Your job contains 1 sequence.
>013035
MYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQ
DYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGH
EKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICD
TISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAV
VVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSIL
ASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMG
ARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVL
IIVGSIIELRRSYQAYNVMPSLSKALRRYGV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013035
(451 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2065868 - symbol:SCY2 "SECY HOMOLOG 2" species... 1948 2.8e-201 1
UNIPROTKB|P0AGA2 - symbol:secY species:83333 "Escherichia... 396 8.0e-37 1
TIGR_CMR|CPS_0621 - symbol:CPS_0621 "preprotein transloca... 387 7.2e-36 1
TIGR_CMR|SO_0251 - symbol:SO_0251 "preprotein translocase... 382 2.4e-35 1
UNIPROTKB|P78283 - symbol:secY "Protein translocase subun... 378 6.5e-35 1
TIGR_CMR|VC_2576 - symbol:VC_2576 "preprotein translocase... 378 6.5e-35 1
TIGR_CMR|CBU_0258 - symbol:CBU_0258 "preprotein transloca... 375 1.3e-34 1
TIGR_CMR|CHY_2289 - symbol:CHY_2289 "preprotein transloca... 365 1.5e-33 1
TIGR_CMR|DET_0494 - symbol:DET_0494 "preprotein transloca... 361 4.1e-33 1
TIGR_CMR|SPO_0506 - symbol:SPO_0506 "preprotein transloca... 359 6.7e-33 1
TAIR|locus:2054038 - symbol:SCY1 "AT2G18710" species:3702... 355 3.7e-32 1
TIGR_CMR|GSU_2837 - symbol:GSU_2837 "preprotein transloca... 340 6.9e-31 1
NCBI_NP|NP_354903.2 - symbol:prlA "preprotein translocase... 338 1.1e-30 1
UNIPROTKB|P25014 - symbol:secY "Protein translocase subun... 331 8.0e-30 1
UNIPROTKB|P0A5Z2 - symbol:secY "Protein translocase subun... 329 1.0e-29 1
TIGR_CMR|ECH_0428 - symbol:ECH_0428 "preprotein transloca... 325 2.7e-29 1
TIGR_CMR|CJE_1856 - symbol:CJE_1856 "preprotein transloca... 324 3.4e-29 1
TIGR_CMR|BA_2734 - symbol:BA_2734 "preprotein translocase... 321 7.1e-29 1
TIGR_CMR|BA_0130 - symbol:BA_0130 "preprotein translocase... 320 9.1e-29 1
TIGR_CMR|APH_0299 - symbol:APH_0299 "preprotein transloca... 316 3.3e-28 1
TIGR_CMR|NSE_0285 - symbol:NSE_0285 "preprotein transloca... 251 5.1e-19 1
>TAIR|locus:2065868 [details] [associations]
symbol:SCY2 "SECY HOMOLOG 2" species:3702 "Arabidopsis
thaliana" [GO:0005886 "plasma membrane" evidence=ISM] [GO:0009306
"protein secretion" evidence=ISS] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0015031 "protein
transport" evidence=IEA] [GO:0015450 "P-P-bond-hydrolysis-driven
protein transmembrane transporter activity" evidence=IEA;ISS]
[GO:0016020 "membrane" evidence=IEA;ISS] [GO:0009526 "plastid
envelope" evidence=IDA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide
biosynthetic process" evidence=RCA] InterPro:IPR002208 Pfam:PF00344
PANTHER:PTHR10906 GO:GO:0016021 EMBL:CP002685 GO:GO:0015031
GO:GO:0031969 GO:GO:0009535 EMBL:AC007071 GO:GO:0009526
eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 EMBL:AY062590 EMBL:AY093354 EMBL:BX820289
IPI:IPI00524025 PIR:H84721 RefSeq:NP_180711.4 UniGene:At.27291
ProteinModelPortal:F4IQV7 SMR:F4IQV7 PRIDE:F4IQV7
EnsemblPlants:AT2G31530.1 GeneID:817711 KEGG:ath:AT2G31530
TAIR:At2g31530 HOGENOM:HOG000241422 InParanoid:Q9SIQ4 OMA:YIPFNIN
GO:GO:0033097 Uniprot:F4IQV7
Length = 575
Score = 1948 (690.8 bits), Expect = 2.8e-201, P = 2.8e-201
Identities = 367/450 (81%), Positives = 414/450 (92%)
Query: 2 YKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQD 61
++NRFL+F+R+SSVLN AAE FFKSEIRRRLFVTAVL+V+SR+GYFIPLPGFDRRLIPQD
Sbjct: 126 FRNRFLDFVRISSVLNTAAERFFKSEIRRRLFVTAVLLVLSRVGYFIPLPGFDRRLIPQD 185
Query: 62 YLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHE 121
YLSFVSGSV+ELG+FGAE+KLS FQLG+SPQI+ASI+MQVLCH++PSLV+LRKEGLDGHE
Sbjct: 186 YLSFVSGSVEELGEFGAEIKLSLFQLGLSPQIIASIIMQVLCHVLPSLVKLRKEGLDGHE 245
Query: 122 KIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDT 181
KIKSYIWW+S FAI+EA++VA SL YS++AA+ VKHVM+T+ LLVCGAMTM+W+CDT
Sbjct: 246 KIKSYIWWLSFFFAIVEALVVAYTSLQYSVFAATAQVKHVMMTSSLLVCGAMTMTWLCDT 305
Query: 182 ISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVV 241
ISESGFG GSSLIICVGILTGYTETL+KML+Q+ GS W P++LGLLG+FT+VTM+AVV
Sbjct: 306 ISESGFGHGSSLIICVGILTGYTETLHKMLNQISGSFSNWLPYLLGLLGIFTVVTMFAVV 365
Query: 242 VTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILA 301
VTEGCRK+KLQYYGFKLASA+RE SPITEVEPYIPFNINP+GMQPVLTTTYLLAFPSILA
Sbjct: 366 VTEGCRKIKLQYYGFKLASASREGSPITEVEPYIPFNINPAGMQPVLTTTYLLAFPSILA 425
Query: 302 SILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGA 361
SILGSPF ++KEILNPE++VGA PWVYY+IYAFFVFLFNIFDIANLPKEIADYLNKMGA
Sbjct: 426 SILGSPFLLNMKEILNPESTVGAPPWVYYSIYAFFVFLFNIFDIANLPKEIADYLNKMGA 485
Query: 362 RIPNVKPGKATIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLI 421
RIPN+KPGKATIEYLTKIQASTRFWGG DHYLR IN+GFSIGFTSVLI
Sbjct: 486 RIPNIKPGKATIEYLTKIQASTRFWGGLLLSFLATASTVLDHYLRSINQGFSIGFTSVLI 545
Query: 422 IVGSIIELRRSYQAYNVMPSLSKALRRYGV 451
IVGSIIELRRSY AYNVMPSLSKAL+RYGV
Sbjct: 546 IVGSIIELRRSYHAYNVMPSLSKALKRYGV 575
>UNIPROTKB|P0AGA2 [details] [associations]
symbol:secY species:83333 "Escherichia coli K-12"
[GO:0043952 "protein transport by the Sec complex" evidence=IMP]
[GO:0065002 "intracellular protein transmembrane transport"
evidence=IMP] [GO:0006886 "intracellular protein transport"
evidence=IMP] [GO:0016021 "integral to membrane" evidence=IEA;IDA]
[GO:0005886 "plasma membrane" evidence=IEA;IDA] [GO:0005622
"intracellular" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344
PIRSF:PIRSF004557 PROSITE:PS00755 PROSITE:PS00756 EMBL:X01563
PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:U18997 GO:GO:0005622 GO:GO:0065002 TCDB:3.A.5.1.1 PDB:3J01
PDBsum:3J01 eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 HOGENOM:HOG000080585
OMA:FIMWLGE InterPro:IPR026593 GO:GO:0043952 PDB:2AKH PDB:2AKI
PDBsum:2AKH PDBsum:2AKI PIR:A04473 RefSeq:NP_417759.1
RefSeq:YP_492132.1 ProteinModelPortal:P0AGA2 SMR:P0AGA2
DIP:DIP-59302N IntAct:P0AGA2 PRIDE:P0AGA2
EnsemblBacteria:EBESCT00000000476 EnsemblBacteria:EBESCT00000018444
GeneID:12934410 GeneID:947799 KEGG:ecj:Y75_p3876 KEGG:eco:b3300
PATRIC:32122032 EchoBASE:EB0759 EcoGene:EG10766 KO:K03076
ProtClustDB:PRK09204 BioCyc:EcoCyc:SECY
BioCyc:ECOL316407:JW3262-MONOMER EvolutionaryTrace:P0AGA2
Genevestigator:P0AGA2 Uniprot:P0AGA2
Length = 443
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 125/433 (28%), Positives = 207/433 (47%)
Query: 27 EIRRRL-FVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF---GAELKL 82
E++RRL FV LIV RIG FIP+PG D ++ + L G++ E+ + GA +
Sbjct: 18 ELKRRLLFVIGALIVF-RIGSFIPIPGIDAAVLAK-LLEQQRGTIIEMFNMFSGGALSRA 75
Query: 83 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIV 142
S F LGI P I ASI++Q+L + P+L +++KEG G KI Y + +L AI +++ +
Sbjct: 76 SIFALGIMPYISASIIIQLLTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGI 135
Query: 143 ACY--SLPYSIYAASHSVKHVMVTAFL-LVCGAMTMSWICDTISESGFGQGSSLIICVGI 199
A ++P + TA + LV G M + W+ + I+E G G G S+II GI
Sbjct: 136 ATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGI 195
Query: 200 LTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLA 259
+ G + + Q + + +L + VF VT + V V G R++ + Y A
Sbjct: 196 VAGLPPAIAHTIEQARQGDLHFLVLLLVAVLVFA-VTFFVVFVERGQRRIVVNY-----A 249
Query: 260 SAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPF-WQHVKEILNP 318
+ ++P +N +G+ P + + ++ FP+ +AS G W + I +
Sbjct: 250 KRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGWNWLTTI-SL 308
Query: 319 ETSVGARPWVYYTIYAFFVFLFNIFDIANL--PKEIADYLNKMGARIPNVKPGKATIEYL 376
G +P +Y +YA + F F A + P+E AD L K GA +P ++PG+ T +Y+
Sbjct: 309 YLQPG-QP-LYVLLYASAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPGEQTAKYI 366
Query: 377 TKIQASTRFWGGXXXXXXXXXXXXXDHYLR-RINEGFSIGFTSVLIIVGSIIELRRSYQA 435
K+ G ++R + F G TS+LI+V I++ Q
Sbjct: 367 DKVMTRLTLVGALYITFICLI----PEFMRDAMKVPFYFGGTSLLIVVVVIMDFMAQVQT 422
Query: 436 YNVMPSLSKALRR 448
+ AL++
Sbjct: 423 LMMSSQYESALKK 435
>TIGR_CMR|CPS_0621 [details] [associations]
symbol:CPS_0621 "preprotein translocase, SecY subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006886
"intracellular protein transport" evidence=ISS] [GO:0008565
"protein transporter activity" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] [GO:0016020 "membrane" evidence=ISS]
HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557
PROSITE:PS00755 PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021
GO:GO:0005886 GO:GO:0006605 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0065002 eggNOG:COG0201
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 HOGENOM:HOG000080585 OMA:FIMWLGE
InterPro:IPR026593 GO:GO:0043952 KO:K03076 RefSeq:YP_267371.1
ProteinModelPortal:Q488Z3 STRING:Q488Z3 GeneID:3521449
KEGG:cps:CPS_0621 PATRIC:21464569
BioCyc:CPSY167879:GI48-708-MONOMER Uniprot:Q488Z3
Length = 445
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 121/437 (27%), Positives = 201/437 (45%)
Query: 26 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF---GAELKL 82
SE+++RL+ V +V+ R+G F+P+PG D ++ Q + G++ E+ + GA +
Sbjct: 19 SELKQRLWFVFVALVVLRLGSFVPIPGIDAAVLAQ-FFEQQKGTIVEMFNMFSGGALERA 77
Query: 83 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIV 142
S LGI P I ASI+MQ+L + P++ +L+KEG G KI Y + +L A ++++ +
Sbjct: 78 SVLALGIMPYISASIIMQLLTVVHPAMAELKKEGEAGRRKISQYTRYGTLVLATVQSIAI 137
Query: 143 ACYSLPYSIYAA--SHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGIL 200
A SLP + + L+ G M + W+ + I+E G G G S+II GI+
Sbjct: 138 A-RSLPEMMQGLVINAGFSFYFTAVISLITGTMFLMWLGEQITERGIGNGISIIIFAGIV 196
Query: 201 TGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTI-VTMWAVVVTEGCRKVKLQYYGFKLA 259
G + + + +L L+GV VT V V G R++ + Y A
Sbjct: 197 AGMPSAVGQTAEMARQGELHL--LVLLLIGVVVFAVTFLVVFVERGQRRIVVNY-----A 249
Query: 260 SAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGS---P---FWQHVK 313
+ ++P +N +G+ P + + L+ FP LAS G P F Q V
Sbjct: 250 KRQQGRKVFAAQSTHLPLKVNMAGVIPPIFASSLILFPGTLASWFGQGDGPVADFLQGVS 309
Query: 314 EILNPETSVGARPWVYYTIYAFFVFLFNIFDIANL--PKEIADYLNKMGARIPNVKPGKA 371
++P +P +Y + A + F F A + P+E AD L K GA IP ++PG+
Sbjct: 310 GAMSP-----GQP-LYVMMLAAAIIFFCFFYTALVFNPRETADNLKKSGAFIPGIRPGEQ 363
Query: 372 TIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSIIELRR 431
T +Y+ K+ G + + F G TS+LIIV I++
Sbjct: 364 TSKYIDKVMTRLTLCGAAYITFVCLVP---QFMIMAWDVQFYFGGTSLLIIVVVIMDFMA 420
Query: 432 SYQAYNVMPSLSKALRR 448
Q + + L++
Sbjct: 421 QVQTHMMSHQYDNVLKK 437
>TIGR_CMR|SO_0251 [details] [associations]
symbol:SO_0251 "preprotein translocase, SecY subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0006886
"intracellular protein transport" evidence=ISS] [GO:0008565
"protein transporter activity" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_01465 InterPro:IPR002208
Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00755 PROSITE:PS00756
PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886 GO:GO:0006605
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0065002
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 HOGENOM:HOG000080585 OMA:FIMWLGE
InterPro:IPR026593 GO:GO:0043952 KO:K03076 ProtClustDB:PRK09204
RefSeq:NP_715891.1 ProteinModelPortal:Q8EK50 GeneID:1168134
KEGG:son:SO_0251 PATRIC:23520195 Uniprot:Q8EK50
Length = 446
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 118/432 (27%), Positives = 195/432 (45%)
Query: 26 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF-----GAEL 80
SE++ RL I++ R G F+P+PG D ++ + + SG++ LG F GA
Sbjct: 16 SELKARLLFVIGAIIVFRAGSFVPIPGIDAAVLAELFAQ-QSGTI--LGMFNMFSGGALE 72
Query: 81 KLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAV 140
+ S F LGI P I ASI+MQ+L + P+L +L+KEG G +KI Y W +L ++V
Sbjct: 73 RASIFALGIMPYISASIIMQLLTVVHPALAELKKEGESGRKKISQYTRWGTLVLGTFQSV 132
Query: 141 IVACYSLPYSI--YAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVG 198
+A LP + + V LV G M + W+ + I+E G G G S++I G
Sbjct: 133 GIAT-GLPNLVPGLVVNIGFGFYFVAVVSLVTGTMFLMWLGEQITERGIGNGISILIFAG 191
Query: 199 ILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKL 258
I+ G + + Q + +L + +F VT + V V G R++ + Y
Sbjct: 192 IVAGLPSAIGQTAEQARQGDLNVLVLLLLAVIIFA-VTYFVVFVERGQRRIVVNY----- 245
Query: 259 ASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNP 318
A + ++P IN +G+ P + + ++ FP LA G + + + +
Sbjct: 246 AKRQQGRKVFAAQSTHLPLKINMAGVIPPIFASSIILFPGTLAQWFGQN--ESMSWLSDF 303
Query: 319 ETSVGARPWVYYTIYAFFVFLFNIFDIANL--PKEIADYLNKMGARIPNVKPGKATIEYL 376
+V +Y +YA + F F A + P+E AD L K GA IP ++PG+ T Y+
Sbjct: 304 SLAVSPGQPLYSLLYAAAIIFFCFFYTALVFNPRETADNLKKSGAFIPGIRPGEQTSRYI 363
Query: 377 TKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAY 436
K+ G + L F G TS+LI+V I++ Q +
Sbjct: 364 DKVMTRLTLAGALYITFICLIP---EFMLIAWKVQFYFGGTSLLIMVVVIMDFMAQVQTH 420
Query: 437 NVMPSLSKALRR 448
+ +++
Sbjct: 421 MMSHQYESVMKK 432
>UNIPROTKB|P78283 [details] [associations]
symbol:secY "Protein translocase subunit SecY"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0009306 "protein secretion" evidence=ISS] HAMAP:MF_01465
InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00755
PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0009306 EMBL:Y08367
EMBL:Y07817 eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 OMA:FIMWLGE InterPro:IPR026593
KO:K03076 ProtClustDB:PRK09204 PIR:B82057 RefSeq:NP_232204.1
ProteinModelPortal:P78283 DNASU:2615593 GeneID:2615593
KEGG:vch:VC2576 PATRIC:20084178 Uniprot:P78283
Length = 444
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 114/433 (26%), Positives = 197/433 (45%)
Query: 26 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF---GAELKL 82
SE++ RLF +++ R G F+P+PG D ++ + + G++ E+ + GA +
Sbjct: 17 SELKSRLFFVIGALLVFRAGSFVPIPGIDAAVLAELFEQ-QKGTIVEMFNMFSGGALERA 75
Query: 83 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIV 142
S LGI P I ASI++Q+L + P+L +L+KEG G KI Y + +L A +A+ +
Sbjct: 76 SILALGIMPYISASIVVQLLTVVHPALAELKKEGEAGRRKISQYTRYGTLVLATFQAIGI 135
Query: 143 ACYSLPYSI--YAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGIL 200
A LP + ++ LV G M + W+ + I+E G G G S++I GI+
Sbjct: 136 AT-GLPNMVNNLVVIDQTMFTLIATVSLVTGTMFLMWLGEQITERGIGNGISILIFAGIV 194
Query: 201 TGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTE-GCRKVKLQYYGFKLA 259
G + + + + Q + +L L+ V ++ VV E G R++ + Y A
Sbjct: 195 AGLPKAIGQTIEQARQGELH--VLLLLLIAVLAFAVIYFVVFMERGQRRIVVNY-----A 247
Query: 260 SAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPE 319
+ ++P IN +G+ P + + ++ FP LA G L +
Sbjct: 248 KRQQGRKVFAAQSTHLPLKINMAGVIPAIFASSIILFPGTLAQWFGQNGESSTFGWLT-D 306
Query: 320 TSVGARPW--VYYTIYAFFVFLFNIFDIANL--PKEIADYLNKMGARIPNVKPGKATIEY 375
S+ P +Y +YA + F F A + P+E AD L K GA +P ++PG+ T +Y
Sbjct: 307 VSLALSPGQPLYVMLYAAAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPGEQTAKY 366
Query: 376 LTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQA 435
+ K+ G + + N F G TS+LI+V I++ Q
Sbjct: 367 IDKVMTRLTLAGALYITFICLIP---EFMMVAWNVRFYFGGTSLLIVVVVIMDFMAQVQT 423
Query: 436 YNVMPSLSKALRR 448
+ + L++
Sbjct: 424 HLMSHQYESVLKK 436
>TIGR_CMR|VC_2576 [details] [associations]
symbol:VC_2576 "preprotein translocase, SecY subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_01465 InterPro:IPR002208
Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00755 PROSITE:PS00756
PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0009306 EMBL:Y08367 EMBL:Y07817
eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 OMA:FIMWLGE InterPro:IPR026593
KO:K03076 ProtClustDB:PRK09204 PIR:B82057 RefSeq:NP_232204.1
ProteinModelPortal:P78283 DNASU:2615593 GeneID:2615593
KEGG:vch:VC2576 PATRIC:20084178 Uniprot:P78283
Length = 444
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 114/433 (26%), Positives = 197/433 (45%)
Query: 26 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF---GAELKL 82
SE++ RLF +++ R G F+P+PG D ++ + + G++ E+ + GA +
Sbjct: 17 SELKSRLFFVIGALLVFRAGSFVPIPGIDAAVLAELFEQ-QKGTIVEMFNMFSGGALERA 75
Query: 83 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIV 142
S LGI P I ASI++Q+L + P+L +L+KEG G KI Y + +L A +A+ +
Sbjct: 76 SILALGIMPYISASIVVQLLTVVHPALAELKKEGEAGRRKISQYTRYGTLVLATFQAIGI 135
Query: 143 ACYSLPYSI--YAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGIL 200
A LP + ++ LV G M + W+ + I+E G G G S++I GI+
Sbjct: 136 AT-GLPNMVNNLVVIDQTMFTLIATVSLVTGTMFLMWLGEQITERGIGNGISILIFAGIV 194
Query: 201 TGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTE-GCRKVKLQYYGFKLA 259
G + + + + Q + +L L+ V ++ VV E G R++ + Y A
Sbjct: 195 AGLPKAIGQTIEQARQGELH--VLLLLLIAVLAFAVIYFVVFMERGQRRIVVNY-----A 247
Query: 260 SAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPE 319
+ ++P IN +G+ P + + ++ FP LA G L +
Sbjct: 248 KRQQGRKVFAAQSTHLPLKINMAGVIPAIFASSIILFPGTLAQWFGQNGESSTFGWLT-D 306
Query: 320 TSVGARPW--VYYTIYAFFVFLFNIFDIANL--PKEIADYLNKMGARIPNVKPGKATIEY 375
S+ P +Y +YA + F F A + P+E AD L K GA +P ++PG+ T +Y
Sbjct: 307 VSLALSPGQPLYVMLYAAAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPGEQTAKY 366
Query: 376 LTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQA 435
+ K+ G + + N F G TS+LI+V I++ Q
Sbjct: 367 IDKVMTRLTLAGALYITFICLIP---EFMMVAWNVRFYFGGTSLLIVVVVIMDFMAQVQT 423
Query: 436 YNVMPSLSKALRR 448
+ + L++
Sbjct: 424 HLMSHQYESVLKK 436
>TIGR_CMR|CBU_0258 [details] [associations]
symbol:CBU_0258 "preprotein translocase, SecY subunit"
species:227377 "Coxiella burnetii RSA 493" [GO:0005887 "integral to
plasma membrane" evidence=ISS] [GO:0015450
"P-P-bond-hydrolysis-driven protein transmembrane transporter
activity" evidence=ISS] [GO:0015627 "type II protein secretion
system complex" evidence=ISS] [GO:0015628 "protein secretion by the
type II secretion system" evidence=ISS] HAMAP:MF_01465
InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00756
PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886 GO:GO:0006605
GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0065002
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 HOGENOM:HOG000080585 OMA:FIMWLGE
InterPro:IPR026593 GO:GO:0043952 KO:K03076 ProtClustDB:PRK09204
RefSeq:NP_819302.1 ProteinModelPortal:Q83EQ6 GeneID:1208139
KEGG:cbu:CBU_0258 PATRIC:17929209
BioCyc:CBUR227377:GJ7S-264-MONOMER Uniprot:Q83EQ6
Length = 442
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 111/430 (25%), Positives = 197/430 (45%)
Query: 26 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF--GAELKLS 83
SE++RRL + I++ R+G +IP+PG D + + +G + F GA +++
Sbjct: 16 SELKRRLLFVLIGIIVYRLGAYIPVPGLDPSRLAALFHQHETGFLGMFNMFSGGALSRMT 75
Query: 84 FFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVA 143
F LG+ P I +SI++Q+ I P + LRKEG G KI Y + ++ ++L++ +
Sbjct: 76 IFALGVMPYISSSIIVQMYSQISPKMQALRKEGEAGRRKINQYTRYGTVILSLLQSAFMT 135
Query: 144 CYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGY 203
+ L S + ++ LV G M + W+ + ++E G G G SLII I + +
Sbjct: 136 KW-LVSSGTVINPNLGFYFTAIVTLVTGTMFLMWLGEQMTERGVGNGISLIIFASIASRF 194
Query: 204 TETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAR 263
+ ++ +Q+ + +L L+ V +VT+ V R++ + Y A +
Sbjct: 195 PAAIGQVFTQVRQGQMSVLILLL-LIAVIVLVTLVVVFFERAQRRITINY-----AKRQQ 248
Query: 264 EDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVG 323
++P IN +G+ PV+ ++ FP +A + S ++ S G
Sbjct: 249 GRKLYAAQSSHLPLKINMAGVIPVIFAQSIILFPGAVAKFMSSVKGLGWLNDVSLALSYG 308
Query: 324 ARPWVYYTIYAFFVFLFNIFDIANL--PKEIADYLNKMGARIPNVKPGKATIEYLTKIQA 381
+P Y ++A V F+ F A + PKE AD L K GA IP ++PG+ T Y+ K+
Sbjct: 309 -QP-AYIVVFAIAVIFFSFFYTALVFNPKETADNLKKSGAFIPGIRPGEQTANYIDKVMT 366
Query: 382 STRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPS 441
G + N F G TS+LI+V I++ QA+ +
Sbjct: 367 RLTLVGSVYLALVALLP---QFLILAWNVPFYFGGTSLLIVVVVIMDFMAQVQAHLMSHQ 423
Query: 442 LSKALRRYGV 451
+++ G+
Sbjct: 424 YESLMKKSGL 433
>TIGR_CMR|CHY_2289 [details] [associations]
symbol:CHY_2289 "preprotein translocase, SecY subunit"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006886 "intracellular protein transport" evidence=ISS]
[GO:0008565 "protein transporter activity" evidence=ISS]
HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557
PROSITE:PS00755 PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021
GO:GO:0005886 GO:GO:0006605 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0005622 GO:GO:0065002 eggNOG:COG0201 Gene3D:1.10.3370.10
InterPro:IPR023201 SUPFAM:SSF103491 TIGRFAMs:TIGR00967 OMA:FIMWLGE
InterPro:IPR026593 GO:GO:0043952 KO:K03076 ProtClustDB:PRK09204
HOGENOM:HOG000080586 RefSeq:YP_361098.1 ProteinModelPortal:Q3A9T6
STRING:Q3A9T6 GeneID:3727431 KEGG:chy:CHY_2289 PATRIC:21277649
BioCyc:CHYD246194:GJCN-2288-MONOMER Uniprot:Q3A9T6
Length = 419
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 114/429 (26%), Positives = 204/429 (47%)
Query: 16 LNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLS-FVSGSVDELG 74
L NA ++ E++ RL T +++++ RIG IP+PG + + + S + G D +
Sbjct: 5 LRNAMKA---KELKSRLLFTLLMLLVFRIGAHIPVPGINLARMEELIQSGTILGFFDVIS 61
Query: 75 DFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGF 134
GA K + F + I+P I ASI+MQ+L ++P L +L KEG +G KI Y+ + ++
Sbjct: 62 G-GAFKKFTIFAMSITPYINASIIMQLLTVVIPYLEKLAKEGEEGRRKITEYVRYGTVIL 120
Query: 135 AILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLI 194
A ++ +A L ++ + + + A L G + W+ + I+E G G G SLI
Sbjct: 121 AFIQGFFMAI-GLRSALN--NPGILTYLYVALALTAGTAFLMWLGEQITEKGIGNGISLI 177
Query: 195 ICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVT-EGCRKVKLQY 253
I GI++ ++ ++ + + ++ L V + ++AVVV E R++ +QY
Sbjct: 178 IFAGIVSRIPGSIKTIIDYVSAGTANILNVLI--LAVIAVAAIYAVVVVNEAQRRIPVQY 235
Query: 254 YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILG-SPFWQHV 312
++ T ++P +N +G+ P++ + LL FP +A + F Q V
Sbjct: 236 -AKRVVGRRVYGGQST----HLPIKVNQAGVIPIIFASSLLMFPITIAGWFPQNSFAQWV 290
Query: 313 KEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANL--PKEIADYLNKMGARIPNVKPGK 370
+ T + +YA + F F A + P +IA+ L K G IP ++PG+
Sbjct: 291 LKYFGWGTVINT------ILYALLIIGFTYFYTAIIMNPLDIAENLKKYGGFIPGIRPGR 344
Query: 371 ATIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSIIELR 430
T EY+ K+ + F G R N F G T++LI+VG ++
Sbjct: 345 PTAEYIDKVMSRVTFAGAVFLAFIAILPNIVMAIARIPNVTF--GGTALLIVVGVALDTM 402
Query: 431 RSYQAYNVM 439
+ ++Y +M
Sbjct: 403 KQLESYLLM 411
>TIGR_CMR|DET_0494 [details] [associations]
symbol:DET_0494 "preprotein translocase, SecY subunit"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006886
"intracellular protein transport" evidence=ISS] [GO:0008565
"protein transporter activity" evidence=ISS] [GO:0016020 "membrane"
evidence=ISS] HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344
PIRSF:PIRSF004557 PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021
GO:GO:0005886 GO:GO:0006605 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0065002 eggNOG:COG0201
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 HOGENOM:HOG000080585 OMA:FIMWLGE
InterPro:IPR026593 GO:GO:0043952 KO:K03076 ProtClustDB:PRK09204
RefSeq:YP_181238.1 ProteinModelPortal:Q3Z961 STRING:Q3Z961
GeneID:3230236 KEGG:det:DET0494 PATRIC:21608057
BioCyc:DETH243164:GJNF-494-MONOMER Uniprot:Q3Z961
Length = 438
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 119/438 (27%), Positives = 198/438 (45%)
Query: 15 VLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELG 74
+L ++F ++RRRL +T ++V +R +PLPG D + QD +G++ L
Sbjct: 10 LLQAMIDAFSLPDLRRRLLITLGILVAARFIAHVPLPGVDSAAL-QDLFD-QNGALGMLD 67
Query: 75 DF--GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISL 132
F GA S LG+ P I ASI+M +L ++P L L KEG G KI + W+++
Sbjct: 68 LFSGGAMRYFSVAALGVYPYITASIIMTLLTPVIPKLTALSKEGEAGRNKINTITHWLAV 127
Query: 133 GFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSS 192
A L A + + V + +V G M M W+ + I+ G G G S
Sbjct: 128 PTAALAGYSQLLLLQREGAVAQTEPLAAVAIV-LSIVAGTMFMVWLGEQITNYGIGNGIS 186
Query: 193 LIICVGILTGYTETLYKML---SQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKV 249
LII GI+ G +T+ + L Q G +V ++ + T V + V+ TE R++
Sbjct: 187 LIIFAGIVAGLPDTIGRGLMASDQFAGLAV------YAIMALLTTVLI--VIFTEAHRRI 238
Query: 250 KLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILAS--ILGS- 306
+QY + S E +IP +N +GM P++ + L+ P ++AS + GS
Sbjct: 239 PVQYAQTVIRSGKMYRRG---GESHIPLRVNSAGMIPLIFASALVMLPGLVASYFMAGST 295
Query: 307 --P-FWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFD--IANLPKEIADYLNKMGA 361
P FW + I + S+ VY+ +Y F +F F + ++I L + G
Sbjct: 296 EDPNFWNTIYNIFSSSASMPGG-LVYWGLYFFMTIIFAFFYTMVTFEQQDIPGTLQRQGG 354
Query: 362 RIPNVKPGKATIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLI 421
+P ++PGK T +YL+ + W G + I + + +LI
Sbjct: 355 FVPGIRPGKMTDQYLSGVIGRIT-WAGALFLGFVAIMPFIAREVTGI-QVIQLSSFGMLI 412
Query: 422 IVGSIIELRRSYQAYNVM 439
+VG ++ + +A VM
Sbjct: 413 VVGVALDTMKQLEAQLVM 430
>TIGR_CMR|SPO_0506 [details] [associations]
symbol:SPO_0506 "preprotein translocase, SecY subunit"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0009306 "protein
secretion" evidence=ISS] [GO:0015450 "P-P-bond-hydrolysis-driven
protein transmembrane transporter activity" evidence=ISS]
HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557
PROSITE:PS00755 PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021
GO:GO:0005886 GO:GO:0006605 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0005622 GO:GO:0065002 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 HOGENOM:HOG000080585
OMA:FIMWLGE InterPro:IPR026593 GO:GO:0043952 KO:K03076
ProtClustDB:PRK09204 RefSeq:YP_165768.1 ProteinModelPortal:Q5LW37
GeneID:3194103 KEGG:sil:SPO0506 PATRIC:23374275 Uniprot:Q5LW37
Length = 455
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 109/417 (26%), Positives = 192/417 (46%)
Query: 26 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVS---GSVDELGDFGAELKL 82
+++R R+ T L+++ R+G FIP+PG D + ++++ G + + GA ++
Sbjct: 21 TDLRNRILFTLGLLIVYRLGTFIPVPGIDGVAL-REFMEQAGQGIGGMVSMFTGGALGRM 79
Query: 83 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIV 142
F LGI P I ASI++Q+L +VPSL QL+KEG G +KI Y ++ A ++A +
Sbjct: 80 GIFALGIMPYISASIIVQLLTAMVPSLEQLKKEGEQGRKKINQYTRLGTVALATVQAYGL 139
Query: 143 ACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTG 202
A SL A + T LV G M + W+ + I+ G G G SLII VGI+
Sbjct: 140 AV-SLESGDLATEPGMYFRFATMITLVGGTMFLMWLGEQITARGIGNGVSLIIFVGIIAE 198
Query: 203 YTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAA 262
L + + ++ + +L V ++T + V + RK+ +QY ++
Sbjct: 199 VPAALAQFFASGRSGAISPAVIIAIILMVIAVIT-FVVFMERALRKIHIQYPRRQVGMKV 257
Query: 263 REDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSV 322
+ ++P +NP+G+ P + + LL P +++ V L
Sbjct: 258 YDGG-----SSHLPVKVNPAGVIPAIFASSLLLLPVTISTFSSGAANGPVMSWLLANFGP 312
Query: 323 GARPWVYY--TIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQ 380
G ++ + ++ FF + + F+++ P ++A L +P ++PGK T EYL +
Sbjct: 313 GQPLYLLFFVSMIVFFAYFYT-FNVSFKPDDVAQNLKNQNGFVPGIRPGKKTAEYLEYVV 371
Query: 381 ASTRFWGGXXXXXXXXXXXXXDHYLR-RINEGFSIGFTSVLIIVGSIIELRRSYQAY 436
G +R + N F G TSVLIIV ++ + Q++
Sbjct: 372 NRVLVLGSAYLAAVCLL----PEIMRGQFNVPFYFGGTSVLIIVSVTMDTIQQVQSH 424
>TAIR|locus:2054038 [details] [associations]
symbol:SCY1 "AT2G18710" species:3702 "Arabidopsis
thaliana" [GO:0009306 "protein secretion" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0015031 "protein transport"
evidence=IEA] [GO:0015450 "P-P-bond-hydrolysis-driven protein
transmembrane transporter activity" evidence=IEA;ISS] [GO:0016020
"membrane" evidence=IEA;ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010027 "thylakoid membrane organization"
evidence=ISS] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=RCA] InterPro:IPR002208 Pfam:PF00344 PROSITE:PS00755
PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0009507
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0015031 GO:GO:0010027
GO:GO:0009535 EMBL:AC005724 eggNOG:COG0201 KO:K10956
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 EMBL:U37247 EMBL:AF424550 EMBL:AY058103
EMBL:AY065093 EMBL:BT002632 IPI:IPI00538301 PIR:A57189 PIR:F84567
RefSeq:NP_179461.1 UniGene:At.10218 ProteinModelPortal:Q38885
SMR:Q38885 IntAct:Q38885 STRING:Q38885 PaxDb:Q38885 PRIDE:Q38885
EnsemblPlants:AT2G18710.1 GeneID:816386 KEGG:ath:AT2G18710
TAIR:At2g18710 HOGENOM:HOG000080585 InParanoid:Q38885 OMA:FIMWLGE
PhylomeDB:Q38885 ProtClustDB:CLSN2683056 Genevestigator:Q38885
GermOnline:AT2G18710 InterPro:IPR026593 Uniprot:Q38885
Length = 551
Score = 355 (130.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 119/418 (28%), Positives = 192/418 (45%)
Query: 23 FFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQ--DYLSFVSGSVDELGDFGAEL 80
FFK + + + +SR+G +IPL G +R D S +S ++D G
Sbjct: 133 FFKGPLPGKFLKLLGFLALSRLGIYIPLGGVNREAFVGNLDQNSILS-TLDTFSGGGIG- 190
Query: 81 KLSFFQLGISPQIVASILMQVLCHIVPSLVQL-RKEGLDGHEKIKSYIWWISLGFAILEA 139
+L LGI P I A I+ Q+L + P L L +KEG G +KI Y + S+GFAI++A
Sbjct: 191 RLGICSLGIVPFINAQIVFQLLAQVYPKLQDLQKKEGEAGRKKILQYTRYASVGFAIVQA 250
Query: 140 VIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGI 199
+ Y PY S + V+ + LL G++ ++I + IS+ G G+SL+I I
Sbjct: 251 IGQVFYLRPY---VNDFSTEWVVSSVTLLTLGSVLTTYIGERISDLKLGNGTSLLIFTSI 307
Query: 200 LTGYTETLYKMLSQLLGSSVRWWPFMLGLLGV-FTIVTMWAVVVTEGCRKVKLQYYGFKL 258
++ + + ++ L LG + V F ++ + V V E RK+ L Y
Sbjct: 308 ISYLPASFGRTTAEALQEGNYTG---LGTIVVSFLLLVLGIVYVQEAERKIPLNY----- 359
Query: 259 ASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNP 318
AS + + Y+PF +N +G+ P++ +T LA P+ LA G ++V L P
Sbjct: 360 ASRYTSKAGGLQKSAYLPFKVNSAGVMPIIFSTSSLALPATLARFTGISALKNVAFALTP 419
Query: 319 ETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTK 378
S P + AFF + + + P ++++ L + GA IP V+PGK+T ++
Sbjct: 420 GGSFYL-P-TNILLIAFFNYYYTFLQLD--PDDVSEQLKRQGASIPLVRPGKSTALFIKT 475
Query: 379 IQASTRFWGGXXXXXXXXXXXXXDHYLRRIN-EGFSIGFTSVLIIVGSIIELRRSYQA 435
+ G + GF+ G TSVLI+VG + R QA
Sbjct: 476 VLGRISVLGSAFLAVLAAGPAVVEQITHLTAFRGFA-G-TSVLILVGCATDTARKVQA 531
>TIGR_CMR|GSU_2837 [details] [associations]
symbol:GSU_2837 "preprotein translocase, SecY subunit"
species:243231 "Geobacter sulfurreducens PCA" [GO:0009306 "protein
secretion" evidence=ISS] [GO:0015450 "P-P-bond-hydrolysis-driven
protein transmembrane transporter activity" evidence=ISS]
HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557
PROSITE:PS00755 PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021
GO:GO:0005886 GO:GO:0006605 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0065002 Gene3D:1.10.3370.10
InterPro:IPR023201 SUPFAM:SSF103491 TIGRFAMs:TIGR00967 OMA:FIMWLGE
InterPro:IPR026593 GO:GO:0043952 KO:K03076 ProtClustDB:PRK09204
HOGENOM:HOG000080586 RefSeq:NP_953880.1 ProteinModelPortal:Q749A7
GeneID:2688725 KEGG:gsu:GSU2837 PATRIC:22028521
BioCyc:GSUL243231:GH27-2796-MONOMER Uniprot:Q749A7
Length = 435
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 105/417 (25%), Positives = 195/417 (46%)
Query: 18 NAAESFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF 76
+A ++ F+ E+++R+ + ++ + R+G IP PG D + + + G++ L D
Sbjct: 3 DAFQNIFRIPELKKRVLFSLGMLAVYRVGCHIPTPGIDSNALAH-FFAQARGTLLGLFDM 61
Query: 77 ---GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLG 133
GA KL+ F LGI P I +SI+ Q+L +VPS+ +L KEG G +KI Y + ++
Sbjct: 62 FSGGALEKLTVFALGIMPYISSSIIFQLLTVVVPSIEKLSKEGESGRKKIIQYTRYGTIV 121
Query: 134 FAILEA--VIVACYSL--PYS-IYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFG 188
++++A + + S+ P + + ++T L G + W+ + +SE G G
Sbjct: 122 LSVVQALGISIGLESMRGPAGELVVPNPGWGFRLMTVITLTAGTAFIMWLGEQMSEKGIG 181
Query: 189 QGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRK 248
G SLII GI+ L + + + +L + +F ++ V V G R+
Sbjct: 182 NGISLIIFAGIVARIPTALLNTGRLIKTGQLSLFVILLVVALMFLVIAA-IVYVERGQRR 240
Query: 249 VKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPF 308
+ + Y K + T ++P +N +G+ P + + ++ FP+ +A+ + P+
Sbjct: 241 LPIHYA--KRVVGLKTYGGQTS---HLPLKVNMAGVIPPIFASSIIMFPATVANFINVPW 295
Query: 309 WQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANL-PKEIADYLNKMGARIPNVK 367
Q V + L P ++Y AF +F + + P ++A+ + K G IP ++
Sbjct: 296 VQTVAKSLTPGNLAYE---IFYV--AFIIFFCYFYTAVSFNPVDVAENVKKHGGYIPGIR 350
Query: 368 PGKATIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVG 424
PGK T +YL ++ F G + + N F G T++LI VG
Sbjct: 351 PGKETSDYLDRVLTKLTFAGALYISAVCVLPSVL---VGKFNLPFYFGGTALLIAVG 404
>NCBI_NP|NP_354903.2 [details] [associations]
symbol:prlA "preprotein translocase subunit SecY"
species:176299 "Agrobacterium fabrum str. C58" [GO:0015627 "type II
protein secretion system complex" evidence=ISS] [GO:0015628
"protein secretion by the type II secretion system" evidence=ISS]
REFSEQ:NC_003062 Ncbi:NP_354903
Length = 446
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 115/432 (26%), Positives = 198/432 (45%)
Query: 11 RLSSVLNNAAESFFKSE-IRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGS 69
+L+S LN + +F K+E +++RL+ T +++ R+G IPLPG + Q + +G
Sbjct: 7 QLASNLNFS--TFAKAEDLKKRLWFTLAALLVYRLGTHIPLPGLNPEAYAQAFRGQANGI 64
Query: 70 VDELGDF--GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYI 127
+ F GA +++ F LGI P I ASI++Q++ +VPSL L+KEG G + I Y
Sbjct: 65 LGLFNMFAGGAVERMAIFALGIMPYISASIIVQLMTSVVPSLEALKKEGEAGRKIINQYT 124
Query: 128 WWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGF 187
+ ++ L+A +A + + + T L+ G M + W+ + I+ G
Sbjct: 125 RYGTVLLGTLQAYGIAVGLESGNGLVVDPGMFFRVSTVITLLGGTMFLMWLGEQITSRGI 184
Query: 188 GQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCR 247
G G SLII GI G + L L +L + P +L ++ V V V V R
Sbjct: 185 GNGISLIIFAGIAAGLPKALAGTL-ELGRTGALSTPLILMVVIVAIGVIALIVFVERAQR 243
Query: 248 KVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGS- 306
++ +QY ++ + + ++P +N +G+ P + + LL P+ A G+
Sbjct: 244 RLLIQYPKRQVGNRMFQGDT-----SHLPLKLNTAGVIPAIFASSLLLLPATAAGFAGNT 298
Query: 307 --PFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIP 364
P W I + + +Y + AFF F + + N PK+ AD L K G IP
Sbjct: 299 NLPTWA-TSIIASLQHGQPLFMALYGLLIAFFAFFYTAI-VFN-PKDTADNLKKHGGFIP 355
Query: 365 NVKPGKATIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVG 424
++PG+ T EY+ + G + + R ++G TS+LI+V
Sbjct: 356 GIRPGERTAEYIDYVLTRITVVGAIYLVFVCILP---ETLIARTGIPLALGGTSLLIVVS 412
Query: 425 SIIELRRSYQAY 436
++ Q +
Sbjct: 413 VTLDTVAQIQGH 424
>UNIPROTKB|P25014 [details] [associations]
symbol:secY "Protein translocase subunit SecY" species:2762
"Cyanophora paradoxa" [GO:0033115 "cyanelle thylakoid membrane"
evidence=IDA] HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344
PIRSF:PIRSF004557 PROSITE:PS00755 PROSITE:PS00756 PANTHER:PTHR10906
GO:GO:0016021 GO:GO:0015031 GO:GO:0009528 Gene3D:1.10.3370.10
InterPro:IPR023201 SUPFAM:SSF103491 TIGRFAMs:TIGR00967
InterPro:IPR026593 EMBL:M30487 EMBL:U30821 PIR:T06875
RefSeq:NP_043187.1 ProteinModelPortal:P25014 TCDB:3.A.5.6.1
GeneID:801593 ProtClustDB:CHL00161 GO:GO:0033115 Uniprot:P25014
Length = 492
Score = 331 (121.6 bits), Expect = 8.0e-30, P = 8.0e-30
Identities = 111/381 (29%), Positives = 189/381 (49%)
Query: 26 SEIRRRLFVTAVLIVISRIGYFIPLPG----FDRRLIPQDYLSFVSGSVDELGDFGAELK 81
SEIR+R T LI + RIG F+P+PG FD Q+ ++ L GA L+
Sbjct: 48 SEIRKRAISTLCLIFLIRIGTFLPIPGTALNFDLESFQQNNSRNELANILNLLSGGAFLE 107
Query: 82 LSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLD-GHEKIKSYIWWISLGFAILEAV 140
+ FF LGI P + AS +QVL I+PSL + +KE + + K + ++++ +A ++++
Sbjct: 108 IGFFTLGILPYMNASFFLQVLTKILPSLERFQKEQEEIAQREFKKWTRYLTVIWAFIQSI 167
Query: 141 IVA-CYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGI 199
+++ + PY++ V+V L GA+ + I + I+E G GSSL+I + I
Sbjct: 168 VISWIWIRPYALNWDFFLGLKVVVA---LTLGAVIVMIIAEQITEIGLTNGSSLLIFINI 224
Query: 200 LTGYTETLYKMLSQLLGSSVRW-WPFMLGLLGVFTI--VTMWAVV-VTEGCRKVKLQYYG 255
+ ++ QL S++ W +P + L+ ++ +TM+ ++ + E R V +
Sbjct: 225 IARIPNSI----EQLFNSNINWTFPMISSLILSLSLSFITMFVIIGLQESGRPVPV-LIA 279
Query: 256 FKLASAAREDSPITEVE-----PYIPFNINPSGMQPVL--TTTYLLAFPSILASILGSPF 308
+ A + + PITE E YI F + P+G+ PV+ +T + LA P+ +L
Sbjct: 280 RQEAERQKFNEPITEAERRKTQAYIFFQLLPAGIMPVIFASTIFDLALPAFTNFLLQQGN 339
Query: 309 W--QHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNV 366
W Q +K P S+ + + Y F + + + N PK +A+ LN M A IP V
Sbjct: 340 WGYQLIKSF--PFNSL-FKDFCYLITIMLFSSNYALTIMIN-PKTLAENLNSMNALIPGV 395
Query: 367 KPGKATIEYLTKIQASTRFWG 387
+PG T Y ++ F G
Sbjct: 396 RPGSETKVYSEQLIHRLNFIG 416
>UNIPROTKB|P0A5Z2 [details] [associations]
symbol:secY "Protein translocase subunit SecY" species:1773
"Mycobacterium tuberculosis" [GO:0005576 "extracellular region"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=TAS]
[GO:0040007 "growth" evidence=IMP] [GO:0051701 "interaction with
host" evidence=TAS] [GO:0052059 "evasion or tolerance by symbiont
of host-produced reactive oxygen species" evidence=TAS] [GO:0052572
"response to host immune response" evidence=TAS] HAMAP:MF_01465
InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00755
PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886
GO:GO:0040007 Reactome:REACT_116125 GO:GO:0005576 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0015031
EMBL:BX842574 GO:GO:0052059 TCDB:3.A.5.2.2 eggNOG:COG0201
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 OMA:FIMWLGE InterPro:IPR026593 KO:K03076
ProtClustDB:PRK09204 PIR:G70822 RefSeq:NP_215246.1
RefSeq:NP_335176.1 RefSeq:YP_006514076.1 ProteinModelPortal:P0A5Z2
SMR:P0A5Z2 PRIDE:P0A5Z2 EnsemblBacteria:EBMYCT00000001582
EnsemblBacteria:EBMYCT00000069300 GeneID:13318622 GeneID:888559
GeneID:926050 KEGG:mtc:MT0756.1 KEGG:mtu:Rv0732 KEGG:mtv:RVBD_0732
PATRIC:18123397 TubercuList:Rv0732 HOGENOM:HOG000080586
Uniprot:P0A5Z2
Length = 441
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 94/371 (25%), Positives = 176/371 (47%)
Query: 27 EIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF------GAEL 80
++RR++ T ++++ R+G +P PG + + Q +G ++ GA L
Sbjct: 13 DLRRKILFTLGIVILYRVGAALPSPGVNFPNVQQCIKEASAGEAGQIYSLINLFSGGALL 72
Query: 81 KLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAV 140
KL+ F +G+ P I ASI++Q+L ++P +LRKEG G K+ Y ++++ AIL+A
Sbjct: 73 KLTVFAVGVMPYITASIIVQLLTVVIPRFEELRKEGQAGQSKMTQYTRYLAIALAILQAT 132
Query: 141 IVACYSLPYSIYA-------ASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSL 193
+ + + A S+ ++V ++ GA + W+ + I+E G G G SL
Sbjct: 133 SIVALAANGGLLQGCSLDIIADQSIFTLVVIVLVMTGGAALVMWMGELITERGIGNGMSL 192
Query: 194 IICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQY 253
+I VGI +L G V + I+ + V V +G R++ +QY
Sbjct: 193 LIFVGIAARIPAEGQSILESR-GGVV-----FTAVCAAALIIIVGVVFVEQGQRRIPVQY 246
Query: 254 YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSIL-------ASILGS 306
++ T Y+P +N +G+ PV+ + L+ P ++ + ++G+
Sbjct: 247 -AKRMVGRRMYGGTST----YLPLKVNQAGVIPVIFASSLIYIPHLITQLIRSGSGVVGN 301
Query: 307 PFW-QHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPN 365
+W + V L+ +++ +Y+ + FF + + I P E AD + K G IP
Sbjct: 302 SWWDKFVGTYLSDPSNL-VYIGIYFGLIIFFTYFY--VSITFNPDERADEMKKFGGFIPG 358
Query: 366 VKPGKATIEYL 376
++PG+ T +YL
Sbjct: 359 IRPGRPTADYL 369
>TIGR_CMR|ECH_0428 [details] [associations]
symbol:ECH_0428 "preprotein translocase, SecY subunit"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006886
"intracellular protein transport" evidence=ISS] [GO:0008565
"protein transporter activity" evidence=ISS] HAMAP:MF_01465
InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00755
PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886 GO:GO:0006605
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0005622 GO:GO:0065002
eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 HOGENOM:HOG000080585
OMA:FIMWLGE InterPro:IPR026593 GO:GO:0043952 KO:K03076
ProtClustDB:PRK09204 RefSeq:YP_507246.1 ProteinModelPortal:Q2GH37
STRING:Q2GH37 GeneID:3927650 KEGG:ech:ECH_0428 PATRIC:20576333
BioCyc:ECHA205920:GJNR-429-MONOMER Uniprot:Q2GH37
Length = 432
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 119/429 (27%), Positives = 199/429 (46%)
Query: 22 SFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF----- 76
S+ K + +L+ T ++I R+G +IP+PG + +I D + SV LG F
Sbjct: 5 SWNKDNLLGKLWFTLFCLIIYRLGTYIPIPGINPDVI--DAV-VTKHSVGVLGIFNVFSG 61
Query: 77 GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAI 136
GA +++ F L + P IV+SI++Q+L +P L +LR+ G G KI SYI ++++ F +
Sbjct: 62 GALGRMTVFALNVMPYIVSSIIIQLLSVTIPKLNELRQNGELGRIKINSYIRYMTIFFCM 121
Query: 137 LEAVIVAC----YSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSS 192
++ ++ + SI + +V L+ G M + W+ + I+++G G G S
Sbjct: 122 VQGFVILLGLEKMNTETSIVVIEPGLLFRIVGISSLLGGTMFLLWLGERINKNGIGNGVS 181
Query: 193 LIICVGILTGYTETLYKMLSQLLGSS--VRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVK 250
+II GI+ + M LLG + V + +L LL VF + + + + + RK+
Sbjct: 182 MIIFTGIVAELPGSFSSMF--LLGKNGNVPIFVILLMLL-VFFALLLLIIFIEKSYRKIL 238
Query: 251 LQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASI-LGSPFW 309
+QY ++ + S YIP IN SG+ P + LL P +A+ GSP W
Sbjct: 239 VQYPKRQVKNKLYGSS-----STYIPLKINISGVIPPIFANALLLSPITVANFHQGSP-W 292
Query: 310 QHVKEILNPETSVGARPWV--YYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVK 367
+ + S G ++ Y + FF F + F + KE ++ L K G +P +
Sbjct: 293 S---DFILMHFSSGKLLYMGCYALLIIFFAFFYTTFVFDS--KETSEILKKNGGFVPGKR 347
Query: 368 PGKATIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSII 427
PG T EY + G Y I+ F++G TS LII+ II
Sbjct: 348 PGNGTCEYFNYVIKRLTVLGSIYLTVICIIPELI-RYNYSIS--FTLGGTSFLIIINVII 404
Query: 428 ELRRSYQAY 436
+ Q +
Sbjct: 405 DTFSQVQTH 413
>TIGR_CMR|CJE_1856 [details] [associations]
symbol:CJE_1856 "preprotein translocase, SecY subunit"
species:195099 "Campylobacter jejuni RM1221" [GO:0006886
"intracellular protein transport" evidence=ISS] [GO:0008565
"protein transporter activity" evidence=ISS] [GO:0016020 "membrane"
evidence=ISS] HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344
PIRSF:PIRSF004557 PROSITE:PS00755 PROSITE:PS00756 PANTHER:PTHR10906
GO:GO:0016021 GO:GO:0005886 GO:GO:0006605 GO:GO:0005622
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0065002
eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 HOGENOM:HOG000080585
InterPro:IPR026593 GO:GO:0043952 KO:K03076 ProtClustDB:PRK09204
PIR:D81266 RefSeq:YP_179826.1 ProteinModelPortal:Q5HSA9
STRING:Q5HSA9 GeneID:3232483 KEGG:cjr:CJE1856 PATRIC:20045544
OMA:HIIKIVL BioCyc:CJEJ195099:GJC0-1895-MONOMER Uniprot:Q5HSA9
Length = 421
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 101/421 (23%), Positives = 196/421 (46%)
Query: 28 IRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF--GAELKLSFF 85
+ ++ +T + R+ ++P+PG + +I + + + + ++ F GA + S
Sbjct: 5 LTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQNNALGLFNVFSGGAAERFSII 64
Query: 86 QLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVAC- 144
LGI P I ASI+M++L P++ +++KE D +K I + ++ +++++ VA
Sbjct: 65 SLGIMPYITASIIMELLAATFPNIGKMKKER-DSMQKYMQIIRYATIVITLVQSIGVAIG 123
Query: 145 -YSLPYSIYAASHSVKH----VMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGI 199
SL A + V+ + + A ++ G M + W+ + I++ G G G SLII GI
Sbjct: 124 LQSLHGRGGAGAIMVEDLNMFIALCAISMLAGTMLLMWLGEQITQRGIGNGISLIIFAGI 183
Query: 200 LTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIV--TMWAVVVTE-GCRKVKLQYYGF 256
++G + + Q+ + + L +F ++ T+ ++ E G R++ + Y
Sbjct: 184 VSGIPRAISGTVGQINSGEMNF----LTAFAIFALILITIGVIIYIELGERRIPISYS-- 237
Query: 257 KLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEIL 316
+ ++ I YIP +N SG+ P + + +L FP+ + +P+ Q + + L
Sbjct: 238 RKVVMQNQNKRIMN---YIPIKLNLSGVIPPIFASAILMFPTTILQTSTNPYLQAINDFL 294
Query: 317 NPETSVGARPWVYYTIYAFFVFLFNIF--DIANLPKEIADYLNKMGARIPNVKPGKATIE 374
NP G ++++ + FV F F I K+IA+ L K G IP ++PG+ T
Sbjct: 295 NPN---G---YLFHVLTFLFVIFFAYFYASIVFNAKDIAENLKKQGGFIPGIRPGEGTSS 348
Query: 375 YLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQ 434
YL ++ + G ++ F G TSVLI+V ++ R +
Sbjct: 349 YLNEVASRLTLSGSIYLGLVATLPWVLVKFM---GVPFHFGGTSVLIVVQVALDTMRKIE 405
Query: 435 A 435
A
Sbjct: 406 A 406
>TIGR_CMR|BA_2734 [details] [associations]
symbol:BA_2734 "preprotein translocase, SecY subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0009306 "protein
secretion" evidence=ISS] [GO:0015450 "P-P-bond-hydrolysis-driven
protein transmembrane transporter activity" evidence=ISS]
HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557
PROSITE:PS00755 PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886
GO:GO:0006605 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0005622 GO:GO:0065002
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 InterPro:IPR026593 GO:GO:0043952 KO:K03076
HOGENOM:HOG000080586 OMA:HIIKIVL RefSeq:NP_845084.1
RefSeq:YP_019374.1 RefSeq:YP_028807.1 ProteinModelPortal:Q81PR7
IntAct:Q81PR7 DNASU:1087864 EnsemblBacteria:EBBACT00000009684
EnsemblBacteria:EBBACT00000013719 EnsemblBacteria:EBBACT00000019913
GeneID:1087864 GeneID:2816407 GeneID:2848183 KEGG:ban:BA_2734
KEGG:bar:GBAA_2734 KEGG:bat:BAS2547 ProtClustDB:PRK12907
BioCyc:BANT260799:GJAJ-2612-MONOMER
BioCyc:BANT261594:GJ7F-2705-MONOMER Uniprot:Q81PR7
Length = 434
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 104/423 (24%), Positives = 195/423 (46%)
Query: 26 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIP-QDYLSFVSGSVDELGDFGAELKLSF 84
+EIRR++ T ++++ RIG FIP+P + ++ QD + V G ++ G GA S
Sbjct: 12 AEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKIQDQAN-VLGMLNVFGG-GALQHFSI 69
Query: 85 FQLGISPQIVASILMQVL-CHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVA 143
F +GI+P I ASI++Q+L ++P + K+G G +K + + ++ A ++A+ ++
Sbjct: 70 FAVGITPYITASIIVQLLQMDVIPKFSEWAKQGEMGRKKSAQFTRYFTIILAFIQAIGMS 129
Query: 144 CYSLPYSIYAASHSVKHVMVTAFLLVCGAMT-----MSWICDTISESGFGQGSSLIICVG 198
Y ++ A + T +L + +T + W+ + I+ +G G G S++I G
Sbjct: 130 -YG--FNNIAGGQLITDQSWTTYLFIATVLTAGTAFLLWLGEQITANGVGNGISMLIFAG 186
Query: 199 ILTGYTET---LYKMLSQLLGSSVRWWPFMLGLLG-VFTIVTMWAVVVTEGCRKVKLQYY 254
++ +Y Q G + + L+G V + + + + + RK+ +QY
Sbjct: 187 LVAAIPNVANQIYLQQFQNAGDQLFMHIIKMLLIGLVILAIVVGVIYIQQAVRKIPIQYA 246
Query: 255 GFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKE 314
K S + ++P +N +G+ PV+ + L P +A + V +
Sbjct: 247 --KAVSGNNQYQGAKNT--HLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPD---SSVSK 299
Query: 315 ILNPETSVGARPWVYYTIYAFFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPGKAT 372
L A P + T+Y + F F I P+++A+ L K +P ++PGK+T
Sbjct: 300 WLVANLDF-AHP-IGMTLYVGLIVAFTYFYAFIQVNPEQMAENLKKQNGYVPCIRPGKST 357
Query: 373 IEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSIIELRRS 432
+Y+TKI F G + + IG TS+LIIVG +E ++
Sbjct: 358 EQYVTKILYRLTFIGAIFLGAISILPLVFTK-IATLPPSAQIGGTSLLIIVGVALETMKT 416
Query: 433 YQA 435
++
Sbjct: 417 LES 419
>TIGR_CMR|BA_0130 [details] [associations]
symbol:BA_0130 "preprotein translocase, SecY subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0009306 "protein
secretion" evidence=ISS] [GO:0015450 "P-P-bond-hydrolysis-driven
protein transmembrane transporter activity" evidence=ISS]
HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557
PROSITE:PS00755 PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021
GO:GO:0005886 GO:GO:0006605 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0005622 GO:GO:0065002
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 OMA:FIMWLGE InterPro:IPR026593 GO:GO:0043952
KO:K03076 ProtClustDB:PRK09204 HOGENOM:HOG000080586
RefSeq:NP_842698.1 RefSeq:YP_016735.2 RefSeq:YP_026416.1
ProteinModelPortal:Q81VR0 IntAct:Q81VR0 DNASU:1086476
EnsemblBacteria:EBBACT00000012418 EnsemblBacteria:EBBACT00000015283
EnsemblBacteria:EBBACT00000022223 GeneID:1086476 GeneID:2818223
GeneID:2850579 KEGG:ban:BA_0130 KEGG:bar:GBAA_0130 KEGG:bat:BAS0130
BioCyc:BANT260799:GJAJ-141-MONOMER
BioCyc:BANT261594:GJ7F-143-MONOMER Uniprot:Q81VR0
Length = 433
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 103/420 (24%), Positives = 190/420 (45%)
Query: 26 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIP-QDYLSFVSGSVDELGDFGAELKLSF 84
+EIRR++ T ++++ RIG FIP+P + ++ QD L+ + G ++ G GA S
Sbjct: 12 AEIRRKILFTLAMLIVFRIGTFIPVPFTNGDVLKAQDQLNAL-GILNTFGG-GALKNFSI 69
Query: 85 FQLGISPQIVASILMQVL-CHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEA--VI 141
F +GI P I ASI++Q+L +VP + K+G G K+ + + ++ A ++ +
Sbjct: 70 FAMGIMPYITASIIVQLLQMDVVPKFSEWAKQGEMGRRKLTQFTRYFTIVLAFIQGFGMS 129
Query: 142 VACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILT 201
+ + + + A +L G + W+ + I+ G G G S++I GI
Sbjct: 130 IGFNGMVGGQLILNPGWSTYLYIATVLTAGTAFLMWLGEQITAKGVGNGISILIFGGIAA 189
Query: 202 GYTETL---YKMLSQLLGSSVRWW--PFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGF 256
+ Y+ Q +G + L LL V ++ + + + + RK+ +QY
Sbjct: 190 AIPSVISQVYQQQFQNIGDQLFMSIVKVALILLAVLAVI-VGVIFIQQAVRKIPIQYA-- 246
Query: 257 KLASAAREDSPITEVEPYIPFNINPSGMQPVL-TTTYLLAFPSILASILGSPFWQHVKEI 315
K + + ++P +N +G+ PV+ ++L+ P+I Q +
Sbjct: 247 KRVTGGNGGYAGAQ-NTHLPLKVNSAGVIPVIFAVSFLITPPTIAQFFPKHDVSQWIIAN 305
Query: 316 LNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEY 375
N VG +Y + F + + + N P+++++ LNK G +P ++PGK T +Y
Sbjct: 306 FNYSHPVGMI--IYVALIVAFTYFYAFVQV-N-PEQMSENLNKQGGYVPGIRPGKNTEQY 361
Query: 376 LTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQA 435
LTKI F G L + IG TS+LI+VG +E + ++
Sbjct: 362 LTKILYRLTFVGSIFLAAIAILPVIFTK-LGNLPPSAQIGGTSMLIVVGVALETMKQLES 420
>TIGR_CMR|APH_0299 [details] [associations]
symbol:APH_0299 "preprotein translocase, SecY subunit"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0005887 "integral
to plasma membrane" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] [GO:0015450 "P-P-bond-hydrolysis-driven protein
transmembrane transporter activity" evidence=ISS] HAMAP:MF_01465
InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00755
PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886
GO:GO:0006605 GO:GO:0005622 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0065002 eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 HOGENOM:HOG000080585
OMA:FIMWLGE InterPro:IPR026593 GO:GO:0043952 KO:K03076
ProtClustDB:PRK09204 RefSeq:YP_504911.1 ProteinModelPortal:Q2GL40
STRING:Q2GL40 GeneID:3930869 KEGG:aph:APH_0299 PATRIC:20949172
BioCyc:APHA212042:GHPM-329-MONOMER Uniprot:Q2GL40
Length = 434
Score = 316 (116.3 bits), Expect = 3.3e-28, P = 3.3e-28
Identities = 108/408 (26%), Positives = 185/408 (45%)
Query: 30 RRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF--GAELKLSFFQL 87
+R T +++ R+G +IP+PG + +I + +G + F GA +++ F L
Sbjct: 14 KRFGFTLFALIVYRLGTYIPIPGINLGVIGEIVSGHTTGVLGIFNVFSGGALGRMTIFAL 73
Query: 88 GISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVAC--- 144
+ P IV+SI++Q+L VP+L ++R+EG G KI SY ++++ F I++ +++
Sbjct: 74 NVMPYIVSSIMVQLLSVAVPALNEMRQEGELGRAKINSYTRYLTVVFCIVQGLMILLGLE 133
Query: 145 -YSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGY 203
+ + + +V ++ G M + W+ + I+ G G G SLII VGI++
Sbjct: 134 RMNTAEVMVVLDPGLTFRVVGISSMLAGTMFLLWLGERINLKGIGNGISLIIFVGIISEL 193
Query: 204 TETLYKMLSQLLGSSVRWWPFMLGL-LGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAA 262
+L + +LG F + L + F + + + RKV +QY ++
Sbjct: 194 PSSLSSVF--MLGKRGELSGFAVFLVMASFLALFLLIIFFERSYRKVLVQYPKRQVGGRF 251
Query: 263 -REDSPITEVEPYIPFNINPSGM-QPVLTTTYLLAFPSILASILGSPFWQHVKEILNPET 320
DS Y+P IN SG+ P+ LL+ ++ GS + V + E+
Sbjct: 252 YNSDSS------YMPLKINISGVIPPIFANALLLSLMTLAKFSAGSSWSDFVLRYFHTES 305
Query: 321 SVGARPWVYYTIYAFFVFLFN--IFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTK 378
+ VY + FF F + +FD KE A+ L K IP +PGK+T+EY +
Sbjct: 306 VLYIV--VYVALIMFFTFFYTSLVFD----SKETAEMLKKNSGFIPGKRPGKSTMEYFDQ 359
Query: 379 IQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSI 426
+ G HY F++G TS LIIV I
Sbjct: 360 VIRRLTVIGAVYLSVVCVVPEVVRHYCA---VSFTLGGTSFLIIVNVI 404
>TIGR_CMR|NSE_0285 [details] [associations]
symbol:NSE_0285 "preprotein translocase, SecY subunit"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0008565
"protein transporter activity" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_01465 InterPro:IPR002208
Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00755 PANTHER:PTHR10906
GO:GO:0016021 GO:GO:0005886 GO:GO:0006605 GO:GO:0005622
GO:GO:0065002 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 HOGENOM:HOG000080585
OMA:FIMWLGE InterPro:IPR026593 GO:GO:0043952 KO:K03076
RefSeq:YP_506176.1 ProteinModelPortal:Q2GEC0 STRING:Q2GEC0
GeneID:3932107 KEGG:nse:NSE_0285 PATRIC:22680663
ProtClustDB:CLSK2527980 BioCyc:NSEN222891:GHFU-312-MONOMER
Uniprot:Q2GEC0
Length = 436
Score = 251 (93.4 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 112/443 (25%), Positives = 192/443 (43%)
Query: 23 FFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDY-LSFVSGSVDELGDF--GAE 79
F ++ RL V +++ RIG FI LP + + + + + SG + F GA
Sbjct: 10 FSSKDLFHRLCFLLVALLVYRIGTFITLPSVNPAHVSEIFSANLSSGIIGMFNTFSGGAL 69
Query: 80 LKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEA 139
+++ F L + P IV+SI++Q+ ++ S ++ E ++ ++ Y ++L A +
Sbjct: 70 GRMTLFALNVMPYIVSSIVVQIFFSMLKSEGKVSAEFMN-ESRLSFYSKLVALFLAFFQG 128
Query: 140 -VIVACYSLPYSIYAASHSVKHVM-VTAFL-LVCGAMTMSWICDTISESGFGQGSSLIIC 196
+IVA + + ++ T+ L LVCG ++ W+ I+ G G G SLII
Sbjct: 129 FIIVAGLERTKAFVGGNEEFYSLLKYTSVLTLVCGTFSLIWLGQQINSRGIGNGMSLIIF 188
Query: 197 VGILTGYTETLYKMLSQL--LGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYY 254
GI+ + S + GS + L LL VF + + V+V + + + Y
Sbjct: 189 AGIVAEMPAIFGNLFSGIGSPGSGILGIFVSLSLL-VFVVFLV--VLVERASKNIPVHYP 245
Query: 255 GFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKE 314
+ + D+ IP IN SG+ P + L+ FP LA+ H+ E
Sbjct: 246 RRRTWGSTHGDAASN-----IPVKINVSGVIPPIFANALILFPLTLANFSAE---SHLGE 297
Query: 315 ILNPETSVGARPWVYYTIYA----FFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGK 370
+ SVG +P +Y+ +++ FF F ++ F + N EI+D L K A + +PG
Sbjct: 298 FIIRYFSVG-QP-LYFLLHSCLLVFFCFFYSDF-VFNTT-EISDSLKKGEAIVAGRRPGI 353
Query: 371 ATIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFS--IGFTSVLIIVGSIIE 428
+T +L + G +Y GF I TS+LIIV I +
Sbjct: 354 STKRHLDYVLRRITVVGAAYLVCICVVPEIFRNYF-----GFDAIISGTSLLIIVNVITD 408
Query: 429 LRRSYQAYNVMPSLSKALRRYGV 451
L Q S L++ G+
Sbjct: 409 LLSQIQVLLFSSHYSSFLKKGGM 431
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.326 0.141 0.432 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 451 438 0.00088 118 3 11 22 0.45 33
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 616 (65 KB)
Total size of DFA: 260 KB (2138 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 35.67u 0.11s 35.78t Elapsed: 00:00:02
Total cpu time: 35.67u 0.11s 35.78t Elapsed: 00:00:02
Start: Mon May 20 19:17:27 2013 End: Mon May 20 19:17:29 2013