Query 013033
Match_columns 451
No_of_seqs 366 out of 1872
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 02:57:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013033.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013033hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.6 5.2E-16 1.8E-20 124.5 3.4 67 283-357 9-75 (77)
2 2d9n_A Cleavage and polyadenyl 99.5 2.8E-14 9.4E-19 115.1 5.9 68 47-145 7-74 (77)
3 2cqe_A KIAA1064 protein; CCCH 99.4 3.4E-14 1.2E-18 119.8 2.4 87 43-148 6-95 (98)
4 1m9o_A Tristetraproline; Cys3H 99.4 8E-14 2.7E-18 111.7 4.1 69 45-117 7-75 (77)
5 2cqe_A KIAA1064 protein; CCCH 99.3 1.5E-12 5E-17 109.8 4.9 58 278-358 5-62 (98)
6 2rhk_C Cleavage and polyadenyl 99.3 6.7E-13 2.3E-17 105.8 2.6 57 47-118 13-69 (72)
7 2d9n_A Cleavage and polyadenyl 99.1 5.4E-11 1.8E-15 95.8 3.7 56 284-358 8-63 (77)
8 2e5s_A Otthump00000018578; ZF- 99.1 2.6E-11 8.9E-16 102.2 1.7 60 49-117 19-79 (98)
9 3d2q_A Muscleblind-like protei 99.1 5E-11 1.7E-15 94.3 3.1 59 50-117 6-65 (70)
10 2rhk_C Cleavage and polyadenyl 99.1 2.2E-11 7.6E-16 97.0 0.9 55 91-163 15-69 (72)
11 2e5s_A Otthump00000018578; ZF- 98.9 2.3E-10 7.8E-15 96.4 0.9 69 277-358 11-80 (98)
12 3d2n_A Muscleblind-like protei 98.9 1E-09 3.6E-14 89.7 3.4 57 50-117 9-66 (83)
13 3d2q_A Muscleblind-like protei 98.8 6.7E-10 2.3E-14 87.8 1.8 62 285-359 5-67 (70)
14 2rpp_A Muscleblind-like protei 98.7 3.4E-09 1.2E-13 87.7 3.2 57 50-117 17-74 (89)
15 3d2n_A Muscleblind-like protei 98.7 2.5E-09 8.7E-14 87.4 1.8 59 91-163 8-67 (83)
16 2rpp_A Muscleblind-like protei 98.7 5.1E-09 1.7E-13 86.6 2.0 59 91-163 16-75 (89)
17 2d9m_A Zinc finger CCCH-type d 98.2 3.3E-07 1.1E-11 71.9 2.4 30 285-315 19-48 (69)
18 3u9g_A Zinc finger CCCH-type a 98.2 5.7E-07 2E-11 85.5 3.9 78 52-162 91-198 (229)
19 3u9g_A Zinc finger CCCH-type a 98.1 1.9E-06 6.3E-11 82.0 4.6 65 94-160 91-177 (229)
20 2lhn_A Nuclear polyadenylated 97.2 1.2E-06 4E-11 71.0 0.0 65 50-162 9-73 (80)
21 2d9m_A Zinc finger CCCH-type d 97.0 0.00044 1.5E-08 54.2 3.3 28 49-77 19-46 (69)
22 2fc6_A Nuclear, target of EGR1 96.5 0.00061 2.1E-08 49.8 1.1 30 330-359 18-47 (50)
23 2fc6_A Nuclear, target of EGR1 95.7 0.0025 8.6E-08 46.6 0.9 28 91-118 19-46 (50)
24 2lhn_A Nuclear polyadenylated 94.1 0.0036 1.2E-07 50.5 0.0 42 92-160 9-50 (80)
25 3u1l_A PRE-mRNA-splicing facto 91.6 0.043 1.5E-06 52.7 0.8 25 93-118 71-95 (240)
26 3u1l_A PRE-mRNA-splicing facto 90.2 0.076 2.6E-06 51.0 1.0 26 49-75 69-94 (240)
27 3v33_A Ribonuclease ZC3H12A; r 76.1 0.54 1.8E-05 44.7 0.0 26 331-359 191-216 (223)
28 3v33_A Ribonuclease ZC3H12A; r 70.4 0.89 3.1E-05 43.2 0.0 24 137-163 192-215 (223)
29 2kqb_A Aprataxin and PNK-like 23.8 38 0.0013 27.5 2.1 15 62-76 17-40 (89)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.58 E-value=5.2e-16 Score=124.49 Aligned_cols=67 Identities=30% Similarity=0.732 Sum_probs=31.4
Q ss_pred CCCCccccchhccccccCCCCCccCCcchhhhccccccCCCCCCCCCCCCcCCccccccccCCCCCCCccCCCCC
Q 013033 283 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 357 (451)
Q Consensus 283 r~~~~lC~~f~~tG~C~~G~~Ckf~H~~~~l~~~~~~~l~p~~~p~r~~t~~C~~y~~~G~CkfG~~C~F~H~~~ 357 (451)
++++++|++|+++|.|+||++|+|+|+.++++... ...++++.+|++|.++|.|+||.+|+|.|+..
T Consensus 9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~--------~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN--------RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp CCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------------
T ss_pred CccchhCHHhhhCCCcCCCCCccCCCCChhhcccc--------ccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 46999999999889999999999999999988643 12367789999999889999999999999864
No 2
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.8e-14 Score=115.14 Aligned_cols=68 Identities=29% Similarity=0.660 Sum_probs=57.1
Q ss_pred CCCCcCCccccccCCCCCCCCCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCcee
Q 013033 47 RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSF 126 (451)
Q Consensus 47 rpg~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~~~~~ 126 (451)
..++++|+||++ |.|++|++|+|+|+.... ++++|+||+++|.|. |++|+|.|.....
T Consensus 7 ~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~------- 64 (77)
T 2d9n_A 7 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-------------KMPECYFYSKFGECS-NKECPFLHIDPES------- 64 (77)
T ss_dssp CCTTSBCHHHHT-TCCSCTTSSSSBCSCCTT-------------TSCBCHHHHHTCCCC-CSSCSSBCCCTTS-------
T ss_pred CCcceeCHhHcc-CcCCCCCCCCCccccccC-------------cCCCCcccCCCCccC-CCCeeccCCCccc-------
Confidence 346789999997 999999999999987642 356899999779999 9999999997632
Q ss_pred cccCCCCCCCCCCCCCCCC
Q 013033 127 NILGLPMRQDEKSCPYYMR 145 (451)
Q Consensus 127 ~~~g~P~r~~~~~C~~y~k 145 (451)
+.++|.+|++
T Consensus 65 ---------~~~~C~~f~~ 74 (77)
T 2d9n_A 65 ---------KIKDCPWSGP 74 (77)
T ss_dssp ---------SCSSSSCCTT
T ss_pred ---------cCCCCccccc
Confidence 3467999996
No 3
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.42 E-value=3.4e-14 Score=119.82 Aligned_cols=87 Identities=24% Similarity=0.424 Sum_probs=68.3
Q ss_pred CCCCCCCCcCCccccccCCCCCCCCCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCC
Q 013033 43 PYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAG 122 (451)
Q Consensus 43 ~~p~rpg~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~ 122 (451)
.+..++++.+|+||+ +|.|++|++|+|+|+ +.+|++|++.|.|++|++|+|+|+.......
T Consensus 6 ~~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~------------------~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~ 66 (98)
T 2cqe_A 6 SGELPKKRELCKFYI-TGFCARAENCPYMHG------------------DFPCKLYHTTGNCINGDDCMFSHDPLTEETR 66 (98)
T ss_dssp CCCCSCCCSBCTTTT-TTCCSCSTTCSSBSS------------------SSBCSHHHHTSCCSSCTTCSSBCCCCCHHHH
T ss_pred cCCCCCCCccCcccc-cCcCCCCCCCCCCCC------------------CCcCcCcccCCcCCCCCCCcccCCCCcccch
Confidence 345567899999998 599999999999998 1369999767999999999999996532111
Q ss_pred C---ceecccCCCCCCCCCCCCCCCCCCc
Q 013033 123 P---VSFNILGLPMRQDEKSCPYYMRTGS 148 (451)
Q Consensus 123 ~---~~~~~~g~P~r~~~~~C~~y~k~G~ 148 (451)
. ..++..+.+.+.++++|.++.++|.
T Consensus 67 ~~l~~~l~~~~~~~~~~e~e~~~~~k~~~ 95 (98)
T 2cqe_A 67 ELLDKMLADDAEAGAEDEKEVEELKKSGP 95 (98)
T ss_dssp HHHHHHHHHHHHSCCCCCCCCCCSCCCCC
T ss_pred hHHhhhcchhhhhccCCcHHHHHHHHcCC
Confidence 1 1234446678889999999999875
No 4
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.41 E-value=8e-14 Score=111.66 Aligned_cols=69 Identities=28% Similarity=0.583 Sum_probs=29.6
Q ss_pred CCCCCCcCCccccccCCCCCCCCCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCC
Q 013033 45 PARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117 (451)
Q Consensus 45 p~rpg~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~ 117 (451)
..++++.+|++|+++|.|++|++|+|+|+..+..... ...+.++.+|++|.++|.|++|++|+|+|...
T Consensus 7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~----~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN----RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC------------------------------------
T ss_pred CCCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc----ccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 4577899999998889999999999999976432211 11234667899888789999999999999864
No 5
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.30 E-value=1.5e-12 Score=109.80 Aligned_cols=58 Identities=26% Similarity=0.575 Sum_probs=50.2
Q ss_pred CCCCCCCCCccccchhccccccCCCCCccCCcchhhhccccccCCCCCCCCCCCCcCCccccccccCCCCCCCccCCCCC
Q 013033 278 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 357 (451)
Q Consensus 278 ~~~p~r~~~~lC~~f~~tG~C~~G~~Ckf~H~~~~l~~~~~~~l~p~~~p~r~~t~~C~~y~~~G~CkfG~~C~F~H~~~ 357 (451)
..+..+.++.+|+||+ +|.|++|++|+|+|+ +.+|++|.++|.|++|.+|+|.|+..
T Consensus 5 H~~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~----------------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 5 SSGELPKKRELCKFYI-TGFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp CCCCCSCCCSBCTTTT-TTCCSCSTTCSSBSS----------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred ccCCCCCCCccCcccc-cCcCCCCCCCCCCCC----------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 3455667999999997 599999999999996 45899998779999999999999965
Q ss_pred C
Q 013033 358 G 358 (451)
Q Consensus 358 ~ 358 (451)
.
T Consensus 62 ~ 62 (98)
T 2cqe_A 62 T 62 (98)
T ss_dssp C
T ss_pred c
Confidence 3
No 6
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.29 E-value=6.7e-13 Score=105.82 Aligned_cols=57 Identities=28% Similarity=0.621 Sum_probs=49.3
Q ss_pred CCCCcCCccccccCCCCCCCCCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCCC
Q 013033 47 RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR 118 (451)
Q Consensus 47 rpg~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~~ 118 (451)
..++++|+||++ |.|++|++|+|+|+.+.. ++++|+||++.|.|.+ ++|+|.|....
T Consensus 13 ~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~-------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 13 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-------------KMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp CCCCSBCHHHHT-TCCCCGGGSSSBCSCCTT-------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred CCcCeeCHHHhc-CCCCCCCCCCCccccccc-------------cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 456789999998 999999999999997532 4578999997799998 99999998764
No 7
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=5.4e-11 Score=95.79 Aligned_cols=56 Identities=29% Similarity=0.630 Sum_probs=48.5
Q ss_pred CCCccccchhccccccCCCCCccCCcchhhhccccccCCCCCCCCCCCCcCCccccccccCCCCCCCccCCCCCC
Q 013033 284 PDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 358 (451)
Q Consensus 284 ~~~~lC~~f~~tG~C~~G~~Ckf~H~~~~l~~~~~~~l~p~~~p~r~~t~~C~~y~~~G~CkfG~~C~F~H~~~~ 358 (451)
.++++|+||++ |.|++|++|+|+|+.+.. ++++|++|.++|.|. |++|+|.|....
T Consensus 8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~ 63 (77)
T 2d9n_A 8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMPECYFYSKFGECS-NKECPFLHIDPE 63 (77)
T ss_dssp CTTSBCHHHHT-TCCSCTTSSSSBCSCCTT-----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred CcceeCHhHcc-CcCCCCCCCCCccccccC-----------------cCCCCcccCCCCccC-CCCeeccCCCcc
Confidence 47899999999 999999999999965421 256899999999999 999999999753
No 8
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=2.6e-11 Score=102.17 Aligned_cols=60 Identities=37% Similarity=0.706 Sum_probs=48.2
Q ss_pred CCcCCccccccCCCCCCC-CCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCC
Q 013033 49 GEPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117 (451)
Q Consensus 49 g~~~C~~f~rtG~C~~G~-~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~ 117 (451)
+.++|++|++ |.|.+|+ .|+|+|+.+.... .+...++++|++|++ |.|.++ +|+|.|+..
T Consensus 19 k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 19 KLEVCREFQR-GNCARGETDCRFAHPADSTMI------DTSDNTVTVCMDYIK-GRCMRE-KCKYFHPPA 79 (98)
T ss_dssp EEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC------CTTTCEEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred hhhhhHHHhc-CcCCCCCCCCCCcCCchhccc------cccCCccccchhhcc-CCCCCC-CcCccCChH
Confidence 3579999998 9999999 8999999864210 112235689999997 999988 999999875
No 9
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.06 E-value=5e-11 Score=94.34 Aligned_cols=59 Identities=39% Similarity=0.751 Sum_probs=46.7
Q ss_pred CcCCccccccCCCCCCC-CCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCC
Q 013033 50 EPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117 (451)
Q Consensus 50 ~~~C~~f~rtG~C~~G~-~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~ 117 (451)
.++|++|++ |.|.+|+ .|+|+|+.+.... -+...++++|++|++ |.|.+| +|+|.|...
T Consensus 6 ~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 6 LEVCREYQR-GNCNRGENDCRFAHPADSTMI------DTNDNTVTVCMDYIK-GRCSRE-KCKYFHPPA 65 (70)
T ss_dssp EEBCHHHHT-TCCSSCTTTCSSBCCCTTSCC------BTTTTEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred chhCHHHhc-CCCCCCCCCCCCccCcccccc------cccCCcceeccccCc-CCCCCC-CcCeeCCHH
Confidence 368999996 9999999 5999998763210 012335689999997 999998 999999865
No 10
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.06 E-value=2.2e-11 Score=96.99 Aligned_cols=55 Identities=31% Similarity=0.739 Sum_probs=47.5
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 013033 91 GQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPS 163 (451)
Q Consensus 91 ~~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~~~~~~~~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~~ 163 (451)
++.+|+||++ |.|++|++|+|+|+.... ..++|+||++.|.|.+ ++|+|.|..+.
T Consensus 15 k~~vCk~fl~-G~C~~G~~C~fsH~~~~~----------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 15 KTVVCKHWLR-GLCKKGDQCEFLHEYDMT----------------KMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp CCSBCHHHHT-TCCCCGGGSSSBCSCCTT----------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred cCeeCHHHhc-CCCCCCCCCCCccccccc----------------cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 5678999997 999999999999997532 2457999997799998 99999999875
No 11
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=2.3e-10 Score=96.40 Aligned_cols=69 Identities=30% Similarity=0.660 Sum_probs=55.0
Q ss_pred cCCCCCCCCCccccchhccccccCCC-CCccCCcchhhhccccccCCCCCCCCCCCCcCCccccccccCCCCCCCccCCC
Q 013033 277 SQNLPERPDQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 355 (451)
Q Consensus 277 ~~~~p~r~~~~lC~~f~~tG~C~~G~-~Ckf~H~~~~l~~~~~~~l~p~~~p~r~~t~~C~~y~~~G~CkfG~~C~F~H~ 355 (451)
.+++....+.++|++|++ |.|+.|+ .|+|+|+.+.+... +...+..+|.+|.+ |.|..| .|+|.|+
T Consensus 11 ~~K~~~~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~ 77 (98)
T 2e5s_A 11 TQKLLRTDKLEVCREFQR-GNCARGETDCRFAHPADSTMID----------TSDNTVTVCMDYIK-GRCMRE-KCKYFHP 77 (98)
T ss_dssp CCCCCCSSEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCC----------TTTCEEEBCHHHHH-TCCCCT-TCCSBCC
T ss_pred cccccChhhhhhhHHHhc-CcCCCCCCCCCCcCCchhcccc----------ccCCccccchhhcc-CCCCCC-CcCccCC
Confidence 345555566799999999 9999999 79999987765321 12345779999998 999999 9999999
Q ss_pred CCC
Q 013033 356 YAG 358 (451)
Q Consensus 356 ~~~ 358 (451)
...
T Consensus 78 ~~~ 80 (98)
T 2e5s_A 78 PAH 80 (98)
T ss_dssp CHH
T ss_pred hHH
Confidence 863
No 12
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.85 E-value=1e-09 Score=89.65 Aligned_cols=57 Identities=35% Similarity=0.683 Sum_probs=46.0
Q ss_pred CcCCccccccCCCCCCC-CCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCC
Q 013033 50 EPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117 (451)
Q Consensus 50 ~~~C~~f~rtG~C~~G~-~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~ 117 (451)
.++|++|++ |.|.+|+ .|+|+|+...... +....++|.+|++ |.|..+ .|+|.|+..
T Consensus 9 ~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~--------~~~~~~vC~dflk-G~C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 9 LEVCREFQR-GTCSRPDTECKFAHPSKSCQV--------ENGRVIACFDSLK-GRCSRE-NCKYLHPPP 66 (83)
T ss_dssp EEBCTTGGG-TCCCSCTTTCSSBCCCTTCCE--------ETTEEECCHHHHT-TCCCCS-SCSSCCCCH
T ss_pred chhcHHHhc-CCCCCCCCCCCCcCCCccccc--------cCCceeehhHhhh-ccccCC-CcceeCChH
Confidence 468999998 9999997 9999999763210 0124578999997 999987 899999875
No 13
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.84 E-value=6.7e-10 Score=87.81 Aligned_cols=62 Identities=31% Similarity=0.718 Sum_probs=49.8
Q ss_pred CCccccchhccccccCCC-CCccCCcchhhhccccccCCCCCCCCCCCCcCCccccccccCCCCCCCccCCCCCCC
Q 013033 285 DQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY 359 (451)
Q Consensus 285 ~~~lC~~f~~tG~C~~G~-~Ckf~H~~~~l~~~~~~~l~p~~~p~r~~t~~C~~y~~~G~CkfG~~C~F~H~~~~~ 359 (451)
+.++|++|++ |.|+.|+ .|+|+|+.+++... +...++.+|++|.+ |.|..| .|+|.|+...+
T Consensus 5 k~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~L 67 (70)
T 3d2q_A 5 RLEVCREYQR-GNCNRGENDCRFAHPADSTMID----------TNDNTVTVCMDYIK-GRCSRE-KCKYFHPPAHL 67 (70)
T ss_dssp EEEBCHHHHT-TCCSSCTTTCSSBCCCTTSCCB----------TTTTEEEBCHHHHT-TCCCCT-TCCSBCCCHHH
T ss_pred cchhCHHHhc-CCCCCCCCCCCCccCccccccc----------ccCCcceeccccCc-CCCCCC-CcCeeCCHHHH
Confidence 4578999977 9999999 59999988765321 12345789999998 999999 99999997543
No 14
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.75 E-value=3.4e-09 Score=87.69 Aligned_cols=57 Identities=35% Similarity=0.701 Sum_probs=46.3
Q ss_pred CcCCccccccCCCCCCC-CCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCC
Q 013033 50 EPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117 (451)
Q Consensus 50 ~~~C~~f~rtG~C~~G~-~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~ 117 (451)
.++|++|+| |.|.+|+ .|+|+|+...... +..+.++|.+|++ |.|..+ .|+|.|+..
T Consensus 17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v--------~~~~~~vC~dflk-G~C~r~-~Cky~H~~~ 74 (89)
T 2rpp_A 17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQV--------ENGRVIACFDSLK-GRCSRE-NCKYLHPPT 74 (89)
T ss_dssp ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCC--------BTTBEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred hhhchHHhc-CCCCCCCCCCCCcCCCccccc--------cCCceeeehhhhh-CcCCCC-CcceecCHH
Confidence 478999998 9999998 9999999764210 1124689999997 999976 899999875
No 15
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.73 E-value=2.5e-09 Score=87.37 Aligned_cols=59 Identities=27% Similarity=0.634 Sum_probs=47.1
Q ss_pred cccccccccccccCCCCC-CCCCCCCCCCCCCCCceecccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 013033 91 GQPDCGYYLKTGTCKYGS-TCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPS 163 (451)
Q Consensus 91 ~~p~C~~FlktG~Ck~G~-~CrF~H~~~~~~~~~~~~~~~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~~ 163 (451)
+.++|++|++ |.|+.|+ .|+|+|+....... .....+|.+|++ |.|..+ .|+|.|+...
T Consensus 8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~-----------~~~~~vC~dflk-G~C~r~-~C~y~H~~~~ 67 (83)
T 3d2n_A 8 TLEVCREFQR-GTCSRPDTECKFAHPSKSCQVE-----------NGRVIACFDSLK-GRCSRE-NCKYLHPPPH 67 (83)
T ss_dssp EEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE-----------TTEEECCHHHHT-TCCCCS-SCSSCCCCHH
T ss_pred cchhcHHHhc-CCCCCCCCCCCCcCCCcccccc-----------CCceeehhHhhh-ccccCC-CcceeCChHH
Confidence 4578999998 9999997 99999998642111 122467999998 999987 9999999765
No 16
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.67 E-value=5.1e-09 Score=86.63 Aligned_cols=59 Identities=25% Similarity=0.604 Sum_probs=47.2
Q ss_pred cccccccccccccCCCCC-CCCCCCCCCCCCCCCceecccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 013033 91 GQPDCGYYLKTGTCKYGS-TCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPS 163 (451)
Q Consensus 91 ~~p~C~~FlktG~Ck~G~-~CrF~H~~~~~~~~~~~~~~~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~~ 163 (451)
+.++|++|++ |.|+.|+ .|+|+|+....... .....+|.+|++ |.|..+ .|+|.|+.+.
T Consensus 16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~-----------~~~~~vC~dflk-G~C~r~-~Cky~H~~~h 75 (89)
T 2rpp_A 16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSCQVE-----------NGRVIACFDSLK-GRCSRE-NCKYLHPPTH 75 (89)
T ss_dssp EECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCB-----------TTBEEBCHHHHH-TCCCCT-TCCSBCCCHH
T ss_pred hhhhchHHhc-CCCCCCCCCCCCcCCCcccccc-----------CCceeeehhhhh-CcCCCC-CcceecCHHH
Confidence 3468999998 9999998 99999998753211 123467999997 999976 9999999765
No 17
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=3.3e-07 Score=71.94 Aligned_cols=30 Identities=37% Similarity=0.750 Sum_probs=27.4
Q ss_pred CCccccchhccccccCCCCCccCCcchhhhc
Q 013033 285 DQPDCRYYMNTGTCKYGADCKFHHPKERIAQ 315 (451)
Q Consensus 285 ~~~lC~~f~~tG~C~~G~~Ckf~H~~~~l~~ 315 (451)
+..||++|+ +|.|+||++|+||||.+||+.
T Consensus 19 k~~LC~~~~-~G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 19 YFSICDRYM-NGTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CCSBCHHHH-HSCCSSCSSCSSBSSHHHHHH
T ss_pred CcccCcccC-cCCCCCCCccCCcCCHHHHhh
Confidence 569999995 599999999999999999986
No 18
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=98.22 E-value=5.7e-07 Score=85.54 Aligned_cols=78 Identities=28% Similarity=0.552 Sum_probs=59.1
Q ss_pred CCccccccCCCC----CCCCCCCCCchhhhcccc----------------------ccccCCCCccccccccccc----c
Q 013033 52 DCLFYRRTGLCG----YGSNCRFNHPAYAAQGAQ----------------------YREELPERNGQPDCGYYLK----T 101 (451)
Q Consensus 52 ~C~~f~rtG~C~----~G~~C~F~H~~~~~~~~~----------------------~~~~~Per~~~p~C~~Flk----t 101 (451)
+|++|+- |.|+ .+..|+|+|+.....+.. ...-+| .+|.+| + +
T Consensus 91 LCK~~l~-G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLP-----eiC~~Y-kG~g~~ 163 (229)
T 3u9g_A 91 LCKLNLL-GRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLP-----EICKSY-KGEGRK 163 (229)
T ss_dssp CCHHHHT-TCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSC-----CBCTTC-CCSSSC
T ss_pred echhhhc-CcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCc-----hHHHHh-CCCCCC
Confidence 5999994 9993 457899999976321110 001122 479999 7 3
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceecccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCC
Q 013033 102 GTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP 162 (451)
Q Consensus 102 G~Ck~G~~CrF~H~~~~~~~~~~~~~~~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~ 162 (451)
|.|++++.|...|. |.+|++ |.|+| .+|+-.|..-
T Consensus 164 g~C~~~~~C~kLHI------------------------C~~Fl~-G~C~f-~~CkRsH~~~ 198 (229)
T 3u9g_A 164 QTCGQPQPCERLHI------------------------CEHFTR-GNCSY-LNCLRSHNLM 198 (229)
T ss_dssp CSCSSSSCCCSBCS------------------------CHHHHT-TCCCC-SSCSSCCCTT
T ss_pred CcCCCCCCCcceec------------------------cchhhc-CCcCC-CCccCccCcc
Confidence 68999999999995 999996 99999 8999999854
No 19
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=98.10 E-value=1.9e-06 Score=82.04 Aligned_cols=65 Identities=23% Similarity=0.347 Sum_probs=41.4
Q ss_pred ccccccccccCC----CCCCCCCCCCCCCCCCCCc-------eecc-----c--CCCCCCCCCCCCCCCCC----CcCCC
Q 013033 94 DCGYYLKTGTCK----YGSTCKYHHPKDRNGAGPV-------SFNI-----L--GLPMRQDEKSCPYYMRT----GSCKF 151 (451)
Q Consensus 94 ~C~~FlktG~Ck----~G~~CrF~H~~~~~~~~~~-------~~~~-----~--g~P~r~~~~~C~~y~k~----G~C~~ 151 (451)
+|++|+. |.|. .+..|+|+|+.....+..+ .++. + ......-..+|.+| ++ |.|.+
T Consensus 91 LCK~~l~-G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~Y-kG~g~~g~C~~ 168 (229)
T 3u9g_A 91 LCKLNLL-GRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSY-KGEGRKQTCGQ 168 (229)
T ss_dssp CCHHHHT-TCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCCBCTTC-CCSSSCCSCSS
T ss_pred echhhhc-CcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCchHHHHh-CCCCCCCcCCC
Confidence 6999995 9993 3578999999875322111 0110 0 00011124789999 63 68999
Q ss_pred CCCCCCCCC
Q 013033 152 GVACKFHHP 160 (451)
Q Consensus 152 G~~CrF~H~ 160 (451)
++.|...|+
T Consensus 169 ~~~C~kLHI 177 (229)
T 3u9g_A 169 PQPCERLHI 177 (229)
T ss_dssp SSCCCSBCS
T ss_pred CCCCcceec
Confidence 999988777
No 20
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=97.18 E-value=1.2e-06 Score=70.99 Aligned_cols=65 Identities=26% Similarity=0.675 Sum_probs=52.1
Q ss_pred CcCCccccccCCCCCCCCCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCceeccc
Q 013033 50 EPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNIL 129 (451)
Q Consensus 50 ~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~~~~~~~~ 129 (451)
.+.|+||.. |.+ ..|.|.|+... ..|+|+.. |+. .+|.|.|+..
T Consensus 9 ~e~CKf~~~---Ctn-~~C~f~Hp~~~----------------~~Cr~g~~---C~~-~~C~f~HP~~------------ 52 (80)
T 2lhn_A 9 LEQCKFGTH---CTN-KRCKYRHARSH----------------IMCREGAN---CTR-IDCLFGHPIN------------ 52 (80)
Confidence 467999986 999 89999997642 35999986 985 8899999732
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCC
Q 013033 130 GLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP 162 (451)
Q Consensus 130 g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~ 162 (451)
+.|+|+.. |.. ..|.|.|+.-
T Consensus 53 --------~~Crf~~~---C~n-~~C~F~Hp~g 73 (80)
T 2lhn_A 53 --------EDCRFGVN---CKN-IYCLFRHPPG 73 (80)
Confidence 45988875 986 8999999853
No 21
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.98 E-value=0.00044 Score=54.23 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=24.4
Q ss_pred CCcCCccccccCCCCCCCCCCCCCchhhh
Q 013033 49 GEPDCLFYRRTGLCGYGSNCRFNHPAYAA 77 (451)
Q Consensus 49 g~~~C~~f~rtG~C~~G~~C~F~H~~~~~ 77 (451)
+..+|+.|+ +|.|.||++|.|+|...+.
T Consensus 19 k~~LC~~~~-~G~C~~G~~C~FAHG~~EL 46 (69)
T 2d9m_A 19 YFSICDRYM-NGTCPEGNSCKFAHGNAEL 46 (69)
T ss_dssp CCSBCHHHH-HSCCSSCSSCSSBSSHHHH
T ss_pred CcccCcccC-cCCCCCCCccCCcCCHHHH
Confidence 448999995 6999999999999998754
No 22
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.54 E-value=0.00061 Score=49.84 Aligned_cols=30 Identities=40% Similarity=0.913 Sum_probs=26.8
Q ss_pred CCCcCCccccccccCCCCCCCccCCCCCCC
Q 013033 330 PGQAICSNYSMYGICKFGPTCRFDHPYAGY 359 (451)
Q Consensus 330 ~~t~~C~~y~~~G~CkfG~~C~F~H~~~~~ 359 (451)
.++.+|..|..+|+|++|..|.|.|..+--
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl~ 47 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISGP 47 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCCC
Confidence 358899999999999999999999998743
No 23
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.73 E-value=0.0025 Score=46.59 Aligned_cols=28 Identities=21% Similarity=0.461 Sum_probs=25.5
Q ss_pred cccccccccccccCCCCCCCCCCCCCCC
Q 013033 91 GQPDCGYYLKTGTCKYGSTCKYHHPKDR 118 (451)
Q Consensus 91 ~~p~C~~FlktG~Ck~G~~CrF~H~~~~ 118 (451)
.+.+|..|...|+|++|.+|.++|+.+.
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDISG 46 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCCC
Confidence 5678999999999999999999999874
No 24
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=94.12 E-value=0.0036 Score=50.52 Aligned_cols=42 Identities=29% Similarity=0.736 Sum_probs=34.1
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCC
Q 013033 92 QPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHP 160 (451)
Q Consensus 92 ~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~~~~~~~~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~ 160 (451)
...|+||.. |+. ..|.|.|+... ..|+++.. |+. ..|.|.|+
T Consensus 9 ~e~CKf~~~---Ctn-~~C~f~Hp~~~-------------------~~Cr~g~~---C~~-~~C~f~HP 50 (80)
T 2lhn_A 9 LEQCKFGTH---CTN-KRCKYRHARSH-------------------IMCREGAN---CTR-IDCLFGHP 50 (80)
Confidence 357999986 996 99999997641 35999875 996 88999998
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.62 E-value=0.043 Score=52.75 Aligned_cols=25 Identities=32% Similarity=0.709 Sum_probs=22.4
Q ss_pred cccccccccccCCCCCCCCCCCCCCC
Q 013033 93 PDCGYYLKTGTCKYGSTCKYHHPKDR 118 (451)
Q Consensus 93 p~C~~FlktG~Ck~G~~CrF~H~~~~ 118 (451)
.+|-||.| |.|++|++|.|.|..+.
T Consensus 71 ~~C~ffak-G~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 71 FFCLFFAK-GMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp SBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred eEcCcccc-CCCCCCCCCCccCCCCC
Confidence 47999998 99999999999998654
No 26
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=90.20 E-value=0.076 Score=51.01 Aligned_cols=26 Identities=31% Similarity=0.760 Sum_probs=22.6
Q ss_pred CCcCCccccccCCCCCCCCCCCCCchh
Q 013033 49 GEPDCLFYRRTGLCGYGSNCRFNHPAY 75 (451)
Q Consensus 49 g~~~C~~f~rtG~C~~G~~C~F~H~~~ 75 (451)
....|.||.| |.|++|++|.|.|...
T Consensus 69 ~~~~C~ffak-G~C~~G~~C~y~H~lP 94 (240)
T 3u1l_A 69 QLFFCLFFAK-GMCCLGPKCEYLHHIP 94 (240)
T ss_dssp CCSBCHHHHT-TCCSCGGGCSSBBSCC
T ss_pred CCeEcCcccc-CCCCCCCCCCccCCCC
Confidence 3457999998 9999999999999753
No 27
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=76.11 E-value=0.54 Score=44.70 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=0.0
Q ss_pred CCcCCccccccccCCCCCCCccCCCCCCC
Q 013033 331 GQAICSNYSMYGICKFGPTCRFDHPYAGY 359 (451)
Q Consensus 331 ~t~~C~~y~~~G~CkfG~~C~F~H~~~~~ 359 (451)
+.++|.|-. .|.||.+|||.||....
T Consensus 191 ~~~~~~~~~---~~~~~~~~~~~~~~~~~ 216 (223)
T 3v33_A 191 RKQPCPYGR---KCTYGIKCRFFHPERPS 216 (223)
T ss_dssp -----------------------------
T ss_pred CCCCCCCCc---ccccCCcceecCCccCC
Confidence 356897755 49999999999998743
No 28
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=70.35 E-value=0.89 Score=43.18 Aligned_cols=24 Identities=38% Similarity=1.233 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 013033 137 EKSCPYYMRTGSCKFGVACKFHHPQPS 163 (451)
Q Consensus 137 ~~~C~~y~k~G~C~~G~~CrF~H~~~~ 163 (451)
...|+|-.+ |.||.+|+|.|++..
T Consensus 192 ~~~~~~~~~---~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 192 KQPCPYGRK---CTYGIKCRFFHPERP 215 (223)
T ss_dssp ---------------------------
T ss_pred CCCCCCCcc---cccCCcceecCCccC
Confidence 467998665 999999999999865
No 29
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=23.81 E-value=38 Score=27.49 Aligned_cols=15 Identities=53% Similarity=1.271 Sum_probs=10.0
Q ss_pred CCCCCCCC---------CCCchhh
Q 013033 62 CGYGSNCR---------FNHPAYA 76 (451)
Q Consensus 62 C~~G~~C~---------F~H~~~~ 76 (451)
|+||..|- |+|+.+.
T Consensus 17 C~yG~~CYRkNp~H~~~fsHP~d~ 40 (89)
T 2kqb_A 17 CMYGANCYRKNPVHFQHFSHPGDS 40 (89)
T ss_dssp CTTTTCCCCCCTTHHHHEECTTST
T ss_pred CCCCcccccCChHHHhhccCCCcc
Confidence 66666774 7887654
Done!