Your job contains 1 sequence.
>013033
MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG
LCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG
AGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSM
GSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGN
IGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKY
GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP
INYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKN
STTKNSDDSSKVDHPPHSVPNCSEPPHDQSN
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013033
(451 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2182988 - symbol:AT5G18550 species:3702 "Arabi... 747 5.1e-74 1
TAIR|locus:2043368 - symbol:AT2G47850 species:3702 "Arabi... 745 8.4e-74 1
TAIR|locus:2075477 - symbol:ZFN1 "zinc finger protein 1" ... 714 1.6e-70 1
TAIR|locus:2010562 - symbol:AT1G04990 species:3702 "Arabi... 693 2.7e-68 1
TAIR|locus:2101170 - symbol:AT3G48440 species:3702 "Arabi... 668 1.2e-65 1
TAIR|locus:2081066 - symbol:AT3G06410 species:3702 "Arabi... 565 9.9e-55 1
TAIR|locus:2087775 - symbol:HUA1 "ENHANCER OF AG-4 1" spe... 510 6.7e-49 1
TAIR|locus:2171407 - symbol:ZFN3 "zinc finger nuclease 3"... 493 4.2e-47 1
TAIR|locus:1006230718 - symbol:AT1G48195 species:3702 "Ar... 251 5.4e-21 1
TAIR|locus:2013763 - symbol:AT1G29570 species:3702 "Arabi... 148 1.3e-07 1
TAIR|locus:2013758 - symbol:AT1G29560 species:3702 "Arabi... 142 1.8e-06 1
ZFIN|ZDB-GENE-990806-20 - symbol:cth1 "cth1" species:7955... 116 3.5e-06 2
RGD|1310618 - symbol:Mkrn2 "makorin, ring finger protein,... 88 3.5e-05 3
MGI|MGI:1928482 - symbol:Mbnl1 "muscleblind-like 1 (Droso... 115 4.9e-05 2
UNIPROTKB|Q9H000 - symbol:MKRN2 "Probable E3 ubiquitin-pr... 86 5.8e-05 3
UNIPROTKB|F1M3I4 - symbol:Mkrn2 "Protein Mkrn2" species:1... 86 5.9e-05 3
UNIPROTKB|E2QSA8 - symbol:MBNL1 "Uncharacterized protein"... 114 6.2e-05 2
UNIPROTKB|Q5ZKW9 - symbol:MBNL1 "Muscleblind-like protein... 115 6.4e-05 2
MGI|MGI:1914277 - symbol:Mkrn2 "makorin, ring finger prot... 88 6.9e-05 3
UNIPROTKB|F1NBC8 - symbol:MBNL1 "Muscleblind-like protein... 115 7.3e-05 2
WB|WBGene00013319 - symbol:ccch-5 species:6239 "Caenorhab... 118 7.5e-05 1
UNIPROTKB|G3X6F9 - symbol:MBNL1 "Uncharacterized protein"... 114 8.3e-05 2
UNIPROTKB|E2QSC6 - symbol:MBNL1 "Uncharacterized protein"... 114 9.1e-05 2
UNIPROTKB|F6UUJ0 - symbol:MBNL1 "Uncharacterized protein"... 114 9.6e-05 2
UNIPROTKB|F6UU15 - symbol:MBNL1 "Uncharacterized protein"... 114 0.00011 2
UNIPROTKB|F1SJM7 - symbol:MBNL1 "Uncharacterized protein"... 114 0.00011 2
ASPGD|ASPL0000062209 - symbol:AN0298 species:162425 "Emer... 94 0.00011 2
UNIPROTKB|H7C4T5 - symbol:MBNL1 "Muscleblind-like protein... 111 0.00012 2
UNIPROTKB|E2REH2 - symbol:MKRN2 "Uncharacterized protein"... 83 0.00012 3
UNIPROTKB|C9JP00 - symbol:MBNL1 "Muscleblind-like protein... 111 0.00014 2
UNIPROTKB|Q9NR56 - symbol:MBNL1 "Muscleblind-like protein... 111 0.00021 2
WB|WBGene00009537 - symbol:ccch-2 species:6239 "Caenorhab... 113 0.00021 1
UNIPROTKB|F1NI93 - symbol:MKRN2 "Uncharacterized protein"... 87 0.00022 3
UNIPROTKB|Q13064 - symbol:MKRN3 "Probable E3 ubiquitin-pr... 82 0.00026 3
UNIPROTKB|C9JEV9 - symbol:CPSF4 "Cleavage and polyadenyla... 113 0.00038 1
MGI|MGI:1861602 - symbol:Cpsf4 "cleavage and polyadenylat... 113 0.00038 1
UNIPROTKB|E2RBK7 - symbol:CPSF4 "Uncharacterized protein"... 113 0.00039 1
UNIPROTKB|Q9PTI4 - symbol:MKRN1 "Uncharacterized protein"... 95 0.00055 3
UNIPROTKB|F1LPR3 - symbol:Mbnl1 "Protein Mbnl1" species:1... 114 0.00067 1
UNIPROTKB|I3LVF0 - symbol:I3LVF0 "Uncharacterized protein... 84 0.00076 2
UNIPROTKB|F1M9N4 - symbol:Mbnl1 "Protein Mbnl1" species:1... 114 0.00087 1
DICTYBASE|DDB_G0270148 - symbol:cpsf4 "cleavage and polya... 90 0.00089 2
>TAIR|locus:2182988 [details] [associations]
symbol:AT5G18550 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 eggNOG:NOG312935
HOGENOM:HOG000237733 ProtClustDB:CLSN2681554 EMBL:AC069328
EMBL:BT010886 EMBL:AK230175 IPI:IPI00533261 RefSeq:NP_197356.2
UniGene:At.22535 ProteinModelPortal:Q6NPN3 SMR:Q6NPN3 STRING:Q6NPN3
PaxDb:Q6NPN3 PRIDE:Q6NPN3 EnsemblPlants:AT5G18550.1 GeneID:831973
KEGG:ath:AT5G18550 TAIR:At5g18550 InParanoid:Q6NPN3 OMA:GSQPCAY
PhylomeDB:Q6NPN3 Genevestigator:Q6NPN3 GermOnline:AT5G18550
Uniprot:Q6NPN3
Length = 465
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 152/379 (40%), Positives = 213/379 (56%)
Query: 3 DNRQVKSNAVANQSADN-IEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGL 61
++R S+ + Q + IE ++WRL + GGG +P RP EPDC++Y RTG+
Sbjct: 11 ESRSDPSHEWSAQGTETGIEASMWRLGLRGG--GGG---GETFPERPDEPDCIYYLRTGV 65
Query: 62 CGYGSNCRFNHPAYAAQ--GAQYRE--ELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117
CGYGS CRFNHP A G E E PER GQP C ++++TGTCK+G++CKYHHP+
Sbjct: 66 CGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQ 125
Query: 118 RNGAG---PVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGN 174
G PVS N +G P+R EK C Y+MRTG CKFG C++HHP P G P
Sbjct: 126 GGGGDSVTPVSLNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPP--GVQAPSQQQ 183
Query: 175 ASLGSMGSSVLPSSGLQYAGSLPTWSLQRA-PYL--SSRLQGTQSYMPLIVSPSQGIVPA 231
S G ++ PS Q S + + A P L S +Q Y +++ P G+VP
Sbjct: 184 QQQLSAGPTMYPSLQSQTVPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVLPP--GMVPY 241
Query: 232 PGWNTYMGNIGPL-SPTS--IAGSNLIYS----SRNQGDLGAGAQMHILSASSQNLPERP 284
GWN Y ++ + SP + G++ +Y S + +G +S Q P+RP
Sbjct: 242 SGWNPYQASVSAMPSPGTQPSMGTSSVYGITPLSPSAPAYQSGPSSTGVSNKEQTFPQRP 301
Query: 285 DQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGIC 344
+QP+C+Y+M TG CK+G C+FHHP E A AS + +GLP RPG C++++ +GIC
Sbjct: 302 EQPECQYFMRTGDCKFGTSCRFHHPMEA-ASPEASTLSHIGLPLRPGAVPCTHFAQHGIC 360
Query: 345 KFGPTCRFDHPYAGYPINY 363
KFGP C+FDH ++Y
Sbjct: 361 KFGPACKFDHSLGSSSLSY 379
Score = 217 (81.4 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 46/127 (36%), Positives = 73/127 (57%)
Query: 73 PAY----AAQGAQYREE-LPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFN 127
PAY ++ G +E+ P+R QP+C Y+++TG CK+G++C++HHP + + +
Sbjct: 279 PAYQSGPSSTGVSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEASTLS 338
Query: 128 ILGLPMRQDEKSCPYYMRTGSCKFGVACKFHH----------PQPSSLGTALPLTGN-AS 176
+GLP+R C ++ + G CKFG ACKF H P PSSL T +P+ +S
Sbjct: 339 HIGLPLRPGAVPCTHFAQHGICKFGPACKFDHSLGSSSLSYSPSPSSL-TDMPVAPYPSS 397
Query: 177 LGSMGSS 183
LG++ S
Sbjct: 398 LGTLAPS 404
>TAIR|locus:2043368 [details] [associations]
symbol:AT2G47850 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AC005309 EMBL:BT030391
EMBL:BT004106 IPI:IPI00519400 PIR:C84920 RefSeq:NP_001078078.1
RefSeq:NP_182306.2 UniGene:At.21006 ProteinModelPortal:Q84W91
SMR:Q84W91 PaxDb:Q84W91 PRIDE:Q84W91 EnsemblPlants:AT2G47850.1
EnsemblPlants:AT2G47850.3 GeneID:819397 KEGG:ath:AT2G47850
TAIR:At2g47850 eggNOG:NOG312935 HOGENOM:HOG000237733
InParanoid:Q84W91 OMA:RYGVACK PhylomeDB:Q84W91
ProtClustDB:CLSN2680305 Genevestigator:Q84W91 GermOnline:AT2G47850
Uniprot:Q84W91
Length = 468
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 156/357 (43%), Positives = 212/357 (59%)
Query: 17 ADN-IEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA- 74
AD ++E++WRL G+ S YP RPG PDC +Y RTG+CGYG+ CR+NHP
Sbjct: 24 ADTGLQESMWRL---------GLGSDS-YPERPGAPDCAYYMRTGVCGYGNRCRYNHPRD 73
Query: 75 YAAQGAQYRE--ELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGL 131
A+ A R + PER G+P C +YLKTGTCK+G++CK+HHPK+ G+ V NI G
Sbjct: 74 RASVEATVRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGY 133
Query: 132 PMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQ 191
P+R+ + C YY++TG CKFG+ CKFHHPQP+ GT +P AS SV Q
Sbjct: 134 PVREGDNECSYYLKTGQCKFGITCKFHHPQPA--GTTVP-PPPASAPQFYPSVQSLMPDQ 190
Query: 192 YAGSLPTWSLQRAPYL--SSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSP-- 246
Y G P+ SL+ A L S +QG +Y P++++P G+VP PGW+ Y + P LSP
Sbjct: 191 YGG--PSSSLRVARTLLPGSYMQG--AYGPMLLTP--GVVPIPGWSPYSAPVSPALSPGA 244
Query: 247 ------TSIAGSNLIYSSRNQ--GDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTC 298
TS+ G + S+ G + + + Q PERP +P+C+YY+ TG C
Sbjct: 245 QHAVGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDC 304
Query: 299 KYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 355
K+G CKFHHP++R+ A + P+GLP RPG C+ Y G CKFG TC+FDHP
Sbjct: 305 KFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHP 361
Score = 195 (73.7 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 62/191 (32%), Positives = 89/191 (46%)
Query: 36 GGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYA----AQGAQYREELPERNG 91
G + + +P RPGEP+C +Y +TG C +G++C+F+HP A LP R G
Sbjct: 278 GVIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPG 337
Query: 92 QPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKF 151
C +Y++ G CK+GSTCK+ HP G + +N + D PY + S
Sbjct: 338 VQRCTFYVQNGFCKFGSTCKFDHPM-----GTIRYNPSASSLA-DAPVAPYPV---SSLL 388
Query: 152 GVACKFHHPQPSSLGTALPLTGNASLGSM-GSSVLPSSGLQYAGSLPTWSLQRAPYLSSR 210
G PSS T L + G A M G S+ AG + + S P+ S
Sbjct: 389 GALAA----APSSSSTEL-IAGGAKDAYMTGVPTSRSTSNISAGLIFSQSGGSIPF--SE 441
Query: 211 LQ-GTQSYMPL 220
LQ +QS +PL
Sbjct: 442 LQLSSQSSLPL 452
>TAIR|locus:2075477 [details] [associations]
symbol:ZFN1 "zinc finger protein 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0004518 "nuclease activity" evidence=TAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0010313 "phytochrome
binding" evidence=IPI] [GO:0017148 "negative regulation of
translation" evidence=IMP] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IPI] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0017148 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0048027 GO:GO:0004518 HOGENOM:HOG000237733
EMBL:AF138743 EMBL:AC018363 EMBL:AK117978 EMBL:BT025966
IPI:IPI00539955 PIR:T48874 RefSeq:NP_566183.1 UniGene:At.23706
ProteinModelPortal:Q8GXX7 SMR:Q8GXX7 STRING:Q8GXX7 PaxDb:Q8GXX7
PRIDE:Q8GXX7 EnsemblPlants:AT3G02830.1 GeneID:821230
KEGG:ath:AT3G02830 GeneFarm:4898 TAIR:At3g02830 eggNOG:NOG329662
InParanoid:Q8GXX7 OMA:SSDDQQR PhylomeDB:Q8GXX7
ProtClustDB:CLSN2917075 Genevestigator:Q8GXX7 GermOnline:AT3G02830
Uniprot:Q8GXX7
Length = 397
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 145/341 (42%), Positives = 195/341 (57%)
Query: 21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA---YAA 77
++A+W++ + ++ + YP RPGEPDC +Y RTGLC +GS CRFNHP
Sbjct: 18 QDAMWQMNLSSDE----TMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVI 73
Query: 78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
A+ R E PER GQP+C YYLKTGTCK+G TCK+HHP+++ G AG VS N+LG P+R +
Sbjct: 74 ATARMRGEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSN 133
Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL 196
E C Y++RTG CKFG CKF+HPQP +P +G S +S + S Q S
Sbjct: 134 EVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQSYPWSRASFIASPRWQDPSSY 193
Query: 197 PTWSLQRAPYLSSRLQGTQSYMPLI--VSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNL 254
+ + P +QG Y + VSPS G + N S + GS
Sbjct: 194 ASLIM---PQGVVPVQGWNPYSGQLGSVSPS-GTGNDQNYRNLQQNETIESGSQSQGS-- 247
Query: 255 IYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIA 314
+S N G + L + PERP QP+C++YM TG CK+G CKFHHP++R A
Sbjct: 248 -FSGYNPGSSVPLGGYYALPRENV-FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQA 305
Query: 315 QSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 355
+ +GLP RPG+ +C Y+ YGICKFGP+C+FDHP
Sbjct: 306 PPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHP 346
>TAIR|locus:2010562 [details] [associations]
symbol:AT1G04990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=RCA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003723 GO:GO:0090305 EMBL:AC004809
GO:GO:0004518 HOGENOM:HOG000237733 EMBL:AY048253 EMBL:AY113065
IPI:IPI00522113 PIR:F86183 RefSeq:NP_563725.1 RefSeq:NP_973759.1
UniGene:At.21743 ProteinModelPortal:Q94AD9 SMR:Q94AD9 PaxDb:Q94AD9
PRIDE:Q94AD9 EnsemblPlants:AT1G04990.1 EnsemblPlants:AT1G04990.2
GeneID:839351 KEGG:ath:AT1G04990 TAIR:At1g04990 eggNOG:NOG290936
InParanoid:Q94AD9 OMA:THQRISP PhylomeDB:Q94AD9
ProtClustDB:CLSN2687681 Genevestigator:Q94AD9 GermOnline:AT1G04990
Uniprot:Q94AD9
Length = 404
Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
Identities = 131/239 (54%), Positives = 167/239 (69%)
Query: 1 MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
M D + V+S+ V+ +S+D IE+A ++K+++ GV + +PYP RPGE DC FY RTG
Sbjct: 5 MSDTQHVQSSLVSIRSSDKIEDAFRKMKVNET----GVEELNPYPDRPGERDCQFYLRTG 60
Query: 61 LCGYGSNCRFNHPAYAAQG-AQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119
LCGYGS+CR+NHP + Q A Y+EELPER GQPDC Y+LKTG CKYG TCKYHHPKDRN
Sbjct: 61 LCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRN 120
Query: 120 GAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGS 179
GA PV FN++GLPMR EK CPYY+RTG+C+FGVACKFHHPQP + G+++ +
Sbjct: 121 GAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVACKFHHPQPDN--------GHST--A 170
Query: 180 MGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYM 238
G S P++ L+YA L S R Q QSY+P++VSPSQG +P GW YM
Sbjct: 171 YGMSSFPAADLRYASGLTMMSTYGT---LPRPQVPQSYVPILVSPSQGFLPPQGWAPYM 226
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 101/263 (38%), Positives = 134/263 (50%)
Query: 170 PLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIV 229
P N + G S P++ L+YA L S R Q QSY+P++VSPSQG +
Sbjct: 161 PQPDNGHSTAYGMSSFPAADLRYASGLTMMSTYGT---LPRPQVPQSYVPILVSPSQGFL 217
Query: 230 PAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDL-GAGAQMHILSASSQNLPERPDQPD 288
P GW YM A SN +Y+ +NQ G+ A M + A ++ L E DQP+
Sbjct: 218 PPQGWAPYM-----------AASNSMYNVKNQPYYSGSSASMAMAVALNRGLSESSDQPE 266
Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 348
CR++MNTGTCKYG DCK+ HP RI+Q S I P LP+RPGQ C N+ YG CKFGP
Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGP 326
Query: 349 TCRFDHPYAGYPINYGXXXXXXXXXXXXXMNHQAISATHSIETSPDASSKIPNWVQNSDA 408
C+FDHP YP HQ IS T + S S+ P+ + S
Sbjct: 327 NCKFDHPMLPYP-GLTMATSLPTPFASPVTTHQRISPTPNRSDSKSLSNGKPDVKKESS- 384
Query: 409 VSVQHQNPDMKNSTTKN-SDDSS 430
+ + PD N ++ S+D+S
Sbjct: 385 ---ETEKPD--NGEVQDLSEDAS 402
Score = 230 (86.0 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 43/90 (47%), Positives = 54/90 (60%)
Query: 278 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERI-AQSAASNIGPLGLPSRPGQAICS 336
+ LPER QPDC Y++ TG CKYG CK+HHPK+R AQ N+ +GLP R G+ C
Sbjct: 85 EELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNGAQPVMFNV--IGLPMRLGEKPCP 142
Query: 337 NYSMYGICKFGPTCRFDHPYA--GYPINYG 364
Y G C+FG C+F HP G+ YG
Sbjct: 143 YYLRTGTCRFGVACKFHHPQPDNGHSTAYG 172
Score = 192 (72.6 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 41/102 (40%), Positives = 52/102 (50%)
Query: 74 AYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSF-NILGLP 132
A A L E + QP+C +++ TGTCKYG CKY HP R P S N LP
Sbjct: 246 ASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLP 305
Query: 133 MRQDEKSCPYYMRTGSCKFGVACKFHHPQ---PS-SLGTALP 170
R + +C + G CKFG CKF HP P ++ T+LP
Sbjct: 306 ARPGQPACGNFRSYGFCKFGPNCKFDHPMLPYPGLTMATSLP 347
Score = 190 (71.9 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 41/117 (35%), Positives = 63/117 (53%)
Query: 243 PLSPTSIAGSNLIYSSRNQGDL-GAGAQMHILSASSQNL---PERPDQPDCRYYMNTGTC 298
P+S T S+L+ S R+ + A +M + + L P+RP + DC++Y+ TG C
Sbjct: 4 PMSDTQHVQSSLV-SIRSSDKIEDAFRKMKVNETGVEELNPYPDRPGERDCQFYLRTGLC 62
Query: 299 KYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 355
YG+ C+++HP + Q A L P R GQ C + G CK+GPTC++ HP
Sbjct: 63 GYGSSCRYNHPTH-LPQDVAYYKEEL--PERIGQPDCEYFLKTGACKYGPTCKYHHP 116
Score = 156 (60.0 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 28/70 (40%), Positives = 39/70 (55%)
Query: 50 EPDCLFYRRTGLCGYGSNCRFNHPAYA-AQGAQYREE---LPERNGQPDCGYYLKTGTCK 105
+P+C F+ TG C YG +C+++HP +Q LP R GQP CG + G CK
Sbjct: 264 QPECRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCK 323
Query: 106 YGSTCKYHHP 115
+G CK+ HP
Sbjct: 324 FGPNCKFDHP 333
>TAIR|locus:2101170 [details] [associations]
symbol:AT3G48440 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:AL049659
HOGENOM:HOG000237733 EMBL:BT033139 IPI:IPI00517303 PIR:T06698
RefSeq:NP_190414.1 UniGene:At.50258 ProteinModelPortal:Q9STM4
SMR:Q9STM4 PaxDb:Q9STM4 PRIDE:Q9STM4 EnsemblPlants:AT3G48440.1
GeneID:824003 KEGG:ath:AT3G48440 TAIR:At3g48440 eggNOG:NOG288127
InParanoid:Q9STM4 OMA:PEWNGYQ PhylomeDB:Q9STM4
ProtClustDB:CLSN2719348 Genevestigator:Q9STM4 GermOnline:AT3G48440
Uniprot:Q9STM4
Length = 448
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 146/367 (39%), Positives = 206/367 (56%)
Query: 4 NRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQA-SPYPARPGEPDCLFYRRTGLC 62
N + SNAV + + EE R + +G ++ + YP RPG DC FY RTG C
Sbjct: 67 NGGLDSNAVVTINQEEEEEEEDR-DGYGYGDGWSENESENVYPVRPGAEDCSFYMRTGSC 125
Query: 63 GYGSNCRFNHPA----YAAQGAQYREELPE--RNGQPDCGYYLKTGTCKYGSTCKYHHPK 116
+GS+C+FNHP A+ + RE+ + + G DC YY +TG CKYG TC+++H
Sbjct: 126 KFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLIDCKYYFRTGGCKYGETCRFNHTI 185
Query: 117 DRNG-AGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLG-TALP-LTG 173
++G A N LGLP+R E CPYYMR GSCK+G CKF+HP P+++G T P G
Sbjct: 186 PKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGAECKFNHPDPTTIGGTDSPSFRG 245
Query: 174 NASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPA-P 232
N + S+G+ P + Q S +WS R + GT ++P+++S + G+ P
Sbjct: 246 NNGV-SIGT-FSPKATFQ--ASSTSWSSPR------HVNGTSPFIPVMLSQTHGVTSQNP 295
Query: 233 GWNTYMGNI-----GPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQP 287
WN Y ++ G SP++ + L+ +S + + H + A + PERPDQP
Sbjct: 296 EWNGYQASVYSSERGVFSPST---TYLMNNSSAETSMLLSQYRHQMPA--EEFPERPDQP 350
Query: 288 DCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFG 347
+C YYM TG CK+ +CK+HHPK R+ + + GLP RP Q IC+ YS YGICKFG
Sbjct: 351 ECSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNICTYYSRYGICKFG 410
Query: 348 PTCRFDH 354
P CRFDH
Sbjct: 411 PACRFDH 417
Score = 191 (72.3 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 34/70 (48%), Positives = 43/70 (61%)
Query: 288 DCRYYMNTGTCKYGADCKFHH--PKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICK 345
DC+YY TG CKYG C+F+H PK +A + N LGLP RPG+ C Y G CK
Sbjct: 163 DCKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNF--LGLPLRPGEVECPYYMRNGSCK 220
Query: 346 FGPTCRFDHP 355
+G C+F+HP
Sbjct: 221 YGAECKFNHP 230
>TAIR|locus:2081066 [details] [associations]
symbol:AT3G06410 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:AC011623
eggNOG:NOG312935 HOGENOM:HOG000237733 EMBL:AK230312 EMBL:AK230438
IPI:IPI00535086 RefSeq:NP_187292.2 UniGene:At.27771
ProteinModelPortal:Q9SQU4 SMR:Q9SQU4 EnsemblPlants:AT3G06410.1
GeneID:819815 KEGG:ath:AT3G06410 TAIR:At3g06410 InParanoid:Q9SQU4
OMA:SSQQYGL PhylomeDB:Q9SQU4 ProtClustDB:CLSN2681554
Genevestigator:Q9SQU4 GermOnline:AT3G06410 Uniprot:Q9SQU4
Length = 462
Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
Identities = 129/354 (36%), Positives = 186/354 (52%)
Query: 20 IEEAIWRLKIHDNQEGGGVAQASPY-PARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQ 78
+E +WRL + GGG ++ P P P L G G A
Sbjct: 29 VEAPMWRLGLSGGGGGGGGGESYPERPDEPDCIYYLRTGVCGY-GSRCRFNHPRDRGAVI 87
Query: 79 GAQYREE--LPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAG---PVSFNILGLPM 133
G E LPER G P C ++++TGTCK+G++CKYHHP+ G G PVS + LG P+
Sbjct: 88 GGVRGEAGALPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYPL 147
Query: 134 RQDEKSCPYYMRTGSCKFGVACKFHHPQPSSL-GTAL-PLTGNASLGSMGSSVLPSSGLQ 191
R EK C YY+RTG CKFG+ C+F+HP P ++ G P ++ P+ Q
Sbjct: 148 RPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQPQLQTIYPTLQSQ 207
Query: 192 YAGSLPTWSL--QRAPYLS-SRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPL-SPT 247
S + L R +L+ S LQ Y P +V P G+VP GWN Y ++ + SP
Sbjct: 208 SIPSSQQYGLVLTRPSFLTGSYLQSP--YGPPMVLPP-GMVPYSGWNPYQASLSAMPSPG 264
Query: 248 S--IAGSNLIY-----SSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKY 300
+ GS+ IY S G + +++S+ P+RPDQP+C+Y+M TG CK+
Sbjct: 265 TQPSIGSSSIYGLTPLSPSATAYTGTYQSVPSSNSTSKEFPQRPDQPECQYFMRTGDCKF 324
Query: 301 GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 354
G+ C++HHP + + + +GLP RPG A C++++ +GICKFGP C+FDH
Sbjct: 325 GSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDH 378
Score = 225 (84.3 bits), Expect = 6.6e-16, P = 6.6e-16
Identities = 50/135 (37%), Positives = 72/135 (53%)
Query: 84 EELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGP-VSFNILGLPMRQDEKSCPY 142
+E P+R QP+C Y+++TG CK+GS+C+YHHP D + + +GLP+R C +
Sbjct: 302 KEFPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTH 361
Query: 143 YMRTGSCKFGVACKFHHPQPSSLG---TALPLTGN-ASLGSMGSSVLPSSGLQYAGSLPT 198
+ + G CKFG ACKF H SSL +A LT + +GSS L S + S
Sbjct: 362 FAQHGICKFGPACKFDHSMSSSLSYSPSASSLTDMPVAPYPIGSSSLSGSSAPVSSSNEP 421
Query: 199 WSLQRAPYLSSRLQG 213
P +SS + G
Sbjct: 422 TKEAVTPAVSSMVSG 436
Score = 222 (83.2 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 39/78 (50%), Positives = 52/78 (66%)
Query: 280 LPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAAS--NIGPLGLPSRPGQAICSN 337
LPER P C+++M TGTCK+GA CK+HHP++ + + ++ LG P RPG+ CS
Sbjct: 97 LPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYPLRPGEKECSY 156
Query: 338 YSMYGICKFGPTCRFDHP 355
Y G CKFG TCRF+HP
Sbjct: 157 YLRTGQCKFGLTCRFNHP 174
Score = 220 (82.5 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 37/82 (45%), Positives = 52/82 (63%)
Query: 278 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLG-LPSRPGQAICS 336
++ PERPD+PDC YY+ TG C YG+ C+F+HP++R A G G LP R G +C
Sbjct: 49 ESYPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAVIGGVR-GEAGALPERMGHPVCQ 107
Query: 337 NYSMYGICKFGPTCRFDHPYAG 358
++ G CKFG +C++ HP G
Sbjct: 108 HFMRTGTCKFGASCKYHHPRQG 129
Score = 123 (48.4 bits), Expect = 0.00016, P = 0.00016
Identities = 40/131 (30%), Positives = 59/131 (45%)
Query: 132 PMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPS-SGL 190
P R D+ C Y+MRTG CKFG +C++HHP + P TG L S+G + P +
Sbjct: 305 PQRPDQPECQYFMRTGDCKFGSSCRYHHP----VDAVPPKTGIV-LSSIGLPLRPGVAQC 359
Query: 191 QYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIA 250
+ A + + SY P S + V AP Y P+ +S++
Sbjct: 360 THFAQHGICKFGPACKFDHSMSSSLSYSPSASSLTDMPV-AP----Y-----PIGSSSLS 409
Query: 251 GSNLIYSSRNQ 261
GS+ SS N+
Sbjct: 410 GSSAPVSSSNE 420
>TAIR|locus:2087775 [details] [associations]
symbol:HUA1 "ENHANCER OF AG-4 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA;TAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 GO:GO:0003723 GO:GO:0009908
EMBL:AB024033 GO:GO:0001709 EMBL:AY024357 EMBL:AC069474
EMBL:AK229145 IPI:IPI00536814 RefSeq:NP_187874.2 UniGene:At.5670
ProteinModelPortal:Q941Q3 SMR:Q941Q3 STRING:Q941Q3 PaxDb:Q941Q3
PRIDE:Q941Q3 EnsemblPlants:AT3G12680.1 GeneID:820448
KEGG:ath:AT3G12680 TAIR:At3g12680 eggNOG:NOG250655
HOGENOM:HOG000078745 InParanoid:Q941Q3 OMA:LGAHNTI PhylomeDB:Q941Q3
ProtClustDB:CLSN2690537 Genevestigator:Q941Q3 Uniprot:Q941Q3
Length = 524
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 124/347 (35%), Positives = 173/347 (49%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGA--QYRE-------ELPERNGQPD 94
YP R GE DC Y +T C +G +CRF+HP + +G ++E E PER G+PD
Sbjct: 171 YPQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEYPERPGEPD 230
Query: 95 CGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVA 154
C YY+KT CKYGS CK++HP++ + + LP R E C +YM+TG CKFG++
Sbjct: 231 CPYYIKTQRCKYGSKCKFNHPREEAAVSVETQD--SLPERPSEPMCTFYMKTGKCKFGLS 288
Query: 155 CKFHHPQ----PSS---LGTALPLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQ-RAP- 205
CKFHHP+ PSS +G+++ LT + + + LP S + P
Sbjct: 289 CKFHHPKDIQLPSSSQDIGSSVGLTSEPDATNNPHVTFTPALYHNSKGLPVRSGEVDCPF 348
Query: 206 YL---SSRLQGTQSYMPLIVSPSQ-GIVP-APGWNTYM--GNIGPLSPTSIAGSNLIYSS 258
YL S + T Y P + +P A G N + N L+ + + Y +
Sbjct: 349 YLKTGSCKYGATCRYN----HPERTAFIPQAAGVNYSLVSSNTANLNLGLVTPATSFYQT 404
Query: 259 RNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIA---- 314
Q LG ++SA+ P+RP Q +C YYM TG CK+G CKFHHP +R++
Sbjct: 405 LTQPTLG------VISAT---YPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTK 455
Query: 315 ---QSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 358
Q + G P R G C Y G CK+G TC+FDHP G
Sbjct: 456 QAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPPPG 502
Score = 247 (92.0 bits), Expect = 2.9e-18, P = 2.9e-18
Identities = 42/87 (48%), Positives = 55/87 (63%)
Query: 87 PERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA----GP----VSFNILGLPMRQDEK 138
P+R GQ +C YY+KTG CK+G CK+HHP DR A P V ++ G P R+
Sbjct: 418 PQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGAL 477
Query: 139 SCPYYMRTGSCKFGVACKFHHPQPSSL 165
+CPYYM+TG+CK+G CKF HP P +
Sbjct: 478 NCPYYMKTGTCKYGATCKFDHPPPGEV 504
Score = 209 (78.6 bits), Expect = 5.8e-14, P = 5.8e-14
Identities = 41/90 (45%), Positives = 54/90 (60%)
Query: 37 GVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA--------YAAQGAQYREEL-- 86
GV A+ YP RPG+ +C +Y +TG C +G C+F+HPA A Q + L
Sbjct: 411 GVISAT-YPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAG 469
Query: 87 -PERNGQPDCGYYLKTGTCKYGSTCKYHHP 115
P R G +C YY+KTGTCKYG+TCK+ HP
Sbjct: 470 YPRREGALNCPYYMKTGTCKYGATCKFDHP 499
>TAIR|locus:2171407 [details] [associations]
symbol:ZFN3 "zinc finger nuclease 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0004518 "nuclease activity" evidence=TAS]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AB005242 GO:GO:0004518
HOGENOM:HOG000237733 EMBL:AF138872 EMBL:AY084634 EMBL:AY128342
EMBL:BT000014 EMBL:BX831982 IPI:IPI00516322 IPI:IPI00528450
IPI:IPI00528912 RefSeq:NP_568332.2 RefSeq:NP_851041.1
RefSeq:NP_974790.1 UniGene:At.21711 ProteinModelPortal:Q8L7N8
SMR:Q8L7N8 EnsemblPlants:AT5G16540.1 GeneID:831516
KEGG:ath:AT5G16540 GeneFarm:4900 TAIR:At5g16540 eggNOG:NOG281021
InParanoid:Q8L7N8 OMA:SAGNQGM PhylomeDB:Q8L7N8
ProtClustDB:CLSN2690167 Genevestigator:Q8L7N8 Uniprot:Q8L7N8
Length = 375
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 120/316 (37%), Positives = 163/316 (51%)
Query: 21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
+ A+W++ + + G S YP R GEPDC +Y RTGLC +GS CRFNHP
Sbjct: 19 QNAMWQMNLGSDDTMG--VDGS-YPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVI 75
Query: 78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGLPMRQD 136
A+ + E PER GQP+C +YLKTGTCK+G TCK+HHP+++ G G VS N+L P+R +
Sbjct: 76 ATARIKGEYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPN 135
Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL 196
E C Y++R G CKFG CKF+HPQ S N + GS V S LQ
Sbjct: 136 EDDCSYFLRIGQCKFGGTCKFNHPQTQST--------NLMVSVRGSPVY--SALQSLTGQ 185
Query: 197 PTWSLQRAPYLSS--RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNL 254
P++S R ++++ RLQ + S SQG + + G+++ GN PL ++ N+
Sbjct: 186 PSYSWSRTSFVANPPRLQDPSGF----ASGSQGGLFSSGFHS--GNSVPLGFYALPRENV 239
Query: 255 IYSSRNQ---------GD--LGAGAQMHI----------LSASSQNLPERPDQPDCRYYM 293
Q GD G + H SS LP RP +P C +Y
Sbjct: 240 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYS 299
Query: 294 NTGTCKYGADCKFHHP 309
G CK+G CKF HP
Sbjct: 300 RYGICKFGPSCKFDHP 315
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 105/292 (35%), Positives = 158/292 (54%)
Query: 87 PERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILG-LPMRQDEKSCPYYMR 145
PER+G+PDC YY++TG C++GSTC+++HP DR + I G P R + C +Y++
Sbjct: 40 PERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVIATA-RIKGEYPERIGQPECEFYLK 98
Query: 146 TGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSG-LQY---AGSLP---T 198
TG+CKFGV CKFHHP+ + G + G+ S+ + + P+ Y G T
Sbjct: 99 TGTCKFGVTCKFHHPR-NKAG----IDGSVSVNVLSYPLRPNEDDCSYFLRIGQCKFGGT 153
Query: 199 WSLQRAPYLSSRLQGTQSYMPLIVSPSQGIV--PAPGWN--TYMGNIGPLS-PTSIAGSN 253
S+ L + P + S Q + P+ W+ +++ N L P+ A +
Sbjct: 154 CKFNHPQTQSTNLMVSVRGSP-VYSALQSLTGQPSYSWSRTSFVANPPRLQDPSGFASGS 212
Query: 254 L--IYSSRNQGDLGAGAQMHILSASSQNL-PERPDQPDCRYYMNTGTCKYGADCKFHHPK 310
++SS G + + +N+ PERP QP+C++YM TG CK+G CKFHHP+
Sbjct: 213 QGGLFSSGFHS--GNSVPLGFYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPR 270
Query: 311 ERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPIN 362
+R + +GLP RPG+ +C YS YGICKFGP+C+FDHP + N
Sbjct: 271 DRQTPPPDCVLSSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMRVFTYN 322
>TAIR|locus:1006230718 [details] [associations]
symbol:AT1G48195 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AC023673 EMBL:BX818039 IPI:IPI00522286
RefSeq:NP_973988.1 UniGene:At.38465 UniGene:At.63148
ProteinModelPortal:Q3ECU8 SMR:Q3ECU8 EnsemblPlants:AT1G48195.1
GeneID:2745816 KEGG:ath:AT1G48195 TAIR:At1g48195 eggNOG:NOG304278
HOGENOM:HOG000107451 InParanoid:Q3ECU8 OMA:AICPHYS PhylomeDB:Q3ECU8
ProtClustDB:CLSN2681286 Genevestigator:Q3ECU8 Uniprot:Q3ECU8
Length = 82
Score = 251 (93.4 bits), Expect = 5.4e-21, P = 5.4e-21
Identities = 40/79 (50%), Positives = 51/79 (64%)
Query: 276 SSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAIC 335
S + PERP +P+C YY+ TG C +CK+HHPK + GLP RPGQAIC
Sbjct: 2 SEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAIC 61
Query: 336 SNYSMYGICKFGPTCRFDH 354
+YS +GIC+ GPTC+FDH
Sbjct: 62 PHYSRFGICRSGPTCKFDH 80
Score = 217 (81.4 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 37/77 (48%), Positives = 48/77 (62%)
Query: 84 EELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGP-VSFNILGLPMRQDEKSCPY 142
E+ PER G+P+C YYL+TG C CKYHHPK+ + P + N GLP+R + CP+
Sbjct: 4 EKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPH 63
Query: 143 YMRTGSCKFGVACKFHH 159
Y R G C+ G CKF H
Sbjct: 64 YSRFGICRSGPTCKFDH 80
Score = 164 (62.8 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 31/75 (41%), Positives = 42/75 (56%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAA----QGAQYREELPERNGQPDCGYYL 99
+P RPGEP+C +Y RTG C NC+++HP Q + LP R GQ C +Y
Sbjct: 6 FPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPHYS 65
Query: 100 KTGTCKYGSTCKYHH 114
+ G C+ G TCK+ H
Sbjct: 66 RFGICRSGPTCKFDH 80
Score = 95 (38.5 bits), Expect = 0.00059, P = 0.00059
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 132 PMRQDEKSCPYYMRTGSCKFGVACKFHHPQ 161
P R E C YY+RTG+C CK+HHP+
Sbjct: 7 PERPGEPECSYYLRTGNCYLKQNCKYHHPK 36
>TAIR|locus:2013763 [details] [associations]
symbol:AT1G29570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0048445 "carpel morphogenesis" evidence=RCA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AC068667 IPI:IPI00519526 PIR:G86418
RefSeq:NP_174250.1 UniGene:At.51822 EnsemblPlants:AT1G29570.1
GeneID:839834 KEGG:ath:AT1G29570 TAIR:At1g29570 eggNOG:NOG325481
HOGENOM:HOG000107458 OMA:HIMDRNV PhylomeDB:Q9C7P4
ProtClustDB:CLSN2914472 Genevestigator:Q9C7P4 Uniprot:Q9C7P4
Length = 321
Score = 148 (57.2 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 40 QASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYR--EELPERN 90
Q+SPYP RPG+ DC FY + GLC Y S+CRFNHP Q R + + +RN
Sbjct: 48 QSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKHIMDRN 100
>TAIR|locus:2013758 [details] [associations]
symbol:AT1G29560 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0008270 GO:GO:0003676
EMBL:AC068667 eggNOG:KOG1677 IPI:IPI00527997 RefSeq:NP_174249.2
UniGene:At.73942 ProteinModelPortal:B3H4U9 PRIDE:B3H4U9
EnsemblPlants:AT1G29560.1 GeneID:839833 KEGG:ath:AT1G29560
TAIR:At1g29560 HOGENOM:HOG000064587 OMA:WRDSESR PhylomeDB:B3H4U9
ProtClustDB:CLSN2682005 Genevestigator:B3H4U9 Uniprot:B3H4U9
Length = 572
Score = 142 (55.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 35/84 (41%), Positives = 46/84 (54%)
Query: 45 PAR-PGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGT 103
P R PGE +C R C G +CR+NHP Q +ELP RN C Y+L+ G
Sbjct: 215 PVRWPGE-ECWCLR----CRNGGSCRYNHPT------QLPQELPVRNRLQICRYFLR-GY 262
Query: 104 CKYGSTCKYHHPKDRNGAGPVSFN 127
CK+GS C + H +DR+ A P+ N
Sbjct: 263 CKFGSVCGFQHIRDRDVAEPMYEN 286
>ZFIN|ZDB-GENE-990806-20 [details] [associations]
symbol:cth1 "cth1" species:7955 "Danio rerio"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 ZFIN:ZDB-GENE-990806-20 GO:GO:0008270
GO:GO:0003676 HSSP:P22893 GeneTree:ENSGT00530000063262
EMBL:AL954709 EMBL:BC107984 EMBL:AJ249490 IPI:IPI00509714
RefSeq:NP_571014.1 UniGene:Dr.621 SMR:Q9PU62 STRING:Q9PU62
Ensembl:ENSDART00000101601 GeneID:30114 KEGG:dre:30114 CTD:30114
HOGENOM:HOG000153347 HOVERGEN:HBG078993 InParanoid:Q9PU62 KO:K13056
OMA:FTFSSQH NextBio:20806593 Uniprot:Q9PU62
Length = 319
Score = 116 (45.9 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 37/136 (27%), Positives = 48/136 (35%)
Query: 270 MHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPS- 328
+H L P R + P CR + G C +G C F H + A PS
Sbjct: 121 VHNLKEQRPIRPRRRNVP-CRTFRAFGVCPFGNRCHFLHVEGGSESDGAEEEQTWQPPSQ 179
Query: 329 ----RPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGXXXXXXXXXXXXXMNHQAIS 384
+P A+C +S +G C +G CRF H G P N +IS
Sbjct: 180 SQEWKPRGALCRTFSAFGFCLYGTRCRFQH---GLPNTIKGHNANHTSWPQQMTNGGSIS 236
Query: 385 ATHSIETSPDASSKIP 400
TSP S P
Sbjct: 237 PISDTCTSPSPPSSSP 252
Score = 114 (45.2 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 38/155 (24%), Positives = 59/155 (38%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C Y G C YG+ C F H + R P R P C + G C +G+ C +
Sbjct: 103 CRTYHTAGYCVYGTRCLFVHNL-----KEQRPIRPRRRNVP-CRTFRAFGVCPFGNRCHF 156
Query: 113 HHPKDRNGAGPVSFNILGLPMRQDEK------SCPYYMRTGSCKFGVACKFHHPQPSSL- 165
H + + + P Q ++ C + G C +G C+F H P+++
Sbjct: 157 LHVEGGSESDGAEEEQTWQPPSQSQEWKPRGALCRTFSAFGFCLYGTRCRFQHGLPNTIK 216
Query: 166 GTALPLTGNASLGSMGSSVLPSSGLQYAGSLPTWS 200
G T + G S+ P S + S P+ S
Sbjct: 217 GHNANHTSWPQQMTNGGSISPISDTCTSPSPPSSS 251
Score = 61 (26.5 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 134 RQDEKSCPYYMRTGSCKFGVACKFHH 159
R + C Y TG+CK+ C+F H
Sbjct: 59 RYKTELCSRYAETGTCKYAERCQFAH 84
Score = 51 (23.0 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 223 SPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDL 264
SP+ + P+P + G I P S ++A + +SS++ DL
Sbjct: 251 SPTSAL-PSPVYPDSSGPITPPSVEAVANNAFTFSSQHLNDL 291
>RGD|1310618 [details] [associations]
symbol:Mkrn2 "makorin, ring finger protein, 2" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 RGD:1310618
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0005622 Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 GeneTree:ENSGT00390000014093
HOVERGEN:HBG066965 CTD:23609 OrthoDB:EOG4229K2 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:BC083870 IPI:IPI00372043
RefSeq:NP_001008315.1 UniGene:Rn.129070 Ensembl:ENSRNOT00000013146
GeneID:297525 KEGG:rno:297525 UCSC:RGD:1310618 InParanoid:Q5XI23
NextBio:642384 Genevestigator:Q5XI23 Uniprot:Q5XI23
Length = 417
Score = 88 (36.0 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 23/70 (32%), Positives = 30/70 (42%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C ++ G+C GS C F+H +L C YY K G C YG+ C+Y
Sbjct: 8 CRYFMH-GVCREGSQCLFSH------------DLANSKPSTICKYYQK-GYCAYGARCRY 53
Query: 113 HHPKDRNGAG 122
H K AG
Sbjct: 54 DHTKPPAAAG 63
Score = 63 (27.2 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 289 CRYY-MNTGTCKYGADCKFHH--PKERIAQ 315
C+Y+ GTC +G+ C + H P R+A+
Sbjct: 328 CKYFEQGKGTCPFGSKCLYRHAYPDGRLAE 357
Score = 60 (26.2 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 136 DEKSCPYYMRTGSCKFGVACKFHH 159
+++ CPY G C+FG AC + H
Sbjct: 168 EQQLCPY-AAAGECRFGDACVYLH 190
Score = 49 (22.3 bits), Expect = 0.00084, Sum P(3) = 0.00084
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 331 GQAICSNYSM-YGICKFGPTCRFDHPY 356
G+ C + G C FG C + H Y
Sbjct: 324 GKKACKYFEQGKGTCPFGSKCLYRHAY 350
>MGI|MGI:1928482 [details] [associations]
symbol:Mbnl1 "muscleblind-like 1 (Drosophila)" species:10090
"Mus musculus" [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO;IMP] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0006376 "mRNA splice site
selection" evidence=IMP] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007519 "skeletal muscle tissue development"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0043484 "regulation of RNA
splicing" evidence=ISO] [GO:0045445 "myoblast differentiation"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
MGI:MGI:1928482 GO:GO:0005634 GO:GO:0007399 GO:GO:0046872
GO:GO:0008270 GO:GO:0001701 GO:GO:0030326 GO:GO:0003725
GO:GO:0045445 GO:GO:0010494 GO:GO:0007519 GO:GO:0000380
GO:GO:0006376 GO:GO:0000381 eggNOG:NOG241142 KO:K14943 CTD:4154
HOVERGEN:HBG006999 HOGENOM:HOG000230928 EMBL:AF231110
IPI:IPI00466710 RefSeq:NP_001240637.1 UniGene:Mm.255723
ProteinModelPortal:Q9JKP5 SMR:Q9JKP5 STRING:Q9JKP5
PhosphoSite:Q9JKP5 PaxDb:Q9JKP5 PRIDE:Q9JKP5 GeneID:56758
KEGG:mmu:56758 UCSC:uc008pjh.1 CleanEx:MM_MBNL1
Genevestigator:Q9JKP5 GermOnline:ENSMUSG00000027763 Uniprot:Q9JKP5
Length = 341
Score = 115 (45.5 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 56/208 (26%), Positives = 86/208 (41%)
Query: 155 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 213
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 66 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 119
Query: 214 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 271
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 120 --------VAPSLATSASAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA--- 168
Query: 272 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 329
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 169 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT-------- 216
Query: 330 PGQAICSNYSMYGICKFGPTCRFDHPYA 357
+C +Y + G C C++ HP A
Sbjct: 217 --VTVCMDY-IKGRCS-REKCKYFHPPA 240
Score = 52 (23.4 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 53 CLFYRRTGLCGY-GSNCRFNHPAYAAQGAQYREELPERNGQP-DCGYYLKTGTCKYGSTC 110
C ++R G C + C+F HP+ + Q NG+ C LK G C C
Sbjct: 19 CREFQR-GTCSRPDTECKFAHPSKSCQ---------VENGRVIACFDSLK-GRCSR-ENC 66
Query: 111 KYHHP 115
KY HP
Sbjct: 67 KYLHP 71
>UNIPROTKB|Q9H000 [details] [associations]
symbol:MKRN2 "Probable E3 ubiquitin-protein ligase
makorin-2" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0005622 "intracellular"
evidence=IDA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 UniPathway:UPA00143
Prosite:PS00518 EMBL:CH471055 GO:GO:0046872 GO:GO:0016874
GO:GO:0008270 GO:GO:0003676 GO:GO:0016567 GO:GO:0005622
Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 HOVERGEN:HBG066965 CTD:23609
OrthoDB:EOG4229K2 InterPro:IPR026293 PANTHER:PTHR11224:SF17
EMBL:AF302084 EMBL:AF277170 EMBL:AF277164 EMBL:AF277165
EMBL:AF277166 EMBL:AF277167 EMBL:AF277168 EMBL:AF277169
EMBL:AF161555 EMBL:AK091318 EMBL:AC018500 EMBL:BC001799
EMBL:BC015715 EMBL:AL834512 IPI:IPI00396406 RefSeq:NP_054879.3
UniGene:Hs.591666 ProteinModelPortal:Q9H000 SMR:Q9H000
IntAct:Q9H000 STRING:Q9H000 PhosphoSite:Q9H000 DMDM:45645205
PRIDE:Q9H000 DNASU:23609 Ensembl:ENST00000170447 GeneID:23609
KEGG:hsa:23609 UCSC:uc003bxd.3 GeneCards:GC03P012598 HGNC:HGNC:7113
HPA:HPA037559 HPA:HPA037560 MIM:608426 neXtProt:NX_Q9H000
PharmGKB:PA30832 InParanoid:Q9H000 OMA:KGYCAYG ChiTaRS:MKRN2
GenomeRNAi:23609 NextBio:46312 ArrayExpress:Q9H000 Bgee:Q9H000
CleanEx:HS_MKRN2 Genevestigator:Q9H000 GermOnline:ENSG00000075975
Uniprot:Q9H000
Length = 416
Score = 86 (35.3 bits), Expect = 5.8e-05, Sum P(3) = 5.8e-05
Identities = 22/70 (31%), Positives = 30/70 (42%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C ++ G+C GS C F+H +L C YY K G C YG+ C+Y
Sbjct: 8 CRYFMH-GVCREGSQCLFSH------------DLANSKPSTICKYYQK-GYCAYGTRCRY 53
Query: 113 HHPKDRNGAG 122
H + AG
Sbjct: 54 DHTRPSAAAG 63
Score = 63 (27.2 bits), Expect = 5.8e-05, Sum P(3) = 5.8e-05
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 289 CRYY-MNTGTCKYGADCKFHH--PKERIAQ 315
C+Y+ GTC +G+ C + H P R+A+
Sbjct: 327 CKYFEQGKGTCPFGSKCLYRHAYPDGRLAE 356
Score = 60 (26.2 bits), Expect = 5.8e-05, Sum P(3) = 5.8e-05
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 136 DEKSCPYYMRTGSCKFGVACKFHH 159
+++ CPY G C+FG AC + H
Sbjct: 167 EQQLCPY-AAAGECRFGDACVYLH 189
>UNIPROTKB|F1M3I4 [details] [associations]
symbol:Mkrn2 "Protein Mkrn2" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 RGD:1310618
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
InterPro:IPR026290 PANTHER:PTHR11224 InterPro:IPR026293
PANTHER:PTHR11224:SF17 IPI:IPI00566412 Ensembl:ENSRNOT00000044916
ArrayExpress:F1M3I4 Uniprot:F1M3I4
Length = 417
Score = 86 (35.3 bits), Expect = 5.9e-05, Sum P(3) = 5.9e-05
Identities = 23/67 (34%), Positives = 28/67 (41%)
Query: 56 YRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHP 115
Y G+C GS C F+H +L C YY K G C YG+ C+Y H
Sbjct: 10 YFMHGVCREGSQCLFSH------------DLANSKPSTICKYYQK-GYCAYGARCRYDHT 56
Query: 116 KDRNGAG 122
K AG
Sbjct: 57 KPPAAAG 63
Score = 63 (27.2 bits), Expect = 5.9e-05, Sum P(3) = 5.9e-05
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 289 CRYY-MNTGTCKYGADCKFHH--PKERIAQ 315
C+Y+ GTC +G+ C + H P R+A+
Sbjct: 328 CKYFEQGKGTCPFGSKCLYRHAYPDGRLAE 357
Score = 60 (26.2 bits), Expect = 5.9e-05, Sum P(3) = 5.9e-05
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 136 DEKSCPYYMRTGSCKFGVACKFHH 159
+++ CPY G C+FG AC + H
Sbjct: 168 EQQLCPY-AAAGECRFGDACVYLH 190
>UNIPROTKB|E2QSA8 [details] [associations]
symbol:MBNL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 KO:K14943 CTD:4154 RefSeq:XP_866180.2
Ensembl:ENSCAFT00000013668 GeneID:477116 KEGG:cfa:477116
NextBio:20852652 Uniprot:E2QSA8
Length = 341
Score = 114 (45.2 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 56/208 (26%), Positives = 86/208 (41%)
Query: 155 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 213
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 66 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 119
Query: 214 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 271
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 120 --------VAPSLATNASAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA--- 168
Query: 272 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 329
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 169 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT-------- 216
Query: 330 PGQAICSNYSMYGICKFGPTCRFDHPYA 357
+C +Y + G C C++ HP A
Sbjct: 217 --VTVCMDY-IKGRCS-REKCKYFHPPA 240
Score = 52 (23.4 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 53 CLFYRRTGLCGY-GSNCRFNHPAYAAQGAQYREELPERNGQP-DCGYYLKTGTCKYGSTC 110
C ++R G C + C+F HP+ + Q NG+ C LK G C C
Sbjct: 19 CREFQR-GTCSRPDTECKFAHPSKSCQ---------VENGRVIACFDSLK-GRCSR-ENC 66
Query: 111 KYHHP 115
KY HP
Sbjct: 67 KYLHP 71
>UNIPROTKB|Q5ZKW9 [details] [associations]
symbol:MBNL1 "Muscleblind-like protein 1" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 GO:GO:0003723 eggNOG:NOG241142
GeneTree:ENSGT00390000001586 KO:K14943 EMBL:AJ719965
IPI:IPI00587570 RefSeq:NP_001026493.1 UniGene:Gga.4840
ProteinModelPortal:Q5ZKW9 SMR:Q5ZKW9 STRING:Q5ZKW9
Ensembl:ENSGALT00000016870 GeneID:425033 KEGG:gga:425033 CTD:4154
HOVERGEN:HBG006999 OrthoDB:EOG4BRWN5 NextBio:20827282
ArrayExpress:Q5ZKW9 Uniprot:Q5ZKW9
Length = 369
Score = 115 (45.5 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 58/208 (27%), Positives = 89/208 (42%)
Query: 155 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 213
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 66 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 119
Query: 214 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 271
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 120 --------VAPSLATNASAAFNPYLGPVSPGLVPAEILPTAPMLVAGNPGVPVPAAA--- 168
Query: 272 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 329
+A++Q L R D+ + CR Y G C G DC+F HP A SA + +
Sbjct: 169 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHP----ADSAMIDTNDNTV--- 217
Query: 330 PGQAICSNYSMYGICKFGPTCRFDHPYA 357
+C +Y + G C C++ HP A
Sbjct: 218 ---TVCMDY-IKGRCS-REKCKYFHPPA 240
Score = 52 (23.4 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 53 CLFYRRTGLCGY-GSNCRFNHPAYAAQGAQYREELPERNGQP-DCGYYLKTGTCKYGSTC 110
C ++R G C + C+F HP+ + Q NG+ C LK G C C
Sbjct: 19 CREFQR-GTCSRPDTECKFAHPSKSCQ---------VENGRVIACFDSLK-GRCSR-ENC 66
Query: 111 KYHHP 115
KY HP
Sbjct: 67 KYLHP 71
>MGI|MGI:1914277 [details] [associations]
symbol:Mkrn2 "makorin, ring finger protein, 2" species:10090
"Mus musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=ISO;ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 UniPathway:UPA00143
MGI:MGI:1914277 Prosite:PS00518 GO:GO:0046872 GO:GO:0016874
GO:GO:0008270 GO:GO:0003676 GO:GO:0016567 GO:GO:0005622
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:CH466523 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 GeneTree:ENSGT00390000014093
HOVERGEN:HBG066965 CTD:23609 OrthoDB:EOG4229K2 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:AF277171 EMBL:AK011295
EMBL:AK077926 EMBL:BC025547 IPI:IPI00620251 RefSeq:NP_075779.2
UniGene:Mm.101316 ProteinModelPortal:Q9ERV1 SMR:Q9ERV1
PhosphoSite:Q9ERV1 PRIDE:Q9ERV1 Ensembl:ENSMUST00000000449
GeneID:67027 KEGG:mmu:67027 InParanoid:Q6GTY9 NextBio:323348
Bgee:Q9ERV1 CleanEx:MM_MKRN2 Genevestigator:Q9ERV1
GermOnline:ENSMUSG00000000439 Uniprot:Q9ERV1
Length = 416
Score = 88 (36.0 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 23/70 (32%), Positives = 30/70 (42%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C ++ G+C GS C F+H +L C YY K G C YG+ C+Y
Sbjct: 8 CRYFMH-GVCREGSQCLFSH------------DLANSKPSTICKYYQK-GYCAYGARCRY 53
Query: 113 HHPKDRNGAG 122
H K AG
Sbjct: 54 DHTKPPAAAG 63
Score = 63 (27.2 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 289 CRYY-MNTGTCKYGADCKFHH--PKERIAQ 315
C+Y+ GTC +G+ C + H P R+A+
Sbjct: 327 CKYFEQGKGTCPFGSKCLYRHAYPDGRLAE 356
Score = 57 (25.1 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 140 CPYYMRTGSCKFGVACKFHH 159
CPY G C+FG AC + H
Sbjct: 171 CPY-AAAGECRFGDACVYLH 189
>UNIPROTKB|F1NBC8 [details] [associations]
symbol:MBNL1 "Muscleblind-like protein 1" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0007519
"skeletal muscle tissue development" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] InterPro:IPR000571
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 GO:GO:0008270
GO:GO:0003725 GO:GO:0010494 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00390000001586 OMA:QQQAAFI EMBL:AADN02021113
EMBL:AADN02021114 EMBL:AADN02021115 EMBL:AADN02021116
IPI:IPI00944391 Ensembl:ENSGALT00000016871 ArrayExpress:F1NBC8
Uniprot:F1NBC8
Length = 384
Score = 115 (45.5 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 58/208 (27%), Positives = 89/208 (42%)
Query: 155 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 213
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 69 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 122
Query: 214 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 271
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 123 --------VAPSLATNASAAFNPYLGPVSPGLVPAEILPTAPMLVAGNPGVPVPAAA--- 171
Query: 272 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 329
+A++Q L R D+ + CR Y G C G DC+F HP A SA + +
Sbjct: 172 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHP----ADSAMIDTNDNTV--- 220
Query: 330 PGQAICSNYSMYGICKFGPTCRFDHPYA 357
+C +Y + G C C++ HP A
Sbjct: 221 ---TVCMDY-IKGRCS-REKCKYFHPPA 243
Score = 52 (23.4 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 53 CLFYRRTGLCGY-GSNCRFNHPAYAAQGAQYREELPERNGQP-DCGYYLKTGTCKYGSTC 110
C ++R G C + C+F HP+ + Q NG+ C LK G C C
Sbjct: 22 CREFQR-GTCSRPDTECKFAHPSKSCQ---------VENGRVIACFDSLK-GRCSR-ENC 69
Query: 111 KYHHP 115
KY HP
Sbjct: 70 KYLHP 74
>WB|WBGene00013319 [details] [associations]
symbol:ccch-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0009792 EMBL:Z99281 GO:GO:0008270 GO:GO:0000003
GO:GO:0003676 eggNOG:COG5063 GeneTree:ENSGT00530000063262
PIR:T27239 RefSeq:NP_502805.1 ProteinModelPortal:O18251 SMR:O18251
STRING:O18251 EnsemblMetazoa:Y57G11C.25 GeneID:178412
KEGG:cel:CELE_Y57G11C.25 UCSC:Y57G11C.25 CTD:178412
WormBase:Y57G11C.25 HOGENOM:HOG000114059 InParanoid:O18251
NextBio:901036 Uniprot:O18251
Length = 199
Score = 118 (46.6 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 348
C+ + T C YG CKF H E + Q N+G + P +C N+S G CK+G
Sbjct: 74 CKTFQLTKACSYGEQCKFAHSVEEL-QLKHQNLG-INNPKYK-TVLCDNFSTTGHCKYGT 130
Query: 349 TCRFDH 354
C+F H
Sbjct: 131 KCQFIH 136
>UNIPROTKB|G3X6F9 [details] [associations]
symbol:MBNL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0007519 "skeletal muscle tissue development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 GO:GO:0008270 GO:GO:0003725
GO:GO:0010494 GO:GO:0007519 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00390000001586 OMA:QQQAAFI EMBL:DAAA02002626
Ensembl:ENSBTAT00000005998 Uniprot:G3X6F9
Length = 370
Score = 114 (45.2 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 56/208 (26%), Positives = 86/208 (41%)
Query: 155 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 213
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 66 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 119
Query: 214 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 271
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 120 --------VAPSLATNASAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA--- 168
Query: 272 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 329
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 169 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT-------- 216
Query: 330 PGQAICSNYSMYGICKFGPTCRFDHPYA 357
+C +Y + G C C++ HP A
Sbjct: 217 --VTVCMDY-IKGRCS-REKCKYFHPPA 240
Score = 52 (23.4 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 53 CLFYRRTGLCGY-GSNCRFNHPAYAAQGAQYREELPERNGQP-DCGYYLKTGTCKYGSTC 110
C ++R G C + C+F HP+ + Q NG+ C LK G C C
Sbjct: 19 CREFQR-GTCSRPDTECKFAHPSKSCQ---------VENGRVIACFDSLK-GRCSR-ENC 66
Query: 111 KYHHP 115
KY HP
Sbjct: 67 KYLHP 71
>UNIPROTKB|E2QSC6 [details] [associations]
symbol:MBNL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
PROSITE:PS50103 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
Ensembl:ENSCAFT00000013656 Uniprot:E2QSC6
Length = 381
Score = 114 (45.2 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 56/208 (26%), Positives = 86/208 (41%)
Query: 155 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 213
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 66 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 119
Query: 214 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 271
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 120 --------VAPSLATNASAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA--- 168
Query: 272 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 329
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 169 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT-------- 216
Query: 330 PGQAICSNYSMYGICKFGPTCRFDHPYA 357
+C +Y + G C C++ HP A
Sbjct: 217 --VTVCMDY-IKGRCS-REKCKYFHPPA 240
Score = 52 (23.4 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 53 CLFYRRTGLCGY-GSNCRFNHPAYAAQGAQYREELPERNGQP-DCGYYLKTGTCKYGSTC 110
C ++R G C + C+F HP+ + Q NG+ C LK G C C
Sbjct: 19 CREFQR-GTCSRPDTECKFAHPSKSCQ---------VENGRVIACFDSLK-GRCSR-ENC 66
Query: 111 KYHHP 115
KY HP
Sbjct: 67 KYLHP 71
>UNIPROTKB|F6UUJ0 [details] [associations]
symbol:MBNL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
PROSITE:PS50103 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
GeneTree:ENSGT00390000001586 Ensembl:ENSCAFT00000013656
EMBL:AAEX03013688 EMBL:AAEX03013689 EMBL:AAEX03013690
Uniprot:F6UUJ0
Length = 387
Score = 114 (45.2 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 56/208 (26%), Positives = 86/208 (41%)
Query: 155 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 213
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 66 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 119
Query: 214 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 271
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 120 --------VAPSLATNASAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA--- 168
Query: 272 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 329
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 169 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT-------- 216
Query: 330 PGQAICSNYSMYGICKFGPTCRFDHPYA 357
+C +Y + G C C++ HP A
Sbjct: 217 --VTVCMDY-IKGRCS-REKCKYFHPPA 240
Score = 52 (23.4 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 53 CLFYRRTGLCGY-GSNCRFNHPAYAAQGAQYREELPERNGQP-DCGYYLKTGTCKYGSTC 110
C ++R G C + C+F HP+ + Q NG+ C LK G C C
Sbjct: 19 CREFQR-GTCSRPDTECKFAHPSKSCQ---------VENGRVIACFDSLK-GRCSR-ENC 66
Query: 111 KYHHP 115
KY HP
Sbjct: 67 KYLHP 71
>UNIPROTKB|F6UU15 [details] [associations]
symbol:MBNL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
PROSITE:PS50103 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
GeneTree:ENSGT00390000001586 OMA:QQQAAFI Ensembl:ENSCAFT00000013668
EMBL:AAEX03013688 EMBL:AAEX03013689 EMBL:AAEX03013690
Uniprot:F6UU15
Length = 399
Score = 114 (45.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 56/208 (26%), Positives = 86/208 (41%)
Query: 155 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 213
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 66 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 119
Query: 214 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 271
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 120 --------VAPSLATNASAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA--- 168
Query: 272 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 329
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 169 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT-------- 216
Query: 330 PGQAICSNYSMYGICKFGPTCRFDHPYA 357
+C +Y + G C C++ HP A
Sbjct: 217 --VTVCMDY-IKGRCS-REKCKYFHPPA 240
Score = 52 (23.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 53 CLFYRRTGLCGY-GSNCRFNHPAYAAQGAQYREELPERNGQP-DCGYYLKTGTCKYGSTC 110
C ++R G C + C+F HP+ + Q NG+ C LK G C C
Sbjct: 19 CREFQR-GTCSRPDTECKFAHPSKSCQ---------VENGRVIACFDSLK-GRCSR-ENC 66
Query: 111 KYHHP 115
KY HP
Sbjct: 67 KYLHP 71
>UNIPROTKB|F1SJM7 [details] [associations]
symbol:MBNL1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0007519 "skeletal muscle tissue development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 GO:GO:0008270 GO:GO:0003725
GO:GO:0010494 GO:GO:0007519 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00390000001586 OMA:QQQAAFI EMBL:CU856483
Ensembl:ENSSSCT00000012830 Uniprot:F1SJM7
Length = 399
Score = 114 (45.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 56/208 (26%), Positives = 86/208 (41%)
Query: 155 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 213
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 66 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 119
Query: 214 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 271
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 120 --------VAPSLATNASAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA--- 168
Query: 272 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 329
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 169 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT-------- 216
Query: 330 PGQAICSNYSMYGICKFGPTCRFDHPYA 357
+C +Y + G C C++ HP A
Sbjct: 217 --VTVCMDY-IKGRCS-REKCKYFHPPA 240
Score = 52 (23.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 53 CLFYRRTGLCGY-GSNCRFNHPAYAAQGAQYREELPERNGQP-DCGYYLKTGTCKYGSTC 110
C ++R G C + C+F HP+ + Q NG+ C LK G C C
Sbjct: 19 CREFQR-GTCSRPDTECKFAHPSKSCQ---------VENGRVIACFDSLK-GRCSR-ENC 66
Query: 111 KYHHP 115
KY HP
Sbjct: 67 KYLHP 71
>ASPGD|ASPL0000062209 [details] [associations]
symbol:AN0298 species:162425 "Emericella nidulans"
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 EMBL:BN001308
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
eggNOG:COG5084 EMBL:AACD01000006 HOGENOM:HOG000212457 KO:K14404
RefSeq:XP_657902.1 ProteinModelPortal:Q5BGN2 STRING:Q5BGN2
EnsemblFungi:CADANIAT00002417 GeneID:2876077 KEGG:ani:AN0298.2
OMA:DPDRPVC OrthoDB:EOG4PG99D Uniprot:Q5BGN2
Length = 254
Score = 94 (38.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 21/76 (27%), Positives = 33/76 (43%)
Query: 287 PDCRYYMNTGTCKYGADCKFHHPKERIAQSAASN-------IGPLGLPSRPGQAICSNYS 339
P+C+ + +G C G DC + H +E+ + +GPL + +C Y
Sbjct: 118 PECQSFSRSGYCPNGDDCLYQHVREQARLPPCEHYDQGFCPLGPLCAKRHVRRRLCPYY- 176
Query: 340 MYGICKFGPTCRFDHP 355
+ G C GP C HP
Sbjct: 177 VAGFCPEGPNCANAHP 192
Score = 67 (28.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 33/110 (30%), Positives = 42/110 (38%)
Query: 108 STCKYHHPK-DRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLG 166
ST + P DR P G + D C Y G C G AC HP PS +
Sbjct: 14 STDRTREPGFDRFSFVPFLRKSYGFGLVTDVPVCKAYSE-GHCPLGPACPDRHPTPSRVT 72
Query: 167 TALPL-TGNASLGSMGSSVLPS--SGLQYAGS----LPTWSLQRAPYLSS 209
T+ +G A + GS V GL G L ++L+R P S
Sbjct: 73 TSTTTASGLAPSTTHGSLVCKHFLKGLCKKGMKCEYLHEYNLRRMPECQS 122
>UNIPROTKB|H7C4T5 [details] [associations]
symbol:MBNL1 "Muscleblind-like protein 1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 EMBL:AC026347 EMBL:AC106722 HGNC:HGNC:6923
ChiTaRS:MBNL1 ProteinModelPortal:H7C4T5 Ensembl:ENST00000464596
Uniprot:H7C4T5
Length = 329
Score = 111 (44.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 57/209 (27%), Positives = 86/209 (41%)
Query: 155 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 213
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 65 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 118
Query: 214 TQSYMPLIVSPSQGI-VPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQM 270
V+PS A +N Y+G + P L P I + + + N G + A A
Sbjct: 119 --------VAPSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA-- 168
Query: 271 HILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPS 328
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 169 ---AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT------- 216
Query: 329 RPGQAICSNYSMYGICKFGPTCRFDHPYA 357
+C +Y + G C C++ HP A
Sbjct: 217 ---VTVCMDY-IKGRCS-REKCKYFHPPA 240
Score = 52 (23.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 53 CLFYRRTGLCGY-GSNCRFNHPAYAAQGAQYREELPERNGQP-DCGYYLKTGTCKYGSTC 110
C ++R G C + C+F HP+ + Q NG+ C LK G C C
Sbjct: 18 CREFQR-GTCSRPDTECKFAHPSKSCQ---------VENGRVIACFDSLK-GRCSR-ENC 65
Query: 111 KYHHP 115
KY HP
Sbjct: 66 KYLHP 70
Score = 43 (20.2 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 140 CPYYMRTGSC-KFGVACKFHHPQPS 163
C + R G+C + CKF HP S
Sbjct: 18 CREFQR-GTCSRPDTECKFAHPSKS 41
>UNIPROTKB|E2REH2 [details] [associations]
symbol:MKRN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000571
Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GO:GO:0005622 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 GeneTree:ENSGT00390000014093 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:AAEX03012060
Ensembl:ENSCAFT00000007980 Uniprot:E2REH2
Length = 416
Score = 83 (34.3 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 21/70 (30%), Positives = 30/70 (42%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C ++ G+C G+ C F+H +L C YY K G C YG+ C+Y
Sbjct: 8 CRYFMH-GVCREGNQCLFSH------------DLANSKPSTICKYYQK-GYCAYGTRCRY 53
Query: 113 HHPKDRNGAG 122
H + AG
Sbjct: 54 DHTRPSAAAG 63
Score = 63 (27.2 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 289 CRYY-MNTGTCKYGADCKFHH--PKERIAQ 315
C+Y+ GTC +G+ C + H P R+A+
Sbjct: 327 CKYFEQGKGTCPFGSKCLYRHAYPDGRLAE 356
Score = 60 (26.2 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 136 DEKSCPYYMRTGSCKFGVACKFHH 159
+++ CPY G C+FG AC + H
Sbjct: 167 EQQLCPY-AAAGECRFGDACVYLH 189
>UNIPROTKB|C9JP00 [details] [associations]
symbol:MBNL1 "Muscleblind-like protein 1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 EMBL:AC026347 EMBL:AC106722 HGNC:HGNC:6923
HOGENOM:HOG000230928 ChiTaRS:MBNL1 IPI:IPI00945690
ProteinModelPortal:C9JP00 SMR:C9JP00 STRING:C9JP00
Ensembl:ENST00000498502 ArrayExpress:C9JP00 Bgee:C9JP00
Uniprot:C9JP00
Length = 348
Score = 111 (44.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 57/209 (27%), Positives = 86/209 (41%)
Query: 155 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 213
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 66 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 119
Query: 214 TQSYMPLIVSPSQGI-VPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQM 270
V+PS A +N Y+G + P L P I + + + N G + A A
Sbjct: 120 --------VAPSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA-- 169
Query: 271 HILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPS 328
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 170 ---AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT------- 217
Query: 329 RPGQAICSNYSMYGICKFGPTCRFDHPYA 357
+C +Y + G C C++ HP A
Sbjct: 218 ---VTVCMDY-IKGRCS-REKCKYFHPPA 241
Score = 52 (23.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 53 CLFYRRTGLCGY-GSNCRFNHPAYAAQGAQYREELPERNGQP-DCGYYLKTGTCKYGSTC 110
C ++R G C + C+F HP+ + Q NG+ C LK G C C
Sbjct: 19 CREFQR-GTCSRPDTECKFAHPSKSCQ---------VENGRVIACFDSLK-GRCSR-ENC 66
Query: 111 KYHHP 115
KY HP
Sbjct: 67 KYLHP 71
>UNIPROTKB|Q9NR56 [details] [associations]
symbol:MBNL1 "Muscleblind-like protein 1" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:0007519 "skeletal muscle tissue
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0001701 "in utero
embryonic development" evidence=ISS] [GO:0030326 "embryonic limb
morphogenesis" evidence=ISS] [GO:0045445 "myoblast differentiation"
evidence=ISS] [GO:0007399 "nervous system development"
evidence=ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0043484 "regulation of RNA
splicing" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 GO:GO:0005634
GO:GO:0007399 GO:GO:0008380 GO:GO:0046872 EMBL:CH471052
GO:GO:0008270 GO:GO:0001701 GO:GO:0003676 GO:GO:0030326
GO:GO:0003725 GO:GO:0043484 GO:GO:0045445 GO:GO:0010494
GO:GO:0007519 GO:GO:0006376 GO:GO:0000381 MIM:160900
eggNOG:NOG241142 KO:K14943 CTD:4154 HOVERGEN:HBG006999
OrthoDB:EOG4BRWN5 EMBL:Y13829 EMBL:AB007888 EMBL:AF255334
EMBL:AF395876 EMBL:AF401998 EMBL:AJ308400 EMBL:AF497718
EMBL:AF497719 EMBL:AC026347 EMBL:AC106722 EMBL:BC043493
IPI:IPI00021692 IPI:IPI00178116 IPI:IPI00218263 IPI:IPI00384261
IPI:IPI00395357 IPI:IPI00410205 IPI:IPI00410279 RefSeq:NP_066368.2
RefSeq:NP_997175.1 RefSeq:NP_997176.1 RefSeq:NP_997177.1
RefSeq:NP_997178.1 RefSeq:NP_997179.1 RefSeq:NP_997180.1
UniGene:Hs.201858 UniGene:Hs.725347 PDB:3D2N PDB:3D2Q PDB:3D2S
PDBsum:3D2N PDBsum:3D2Q PDBsum:3D2S ProteinModelPortal:Q9NR56
SMR:Q9NR56 IntAct:Q9NR56 MINT:MINT-3072751 STRING:Q9NR56
PhosphoSite:Q9NR56 DMDM:17369313 PaxDb:Q9NR56 PeptideAtlas:Q9NR56
PRIDE:Q9NR56 DNASU:4154 Ensembl:ENST00000282486
Ensembl:ENST00000282488 Ensembl:ENST00000324196
Ensembl:ENST00000324210 Ensembl:ENST00000355460
Ensembl:ENST00000357472 Ensembl:ENST00000463374
Ensembl:ENST00000465907 Ensembl:ENST00000485910
Ensembl:ENST00000492948 Ensembl:ENST00000545754 GeneID:4154
KEGG:hsa:4154 UCSC:uc003ezi.3 UCSC:uc003ezm.3 UCSC:uc003ezo.3
GeneCards:GC03P151961 HGNC:HGNC:6923 HPA:CAB016398 MIM:606516
neXtProt:NX_Q9NR56 PharmGKB:PA30666 HOGENOM:HOG000230928
InParanoid:Q9NR56 OMA:QQQAAFI PhylomeDB:Q9NR56 ChEMBL:CHEMBL1293317
ChiTaRS:MBNL1 EvolutionaryTrace:Q9NR56 GenomeRNAi:4154
NextBio:16346 ArrayExpress:Q9NR56 Bgee:Q9NR56 CleanEx:HS_MBNL1
Genevestigator:Q9NR56 GermOnline:ENSG00000152601 Uniprot:Q9NR56
Length = 388
Score = 111 (44.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 57/209 (27%), Positives = 86/209 (41%)
Query: 155 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 213
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 66 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 119
Query: 214 TQSYMPLIVSPSQGI-VPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQM 270
V+PS A +N Y+G + P L P I + + + N G + A A
Sbjct: 120 --------VAPSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA-- 169
Query: 271 HILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPS 328
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 170 ---AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT------- 217
Query: 329 RPGQAICSNYSMYGICKFGPTCRFDHPYA 357
+C +Y + G C C++ HP A
Sbjct: 218 ---VTVCMDY-IKGRCS-REKCKYFHPPA 241
Score = 52 (23.4 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 53 CLFYRRTGLCGY-GSNCRFNHPAYAAQGAQYREELPERNGQP-DCGYYLKTGTCKYGSTC 110
C ++R G C + C+F HP+ + Q NG+ C LK G C C
Sbjct: 19 CREFQR-GTCSRPDTECKFAHPSKSCQ---------VENGRVIACFDSLK-GRCSR-ENC 66
Query: 111 KYHHP 115
KY HP
Sbjct: 67 KYLHP 71
>WB|WBGene00009537 [details] [associations]
symbol:ccch-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0009792
GO:GO:0008270 GO:GO:0003676 eggNOG:COG5063
GeneTree:ENSGT00530000063262 EMBL:Z82267 HOGENOM:HOG000114059
PIR:T21961 RefSeq:NP_502931.1 ProteinModelPortal:O45491 SMR:O45491
IntAct:O45491 STRING:O45491 EnsemblMetazoa:F38C2.5 GeneID:178454
KEGG:cel:CELE_F38C2.5 UCSC:F38C2.5 CTD:178454 WormBase:F38C2.5
InParanoid:O45491 NextBio:901202 Uniprot:O45491
Length = 186
Score = 113 (44.8 bits), Expect = 0.00021, P = 0.00021
Identities = 24/66 (36%), Positives = 32/66 (48%)
Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 348
C+ + T C YG CKF H E + Q N G + P +C N+S G CK+G
Sbjct: 78 CKTFQLTRACSYGEQCKFAHSVEEL-QLKQKNRG-VNHPKYK-TVLCDNFSRTGHCKYGT 134
Query: 349 TCRFDH 354
C+F H
Sbjct: 135 KCQFIH 140
>UNIPROTKB|F1NI93 [details] [associations]
symbol:MKRN2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR001841 InterPro:IPR000571
Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GO:GO:0005622 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 GeneTree:ENSGT00390000014093 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:AADN02013930
IPI:IPI00584461 Ensembl:ENSGALT00000007996 Uniprot:F1NI93
Length = 417
Score = 87 (35.7 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 24/74 (32%), Positives = 31/74 (41%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C +Y + G+C GS C F+H +L C YY K G C YG+ C+Y
Sbjct: 8 CRYYVQ-GVCREGSKCLFSH------------DLSSSKSSTVCKYYQK-GQCAYGARCRY 53
Query: 113 HH---PKDRNGAGP 123
H P A P
Sbjct: 54 DHIRLPASGGAAAP 67
Score = 60 (26.2 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 272 ILSASSQNLPERPDQPDCRYY-MNTGTCKYGADCKFHH 308
++ A Q + ++P C+Y+ GTC +G C + H
Sbjct: 313 LIEAFKQGVGKKP----CKYFEQGKGTCPFGGKCLYFH 346
Score = 56 (24.8 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 128 ILGLPMRQDEKSCPYYMRTGSCKFGVACKFHH 159
+ G E+ CPY G+C FG C + H
Sbjct: 158 VAGSSFGDGEQLCPY-AAAGACHFGDRCLYLH 188
>UNIPROTKB|Q13064 [details] [associations]
symbol:MKRN3 "Probable E3 ubiquitin-protein ligase
makorin-3" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001841 InterPro:IPR000571 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 UniPathway:UPA00143
Prosite:PS00518 GO:GO:0046872 GO:GO:0016874 GO:GO:0008270
GO:GO:0003676 GO:GO:0016567 GO:GO:0030529 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 eggNOG:NOG268458 HOGENOM:HOG000252976 KO:K15687
HOVERGEN:HBG066965 EMBL:U19107 EMBL:BC044639 IPI:IPI00024229
PIR:G01614 RefSeq:NP_005655.1 UniGene:Hs.679587 UniGene:Hs.72964
ProteinModelPortal:Q13064 SMR:Q13064 IntAct:Q13064 STRING:Q13064
PhosphoSite:Q13064 DMDM:17368438 PaxDb:Q13064 PeptideAtlas:Q13064
PRIDE:Q13064 DNASU:7681 Ensembl:ENST00000314520 GeneID:7681
KEGG:hsa:7681 UCSC:uc001ywh.4 CTD:7681 GeneCards:GC15P023810
HGNC:HGNC:7114 HPA:HPA029494 MIM:603856 neXtProt:NX_Q13064
PharmGKB:PA30833 InParanoid:Q13064 OMA:HGQCKEG OrthoDB:EOG4QRH4M
PhylomeDB:Q13064 ChiTaRS:MKRN3 GenomeRNAi:7681 NextBio:29794
ArrayExpress:Q13064 Bgee:Q13064 CleanEx:HS_MKRN3
Genevestigator:Q13064 GermOnline:ENSG00000179455 InterPro:IPR026294
PANTHER:PTHR11224:SF16 Uniprot:Q13064
Length = 507
Score = 82 (33.9 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 43/173 (24%), Positives = 62/173 (35%)
Query: 140 CPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSLPTW 199
C YY+ G CK G C++ H G + G S + PS+ PT
Sbjct: 101 CRYYIH-GQCKEGENCRYSHDLS---GRKMATEGGVSPPGASAGGGPSTAAHIEP--PTQ 154
Query: 200 SLQRAPYLSSRLQGTQSYMPLIVSPSQ-GIVPAPGWNTYMGNIGPLSPTSIAGS-NLIYS 257
+ AP +S L +P+I S ++ G A N G G S A + +
Sbjct: 155 EVAEAPPAASSLS-----LPVIGSAAERGFFEAERDNADRGAAGGAGVESWADAIEFVPG 209
Query: 258 SRNQGDLGAGAQMHILSASSQNLPERPDQPDCR--YYMNTGTCKYGADCKFHH 308
+G A A L +S + R YY + G C G C + H
Sbjct: 210 QPYRGRWVASAPEAPLQSSETERKQMAVGSGLRFCYYASRGVCFRGESCMYLH 262
Score = 75 (31.5 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 73 PAYAAQGAQYREELPERNG-----QPDCGYYLKTGTCKYGSTCKYHH 114
PA A+ G + LP R+ Q C YY+ G CK G C+Y H
Sbjct: 74 PAPASGGGAWPSPLPSRSSGIWTKQIICRYYIH-GQCKEGENCRYSH 119
Score = 49 (22.3 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 342 GICKFGPTCRFDHPY 356
G C FG TC + H Y
Sbjct: 408 GNCPFGDTCFYKHEY 422
>UNIPROTKB|C9JEV9 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0005739 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000212457 HGNC:HGNC:2327 EMBL:AC073063 IPI:IPI00927478
ProteinModelPortal:C9JEV9 SMR:C9JEV9 STRING:C9JEV9
Ensembl:ENST00000451876 ArrayExpress:C9JEV9 Bgee:C9JEV9
Uniprot:C9JEV9
Length = 211
Score = 113 (44.8 bits), Expect = 0.00038, P = 0.00038
Identities = 25/76 (32%), Positives = 36/76 (47%)
Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAA---SNIGPLGLPSRPGQAICSNYSMYGICK 345
C++++ G CK G C+F H + S GPL + IC NY + G C
Sbjct: 68 CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGPLCRHRHTRRVICVNY-LVGFCP 125
Query: 346 FGPTCRFDHPYAGYPI 361
GP+C+F HP P+
Sbjct: 126 EGPSCKFMHPRFELPM 141
>MGI|MGI:1861602 [details] [associations]
symbol:Cpsf4 "cleavage and polyadenylation specific factor
4" species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
MGI:MGI:1861602 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084
GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108 CTD:10898
GeneTree:ENSGT00390000009627 KO:K14404 OrthoDB:EOG4KH2VQ
EMBL:AK046064 EMBL:AF033201 EMBL:BC057067 IPI:IPI00309761
IPI:IPI00380450 IPI:IPI01027761 RefSeq:NP_848671.1
UniGene:Mm.196884 ProteinModelPortal:Q8BQZ5 SMR:Q8BQZ5
STRING:Q8BQZ5 PhosphoSite:Q8BQZ5 PaxDb:Q8BQZ5 PRIDE:Q8BQZ5
Ensembl:ENSMUST00000070487 GeneID:54188 KEGG:mmu:54188
UCSC:uc009amj.1 ChiTaRS:CPSF4 NextBio:311022 Bgee:Q8BQZ5
CleanEx:MM_CPSF4 Genevestigator:Q8BQZ5
GermOnline:ENSMUSG00000029625 Uniprot:Q8BQZ5
Length = 211
Score = 113 (44.8 bits), Expect = 0.00038, P = 0.00038
Identities = 25/76 (32%), Positives = 36/76 (47%)
Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAA---SNIGPLGLPSRPGQAICSNYSMYGICK 345
C++++ G CK G C+F H + S GPL + IC NY + G C
Sbjct: 68 CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGPLCRHRHTRRVICVNY-LVGFCP 125
Query: 346 FGPTCRFDHPYAGYPI 361
GP+C+F HP P+
Sbjct: 126 EGPSCKFMHPRFELPM 141
>UNIPROTKB|E2RBK7 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0005847 GeneTree:ENSGT00390000009627
EMBL:AAEX03004276 Ensembl:ENSCAFT00000023892 Uniprot:E2RBK7
Length = 212
Score = 113 (44.8 bits), Expect = 0.00039, P = 0.00039
Identities = 25/76 (32%), Positives = 36/76 (47%)
Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAA---SNIGPLGLPSRPGQAICSNYSMYGICK 345
C++++ G CK G C+F H + S GPL + IC NY + G C
Sbjct: 68 CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGPLCRHRHTRRVICVNY-LVGFCP 125
Query: 346 FGPTCRFDHPYAGYPI 361
GP+C+F HP P+
Sbjct: 126 EGPSCKFMHPRFELPM 141
>UNIPROTKB|Q9PTI4 [details] [associations]
symbol:MKRN1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:3.30.40.10
InterPro:IPR013083 eggNOG:COG5084 InterPro:IPR017907
InterPro:IPR026290 PANTHER:PTHR11224 HOGENOM:HOG000252976 KO:K15687
CTD:23608 GeneTree:ENSGT00390000014093 HOVERGEN:HBG066965
OMA:YQRGCCA OrthoDB:EOG45DWPM EMBL:AADN02006362 EMBL:AADN02006363
EMBL:AF192787 IPI:IPI00595405 RefSeq:NP_990073.1 UniGene:Gga.1197
Ensembl:ENSGALT00000020962 GeneID:395500 KEGG:gga:395500
InParanoid:Q9PTI4 NextBio:20815579 Uniprot:Q9PTI4
Length = 464
Score = 95 (38.5 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 26/85 (30%), Positives = 34/85 (40%)
Query: 37 GVAQASPYPARPG-----EPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNG 91
G A P PG + C ++ G+C G NCR++H Q A
Sbjct: 33 GPAAVPPLALGPGGGWTKQVTCRYFMH-GVCKEGDNCRYSHDLSTGQSAMV--------- 82
Query: 92 QPDCGYYLKTGTCKYGSTCKYHHPK 116
C YY + G C YG C+Y H K
Sbjct: 83 ---CRYYQR-GCCAYGDHCRYEHTK 103
Score = 56 (24.8 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 278 QNLPERPDQPDCRYY-MNTGTCKYGADCKFHH 308
Q E CRY+ G+C +G +C + H
Sbjct: 349 QKYKEAMSNKPCRYFDEGRGSCPFGGNCFYKH 380
Score = 49 (22.3 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 140 CPYYMRTGSCKFGVACKFHH 159
CPY G C++G C + H
Sbjct: 204 CPY-AAVGECRYGENCVYIH 222
>UNIPROTKB|F1LPR3 [details] [associations]
symbol:Mbnl1 "Protein Mbnl1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 IPI:IPI00567436 Ensembl:ENSRNOT00000018867
ArrayExpress:F1LPR3 Uniprot:F1LPR3
Length = 283
Score = 114 (45.2 bits), Expect = 0.00067, P = 0.00067
Identities = 56/208 (26%), Positives = 86/208 (41%)
Query: 155 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 213
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 8 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 61
Query: 214 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 271
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 62 --------VAPSLATNASAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA--- 110
Query: 272 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 329
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 111 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT-------- 158
Query: 330 PGQAICSNYSMYGICKFGPTCRFDHPYA 357
+C +Y + G C C++ HP A
Sbjct: 159 --VTVCMDY-IKGRCS-REKCKYFHPPA 182
>UNIPROTKB|I3LVF0 [details] [associations]
symbol:I3LVF0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00390000009627 EMBL:CU655901
Ensembl:ENSSSCT00000025766 OMA:REGSSAH Uniprot:I3LVF0
Length = 438
Score = 84 (34.6 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 58/212 (27%), Positives = 74/212 (34%)
Query: 93 PDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGL-PMRQDEKS-----CPYYMRT 146
P C Y+LK G C S C Y H A + + G P+ K CP + R
Sbjct: 225 PVCSYFLK-GICS-NSNCPYSHVYVSRRAEVCTDFLKGYCPLGAKCKKKHTLLCPDFSRR 282
Query: 147 GSCKFGVACKFHHPQPSSLG--TALPLTGNA-SLGSMGSSVLPSSGLQYAGSLPTWSLQR 203
G C G C+ H LG A P S S SSG Q P
Sbjct: 283 GVCPRGTQCQLLHRNRKRLGRRAATPTAPEPRSRASTSHGPRKSSGAQR----PARQTTS 338
Query: 204 APYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGD 263
+P ++ G+ S P S ++PA + P SP S + S S +Q
Sbjct: 339 SP--TAEAAGSAS--P---PSSPRVLPAAS-----SSPSPCSPPSASASPSASLSLDQDA 386
Query: 264 LGAGAQMHILSA-----SSQNLPERPDQPDCR 290
AG LS S Q+ P QP R
Sbjct: 387 ASAGTGSSSLSKLPSFISLQSSPSPGGQPGAR 418
Score = 77 (32.2 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 26/91 (28%), Positives = 37/91 (40%)
Query: 38 VAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNH-PAYAAQGAQY-REELPERNG---- 91
V QA + + C++Y R G C G +C + H P A ++ R + +G
Sbjct: 156 VRQARQRRRKRKQEYCMYYNRFGRCNRGQHCPYIHDPEKVAVCTRFVRGTCKKTDGTCPF 215
Query: 92 --------QPDCGYYLKTGTCKYGSTCKYHH 114
P C Y+LK G C S C Y H
Sbjct: 216 SHHVSKEKMPVCSYFLK-GICS-NSNCPYSH 244
>UNIPROTKB|F1M9N4 [details] [associations]
symbol:Mbnl1 "Protein Mbnl1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0005634
GO:GO:0008270 GO:GO:0003725 GO:GO:0010494 GO:GO:0007519
GO:GO:0006376 GO:GO:0000381 GeneTree:ENSGT00390000001586
IPI:IPI00373207 Ensembl:ENSRNOT00000036808 ArrayExpress:F1M9N4
Uniprot:F1M9N4
Length = 323
Score = 114 (45.2 bits), Expect = 0.00087, P = 0.00087
Identities = 56/208 (26%), Positives = 86/208 (41%)
Query: 155 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 213
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 8 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 61
Query: 214 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 271
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 62 --------VAPSLATNASAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA--- 110
Query: 272 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 329
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 111 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT-------- 158
Query: 330 PGQAICSNYSMYGICKFGPTCRFDHPYA 357
+C +Y + G C C++ HP A
Sbjct: 159 --VTVCMDY-IKGRCS-REKCKYFHPPA 182
>DICTYBASE|DDB_G0270148 [details] [associations]
symbol:cpsf4 "cleavage and polyadenylation
specificity factor 30 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 dictyBase:DDB_G0270148
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0006378 GO:GO:0003723 Gene3D:4.10.60.10
SUPFAM:SSF57756 eggNOG:COG5084 GO:GO:0005847 GO:GO:0006379
KO:K14404 RefSeq:XP_646578.1 ProteinModelPortal:Q55CA3 SMR:Q55CA3
STRING:Q55CA3 EnsemblProtists:DDB0233701 GeneID:8617548
KEGG:ddi:DDB_G0270148 InParanoid:Q55CA3 OMA:ECMYLHV
ProtClustDB:CLSZ2437480 Uniprot:Q55CA3
Length = 372
Score = 90 (36.7 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 287 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 339
P+C ++ G C +C + H P+E++ + GP + +C NY
Sbjct: 91 PECYFFSKHGECN-NQECMYLHVNPEEKVRECPWYSRGFCKHGPKCRHKHIKKLLCENYY 149
Query: 340 MYGICKFGPTCRFDHP 355
+ G C GP C++ HP
Sbjct: 150 L-GFCPEGPKCKYGHP 164
Score = 68 (29.0 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 88 ERNGQPDCGYYLKTGTCKYGSTCKYHHPK 116
+++G C ++LK G+C GS C Y H K
Sbjct: 31 DKDGSDICRFFLK-GSCTKGSDCPYKHTK 58
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.418 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 451 438 0.00088 118 3 11 23 0.45 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 42
No. of states in DFA: 612 (65 KB)
Total size of DFA: 302 KB (2152 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.76u 0.11s 39.87t Elapsed: 00:00:02
Total cpu time: 39.78u 0.11s 39.89t Elapsed: 00:00:02
Start: Thu May 9 13:48:19 2013 End: Thu May 9 13:48:21 2013