BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013033
         (451 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q94AD9|C3H3_ARATH Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis
           thaliana GN=At1g04990 PE=2 SV=1
          Length = 404

 Score =  382 bits (982), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/437 (48%), Positives = 268/437 (61%), Gaps = 53/437 (12%)

Query: 1   MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
           M D + V+S+ V+ +S+D IE+A  ++K+++     GV + +PYP RPGE DC FY RTG
Sbjct: 5   MSDTQHVQSSLVSIRSSDKIEDAFRKMKVNET----GVEELNPYPDRPGERDCQFYLRTG 60

Query: 61  LCGYGSNCRFNHPAYAAQG-AQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119
           LCGYGS+CR+NHP +  Q  A Y+EELPER GQPDC Y+LKTG CKYG TCKYHHPKDRN
Sbjct: 61  LCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRN 120

Query: 120 GAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGS 179
           GA PV FN++GLPMR  EK CPYY+RTG+C+FGVACKFHHPQP           N    +
Sbjct: 121 GAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVACKFHHPQPD----------NGHSTA 170

Query: 180 MGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMG 239
            G S  P++ L+YA  L   S         R Q  QSY+P++VSPSQG +P  GW  YM 
Sbjct: 171 YGMSSFPAADLRYASGLTMMSTYGT---LPRPQVPQSYVPILVSPSQGFLPPQGWAPYM- 226

Query: 240 NIGPLSPTSIAGSNLIYSSRNQGDL-GAGAQMHILSASSQNLPERPDQPDCRYYMNTGTC 298
                     A SN +Y+ +NQ    G+ A M +  A ++ L E  DQP+CR++MNTGTC
Sbjct: 227 ----------AASNSMYNVKNQPYYSGSSASMAMAVALNRGLSESSDQPECRFFMNTGTC 276

Query: 299 KYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 358
           KYG DCK+ HP  RI+Q   S I P  LP+RPGQ  C N+  YG CKFGP C+FDHP   
Sbjct: 277 KYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLP 336

Query: 359 YP-INYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPD 417
           YP +    SLP  +   S +  HQ IS T             PN    SD+ S+ +  PD
Sbjct: 337 YPGLTMATSLP--TPFASPVTTHQRISPT-------------PN---RSDSKSLSNGKPD 378

Query: 418 MKNSTTKNSDDSSKVDH 434
           +K    K S ++ K D+
Sbjct: 379 VK----KESSETEKPDN 391


>sp|O48772|C3H26_ARATH Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis
           thaliana GN=ZFN2 PE=2 SV=1
          Length = 453

 Score =  331 bits (849), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 200/466 (42%), Positives = 270/466 (57%), Gaps = 67/466 (14%)

Query: 5   RQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGY 64
           +QV+++  + +S D IE+   R+K++++     + Q+SPYP RPGE DC F+ RTG CGY
Sbjct: 6   QQVQNSTGSIRSPDKIEDTFRRMKVNED----NMEQSSPYPDRPGERDCQFFLRTGQCGY 61

Query: 65  GSNCRFNHP-AYAAQGA-QYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAG 122
           G++CR+NHP     QG   YR++LPER GQPDC    +TG CKYG TCKYHHPKDRNGAG
Sbjct: 62  GNSCRYNHPLTNLPQGIIYYRDQLPERVGQPDC----ETGACKYGPTCKYHHPKDRNGAG 117

Query: 123 PVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGS 182
           PV FN+LGLPMRQ EK CPYYM+TG C+FGVACKFHHP P S     P  G+++      
Sbjct: 118 PVLFNVLGLPMRQGEKPCPYYMQTGLCRFGVACKFHHPHPHS----QPSNGHSAY---AM 170

Query: 183 SVLPSSGLQYAGSLPTWSLQRAPYLS---SRLQGTQSYMPLIVSPSQGIVPAPGWNTYMG 239
           S  PS G  YA  +   SL  A Y +    ++  +Q+YMP +V+PSQG++P  GW TYM 
Sbjct: 171 SSFPSVGFPYASGMTMVSLPPATYGAIPRPQVPQSQAYMPYMVAPSQGLLPPQGWATYM- 229

Query: 240 NIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCK 299
                       SN IY+ + Q D  + A + +   S  +     ++ +CR++MNTGTCK
Sbjct: 230 ----------TASNPIYNMKTQLDSSSSASVAVTVTSHHH--SFSERAECRFFMNTGTCK 277

Query: 300 YGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH----- 354
           YG DCK+ HPKER+ QS  + + P+ LP+RPGQ  C N+  YG CKFG  C+FDH     
Sbjct: 278 YGDDCKYSHPKERLLQSPPTLLNPIVLPARPGQPACGNFKAYGFCKFGANCKFDHSMLLN 337

Query: 355 --------------PYAGYP---INYGLSLPPLSILDSSLMNHQ-AISATHSIETSP-DA 395
                         PY   P    N  +S PP     ++L N + A +   S+ET   D 
Sbjct: 338 PYNNTGLAMSSLPTPYPYAPPVSTNLRISSPPSPSDMTTLSNGKPAAAEAQSLETEKQDD 397

Query: 396 SSKIPNWVQ--------NSDAVSVQHQNPDMKNSTTKNSDDSSKVD 433
           S   P   +         SD+ S+ +  PD +  T K  DDS+++D
Sbjct: 398 SPTEPEKSEVEDSLPPNGSDSTSLPNDKPDAE--TEKQDDDSAELD 441


>sp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa
           subsp. japonica GN=Os11g0472000 PE=2 SV=2
          Length = 444

 Score =  322 bits (824), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 187/414 (45%), Positives = 242/414 (58%), Gaps = 40/414 (9%)

Query: 21  EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA---YAA 77
           EEA+W++ + +  E G      PYP R GEPDC +Y RTGLC +G  C+FNHPA    A 
Sbjct: 36  EEAMWQMNLGEAMEAG------PYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAV 89

Query: 78  QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
             A+ + E P+R GQP+C YYLKTGTCK+G+TCK+HHP+++   A  V  N LG P+R +
Sbjct: 90  AAARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPN 149

Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL 196
           EK C YY+RTG CKFG  CKFHHPQPS+   A+      S+ S G SV   S   Y G++
Sbjct: 150 EKECAYYLRTGQCKFGSTCKFHHPQPSNTMVAV----RGSVYSPGQSVTSPSQHTYPGAV 205

Query: 197 PTWSLQR-APYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSP----TSIA 250
             W L R A +++S R  G  SY  +IV P  G+V  PGWN Y   IG  S      +  
Sbjct: 206 TNWPLSRSASFIASPRWPGHSSYAQVIVPP--GLVQVPGWNPYAAQIGSSSSDDQQRTAG 263

Query: 251 GSNLIYSSR-----NQGDLG------AGAQ-MHILSASSQNL-PERPDQPDCRYYMNTGT 297
           G+     SR     N GD G      AG+  + + +   +++ PERPDQP+C++YM TG 
Sbjct: 264 GAQYYTGSRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGD 323

Query: 298 CKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 357
           CK+GA CKFHHPKERI  +    +  LGLP RPG+ IC+ YS YGICKFGP C+FDHP  
Sbjct: 324 CKFGAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHPMG 383

Query: 358 GYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSV 411
              + YGL+  P    D S     A    HS E SPD  S     + +SD+  +
Sbjct: 384 T--VMYGLATSPTG--DVSARRMLAPVPAHS-EVSPDNVSGRSRRITHSDSQQI 432


>sp|Q9SWF9|ZFNL_PEA Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum
           sativum PE=2 SV=1
          Length = 417

 Score =  317 bits (813), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 166/361 (45%), Positives = 225/361 (62%), Gaps = 30/361 (8%)

Query: 21  EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
           +EA+W++ +  ++      ++ PYP  PGEPDC +Y RTGLC +G+ CRFNHP     A 
Sbjct: 8   QEAMWQMNLRSSE----TMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAI 63

Query: 78  QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
             A+ + E PER GQP+C YYLKTGTCK+G+TC++HHPKD+ G AG V+ NILG P+R +
Sbjct: 64  ATARMKGEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPN 123

Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL 196
           E    YY+RTG CKFG  CKFHHPQPS++   L + G+    ++ S   P     YA  +
Sbjct: 124 ESERAYYLRTGQCKFGNTCKFHHPQPSNM--VLSMRGSTVYPTVQSPTTPGQ-QSYAAGI 180

Query: 197 PTWSLQRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLI 255
             WS   + Y+ S R QG  SY PLI+   QG+V  PGW+TY G +G  SP     ++  
Sbjct: 181 TNWS--SSSYVPSPRWQGPSSYAPLILP--QGVVSVPGWSTYGGQMGSESPQQTMRNDQT 236

Query: 256 YSSRNQGDL-GAGAQ------------MHILSASSQNL-PERPDQPDCRYYMNTGTCKYG 301
           Y + +QG+L  AG Q            +   +    N+ PERPDQP+C++YM TG CK+G
Sbjct: 237 YGTSHQGELENAGLQGAYSQYRSGSVPVGFYALQRDNIFPERPDQPECQFYMKTGDCKFG 296

Query: 302 ADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI 361
           A C+FHHP+ER   +    + P+GLP RPG+ +C  YS YGICKFGP+C+FDHP   +  
Sbjct: 297 AVCRFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTY 356

Query: 362 N 362
           N
Sbjct: 357 N 357


>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa
           subsp. japonica GN=Os12g0405100 PE=2 SV=1
          Length = 454

 Score =  306 bits (784), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 170/387 (43%), Positives = 225/387 (58%), Gaps = 44/387 (11%)

Query: 21  EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
           EEA+W++ +     GG   +++PYP R GEPDC +Y RTGLC +G  C+FNHP     A 
Sbjct: 44  EEAMWQMTL----GGGESMESTPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRKLAV 99

Query: 78  QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
             A+   E P R GQP+C YYLKTGTCK+G+TCK+HHP+++   A  V  N+LG PMR +
Sbjct: 100 AAARMNGEYPYRVGQPECQYYLKTGTCKFGATCKFHHPREKAALANRVQLNVLGYPMRPN 159

Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL 196
           EK C YY+RTG CKF   CKFHHPQPS+   A+      S+ S G S        Y G++
Sbjct: 160 EKECAYYLRTGQCKFASTCKFHHPQPSNTMVAV----RNSMYSPGQSATSPGQHTYPGAV 215

Query: 197 PTWSLQR-APYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSP-------- 246
             W+L R A +++S R  G   Y  +IV   QG+V  PGWN Y   +G  SP        
Sbjct: 216 TNWTLSRSASFIASPRWPGHSGYAQVIVP--QGLVQVPGWNPYAAQMGSSSPDDQQRTPV 273

Query: 247 -----------TSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNL-PERPDQPDCRYYMN 294
                      T   G + +Y S   G +  G    + +   +N+ PERPDQP+C++YM 
Sbjct: 274 TTQYYGSRQSETGGMGDHGMYQSYQGGSVPVG----VYTVQGENIFPERPDQPECQFYMK 329

Query: 295 TGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 354
           TG CK+GA CKFHHPKER+  +    +  LGLP RPG+ +C+ YS YGICKFGP C+FDH
Sbjct: 330 TGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDH 389

Query: 355 PYAGYPINYGLSLPPLSILDSSLMNHQ 381
           P     + YG +  P    D S M++Q
Sbjct: 390 PMG--TLMYGSATSPRG--DVSSMHYQ 412


>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa
           subsp. japonica GN=Os01g0917400 PE=2 SV=2
          Length = 439

 Score =  304 bits (778), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 162/368 (44%), Positives = 210/368 (57%), Gaps = 43/368 (11%)

Query: 22  EAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA---YAAQ 78
           E +W+        G G  Q  PYP R GEPDC +Y RTGLC +G +CRFNHP     A  
Sbjct: 58  EGMWQ---QMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIA 114

Query: 79  GAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQDE 137
            A+ + E PER GQP+C YYLKTGTCK+G TCK+HHP+++ G AG V  N LG P+R  E
Sbjct: 115 SARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSE 174

Query: 138 KSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPS------SGLQ 191
           K C YY++TG CK+G  CKFHHP+            NA   S GS + PS      +G  
Sbjct: 175 KECAYYLKTGQCKYGNTCKFHHPE----------LFNAMASSRGSPIYPSVHSSATAGPP 224

Query: 192 YAGSLPTWSLQRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIA 250
           Y G++ +W+  R  ++ S R Q   +Y P+IV   QG+V  P WN+Y G + P+S +   
Sbjct: 225 YTGTMASWAFPRGSFIPSPRWQNPSNYAPMIVP--QGLVQVPSWNSYTGQMMPVSSSESR 282

Query: 251 ----GSNLIYSSRNQGDLGAGAQMHILSASSQN-------------LPERPDQPDCRYYM 293
               G+   Y +  Q D  AG Q  +    S +              PERPDQP+C+YYM
Sbjct: 283 LQSPGAQQTYGTSQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYM 342

Query: 294 NTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFD 353
            TG CK+GA CKFHHP+ R   +    + P+GLP RPG+ +C  YS YGICKFG  C+FD
Sbjct: 343 KTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFD 402

Query: 354 HPYAGYPI 361
           HP    P+
Sbjct: 403 HPTMAPPM 410


>sp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis
           thaliana GN=ZFN1 PE=1 SV=1
          Length = 397

 Score =  285 bits (730), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 158/401 (39%), Positives = 222/401 (55%), Gaps = 53/401 (13%)

Query: 21  EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
           ++A+W++ +  ++      +   YP RPGEPDC +Y RTGLC +GS CRFNHP       
Sbjct: 18  QDAMWQMNLSSDE----TMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVI 73

Query: 78  QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
             A+ R E PER GQP+C YYLKTGTCK+G TCK+HHP+++ G AG VS N+LG P+R +
Sbjct: 74  ATARMRGEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSN 133

Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL 196
           E  C Y++RTG CKFG  CKF+HPQP      +P +G  S                    
Sbjct: 134 EVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQSY------------------- 174

Query: 197 PTWSLQRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLI 255
             WS  RA +++S R Q   SY  LI+   QG+VP  GWN Y G +G +SP+   G++  
Sbjct: 175 -PWS--RASFIASPRWQDPSSYASLIMP--QGVVPVQGWNPYSGQLGSVSPSG-TGNDQN 228

Query: 256 YSSRNQGDLGAGAQMHILSASSQN------------------LPERPDQPDCRYYMNTGT 297
           Y +  Q +          S S  N                   PERP QP+C++YM TG 
Sbjct: 229 YRNLQQNETIESGSQSQGSFSGYNPGSSVPLGGYYALPRENVFPERPGQPECQFYMKTGD 288

Query: 298 CKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 357
           CK+G  CKFHHP++R A      +  +GLP RPG+ +C  Y+ YGICKFGP+C+FDHP  
Sbjct: 289 CKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHPMR 348

Query: 358 GYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSK 398
            +  +   S     ++++S    + +S + + + +  +S K
Sbjct: 349 VFTYDNTASETD-EVVETSTGKSRRLSVSETRQAATTSSGK 388


>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis
           thaliana GN=At2g47850 PE=2 SV=2
          Length = 468

 Score =  268 bits (684), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 142/351 (40%), Positives = 200/351 (56%), Gaps = 32/351 (9%)

Query: 20  IEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYA 76
           ++E++WRL +  +           YP RPG PDC +Y RTG+CGYG+ CR+NHP   A  
Sbjct: 28  LQESMWRLGLGSDS----------YPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRASV 77

Query: 77  AQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGLPMRQ 135
               +   + PER G+P C +YLKTGTCK+G++CK+HHPK+  G+   V  NI G P+R+
Sbjct: 78  EATVRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVRE 137

Query: 136 DEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGS 195
            +  C YY++TG CKFG+ CKFHHPQP+      P            S++P    QY G 
Sbjct: 138 GDNECSYYLKTGQCKFGITCKFHHPQPAGTTVPPPPASAPQFYPSVQSLMPD---QYGGP 194

Query: 196 LPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSP-------- 246
             +  + R     S +QG  +Y P++++P  G+VP PGW+ Y   + P LSP        
Sbjct: 195 SSSLRVARTLLPGSYMQG--AYGPMLLTP--GVVPIPGWSPYSAPVSPALSPGAQHAVGA 250

Query: 247 TSIAGSNLIYSSRNQ--GDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADC 304
           TS+ G   + S+     G   + +    +    Q  PERP +P+C+YY+ TG CK+G  C
Sbjct: 251 TSLYGVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCKFGTSC 310

Query: 305 KFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 355
           KFHHP++R+   A   + P+GLP RPG   C+ Y   G CKFG TC+FDHP
Sbjct: 311 KFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHP 361



 Score = 79.7 bits (195), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 51/94 (54%), Gaps = 3/94 (3%)

Query: 263 DLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIG 322
           D G    M  L   S + PERP  PDC YYM TG C YG  C+++HP++R   S  + + 
Sbjct: 25  DTGLQESMWRLGLGSDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDR--ASVEATVR 82

Query: 323 PLG-LPSRPGQAICSNYSMYGICKFGPTCRFDHP 355
             G  P R G+  C  Y   G CKFG +C+F HP
Sbjct: 83  ATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHP 116


>sp|Q8L7N8|C3H57_ARATH Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis
           thaliana GN=ZFN3 PE=2 SV=2
          Length = 375

 Score =  254 bits (650), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 155/407 (38%), Positives = 213/407 (52%), Gaps = 64/407 (15%)

Query: 21  EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
           + A+W++ +  +   G       YP R GEPDC +Y RTGLC +GS CRFNHP       
Sbjct: 19  QNAMWQMNLGSDDTMG---VDGSYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVI 75

Query: 78  QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGLPMRQD 136
             A+ + E PER GQP+C +YLKTGTCK+G TCK+HHP+++ G  G VS N+L  P+R +
Sbjct: 76  ATARIKGEYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPN 135

Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL 196
           E  C Y++R G CKFG  CKF+HPQ  S         N  +   GS V   S LQ     
Sbjct: 136 EDDCSYFLRIGQCKFGGTCKFNHPQTQST--------NLMVSVRGSPVY--SALQSLTGQ 185

Query: 197 PTWSLQRAPYLSS--RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNL 254
           P++S  R  ++++  RLQ    +     S SQG + + G+++  GN  PL   ++   N+
Sbjct: 186 PSYSWSRTSFVANPPRLQDPSGF----ASGSQGGLFSSGFHS--GNSVPLGFYALPRENV 239

Query: 255 IYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIA 314
                                     PERP QP+C++YM TG CK+G  CKFHHP++R  
Sbjct: 240 -------------------------FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQT 274

Query: 315 QSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILD 374
                 +  +GLP RPG+ +C  YS YGICKFGP+C+FDHP   +  N   + P  S   
Sbjct: 275 PPPDCVLSSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMRVFTYNNNTASPSPS--- 331

Query: 375 SSLMNHQAIS-------ATHSIETSPDASSKIPNWVQNSDA-VSVQH 413
           SSL    AI+        + S+E  P   + +P      D  V  QH
Sbjct: 332 SSLHQETAITTELRNLLVSSSVEAKP---TSLPETTSAKDTIVDAQH 375


>sp|Q6NPN3|C3H58_ARATH Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis
           thaliana GN=At5g18550 PE=2 SV=1
          Length = 465

 Score =  254 bits (649), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 146/359 (40%), Positives = 201/359 (55%), Gaps = 27/359 (7%)

Query: 13  ANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNH 72
           A  +   IE ++WRL +              +P RP EPDC++Y RTG+CGYGS CRFNH
Sbjct: 22  AQGTETGIEASMWRLGLRGGG-----GGGETFPERPDEPDCIYYLRTGVCGYGSRCRFNH 76

Query: 73  PAYAA--QGAQYRE--ELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG---AGPVS 125
           P   A   G    E  E PER GQP C ++++TGTCK+G++CKYHHP+   G     PVS
Sbjct: 77  PRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVS 136

Query: 126 FNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVL 185
            N +G P+R  EK C Y+MRTG CKFG  C++HHP P   G   P        S G ++ 
Sbjct: 137 LNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPP--GVQAPSQQQQQQLSAGPTMY 194

Query: 186 PSSGLQYAGSLPTWSLQRA-PYL--SSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIG 242
           PS   Q   S   + +  A P L   S +Q    Y  +++ P  G+VP  GWN Y  ++ 
Sbjct: 195 PSLQSQTVPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVLPP--GMVPYSGWNPYQASVS 252

Query: 243 PL-SPTS--IAGSNLIYS----SRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNT 295
            + SP +    G++ +Y     S +     +G     +S   Q  P+RP+QP+C+Y+M T
Sbjct: 253 AMPSPGTQPSMGTSSVYGITPLSPSAPAYQSGPSSTGVSNKEQTFPQRPEQPECQYFMRT 312

Query: 296 GTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 354
           G CK+G  C+FHHP E  A   AS +  +GLP RPG   C++++ +GICKFGP C+FDH
Sbjct: 313 GDCKFGTSCRFHHPME-AASPEASTLSHIGLPLRPGAVPCTHFAQHGICKFGPACKFDH 370



 Score = 79.3 bits (194), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 27/125 (21%)

Query: 73  PAY----AAQGAQYREE-LPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFN 127
           PAY    ++ G   +E+  P+R  QP+C Y+++TG CK+G++C++HHP +       + +
Sbjct: 279 PAYQSGPSSTGVSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEASTLS 338

Query: 128 ILGLPMRQDEKSCPYYMRTGSCKFGVACKFHH----------------------PQPSSL 165
            +GLP+R     C ++ + G CKFG ACKF H                      P PSSL
Sbjct: 339 HIGLPLRPGAVPCTHFAQHGICKFGPACKFDHSLGSSSLSYSPSPSSLTDMPVAPYPSSL 398

Query: 166 GTALP 170
           GT  P
Sbjct: 399 GTLAP 403


>sp|Q9SQU4|C3H34_ARATH Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis
           thaliana GN=At3g06410 PE=2 SV=2
          Length = 462

 Score =  246 bits (629), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 139/354 (39%), Positives = 202/354 (57%), Gaps = 23/354 (6%)

Query: 20  IEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA-YAAQ 78
           +E  +WRL +     GGG  ++  YP RP EPDC++Y RTG+CGYGS CRFNHP    A 
Sbjct: 29  VEAPMWRLGLSGGGGGGGGGES--YPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAV 86

Query: 79  GAQYREE---LPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAG---PVSFNILGLP 132
               R E   LPER G P C ++++TGTCK+G++CKYHHP+   G G   PVS + LG P
Sbjct: 87  IGGVRGEAGALPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYP 146

Query: 133 MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGS--SVLPSSGL 190
           +R  EK C YY+RTG CKFG+ C+F+HP P ++                   ++ P+   
Sbjct: 147 LRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQPQLQTIYPTLQS 206

Query: 191 QYAGSLPTWSL--QRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPL-SPT 247
           Q   S   + L   R  +L+     +    P+++ P  G+VP  GWN Y  ++  + SP 
Sbjct: 207 QSIPSSQQYGLVLTRPSFLTGSYLQSPYGPPMVLPP--GMVPYSGWNPYQASLSAMPSPG 264

Query: 248 S--IAGSNLIY-----SSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKY 300
           +    GS+ IY     S       G    +   +++S+  P+RPDQP+C+Y+M TG CK+
Sbjct: 265 TQPSIGSSSIYGLTPLSPSATAYTGTYQSVPSSNSTSKEFPQRPDQPECQYFMRTGDCKF 324

Query: 301 GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 354
           G+ C++HHP + +       +  +GLP RPG A C++++ +GICKFGP C+FDH
Sbjct: 325 GSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDH 378


>sp|Q9STM4|C3H43_ARATH Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis
           thaliana GN=At3g48440 PE=1 SV=1
          Length = 448

 Score =  244 bits (624), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 132/324 (40%), Positives = 184/324 (56%), Gaps = 26/324 (8%)

Query: 44  YPARPGEPDCLFYRRTGLCGYGSNCRFNHPA----YAAQGAQYREELPE--RNGQPDCGY 97
           YP RPG  DC FY RTG C +GS+C+FNHP       A+  + RE+  +  + G  DC Y
Sbjct: 107 YPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLIDCKY 166

Query: 98  YLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACK 156
           Y +TG CKYG TC+++H   ++G A     N LGLP+R  E  CPYYMR GSCK+G  CK
Sbjct: 167 YFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGAECK 226

Query: 157 FHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQS 216
           F+HP P+++G     +   + G    +  P +  Q   S  +WS  R       + GT  
Sbjct: 227 FNHPDPTTIGGTDSPSFRGNNGVSIGTFSPKATFQ--ASSTSWSSPR------HVNGTSP 278

Query: 217 YMPLIVSPSQGIVPA-PGWNTYMGNI-----GPLSPTSIAGSNLIYSSRNQGDLGAGAQM 270
           ++P+++S + G+    P WN Y  ++     G  SP++   + L+ +S  +  +      
Sbjct: 279 FIPVMLSQTHGVTSQNPEWNGYQASVYSSERGVFSPST---TYLMNNSSAETSMLLSQYR 335

Query: 271 HILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRP 330
           H + A  +  PERPDQP+C YYM TG CK+  +CK+HHPK R+ +     +   GLP RP
Sbjct: 336 HQMPA--EEFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRP 393

Query: 331 GQAICSNYSMYGICKFGPTCRFDH 354
            Q IC+ YS YGICKFGP CRFDH
Sbjct: 394 DQNICTYYSRYGICKFGPACRFDH 417



 Score = 73.9 bits (180), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 42/68 (61%)

Query: 288 DCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFG 347
           DC+YY  TG CKYG  C+F+H   +   ++A  +  LGLP RPG+  C  Y   G CK+G
Sbjct: 163 DCKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYG 222

Query: 348 PTCRFDHP 355
             C+F+HP
Sbjct: 223 AECKFNHP 230



 Score = 40.8 bits (94), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 327 PSRPGQAICSNYSMYGICKFGPTCRFDHPYA 357
           P RPG   CS Y   G CKFG +C+F+HP A
Sbjct: 108 PVRPGAEDCSFYMRTGSCKFGSSCKFNHPLA 138


>sp|Q5RJC5|C3H67_ARATH Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis
           thaliana GN=At5g63260 PE=2 SV=2
          Length = 435

 Score =  242 bits (618), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 135/360 (37%), Positives = 192/360 (53%), Gaps = 35/360 (9%)

Query: 11  AVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRF 70
           +V   + +    A++     + +EG        YP RP   DC FY RTG C YGS+C+F
Sbjct: 65  SVPQGNVETDSRALFGSDQKEEEEGSEKRMMMVYPVRPDSEDCSFYMRTGSCKYGSSCKF 124

Query: 71  NHPA-----YAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPV- 124
           NHP         +  + R+E  E     +C YY +TG CKYG +C++ H K+ N    V 
Sbjct: 125 NHPVRRKLQIGRERVRERDEDVENPKLMECKYYFRTGGCKYGESCRFSHMKEHNSPASVP 184

Query: 125 SFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLG-TALPLTGNASLGSMGSS 183
             N LGLP+R  EK CP+YMR GSCKFG  CKF+HP P+++G    PL      G+ G S
Sbjct: 185 ELNFLGLPIRPGEKECPFYMRNGSCKFGSDCKFNHPDPTAIGGVDSPLY----RGNNGGS 240

Query: 184 VLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQS--YMPLIVSPSQGIVP-APGWNTYMGN 240
             P +        P+ +   +   +  + GT +  ++P +   S+G+ P A  WN Y  +
Sbjct: 241 FSPKA--------PSQASSTSWSSTRHMNGTGTAPFIPSMFPHSRGVTPQASDWNGYQAS 292

Query: 241 IG------PLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMN 294
                   PL+P+S   +N +  +       +    +    S +  PERPDQP+C YY+ 
Sbjct: 293 SAYPPERSPLAPSSYQVNNSLAET-------SSFSQYQHQMSVEEFPERPDQPECTYYLK 345

Query: 295 TGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 354
           TG CK+   CK+HHPK R+ + AA +    GLP RP Q++C++YS YGICKFGP CRFDH
Sbjct: 346 TGDCKFKYKCKYHHPKNRLPKQAAFSFNDKGLPLRPDQSMCTHYSRYGICKFGPACRFDH 405



 Score = 95.9 bits (237), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 53/83 (63%), Gaps = 1/83 (1%)

Query: 84  EELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR-NGAGPVSFNILGLPMRQDEKSCPY 142
           EE PER  QP+C YYLKTG CK+   CKYHHPK+R       SFN  GLP+R D+  C +
Sbjct: 329 EEFPERPDQPECTYYLKTGDCKFKYKCKYHHPKNRLPKQAAFSFNDKGLPLRPDQSMCTH 388

Query: 143 YMRTGSCKFGVACKFHHPQPSSL 165
           Y R G CKFG AC+F H  P + 
Sbjct: 389 YSRYGICKFGPACRFDHSIPPTF 411



 Score = 76.6 bits (187), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 44/74 (59%)

Query: 282 ERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMY 341
           E P   +C+YY  TG CKYG  C+F H KE  + ++   +  LGLP RPG+  C  Y   
Sbjct: 147 ENPKLMECKYYFRTGGCKYGESCRFSHMKEHNSPASVPELNFLGLPIRPGEKECPFYMRN 206

Query: 342 GICKFGPTCRFDHP 355
           G CKFG  C+F+HP
Sbjct: 207 GSCKFGSDCKFNHP 220



 Score = 35.4 bits (80), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 324 LGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 355
           +  P RP    CS Y   G CK+G +C+F+HP
Sbjct: 96  MVYPVRPDSEDCSFYMRTGSCKYGSSCKFNHP 127


>sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp.
           japonica GN=Os01g0257400 PE=2 SV=1
          Length = 466

 Score =  240 bits (613), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 164/405 (40%), Positives = 215/405 (53%), Gaps = 68/405 (16%)

Query: 20  IEEAIWRLKIHDNQEGGGVAQAS-PYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQ 78
           +EE++WR+ +     GGG A A+   P RPGE DC++Y RTG CGYG NCR+NHP   A 
Sbjct: 23  LEESMWRMGLGGGGGGGGEAVAAGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDRAA 82

Query: 79  GA--------QYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILG 130
            A         +  E PER GQP C YY+K GTCK+GS CKY HP++      V  N  G
Sbjct: 83  AAVLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPRE-GSVQAVMLNSSG 141

Query: 131 LPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLP---S 187
            P+R  EK C YY++TG CKFG  CKFHHP+         + G +   +M   V P   S
Sbjct: 142 YPLRSGEKDCTYYVKTGHCKFGSTCKFHHPE---------IGGVSETPNMYPPVQPQPIS 192

Query: 188 SGLQYAGSLPTWSLQRAPYL-SSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSP 246
           S   Y   L  W + R P L  S L G  SY P+++ PS  +VP  GWN Y   I P++ 
Sbjct: 193 SSHPYQ-HLAGWQMGRPPVLPGSFLSG--SYPPMML-PST-VVPMQGWNPY---ISPVNQ 244

Query: 247 TSIAGSNL------IYSSRNQGDLGA---GAQMHILSASSQN---------LPERPDQPD 288
            + AG +        Y   +QG   A   G+Q   LS+S+            P RP QP+
Sbjct: 245 VASAGGHQTVQAGPFYGLSHQGPSAAVTYGSQYAPLSSSTMPSSSSKQEPAFPARPGQPE 304

Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 348
           C+YY+ TG+CK+G+ CK+HHP+      +   + PLGLP RPG   C+ Y+ +G CKFGP
Sbjct: 305 CQYYLKTGSCKFGSACKYHHPQYLNTPKSNCMLSPLGLPLRPGSQPCAYYTQHGFCKFGP 364

Query: 349 TCRFDHPY-----------------AGYPINYGLS--LPPLSILD 374
           TC+FDHP                  A YP+NY ++   PP S  D
Sbjct: 365 TCKFDHPMGTLSYSPSASSITDLPIAPYPLNYAVAPVAPPSSSSD 409


>sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp.
           japonica GN=Os01g0258700 PE=2 SV=2
          Length = 476

 Score =  234 bits (596), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 144/353 (40%), Positives = 193/353 (54%), Gaps = 38/353 (10%)

Query: 45  PARPGEPDCLFYRRTGLCGYGSNCRFNHP-----AYAAQGAQYREEL--PERNGQPDCGY 97
           P RPGE DC++Y RTG CG+G  CR+NHP          GA+    L  PER GQP C Y
Sbjct: 57  PERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEY 116

Query: 98  YLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKF 157
           Y+KTGTCK+G+ CKYHHPK      PV  N  G P+R  EK C YYM+TG CKFG  CKF
Sbjct: 117 YMKTGTCKFGTNCKYHHPKQDGAVLPVMLNNSGFPIRLGEKECSYYMKTGQCKFGTTCKF 176

Query: 158 HHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYL-SSRLQGTQS 216
           HHP+    G  +P+T          S+  +S   YA SL  W + R P +  S + G  S
Sbjct: 177 HHPE---FG-GVPMTPGIYPPLQSPSI--ASPHPYA-SLANWQMGRPPVVPGSYIPG--S 227

Query: 217 YMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNL----IYSSRNQGDLG----AGA 268
           Y P+++  S G++P  GW+ Y  ++ P+  +  A  N+    +Y   + G        G 
Sbjct: 228 YTPMML--SSGMIPLQGWSPYPASVNPVV-SGGAQQNVQAGPVYGMGHHGSSSTIAYGGP 284

Query: 269 QMHILSASSQN--------LPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASN 320
            +   S++ Q+         PERP QPDC+YYM TG CK+GA CK+HHP+E  A  +   
Sbjct: 285 YVPYASSTGQSSNNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYM 344

Query: 321 IGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSIL 373
           +  L LP RPG   C+ Y+  G C++G  C++DHP     + Y  S  PLS +
Sbjct: 345 VNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHPMGT--LGYSPSALPLSDM 395



 Score = 75.1 bits (183), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 4/94 (4%)

Query: 44  YPARPGEPDCLFYRRTGLCGYGSNCRFNHP-AYAAQGAQYREE---LPERNGQPDCGYYL 99
           +P RPG+PDC +Y RTG C +G+ C+++HP   +A  + Y      LP R G   C YY 
Sbjct: 304 FPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYA 363

Query: 100 KTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPM 133
           + G C+YG  CKY HP    G  P +  +  +P+
Sbjct: 364 QNGYCRYGVACKYDHPMGTLGYSPSALPLSDMPI 397


>sp|Q941Q3|C3H37_ARATH Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis
           thaliana GN=HUA1 PE=1 SV=1
          Length = 524

 Score =  187 bits (474), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/348 (34%), Positives = 172/348 (49%), Gaps = 55/348 (15%)

Query: 44  YPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQG---------AQYREELPERNGQPD 94
           YP R GE DC  Y +T  C +G +CRF+HP +  +G             EE PER G+PD
Sbjct: 171 YPQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEYPERPGEPD 230

Query: 95  CGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVA 154
           C YY+KT  CKYGS CK++HP++       + +   LP R  E  C +YM+TG CKFG++
Sbjct: 231 CPYYIKTQRCKYGSKCKFNHPREEAAVSVETQD--SLPERPSEPMCTFYMKTGKCKFGLS 288

Query: 155 CKFHHPQ----PSS---LGTALPLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQ-RAPY 206
           CKFHHP+    PSS   +G+++ LT      +        +    +  LP  S +   P+
Sbjct: 289 CKFHHPKDIQLPSSSQDIGSSVGLTSEPDATNNPHVTFTPALYHNSKGLPVRSGEVDCPF 348

Query: 207 L----SSRLQGT--------QSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNL 254
                S +   T         +++P     +  +V +   NT   N+G ++P     +  
Sbjct: 349 YLKTGSCKYGATCRYNHPERTAFIPQAAGVNYSLVSS---NTANLNLGLVTP-----ATS 400

Query: 255 IYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIA 314
            Y +  Q  LG      ++SA+    P+RP Q +C YYM TG CK+G  CKFHHP +R++
Sbjct: 401 FYQTLTQPTLG------VISAT---YPQRPGQSECDYYMKTGECKFGERCKFHHPADRLS 451

Query: 315 -------QSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 355
                  Q     +   G P R G   C  Y   G CK+G TC+FDHP
Sbjct: 452 AMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHP 499



 Score =  117 bits (294), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 80/167 (47%), Gaps = 46/167 (27%)

Query: 45  PARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAAQGAQYREEL--------------- 86
           P R GE DC FY +TG C YG+ CR+NHP   A+  Q A     L               
Sbjct: 338 PVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQAAGVNYSLVSSNTANLNLGLVTP 397

Query: 87  --------------------PERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGP--- 123
                               P+R GQ +C YY+KTG CK+G  CK+HHP DR  A     
Sbjct: 398 ATSFYQTLTQPTLGVISATYPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQA 457

Query: 124 -----VSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSL 165
                V  ++ G P R+   +CPYYM+TG+CK+G  CKF HP P  +
Sbjct: 458 PQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPPPGEV 504



 Score = 79.3 bits (194), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 12/90 (13%)

Query: 37  GVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA--------YAAQGAQYREEL-- 86
           GV  A+ YP RPG+ +C +Y +TG C +G  C+F+HPA         A Q    +  L  
Sbjct: 411 GVISAT-YPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAG 469

Query: 87  -PERNGQPDCGYYLKTGTCKYGSTCKYHHP 115
            P R G  +C YY+KTGTCKYG+TCK+ HP
Sbjct: 470 YPRREGALNCPYYMKTGTCKYGATCKFDHP 499


>sp|Q2QTY2|C3H65_ORYSJ Zinc finger CCCH domain-containing protein 65 OS=Oryza sativa
           subsp. japonica GN=Os12g0278800 PE=2 SV=1
          Length = 529

 Score =  181 bits (460), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 103/286 (36%), Positives = 150/286 (52%), Gaps = 14/286 (4%)

Query: 83  REELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG---AGPVSFNILGLPMRQDEKS 139
           +E + E + Q +C YY   G CK+G  CKY H   + G   A  V  N LGLP+R  EK 
Sbjct: 231 KEFISEGSSQEECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFLGLPLRPGEKE 290

Query: 140 CPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSLP-- 197
           CPYYMRTGSCK+   CKFHHP PS++ +  P   + +  +    V  SS    A   P  
Sbjct: 291 CPYYMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQPNASIWPDQ 350

Query: 198 -TWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTY-MGNIGPLSPTSIAGSNLI 255
            T +    P+++     + SY   ++ P QG+ P P WN Y    + P  P  +   +  
Sbjct: 351 RTVNEHHVPFIAP----SPSYSAGML-PPQGMYPPPEWNGYHQVPLNPYYPPGVPFQHFP 405

Query: 256 YSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQ 315
            +  N     A          S+  PERP QP+C++++ +G CK+   CK+HHP+  +  
Sbjct: 406 AAPINHPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPP 465

Query: 316 SAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI 361
           + A  + PLGLP +P Q +C+ Y  YG+CKFGP C ++HP+   P+
Sbjct: 466 AGA--LSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYNHPFNFSPV 509



 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 44  YPARPGEPDCLFYRRTGLCGYGSNCRFNHP--AYAAQGAQYREELPERNGQPDCGYYLKT 101
           YP RPG+P+C  + ++G C +   C+++HP       GA     LP +  QP C YY + 
Sbjct: 430 YPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAGALSPLGLPIKPDQPVCTYYGRY 489

Query: 102 GTCKYGSTCKYHHP 115
           G CK+G  C Y+HP
Sbjct: 490 GVCKFGPACAYNHP 503



 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 8/77 (10%)

Query: 52  DCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREE-------LPERNGQPDCGYYLKTGTC 104
           +C +Y   G C +G  C++ H     +G    E+       LP R G+ +C YY++TG+C
Sbjct: 242 ECKYYSTPGGCKFGKACKYLH-RDGKEGKTDAEKVDLNFLGLPLRPGEKECPYYMRTGSC 300

Query: 105 KYGSTCKYHHPKDRNGA 121
           KY + CK+HHP   N A
Sbjct: 301 KYATNCKFHHPDPSNVA 317



 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 83  REELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119
           R   P R G+PDC YY+K G+C++G  CK++HP  + 
Sbjct: 102 RPRFPRRPGEPDCTYYVKFGSCRFGMKCKFNHPARKK 138



 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 276 SSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKER 312
           S    P RP +PDC YY+  G+C++G  CKF+HP  +
Sbjct: 101 SRPRFPRRPGEPDCTYYVKFGSCRFGMKCKFNHPARK 137



 Score = 45.4 bits (106), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 22/29 (75%)

Query: 45  PARPGEPDCLFYRRTGLCGYGSNCRFNHP 73
           P RPGE +C +Y RTG C Y +NC+F+HP
Sbjct: 283 PLRPGEKECPYYMRTGSCKYATNCKFHHP 311



 Score = 43.1 bits (100), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 131 LPMRQDEKSCPYYMRTGSCKFGVACKFHHP 160
            P R  E  C YY++ GSC+FG+ CKF+HP
Sbjct: 105 FPRRPGEPDCTYYVKFGSCRFGMKCKFNHP 134



 Score = 40.0 bits (92), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 326 LPSRPGQAICSNYSMYGICKFGPTCRFDHP 355
            P RPG+  C+ Y  +G C+FG  C+F+HP
Sbjct: 105 FPRRPGEPDCTYYVKFGSCRFGMKCKFNHP 134


>sp|Q5ZDJ6|C3H8_ORYSJ Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp.
           japonica GN=Os01g0616400 PE=2 SV=2
          Length = 462

 Score =  172 bits (436), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 170/368 (46%), Gaps = 77/368 (20%)

Query: 44  YPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQG---------AQYREELPERNGQPD 94
           YP RPGE DC FY  T  C +G +C+F+HP +  +G         A   E  PE+ G+PD
Sbjct: 102 YPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEQAANVEESYPEQEGEPD 161

Query: 95  CGYYLKTGTCKYGSTCKYHHPKDRNGA---GPVSFNIL-----GLPMRQDEKSCPYYMRT 146
           C +++KTG CK+GS CK++HPK++  A   G  +   L      LP+R  E  C +Y +T
Sbjct: 162 CPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRPSEPLCSFYAKT 221

Query: 147 GSCKFGVACKFHHPQ----PSSLG---TALPLTGNASLGSMGSSV-----LPSSGLQYAG 194
           G CKF   CKF+HP+    PSS     +A+ + G   +GS   SV      P +  Q   
Sbjct: 222 GKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQTPVAAAQEFN 281

Query: 195 S--LPTWSLQ-RAPYL----SSRLQGTQSY---------MPLIVSPSQGIVPAPGWNTYM 238
           S  LP    +   P+     S +   T  +          PL +   Q I+P P      
Sbjct: 282 SKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPL--GQTILPTP------ 333

Query: 239 GNIGPLSPTSIAGSNLIYSSRN--QGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTG 296
                        S L+ SS N  QG     A M +        P+RP    C +YM TG
Sbjct: 334 ------------ESMLLNSSANFMQGFDFHAAHMPV-GPGPVTYPQRPGATVCDFYMKTG 380

Query: 297 TCKYGADCKFHHPKERIAQSAASNIGP---------LGLPSRPGQAICSNYSMYGICKFG 347
            CK+   CKFHHP +R A   ++N  P          GLP R    +C+ Y   G+CKFG
Sbjct: 381 FCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFG 440

Query: 348 PTCRFDHP 355
             C+FDHP
Sbjct: 441 MQCKFDHP 448



 Score =  133 bits (334), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 133/328 (40%), Gaps = 68/328 (20%)

Query: 44  YPARPGEPDCLFYRRTGLCGYGSNCRFNHP-----AYAAQGAQYREE------LPERNGQ 92
           YP + GEPDC F+ +TG C +GS C+FNHP     A A+     +        LP R  +
Sbjct: 153 YPEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRPSE 212

Query: 93  PDCGYYLKTGTCKYGSTCKYHHPKDR----------------------NGAGPVS----- 125
           P C +Y KTG CK+ + CK++HPKD                       + A  VS     
Sbjct: 213 PLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQT 272

Query: 126 -------FNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLG 178
                  FN  GLPMR  E  CP+YM+ GSCKFG  C+F+HP    L   LPL       
Sbjct: 273 PVAAAQEFNSKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPL------- 325

Query: 179 SMGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYM 238
             G ++LP+          +  L  +           ++MP  V P     P     T  
Sbjct: 326 --GQTILPTPE--------SMLLNSSANFMQGFDFHAAHMP--VGPGPVTYPQRPGATVC 373

Query: 239 GNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQ----NLPERPDQPDCRYYMN 294
                      A     +   ++      A       S Q     LP R D   C +YM 
Sbjct: 374 DFYMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMK 433

Query: 295 TGTCKYGADCKFHHPKERIAQSAASNIG 322
           TG CK+G  CKF HP  + A +  SN G
Sbjct: 434 TGVCKFGMQCKFDHPPPQEAIAKVSNSG 461



 Score = 91.7 bits (226), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 107/287 (37%), Gaps = 83/287 (28%)

Query: 132 PMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQ 191
           P R  EK C +YM T +CKFG +CKF HPQ                       +P  G+ 
Sbjct: 103 PQRPGEKDCAFYMMTRTCKFGGSCKFDHPQ----------------------WVPEGGI- 139

Query: 192 YAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAG 251
                P W  Q A          +SY      P Q   P      +    G     S   
Sbjct: 140 -----PNWKEQAA-------NVEESY------PEQEGEPD---CPFFMKTGKCKFGSKCK 178

Query: 252 SNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKE 311
            N      N    G     H++ A S  LP RP +P C +Y  TG CK+ A CKF+HPK+
Sbjct: 179 FNHPKEKVNALASGNTNDKHLI-ADSSILPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKD 237

Query: 312 ---------------------------------RIAQSAASNIGPLGLPSRPGQAICSNY 338
                                            +   +AA      GLP RPG+  C  Y
Sbjct: 238 IEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQTPVAAAQEFNSKGLPMRPGEVDCPFY 297

Query: 339 SMYGICKFGPTCRFDHP---YAGYPINYGLSLPPLSILDSSLMNHQA 382
              G CKFG TCRF+HP      +P+  G ++ P    +S L+N  A
Sbjct: 298 MKMGSCKFGSTCRFNHPDRLVLNFPLPLGQTILPTP--ESMLLNSSA 342



 Score = 63.5 bits (153), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 17/94 (18%)

Query: 273 LSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHP-----------KERIAQSAASNI 321
           L +S    P+RP + DC +YM T TCK+G  CKF HP           KE+ A    S  
Sbjct: 95  LESSLPIYPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEQAANVEES-- 152

Query: 322 GPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 355
                P + G+  C  +   G CKFG  C+F+HP
Sbjct: 153 ----YPEQEGEPDCPFFMKTGKCKFGSKCKFNHP 182


>sp|Q5Z5Q3|C3H43_ORYSJ Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa
           subsp. japonica GN=Os06g0520600 PE=2 SV=1
          Length = 711

 Score =  121 bits (303), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 83/159 (52%), Gaps = 26/159 (16%)

Query: 44  YPARPGEPDCLFYRRTGLCGYGSNCRFNHP----AYAAQGAQYREELPERNGQPDCGYYL 99
           +P RPGEPDC +Y + G C +G +C +NHP     + A   +  E+ P R G+PDC YY+
Sbjct: 41  HPRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFPRRPGEPDCSYYV 100

Query: 100 KTGTCKYGSTCKYHHP----------------------KDRNGAGPVSFNILGLPMRQDE 137
           K G+CK+G  C+++HP                      + ++    V  N+LGLP+R   
Sbjct: 101 KFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSKVEQVKLNVLGLPLRPGT 160

Query: 138 KSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNAS 176
             C YYM  G CKFG  CKF HP P S      ++ NA+
Sbjct: 161 GLCSYYMNRGICKFGTNCKFDHPDPGSDHEKWVVSSNAN 199



 Score = 83.2 bits (204), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 53/103 (51%), Gaps = 21/103 (20%)

Query: 277 SQNLPERPDQPDCRYYMNTGTCKYGADCKFHHP---------------------KERIAQ 315
           ++  P RP +PDC YY+  G+CK+G +C+F+HP                      E  ++
Sbjct: 84  AEQFPRRPGEPDCSYYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSK 143

Query: 316 SAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 358
                +  LGLP RPG  +CS Y   GICKFG  C+FDHP  G
Sbjct: 144 VEQVKLNVLGLPLRPGTGLCSYYMNRGICKFGTNCKFDHPDPG 186



 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 2/115 (1%)

Query: 48  PGEPDCLFYRRT-GLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKY 106
           P + D  + R T  + G G       P  A +  +  E+ P R G+PDC YY+K G+CK+
Sbjct: 2   PQDDDWFWGRPTPVVVGDGETTSKPKPPVAGKTKKVEEQHPRRPGEPDCSYYVKFGSCKF 61

Query: 107 GSTCKYHHPKDRNGAGPVSFN-ILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHP 160
           G +C Y+HP  R   G          P R  E  C YY++ GSCKFG+ C+F+HP
Sbjct: 62  GISCVYNHPDPRPQHGADDKKPAEQFPRRPGEPDCSYYVKFGSCKFGMNCRFNHP 116



 Score = 78.2 bits (191), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 43/75 (57%)

Query: 281 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSM 340
           P RP +PDC YY+  G+CK+G  C ++HP  R    A         P RPG+  CS Y  
Sbjct: 42  PRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFPRRPGEPDCSYYVK 101

Query: 341 YGICKFGPTCRFDHP 355
           +G CKFG  CRF+HP
Sbjct: 102 FGSCKFGMNCRFNHP 116



 Score = 73.9 bits (180), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 25/100 (25%)

Query: 41  ASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP------------------AYAAQGAQY 82
           A  +P RPGEPDC +Y + G C +G NCRFNHP                   +  +G   
Sbjct: 84  AEQFPRRPGEPDCSYYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSK 143

Query: 83  REE-------LPERNGQPDCGYYLKTGTCKYGSTCKYHHP 115
            E+       LP R G   C YY+  G CK+G+ CK+ HP
Sbjct: 144 VEQVKLNVLGLPLRPGTGLCSYYMNRGICKFGTNCKFDHP 183


>sp|Q0DBW8|C3H42_ORYSJ Zinc finger CCCH domain-containing protein 42 OS=Oryza sativa
           subsp. japonica GN=Os06g0519400 PE=2 SV=1
          Length = 279

 Score =  114 bits (286), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 76/152 (50%), Gaps = 22/152 (14%)

Query: 34  EGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQP 93
           E     +   YP RPG PDC +Y   G C +G  C +NHPA  A G   + E P+R G+ 
Sbjct: 66  EPKAAVEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKHAGGCD-KLEHPQRPGEH 124

Query: 94  DCGYYLKTGTCKYGSTCKYHHPKDR---------------------NGAGPVSFNILGLP 132
           DC +YL+ G CKYG  C+++HP DR                     + A  V  N LGLP
Sbjct: 125 DCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVKLNFLGLP 184

Query: 133 MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSS 164
           +R     C YYM  G CKFG  CKFHHP   S
Sbjct: 185 LRPGTGLCSYYMNRGICKFGSNCKFHHPNSGS 216



 Score = 80.1 bits (196), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 34/144 (23%)

Query: 281 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAA--------------------SN 320
           P+RP + DC +Y+  G CKYG +C+F+HP +R+ Q                         
Sbjct: 118 PQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVK 177

Query: 321 IGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY------------PINYGLSLP 368
           +  LGLP RPG  +CS Y   GICKFG  C+F HP +G              I+ G+++ 
Sbjct: 178 LNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPNSGSGHEKWDGSLQTNQISSGVNI- 236

Query: 369 PLSILDSSLMNHQAISATHSIETS 392
             S+LD   +N Q + +    + S
Sbjct: 237 -YSVLDHGELNEQPVPSKDDFQVS 259



 Score = 75.5 bits (184), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 55/118 (46%), Gaps = 25/118 (21%)

Query: 27  LKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP------------- 73
           L  H  +  GG  +   +P RPGE DCL Y R G C YG NCRFNHP             
Sbjct: 101 LYNHPAKHAGGCDKLE-HPQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPW 159

Query: 74  ----AYAAQGAQYREE-------LPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG 120
                + ++G    E        LP R G   C YY+  G CK+GS CK+HHP   +G
Sbjct: 160 KACHCHHSEGKSEAEHVKLNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPNSGSG 217



 Score = 71.6 bits (174), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 5/78 (6%)

Query: 278 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSN 337
           Q  P RP  PDC YY+  G+CK+G  C ++HP +      A     L  P RPG+  C +
Sbjct: 74  QEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKH-----AGGCDKLEHPQRPGEHDCLH 128

Query: 338 YSMYGICKFGPTCRFDHP 355
           Y  +G CK+G  CRF+HP
Sbjct: 129 YLRFGRCKYGMNCRFNHP 146



 Score = 47.0 bits (110), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 22/30 (73%)

Query: 280 LPERPDQPDCRYYMNTGTCKYGADCKFHHP 309
           LP RP    C YYMN G CK+G++CKFHHP
Sbjct: 183 LPLRPGTGLCSYYMNRGICKFGSNCKFHHP 212



 Score = 37.4 bits (85), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 321 IGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 355
           + P   P RPG   CS Y  +G CKFG  C ++HP
Sbjct: 71  VEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHP 105


>sp|Q3ECU8|C3H13_ARATH Zinc finger CCCH domain-containing protein 13 OS=Arabidopsis
           thaliana GN=At1g48195 PE=4 SV=1
          Length = 82

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 51/79 (64%)

Query: 276 SSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAIC 335
           S +  PERP +P+C YY+ TG C    +CK+HHPK          +   GLP RPGQAIC
Sbjct: 2   SEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAIC 61

Query: 336 SNYSMYGICKFGPTCRFDH 354
            +YS +GIC+ GPTC+FDH
Sbjct: 62  PHYSRFGICRSGPTCKFDH 80



 Score = 78.6 bits (192), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 84  EELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGP-VSFNILGLPMRQDEKSCPY 142
           E+ PER G+P+C YYL+TG C     CKYHHPK+   + P  + N  GLP+R  +  CP+
Sbjct: 4   EKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPH 63

Query: 143 YMRTGSCKFGVACKFHH 159
           Y R G C+ G  CKF H
Sbjct: 64  YSRFGICRSGPTCKFDH 80



 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 44  YPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAA----QGAQYREELPERNGQPDCGYYL 99
           +P RPGEP+C +Y RTG C    NC+++HP        Q     + LP R GQ  C +Y 
Sbjct: 6   FPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPHYS 65

Query: 100 KTGTCKYGSTCKYHH 114
           + G C+ G TCK+ H
Sbjct: 66  RFGICRSGPTCKFDH 80



 Score = 37.7 bits (86), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 131 LPMRQDEKSCPYYMRTGSCKFGVACKFHHPQ 161
            P R  E  C YY+RTG+C     CK+HHP+
Sbjct: 6   FPERPGEPECSYYLRTGNCYLKQNCKYHHPK 36


>sp|Q9C7P1|C3H10_ARATH Putative zinc finger CCCH domain-containing protein 10
           OS=Arabidopsis thaliana GN=At1g29600/At1g29610 PE=2 SV=2
          Length = 389

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 13/81 (16%)

Query: 41  ASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQP-DCGYYL 99
           +S YP RPGE +CLFY +  LC +GS C +NHP          +E+P R G+  DC    
Sbjct: 125 SSAYPVRPGEDNCLFYMKNHLCEWGSECCYNHPPL--------QEIPCRIGKKLDC---- 172

Query: 100 KTGTCKYGSTCKYHHPKDRNG 120
           K G CK GS C ++HPK+R+G
Sbjct: 173 KAGACKRGSNCPFNHPKERDG 193



 Score = 44.3 bits (103), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 17/86 (19%)

Query: 87  PERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEK-SCPYYMR 145
           P R G+ +C +Y+K   C++GS C Y+HP            +  +P R  +K  C    +
Sbjct: 129 PVRPGEDNCLFYMKNHLCEWGSECCYNHPP-----------LQEIPCRIGKKLDC----K 173

Query: 146 TGSCKFGVACKFHHPQPSSLGTALPL 171
            G+CK G  C F+HP+    G +LP+
Sbjct: 174 AGACKRGSNCPFNHPKERD-GDSLPM 198



 Score = 42.7 bits (99), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 33/117 (28%)

Query: 252 SNLIYSSRNQGDLGAGAQMH-----------ILSASSQNLPERPDQPDCRYYMNTGTCKY 300
           S L   +R Q   G+ ++M            +LS++    P RP + +C +YM    C++
Sbjct: 92  SRLWQRARTQDRRGSESRMMFDGRTQWSHAPVLSSA---YPVRPGEDNCLFYMKNHLCEW 148

Query: 301 GADCKFHHPKERIAQSAASNIGPL-GLPSRPGQAI-CSNYSMYGICKFGPTCRFDHP 355
           G++C ++HP             PL  +P R G+ + C      G CK G  C F+HP
Sbjct: 149 GSECCYNHP-------------PLQEIPCRIGKKLDCK----AGACKRGSNCPFNHP 188


>sp|Q9C7P4|C3H9_ARATH Putative zinc finger CCCH domain-containing protein 9
           OS=Arabidopsis thaliana GN=At1g29570 PE=4 SV=1
          Length = 321

 Score = 62.0 bits (149), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 43/92 (46%), Gaps = 27/92 (29%)

Query: 33  QEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQ 92
           Q    + Q+SPYP RPG+ DC FY + GLC Y S+CRFNHP    Q      ELP R   
Sbjct: 41  QSKERMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQ------ELPVR--- 91

Query: 93  PDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPV 124
                      CK        H  DRN A P+
Sbjct: 92  ----------ICK--------HIMDRNVAEPM 105



 Score = 42.4 bits (98), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 23/32 (71%)

Query: 281 PERPDQPDCRYYMNTGTCKYGADCKFHHPKER 312
           P RP + DC++Y+  G C+Y + C+F+HP +R
Sbjct: 53  PVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQR 84



 Score = 39.3 bits (90), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 7/46 (15%)

Query: 310 KERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 355
           KER+ QS+         P RPG+  C  Y   G+C++  +CRF+HP
Sbjct: 43  KERMRQSSP-------YPVRPGKKDCQFYLKNGLCRYRSSCRFNHP 81



 Score = 36.2 bits (82), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 21/29 (72%)

Query: 132 PMRQDEKSCPYYMRTGSCKFGVACKFHHP 160
           P+R  +K C +Y++ G C++  +C+F+HP
Sbjct: 53  PVRPGKKDCQFYLKNGLCRYRSSCRFNHP 81


>sp|A3CEM4|C3H64_ORYSJ Putative zinc finger CCCH domain-containing protein 64 OS=Oryza
           sativa subsp. japonica GN=Os12g0129500 PE=4 SV=2
          Length = 527

 Score = 52.4 bits (124), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 235 NTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMN 294
           N + G +  ++   IAG ++   S     + AG  + +L    Q  PERP +P CRYYM 
Sbjct: 167 NAHDGILDDINCAQIAGKHVGDHSNCANVIKAGV-ISLLGKLVQ-YPERPGEPFCRYYMK 224

Query: 295 TGTCKYGADCKFHHPKERIAQSAASNI 321
            G CK+   CK++HPK+R +    + I
Sbjct: 225 FGECKHMTFCKYNHPKDRFSCKTTNTI 251



 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 25/32 (78%)

Query: 87  PERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR 118
           PER G+P C YY+K G CK+ + CKY+HPKDR
Sbjct: 211 PERPGEPFCRYYMKFGECKHMTFCKYNHPKDR 242



 Score = 42.0 bits (97), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 38  VAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP 73
           + +   YP RPGEP C +Y + G C + + C++NHP
Sbjct: 204 LGKLVQYPERPGEPFCRYYMKFGECKHMTFCKYNHP 239



 Score = 36.6 bits (83), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 121 AGPVSF--NILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQ 161
           AG +S    ++  P R  E  C YYM+ G CK    CK++HP+
Sbjct: 198 AGVISLLGKLVQYPERPGEPFCRYYMKFGECKHMTFCKYNHPK 240



 Score = 34.7 bits (78), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 313 IAQSAASNIGPL-GLPSRPGQAICSNYSMYGICKFGPTCRFDHP 355
           I     S +G L   P RPG+  C  Y  +G CK    C+++HP
Sbjct: 196 IKAGVISLLGKLVQYPERPGEPFCRYYMKFGECKHMTFCKYNHP 239


>sp|Q3ED78|C3H7_ARATH Zinc finger CCCH domain-containing protein 7 OS=Arabidopsis
           thaliana GN=At1g21570 PE=1 SV=1
          Length = 470

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 51/124 (41%), Gaps = 24/124 (19%)

Query: 60  GLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119
           GLC   +NC+  H             +PER   PDC YYL+ G C     C Y H    N
Sbjct: 280 GLCA-NANCKLTHKV-----------IPER--MPDCSYYLQ-GLCN-NEACPYRHVHV-N 322

Query: 120 GAGPVSFNIL-GLPMRQDE------KSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLT 172
              P+    L G     DE       +CP +  TGSC  G+ CK HHP+  S G     T
Sbjct: 323 PIAPICDGFLKGYCSEGDECRKKHSYNCPVFEATGSCSQGLKCKLHHPKNQSKGRKRKRT 382

Query: 173 GNAS 176
              S
Sbjct: 383 NEPS 386


>sp|P0CS64|YTH1_CRYNJ mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
           neoformans serotype D (strain JEC21 / ATCC MYA-565)
           GN=YTH1 PE=3 SV=1
          Length = 332

 Score = 46.2 bits (108), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 44/116 (37%), Gaps = 19/116 (16%)

Query: 53  CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
           C  Y R  LC  G NC + H                    P C +++K G C+ G  C Y
Sbjct: 99  CKHYLRN-LCKMGDNCEYTHDF-------------NLRTMPVCIWFVKQGKCELGGECLY 144

Query: 113 HHPKDRNGAGP---VSFNILG--LPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPS 163
            HP+DR    P     F +LG   P +   +        G C  G  CK  HP P+
Sbjct: 145 FHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRLCDAYAAGFCPDGKDCKLAHPSPN 200



 Score = 38.9 bits (89), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 287 PDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGL-PSRPGQAI----CSNYSMY 341
           P C +++  G C+ G +C + HP++R  +    N G   L P+ P + I    C  Y+  
Sbjct: 125 PVCIWFVKQGKCELGGECLYFHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRLCDAYAA- 183

Query: 342 GICKFGPTCRFDHPYAGYP 360
           G C  G  C+  HP    P
Sbjct: 184 GFCPDGKDCKLAHPSPNRP 202


>sp|P0CS65|YTH1_CRYNB mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
           neoformans serotype D (strain B-3501A) GN=YTH1 PE=3 SV=1
          Length = 332

 Score = 46.2 bits (108), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 44/116 (37%), Gaps = 19/116 (16%)

Query: 53  CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
           C  Y R  LC  G NC + H                    P C +++K G C+ G  C Y
Sbjct: 99  CKHYLRN-LCKMGDNCEYTHDF-------------NLRTMPVCIWFVKQGKCELGGECLY 144

Query: 113 HHPKDRNGAGP---VSFNILG--LPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPS 163
            HP+DR    P     F +LG   P +   +        G C  G  CK  HP P+
Sbjct: 145 FHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRLCDAYAAGFCPDGKDCKLAHPSPN 200



 Score = 38.9 bits (89), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 287 PDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGL-PSRPGQAI----CSNYSMY 341
           P C +++  G C+ G +C + HP++R  +    N G   L P+ P + I    C  Y+  
Sbjct: 125 PVCIWFVKQGKCELGGECLYFHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRLCDAYAA- 183

Query: 342 GICKFGPTCRFDHPYAGYP 360
           G C  G  C+  HP    P
Sbjct: 184 GFCPDGKDCKLAHPSPNRP 202


>sp|Q8BQZ5|CPSF4_MOUSE Cleavage and polyadenylation specificity factor subunit 4 OS=Mus
           musculus GN=Cpsf4 PE=2 SV=1
          Length = 211

 Score = 42.7 bits (99), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAA---SNIGPLGLPSRPGQAICSNYSMYGICK 345
           C++++  G CK G  C+F H  +          S  GPL       + IC NY + G C 
Sbjct: 68  CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGPLCRHRHTRRVICVNY-LVGFCP 125

Query: 346 FGPTCRFDHPYAGYPI 361
            GP+C+F HP    P+
Sbjct: 126 EGPSCKFMHPRFELPM 141



 Score = 35.8 bits (81), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 28/152 (18%)

Query: 16  SADNIEEAIWRLKIHDNQEGGGVAQASPYPA--RPGEPDCLFYRRTGLCGYGSNCRFNHP 73
           S D+I+   + L+I   Q+ G  AQ  P+P   + G   C F+ +   CG G  C F H 
Sbjct: 7   SVDHIK---FDLEIAVEQQLG--AQPLPFPGMDKSGAAVCEFFLKAA-CGKGGMCPFRHI 60

Query: 74  AYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPM 133
           +                    C ++L+ G CK G  C++ H  D        F     P+
Sbjct: 61  SGEKTVV--------------CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGPL 105

Query: 134 RQDEKS----CPYYMRTGSCKFGVACKFHHPQ 161
            +   +    C  Y+  G C  G +CKF HP+
Sbjct: 106 CRHRHTRRVICVNYL-VGFCPEGPSCKFMHPR 136


>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1
          Length = 325

 Score = 42.0 bits (97), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 14/69 (20%)

Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQ---AICSNYSMYGICK 345
           CR +  +G C+YGA C+F H            +G L  PSR  +    +C  + + G C 
Sbjct: 107 CRTFSESGRCRYGAKCQFAH-----------GLGELRQPSRHPKYKTELCHKFYLQGRCP 155

Query: 346 FGPTCRFDH 354
           +G  C F H
Sbjct: 156 YGSRCHFIH 164



 Score = 35.0 bits (79), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 12/81 (14%)

Query: 53  CLFYRRTGLCGYGSNCRFNHPA----YAAQGAQYREELPERNGQPDCGYYLKTGTCKYGS 108
           C  +  +G C YG+ C+F H        ++  +Y+ EL        C  +   G C YGS
Sbjct: 107 CRTFSESGRCRYGAKCQFAHGLGELRQPSRHPKYKTEL--------CHKFYLQGRCPYGS 158

Query: 109 TCKYHHPKDRNGAGPVSFNIL 129
            C + H    + A P   ++L
Sbjct: 159 RCHFIHNPSEDLAAPGHPHVL 179


>sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
           subunit-related protein 1 OS=Homo sapiens GN=ZRSR1 PE=2
           SV=2
          Length = 479

 Score = 42.0 bits (97), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 123 PVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLG 178
           PV F +    M +D  +CP+Y +TG+C+FG  C   H  P+S  T L  +   + G
Sbjct: 164 PVDFRV----MEKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFG 215


>sp|Q15696|U2AFM_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
           subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1
           SV=2
          Length = 482

 Score = 42.0 bits (97), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 123 PVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLG 178
           PV F +    M +D  +CP+Y +TG+C+FG  C   H  P+S  T L  +   + G
Sbjct: 159 PVDFRV----MEKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFG 210


>sp|P47979|ZFS1_SCHPO Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 /
           ATCC 24843) GN=zfs1 PE=1 SV=1
          Length = 404

 Score = 41.6 bits (96), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 348
           C+ +  +GTC+YG+ C+F H  + + +       P   P    +  C ++ MYG C +G 
Sbjct: 332 CKNWQISGTCRYGSKCQFAHGNQELKE-------PPRHPKYKSER-CRSFMMYGYCPYGL 383

Query: 349 TCRFDH 354
            C F H
Sbjct: 384 RCCFLH 389



 Score = 36.6 bits (83), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 95  CGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVA 154
           C  +  +GTC+YGS C++ H        P        P  + E+ C  +M  G C +G+ 
Sbjct: 332 CKNWQISGTCRYGSKCQFAHGNQELKEPPRH------PKYKSER-CRSFMMYGYCPYGLR 384

Query: 155 CKFHH 159
           C F H
Sbjct: 385 CCFLH 389



 Score = 35.4 bits (80), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 9/87 (10%)

Query: 30  HDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPE- 88
           H +    GVA          EP C  ++ +G C YGS C+F H      G Q  +E P  
Sbjct: 310 HGSGSSNGVAPNGKRALYKTEP-CKNWQISGTCRYGSKCQFAH------GNQELKEPPRH 362

Query: 89  -RNGQPDCGYYLKTGTCKYGSTCKYHH 114
            +     C  ++  G C YG  C + H
Sbjct: 363 PKYKSERCRSFMMYGYCPYGLRCCFLH 389


>sp|Q6YVX9|C3H16_ORYSJ Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa
           subsp. japonica GN=Os02g0557500 PE=2 SV=2
          Length = 678

 Score = 41.2 bits (95), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 25/38 (65%)

Query: 132 PMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTAL 169
           P++QD+  CP++++TG+C+FGV C   H  P    T L
Sbjct: 161 PIQQDKAHCPFHLKTGACRFGVRCSRVHFYPDKSCTLL 198


>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2
           PE=1 SV=3
          Length = 494

 Score = 41.2 bits (95), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 348
           CR +  +GTCKYG  C+F H    +          L    +    +C  +   G C +GP
Sbjct: 159 CRPFEESGTCKYGEKCQFAHGFHELRS--------LTRHPKYKTELCRTFHTIGFCPYGP 210

Query: 349 TCRFDH 354
            C F H
Sbjct: 211 RCHFIH 216



 Score = 33.5 bits (75), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 53  CLFYRRTGLCGYGSNCRFNHPAYAAQGA----QYREELPERNGQPDCGYYLKTGTCKYGS 108
           C  +  +G C YG  C+F H  +  +      +Y+ EL        C  +   G C YG 
Sbjct: 159 CRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTEL--------CRTFHTIGFCPYGP 210

Query: 109 TCKYHHPKDRNGAGP 123
            C + H  D     P
Sbjct: 211 RCHFIHNADERRPAP 225


>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2
           PE=2 SV=1
          Length = 367

 Score = 41.2 bits (95), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 348
           CR +  +GTCKYG  C+F H    +          L    +    +C  +   G C +GP
Sbjct: 132 CRPFEESGTCKYGEKCQFAHGFHELRS--------LTRHPKYKTELCRTFHTIGFCPYGP 183

Query: 349 TCRFDH 354
            C F H
Sbjct: 184 RCHFIH 189



 Score = 32.7 bits (73), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 12/71 (16%)

Query: 53  CLFYRRTGLCGYGSNCRFNHPAYAAQGA----QYREELPERNGQPDCGYYLKTGTCKYGS 108
           C  +  +G C YG  C+F H  +  +      +Y+ EL        C  +   G C YG 
Sbjct: 132 CRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTEL--------CRTFHTIGFCPYGP 183

Query: 109 TCKYHHPKDRN 119
            C + H  D  
Sbjct: 184 RCHFIHNADER 194


>sp|Q54CU9|DUS3L_DICDI tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Dictyostelium
           discoideum GN=dus3l PE=3 SV=1
          Length = 671

 Score = 41.2 bits (95), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 27/104 (25%)

Query: 297 TCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPY 356
            C++   CKF H  E+   S   +IG           IC N+  YG CK+G  C F   +
Sbjct: 113 VCEFNETCKFSHDVEKYLASKPKSIG-----------ICQNFQTYGECKYGLNCYFGECH 161

Query: 357 AGYPINYGLSLPPLSILDS-SLMNHQAISATHSIETSPDASSKI 399
                          I+D+ +++N + I     ++T  + S++I
Sbjct: 162 ---------------IVDNKTIVNKELIGKVEPVKTLNEVSNEI 190



 Score = 38.1 bits (87), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 12/83 (14%)

Query: 76  AAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAG-PVSFNILGLPMR 134
           AA+  ++R +L E      C    K   C++  TCK+ H  ++  A  P S  I      
Sbjct: 86  AAKKKEFRNQLRESMNDKLCPKISKGLVCEFNETCKFSHDVEKYLASKPKSIGI------ 139

Query: 135 QDEKSCPYYMRTGSCKFGVACKF 157
                C  +   G CK+G+ C F
Sbjct: 140 -----CQNFQTYGECKYGLNCYF 157


>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
           GN=zfp36l2-A PE=2 SV=1
          Length = 363

 Score = 41.2 bits (95), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 348
           CR +  +G CKYG  C+F H            +  L    +    +C  +   G C +GP
Sbjct: 137 CRPFEESGACKYGEKCQFAH--------GFHELRSLTRHPKYKTELCRTFHTIGFCPYGP 188

Query: 349 TCRFDH 354
            C F H
Sbjct: 189 RCHFIH 194



 Score = 34.3 bits (77), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 53  CLFYRRTGLCGYGSNCRFNHPAYAAQGA----QYREELPERNGQPDCGYYLKTGTCKYGS 108
           C  +  +G C YG  C+F H  +  +      +Y+ EL        C  +   G C YG 
Sbjct: 137 CRPFEESGACKYGEKCQFAHGFHELRSLTRHPKYKTEL--------CRTFHTIGFCPYGP 188

Query: 109 TCKYHHPKDRNGAGP 123
            C + H  +     P
Sbjct: 189 RCHFIHNAEERRQAP 203


>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis
           GN=zfp36l2-B PE=2 SV=1
          Length = 364

 Score = 40.4 bits (93), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 348
           CR +   G CKYG  C+F H            +  L    +    +C  +   G C +GP
Sbjct: 139 CRPFEENGACKYGEKCQFAH--------GFHELRSLTRHPKYKTELCRTFHTIGFCPYGP 190

Query: 349 TCRFDH 354
            C F H
Sbjct: 191 RCHFIH 196



 Score = 33.5 bits (75), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 53  CLFYRRTGLCGYGSNCRFNHPAYAAQGA----QYREELPERNGQPDCGYYLKTGTCKYGS 108
           C  +   G C YG  C+F H  +  +      +Y+ EL        C  +   G C YG 
Sbjct: 139 CRPFEENGACKYGEKCQFAHGFHELRSLTRHPKYKTEL--------CRTFHTIGFCPYGP 190

Query: 109 TCKYHHPKDRNGAGP 123
            C + H  +     P
Sbjct: 191 RCHFIHNAEERRQAP 205


>sp|O74463|YQC1_SCHPO Uncharacterized protein C1739.01 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPCC1739.01 PE=1 SV=2
          Length = 547

 Score = 40.4 bits (93), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 20/70 (28%)

Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 348
           C+++ N GTC  G +C F H  E                 RP   IC  Y + G CKFGP
Sbjct: 47  CKFFRN-GTCTAGENCPFSHSLET---------------ERP---IC-KYFLKGNCKFGP 86

Query: 349 TCRFDHPYAG 358
            C   H   G
Sbjct: 87  KCALSHALPG 96



 Score = 38.9 bits (89), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 16/62 (25%)

Query: 53  CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
           C F+R  G C  G NC F+H               ER   P C Y+LK G CK+G  C  
Sbjct: 47  CKFFRN-GTCTAGENCPFSHSLET-----------ER---PICKYFLK-GNCKFGPKCAL 90

Query: 113 HH 114
            H
Sbjct: 91  SH 92



 Score = 35.0 bits (79), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 23/113 (20%)

Query: 98  YLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKF 157
           + + GTC  G  C + H                  +  +   C Y+++ G+CKFG  C  
Sbjct: 49  FFRNGTCTAGENCPFSHS-----------------LETERPICKYFLK-GNCKFGPKCAL 90

Query: 158 HHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYLSSR 210
            H  P +  T LP   N +  +  +S+  + G     S    + Q +P LSS+
Sbjct: 91  SHALPGN--TNLP---NGTSTNTMASMAANGGASSVASKQMGANQISPSLSSK 138


>sp|Q6C922|YTH1_YARLI mRNA 3'-end-processing protein YTH1 OS=Yarrowia lipolytica (strain
           CLIB 122 / E 150) GN=YTH1 PE=3 SV=1
          Length = 193

 Score = 40.0 bits (92), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 44/111 (39%), Gaps = 24/111 (21%)

Query: 60  GLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119
           GLC  G NC F H  Y  Q              P+C +Y+K G C     C+Y H  D  
Sbjct: 66  GLCKKGLNCEFLH-EYNLQKM------------PECQFYVKNGFCTQSPDCQYLH-IDPA 111

Query: 120 GAGPVSFNI-LGLPMRQDEKS--------CPYYMRTGSCKFGVACKFHHPQ 161
              PV FN   G      E S        C  YM TG C  G  C+F HP+
Sbjct: 112 SKIPVCFNYEKGFCKMGPECSRKHIRRMPCELYM-TGFCPKGRVCEFAHPK 161



 Score = 33.1 bits (74), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 287 PDCRYYMNTGTCKYGADCKFHH--PKERI-----AQSAASNIGPLGLPSRPGQAICSNYS 339
           P+C++Y+  G C    DC++ H  P  +I      +     +GP        +  C  Y 
Sbjct: 86  PECQFYVKNGFCTQSPDCQYLHIDPASKIPVCFNYEKGFCKMGPECSRKHIRRMPCELY- 144

Query: 340 MYGICKFGPTCRFDHP 355
           M G C  G  C F HP
Sbjct: 145 MTGFCPKGRVCEFAHP 160


>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2
          Length = 436

 Score = 40.0 bits (92), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 21/114 (18%)

Query: 250 AGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPD---------CRYYMNTGTCKY 300
           A ++L+  + N G++     +H     +Q+ P  P QP          CR +   G CKY
Sbjct: 97  AVASLVTITENLGNM----NLHRKLERTQSEPLPPQQPMNTSRYKTELCRPFEEAGECKY 152

Query: 301 GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 354
           G  C+F H    +               +     C  +   G C +GP C F H
Sbjct: 153 GEKCQFAHGSHELRNVHRH--------PKYKTEYCRTFHSVGFCPYGPRCHFVH 198



 Score = 35.0 bits (79), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 42/117 (35%), Gaps = 22/117 (18%)

Query: 13  ANQSADNIEEAIWRLKIHDNQEGGGVAQASPYP-------ARPGEPDCLFYRRTGLCGYG 65
           A  S   I E +  + +H   E     Q+ P P       +R     C  +   G C YG
Sbjct: 97  AVASLVTITENLGNMNLHRKLE---RTQSEPLPPQQPMNTSRYKTELCRPFEEAGECKYG 153

Query: 66  SNCRFNHPAYAAQGA----QYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR 118
             C+F H ++  +      +Y+ E         C  +   G C YG  C + H  D 
Sbjct: 154 EKCQFAHGSHELRNVHRHPKYKTEY--------CRTFHSVGFCPYGPRCHFVHNADE 202


>sp|P22893|TTP_MOUSE Tristetraprolin OS=Mus musculus GN=Zfp36 PE=1 SV=1
          Length = 319

 Score = 40.0 bits (92), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 348
           CR Y  +G C+YGA C+F H    + Q   +N  P     +    +C  + + G C +G 
Sbjct: 101 CRTYSESGRCRYGAKCQFAHGLGELRQ---ANRHP-----KYKTELCHKFYLQGRCPYGS 152

Query: 349 TCRFDH 354
            C F H
Sbjct: 153 RCHFIH 158



 Score = 36.2 bits (82), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 12/81 (14%)

Query: 53  CLFYRRTGLCGYGSNCRFNHPAYAAQGA----QYREELPERNGQPDCGYYLKTGTCKYGS 108
           C  Y  +G C YG+ C+F H     + A    +Y+ EL        C  +   G C YGS
Sbjct: 101 CRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTEL--------CHKFYLQGRCPYGS 152

Query: 109 TCKYHHPKDRNGAGPVSFNIL 129
            C + H    + A P   ++L
Sbjct: 153 RCHFIHNPTEDLALPGQPHVL 173


>sp|P47973|TTP_RAT Tristetraprolin OS=Rattus norvegicus GN=Zfp36 PE=2 SV=1
          Length = 320

 Score = 40.0 bits (92), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 348
           CR Y  +G C+YGA C+F H    + Q   +N  P     +    +C  + + G C +G 
Sbjct: 102 CRTYSESGRCRYGAKCQFAHGPGELRQ---ANRHP-----KYKTELCHKFYLQGRCPYGS 153

Query: 349 TCRFDH 354
            C F H
Sbjct: 154 RCHFIH 159



 Score = 36.2 bits (82), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 12/81 (14%)

Query: 53  CLFYRRTGLCGYGSNCRFNH-PAYAAQG---AQYREELPERNGQPDCGYYLKTGTCKYGS 108
           C  Y  +G C YG+ C+F H P    Q     +Y+ EL        C  +   G C YGS
Sbjct: 102 CRTYSESGRCRYGAKCQFAHGPGELRQANRHPKYKTEL--------CHKFYLQGRCPYGS 153

Query: 109 TCKYHHPKDRNGAGPVSFNIL 129
            C + H    + A P   ++L
Sbjct: 154 RCHFIHNPTEDLALPGQPHVL 174



 Score = 33.9 bits (76), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 17/107 (15%)

Query: 81  QYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSC 140
           +Y+ EL        C  Y ++G C+YG+ C++ H       GP          +   + C
Sbjct: 96  RYKTEL--------CRTYSESGRCRYGAKCQFAH-------GPGELRQANRHPKYKTELC 140

Query: 141 PYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPS 187
             +   G C +G  C F H     L  ALP   +    S+  S LPS
Sbjct: 141 HKFYLQGRCPYGSRCHFIHNPTEDL--ALPGQPHVLRQSISFSGLPS 185


>sp|P41000|CPS3_SCHPO Protein cps3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=cps3 PE=1 SV=3
          Length = 583

 Score = 39.7 bits (91), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 14/62 (22%)

Query: 53  CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
           C F+R+ G C  G NC F+H            +L     +  C Y+ K G CK+GS C  
Sbjct: 41  CKFFRQ-GTCTSGKNCIFSH------------DLELATEKTICKYFQK-GNCKFGSKCAL 86

Query: 113 HH 114
            H
Sbjct: 87  EH 88



 Score = 36.6 bits (83), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 16/65 (24%)

Query: 98  YLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKF 157
           + + GTC  G  C + H                L +  ++  C Y+ + G+CKFG  C  
Sbjct: 43  FFRQGTCTSGKNCIFSH---------------DLELATEKTICKYFQK-GNCKFGSKCAL 86

Query: 158 HHPQP 162
            H  P
Sbjct: 87  EHVLP 91



 Score = 34.7 bits (78), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 18/66 (27%)

Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 348
           C+++   GTC  G +C F H  E   +                + IC  Y   G CKFG 
Sbjct: 41  CKFFRQ-GTCTSGKNCIFSHDLELATE----------------KTIC-KYFQKGNCKFGS 82

Query: 349 TCRFDH 354
            C  +H
Sbjct: 83  KCALEH 88


>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1
           PE=1 SV=1
          Length = 338

 Score = 39.7 bits (91), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 348
           CR +   G CKYG  C+F H            +  L    +    +C  +   G C +GP
Sbjct: 120 CRPFEENGACKYGDKCQFAH--------GIHELRSLTRHPKYKTELCRTFHTIGFCPYGP 171

Query: 349 TCRFDH 354
            C F H
Sbjct: 172 RCHFIH 177



 Score = 38.5 bits (88), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 16/100 (16%)

Query: 19  NIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQ 78
           +  E   RL     Q GGG   +S Y      P    +   G C YG  C+F H  +  +
Sbjct: 90  SFSEGGERLLPTQKQPGGGQVNSSRYKTELCRP----FEENGACKYGDKCQFAHGIHELR 145

Query: 79  GA----QYREELPERNGQPDCGYYLKTGTCKYGSTCKYHH 114
                 +Y+ EL        C  +   G C YG  C + H
Sbjct: 146 SLTRHPKYKTEL--------CRTFHTIGFCPYGPRCHFIH 177


>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
           GN=Zfp36l1 PE=1 SV=1
          Length = 338

 Score = 39.7 bits (91), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 348
           CR +   G CKYG  C+F H            +  L    +    +C  +   G C +GP
Sbjct: 120 CRPFEENGACKYGDKCQFAH--------GIHELRSLTRHPKYKTELCRTFHTIGFCPYGP 171

Query: 349 TCRFDH 354
            C F H
Sbjct: 172 RCHFIH 177



 Score = 36.2 bits (82), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 16/100 (16%)

Query: 19  NIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQ 78
           +  E   RL     Q G G   +S Y      P    +   G C YG  C+F H  +  +
Sbjct: 90  SFSEGGERLLPTQKQPGSGQVNSSRYKTELCRP----FEENGACKYGDKCQFAHGIHELR 145

Query: 79  GA----QYREELPERNGQPDCGYYLKTGTCKYGSTCKYHH 114
                 +Y+ EL        C  +   G C YG  C + H
Sbjct: 146 SLTRHPKYKTEL--------CRTFHTIGFCPYGPRCHFIH 177


>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1
           PE=1 SV=1
          Length = 338

 Score = 39.7 bits (91), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 348
           CR +   G CKYG  C+F H            +  L    +    +C  +   G C +GP
Sbjct: 120 CRPFEENGACKYGDKCQFAH--------GIHELRSLTRHPKYKTELCRTFHTIGFCPYGP 171

Query: 349 TCRFDH 354
            C F H
Sbjct: 172 RCHFIH 177



 Score = 36.2 bits (82), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 16/100 (16%)

Query: 19  NIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQ 78
           +  E   RL     Q G G   +S Y      P    +   G C YG  C+F H  +  +
Sbjct: 90  SFSEGGERLLPTQKQPGSGQVNSSRYKTELCRP----FEENGACKYGDKCQFAHGIHELR 145

Query: 79  GA----QYREELPERNGQPDCGYYLKTGTCKYGSTCKYHH 114
                 +Y+ EL        C  +   G C YG  C + H
Sbjct: 146 SLTRHPKYKTEL--------CRTFHTIGFCPYGPRCHFIH 177


>sp|Q28BT8|DUS3L_XENTR tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus
           tropicalis GN=dus3l PE=2 SV=2
          Length = 639

 Score = 39.7 bits (91), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 62  CGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
           C +G  C+F H       A+Y  E PE + +P+C  Y   G C YG TC++
Sbjct: 139 CFFGDKCKFLHDV-----AKYVSEKPE-DIRPNCYLYETFGKCIYGVTCRF 183



 Score = 35.0 bits (79), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 298 CKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 357
           C +G  CKF H   +       +I       RP    C  Y  +G C +G TCRF   + 
Sbjct: 139 CFFGDKCKFLHDVAKYVSEKPEDI-------RPN---CYLYETFGKCIYGVTCRFAKSHL 188

Query: 358 G 358
           G
Sbjct: 189 G 189


>sp|Q7ZWS1|DUS3L_XENLA tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus laevis
           GN=dus3l PE=2 SV=1
          Length = 640

 Score = 39.7 bits (91), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)

Query: 62  CGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
           C +G  C+F+H       A+Y  + PE + +P+C  Y   G C YG TC++
Sbjct: 140 CFFGDKCKFSHDV-----AKYVSQKPE-DIRPNCHLYETFGKCIYGVTCRF 184



 Score = 35.4 bits (80), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 298 CKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 357
           C +G  CKF H   +       +I       RP    C  Y  +G C +G TCRF   + 
Sbjct: 140 CFFGDKCKFSHDVAKYVSQKPEDI-------RPN---CHLYETFGKCIYGVTCRFAKSHL 189

Query: 358 G 358
           G
Sbjct: 190 G 190


>sp|Q9DD48|MKRN2_SERQU Probable E3 ubiquitin-protein ligase makorin-2 OS=Seriola
           quinqueradiata GN=mkrn2 PE=2 SV=1
          Length = 423

 Score = 39.3 bits (90), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 17/75 (22%)

Query: 92  QPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKF 151
           Q  C Y+L  G C+ GS C + H  D N + P +              C +Y R G C +
Sbjct: 5   QVTCRYFLH-GVCREGSRCLFSH--DLNNSKPSTI-------------CKFYQR-GVCAY 47

Query: 152 GVACKFHHPQPSSLG 166
           G  C++ H +PSS G
Sbjct: 48  GERCRYDHIKPSSRG 62



 Score = 35.4 bits (80), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 18/69 (26%)

Query: 286 QPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICK 345
           Q  CRY+++ G C+ G+ C F H                 L +     IC  Y   G+C 
Sbjct: 5   QVTCRYFLH-GVCREGSRCLFSH----------------DLNNSKPSTICKFYQR-GVCA 46

Query: 346 FGPTCRFDH 354
           +G  CR+DH
Sbjct: 47  YGERCRYDH 55



 Score = 33.1 bits (74), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 15/69 (21%)

Query: 56  YRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHH- 114
           Y   G+C  GS C F+H            +L        C +Y + G C YG  C+Y H 
Sbjct: 10  YFLHGVCREGSRCLFSH------------DLNNSKPSTICKFY-QRGVCAYGERCRYDHI 56

Query: 115 -PKDRNGAG 122
            P  R G G
Sbjct: 57  KPSSRGGGG 65


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.132    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,071,582
Number of Sequences: 539616
Number of extensions: 8474463
Number of successful extensions: 16625
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 159
Number of HSP's that attempted gapping in prelim test: 14855
Number of HSP's gapped (non-prelim): 1226
length of query: 451
length of database: 191,569,459
effective HSP length: 121
effective length of query: 330
effective length of database: 126,275,923
effective search space: 41671054590
effective search space used: 41671054590
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)