|..++++.++.++ ..+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g-----------------~~~g~afV~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKG-----------------MPTGEAMVAFESRDEATAAVID 76 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTS-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCC-----------------CEeeEEEEEECCHHHHHHHHHH
Confidence 35899999999999999999999999999888877654322 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 013031 367 LNDEGNWRSGLRVRLML 383 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~ 383 (451)
||+..+.++.|+|.+..
T Consensus 77 l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 77 LNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp HTTCEETTEECEEECCC
T ss_pred hCCCeECCcEEEEEecc
Confidence 99999999999998754
No 113
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.3e-15 Score=122.73 Aligned_cols=75 Identities=24% Similarity=0.271 Sum_probs=68.3
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcC--CceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAV--GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~f--G~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
..++|||+|||.++|+++|+++|+.| |.|..|++. +|||||+|++.++|++|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------------------------~g~afV~f~~~~~A~~A~ 68 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------------------------RDYAFVHFSNREDAVEAM 68 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------------------------SSEEEEEESSHHHHHHHH
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------------------------CCeEEEEeCCHHHHHHHH
Confidence 56899999999999999999999999 999999863 679999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeccC
Q 013031 365 AELNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~r~ 386 (451)
+.||+..+.++.|+|.++..+.
T Consensus 69 ~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 69 KALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp HHHSSEEETTEEEEEECCCCCC
T ss_pred HHhCCCEeCCcEEEEEECCCCC
Confidence 9999999999889999886543
No 114
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.2e-15 Score=126.57 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=68.1
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||+++|+++|+++|+.||. ..|+|++++ +++ .||||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~-----------------~~G~afV~F~~~~~a~~Al~ 73 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGR-----------------VTGEADVEFATHEDAVAAMA 73 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSC-----------------EEEEEEEECSSSHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCC-----------------EeeEEEEEECCHHHHHHHHH
Confidence 35679999999999999999999999995 499998764 221 38999999999999999995
Q ss_pred HHcCCCCCCCceEEEEeec
Q 013031 366 ELNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~ 384 (451)
+|+..+.++.|+|.+...
T Consensus 74 -~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 74 -KDKANMQHRYVELFLNST 91 (102)
T ss_dssp -TSSCCSSSSCCEEEEECC
T ss_pred -hCCCeECCcEEEEEECCC
Confidence 899999999999987764
No 115
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.4e-15 Score=125.87 Aligned_cols=75 Identities=19% Similarity=0.235 Sum_probs=67.8
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+||+.++++++|+++|+.||.|..|++.+ .||||||+|++.++|++|++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----------------------~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----------------------EKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999862 278999999999999999999
Q ss_pred HcCCCCCCCceEEEEeec
Q 013031 367 LNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~ 384 (451)
||+..+.++.|+|+++..
T Consensus 83 l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 83 LANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp HTTCEETTEECCCCBCCC
T ss_pred hCCCeECCeEEEEEeccC
Confidence 999998888888877643
No 116
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.59 E-value=2.2e-15 Score=127.69 Aligned_cols=79 Identities=28% Similarity=0.344 Sum_probs=70.4
Q ss_pred hcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHH
Q 013031 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (451)
Q Consensus 284 ~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekA 363 (451)
.+...++|||+||+.++|+++|+++|++||.|+.|+++ +|||||+|++.++|++|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------------------------kg~afV~f~~~~~A~~A 81 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------------------------NGFAFVEFEEAESAAKA 81 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------------------------TTEEEEECSSHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEECCHHHHHHH
Confidence 34567899999999999999999999999999999984 67999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeeccCC
Q 013031 364 IAELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 364 v~~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
++.||+..+.++.|+|.++..+..
T Consensus 82 i~~l~g~~~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 82 IEEVHGKSFANQPLEVVYSKLPAK 105 (108)
T ss_dssp HHHHTTCEETTEECEEESCSCCC-
T ss_pred HHHcCCCEECCeEEEEEEecCCCC
Confidence 999999999999999998765443
No 117
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.58 E-value=4e-15 Score=135.00 Aligned_cols=85 Identities=18% Similarity=0.268 Sum_probs=70.4
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++|+++|+++|+.||.|..|++..++.+++ .+|||||+|++.++|++|++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK-----------------KRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCC-----------------ccceEEEEECCHHHHHHHHHh
Confidence 458999999999999999999999999999999987653222 389999999999999999986
Q ss_pred HcCCCCCCCceEEEEeeccCCCC
Q 013031 367 LNDEGNWRSGLRVRLMLRRGSKP 389 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~~k~ 389 (451)
++..+.++.|+|+++..+....
T Consensus 166 -~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 -KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp -SCCEETTEECEEEECC------
T ss_pred -CCcEECCEEEEEEecCChhHhc
Confidence 7888888999999998766543
No 118
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.58 E-value=4.5e-15 Score=123.19 Aligned_cols=74 Identities=20% Similarity=0.337 Sum_probs=68.3
Q ss_pred ccceEEEEcCCCC-cccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 286 LQSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 286 ~~~RTVyV~nLP~-d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
...++|||+||+. ++++++|+++|+.||.|..|+|. +|||||+|++.++|++|+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~Ai 74 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------------------------NAFGFIQFDNPQSVRDAI 74 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------------------------SSEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------------------CCEEEEEECCHHHHHHHH
Confidence 4578999999998 99999999999999999999982 789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeec
Q 013031 365 AELNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~ 384 (451)
+.||+..+.++.|+|.++..
T Consensus 75 ~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 75 EXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp HHHTTSEETTEECEEEECCC
T ss_pred HHcCCCEECCEEEEEEecCC
Confidence 99999999899999998754
No 119
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=9.4e-16 Score=126.97 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=69.9
Q ss_pred cccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 285 e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
....++|||+|||.++|+++|+++|+.||.|.. +++.+..+ ...+|||||+|++.++|++|+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~-----------------g~~~g~afV~f~~~~~a~~A~ 75 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRT-----------------GTNRKFGYVDFESAEDLEKAL 75 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEE-----------------ETTTTEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCC-----------------CCcCcEEEEEECCHHHHHHHH
Confidence 345789999999999999999999999999887 44433211 123899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeccCC
Q 013031 365 AELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
+ ||+..+.++.|+|.++..+..
T Consensus 76 ~-l~g~~~~g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 76 E-LTGLKVFGNEIKLEKPKGRDG 97 (101)
T ss_dssp H-GGGCCBTTBCCEEECCSCCCC
T ss_pred h-cCCcEECCcEEEEEEcCCCCC
Confidence 8 999999999999998865443
No 120
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.3e-15 Score=122.83 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=68.5
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCc-eEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS-VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~-V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
..++|||+|||.++|+++|+++|++||. |..+.+. .+|||||+|++.++|++|++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------------------------~~g~afV~f~~~~~A~~A~~ 62 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------------------------KSGYAFVDYPDQNWAIRAIE 62 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------------------------ETTEEEECCSCHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------------------------CCCEEEEEECCHHHHHHHHH
Confidence 5689999999999999999999999999 6666552 17899999999999999999
Q ss_pred HHcC-CCCCCCceEEEEeeccCCC
Q 013031 366 ELND-EGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 366 ~Lng-~~~~~~gLrV~l~~~r~~k 388 (451)
.||+ ..++++.|+|.++..+..+
T Consensus 63 ~l~g~~~~~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 63 TLSGKVELHGKIMEVDYSVSKKLR 86 (93)
T ss_dssp HHTTTCEETTEECEEEECCCCCCC
T ss_pred HccCCeeECCEEEEEEEccCcccc
Confidence 9999 8899999999998765443
No 121
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.58 E-value=6.1e-15 Score=124.83 Aligned_cols=80 Identities=24% Similarity=0.274 Sum_probs=71.8
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++|+++|+++|+.||.|..|+|.+++. .+|||||+|.+.++|++|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~--------------------~~g~afV~f~~~~~A~~A~~~ 66 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE--------------------TRGTAYVVYEDIFDAKNAVDH 66 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT--------------------TTTCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC--------------------CCcEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999975421 278999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccC
Q 013031 367 LNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~ 386 (451)
||+..+.++.|+|.++..+.
T Consensus 67 l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 67 LSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp HTTCBSSSCBCEEEECCHHH
T ss_pred cCCCEECCeEEEEEEecCCh
Confidence 99999999999999987543
No 122
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.58 E-value=2.9e-15 Score=132.88 Aligned_cols=78 Identities=23% Similarity=0.227 Sum_probs=71.1
Q ss_pred cccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 285 e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
....++|||+|||.++|+++|+++|+.||.|..|+|.++ .+|||||+|++.++|++|+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~ 127 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----------------------PPGFAFVEFEDPRDAADAV 127 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----------------------SCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----------------------CCcEEEEEECCHHHHHHHH
Confidence 345789999999999999999999999999999999643 2889999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeec
Q 013031 365 AELNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~ 384 (451)
+.||+..++++.|+|+++..
T Consensus 128 ~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 128 RELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp HHHSSSCSSSSCCEEEECCC
T ss_pred HHcCCCEECCeEEEEEEcCC
Confidence 99999999999999998864
No 123
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.8e-15 Score=128.79 Aligned_cols=82 Identities=10% Similarity=0.096 Sum_probs=72.0
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCce-EEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSV-KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V-~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
...++|||+|||+++|+++|+++|+.||.| ..|+|++++ +++ .+|||||+|++.++|++||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~-----------------~~G~afV~F~~~~~a~~Al 74 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQ-----------------GLGQALVQFKNEDDARKSE 74 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSS-----------------CSSCEEEECSSHHHHHHHG
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCC-----------------cceEEEEEECCHHHHHHHH
Confidence 356899999999999999999999999999 899998764 221 3899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeccC
Q 013031 365 AELNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~r~ 386 (451)
+. |+..+.++.|+|.++..+.
T Consensus 75 ~~-~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 75 RL-HRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp GG-CSEEETTEEEEEEEECHHH
T ss_pred Hh-CCCccCCeEEEEEECCHHH
Confidence 97 9988999999999987654
No 124
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.57 E-value=4.1e-15 Score=139.06 Aligned_cols=117 Identities=21% Similarity=0.221 Sum_probs=86.4
Q ss_pred CHHHHHHHhhcCcceEEeecccccccCCCCcchhhhcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCC
Q 013031 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (451)
Q Consensus 249 d~~~I~~ALr~S~~LeVsedg~kVRR~~Pl~e~~~~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~ 328 (451)
+.+.+..||+......+ .|+.++...............++|||+||+.++|+++|+++|++||.|+.|+|.+++.
T Consensus 66 ~~~~A~~Ai~~~~~~~~--~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~--- 140 (213)
T 4f02_A 66 QPADAERALDTMNFDVI--KGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--- 140 (213)
T ss_dssp SHHHHHHHHHHHTTCEE--TTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT---
T ss_pred CHHHHHHHHHHhhhhhc--CCcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC---
Confidence 34455556655443333 2333332222222222333567999999999999999999999999999999986531
Q ss_pred CCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeeccC
Q 013031 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 329 ~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~l~~~r~ 386 (451)
..||||||+|++.++|++|++.||+..+.++.|+|.++..+.
T Consensus 141 ----------------~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 141 ----------------GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp ----------------EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred ----------------CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 128999999999999999999999999999999999987653
No 125
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=3.9e-15 Score=123.23 Aligned_cols=81 Identities=27% Similarity=0.330 Sum_probs=67.9
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++|+++|+++|++||.| +++.+. ++ ..+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~-~g-----------------~~~g~afV~f~~~~~A~~A~~ 71 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQ-NG-----------------KSKGYAFIEFASFEDAKEALN 71 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCS-SS-----------------CBCSEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECC-CC-----------------CEeeEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999987 443321 11 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
.||+..+.++.|+|.++..+..
T Consensus 72 ~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 72 SCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp HTSSEEETTEEEEEEECSSCCC
T ss_pred HhCCCEeCCeEEEEEEcCCCCC
Confidence 9999999999999999876533
No 126
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.6e-15 Score=124.03 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=69.8
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCce----EEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSV----KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V----~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAek 362 (451)
..++|||+|||.++|+++|+++|+.||.| ..+++. ++ ..+|||||+|++.++|++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g-----------------~~~g~afV~f~~~~~a~~ 82 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TG-----------------RMRGQAFITFPNKEIAWQ 82 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CS-----------------SSCSEEEEECSSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CC-----------------ccceEEEEEECCHHHHHH
Confidence 56899999999999999999999999999 455543 11 138999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeeccCCC
Q 013031 363 AIAELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 363 Av~~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
|++.||+..+.++.|+|.++..+..+
T Consensus 83 Ai~~l~g~~~~g~~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 83 ALHLVNGYKLYGKILVIEFGKNKKQR 108 (115)
T ss_dssp HHHHSTTCBCSSCBCEEEECCCCSCC
T ss_pred HHHHhCCCEeCCcEEEEEEccCCCCC
Confidence 99999999999999999999765554
No 127
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9e-15 Score=122.52 Aligned_cols=79 Identities=23% Similarity=0.293 Sum_probs=68.9
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEE-EEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~-Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
..++|||+|||+++|+++|+++|+.||.|.. |+|+++. ++ ..+|||||+|++.++|++|++
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~-~g-----------------~~~G~afV~F~~~~~a~~A~~ 75 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDF-QG-----------------RSTGEAFVQFASQEIAEKALK 75 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCS-SS-----------------CBCSEEEEEESSHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECC-CC-----------------CcceEEEEEECCHHHHHHHHH
Confidence 5689999999999999999999999999987 8887652 21 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeec
Q 013031 366 ELNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~ 384 (451)
. |+..+.++.|+|.....
T Consensus 76 ~-~~~~~~gr~i~v~~~~~ 93 (104)
T 1wg5_A 76 K-HKERIGHRYIEIFKSSR 93 (104)
T ss_dssp T-TTCCSSSSCCEEEEECT
T ss_pred h-CcchhCCcEEEEEECCH
Confidence 7 99999999999988754
No 128
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.57 E-value=2.7e-15 Score=128.90 Aligned_cols=78 Identities=18% Similarity=0.109 Sum_probs=68.9
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCC-ceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
..++|||+|||+++++++|+++|+.|| +|..|+|...+ .+|||||+|++.++|++|++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~---------------------~rGfaFV~F~~~e~A~~Ai~ 85 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD---------------------FDGTGALEFPSEEILVEALE 85 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS---------------------SSCCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC---------------------CCCEEEEEECCHHHHHHHHH
Confidence 467999999999999999999999999 99999984211 28999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 013031 366 ELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r 385 (451)
.||+..+.++.|+|+++...
T Consensus 86 ~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 86 RLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp HTTTEEETTEEEEEEESCC-
T ss_pred HcCCCEECCeEEEEEECCCC
Confidence 99999999999999987543
No 129
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.57 E-value=4.8e-15 Score=124.87 Aligned_cols=73 Identities=23% Similarity=0.174 Sum_probs=67.9
Q ss_pred cceEEEEcCCCCc-ccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 287 QSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 287 ~~RTVyV~nLP~d-~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
..++|||+||+.+ +++++|+++|++||.|..|+|. +|||||+|++.++|++|++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~A~~ 80 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-------------------------KGYAFVQYSNERHARAAVL 80 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-------------------------TTEEEEECSSSHHHHHHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-------------------------CCEEEEEECCHHHHHHHHH
Confidence 3589999999999 9999999999999999999881 7899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeec
Q 013031 366 ELNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~ 384 (451)
.||+..+.++.|+|.++..
T Consensus 81 ~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 81 GENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp HHTTCEETTEECCEEESCC
T ss_pred HcCCCEECCeEEEEEECCC
Confidence 9999999999999999864
No 130
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.57 E-value=2.9e-15 Score=125.76 Aligned_cols=79 Identities=24% Similarity=0.283 Sum_probs=69.3
Q ss_pred cceEEEEcCCCCcc------cHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHH
Q 013031 287 QSRIVVAENLPEDH------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (451)
Q Consensus 287 ~~RTVyV~nLP~d~------t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdA 360 (451)
..++|||+|||.++ |+++|+++|++||.|..|+|.+ .++ ..+|||||+|++.++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g-----------------~~~G~afV~f~~~~~A 74 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDG-----------------KTKGYIFLEYASPAHA 74 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTT-----------------BSCCEEEEEECSSSHH
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCC-----------------CeeeEEEEEECCHHHH
Confidence 46899999999999 7899999999999999999862 211 1389999999999999
Q ss_pred HHHHHHHcCCCCCCC-ceEEEEeec
Q 013031 361 EKAIAELNDEGNWRS-GLRVRLMLR 384 (451)
Q Consensus 361 ekAv~~Lng~~~~~~-gLrV~l~~~ 384 (451)
++|++.||+..+.++ .|+|.++..
T Consensus 75 ~~Ai~~l~g~~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 75 VDAVKNADGYKLDKQHTFRVNLFTD 99 (105)
T ss_dssp HHHHHHCSSEECSTTCEEEEECSCC
T ss_pred HHHHHHhCCcccCCCceEEEEEcch
Confidence 999999999999998 899998754
No 131
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.57 E-value=7.6e-15 Score=130.28 Aligned_cols=80 Identities=18% Similarity=0.306 Sum_probs=69.8
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++|+++|+++|+.||.|..|++.++.+ + ..+|||||+|++.++|++|++
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g-----------------~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-G-----------------LSRGCAFVTFTTRAMAQTAIK 154 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-C-----------------CEEEEEEEEECCHHHHHHHHH
Confidence 3578999999999999999999999999999999976532 1 138999999999999999999
Q ss_pred HHcCCCCCC---CceEEEEee
Q 013031 366 ELNDEGNWR---SGLRVRLML 383 (451)
Q Consensus 366 ~Lng~~~~~---~gLrV~l~~ 383 (451)
.||+..+++ +.|+|++++
T Consensus 155 ~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 155 AMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHTTSCCCTTCSSCCEEEECC
T ss_pred HhcCCcccCCCCCCeEEEecC
Confidence 999987764 789998863
No 132
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.57 E-value=5.6e-15 Score=136.02 Aligned_cols=85 Identities=20% Similarity=0.253 Sum_probs=75.2
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+||+.++|+++|+++|++||.|+.|++.++..+++ .+|||||+|++.++|++|++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~-----------------~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGK-----------------HKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCC-----------------cCceEEEEecCHHHHHHHHH
Confidence 4568999999999999999999999999999999987643222 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
.||+..+.++.|+|.++..+..
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCSS
T ss_pred HccCCEeCCcEEEEEEecCCCC
Confidence 9999999999999999876543
No 133
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=5.3e-15 Score=122.46 Aligned_cols=82 Identities=22% Similarity=0.276 Sum_probs=68.2
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|+.|+. |+++.++.++ ..+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~---~~~~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~ 72 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETG-----------------SSKGFGFVDFNSEEDAKAAKE 72 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSE---EEEEECSSSC-----------------SEEEEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeE---EEEEecCCCC-----------------CcCcEEEEEECCHHHHHHHHH
Confidence 35789999999999999999999998864 4454443221 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
.||+..+.++.|+|.++..+..
T Consensus 73 ~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 73 AMEDGEIDGNKVTLDWAKPKGE 94 (102)
T ss_dssp HHTTCEETTEECEEEECCCCCS
T ss_pred HhCCCeECCeEEEEEEecCCCC
Confidence 9999999999999999876544
No 134
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=8.4e-15 Score=128.58 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=69.6
Q ss_pred cceEEEEcCCCCcccHHHHH----HHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~----e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAek 362 (451)
..++|||+||++++++++|+ ++|++||.|..|++.+. + ..||||||+|++.++|++
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~---~-----------------~~rG~aFV~F~~~~~A~~ 87 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS---D-----------------DNSGKAYIVFATQESAQA 87 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC---C-----------------SSCCCEEEEESSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC---C-----------------CcCCEEEEEECCHHHHHH
Confidence 46799999999999998876 79999999999988421 1 138999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeeccC
Q 013031 363 AIAELNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 363 Av~~Lng~~~~~~gLrV~l~~~r~ 386 (451)
|++.||+..+.++.|+|.++..+.
T Consensus 88 Ai~~lng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 88 FVEAFQGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp HHHHSTTCCCTTSCCEEEECCCCC
T ss_pred HHHHHCCCEeCCCEEEEEEccCcc
Confidence 999999999999999999987544
No 135
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.56 E-value=1.8e-14 Score=127.29 Aligned_cols=113 Identities=25% Similarity=0.282 Sum_probs=82.9
Q ss_pred CHHHHHHHhhcCcceEEeecccccccCCCCcchhhhcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCC
Q 013031 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (451)
Q Consensus 249 d~~~I~~ALr~S~~LeVsedg~kVRR~~Pl~e~~~~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~ 328 (451)
+.+....|++......+.....+|+...+-. .....++|||+|||.++++++|+++|++||.|..|++.++..+++
T Consensus 54 ~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~ 129 (168)
T 1b7f_A 54 SEMDSQRAIKVLNGITVRNKRLKVSYARPGG----ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGR 129 (168)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCCS----STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCC
T ss_pred CHHHHHHHHHhcCCCEeCCcEEEEEecCCCc----ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCC
Confidence 3445555665444444432222333333221 223568999999999999999999999999999999987643221
Q ss_pred CCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCC--CceEEEEe
Q 013031 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWR--SGLRVRLM 382 (451)
Q Consensus 329 ~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~--~gLrV~l~ 382 (451)
.+|||||+|++.++|++|++.||+..+.+ +.|+|+++
T Consensus 130 -----------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 130 -----------------PRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp -----------------EEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred -----------------cceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 38999999999999999999999999877 77888864
No 136
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=6e-15 Score=119.86 Aligned_cols=80 Identities=18% Similarity=0.153 Sum_probs=70.5
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|+.| .|..|+|+++. ++ ..+|||||+|++.++|++|++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~-~g-----------------~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNA-HG-----------------NKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECT-TS-----------------CEEEEEEEECSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECC-CC-----------------CCceEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999 99999998652 11 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 013031 366 ELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r 385 (451)
||+..+.++.|+|.++..+
T Consensus 69 -~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 69 -CNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp -SCSEEETTEEEEEEEESSC
T ss_pred -hCCceeCCcEEEEEECCcC
Confidence 9999999999999988654
No 137
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.56 E-value=3.8e-15 Score=142.60 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=72.4
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCC--ceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG--~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
..++|||+||++++|+++|+++|++|| +|+.|+|++++.+++ .||||||+|++.++|++||
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~-----------------skGfaFV~f~~~~~a~~Ai 129 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ-----------------SKGFALVGVGSEASSKKLM 129 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCC-----------------EEEEEEEEESCTTHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHH
Confidence 467999999999999999999999999 999999988764432 3899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeec
Q 013031 365 AELNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~ 384 (451)
+.||+..+.++.|+|+++..
T Consensus 130 ~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 130 DLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp TTSTTSCBTTBCCEEEECCH
T ss_pred HHcCCCeECCEEeEEEECCC
Confidence 99999999999999999854
No 138
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.56 E-value=2.6e-14 Score=125.67 Aligned_cols=113 Identities=19% Similarity=0.291 Sum_probs=82.3
Q ss_pred CHHHHHHHhhcCcceEEeecccccccCCCCcchhhhcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCC
Q 013031 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (451)
Q Consensus 249 d~~~I~~ALr~S~~LeVsedg~kVRR~~Pl~e~~~~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~ 328 (451)
+.+....||+......+.....+|....+-. .....++|||+|||.++++++|+++|+.||.|..|++..+..++.
T Consensus 53 ~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~ 128 (167)
T 1fxl_A 53 DPKDAEKAINTLNGLRLQTKTIKVSYARPSS----ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGV 128 (167)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCCC----GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC
T ss_pred CHHHHHHHHHHcCCCccCCceEEEEecCCCc----ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCC
Confidence 3455556665433344432222333333222 233568999999999999999999999999999999987643221
Q ss_pred CCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCc--eEEEEe
Q 013031 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSG--LRVRLM 382 (451)
Q Consensus 329 ~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~g--LrV~l~ 382 (451)
.+|||||+|++.++|++|++.||+..+.++. |+|+++
T Consensus 129 -----------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 129 -----------------SRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp -----------------EEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred -----------------ccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 3899999999999999999999999988865 666653
No 139
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.55 E-value=1.1e-14 Score=129.50 Aligned_cols=112 Identities=19% Similarity=0.240 Sum_probs=85.1
Q ss_pred CHHHHHHHhhcCcceEEeecccccccCCCCcchhhhcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCC
Q 013031 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (451)
Q Consensus 249 d~~~I~~ALr~S~~LeVsedg~kVRR~~Pl~e~~~~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~ 328 (451)
+.+....|| ......+.....+|++..... .....++|||+|||.++|+++|+++|++||.|..|++.+++.+++
T Consensus 60 ~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~----~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~ 134 (172)
T 2g4b_A 60 SVDETTQAM-AFDGIIFQGQSLKIRRPHDYQ----PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 134 (172)
T ss_dssp SHHHHHHHG-GGTTCEETTEECEEECCSSCC----CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCS
T ss_pred CHHHHHHHH-HhCCcEecCceeeecCCcccC----CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCC
Confidence 455666677 444455533333344332211 122468999999999999999999999999999999987643221
Q ss_pred CCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEe
Q 013031 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (451)
Q Consensus 329 ~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~l~ 382 (451)
.+|||||+|++.++|++|++.||+..+.++.|+|+++
T Consensus 135 -----------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 135 -----------------SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp -----------------EEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred -----------------cceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 3899999999999999999999999999999999876
No 140
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.55 E-value=2.9e-15 Score=117.13 Aligned_cols=75 Identities=13% Similarity=0.245 Sum_probs=65.4
Q ss_pred EEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 013031 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (451)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng 369 (451)
+|||+|||.++++++|+++|+.||.|..|++.+++.+++ ++|||||+|++.++|++|++. ++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~Ai~~-~~ 62 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNK-----------------RRGFCFITFKEEEPVKKIMEK-KY 62 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSS-----------------SCCCEEEECSSSHHHHHHHTT-SS
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC-----------------cCCEEEEEECCHHHHHHHHHh-CC
Confidence 589999999999999999999999999999876643221 389999999999999999995 88
Q ss_pred CCCCCCceEEEEe
Q 013031 370 EGNWRSGLRVRLM 382 (451)
Q Consensus 370 ~~~~~~gLrV~l~ 382 (451)
..+.++.|+|+++
T Consensus 63 ~~~~g~~l~v~~a 75 (75)
T 1iqt_A 63 HNVGLSKCEIKVA 75 (75)
T ss_dssp CCBTTBCCCEEEC
T ss_pred CeECCEEEEEEEC
Confidence 8888888988864
No 141
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.55 E-value=1.2e-14 Score=124.14 Aligned_cols=77 Identities=21% Similarity=0.201 Sum_probs=64.3
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||+++|+++|+++|++||+|..|+|+. .|||||+|++.++|++||+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~------------------------~g~afV~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR------------------------DGTGVVEFVRKEDMTYAVRK 70 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT------------------------TSEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec------------------------CCEEEEEECCHHHHHHHHHH
Confidence 357899999999999999999999999999999842 27999999999999999999
Q ss_pred HcCCCCCCCc-----eEEEEeeccCC
Q 013031 367 LNDEGNWRSG-----LRVRLMLRRGS 387 (451)
Q Consensus 367 Lng~~~~~~g-----LrV~l~~~r~~ 387 (451)
||+..+.++. |+|.....+..
T Consensus 71 l~g~~~~gr~~~~~~i~v~~~~~~~~ 96 (115)
T 3beg_B 71 LDNTKFRSHEGETAYIRVKVDGPRSP 96 (115)
T ss_dssp HTTCBCCCTTSCCCBCEEEECC----
T ss_pred hCCCEECCcEeeeEEEEeccCCCCCC
Confidence 9999998887 66666554433
No 142
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.55 E-value=2.8e-15 Score=128.85 Aligned_cols=81 Identities=20% Similarity=0.161 Sum_probs=71.3
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCc---eEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGS---VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~---V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAek 362 (451)
...++|||+|||+++|+++|+++|+.||. |..|+|++++. + ..+|||||+|++.++|++
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g-----------------~~~G~afV~F~~~~~a~~ 76 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-G-----------------RQSGEAFVELESEDDVKL 76 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-S-----------------CEEEEEEEEBSSHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-C-----------------CCCeEEEEEECCHHHHHH
Confidence 35689999999999999999999999999 89999987642 1 138999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeecc
Q 013031 363 AIAELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 363 Av~~Lng~~~~~~gLrV~l~~~r 385 (451)
|++ ||+..+.++.|+|.++..+
T Consensus 77 Al~-~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 77 ALK-KDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp HGG-GTTEEETTEEEEEEEECHH
T ss_pred HHh-cCCCeECCeEEEEEECCHH
Confidence 999 9999999999999887643
No 143
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.54 E-value=2.6e-15 Score=133.98 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=70.4
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||+++|+++|+++|+.|| |..|+|++++. ++ .||||||+|++.++|++||
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~-----------------srGfaFV~F~~~e~A~~Al- 103 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GR-----------------VTGEADVEFATHEEAVAAM- 103 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SC-----------------SSCCCEEECSHHHHHHHHT-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CC-----------------CceEEEEEeCCHHHHHHHH-
Confidence 3567999999999999999999999999 77999977642 21 3899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
++|+..+.++.|+|.+...+..
T Consensus 104 ~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 104 SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp TCCSCSSSSCCCCCEECCCSCC
T ss_pred hhCCCEECCEEEEEEECCCCCC
Confidence 7999999999999988876544
No 144
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2e-14 Score=117.62 Aligned_cols=78 Identities=19% Similarity=0.176 Sum_probs=69.3
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEE-EeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIR-TCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vr-i~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
..++|||+|||.++|+++|+++|+.||.|..|+ |..++. .|.|||+|++.++|++|++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---------------------~~~afV~f~~~~~a~~Ai~ 72 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---------------------TAVVNVTYSSKDQARQALD 72 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---------------------SEEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---------------------CCEEEEEECCHHHHHHHHH
Confidence 468999999999999999999999999999995 654421 3449999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 013031 366 ELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r 385 (451)
.||+..+.++.|+|.++..+
T Consensus 73 ~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 73 KLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHTTCBCSSCBCEEEECCCC
T ss_pred HhCCCEECCcEEEEEEcCcc
Confidence 99999999999999998765
No 145
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.1e-14 Score=118.33 Aligned_cols=76 Identities=25% Similarity=0.281 Sum_probs=67.5
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|| ++|+++|+++|++||.|..|+|.. .+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-----------------------~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----------------------PRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 4689999996 899999999999999999999841 288999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccCC
Q 013031 367 LNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~~ 387 (451)
||+..+.++.|+|.++..+..
T Consensus 69 l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 69 LNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp TTTEEETTEEEEEECCSSCCC
T ss_pred hCCCeECCeEEEEEECCCCCC
Confidence 999999888899998865443
No 146
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.54 E-value=4.5e-15 Score=125.00 Aligned_cols=81 Identities=19% Similarity=0.158 Sum_probs=71.2
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCc---eEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGS---VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~---V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAek 362 (451)
...++|||+|||+++|+++|+++|+.||. |..|+|++++. ++ .+|||||+|++.++|++
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~-----------------~~G~afV~F~~~~~a~~ 70 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GK-----------------RRGDALIEMESEQDVQK 70 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-ST-----------------TCSEEEEEBSSHHHHHH
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CC-----------------EeeEEEEEECCHHHHHH
Confidence 35789999999999999999999999998 89999976643 21 38999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeecc
Q 013031 363 AIAELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 363 Av~~Lng~~~~~~gLrV~l~~~r 385 (451)
|++ ||+..+.++.|+|..+..+
T Consensus 71 Al~-~~~~~~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 71 ALE-KHRMYMGQRYVEVYEINNE 92 (107)
T ss_dssp HHT-TTTCCSSSSCCCCEECCHH
T ss_pred HHH-hCcceeCCeEEEEEECCHH
Confidence 999 9999999999999987653
No 147
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.53 E-value=8.5e-15 Score=119.94 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=70.7
Q ss_pred ccceEEEEcCCCCcccHHHHH----HHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~----e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAe 361 (451)
...++|||+|||.++++++|+ ++|+.||.|..|++.+. + ..+|||||+|++.++|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~-------------~-------~~~g~afV~f~~~~~A~ 65 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-------------L-------KMRGQAFVIFKEVSSAT 65 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-------------H-------HHTTCEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC-------------C-------CcCcEEEEEeCCHHHHH
Confidence 356899999999999999999 99999999999998521 1 12789999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeeccC
Q 013031 362 KAIAELNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 362 kAv~~Lng~~~~~~gLrV~l~~~r~ 386 (451)
+|++.||+..+.++.|+|.++..+.
T Consensus 66 ~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 66 NALRSMQGFPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp HHHHHHTTCEETTEECEEEECSSCC
T ss_pred HHHHHhCCCEECCcEEEEEEccCCC
Confidence 9999999999999999999886543
No 148
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.53 E-value=5.3e-15 Score=131.39 Aligned_cols=79 Identities=18% Similarity=0.147 Sum_probs=70.6
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCc---eEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS---VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~---V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekA 363 (451)
..++|||+|||+++|+++|+++|+.||. |+.|+|++++. ++ .||||||+|++.++|++|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~-----------------srG~aFV~F~~~e~a~~A 104 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GR-----------------QSGEAFVELGSEDDVKMA 104 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SC-----------------EEEEEEEECSSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CC-----------------CCeEEEEEECCHHHHHHH
Confidence 5689999999999999999999999999 89999987653 21 389999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeec
Q 013031 364 IAELNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 364 v~~Lng~~~~~~gLrV~l~~~ 384 (451)
++ ||+..+.++.|+|..+..
T Consensus 105 l~-~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 105 LK-KDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp HT-TTEEESSSSEEEEEECCH
T ss_pred Hh-cCCCEECCEEEEEEECCh
Confidence 99 999999999999988754
No 149
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.53 E-value=6.3e-14 Score=146.25 Aligned_cols=84 Identities=19% Similarity=0.205 Sum_probs=74.8
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+||+.++|+++|+++|+.||.|+.|.|+.+..+++ .+|||||+|++.++|++||+.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-----------------~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGK-----------------PRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCC-----------------ccceEEEeeccHHHHHHHHHH
Confidence 467999999999999999999999999999999987654322 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccCC
Q 013031 367 LNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~~ 387 (451)
||+..+.+..|+|.++..+..
T Consensus 164 lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 164 ADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred cCCCEECCEEEEEEEeCCCCC
Confidence 999999999999999976543
No 150
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=6.3e-15 Score=120.70 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=68.1
Q ss_pred cccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 285 e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
....++|||+|||.++++++|+++|+.||.|..| . .. + ..+|||||+|++.++|++|+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~-~~-------------~-------~~~g~afV~f~~~~~a~~A~ 70 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-S-QD-------------G-------KSKGIAYIEFKSEADAEKNL 70 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-E-ET-------------T-------EEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-C-CC-------------C-------CcceEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999998777 1 11 0 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeccC
Q 013031 365 AELNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~r~ 386 (451)
+.||+..+.++.|+|.++..+.
T Consensus 71 ~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 71 EEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp HHTTEEEETTEEEEEEECSSSC
T ss_pred HHhCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999886543
No 151
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.53 E-value=2e-14 Score=134.37 Aligned_cols=81 Identities=21% Similarity=0.242 Sum_probs=71.6
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..+||||+|||.++|+++|+++|++||+|++|+|++++.+++ ++|||||+|++.++|++|++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-----------------~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRR-----------------SLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCC-----------------ccccccceeCCHHHHHHHHHH
Confidence 457999999999999999999999999999999988754332 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeec
Q 013031 367 LNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~ 384 (451)
||+..+.++.|+|.....
T Consensus 77 ~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 77 MNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp HTTCEETTEECEEEECCC
T ss_pred hhhhhcCCcccccccccc
Confidence 999998888888887653
No 152
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.53 E-value=1.7e-14 Score=115.72 Aligned_cols=70 Identities=24% Similarity=0.370 Sum_probs=64.4
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcC----C-------ceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeC
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAV----G-------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~f----G-------~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFe 355 (451)
..++|||+|||.++++++|+++|+.| | .|..|++.++ ||||||+|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----------------------kg~afV~f~ 61 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----------------------KNFAFLEFR 61 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----------------------SSEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----------------------CcEEEEEcC
Confidence 57899999999999999999999999 8 9999998532 789999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEE
Q 013031 356 SVELAEKAIAELNDEGNWRSGLRVR 380 (451)
Q Consensus 356 t~EdAekAv~~Lng~~~~~~gLrV~ 380 (451)
+.++|++|+ .||+..+.++.|+|+
T Consensus 62 ~~~~a~~A~-~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 62 SVDETTQAM-AFDGIIFQGQSLKIR 85 (87)
T ss_dssp SHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CHHHHHHHH-hcCCCEECCeEEEEe
Confidence 999999999 999999999888886
No 153
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.7e-15 Score=128.54 Aligned_cols=81 Identities=14% Similarity=0.146 Sum_probs=68.8
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||+++|+++|+++|+.||.|..+.++.+..++ ..+|||||+|++.++|++||+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g-----------------~~~G~afV~F~~~~~a~~Al~- 85 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNG-----------------KATGEGFVEFRNEADYKAALC- 85 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTS-----------------SEEEEEEEEBSSSHHHHHHHT-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCC-----------------CCCeEEEEEECCHHHHHHHHH-
Confidence 56899999999999999999999999999874444332221 138999999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 013031 367 LNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r 385 (451)
||+..+.++.|+|.++..+
T Consensus 86 ~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 86 RHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp SCSBCSTTSCBEEEEECHH
T ss_pred hCCCeECCcEEEEEECCHH
Confidence 9999999999999988653
No 154
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.52 E-value=3.1e-14 Score=129.34 Aligned_cols=85 Identities=20% Similarity=0.234 Sum_probs=74.5
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|++||.|..|++.+++.++. .+|||||+|++.++|++|++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL-----------------SKGYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCS-----------------EEEEEEEEESSSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCC-----------------cceEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999987643221 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
.||+..+.++.|+|+++..+..
T Consensus 175 ~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 175 GLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp HHTTCEETTEECEEEESCCCCC
T ss_pred HcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999998875443
No 155
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.52 E-value=1.9e-14 Score=127.33 Aligned_cols=81 Identities=14% Similarity=0.214 Sum_probs=71.8
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++++++|+++|+.||.|..|++..++.++. ++|||||+|++.++|++|++
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~- 147 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQ-----------------SRGFGFVTYDSADAVDRVCQ- 147 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSST-----------------TSEEEEEEESSHHHHHHHHH-
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCc-----------------cceEEEEEECCHHHHHHHHh-
Confidence 467999999999999999999999999999999987643222 38999999999999999998
Q ss_pred HcCCCCCCCceEEEEeecc
Q 013031 367 LNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r 385 (451)
+++..+.++.|+|.++..|
T Consensus 148 ~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 148 NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CSEECSSSSCEEEEECCCC
T ss_pred CCCEEeCCeEEEEeecCCC
Confidence 8999999999999988654
No 156
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=124.18 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=68.2
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||+++|+++|+++|+.| .|..|+|++++. ++ .+|||||+|++.++|++|+ .
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~-----------------~~G~afV~F~~~~~a~~Al-~ 74 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GR-----------------NNGNGLVKFLSPQDTFEAL-K 74 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CC-----------------CCSEEEEECSSHHHHHHHH-H
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CC-----------------CCeEEEEEECCHHHHHHHH-h
Confidence 35799999999999999999999999 899999987642 21 3899999999999999999 6
Q ss_pred HcCCCCCCCceEEEEeec
Q 013031 367 LNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~ 384 (451)
||+..+.++.|+|..+..
T Consensus 75 ~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 75 RNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp TTTEEETTEEEEEEECCH
T ss_pred cCCCeECCeEEEEEECCc
Confidence 999999888898877754
No 157
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.3e-14 Score=117.40 Aligned_cols=79 Identities=22% Similarity=0.233 Sum_probs=66.3
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++|+++|+++|+.||.|..| +. ++.+ .+ ||||+|++.++|++|++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~-~~~~-------------------g~-~afV~f~~~~~a~~ai~- 63 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VM-DKDK-------------------GV-FAIVEMGDVGAREAVLS- 63 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EE-CSSS-------------------CC-EEEEEESSHHHHHHHHT-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EE-cCCC-------------------Cc-EEEEEECCHHHHHHHHh-
Confidence 46799999999999999999999999999998 32 2210 13 99999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccCCC
Q 013031 367 LNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~~k 388 (451)
||+..+.++.|+|+.+..+..+
T Consensus 64 l~g~~~~g~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 64 QSQHSLGGHRLRVRPREQKEFQ 85 (94)
T ss_dssp CSCCEETTEECCCBCSCCSCCC
T ss_pred cCCeEECCEEEEEEECCcCCCC
Confidence 9999999999999876554433
No 158
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.52 E-value=3.5e-14 Score=124.82 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=71.4
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
.++|||+|||.++++++|+++|+.||.|..|++++++.+++ .+|||||+|.+.++|++|++.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~-----------------~~g~afV~f~~~~~A~~a~~~l 64 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-----------------SLGYGFVNYIDPKDAEKAINTL 64 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHHH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCc-----------------ceeEEEEEECCHHHHHHHHHHc
Confidence 57999999999999999999999999999999987653222 3899999999999999999999
Q ss_pred cCCCCCCCceEEEEeec
Q 013031 368 NDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 368 ng~~~~~~gLrV~l~~~ 384 (451)
|+..+.++.|+|.+...
T Consensus 65 ~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 65 NGLRLQTKTIKVSYARP 81 (167)
T ss_dssp TTCEETTEECEEEECCC
T ss_pred CCCccCCceEEEEecCC
Confidence 99999998999988754
No 159
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.51 E-value=1.2e-14 Score=120.55 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=70.2
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++++++|+++|+.||.|..|+|..++ +++ .+|||||+|++.++|++|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~-----------------~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGV-----------------SKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSC-----------------EEEEEEEEESSCCCHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCC-----------------ccceEEEEECCHHHHHHHHh
Confidence 457899999999999999999999999999999998764 221 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccCC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
++..+.++.|+|..+..+..
T Consensus 69 --~~~~~~g~~l~v~~a~~~~~ 88 (102)
T 2xs2_A 69 --SQINFHGKKLKLGPAIRKQN 88 (102)
T ss_dssp --CCCEETTEECEEEEEEECC-
T ss_pred --CCCeECCEEEEEEECCcCcc
Confidence 77777788899888875443
No 160
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.51 E-value=2.6e-14 Score=137.97 Aligned_cols=75 Identities=21% Similarity=0.259 Sum_probs=68.3
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+||+.++++++|+++|++||.|+.|+|..++ +|||||+|++.++|++|++.
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----------------------~g~afV~f~~~~~A~~A~~~ 263 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----------------------HDIAFVEFDNEVQAGAARDA 263 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----------------------CcEEEEEeCCHHHHHHHHHH
Confidence 45789999999999999999999999999999996331 68999999999999999999
Q ss_pred HcCCCCC-CCceEEEEee
Q 013031 367 LNDEGNW-RSGLRVRLML 383 (451)
Q Consensus 367 Lng~~~~-~~gLrV~l~~ 383 (451)
||+..++ ++.|+|.++.
T Consensus 264 l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 264 LQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCCcEeCCCCEEEEEEec
Confidence 9999998 8889998874
No 161
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.51 E-value=6.1e-14 Score=128.74 Aligned_cols=77 Identities=25% Similarity=0.293 Sum_probs=67.5
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
-.+|||+||++++|+++|+++|++||+|+.|+|...+ .+|||||||++.++|++|++.|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---------------------~rgfAFVeF~d~~~A~~Ai~~L 104 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---------------------NQFQALLQYADPVSAQHAKLSL 104 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---------------------SCEEEEEEESCHHHHHHHHHHS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---------------------CCCEEEEEECCHHHHHHHHHHh
Confidence 4579999999999999999999999999999985221 2789999999999999999999
Q ss_pred cCCCCCC--CceEEEEeecc
Q 013031 368 NDEGNWR--SGLRVRLMLRR 385 (451)
Q Consensus 368 ng~~~~~--~gLrV~l~~~r 385 (451)
||..+++ +.|+|.++..+
T Consensus 105 nG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 105 DGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp TTBCSSSSCSCEEEEECSSS
T ss_pred CCCEecCCCcEEEEEEecCC
Confidence 9999976 77898887644
No 162
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.50 E-value=4.6e-14 Score=130.00 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=72.5
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+||+.++++++|+++|+.||.|+.|+|..+. ++. .+|||||+|++.++|++|++.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~-----------------~kG~afV~F~~~~~A~~Ai~~ 148 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGR-----------------SLGTADVHFERRADALKAMKQ 148 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSS-----------------CSCCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCC-----------------EeeEEEEEeCCHHHHHHHHHH
Confidence 36899999999999999999999999999999997664 211 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 013031 367 LNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r 385 (451)
||+..+.++.|+|.++...
T Consensus 149 lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 149 YKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp STTCBCSSSBCEEEEESSG
T ss_pred hCCCEECCEEEEEEEecCC
Confidence 9999999999999998653
No 163
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.9e-14 Score=124.61 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=65.3
Q ss_pred cceEEEE--cCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 287 QSRIVVA--ENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 287 ~~RTVyV--~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
..++||| +||++++++++|+++|++||.|..|.|.. .||||||+|++.++|++|+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----------------------~rgfaFV~f~~~~~A~~Ai 80 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKRAY 80 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----------------------TCSCEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHHHH
Confidence 4678999 67999999999999999999999998742 1789999999999999999
Q ss_pred HHHcCCCC-----CCCceEEEEeecc
Q 013031 365 AELNDEGN-----WRSGLRVRLMLRR 385 (451)
Q Consensus 365 ~~Lng~~~-----~~~gLrV~l~~~r 385 (451)
++||+..+ .++.|.|.++...
T Consensus 81 ~~lnG~~~~~~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 81 VTLNGKEVVDDLGQKITLYLNFVEKV 106 (114)
T ss_dssp HHTTTCEEECTTSCEEECEEEEESCC
T ss_pred HHhCCCEEccccCCCcEEEEEecccC
Confidence 99999866 3455888887644
No 164
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.49 E-value=4.9e-14 Score=124.46 Aligned_cols=81 Identities=25% Similarity=0.321 Sum_probs=71.2
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++++++|+++|+.||.|..|++++++.+++ .+|||||+|++.++|++|++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~a~~~ 64 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGY-----------------SYGYAFVDFTSEMDSQRAIKV 64 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTE-----------------ECSEEEEEESSHHHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCc-----------------cceEEEEEECCHHHHHHHHHh
Confidence 358999999999999999999999999999999976543221 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeec
Q 013031 367 LNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~ 384 (451)
|++..+.++.|+|.+...
T Consensus 65 l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 65 LNGITVRNKRLKVSYARP 82 (168)
T ss_dssp HTTCEETTEECEEEECCC
T ss_pred cCCCEeCCcEEEEEecCC
Confidence 999999888899988754
No 165
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.49 E-value=2.6e-14 Score=115.88 Aligned_cols=75 Identities=25% Similarity=0.244 Sum_probs=67.8
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++++++|+++|++| .|..|++. + .+|||||+|++.++|++|++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~---------------------~~g~afV~f~~~~~a~~Ai~~ 59 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--R---------------------NKRTAFVTLLNGEQAQNAIQM 59 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--G---------------------GGTEEEECCSCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--C---------------------CCcEEEEEECCHHHHHHHHHH
Confidence 46799999999999999999999999 99999883 1 289999999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 013031 367 LNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r 385 (451)
||+..+.++.|+|.++...
T Consensus 60 l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 60 FHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp HTTEEETTEEEEEEECCCC
T ss_pred hCCCeECCcEEEEEEcCCC
Confidence 9999999999999987543
No 166
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.49 E-value=2.7e-14 Score=125.68 Aligned_cols=82 Identities=20% Similarity=0.137 Sum_probs=69.1
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEE--------EEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTI--------RTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~V--------ri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~E 358 (451)
..++|||+|||.++|+++|+++|+.||.|..+ ++... ...+|||||+|.+.+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~--------------------g~~~g~afV~f~~~~ 103 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKE--------------------GRMKGQAFIGLPNEK 103 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEE--------------------TTTEEEEEEECSSHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccC--------------------CCcccEEEEEeCCHH
Confidence 46799999999999999999999999998763 33211 123899999999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEeeccCCC
Q 013031 359 LAEKAIAELNDEGNWRSGLRVRLMLRRGSK 388 (451)
Q Consensus 359 dAekAv~~Lng~~~~~~gLrV~l~~~r~~k 388 (451)
+|++|++.||+..+.++.|+|.++..+..+
T Consensus 104 ~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 104 AAAKALKEANGYVLFGKPMVVQFARSARPK 133 (143)
T ss_dssp HHHHHHHHHTTBEETTEECEEEECCCSCC-
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCCCCCc
Confidence 999999999999999999999998765444
No 167
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=6e-14 Score=123.17 Aligned_cols=78 Identities=22% Similarity=0.300 Sum_probs=70.0
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Ln 368 (451)
|+|||+|||.++|+++|+++|+.||.|.+|++++++. + ..+|||||+|.+.++|++|++.||
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~-----------------~~~g~afV~f~~~~~a~~A~~~l~ 62 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-N-----------------KNVNYAFVEYHQSHDANIALQTLN 62 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-------------------CCEEEEEEEESSHHHHHHHHHHHT
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-C-----------------CCCCEEEEEeCCHHHHHHHHHHcC
Confidence 7999999999999999999999999999999986642 1 138999999999999999999999
Q ss_pred CCCCCCCceEEEEeec
Q 013031 369 DEGNWRSGLRVRLMLR 384 (451)
Q Consensus 369 g~~~~~~gLrV~l~~~ 384 (451)
+..+.++.|+|.++..
T Consensus 63 ~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 63 GKQIENNIVKINWAFQ 78 (166)
T ss_dssp TCEETTEECEEEECCC
T ss_pred CCccCCCeeEEEEcCC
Confidence 9999998999988754
No 168
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.49 E-value=5.7e-14 Score=131.94 Aligned_cols=77 Identities=17% Similarity=0.234 Sum_probs=70.1
Q ss_pred cceEEEEcCCC-CcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 287 QSRIVVAENLP-EDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 287 ~~RTVyV~nLP-~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
..++|||+||+ +++|+++|+++|+.||.|.+|+|++++ +|||||+|++.++|++|++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~----------------------~g~afV~f~~~~~A~~Ai~ 60 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK----------------------PGAAMVEMADGYAVDRAIT 60 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS----------------------TTCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC----------------------CCEEEEEECCHHHHHHHHH
Confidence 46799999999 899999999999999999999996431 7899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 013031 366 ELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r 385 (451)
.||+..+.++.|+|.++...
T Consensus 61 ~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 61 HLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp HHTTCEETTEECEEEECSCS
T ss_pred HhCCCEECCceEEEEEccCC
Confidence 99999999999999987543
No 169
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.48 E-value=8.4e-14 Score=124.48 Aligned_cols=112 Identities=19% Similarity=0.222 Sum_probs=81.2
Q ss_pred CHHHHHHHhhcCcceEEeecccccccCCCCcchhhhcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCC
Q 013031 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (451)
Q Consensus 249 d~~~I~~ALr~S~~LeVsedg~kVRR~~Pl~e~~~~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~ 328 (451)
+.+.+.+||+ .....+.....+|.+..+.. .......++|||+|||.++|+++|+++|+.||.|..+ . .++
T Consensus 63 ~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~--~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~-~~~- 133 (175)
T 1fje_B 63 SAEDLEKALE-LTGLKVFGNEIKLEKPKGRD--SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----S-QDG- 133 (175)
T ss_dssp SHHHHHHHHH-GGGEEETTEEEEEECCCCSS--CSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----C-SSS-
T ss_pred CHHHHHHHHh-cCCCEeCCeEEEEecCCCcc--ccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----c-CCC-
Confidence 3455556663 44444542222333333221 2233457899999999999999999999999998777 1 111
Q ss_pred CCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeecc
Q 013031 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 329 ~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~l~~~r 385 (451)
..+|||||+|++.++|++|++.||+..+.++.|+|+++..|
T Consensus 134 ----------------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 134 ----------------KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp ----------------SCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ----------------CCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 13899999999999999999999999999999999988654
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.48 E-value=9.8e-14 Score=127.66 Aligned_cols=81 Identities=21% Similarity=0.201 Sum_probs=69.8
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++|+++|+++|+.||.|..|+|++++.+++ .+|||||+|++.++|++|++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~A~~ 88 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMK-----------------HKGFAFVEYEVPEAAQLALE 88 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-C-----------------CCSEEEEEESSHHHHHHHHH
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCc-----------------cCceEEEEeCCHHHHHHHHH
Confidence 3578999999999999999999999999999999987643222 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 013031 366 ELNDEGNWRSGLRVRLML 383 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~ 383 (451)
.||+..+.++.|+|....
T Consensus 89 ~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 89 QMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHSSCCCC-CCCEEECCS
T ss_pred HccCCeeCCeeEEEecCC
Confidence 999999999999997654
No 171
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.48 E-value=1e-13 Score=120.09 Aligned_cols=91 Identities=23% Similarity=0.283 Sum_probs=69.3
Q ss_pred ccccCCCCcchhhhcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEE
Q 013031 271 KIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHA 350 (451)
Q Consensus 271 kVRR~~Pl~e~~~~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~A 350 (451)
..+|..+..+.. .....++|||+|| ++|+++|+++|+.||.|..|+|.. .||||
T Consensus 23 ~~~r~~~~~~~~-~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~-----------------------~kg~a 76 (121)
T 2bz2_A 23 PFRRSDSFPERR-APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----------------------PRNCA 76 (121)
T ss_dssp -------------CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET-----------------------TTTEE
T ss_pred CCCCCCCCCCCC-CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC-----------------------CCCEE
Confidence 344544444322 2345789999996 799999999999999999999841 28899
Q ss_pred EEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeeccCC
Q 013031 351 FVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 351 FVEFet~EdAekAv~~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
||+|++.++|++|++.||+..+.++.|+|.++..+..
T Consensus 77 FV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 77 FVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp EEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred EEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 9999999999999999999999999999999876543
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.47 E-value=1.6e-13 Score=121.71 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=67.1
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
+.|+|||+|||.++|+++|+++|++||.|..|+|++++.++. ...+|||||+|.+.++|++|++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~---------------~~~~g~afV~f~~~~~A~~A~~~ 66 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNP---------------PQSKGCCFVTFYTRKAALEAQNA 66 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSS---------------CEEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCC---------------CCcceEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987653220 01389999999999999999999
Q ss_pred HcCCCCC---CCceEEEEee
Q 013031 367 LNDEGNW---RSGLRVRLML 383 (451)
Q Consensus 367 Lng~~~~---~~gLrV~l~~ 383 (451)
||+..+. .+.+++....
T Consensus 67 l~~~~~~~~~~~~~~~~~~~ 86 (175)
T 3nmr_A 67 LHNMKVLPGMHHPIQMKPAD 86 (175)
T ss_dssp HTTTCCCTTCSSCCEEEECG
T ss_pred hcCcEEccCCccceEEcccc
Confidence 9997765 3345555443
No 173
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.46 E-value=1.1e-13 Score=122.46 Aligned_cols=74 Identities=26% Similarity=0.282 Sum_probs=64.9
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccE-EEEEeCCHHHHHHHHHHH
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLH-AFVEYESVELAEKAIAEL 367 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~-AFVEFet~EdAekAv~~L 367 (451)
-.|||+||++.+|+++|+++|++||.|.+|+|... .+|| |||||++.++|++|++.|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----------------------~~gfqAFVef~~~~~A~~Ai~~L 86 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----------------------NNQFQALLQYADPVSAQHAKLSL 86 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----------------------TTEEEEEEEESCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----------------------CCCcEEEEEECCHHHHHHHHHHc
Confidence 47899999999999999999999999999988531 1567 999999999999999999
Q ss_pred cCCCCCC--CceEEEEeec
Q 013031 368 NDEGNWR--SGLRVRLMLR 384 (451)
Q Consensus 368 ng~~~~~--~gLrV~l~~~ 384 (451)
||..+.+ +.|+|.++..
T Consensus 87 nG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 87 DGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp TTCEEETTEEEEEEEECSC
T ss_pred CCCeecCCCcEEEEEecCC
Confidence 9999988 5677777753
No 174
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.46 E-value=1.3e-13 Score=112.92 Aligned_cols=72 Identities=22% Similarity=0.281 Sum_probs=57.6
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
....+|||+|||+++|+++|+++|++||.|..|+|.++ .||||||+|++.++|++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----------------------srGfaFV~F~~~~~A~~--- 63 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----------------------FRAFAFVTFADDKVAQS--- 63 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----------------------CCSEEEEEESCHHHHHH---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----------------------CCCEEEEEECCHHHHHH---
Confidence 35679999999999999999999999999999998642 28999999999999983
Q ss_pred HHcCCCCCCCceEEEEee
Q 013031 366 ELNDEGNWRSGLRVRLML 383 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~ 383 (451)
|++..+..+|.+|++..
T Consensus 64 -~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 64 -LCGEDLIIKGISVHISN 80 (89)
T ss_dssp -HTTCEEEETTEEEEEEE
T ss_pred -HcCCCcccCCEEEEEEE
Confidence 66666554555544443
No 175
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.46 E-value=5.6e-14 Score=123.46 Aligned_cols=78 Identities=24% Similarity=0.286 Sum_probs=66.6
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceE--EEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVK--TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~--~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
..++|||+|||+++|+++|+++|+.| .|. .|+|++++. ++ .||||||+|++.++|++||
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-Gr-----------------srGfaFV~F~~~e~A~~Al 101 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GK-----------------ITGEAFVQFASQELAEKAL 101 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SS-----------------SCSEEEEEESSTTHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CC-----------------CceEEEEEECCHHHHHHHH
Confidence 46799999999999999999999999 576 899877643 21 3899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeec
Q 013031 365 AELNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~ 384 (451)
+. ++..+.++.|+|..+..
T Consensus 102 ~~-~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 102 GK-HKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp TT-TTCCBTTBCCCCEEECH
T ss_pred HH-CCCEECCEEEEEEECCH
Confidence 95 66888888899987754
No 176
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.46 E-value=1.2e-13 Score=125.33 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=70.7
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++|+++|+++|+.||.|..|+|++++.+++ .+|||||+|.+.++|++|++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~A~~ 73 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKR-----------------SRGFGFVTYATVEEVDAAMN 73 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCC-----------------ccceEEEEeCCHHHHHHHHh
Confidence 4678999999999999999999999999999999987653322 38999999999999999998
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 013031 366 ELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r 385 (451)
. ++..+.++.|+|.+...+
T Consensus 74 ~-~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 74 A-RPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp T-CSCEETTEECEEEECCC-
T ss_pred c-CCCEECCEEeeeecccCc
Confidence 5 888888888999887643
No 177
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.1e-13 Score=111.75 Aligned_cols=71 Identities=23% Similarity=0.252 Sum_probs=57.0
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++++++|+++|++||.|..|+|.++ .||||||+|++.++|++|
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~~--- 58 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----------------------FRAFAFVTFADDQIAQSL--- 58 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----------------------CCSCCEEECSCHHHHHHT---
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----------------------CCCEEEEEECCHHHHHHH---
Confidence 4689999999999999999999999999999998532 288999999999999754
Q ss_pred HcCCCCCCCceEEEEee
Q 013031 367 LNDEGNWRSGLRVRLML 383 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~ 383 (451)
++..+...+++|++..
T Consensus 59 -~~~~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 59 -CGEDLIIKGISVHISN 74 (88)
T ss_dssp -TTCEEEETTEEEEEEC
T ss_pred -hcCCceeCCEEEEEEe
Confidence 4444434455555443
No 178
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=2e-13 Score=119.70 Aligned_cols=74 Identities=26% Similarity=0.244 Sum_probs=63.9
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccE-EEEEeCCHHHHHHHHHHH
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLH-AFVEYESVELAEKAIAEL 367 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~-AFVEFet~EdAekAv~~L 367 (451)
..|||+||++.+|+++|+++|++||.|+.|+|.. + .|| |||||++.++|++|++.|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~----------------------~Gf~aFVef~~~~~A~~A~~~L 82 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R----------------------NGIQAMVEFESVLCAQKAKAAL 82 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S----------------------SSEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C----------------------CCCEEEEEECCHHHHHHHHHHh
Confidence 3578999999999999999999999999999842 1 365 999999999999999999
Q ss_pred cCCCCCCC--ceEEEEeecc
Q 013031 368 NDEGNWRS--GLRVRLMLRR 385 (451)
Q Consensus 368 ng~~~~~~--gLrV~l~~~r 385 (451)
||..+.++ .|+|.++..+
T Consensus 83 nG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 83 NGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp TTCCCBTTBSEEEEECCSCS
T ss_pred CCCEecCCCeEEEEEEecCC
Confidence 99999874 6888776543
No 179
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=8.4e-14 Score=118.46 Aligned_cols=67 Identities=21% Similarity=0.211 Sum_probs=55.8
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++|+++|+++|++||.|. ++++.++.+.. ....||||||+|++.++|++|++.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~--------------~g~~~G~aFV~f~~~~~a~~Ai~~ 71 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKS--------------YFPPKGYAFLLFQEESSVQALIDA 71 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCC--------------CSCTTSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCC--------------CCCcccEEEEEECCHHHHHHHHHh
Confidence 468999999999999999999999999999 77765543210 012389999999999999999999
Q ss_pred Hc
Q 013031 367 LN 368 (451)
Q Consensus 367 Ln 368 (451)
|+
T Consensus 72 ~~ 73 (114)
T 2dnl_A 72 CL 73 (114)
T ss_dssp SE
T ss_pred hh
Confidence 85
No 180
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.45 E-value=5.2e-13 Score=122.05 Aligned_cols=75 Identities=25% Similarity=0.325 Sum_probs=68.5
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCC-ceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
.++|||+||+.++++++|+++|+.|| .|..|++... .+|+|||+|++.++|++|++.
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----------------------~~g~afV~f~~~~~A~~A~~~ 177 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----------------------DRKMALIQMGSVEEAVQALID 177 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----------------------TSSCEEEECSSHHHHHHHHHH
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----------------------CCcEEEEEeCCHHHHHHHHHH
Confidence 68999999999999999999999999 9999998532 178999999999999999999
Q ss_pred HcCCCCC-CCceEEEEeec
Q 013031 367 LNDEGNW-RSGLRVRLMLR 384 (451)
Q Consensus 367 Lng~~~~-~~gLrV~l~~~ 384 (451)
||+..+. ++.|+|.++..
T Consensus 178 l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 178 LHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp HTSSCCSSCCSCCEEEECC
T ss_pred hcCCccCCCCeEEEEeecc
Confidence 9999998 88899998764
No 181
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=4e-14 Score=123.67 Aligned_cols=79 Identities=16% Similarity=0.150 Sum_probs=67.0
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCce----EEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSV----KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V----~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAek 362 (451)
..++|||+|||+++|+++|+++|+.||.| ..|+|+++. +++ .+|||||+|++.++|++
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr-----------------~~G~aFV~F~~~~~A~~ 83 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGR-----------------PTGDAFVLFACEEYAQN 83 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSC-----------------EEEEEEECCSSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCC-----------------EeeEEEEEECCHHHHHH
Confidence 46799999999999999999999999975 689987653 221 38999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeec
Q 013031 363 AIAELNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 363 Av~~Lng~~~~~~gLrV~l~~~ 384 (451)
||+. |+..+.++-|+|..+..
T Consensus 84 Al~~-~~~~l~gR~i~V~~a~~ 104 (123)
T 2dha_A 84 ALRK-HKDLLGKRYIELFRSTA 104 (123)
T ss_dssp HHTT-TTEESSSCEECCEEECH
T ss_pred HHHh-CCCeeCCeEEEEEECCH
Confidence 9996 88888888888877653
No 182
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.43 E-value=2.7e-13 Score=131.41 Aligned_cols=79 Identities=18% Similarity=0.215 Sum_probs=69.2
Q ss_pred cccceEEEEcCCCCcc---------cHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeC
Q 013031 285 ELQSRIVVAENLPEDH---------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (451)
Q Consensus 285 e~~~RTVyV~nLP~d~---------t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFe 355 (451)
....+||||+||+.++ ++++|+++|++||+|+.|+|+.. ||||||+|+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----------------------kG~AFV~F~ 187 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----------------------KNCGFVKFK 187 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----------------------GTEEEEEES
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----------------------CCEEEEEeC
Confidence 3457899999999998 79999999999999999999632 899999999
Q ss_pred CHHHHHHHHHHHcCCCC------------CCCceEEEEeeccC
Q 013031 356 SVELAEKAIAELNDEGN------------WRSGLRVRLMLRRG 386 (451)
Q Consensus 356 t~EdAekAv~~Lng~~~------------~~~gLrV~l~~~r~ 386 (451)
+.++|++|++.|++..+ .++.|+|+++....
T Consensus 188 ~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 188 YQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp SHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred CHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 99999999999999998 67889999987543
No 183
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3e-13 Score=113.66 Aligned_cols=71 Identities=18% Similarity=0.305 Sum_probs=63.3
Q ss_pred EEEEcCCCCcccHHH----HHHHHhcC-CceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 290 IVVAENLPEDHCHQN----LMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 290 TVyV~nLP~d~t~e~----L~e~Fs~f-G~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
+|||+|||+++++++ |+++|+.| |+|..|. .|+|||+|++.|+|++|+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------------------------gG~AfV~F~~~esA~~A~ 63 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------------------------GCSAILRFINQDSAERAQ 63 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------------------------TTCEEEEESSHHHHHHHH
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------------------------cCEEEEEECCHHHHHHHH
Confidence 499999999999887 55899999 5999882 378999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeccCC
Q 013031 365 AELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
+.||+..+.++.|+|.++..+..
T Consensus 64 ~~l~G~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 64 KRMENEDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp HHHTTCCSSSSCCEEESSCCSCC
T ss_pred HHhcCCccCCceEEEEecCCCcc
Confidence 99999999999999999876543
No 184
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.42 E-value=5.5e-13 Score=113.13 Aligned_cols=83 Identities=17% Similarity=0.154 Sum_probs=69.1
Q ss_pred ccceEEEEcCCCC-----cccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHH
Q 013031 286 LQSRIVVAENLPE-----DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (451)
Q Consensus 286 ~~~RTVyV~nLP~-----d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdA 360 (451)
..+++|+++|+-. +.++++|+++|++||+|..|+|.+++.++. ..+|||||+|++.++|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~----------------~~~G~~FV~f~~~~~A 69 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPD----------------DEAVRIFLEFERVESA 69 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCT----------------TTSEEEEEEESSHHHH
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCC----------------CCcEEEEEEECCHHHH
Confidence 3578999999952 336899999999999999999987642211 1289999999999999
Q ss_pred HHHHHHHcCCCCCCCceEEEEeec
Q 013031 361 EKAIAELNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 361 ekAv~~Lng~~~~~~gLrV~l~~~ 384 (451)
++|++.|||..+.++.|+|.++..
T Consensus 70 ~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 70 IKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp HHHHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHHHCCCEECCcEEEEEEcCH
Confidence 999999999999999999999864
No 185
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.42 E-value=3.9e-13 Score=122.92 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=70.4
Q ss_pred cceEEEEcCCCC-cccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 287 ~~RTVyV~nLP~-d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
..++|||+|||. ++++++|+++|+.||.|..|++++++ +|||||+|.+.++|++|++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----------------------~g~afV~f~~~~~a~~A~~ 59 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------------------KENALVQMADGNQAQLAMS 59 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----------------------SSCCEEECTTTHHHHHHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----------------------CCEEEEEECCHHHHHHHHH
Confidence 468999999999 99999999999999999999986531 6899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 013031 366 ELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r 385 (451)
.||+..+.++.|+|.++...
T Consensus 60 ~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 60 HLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp HHTTCCCSSCCCEEEECCCC
T ss_pred HhCCCeecCeEEEEEEecCC
Confidence 99999999999999988754
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.42 E-value=5.3e-13 Score=126.06 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=71.1
Q ss_pred ccceEEEEcCCCC-cccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 286 LQSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 286 ~~~RTVyV~nLP~-d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
...++|||+|||. ++++++|+++|+.||.|..|+|++++ +|||||+|.+.++|++|+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----------------------~g~afV~F~~~~~A~~Ai 89 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------------------KENALVQMADGNQAQLAM 89 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----------------------SCCEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----------------------CCEEEEEECCHHHHHHHH
Confidence 4578999999999 99999999999999999999997542 689999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeecc
Q 013031 365 AELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~r 385 (451)
+.||+..+.++.|+|.++..+
T Consensus 90 ~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 90 SHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp HHHTTCBCSSSBCEEECCSCC
T ss_pred HHhCCCeECCeEEEEEEecCc
Confidence 999999999999999988654
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.41 E-value=2.7e-13 Score=131.40 Aligned_cols=82 Identities=24% Similarity=0.314 Sum_probs=71.5
Q ss_pred ccceEEEEcCCCCc-ccHHHHHHHHhcCCceEEEEEeCCCC-CCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHH
Q 013031 286 LQSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQT-SGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (451)
Q Consensus 286 ~~~RTVyV~nLP~d-~t~e~L~e~Fs~fG~V~~Vri~~p~~-~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekA 363 (451)
...++|||+|||.+ +|+++|+++|+.||.|..|+|.++.. ++ ..+|||||+|.+.++|++|
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg-----------------~~~g~afV~F~~~~~A~~A 270 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHS-----------------FNNCCAFMVFENKDSAERA 270 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC--------------------CCCEEEEEEESSHHHHHHH
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCC-----------------CCceEEEEEeCCHHHHHHH
Confidence 35689999999999 99999999999999999999976532 11 1389999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeecc
Q 013031 364 IAELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 364 v~~Lng~~~~~~gLrV~l~~~r 385 (451)
+ .||+..+.++.|+|.++..|
T Consensus 271 ~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 271 L-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp G-GGTTEEETTEEEEEEECCCC
T ss_pred H-HhcCCEECCcEEEEEEecCC
Confidence 9 99999999999999988754
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.40 E-value=7.3e-13 Score=127.76 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=71.4
Q ss_pred ccceEEEEcCCCCcccHHHHH----HHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~----e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAe 361 (451)
...|+|||+||+.++|+++|+ ++|+.||.|..|++++.. ..||||||+|++.++|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~--------------------~~~g~afV~f~~~~~a~ 66 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSL--------------------KMRGQAFVIFKEVSSAT 66 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCC--------------------CcceEEEEEECCHHHHH
Confidence 457899999999999999977 899999999999986421 13899999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeeccC
Q 013031 362 KAIAELNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 362 kAv~~Lng~~~~~~gLrV~l~~~r~ 386 (451)
+|++.||+..++++.|+|.++..+.
T Consensus 67 ~A~~~l~g~~~~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 67 NALRSMQGFPFYDKPMRIQYAKTDS 91 (282)
T ss_pred HHHHHhcCCeeCCcEEEEEEeccCc
Confidence 9999999999999999999986544
No 189
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.39 E-value=3.3e-13 Score=119.25 Aligned_cols=78 Identities=14% Similarity=0.194 Sum_probs=64.7
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
+.++|||+|||.++|+++|+++|+.||.|..|++++++.+++ .+|||||+|.+.++|++|++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGR-----------------SRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSS-----------------CCSCEEEEESSTHHHHHHHHS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCC-----------------ccceEEEEEccHHHHHHHHhc
Confidence 468999999999999999999999999999999987653322 389999999999999999995
Q ss_pred HcCCCCCCCceEEEEee
Q 013031 367 LNDEGNWRSGLRVRLML 383 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~ 383 (451)
+..+.++.|+|....
T Consensus 65 --~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 65 --QHILDGKVIDPKRAI 79 (167)
T ss_dssp --CCEETTEECCCEECC
T ss_pred --ccccCCeEccccccc
Confidence 345556667666554
No 190
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.39 E-value=5.3e-13 Score=128.84 Aligned_cols=84 Identities=30% Similarity=0.290 Sum_probs=73.4
Q ss_pred ccceEEEEcCCCCcc-cHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDH-CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~-t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
...++|||+|||.++ ++++|+++|+.||.|..|+|..+.+ + ..+|||||+|++.++|.+|+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~-g-----------------~~~g~afV~f~~~~~A~~A~ 243 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQD-G-----------------QLKGFAVLEYETAEMAEEAQ 243 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSS-C-----------------CEEEEEEEECSSHHHHHHHH
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCC-C-----------------CcccEEEEEeCCHHHHHHHH
Confidence 457899999999995 9999999999999999999876531 1 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeccCC
Q 013031 365 AELNDEGNWRSGLRVRLMLRRGS 387 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~r~~ 387 (451)
+.||+..+.++.|+|.++..+..
T Consensus 244 ~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 244 QQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHTTCEETTEECEEEECCSSSC
T ss_pred HHhCCCccCCeEEEEEEecCCCc
Confidence 99999999999999999876544
No 191
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.38 E-value=1.7e-12 Score=125.23 Aligned_cols=83 Identities=19% Similarity=0.219 Sum_probs=73.3
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+|||.++|+++|+++|+.||.|..|++++++.++. .+|||||+|.+.++|++|++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~~ 156 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQ-----------------SKGYGFAEYMKKDSAARAKSD 156 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCc-----------------cceEEEEEECCHHHHHHHHHH
Confidence 357999999999999999999999999999999987653322 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccC
Q 013031 367 LNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 367 Lng~~~~~~gLrV~l~~~r~ 386 (451)
||+..+.++.|+|.++..+.
T Consensus 157 l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 157 LLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp HTTCEETTEECEEEECCGGG
T ss_pred hCCCEeCCcEEEEEECCCCC
Confidence 99999999999999886543
No 192
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.36 E-value=3.6e-13 Score=119.33 Aligned_cols=78 Identities=14% Similarity=0.026 Sum_probs=68.2
Q ss_pred eEEEEcCC----CCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCC----HHH-
Q 013031 289 RIVVAENL----PEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES----VEL- 359 (451)
Q Consensus 289 RTVyV~nL----P~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet----~Ed- 359 (451)
..|||+|| ++.+++++|+++|+.||+|..++++.|+.+|.. +|||||+|.+ .++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~s-----------------lGfgfVef~d~~g~~d~a 65 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALP-----------------LHVYLIKYASSDGKINDA 65 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCE-----------------EEEEEEECC------CCH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCce-----------------eeEEEEEECCCCCCcchH
Confidence 57999999 999999999999999999999999999876542 9999999996 333
Q ss_pred ---HHHHHH--HHcCCCCCCCceEEEEee
Q 013031 360 ---AEKAIA--ELNDEGNWRSGLRVRLML 383 (451)
Q Consensus 360 ---AekAv~--~Lng~~~~~~gLrV~l~~ 383 (451)
|.+|++ .||+..+.++.|+|.+-.
T Consensus 66 ~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 66 AKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp HHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred HHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 899999 789999999999999764
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.34 E-value=2.1e-12 Score=124.43 Aligned_cols=82 Identities=21% Similarity=0.228 Sum_probs=68.9
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++|||+||+.++|+++|+++|+.||.|..|+|..+. +++ .+|||||+|++.++|.+|++.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~-----------------~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGR-----------------ATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCC-----------------cCcEEEEEeCCHHHHHHHHHH
Confidence 35799999999999999999999999999999998763 111 389999999999999999999
Q ss_pred HcCCCCC----CCceEEEEeeccC
Q 013031 367 LNDEGNW----RSGLRVRLMLRRG 386 (451)
Q Consensus 367 Lng~~~~----~~gLrV~l~~~r~ 386 (451)
||+..+. ++.|+|..+....
T Consensus 157 l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 157 CGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHSCEESSSSCCBCEEEECCCEE
T ss_pred hcCCeEEecCCCceEEEeeccccC
Confidence 9654433 7789999887543
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.34 E-value=1.9e-12 Score=124.73 Aligned_cols=75 Identities=27% Similarity=0.301 Sum_probs=68.9
Q ss_pred ccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 286 ~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
...++|||+|||.++|+++|+++|+.||.|..|+|.+. +|||||+|.+.++|++|++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----------------------kg~afV~f~~~~~A~~A~~ 76 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----------------------RGFGFIRLESRTLAEIAKA 76 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----------------------TTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----------------------CcEEEEEECCHHHHHHHHH
Confidence 45789999999999999999999999999999998532 7899999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 013031 366 ELNDEGNWRSGLRVRLML 383 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~ 383 (451)
.||+..+.++.|+|.++.
T Consensus 77 ~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 77 ELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp HHTTCEETTEECEEEECC
T ss_pred HcCCcEECCceeEeeecc
Confidence 999999999899998775
No 195
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=4.8e-12 Score=107.34 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=66.2
Q ss_pred cceEEEEcCCCCcc-----------cHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeC
Q 013031 287 QSRIVVAENLPEDH-----------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (451)
Q Consensus 287 ~~RTVyV~nLP~d~-----------t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFe 355 (451)
..++|+|.||-... ++++|+++|++||.|..|.|. ++. .+|||||+|+
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~~--------------------~~G~afV~f~ 72 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DRH--------------------PDGVASVSFR 72 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TTC--------------------TTCEEEEECS
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cCC--------------------CCEEEEEEEC
Confidence 57899999993322 257999999999999999763 321 2899999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEEEeeccC
Q 013031 356 SVELAEKAIAELNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 356 t~EdAekAv~~Lng~~~~~~gLrV~l~~~r~ 386 (451)
+.++|++|++.||+..+.++.|+|.++..+.
T Consensus 73 ~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 73 DPEEADYCIQTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred CHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 9999999999999999999999999987543
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.31 E-value=3.2e-12 Score=113.37 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=64.1
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcC----C-------ceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeC
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAV----G-------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~f----G-------~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFe 355 (451)
+.|+|||+|||.++|+++|+++|++| | .|..+++.+ .+|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----------------------~~g~afV~f~ 59 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----------------------DKNFAFLEFR 59 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----------------------TTTEEEEEES
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----------------------CCCEEEEEeC
Confidence 46899999999999999999999999 6 777777642 2789999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEEEee
Q 013031 356 SVELAEKAIAELNDEGNWRSGLRVRLML 383 (451)
Q Consensus 356 t~EdAekAv~~Lng~~~~~~gLrV~l~~ 383 (451)
+.++|++|+ .||+..+.++.|+|....
T Consensus 60 ~~~~A~~A~-~~~~~~~~g~~i~v~~~~ 86 (172)
T 2g4b_A 60 SVDETTQAM-AFDGIIFQGQSLKIRRPH 86 (172)
T ss_dssp SHHHHHHHG-GGTTCEETTEECEEECCS
T ss_pred CHHHHHHHH-HhCCcEecCceeeecCCc
Confidence 999999999 899999988888887653
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.29 E-value=6.2e-12 Score=121.84 Aligned_cols=82 Identities=15% Similarity=0.134 Sum_probs=69.5
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCC-ceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
..++|||+|||.++++++|+++|+.|| .|..|++..++. + ..+|||||+|.+.++|++|++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~-----------------~~~g~afV~f~~~~~a~~A~~ 177 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-N-----------------TSRRFAYIDVTSKEDARYCVE 177 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------------------------CCEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-C-----------------CcceEEEEEECCHHHHHHHHH
Confidence 478999999999999999999999999 999999976532 1 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccC
Q 013031 366 ELNDEGNWRSGLRVRLMLRRG 386 (451)
Q Consensus 366 ~Lng~~~~~~gLrV~l~~~r~ 386 (451)
.||+..++++.|+|.++..+.
T Consensus 178 ~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 178 KLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp HHTTCEETTEECEEEECCCC-
T ss_pred HhCCCEeCCcEEEEEECCCCc
Confidence 999999999999999876443
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.29 E-value=6.7e-12 Score=106.32 Aligned_cols=83 Identities=20% Similarity=0.180 Sum_probs=67.5
Q ss_pred cceEEEEcCC--CCcc--------cHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCC
Q 013031 287 QSRIVVAENL--PEDH--------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (451)
Q Consensus 287 ~~RTVyV~nL--P~d~--------t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet 356 (451)
.+|+|++.|+ +.+. .+++|++.|++||+|.+|+|.+++.... ...+|||||+|++
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~---------------~~~~G~~fV~f~~ 68 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVE---------------VPGCGKIFVEFTS 68 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBC---------------CTTTTEEEEEESS
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCC---------------cCCcEEEEEEECC
Confidence 4678899987 3333 3478999999999999999976643110 0138999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEeec
Q 013031 357 VELAEKAIAELNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 357 ~EdAekAv~~Lng~~~~~~gLrV~l~~~ 384 (451)
.++|++|++.|||..+.++.|+|.++..
T Consensus 69 ~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 69 VFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 9999999999999999999999998864
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.28 E-value=9.5e-12 Score=112.81 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=64.0
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcC----C-------ceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeC
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAV----G-------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~f----G-------~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFe 355 (451)
..|+|||+|||.++|+++|+++|+.| | .|..+++.+ .+|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~-----------------------~~g~afV~F~ 59 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----------------------DKNFAFLEFR 59 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET-----------------------TTTEEEEEES
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC-----------------------CCCEEEEEeC
Confidence 46899999999999999999999999 4 566665531 2899999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEEEeecc
Q 013031 356 SVELAEKAIAELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 356 t~EdAekAv~~Lng~~~~~~gLrV~l~~~r 385 (451)
+.++|++|+ .||+..+.++.|+|.+....
T Consensus 60 ~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 60 SVDETTQAM-AFDGIIFQGQSLKIRRPHDY 88 (198)
T ss_dssp CSHHHHHHG-GGTTEEETTEEEEEECCCCC
T ss_pred CHHHHHHHH-HhcCCEEcCceEEEeCCCCC
Confidence 999999999 89999998888998876544
No 200
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.27 E-value=5.1e-12 Score=118.59 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=63.9
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCce--EEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSV--KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V--~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~ 365 (451)
.++|||+|||.++|+++|+++|+.||.| ..|++..++ + ..+|||||+|++.++|.+|+.
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~-----------------~~~g~gfV~f~~~~~A~~Ai~ 183 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--S-----------------ERSSSGLLEWDSKSDALETLG 183 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--S-----------------SSSEEEEEECSSHHHHHHHHH
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--C-----------------CCceEEEEEeCCHHHHHHHHH
Confidence 5689999999999999999999999999 899986542 1 126899999999999999999
Q ss_pred HHcCCCCCCCc----eEEEE
Q 013031 366 ELNDEGNWRSG----LRVRL 381 (451)
Q Consensus 366 ~Lng~~~~~~g----LrV~l 381 (451)
.||+..+.+.+ +.|++
T Consensus 184 ~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 184 FLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp HHTTCEECCSSSSSCEECEE
T ss_pred HhCCCCccCCCCCcceEEEe
Confidence 99998887764 55554
No 201
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.26 E-value=1.3e-12 Score=116.66 Aligned_cols=82 Identities=18% Similarity=0.190 Sum_probs=66.3
Q ss_pred cccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 285 e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
....++|||+|||.++|+++|+++|+.||.|..+.++ +.. . ...+|||||+|.+.++|++|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~-~~~----------~-------~~~~g~afV~f~~~~~a~~A~ 71 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVV-DVR----------T-------GTNRKFGYVDFESAEDLEKAL 71 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCC-EEE----------E-------ETTTTEEEEEESSHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEE-ECC----------C-------CccccEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999987663222 111 1 123899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeecc
Q 013031 365 AELNDEGNWRSGLRVRLMLRR 385 (451)
Q Consensus 365 ~~Lng~~~~~~gLrV~l~~~r 385 (451)
+||+..+.++.|+|.++..+
T Consensus 72 -~l~g~~~~g~~l~v~~~~~~ 91 (175)
T 1fje_B 72 -ELTGLKVFGNEIKLEKPKGR 91 (175)
T ss_dssp -HGGGEEETTEEEEEECCCCS
T ss_pred -hcCCCEeCCeEEEEecCCCc
Confidence 59999999888998877543
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.23 E-value=1.4e-11 Score=106.81 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=68.0
Q ss_pred cceEEEEcCCC--Cc---ccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHH
Q 013031 287 QSRIVVAENLP--ED---HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (451)
Q Consensus 287 ~~RTVyV~nLP--~d---~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAe 361 (451)
.+|+|++.|+- .+ --+++|++.|++||+|.+|+|.+++.+.. .....+||+||+|++.++|+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~-------------~~~~~~G~~FV~F~~~e~A~ 85 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEE-------------EDAEIIVKIFVEFSIASETH 85 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSS-------------TTCEEEEEEEEEESSHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcc-------------cCCcceEEEEEEECCHHHHH
Confidence 57899999983 22 23689999999999999999987642100 00012799999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeec
Q 013031 362 KAIAELNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 362 kAv~~Lng~~~~~~gLrV~l~~~ 384 (451)
+|++.|||..+.++.|+|.++..
T Consensus 86 ~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 86 KAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp HHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHCCCEECCcEEEEEEcCh
Confidence 99999999999999999998864
No 203
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.23 E-value=5.2e-12 Score=106.73 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=57.4
Q ss_pred EcCCCCcccHHHHHHHH------------hcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHH
Q 013031 293 AENLPEDHCHQNLMKIF------------SAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (451)
Q Consensus 293 V~nLP~d~t~e~L~e~F------------s~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdA 360 (451)
+.||+.++++++|++.| ++||+|..|+|.++.. + ..+|||||+|++.++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~-----------------~~~G~~fV~f~~~~~A 81 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-D-----------------HLVGNVYVKFRREEDA 81 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-S-----------------SSEEEEEEEESCHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-C-----------------CccEEEEEEECCHHHH
Confidence 45566666666665555 9999999999976532 1 1389999999999999
Q ss_pred HHHHHHHcCCCCCCCceEEEEe
Q 013031 361 EKAIAELNDEGNWRSGLRVRLM 382 (451)
Q Consensus 361 ekAv~~Lng~~~~~~gLrV~l~ 382 (451)
++|++.|||..+.++.|+|.+.
T Consensus 82 ~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 82 EKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHHCCCEECCEEEEEEEc
Confidence 9999999999999999998864
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=6.7e-11 Score=99.73 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=56.3
Q ss_pred CcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCce
Q 013031 298 EDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGL 377 (451)
Q Consensus 298 ~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~gL 377 (451)
.++++++|+++|++||.|..|+|+.. .||||||+|++.++|++|++.+++ +.++.|
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~----------------------~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSK----------------------KPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESS----------------------SSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccC----------------------CCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 56899999999999999999999621 289999999999999999998654 457889
Q ss_pred EEEEeeccCCC
Q 013031 378 RVRLMLRRGSK 388 (451)
Q Consensus 378 rV~l~~~r~~k 388 (451)
+|.++..+..+
T Consensus 83 ~V~~a~~~~~~ 93 (100)
T 2d9o_A 83 KISWLEGQPQD 93 (100)
T ss_dssp EEECSSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99988765443
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.21 E-value=1.6e-11 Score=124.81 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=62.6
Q ss_pred cceEEEEcC--CCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHH
Q 013031 287 QSRIVVAEN--LPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (451)
Q Consensus 287 ~~RTVyV~n--LP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv 364 (451)
..++|||+| |+.++|+++|+++|++||+|++|+|.. .||||||+|++.|+|++|+
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----------------------~kgfaFV~f~~~~~A~~Ai 73 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKRAY 73 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----------------------TCSEEEEEESSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHHHH
Confidence 467999999 578999999999999999999998731 1889999999999999999
Q ss_pred HHHcCCCCC---CC--ceEEEEee
Q 013031 365 AELNDEGNW---RS--GLRVRLML 383 (451)
Q Consensus 365 ~~Lng~~~~---~~--gLrV~l~~ 383 (451)
+.|||..+. ++ .|.|.++.
T Consensus 74 ~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 74 VTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp HHTTTCEEECTTSCEEECEEEECS
T ss_pred HHhCCCccccccCCceEEEEEEee
Confidence 999998774 23 36666664
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.12 E-value=1.3e-10 Score=100.12 Aligned_cols=77 Identities=12% Similarity=0.075 Sum_probs=63.8
Q ss_pred cceEEEEcCCC--Cc--------ccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCC
Q 013031 287 QSRIVVAENLP--ED--------HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (451)
Q Consensus 287 ~~RTVyV~nLP--~d--------~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet 356 (451)
.+|+|++.|+= .+ .-+++|++.|++||.|..|.|.++. .+|||||+|++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---------------------~~G~~fV~f~~ 64 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---------------------AQGNVYVKCPS 64 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---------------------TTCCEEEECSS
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---------------------CcEEEEEEECC
Confidence 46788888872 22 1246899999999999999985431 17899999999
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEeec
Q 013031 357 VELAEKAIAELNDEGNWRSGLRVRLMLR 384 (451)
Q Consensus 357 ~EdAekAv~~Lng~~~~~~gLrV~l~~~ 384 (451)
.++|++|++.|||..+.++.|+|.++..
T Consensus 65 ~e~A~~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 65 IAAAIAAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence 9999999999999999999999999853
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=2.6e-09 Score=93.36 Aligned_cols=75 Identities=13% Similarity=0.155 Sum_probs=63.4
Q ss_pred cceEEEEcCCCCc-ccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCC-HHHHHHHH
Q 013031 287 QSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES-VELAEKAI 364 (451)
Q Consensus 287 ~~RTVyV~nLP~d-~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet-~EdAekAv 364 (451)
..+.|||+||+.+ ++.++|+++|+.||+|..|.+.++ .-.|||+|.+ .++|++|+
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g-----------------------~~tgfVrf~~~~~~A~~av 73 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-----------------------AKEGIILFKEKAKEALGKA 73 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-----------------------CSEEEEEESSCHHHHHHHH
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC-----------------------CCEEEEEECCChHHHHHHH
Confidence 5789999999999 999999999999999999998654 2259999999 89999999
Q ss_pred HHHcCC--CCCCCceEEEEeec
Q 013031 365 AELNDE--GNWRSGLRVRLMLR 384 (451)
Q Consensus 365 ~~Lng~--~~~~~gLrV~l~~~ 384 (451)
+.||+. .+.+.-++++++..
T Consensus 74 ~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 74 KDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp HHTTTSCBCTTSSSEEEEECCH
T ss_pred HHhhcCCcEEeCcEEEEEECCC
Confidence 999754 44555678877764
No 208
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=1.1e-08 Score=85.23 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEE
Q 013031 302 HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRL 381 (451)
Q Consensus 302 ~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~l 381 (451)
..+|.+.|+.||+|..||+..+ .+||+|++.++|.+|++ ||+..+.++.|+|++
T Consensus 29 ~~~L~~~F~~~G~Vi~vr~~~d-------------------------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~l 82 (91)
T 2dnr_A 29 IDELLQQFASFGEVILIRFVED-------------------------KMWVTFLEGSSALNVLS-LNGKELLNRTITIAL 82 (91)
T ss_dssp HHHHHHHHHTTCCEEEEEECSS-------------------------SEEEEESSHHHHHHGGG-GTTCEETTEEEEEEE
T ss_pred HHHHHHHHHhCCCeEEEEEecC-------------------------CEEEEECChHHHHHHHh-cCCeEeCCeEEEEEe
Confidence 3679999999999999999643 28999999999999999 999999999999999
Q ss_pred eeccCCC
Q 013031 382 MLRRGSK 388 (451)
Q Consensus 382 ~~~r~~k 388 (451)
+.+.+.+
T Consensus 83 kt~dW~~ 89 (91)
T 2dnr_A 83 KSPSGPS 89 (91)
T ss_dssp CCCSSCS
T ss_pred CCCCccc
Confidence 9877665
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.69 E-value=3.4e-08 Score=92.54 Aligned_cols=72 Identities=14% Similarity=0.084 Sum_probs=59.7
Q ss_pred ccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEE
Q 013031 300 HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRV 379 (451)
Q Consensus 300 ~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Lng~~~~~~gLrV 379 (451)
..+++|++.|++||+|.+|.|+++...++. ....+|++||+|.+.++|++|++.|||+.+.|+.|+|
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~-------------~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~ 207 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEE-------------DAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVA 207 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSST-------------TCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCccc-------------CcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEE
Confidence 356799999999999999999866432211 1123899999999999999999999999999999999
Q ss_pred EEeec
Q 013031 380 RLMLR 384 (451)
Q Consensus 380 ~l~~~ 384 (451)
.++..
T Consensus 208 ~~~~~ 212 (222)
T 3dxb_A 208 EVYDQ 212 (222)
T ss_dssp EECCH
T ss_pred EEcCH
Confidence 98863
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=1.1e-07 Score=79.58 Aligned_cols=70 Identities=11% Similarity=0.131 Sum_probs=57.6
Q ss_pred ceEEEEcCCCCc------cc---HHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHH
Q 013031 288 SRIVVAENLPED------HC---HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (451)
Q Consensus 288 ~RTVyV~nLP~d------~t---~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~E 358 (451)
.-||+|.-++.+ .. ..+|.+.|+.||+|..||+..+ + +||+|.+.+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----------------------~--~fVtF~d~~ 69 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----------------------Q--MLVTFADSH 69 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----------------------E--EEEECSCSH
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----------------------c--EEEEEcChH
Confidence 358888776522 12 3579999999999999999744 2 999999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEee
Q 013031 359 LAEKAIAELNDEGNWRSGLRVRLML 383 (451)
Q Consensus 359 dAekAv~~Lng~~~~~~gLrV~l~~ 383 (451)
+|.+|++ ||+.++.++.|+|++..
T Consensus 70 sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 70 SALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHH-GGGSEETTEEEEEECCC
T ss_pred HHHHHHh-cCCeeeCCeEEEEeccC
Confidence 9999998 99999999999998654
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.86 E-value=2.7e-05 Score=66.87 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=64.9
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcC-----CceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAV-----GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~f-----G~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAe 361 (451)
..|||-+-|||..++...|+.|.+.| |.|+.|-++.+ .+-|+|||++...|-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----------------------H~GAivef~d~~~Ag 76 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----------------------FNGAIIIFRDSKFAA 76 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----------------------TTEEEEECSCHHHHH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----------------------CCceEEEEccchhhH
Confidence 47899999999999999999999999 99999988643 345999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEe
Q 013031 362 KAIAELNDEGNWRSGLRVRLM 382 (451)
Q Consensus 362 kAv~~Lng~~~~~~gLrV~l~ 382 (451)
||.-.|+|.++.++.|++.-+
T Consensus 77 KasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 77 KMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp HHHHHHSSEEETTEEEEEECH
T ss_pred HHHhhcCCeeecCeEEEecCH
Confidence 999999999999888887644
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.66 E-value=0.0096 Score=50.45 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=54.9
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcC-----CceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAV-----GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~f-----G~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAe 361 (451)
-.++|.|.|||.++.++.|+=+|+.- |.|+.|... .+.|+|+|.+.+.|+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~-------------------------~~~AvItF~d~~va~ 61 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL-------------------------GCGGVLTFREPADAE 61 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE-------------------------TTEEEEEESSHHHHH
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc-------------------------CCcEEEEEcChHHHH
Confidence 35799999999999999999999872 689999863 135999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEe
Q 013031 362 KAIAELNDEGNWRSGLRVRLM 382 (451)
Q Consensus 362 kAv~~Lng~~~~~~gLrV~l~ 382 (451)
+.++. ....+.+..|.|.-.
T Consensus 62 rVL~k-~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 62 RVLAQ-ADHELHGAQLSLRPA 81 (104)
T ss_dssp HHHTC-SCCBSSSSBCEEEEC
T ss_pred HHhcC-CcceecCeEEEEEcC
Confidence 98773 234555566777643
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.46 E-value=0.0042 Score=52.67 Aligned_cols=73 Identities=14% Similarity=0.121 Sum_probs=59.2
Q ss_pred ceEEEEcCCCCcc----c-HHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHH
Q 013031 288 SRIVVAENLPEDH----C-HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (451)
Q Consensus 288 ~RTVyV~nLP~d~----t-~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAek 362 (451)
..||+|.||+.++ . .+.++++|..|+++.....++- | + =+.|.|.+.|+|.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS--------------------F--R-Rirv~F~~~~~A~~ 61 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS--------------------F--K-RVRINFSNPLSAAD 61 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT--------------------T--T-EEEEECSSTTHHHH
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc--------------------c--e-EEEEEeCChHHHHH
Confidence 3589999998765 2 2678999999999888766421 1 1 27899999999999
Q ss_pred HHHHHcCCCCCCCceEEEEee
Q 013031 363 AIAELNDEGNWRSGLRVRLML 383 (451)
Q Consensus 363 Av~~Lng~~~~~~gLrV~l~~ 383 (451)
|-.+|++..+.|..|||.++.
T Consensus 62 AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 62 ARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp HHHTSTTSEETTEECEEECCC
T ss_pred HHHHhccceecCceeEEEecC
Confidence 999999999999989998775
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.31 E-value=0.0077 Score=50.58 Aligned_cols=66 Identities=18% Similarity=0.337 Sum_probs=49.9
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Ln 368 (451)
..+++ +||.+....||+++|+.||-|.--.| +...|||.|.+.+.|..|++.++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi-------------------------dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI-------------------------DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE-------------------------ETTEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEE-------------------------cCCeEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999999995432233 13479999999999999999875
Q ss_pred CCCCCCCceEEEEeec
Q 013031 369 DEGNWRSGLRVRLMLR 384 (451)
Q Consensus 369 g~~~~~~gLrV~l~~~ 384 (451)
.. ...+|+.+..
T Consensus 71 k~----~~y~i~ty~e 82 (100)
T 1whv_A 71 YA----ESYRIQTYAE 82 (100)
T ss_dssp HC----CSSEEEEHHH
T ss_pred cC----CceEEEEhHH
Confidence 32 2367776543
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.99 E-value=0.023 Score=49.31 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=50.7
Q ss_pred cceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..+.|.|-||+... .+.|...|++||+|..... +. +..+..|.|++..+|++||.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~---------------------~~NWihI~Y~s~~~A~rAL~- 77 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SN---------------------TGNWMHIRYQSKLQARKALS- 77 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CS---------------------SSSEEEEEESSHHHHHHHHT-
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CC---------------------CCCeEEEEeCCHHHHHHHHH-
Confidence 46789999999885 6678889999999998886 21 14578899999999999999
Q ss_pred HcCCCCCC
Q 013031 367 LNDEGNWR 374 (451)
Q Consensus 367 Lng~~~~~ 374 (451)
.|+..+.+
T Consensus 78 kNG~ii~g 85 (119)
T 1wwh_A 78 KDGRIFGE 85 (119)
T ss_dssp TTTCEETT
T ss_pred hCCeEecC
Confidence 48766643
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.74 E-value=0.0027 Score=66.71 Aligned_cols=58 Identities=22% Similarity=0.224 Sum_probs=43.2
Q ss_pred hcccceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHH
Q 013031 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (451)
Q Consensus 284 ~e~~~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekA 363 (451)
++...|+|||. ++.++++.+|.++|+.||.|.++-+-.++ ..||.|||.+.+++..+
T Consensus 49 ~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----------------------g~~~~vef~~~~~~~~~ 105 (464)
T 3pq1_A 49 REQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----------------------GLYAVVEFCQKESIGSL 105 (464)
T ss_dssp HHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----------------------SEEEEEECC---CCHHH
T ss_pred HHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----------------------CeEEEEEeCCHHHHHHH
Confidence 34457899998 79999999999999999999999985321 45899999999999877
Q ss_pred H
Q 013031 364 I 364 (451)
Q Consensus 364 v 364 (451)
+
T Consensus 106 ~ 106 (464)
T 3pq1_A 106 Q 106 (464)
T ss_dssp H
T ss_pred H
Confidence 5
No 217
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.72 E-value=0.0089 Score=50.33 Aligned_cols=53 Identities=23% Similarity=0.358 Sum_probs=42.6
Q ss_pred EEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 013031 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (451)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Ln 368 (451)
.+++ +||.+....||+++|+.||-| .|+-+- ...|||.|.+.+.|..|++.++
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~Wid------------------------DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID------------------------DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEE------------------------TTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEc------------------------CCeEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999943 232221 3479999999999999999876
No 218
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.68 E-value=0.024 Score=46.87 Aligned_cols=69 Identities=13% Similarity=0.033 Sum_probs=53.4
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~Ln 368 (451)
..|+|++||..+|++++.+.++.+.++...+.+.-+.+.+ ... -.-|||.|.+.|++....+.++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~-------------~~~--~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLY-------------PHM--YARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSST-------------TCC--CEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCC-------------CCc--ceEEEEEeCCHHHHHHHHHHhC
Confidence 3699999999999999999999999887777653322111 001 2349999999999999999999
Q ss_pred CCCC
Q 013031 369 DEGN 372 (451)
Q Consensus 369 g~~~ 372 (451)
|..+
T Consensus 67 g~~F 70 (91)
T 1uw4_A 67 GYVF 70 (91)
T ss_dssp TCEE
T ss_pred CcEE
Confidence 8654
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.12 E-value=0.0031 Score=55.03 Aligned_cols=36 Identities=22% Similarity=0.063 Sum_probs=32.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHH-cCCCCCCCceEEEEee
Q 013031 347 KLHAFVEYESVELAEKAIAEL-NDEGNWRSGLRVRLML 383 (451)
Q Consensus 347 KG~AFVEFet~EdAekAv~~L-ng~~~~~~gLrV~l~~ 383 (451)
+|+++|||.+.++|++|+++| |+..+.+ .|+|+.+.
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~ 49 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDAT 49 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTT
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceeccccc
Confidence 899999999999999999999 9988877 77777554
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.96 E-value=0.0033 Score=55.06 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=24.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHcCCCCCC
Q 013031 347 KLHAFVEYESVELAEKAIAELNDEGNWR 374 (451)
Q Consensus 347 KG~AFVEFet~EdAekAv~~Lng~~~~~ 374 (451)
+||+||+|.+.++|++|++.+++.....
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~~~~~~ 40 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYANDNGVD 40 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred cchhHHHHHHHHhHHHHHHhhcccCCCC
Confidence 8999999999999999999988654333
No 221
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=91.72 E-value=0.22 Score=41.63 Aligned_cols=70 Identities=11% Similarity=0.050 Sum_probs=47.3
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
+-.|+|+.||..+|++++.+.++.+=++.....+. |+. + .+ ... -.-|||.|++.|+.....+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~----G~~-s-----~~---~~~--~SRAYI~F~~~edv~~F~~~f 73 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFA----ADL-S-----LY---PHL--YSRAYINFRNPDDILLFRDRF 73 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCC----CCS-S-----SC---CSC--CCCCEEEESCHHHHHHHHHHS
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeC----Ccc-C-----CC---CCc--ceEEEEEeCCHHHHHHHHHHc
Confidence 34699999999999999888887765543332221 110 0 01 001 123999999999999999999
Q ss_pred cCCCC
Q 013031 368 NDEGN 372 (451)
Q Consensus 368 ng~~~ 372 (451)
+|..+
T Consensus 74 ~g~~F 78 (97)
T 2l08_A 74 DGYIF 78 (97)
T ss_dssp TTEEE
T ss_pred CCcEE
Confidence 88544
No 222
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=91.66 E-value=0.13 Score=57.92 Aligned_cols=88 Identities=25% Similarity=0.377 Sum_probs=65.0
Q ss_pred CChHHHHHHhhccccccCCCccccCH----HHHhhhccC--CCCceecccccch-hhHHHhhcC------------HHHH
Q 013031 193 LNDESIQKVLNQVEYYFSDLNLATTD----HLIRFILKD--PEGYVPISTVASF-KKIKAIISS------------HSHL 253 (451)
Q Consensus 193 ~~~e~~~kI~kQvEyYFSD~NL~~D~----fL~~~i~kd--~dG~VPi~~i~sF-kKmK~Lt~d------------~~~I 253 (451)
.++|..+.|+..|+|.|||+-|.-.. +|+-.+.++ -.|.||+.+|+.| -|+..+.+- ...|
T Consensus 103 ~~~~~~~~~~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~~~~~~~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~ 182 (950)
T 3htx_A 103 TVDEARDEIVGRIKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPFLAISYV 182 (950)
T ss_dssp CHHHHHHHHHHHHHHHTSTGGGGCSSTHHHHHHHHHTSCGGGTTEECHHHHHHTCHHHHHHHHHHCTHHHHCTHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhhhhhhhccCchHHHHHHHHhhcCccccccchhhheehhhhhhhhhhhcCcccccChHHHHHHH
Confidence 35788999999999999999887765 444444444 4589999999998 455554432 3567
Q ss_pred HHHhhcCcceEEeecccccccCCCCcch
Q 013031 254 ASVLRKSSKLVVSEDGKKIKRQNPLTES 281 (451)
Q Consensus 254 ~~ALr~S~~LeVsedg~kVRR~~Pl~e~ 281 (451)
.+|...+..+.+++.+ .|+|.+|.+..
T Consensus 183 ~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 209 (950)
T 3htx_A 183 MKAAAKLADYIVASPH-GLRRKNAYPSE 209 (950)
T ss_dssp HHHHHHCCSSEEEETT-EEEESSCCCHH
T ss_pred HHHhhcCCCcEEeCCc-ccccCCCCCHH
Confidence 7777777666677777 99999988743
No 223
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.26 E-value=1.2 Score=46.96 Aligned_cols=64 Identities=19% Similarity=0.337 Sum_probs=48.3
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~L 367 (451)
...++|+ |+......+|+++|+.||.|.-.++ + ..+|||.|.+.|.|..+++.+
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi--d-----------------------dt~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI--D-----------------------DTSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC--S-----------------------SSEEEEECSCHHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE--c-----------------------CCeEEEEECCHHHHHHHHHHH
Confidence 4566666 9888888999999999996533332 1 347999999999999999999
Q ss_pred cCCCCCCCceEEEE
Q 013031 368 NDEGNWRSGLRVRL 381 (451)
Q Consensus 368 ng~~~~~~gLrV~l 381 (451)
+.. .+++|+.
T Consensus 494 ~~~----~~~~i~~ 503 (507)
T 3d45_A 494 KYA----ESYRIQT 503 (507)
T ss_dssp TTC----SSCEECS
T ss_pred HhC----CceEEEe
Confidence 754 2455543
No 224
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=87.59 E-value=0.36 Score=30.39 Aligned_cols=7 Identities=14% Similarity=0.415 Sum_probs=3.0
Q ss_pred CCCCCCC
Q 013031 81 PAAAMVH 87 (451)
Q Consensus 81 p~~~~~~ 87 (451)
|.+++..
T Consensus 6 plPg~~g 12 (26)
T 2v8f_C 6 PLPGVAS 12 (26)
T ss_pred CCCCCCC
Confidence 3334444
No 225
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=86.98 E-value=0.73 Score=40.50 Aligned_cols=82 Identities=12% Similarity=0.099 Sum_probs=48.4
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEE-EEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~-Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
...|.|=|+|.+.+ ..+.+.|++||.|.. +.+.++.. ..... .....+. ..|.+..+..|+|++..+|++|+.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~-~~~~~-~~~~k~y--P~f~g~NWikItYds~~~A~rAL~- 80 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQ-AMTVG-LQDRQFV--PIFSGNSWTKITYDNPASAVDALL- 80 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-------------CC--CCCEETTEEEEEBSSHHHHHHHHT-
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeecccccccc-ccccc-ccccccc--CccCCCcEEEEEcCCHHHHHHHHH-
Confidence 34678889977664 456779999999865 32211100 00000 0001111 223346788999999999999998
Q ss_pred HcCCCCCCC
Q 013031 367 LNDEGNWRS 375 (451)
Q Consensus 367 Lng~~~~~~ 375 (451)
.||..+.+.
T Consensus 81 ~NG~ii~G~ 89 (132)
T 3p3d_A 81 ENGAVFNGV 89 (132)
T ss_dssp TTTCEETTE
T ss_pred hCCeEeCcE
Confidence 588777554
No 226
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=76.23 E-value=0.88 Score=37.62 Aligned_cols=18 Identities=11% Similarity=0.036 Sum_probs=0.0
Q ss_pred cceEEEEcCCCCcccHHH
Q 013031 287 QSRIVVAENLPEDHCHQN 304 (451)
Q Consensus 287 ~~RTVyV~nLP~d~t~e~ 304 (451)
..++|||+||+.++|++.
T Consensus 96 ~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ------------------
T ss_pred CCCceEeCCCCCCccccc
Confidence 456799999999998763
No 227
>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B
Probab=70.42 E-value=2 Score=27.24 Aligned_cols=17 Identities=41% Similarity=0.763 Sum_probs=14.3
Q ss_pred cccccCCCCCCCCCCCC
Q 013031 37 FSRLNAKAPEFVPTRNP 53 (451)
Q Consensus 37 ~~~~~~~~p~~~p~~~~ 53 (451)
.|+|.+.||||+|+.=.
T Consensus 3 ~S~LS~~ApeF~Psgys 19 (26)
T 1jh4_B 3 MSKLSVNAPEFYPSGYS 19 (26)
T ss_dssp CCCSSCCCSCCCCTTCC
T ss_pred ccccCcCCceeccCccc
Confidence 58899999999998643
No 228
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=70.35 E-value=1.8 Score=39.99 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=34.7
Q ss_pred hccCCCCceecccccchhhHH--HhhcCHHHHHHHhhcCcc--eEEeecccccccCC
Q 013031 224 ILKDPEGYVPISTVASFKKIK--AIISSHSHLASVLRKSSK--LVVSEDGKKIKRQN 276 (451)
Q Consensus 224 i~kd~dG~VPi~~i~sFkKmK--~Lt~d~~~I~~ALr~S~~--LeVsedg~kVRR~~ 276 (451)
+.+|.+|||+++.++. -+.+ ...-+.+.|.++++++++ .+++ +.+||-.+
T Consensus 22 L~ld~~G~v~v~~LL~-~~~~~~~~~~t~~~l~~vV~~~~K~Rf~l~--~~~IRA~q 75 (186)
T 1wfx_A 22 VRLTREGWARVSEVVE-GLRKAGWSWVEEWHIVGVALHDPKGRYELR--NGEIRARY 75 (186)
T ss_dssp CCCCTTCCEEHHHHHH-HHHHTTCTTCCHHHHHHHHHHCSSCCEEEE--TTEEEESS
T ss_pred CccCCCCCEEHHHHHh-hhhhcccCCCCHHHHHHHHhcCCCCceEee--ccEEEecc
Confidence 3578999999999998 3333 234467888888887664 5665 34676654
No 229
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=66.64 E-value=2 Score=41.87 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=20.4
Q ss_pred CCCCCCChHHHHHHhhccccc--cCCCccc
Q 013031 188 HQHGGLNDESIQKVLNQVEYY--FSDLNLA 215 (451)
Q Consensus 188 ~~~~~~~~e~~~kI~kQvEyY--FSD~NL~ 215 (451)
+.-..++..+++.+++-||-| ||-+-+.
T Consensus 31 ~~h~plspr~l~~~~k~ve~~g~~sPe~i~ 60 (262)
T 1d1d_A 31 PAWTPLEPKLITRLADTVRTKGLRSPITMA 60 (262)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCTTSSHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHcCCCChHHHH
Confidence 577889999999999999766 4554443
No 230
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=59.32 E-value=1.9 Score=39.25 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=24.5
Q ss_pred CChHHHHHHhhccccccCCCccccCHHHHhhhcc-----CC-C--Cceecccccc
Q 013031 193 LNDESIQKVLNQVEYYFSDLNLATTDHLIRFILK-----DP-E--GYVPISTVAS 239 (451)
Q Consensus 193 ~~~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~k-----d~-d--G~VPi~~i~s 239 (451)
++.+.++.+++.. +|+...+.+=.-+...+.. +. + |+|...-|..
T Consensus 31 l~~e~l~~l~~~t--~~s~~ei~~l~~~F~~~D~~~~~~d~~~~dG~I~~~E~~~ 83 (214)
T 2l4h_A 31 LSKELLAEYQDLT--FLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS 83 (214)
T ss_dssp CCHHHHHHHHSCC--SCCHHHHHHHHHHHHHHSCGGGCCHHHHTTSEECHHHHTT
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcccccccccccCCcCCHHHHHH
Confidence 6677777777654 4555544321112222222 22 5 9998877776
No 231
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=50.96 E-value=52 Score=23.89 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=42.3
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFet~EdAekAv~~ 366 (451)
..++.|.|+.=..+...|++.+.+ .-|..+.+-.. .+.+.|+|.+.++..++|+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----------------------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----------------------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----------------------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 457899999888899999999999 88888887321 34578899856666666664
No 232
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=50.72 E-value=12 Score=36.86 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCccc
Q 013031 147 HHHRHQNHHHNNNNSHHQ 164 (451)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~ 164 (451)
|||+|+....+|..+||.
T Consensus 5 ~~~~~~~~~~~~~~~~m~ 22 (315)
T 3na8_A 5 HHHHHHSSGLVPRGSHMS 22 (315)
T ss_dssp ------------------
T ss_pred ccccccccCcCCCchhcc
Confidence 344444566899999997
No 233
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C
Probab=38.06 E-value=5.5 Score=33.91 Aligned_cols=16 Identities=6% Similarity=-0.085 Sum_probs=9.5
Q ss_pred HhhhccCCCCceeccc
Q 013031 221 IRFILKDPEGYVPIST 236 (451)
Q Consensus 221 ~~~i~kd~dG~VPi~~ 236 (451)
.+.+-.|.+|+|...-
T Consensus 74 F~~~D~d~dG~I~~~E 89 (143)
T 3a4u_B 74 FKMHDYDGNNLLDGLE 89 (143)
T ss_dssp HHHTCTTCSSCEEHHH
T ss_pred HHHhCCCCCCccCHHH
Confidence 3445567788875443
No 234
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=36.42 E-value=11 Score=32.07 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCccc
Q 013031 150 RHQNHHHNNNNSHHQ 164 (451)
Q Consensus 150 ~~~~~~~~~~~~~~~ 164 (451)
+|+.--.+|-+.++.
T Consensus 8 ~~~~~~~~~~~~~~~ 22 (126)
T 2hgm_A 8 HHHSSGLVPRGSHMA 22 (126)
T ss_dssp ---------------
T ss_pred ccccccccccccccc
Confidence 333445667776666
No 235
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=35.07 E-value=6.6 Score=31.76 Aligned_cols=21 Identities=10% Similarity=0.147 Sum_probs=18.0
Q ss_pred cCCCCcccHHHHHHHHhcCCc
Q 013031 294 ENLPEDHCHQNLMKIFSAVGS 314 (451)
Q Consensus 294 ~nLP~d~t~e~L~e~Fs~fG~ 314 (451)
+++..+.++++|+++|++||-
T Consensus 89 ~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 89 QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhHhHHHHHHHHHHhCC
Confidence 567778889999999999984
No 236
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=35.05 E-value=20 Score=36.64 Aligned_cols=18 Identities=11% Similarity=0.309 Sum_probs=11.6
Q ss_pred cCCCCCCChHHHHHHhhc
Q 013031 187 DHQHGGLNDESIQKVLNQ 204 (451)
Q Consensus 187 ~~~~~~~~~e~~~kI~kQ 204 (451)
+-.+-.++.+...+|++.
T Consensus 36 ~E~RValtP~~V~~L~~~ 53 (394)
T 2qrj_A 36 LEARAALTPTTVKKLIAK 53 (394)
T ss_dssp TCCCCSSCHHHHHHHHHT
T ss_pred CCceeccCHHHHHHHHhC
Confidence 345666777777777654
No 237
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=33.91 E-value=8.6 Score=38.94 Aligned_cols=11 Identities=0% Similarity=0.066 Sum_probs=5.0
Q ss_pred HHHHHHhhccc
Q 013031 196 ESIQKVLNQVE 206 (451)
Q Consensus 196 e~~~kI~kQvE 206 (451)
+.+++.++.||
T Consensus 61 ~~~~~~~~~L~ 71 (371)
T 3tla_A 61 NRFFRGVEFLQ 71 (371)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 238
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=33.83 E-value=1.2e+02 Score=21.27 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEe
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~ 321 (451)
.++.|.|+.-..+...|++.+.+..-|..+.+-
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~ 36 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVN 36 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEE
Confidence 468889998888889999999998888888874
No 239
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=33.53 E-value=8.8 Score=35.72 Aligned_cols=9 Identities=11% Similarity=0.457 Sum_probs=3.9
Q ss_pred cccceEEEE
Q 013031 285 ELQSRIVVA 293 (451)
Q Consensus 285 e~~~RTVyV 293 (451)
+...++|-+
T Consensus 161 dL~gk~v~~ 169 (291)
T 2yjp_A 161 QLKDQTLLV 169 (291)
T ss_dssp GGTTSEEEE
T ss_pred HhCCCEEEE
Confidence 334445443
No 240
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=32.49 E-value=9.4 Score=40.99 Aligned_cols=15 Identities=27% Similarity=0.800 Sum_probs=4.6
Q ss_pred ccccCCCCC--CCCCCC
Q 013031 38 SRLNAKAPE--FVPTRN 52 (451)
Q Consensus 38 ~~~~~~~p~--~~p~~~ 52 (451)
.|+||--|. |.|...
T Consensus 447 ~Ri~aedp~~~f~p~~G 463 (587)
T 3jrx_A 447 ARITSENPDEGFKPSSG 463 (587)
T ss_dssp EEEEC----------CC
T ss_pred EeecccCccccCCCCCc
Confidence 478887773 666544
No 241
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=32.30 E-value=1.4e+02 Score=21.28 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=42.4
Q ss_pred eEEEEcCCCCcccHHHHHHHHhcCCceEEEEEeCCCCCCCCCCCCCccccccCcccCCccEEEEEeC----CHHHHHHHH
Q 013031 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE----SVELAEKAI 364 (451)
Q Consensus 289 RTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~KG~AFVEFe----t~EdAekAv 364 (451)
.++.|.|+.=..+...|++.+.+..-|..+.+-.. .+-+.|+|+ +.++..+++
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----------------------~~~~~v~~~~~~~~~~~i~~~i 60 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL-----------------------QNRADVVFDPNLVKEEDIKEEI 60 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG-----------------------GTEEEEEECTTTCCHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec-----------------------CCEEEEEECCCCCCHHHHHHHH
Confidence 47889999888888999999999888888887422 345889986 456666776
Q ss_pred HHH
Q 013031 365 AEL 367 (451)
Q Consensus 365 ~~L 367 (451)
+.+
T Consensus 61 ~~~ 63 (74)
T 3dxs_X 61 EDA 63 (74)
T ss_dssp HHH
T ss_pred HHC
Confidence 654
No 242
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=32.11 E-value=9.6 Score=35.46 Aligned_cols=17 Identities=6% Similarity=0.149 Sum_probs=11.1
Q ss_pred EEEEEeCCHHHHHHHHH
Q 013031 349 HAFVEYESVELAEKAIA 365 (451)
Q Consensus 349 ~AFVEFet~EdAekAv~ 365 (451)
.-++.|.+.+++.+++.
T Consensus 186 ~~~~~~~~~~~~~~~l~ 202 (291)
T 2yjp_A 186 VKLLKFDQNTETFDALK 202 (291)
T ss_dssp SEEEEESSHHHHHHHHH
T ss_pred ceEEEeCCHHHHHHHHH
Confidence 35677777776666654
No 243
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=32.01 E-value=83 Score=25.13 Aligned_cols=23 Identities=26% Similarity=0.150 Sum_probs=19.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHcC
Q 013031 347 KLHAFVEYESVELAEKAIAELND 369 (451)
Q Consensus 347 KG~AFVEFet~EdAekAv~~Lng 369 (451)
+||.||+++..++...+++.+.+
T Consensus 50 PGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 50 KGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp TTEEEEEESSHHHHHHHHTTCTT
T ss_pred CCEEEEEEecchhHHHHHHCCCC
Confidence 89999999999988888776543
No 244
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=31.52 E-value=10 Score=37.23 Aligned_cols=6 Identities=67% Similarity=0.706 Sum_probs=2.4
Q ss_pred HHHHHc
Q 013031 363 AIAELN 368 (451)
Q Consensus 363 Av~~Ln 368 (451)
|+..||
T Consensus 310 aL~~lN 315 (379)
T 3uau_A 310 ALAILN 315 (379)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 334444
No 245
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=29.24 E-value=12 Score=36.80 Aligned_cols=6 Identities=0% Similarity=0.750 Sum_probs=2.3
Q ss_pred CChHHH
Q 013031 193 LNDESI 198 (451)
Q Consensus 193 ~~~e~~ 198 (451)
+++++.
T Consensus 29 ld~~tV 34 (379)
T 3uau_A 29 IDEKTV 34 (379)
T ss_dssp SCHHHH
T ss_pred ccHHHH
Confidence 334433
No 246
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=29.10 E-value=12 Score=37.14 Aligned_cols=10 Identities=10% Similarity=0.059 Sum_probs=4.3
Q ss_pred HHHHHHhcCC
Q 013031 304 NLMKIFSAVG 313 (451)
Q Consensus 304 ~L~e~Fs~fG 313 (451)
.|+++=+.||
T Consensus 218 aikeygkdyg 227 (564)
T 4faj_A 218 AIKEYGKDYG 227 (564)
T ss_dssp HHHHHGGGTT
T ss_pred HHHHhccccC
Confidence 3444444444
No 247
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=28.48 E-value=12 Score=34.19 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=6.2
Q ss_pred ccchhhH-HHhhcC
Q 013031 237 VASFKKI-KAIISS 249 (451)
Q Consensus 237 i~sFkKm-K~Lt~d 249 (451)
-..|.+| .+|..|
T Consensus 47 GaAF~~IVtSlV~d 60 (174)
T 2oar_A 47 GTAFTALVTKFTDS 60 (174)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 4556654 334433
No 248
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1
Probab=28.01 E-value=12 Score=37.67 Aligned_cols=10 Identities=20% Similarity=-0.014 Sum_probs=1.7
Q ss_pred CCCCCCCccc
Q 013031 155 HHNNNNSHHQ 164 (451)
Q Consensus 155 ~~~~~~~~~~ 164 (451)
..+|....|+
T Consensus 12 ~~~~~~~~mk 21 (393)
T 1wuf_A 12 GLVPRGSHMY 21 (393)
T ss_dssp -------CEE
T ss_pred CccCCCCcCE
Confidence 4566666664
No 249
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=27.37 E-value=13 Score=34.46 Aligned_cols=8 Identities=0% Similarity=0.023 Sum_probs=3.5
Q ss_pred ccceEEEE
Q 013031 286 LQSRIVVA 293 (451)
Q Consensus 286 ~~~RTVyV 293 (451)
+..++|-|
T Consensus 162 L~G~~v~v 169 (283)
T 2yln_A 162 IKGVKTAQ 169 (283)
T ss_dssp CTTSEEEE
T ss_pred hCCCEEEE
Confidence 34444443
No 250
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=26.94 E-value=14 Score=31.54 Aligned_cols=11 Identities=9% Similarity=0.163 Sum_probs=5.1
Q ss_pred cCCCCceeccc
Q 013031 226 KDPEGYVPIST 236 (451)
Q Consensus 226 kd~dG~VPi~~ 236 (451)
.|.+|.+....
T Consensus 77 ~d~dG~Ld~~E 87 (121)
T 3fia_A 77 MNNDGRMDQVE 87 (121)
T ss_dssp TTCSSEECHHH
T ss_pred CCCCCcCCHHH
Confidence 34555554433
No 251
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=26.67 E-value=14 Score=33.85 Aligned_cols=9 Identities=0% Similarity=0.305 Sum_probs=4.4
Q ss_pred HHHHHHHhc
Q 013031 303 QNLMKIFSA 311 (451)
Q Consensus 303 e~L~e~Fs~ 311 (451)
.+|+++.++
T Consensus 138 ~EIRDlLk~ 146 (174)
T 2oar_A 138 TEIRDLLAQ 146 (174)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 345555543
No 252
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=26.13 E-value=14 Score=34.21 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=9.8
Q ss_pred EEEEEeCCHHHHHHHHH
Q 013031 349 HAFVEYESVELAEKAIA 365 (451)
Q Consensus 349 ~AFVEFet~EdAekAv~ 365 (451)
.-++.|.+.+++.+++.
T Consensus 184 ~~~~~~~~~~~~~~~l~ 200 (283)
T 2yln_A 184 AQLVPVDGLAQSLTLIE 200 (283)
T ss_dssp CEEEECSSHHHHHHHHH
T ss_pred CeEEEeCCHHHHHHHHH
Confidence 34566666666555544
No 253
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=25.66 E-value=15 Score=35.52 Aligned_cols=28 Identities=11% Similarity=0.115 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHcCCCCCCCceEEEEe
Q 013031 355 ESVELAEKAIAELNDEGNWRSGLRVRLM 382 (451)
Q Consensus 355 et~EdAekAv~~Lng~~~~~~gLrV~l~ 382 (451)
.+.+++.++++.|........|+-+..+
T Consensus 249 ~~~~~~~~~~~~l~~~~~~~~GvVlN~~ 276 (299)
T 3cio_A 249 NTAKEVSLSMQRLEQAGVNIKGAILNGV 276 (299)
T ss_dssp SCTTHHHHHHHHHHHTTCCCCCEEEEEC
T ss_pred ChHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 4456777888777654332334444333
No 254
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=25.29 E-value=78 Score=23.79 Aligned_cols=35 Identities=11% Similarity=0.042 Sum_probs=25.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEee
Q 013031 348 LHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLML 383 (451)
Q Consensus 348 G~AFVEFet~EdAekAv~~Lng~~~~~~gLrV~l~~ 383 (451)
.|.||+-... .|+++++.|++..+.++.++|+.+.
T Consensus 41 ~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 41 NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp SCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 4788988875 5788999999888888888887653
No 255
>4g2c_A DYP2; DYE peroxidase, oxidoreductase; HET: HEM; 2.25A {Amycolatopsis SP}
Probab=25.11 E-value=15 Score=38.70 Aligned_cols=13 Identities=0% Similarity=-0.192 Sum_probs=6.6
Q ss_pred ccccchhhHHHhh
Q 013031 235 STVASFKKIKAII 247 (451)
Q Consensus 235 ~~i~sFkKmK~Lt 247 (451)
.+-.++.=+++|.
T Consensus 116 NIafS~~GL~aLG 128 (493)
T 4g2c_A 116 GVGLTAHGYATLG 128 (493)
T ss_dssp EEEECHHHHHHHT
T ss_pred EEEECHHHHHHcC
Confidence 3444555555554
No 256
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=25.04 E-value=15 Score=36.62 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=6.5
Q ss_pred CCHHHHHHHHHHH
Q 013031 355 ESVELAEKAIAEL 367 (451)
Q Consensus 355 et~EdAekAv~~L 367 (451)
-+.+.+-.++..+
T Consensus 230 id~D~~Aa~lA~~ 242 (332)
T 4axs_A 230 IDKDFALAKIADA 242 (332)
T ss_dssp CCHHHHHHHHHHH
T ss_pred echHHHHHHHHHH
Confidence 4555555555543
No 257
>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1
Probab=24.36 E-value=19 Score=36.01 Aligned_cols=9 Identities=22% Similarity=0.124 Sum_probs=2.2
Q ss_pred CCCCCCccc
Q 013031 156 HNNNNSHHQ 164 (451)
Q Consensus 156 ~~~~~~~~~ 164 (451)
.++....|+
T Consensus 13 ~~~~~~~mk 21 (386)
T 1wue_A 13 LVPRGSHMN 21 (386)
T ss_dssp ----CCCCC
T ss_pred cCCCCCcCE
Confidence 444444443
No 258
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=24.27 E-value=16 Score=36.53 Aligned_cols=11 Identities=18% Similarity=0.386 Sum_probs=6.3
Q ss_pred HHhhccccccC
Q 013031 200 KVLNQVEYYFS 210 (451)
Q Consensus 200 kI~kQvEyYFS 210 (451)
.++.-++||+|
T Consensus 84 ~lR~~FDYfLs 94 (332)
T 2es4_D 84 AVREFFDYCLT 94 (332)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 35555566666
No 259
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=24.09 E-value=16 Score=34.60 Aligned_cols=11 Identities=9% Similarity=-0.278 Sum_probs=5.2
Q ss_pred HHHHHHHHHHc
Q 013031 358 ELAEKAIAELN 368 (451)
Q Consensus 358 EdAekAv~~Ln 368 (451)
++.+++++.|.
T Consensus 178 ~~~~~~a~~l~ 188 (288)
T 1jxh_A 178 QEMLAQGRALL 188 (288)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44445555443
No 260
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=23.58 E-value=17 Score=34.56 Aligned_cols=87 Identities=10% Similarity=0.111 Sum_probs=44.1
Q ss_pred ceEEEEcCCCCcccHHHHHHHHhcCC-ceEEEEEeCCCCCCCCCCCCCccccccCcccCC-ccEEEEEeCCHHHHHHHHH
Q 013031 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSN-KLHAFVEYESVELAEKAIA 365 (451)
Q Consensus 288 ~RTVyV~nLP~d~t~e~L~e~Fs~fG-~V~~Vri~~p~~~~~~~p~~~R~~K~~g~~~~~-KG~AFVEFet~EdAekAv~ 365 (451)
.+.||+++- ...+.|.+.+...| .|..+.+.+-. ... ..- .... ..+.. ..+-.|.|-+.+.++..++
T Consensus 158 ~~vLi~rg~---~~r~~L~~~L~~~G~~v~~~~~Y~~~-~~~----~~~-~~~~-~~l~~~~~~d~v~ftS~~~v~~f~~ 227 (286)
T 1jr2_A 158 LPLLFPCGN---LKREILPKALKDKGIAMESITVYQTV-AHP----GIQ-GNLN-SYYSQQGVPASITFFSPSGLTYSLK 227 (286)
T ss_dssp SCEEEEESC---GGGCCHHHHHHTTTCCEEEEECEEEE-ECT----THH-HHHH-HHHHHHCSCSEEEESSHHHHHHHHH
T ss_pred CeEEEECCh---hhHHHHHHHHHHCCCeeEEEEEEEEe-eCC----CcH-HHHH-HHHHhCCCCCEEEEEChHHHHHHHH
Confidence 467777652 33456777788877 45555442211 000 000 0000 00000 2356799999999988887
Q ss_pred HHcC-CCCCCCceEEEEeec
Q 013031 366 ELND-EGNWRSGLRVRLMLR 384 (451)
Q Consensus 366 ~Lng-~~~~~~gLrV~l~~~ 384 (451)
.+.. ...|..++++-.+..
T Consensus 228 ~~~~~~~~~l~~~~i~aIG~ 247 (286)
T 1jr2_A 228 HIQELSGDNIDQIKFAAIGP 247 (286)
T ss_dssp HHHHHHGGGGGGSEEEESSH
T ss_pred HHhhhccccccCCEEEEECH
Confidence 6643 112334566555544
No 261
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=23.36 E-value=19 Score=31.24 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=9.0
Q ss_pred ceEEEEcCCCCccc
Q 013031 288 SRIVVAENLPEDHC 301 (451)
Q Consensus 288 ~RTVyV~nLP~d~t 301 (451)
...|||...|..+.
T Consensus 88 ~k~vFI~w~Pd~a~ 101 (139)
T 2l72_A 88 NKIQFVLWCPDNAP 101 (139)
T ss_dssp SCEEEEEECCTTSC
T ss_pred CcEEEEEECCCCCC
Confidence 45677777776553
No 262
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=21.70 E-value=19 Score=35.16 Aligned_cols=7 Identities=14% Similarity=0.188 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 013031 361 EKAIAEL 367 (451)
Q Consensus 361 ekAv~~L 367 (451)
++.++++
T Consensus 237 ~~~a~~~ 243 (314)
T 3fwy_A 237 DRFCKET 243 (314)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3333333
No 263
>4ec6_A Putative uncharacterized protein; GRAM-positive, conjugation, NTF2-like, unknown function; 2.50A {Enterococcus faecalis}
Probab=21.34 E-value=19 Score=32.51 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=18.0
Q ss_pred HHHHHhhccccccCCC-cc-ccCHHHHhhhcc
Q 013031 197 SIQKVLNQVEYYFSDL-NL-ATTDHLIRFILK 226 (451)
Q Consensus 197 ~~~kI~kQvEyYFSD~-NL-~~D~fL~~~i~k 226 (451)
+.-..+--|-+|||+. |. .++.+|...+++
T Consensus 57 vDvF~RyFLs~YfS~~~~~~~~q~~LkdFvS~ 88 (161)
T 4ec6_A 57 IDTFGRYFLTYYFSQEKNQENYQSSLRTYVSE 88 (161)
T ss_dssp HHHHHHHHHHHHTCCCCCHHHHHHHHGGGBCT
T ss_pred ceeeehhhhHHHhCCChhhhhHHHHHHHHhhh
Confidence 3345556666888875 22 456677776653
No 264
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=21.27 E-value=20 Score=33.96 Aligned_cols=9 Identities=0% Similarity=-0.068 Sum_probs=3.4
Q ss_pred HHHHHhcCC
Q 013031 305 LMKIFSAVG 313 (451)
Q Consensus 305 L~e~Fs~fG 313 (451)
|.++..++|
T Consensus 112 ~~~~~~~~~ 120 (288)
T 1jxh_A 112 VAERLQRHH 120 (288)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHCC
Confidence 333333343
No 265
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=20.71 E-value=21 Score=35.61 Aligned_cols=14 Identities=14% Similarity=0.121 Sum_probs=6.8
Q ss_pred EEeCCHHHHHHHHH
Q 013031 352 VEYESVELAEKAIA 365 (451)
Q Consensus 352 VEFet~EdAekAv~ 365 (451)
+.--+.+++++.++
T Consensus 269 i~~it~~e~~~~~~ 282 (332)
T 4axs_A 269 LKTVDVKALNNFIN 282 (332)
T ss_dssp CSSCBHHHHHHHHH
T ss_pred cccCCHHHHHHHHH
Confidence 33345555555443
No 266
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=20.35 E-value=21 Score=32.03 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=10.1
Q ss_pred HHhhhccCCCCc-eeccccc
Q 013031 220 LIRFILKDPEGY-VPISTVA 238 (451)
Q Consensus 220 L~~~i~kd~dG~-VPi~~i~ 238 (451)
|.+.+..+.+|. |.+.-++
T Consensus 96 lf~~~D~d~dG~~I~f~EF~ 115 (214)
T 2l4h_A 96 ICRVFSTSPAKDSLSFEDFL 115 (214)
T ss_dssp HHHHHCCSSSCCSEEHHHHH
T ss_pred HHHHhCcCCCCCEecHHHHH
Confidence 444444556666 6655443
No 267
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=20.20 E-value=22 Score=31.07 Aligned_cols=10 Identities=10% Similarity=-0.044 Sum_probs=4.3
Q ss_pred CChHHHHHHh
Q 013031 193 LNDESIQKVL 202 (451)
Q Consensus 193 ~~~e~~~kI~ 202 (451)
++.|+.-.|+
T Consensus 38 ~DPeLa~ALr 47 (132)
T 1yx4_A 38 ADPELALALR 47 (132)
T ss_dssp GCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 3444444433
No 268
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=20.17 E-value=22 Score=32.64 Aligned_cols=9 Identities=0% Similarity=0.209 Sum_probs=3.7
Q ss_pred cHHHHHHHH
Q 013031 301 CHQNLMKIF 309 (451)
Q Consensus 301 t~e~L~e~F 309 (451)
+.+.|+++.
T Consensus 120 ~~~~i~~l~ 128 (236)
T 2px7_A 120 SRGLVARVL 128 (236)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 444444433
No 269
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=20.16 E-value=22 Score=35.83 Aligned_cols=7 Identities=71% Similarity=1.089 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 013031 147 HHHRHQN 153 (451)
Q Consensus 147 ~~~~~~~ 153 (451)
|||..||
T Consensus 9 ~~~~~~~ 15 (380)
T 3c3r_A 9 HHHSGQN 15 (380)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3333443
Done!