Query 013035
Match_columns 451
No_of_seqs 119 out of 1070
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 23:45:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0201 SecY Preprotein transl 100.0 1.8E-95 4E-100 749.0 41.4 416 13-449 3-434 (436)
2 PRK12907 secY preprotein trans 100.0 9.2E-94 2E-98 741.9 43.7 412 23-450 9-434 (434)
3 PRK09204 secY preprotein trans 100.0 2.2E-93 4.7E-98 740.8 42.2 411 20-446 6-426 (426)
4 CHL00161 secY preprotein trans 100.0 3.3E-90 7.2E-95 715.8 41.6 404 21-446 3-416 (417)
5 PRK08568 preprotein translocas 100.0 2E-88 4.2E-93 709.1 41.3 412 5-450 2-461 (462)
6 PRK12417 secY preprotein trans 100.0 4.3E-88 9.3E-93 695.3 40.0 389 20-448 4-404 (404)
7 TIGR00967 3a0501s007 preprotei 100.0 2.3E-87 5E-92 693.7 37.7 398 29-442 1-410 (410)
8 TIGR02920 acc_sec_Y2 accessory 100.0 1E-82 2.2E-87 655.2 38.6 388 27-446 1-395 (395)
9 PTZ00219 Sec61 alpha subunit; 100.0 7.8E-83 1.7E-87 667.5 36.2 402 4-439 5-469 (474)
10 PF00344 SecY: SecY translocas 100.0 5.1E-73 1.1E-77 576.4 30.5 331 83-431 1-346 (346)
11 KOG1373 Transport protein Sec6 100.0 4.6E-61 9.9E-66 470.5 26.8 407 1-441 1-469 (476)
12 PF10559 Plug_translocon: Plug 95.2 0.0077 1.7E-07 40.8 0.8 34 40-81 1-34 (35)
13 PF04923 Ninjurin: Ninjurin ; 62.5 23 0.0005 30.0 5.8 44 91-134 46-90 (104)
14 PF07330 DUF1467: Protein of u 38.5 41 0.00088 27.5 3.4 39 359-397 32-70 (85)
15 PF08006 DUF1700: Protein of u 35.5 1.4E+02 0.003 27.4 7.1 33 347-380 51-83 (181)
16 PRK10582 cytochrome o ubiquino 33.2 1.7E+02 0.0037 25.0 6.6 50 128-177 47-100 (109)
17 TIGR02847 CyoD cytochrome o ub 31.5 2.1E+02 0.0045 23.9 6.7 49 129-177 37-89 (96)
18 PF12263 DUF3611: Protein of u 31.0 4.5E+02 0.0097 24.6 10.2 57 326-387 57-114 (183)
19 PF05697 Trigger_N: Bacterial 30.9 94 0.002 27.4 4.9 30 360-390 38-67 (145)
20 PF10066 DUF2304: Uncharacteri 29.8 2.9E+02 0.0062 23.5 7.6 55 386-443 38-92 (115)
21 TIGR02876 spore_yqfD sporulati 29.5 50 0.0011 34.5 3.3 59 328-387 89-159 (382)
22 TIGR02901 QoxD cytochrome aa3 28.7 2.5E+02 0.0054 23.4 6.6 48 130-177 40-91 (94)
23 PRK01490 tig trigger factor; P 26.2 58 0.0012 34.3 3.1 32 350-382 29-60 (435)
24 COG3125 CyoD Heme/copper-type 25.1 3.3E+02 0.0071 23.5 6.8 56 129-184 50-109 (111)
25 TIGR01524 ATPase-IIIB_Mg magne 23.0 3.9E+02 0.0085 31.1 9.3 89 347-446 34-123 (867)
26 TIGR01523 ATPase-IID_K-Na pota 20.8 3.7E+02 0.0081 32.0 8.7 89 347-446 27-116 (1053)
27 PRK10517 magnesium-transportin 20.3 4.3E+02 0.0093 30.9 8.9 88 348-446 69-157 (902)
No 1
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.8e-95 Score=748.96 Aligned_cols=416 Identities=29% Similarity=0.457 Sum_probs=347.2
Q ss_pred HHhhhhhhccc-cchhhHHHHHHHHHHHHHHHhCccccCCCccCCcchhhhhhhccCccchhhcc--cccccchhhhcCc
Q 013035 13 SSVLNNAAESF-FKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF--GAELKLSFFQLGI 89 (451)
Q Consensus 13 ~~~~p~~~~~~-~~~~l~~kil~Tl~il~iy~lG~~IPlPGi~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~slfsLGI 89 (451)
.+.+|++.++. +.++++||++||++++++||+|++||+||+|.++.++.+.+..... .++.+ ||++++|+|+|||
T Consensus 3 ~~~~~~~~~~~~~~~~l~kr~~fT~~~Livyrigs~IPvpGi~~~~~~~~~~~~~~~~--~~n~~~GGal~~~SIfaLGI 80 (436)
T COG0201 3 LPLLPEVLSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLI--LFNMFSGGALSRGSIFALGI 80 (436)
T ss_pred chhhHHHhcchhccHHHHHHHHHHHHHHHHHHHhCcCcCCCCCHHHHHHHHHHhhhhH--HHHHhcccccccchHHHHcc
Confidence 35678888987 5799999999999999999999999999999997654332211111 12223 4679999999999
Q ss_pred hhHHhHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccccccchhHHHHHHHH
Q 013035 90 SPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYS--IYAASHSVKHVMVTAFL 167 (451)
Q Consensus 90 ~PyItAsIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~~~~--~~~~~~~~~~~~~ivl~ 167 (451)
+|||||||+||||+...|.++|++||+|+||||+|++|||+|+++|++||++++......+ ....+.+...+++++++
T Consensus 81 ~PyITASII~QLL~~~~p~l~~l~k~~e~gR~k~~~~tRyltlvla~iQa~~~~~~~~~~~~~~~~~~~~~~~~~l~il~ 160 (436)
T COG0201 81 MPYITASIIMQLLTVGSPILKKLDKEGEEGRRKIQQYTRYLTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQ 160 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHH
Confidence 9999999999999988999999999999999999999999999999999999975332111 11112335678899999
Q ss_pred HHHHHHHHHHHhhhhhccCCCcchHHHHHHHHhhHHHHHHHHHHHHhhcCC--cchHHHHHHHHHHHHHHHHHHHHhhcc
Q 013035 168 LVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSS--VRWWPFMLGLLGVFTIVTMWAVVVTEG 245 (451)
Q Consensus 168 LvaG~~il~wL~e~it~~GiGnG~SliI~~~I~~~lp~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~iv~~~~~ 245 (451)
|++||+++|||||+|||||+|||+|++|++||++++|+.+.+.......+. .++.. .+..++..+++++.++|+|++
T Consensus 161 L~~Gt~~lmwLgE~Itk~GIGnGiSLiIfagI~~~lp~~~~~~~~~~~~~~~~~~~l~-~l~~~~~~l~ii~~vvyve~~ 239 (436)
T COG0201 161 LTAGTMFLMWLGEQITKRGIGNGISLIIFAGIVASLPSAIFGIIGALPTGALFLSILF-LLLLVLLTLAIIFLVVYVEQA 239 (436)
T ss_pred HHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHHHHHHHhhhe
Confidence 999999999999999999999999999999999999999988665444321 11111 122333444556678999999
Q ss_pred eEEeeEeeccccccccccCCCCCCCCCCccccccccCCcchHHHHHHHHHhHHHHHHHhCCc-------hHHHHHHHcCC
Q 013035 246 CRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSP-------FWQHVKEILNP 318 (451)
Q Consensus 246 ~rrIPi~~~~~~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiifassll~~p~~i~~~l~~~-------~~~~~~~~l~~ 318 (451)
+||||+||+|++ ..+++++|+|+|+||||+||+||||+++++|.+++++++++ |...+.+++++
T Consensus 240 ~r~IPI~y~~~~---------~~~g~~s~lPlKln~agvIPvIfassll~~p~~i~~~l~~~~~~~~~~~~~~i~~~l~~ 310 (436)
T COG0201 240 RRRIPIQYAKRQ---------SYRGQSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNGGLAYYLSPLTSISDALSP 310 (436)
T ss_pred EEEeehhhhhhh---------hcCCcCceeeeEeeccCChHHHHHHHHHHHHHHHHHHhcCCCccccccchhhHHHhccC
Confidence 999999999854 23568899999999999999999999999999999998622 34455666665
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHHHHHHHHHHH
Q 013035 319 ETSVGARPWVYYTIYAFFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILAT 396 (451)
Q Consensus 319 ~~~~~~~~~i~~~iy~~~i~~Fs~f~--~~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i~~~t~~Ga~~l~~la~ 396 (451)
. .|+|..+|++++++||||| ++.||||+||||||+|.+|||+||||+|+|||+|+++|+|++||+|++++|+
T Consensus 311 ~------~~~y~~~y~~lii~Fs~Fy~~i~~np~~~A~~lkksG~~IPGiRpg~~te~yL~rvi~rlt~~Ga~~l~~iai 384 (436)
T COG0201 311 G------SPVYIALYVVLIIFFSYFYTEIQFNPEEIAENLKKSGGFIPGIRPGKDTEKYLNRVIPRLTFIGALFLGLIAI 384 (436)
T ss_pred C------cHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4899999999999999999 4578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCccccccchhHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 013035 397 SSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRY 449 (451)
Q Consensus 397 ~p~~~~~~~~~~~~~~~~~gtsllI~V~v~~~~~~qi~~~~~~~~y~~~~~~~ 449 (451)
+|++++...+ .++.+||||+||+||+++|++||+++++.+++|+++.+..
T Consensus 385 lp~l~~~~~~---~~~~~gGTslLI~V~V~l~~~~qi~~~l~~~~Y~~~~~~~ 434 (436)
T COG0201 385 LPELLGTAGG---VPFYFGGTSLLIVVGVALDTYEQIEAELLMEKYPGLRRIK 434 (436)
T ss_pred HHHHHHHhcC---CcccccCeeeeeehHHHHHHHHHHHHHHHHhhchhHHhhc
Confidence 9999997632 3478899999999999999999999999999999985543
No 2
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=9.2e-94 Score=741.89 Aligned_cols=412 Identities=23% Similarity=0.397 Sum_probs=329.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHhCccccCCCccCCcchhhhhhhccCccchhhc-c--cccccchhhhcCchhHHhHHHHH
Q 013035 23 FFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGD-F--GAELKLSFFQLGISPQIVASILM 99 (451)
Q Consensus 23 ~~~~~l~~kil~Tl~il~iy~lG~~IPlPGi~~~~~~~~~~~~~~~~~~~l~~-~--~~~~~~slfsLGI~PyItAsIi~ 99 (451)
++++|+|||++||++++++||+|++||+||+|.++.+.. +. +.+..+.+ + |+++++|+|+|||+|||||||+|
T Consensus 9 ~~~~~lr~ril~Tl~il~iyrlG~~IPiPGi~~~~~~~~--~~--~~~~~~~~~fsGG~~~~~sifsLGI~PyItAsII~ 84 (434)
T PRK12907 9 MRVAEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKVQ--DQ--ANVLGMLNVFGGGALQHFSIFAVGITPYITASIIV 84 (434)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHhhh--hh--hhHHHHHHHHhccccccChHHHHccHHHHHHHHHH
Confidence 446899999999999999999999999999998765311 11 12222222 3 46789999999999999999999
Q ss_pred HHHHh-HhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c-cccccchhHHHHHHHHHHHHHHHHH
Q 013035 100 QVLCH-IVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYS-I-YAASHSVKHVMVTAFLLVCGAMTMS 176 (451)
Q Consensus 100 Qll~~-~~p~l~~l~~~g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~~~~-~-~~~~~~~~~~~~ivl~LvaG~~il~ 176 (451)
||++. .+|++++++||||+||||+|++|||+|+++|++||++++....... . ...+.+....+.++++|+||+++++
T Consensus 85 QLL~~~~~p~l~~l~kege~gr~k~~~~tR~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~aGt~~l~ 164 (434)
T PRK12907 85 QLLQMDVIPKFSEWAKQGEMGRKKSAQFTRYFTIILAFIQAIGMSYGFNNIAGGQLITDQSWTTYLFIATVLTAGTAFLL 164 (434)
T ss_pred HHHHhccCccHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccCccHHHHHHHHHHHHHHHHHHH
Confidence 99965 6999999999999999999999999999999999999864221110 0 0111233346677899999999999
Q ss_pred HHhhhhhccCCCcchHHHHHHHHhhHHHHHHHHHHH-Hhhc-CCcchHH-H-HHHHHHHHHHHHHHHHHhhcceEEeeEe
Q 013035 177 WICDTISESGFGQGSSLIICVGILTGYTETLYKMLS-QLLG-SSVRWWP-F-MLGLLGVFTIVTMWAVVVTEGCRKVKLQ 252 (451)
Q Consensus 177 wL~e~it~~GiGnG~SliI~~~I~~~lp~~~~~~~~-~~~~-~~~~~~~-~-~~~~~~i~~~~~~~iv~~~~~~rrIPi~ 252 (451)
||||+|||||+|||+|++|++||++++|+++.+.+. .... +...+.. . ...+++++++++++++++|++|||||+|
T Consensus 165 WL~e~It~~GIGnGiSliI~~gIv~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~v~~~~rrIPi~ 244 (434)
T PRK12907 165 WLGEQITANGVGNGISMLIFAGLVAAIPNVANQIYLQQFQNAGDQLFMHIIKMLLIGLVILAIVVGVIYIQQAVRKIPIQ 244 (434)
T ss_pred HHHHHHhcCCcCcccHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhHHHHHHHHHHHHHHHHHHhheeeeeEEEEEE
Confidence 999999999999999999999999999988765432 1111 1100111 1 1222333344566789999999999999
Q ss_pred eccccccccccCCCCCCC-CCCccccccccCCcchHHHHHHHHHhHHHHHHHhCCc-hHHHHHHHcCCCCCCCCcchHHH
Q 013035 253 YYGFKLASAAREDSPITE-VEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSP-FWQHVKEILNPETSVGARPWVYY 330 (451)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~-~~~ylPiKln~aGvmPiifassll~~p~~i~~~l~~~-~~~~~~~~l~~~~~~~~~~~i~~ 330 (451)
|+|+.. ++ +.+++ +++|+|+|+|+|||||+||||+++++|+++++++.++ +...+..++++. .++|.
T Consensus 245 ya~r~~--~~---~~~~~~~~syiPlKvN~aGvmPiIFAssll~~p~~i~~~~~~~~~~~~~~~~~~~~------~~~~~ 313 (434)
T PRK12907 245 YAKAVS--GN---NQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPDSSVSKWLVANLDFA------HPIGM 313 (434)
T ss_pred Echhhc--cc---cccCCCcCceeeeeEcccCChHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHcCCC------CcHHH
Confidence 996431 11 22334 5689999999999999999999999999999987432 233344455553 35688
Q ss_pred HHHHHHHHHHHHHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHhhcc
Q 013035 331 TIYAFFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRI 408 (451)
Q Consensus 331 ~iy~~~i~~Fs~f~--~~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~~~~~~~~~~ 408 (451)
++|++++++||||| +..||||+||||||+|++|||+||||+|+|||+|+++|+|++||++++++|++|++++...+ +
T Consensus 314 ~~y~~lii~Fs~fyt~i~~nP~~iAenL~k~G~~IPGiRPGk~T~~yL~~~i~rlt~~Gai~L~~ia~lP~i~~~~~~-~ 392 (434)
T PRK12907 314 TLYVGLIVAFTYFYAFIQVNPEQMAENLKKQNGYVPGIRPGKSTEQYVTKILYRLTFIGAIFLGAISILPLVFTKIAT-L 392 (434)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhC-C
Confidence 89999999999996 56899999999999999999999999999999999999999999999999999999987643 2
Q ss_pred CCccccccchhHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhC
Q 013035 409 NEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYG 450 (451)
Q Consensus 409 ~~~~~~~gtsllI~V~v~~~~~~qi~~~~~~~~y~~~~~~~~ 450 (451)
+..+.+||||+||+||+++|++||+|+++.++||+++++|+.
T Consensus 393 ~~~~~~gGTslLI~VgV~ldt~~qi~s~l~~~~Y~~~~~~~~ 434 (434)
T PRK12907 393 PPSAQIGGTSLLIIVGVALETMKTLESQLVKRHYKGFIKKAN 434 (434)
T ss_pred CcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 222458999999999999999999999999999999999874
No 3
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=2.2e-93 Score=740.83 Aligned_cols=411 Identities=30% Similarity=0.519 Sum_probs=340.2
Q ss_pred hccccchhhHHHHHHHHHHHHHHHhCccccCCCccCCcchhhhhhhccCccchhhc-c--cccccchhhhcCchhHHhHH
Q 013035 20 AESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGD-F--GAELKLSFFQLGISPQIVAS 96 (451)
Q Consensus 20 ~~~~~~~~l~~kil~Tl~il~iy~lG~~IPlPGi~~~~~~~~~~~~~~~~~~~l~~-~--~~~~~~slfsLGI~PyItAs 96 (451)
.+.++++|+|+|++||++++++||+|++||+||+|.++.++.+ +..++++.++.+ + ||++++|+|+|||+||||||
T Consensus 6 ~~~~~~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~~~~~~-~~~~~~~~~~~~~~~Gga~~~~slf~LGI~PyItAs 84 (426)
T PRK09204 6 KNAFKIKELRKRILFTLGALIVFRIGSYIPVPGIDPAALAQLF-DQQSGGILGLFNLFSGGALSRFSIFALGIMPYITAS 84 (426)
T ss_pred HhHhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHH-hhccccHHHHHHHHcccchhcccHHHhCcHHHHHHH
Confidence 4456689999999999999999999999999999998764422 221235555544 3 46799999999999999999
Q ss_pred HHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----ccccccchhHHHHHHHHHHHHH
Q 013035 97 ILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYS----IYAASHSVKHVMVTAFLLVCGA 172 (451)
Q Consensus 97 Ii~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~~~~----~~~~~~~~~~~~~ivl~LvaG~ 172 (451)
|+||+++.++|+++|+|||||+||||+|++|||+|+++|++||++++.....+. ....+++....+.++++|++|+
T Consensus 85 Ii~QLL~~~ip~l~~l~kege~gr~k~~~~tr~ltl~~a~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~L~~Gs 164 (426)
T PRK09204 85 IIMQLLTVVIPKLEELKKEGEAGRRKINQYTRYLTVVLAFVQSIGIAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTAGT 164 (426)
T ss_pred HHHHHHHHHhhhHHHHhhccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999864222121 1111123446778899999999
Q ss_pred HHHHHHhhhhhccCCCcchHHHHHHHHhhHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhhcceEEeeEe
Q 013035 173 MTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQ 252 (451)
Q Consensus 173 ~il~wL~e~it~~GiGnG~SliI~~~I~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iv~~~~~~rrIPi~ 252 (451)
++++||||+|||||+|||+|++|++||++++|+++.+.++...++..++. ..+..+.+++++++.++++|++|||||+|
T Consensus 165 ~i~~wL~e~It~~GiGnGiSliI~~gI~~~ip~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~rIPi~ 243 (426)
T PRK09204 165 MFLMWLGEQITERGIGNGISLIIFAGIVAGLPSAIGQTFELARTGSLSIL-VFLLLIVLFLAVIAFVVFVEQAQRRIPVQ 243 (426)
T ss_pred HHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHHHHHHHHheeeeeEEEEEEE
Confidence 99999999999999999999999999999999999876643332211222 12223334445566789999999999999
Q ss_pred eccccccccccCCCCCCCCCCccccccccCCcchHHHHHHHHHhHHHHHHHhCCc-hHHHHHHHcCCCCCCCCcchHHHH
Q 013035 253 YYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSP-FWQHVKEILNPETSVGARPWVYYT 331 (451)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiifassll~~p~~i~~~l~~~-~~~~~~~~l~~~~~~~~~~~i~~~ 331 (451)
|+++.. ++ +.++++++|+|+|+||+|+||+|||++++++|++++++..++ |.+.+.++++|. .|+|.+
T Consensus 244 ~~~~~~--~~---~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~ 312 (426)
T PRK09204 244 YAKRQV--GR---KMYGGQSSYLPLKVNMAGVIPVIFASSILLFPATIAQFFGSGSWLQWIANYLSPG------SPLYIL 312 (426)
T ss_pred ehhhhc--cc---cccCCCCeeeeeeecccCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhCCC------ChHHHH
Confidence 997521 11 233457899999999999999999999999999999984333 556677777764 478999
Q ss_pred HHHHHHHHHHHHHh--ccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHhhccC
Q 013035 332 IYAFFVFLFNIFDI--ANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRIN 409 (451)
Q Consensus 332 iy~~~i~~Fs~f~~--~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~~~~~~~~~~~ 409 (451)
+|++++++||+||. +.||||+||||||||++|||+|||++|+|||+|+++|+|++||++++++|++|++++... +
T Consensus 313 ~y~~lii~Fs~fy~~i~~~p~~iAe~l~k~g~~IpGiRpG~~T~~yL~~~i~r~t~~Ga~~l~~ia~~p~~~~~~~-~-- 389 (426)
T PRK09204 313 LYALLIIFFTFFYTAIQFNPEEIAENLKKSGGFIPGIRPGEQTAEYLDKVLTRLTLVGAIYLAFIALLPEILQNAL-G-- 389 (426)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHc-C--
Confidence 99999999999994 579999999999999999999999999999999999999999999999999999998763 2
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 013035 410 EGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKAL 446 (451)
Q Consensus 410 ~~~~~~gtsllI~V~v~~~~~~qi~~~~~~~~y~~~~ 446 (451)
.++.++|||++|+||+++|++||+|+++.++||++++
T Consensus 390 ~~~~~ggTslLI~Vgv~l~~~~qi~~~~~~~~Y~~~~ 426 (426)
T PRK09204 390 VPFYFGGTSLLIVVGVALDTMKQIESQLMSRQYEGFL 426 (426)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 2467899999999999999999999999999999863
No 4
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=100.00 E-value=3.3e-90 Score=715.81 Aligned_cols=404 Identities=30% Similarity=0.523 Sum_probs=331.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhCccccCCCccCCcchhhhhhhccCccchhhc-c--cccccchhhhcCchhHHhHHH
Q 013035 21 ESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGD-F--GAELKLSFFQLGISPQIVASI 97 (451)
Q Consensus 21 ~~~~~~~l~~kil~Tl~il~iy~lG~~IPlPGi~~~~~~~~~~~~~~~~~~~l~~-~--~~~~~~slfsLGI~PyItAsI 97 (451)
+.++++++++|++||++++++||+|++||+||+|.+..++.. + .+++.++.+ + ++.+++|+|+|||+|||||||
T Consensus 3 ~~~~~~~l~~ri~~Tl~~L~iy~lg~~IPlpGv~~~~~~~~~-~--~~~~~~~~~~~sgg~~~~~slf~LGI~PyItAsI 79 (417)
T CHL00161 3 QSKKKDELLNRLLFTLGLLLLIRLGTFIPVPGIDHTQLYPSL-S--NNPLLNLLNTFSGGGFFVIGLFALGILPYINASI 79 (417)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHhccCCCCCcCHHHHHHhh-c--cccHHHHHHHHcCCCcccCcHHHHCcHHHHHHHH
Confidence 456789999999999999999999999999999998653311 1 134555544 3 457899999999999999999
Q ss_pred HHHHHHhHhhhHHHhhhc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHH
Q 013035 98 LMQVLCHIVPSLVQLRKE-GLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMS 176 (451)
Q Consensus 98 i~Qll~~~~p~l~~l~~~-g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~~~~~~~~~~~~~~~~~ivl~LvaG~~il~ 176 (451)
+||+++..+|++++++|| ||+||||+|++|||+|+++|++||++++... ..... +++....++++++|++|+++++
T Consensus 80 I~QLl~~~~p~l~~l~k~~g~~gr~k~~~~tr~ltl~la~iqa~~~~~~~-~~~~~--~~~~~~~~~~v~~L~~Gt~~~~ 156 (417)
T CHL00161 80 IIQLLTSIIPSLEKLQKEEGEAGRRKINQYTRYLTLGWAIIQSIGISFWL-KPYLF--NWNLLLALEIVLALTSGSMIVL 156 (417)
T ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcc--CcchHHHHHHHHHHHHHHHHHH
Confidence 999999889999999997 9999999999999999999999999986432 21111 1233467789999999999999
Q ss_pred HHhhhhhccCCCcchHHHHHHHHhhHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhhcceEEeeEeeccc
Q 013035 177 WICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGF 256 (451)
Q Consensus 177 wL~e~it~~GiGnG~SliI~~~I~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iv~~~~~~rrIPi~~~~~ 256 (451)
||||+|||||+|||+|++|++||++++|+.+.+.+....+ ..... ..+.+.+++++++..+++++++|||||+||+|+
T Consensus 157 wL~e~it~~GiGnGiSliI~~~I~~~~p~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~vi~~vv~~~~~~rrIPi~~~~~ 234 (417)
T CHL00161 157 WLSELITEKGLGNGSSLLIFFNIVSNLPKLLQSLLFSLSA-NITIL-SILLLLFLFFITLIGIIFLQEAIRKIPLISAKQ 234 (417)
T ss_pred HHHHHHHhcCcCcchHHHHHHHHHHHHHHHHHHHHHHhcc-chhHH-HHHHHHHHHHHHHHHHHHhhcceEEEEEEEhhh
Confidence 9999999999999999999999999999988765533222 11111 112223334455667899999999999999975
Q ss_pred cccccccCCCCCCCCCCccccccccCCcchHHHHHHHHHhHHHHHHHhCCchHHH---HHHHcCCCCCCCCcchHHHHHH
Q 013035 257 KLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQH---VKEILNPETSVGARPWVYYTIY 333 (451)
Q Consensus 257 ~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiifassll~~p~~i~~~l~~~~~~~---~~~~l~~~~~~~~~~~i~~~iy 333 (451)
+. ++..+++++|+|+|+||+|+||+|||++++++|+++++++.+.++.. ...++++. .++|.++|
T Consensus 235 ~~------~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~------~~~y~~~y 302 (417)
T CHL00161 235 LG------KSSRLASNSYLPLRLNQAGVMPIIFASALLVLPGYLTNILLNQFLLPLLSLFLQLASF------KILYLVLY 302 (417)
T ss_pred hc------cccccCccceeeeehhccCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHhcCCcc------cHHHHHHH
Confidence 42 12234567999999999999999999999999999999886543332 22223322 47789999
Q ss_pred HHHHHHHHHHHh--ccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHhhccCCc
Q 013035 334 AFFVFLFNIFDI--ANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEG 411 (451)
Q Consensus 334 ~~~i~~Fs~f~~--~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~~~~~~~~~~~~~ 411 (451)
++++++||+||. +.||||+||||||+|++|||+||||+|+|||+|+++|+|++||++++++|++|++++.+++ . ..
T Consensus 303 ~~lii~Fs~f~~~i~~~p~~iA~~Lkk~g~~IpGvRpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~l~~~~~~-~-~~ 380 (417)
T CHL00161 303 FVLILFFSYFYSTIVLNPKDISENLQKMAVSIPGIRPGKATTKYLKKTLNRLTLLGALFLAFIALLPNLIESVLN-L-SV 380 (417)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-c-cc
Confidence 999999999994 5789999999999999999999999999999999999999999999999999999987643 2 22
Q ss_pred cc-cccchhHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 013035 412 FS-IGFTSVLIIVGSIIELRRSYQAYNVMPSLSKAL 446 (451)
Q Consensus 412 ~~-~~gtsllI~V~v~~~~~~qi~~~~~~~~y~~~~ 446 (451)
+. +||||++|+||+++|++||+|+++.++||+++.
T Consensus 381 ~~~~ggtslLI~Vgv~~~~~~qi~a~~~~~~Y~~~~ 416 (417)
T CHL00161 381 FKGLGTTSLLILVGVAIDTSRQIQTYLISNNYENMY 416 (417)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHHHhhcccc
Confidence 44 699999999999999999999999999999875
No 5
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=2e-88 Score=709.06 Aligned_cols=412 Identities=19% Similarity=0.217 Sum_probs=336.1
Q ss_pred chhhhhhh-HHhhhhhhccccchhhHHHHHHHHHHHHHHHhCccccCCCccCCcchhhhhhhccCccchhhcccccccch
Q 013035 5 RFLNFIRL-SSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLS 83 (451)
Q Consensus 5 ~~~~~~~~-~~~~p~~~~~~~~~~l~~kil~Tl~il~iy~lG~~IPlPGi~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s 83 (451)
+++|+.|+ ++.+||+++|++++++|+|++||++++++||+|++||+||+|.++ . +.+.+++.++|.+++|
T Consensus 2 ~~~~~~~~~~~~~P~v~~p~~~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~-~--------~~l~~l~~~~gg~~~s 72 (462)
T PRK08568 2 GFLDKLEPILERLPAVKRPKGHVPFKEKLKWTAIVLILYFILTNIPLYGISQSS-Q--------DLFELLRIIFAGSFGT 72 (462)
T ss_pred CHHHHHHHHHHhCCCccCCCcCccHHHHHHHHHHHHHHHHHHccCcCCCcCccc-c--------cHHHHHHHHhCCcccc
Confidence 47899885 999999999999999999999999999999999999999999875 1 1344445555556999
Q ss_pred hhhcCchhHHhHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-cccchhHHH
Q 013035 84 FFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYA-ASHSVKHVM 162 (451)
Q Consensus 84 lfsLGI~PyItAsIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~~~~~~~-~~~~~~~~~ 162 (451)
+|+|||+|||||||+||+++.. ++.++++++|+||||+|++||++|+++|++||.+++... .+.... ...+....+
T Consensus 73 lf~LGI~PyItAsII~QLL~~~--~l~~l~~~~~~gr~k~~~~tr~lti~~a~iqs~~~~~~~-~~~~~~~~~~~~~~~~ 149 (462)
T PRK08568 73 LLQLGIGPIVTAGIILQLLVGS--KLINLDLSDPEDRALFQGLQKLLAIVMIALEAAPFVLAG-AFGPATGLASTPLLAL 149 (462)
T ss_pred hHHhCcHHHHHHHHHHHHHhhC--chheeccCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccCcccccccHHHHH
Confidence 9999999999999999999765 444666667999999999999999999999999996532 221110 012344677
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHhhHHHHHHHHHHH---------------HhhcCCc--chH---
Q 013035 163 VTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLS---------------QLLGSSV--RWW--- 222 (451)
Q Consensus 163 ~ivl~LvaG~~il~wL~e~it~~GiGnG~SliI~~~I~~~lp~~~~~~~~---------------~~~~~~~--~~~--- 222 (451)
.++++|++|+++++||||+|||||+|||+|++|++||++++|+++.+... ...++.. ...
T Consensus 150 ~i~l~L~~Gt~i~~wL~E~Itk~GiGnGiSliI~~gI~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~ 229 (462)
T PRK08568 150 LIFLQLFLGGILIILLDELVSKWGIGSGISLFILAGVSQTIFVGLFNWLTGGQGLPVGFIPALFSAITSGNLTLALLLTT 229 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHHHHHHHHHHhhhhcccCccccchHHHHHHHHhcCccchhhhhcc
Confidence 88999999999999999999999999999999999999999999876541 1111110 011
Q ss_pred --HHHHHHHHHHHHHHHHHHHhhcceEEeeEeeccccccccccCCCCCCCCCCccccccccCCcchHHHHHHHHHhHHHH
Q 013035 223 --PFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSIL 300 (451)
Q Consensus 223 --~~~~~~~~i~~~~~~~iv~~~~~~rrIPi~~~~~~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiifassll~~p~~i 300 (451)
+. +..+..+++++..++++|+++||||+||+|. +++++|+|+|+||+|+||+||||+++++|+++
T Consensus 230 ~l~~-l~~~~~~~~i~~~~v~~q~~~~~IPI~~~k~------------~g~~s~iPiKln~aGvmPiIFassll~~p~~i 296 (462)
T PRK08568 230 RGLL-LLGLITTIVIFLIVVYLESMRVEIPLSHGRV------------RGARGRYPLKFIYVSVLPVILVRALQANIQLF 296 (462)
T ss_pred cccH-HHHHHHHHHHHHHheeEEeeEEEEEEEeccc------------cCCCceeeEEecccCcHHHHHHHHHHHHHHHH
Confidence 11 2223334445666899999999999999862 23569999999999999999999999999999
Q ss_pred HHHhCCc---h-----------HHHHHHHcCCCCCCCC--cch----HHHHHHHHHHHHHHHHHh--c-cChHHHHHHHH
Q 013035 301 ASILGSP---F-----------WQHVKEILNPETSVGA--RPW----VYYTIYAFFVFLFNIFDI--A-NLPKEIADYLN 357 (451)
Q Consensus 301 ~~~l~~~---~-----------~~~~~~~l~~~~~~~~--~~~----i~~~iy~~~i~~Fs~f~~--~-~~p~~iAe~Lk 357 (451)
++++.+. + .+++.++++|+.++.. .++ +|.++|++++++||+||. + .||||+|||||
T Consensus 297 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~p~~~vvY~~~~~~l~i~Fs~fy~~i~g~~p~diAe~Lk 376 (462)
T PRK08568 297 GQLLQRLGIPILGTYDSSGASPISGLAYYLSPPHSPYDWIQDPLRAIIYALFMIVLSILFAIFWVETTGLDPKTQARQLQ 376 (462)
T ss_pred HHHHhhcCchhhhhcccccccchhHHHHHhCCCcchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9886321 2 1456677877654311 123 478889999999999994 5 68999999999
Q ss_pred HcCCccccccCChh-hHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHhhccCCccccccchhHHHHHHHHHHHHHHHHH
Q 013035 358 KMGARIPNVKPGKA-TIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAY 436 (451)
Q Consensus 358 k~g~~IpGirpG~~-T~~yL~~~i~~~t~~Ga~~l~~la~~p~~~~~~~~~~~~~~~~~gtsllI~V~v~~~~~~qi~~~ 436 (451)
|||++|||+||||+ |+|||+|+++|+|++||++++++|++|++++.. + +|||++|+||+++|++||++++
T Consensus 377 k~g~~IpGiRpG~~~t~~yL~~~i~r~t~~Ga~~l~~ia~lp~~~~~~----g-----~gtslLI~Vgv~~~~~~qi~~~ 447 (462)
T PRK08568 377 NSGMQIPGFRRNPKVIEKVLERYIPPVTVIGGAIVGLLAVLADLLGAL----G-----GGTGLLLTVSIVYQLYEEIARE 447 (462)
T ss_pred HcCCcccCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C-----CchhhhhhHHHHHHHHHHHHHH
Confidence 99999999999997 999999999999999999999999999999754 2 7999999999999999999999
Q ss_pred HhhHHHHHHHhhhC
Q 013035 437 NVMPSLSKALRRYG 450 (451)
Q Consensus 437 ~~~~~y~~~~~~~~ 450 (451)
+.+++|+++=+--|
T Consensus 448 ~~~~~Y~~~~~~~~ 461 (462)
T PRK08568 448 QLMEMYPLLRRFLG 461 (462)
T ss_pred HHHHHhHHHHHHhc
Confidence 99999997755443
No 6
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=4.3e-88 Score=695.26 Aligned_cols=389 Identities=20% Similarity=0.287 Sum_probs=316.3
Q ss_pred hccccchhhHHHHHHHHHHHHHHHhCccccCCCccCCcchhhhhhhccCccchhhc-c--cccccchhhhcCchhHHhHH
Q 013035 20 AESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGD-F--GAELKLSFFQLGISPQIVAS 96 (451)
Q Consensus 20 ~~~~~~~~l~~kil~Tl~il~iy~lG~~IPlPGi~~~~~~~~~~~~~~~~~~~l~~-~--~~~~~~slfsLGI~PyItAs 96 (451)
.+.++++|+|+|++||++++++||+|++||+||+|.++.++.. +.+..+.+ + |+++|+|+|||||+||||||
T Consensus 4 ~~~~~~~~l~~ki~~Tl~~l~iyrlG~~IPiPGi~~~~~~~~~-----~~~~~~~~~fsGG~~~~~slfsLGI~PyItAs 78 (404)
T PRK12417 4 LKKFEYKIIYKKILFTCFILFIYILGSNISIPFVSYNDMLGGH-----ESFLKIAAANTGGDLRTLNIFSLGLGPWMTSM 78 (404)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhccCcCCCCCHHHhcCcc-----chHHHHHHHhcccccccCcHHHHccHHHHHHH
Confidence 3467889999999999999999999999999999998754311 12222222 2 56889999999999999999
Q ss_pred HHHHHHHhH-hhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 013035 97 ILMQVLCHI-VPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTM 175 (451)
Q Consensus 97 Ii~Qll~~~-~p~l~~l~~~g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~~~~~~~~~~~~~~~~~ivl~LvaG~~il 175 (451)
|+||+++.. .|++++++|| |+||+ |||+|+++|++||++++. ...+.. .....+.+.++++|+||++++
T Consensus 79 II~QLL~~~~~~~l~~~~ke-e~gr~-----~r~ltl~la~iQs~~~~~-~~~~~~---~~~~~~~~~~~l~L~aGt~~~ 148 (404)
T PRK12417 79 IILQLFSYRKRDGLMKQTIE-EQHYR-----ERILTLIIAVIQSLAVIL-SLPSKE---RISQTNILLNTLILVTGTMFL 148 (404)
T ss_pred HHHHHHHhCCCcchhhcChH-HHHHH-----HHHHHHHHHHHHHHHHHH-Hhcccc---cchhhHHHHHHHHHHHHHHHH
Confidence 999999988 8999999887 77775 499999999999999864 332211 111135678999999999999
Q ss_pred HHHhhhhhccCCCcchHHHHHHHHhhHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhhcceEEeeEeecc
Q 013035 176 SWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYG 255 (451)
Q Consensus 176 ~wL~e~it~~GiGnG~SliI~~~I~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iv~~~~~~rrIPi~~~~ 255 (451)
+||||+|||||+| |+|++|++||++++|+++.+.+.... .. ....+.++++++..++++|++|||||+||++
T Consensus 149 ~WL~E~it~~GIG-G~SliI~~~Iv~~~p~~~~~~~~~~~-----~~--~~~~~~~~~~~i~~~v~~~~~~rrIPi~~~~ 220 (404)
T PRK12417 149 VWLSDLNARYGIG-GPMPIVLVSMIKSIPQDVIEYIDASH-----IV--IILLILLVIITLFFLYFIELVEYRIPYNDIM 220 (404)
T ss_pred HHHHHHHhCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHH-----HH--HHHHHHHHHHHHHHHHHHhheEEEEEEEEhh
Confidence 9999999999999 99999999999999999877653211 11 1112223333455688999999999999987
Q ss_pred ccccccccCCCCCCCCCCccccccccCCcchHHHHHHHHHhHHHHHHHhCCc-----hHHHHHHHcCCCCCCCCcchHHH
Q 013035 256 FKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSP-----FWQHVKEILNPETSVGARPWVYY 330 (451)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiifassll~~p~~i~~~l~~~-----~~~~~~~~l~~~~~~~~~~~i~~ 330 (451)
+.. ++ .+++|+|+|+|+||+||+||||+++++|+++++++.+. |.+....++++. +|+|.
T Consensus 221 ~~~--~~-------~~~sylPiKlN~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 285 (404)
T PRK12417 221 NHN--RF-------KMYSYLSIKLNPAGGMPIMYSMSLLVFPQYIIILILSIFPNNSGISADMDMLSFG------SPLGV 285 (404)
T ss_pred hhc--cC-------CCCcceeeeecccccHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHcCCC------CcHHH
Confidence 531 11 25699999999999999999999999999999986321 222233334332 46789
Q ss_pred HHHHHHHHHHHHHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHhhcc
Q 013035 331 TIYAFFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRI 408 (451)
Q Consensus 331 ~iy~~~i~~Fs~f~--~~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~~~~~~~~~~ 408 (451)
++|++++++||||| +..||||+||||||||++|||+||||+|+|||+|+++|+|++||+|++++|++|.+++.. + .
T Consensus 286 ~~y~~lii~fs~fys~i~~nP~diAe~lkk~g~~IpGiRPG~~T~~yL~~vi~r~t~~Gai~l~~ia~lP~~~~~~-~-~ 363 (404)
T PRK12417 286 TVYLILQFLLSYFFSFVNINTKQIAKDMLKSGNYIPGVYPGKDTERYLNYIARRFSWFGALFVTVIAGIPLYFTLF-D-P 363 (404)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-C
Confidence 99999999999999 456999999999999999999999999999999999999999999999999999998754 1 1
Q ss_pred C-CccccccchhHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 013035 409 N-EGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRR 448 (451)
Q Consensus 409 ~-~~~~~~gtsllI~V~v~~~~~~qi~~~~~~~~y~~~~~~ 448 (451)
+ .++.++|||++|+|||++||.||+|+++.+++|++++++
T Consensus 364 ~~~~~~~ggtsllI~Vgv~ldt~~qi~s~l~~~~Y~~~~~~ 404 (404)
T PRK12417 364 HLSTEIYFSGQFMMFVGMSFNIADEIRALLYFDKYKPLLNQ 404 (404)
T ss_pred ccccceeccchheehhhhHHHHHHHHHHHHHHHHHhHHhcC
Confidence 1 125689999999999999999999999999999999874
No 7
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=100.00 E-value=2.3e-87 Score=693.70 Aligned_cols=398 Identities=28% Similarity=0.427 Sum_probs=318.4
Q ss_pred HHHHHHHHHHHHHHHhCccccCCCccCCcchhhhhhhccCccc---hhhcccccccchhhhcCchhHHhHHHHHHHHHh-
Q 013035 29 RRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVD---ELGDFGAELKLSFFQLGISPQIVASILMQVLCH- 104 (451)
Q Consensus 29 ~~kil~Tl~il~iy~lG~~IPlPGi~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~slfsLGI~PyItAsIi~Qll~~- 104 (451)
|+|++||++++++||+|++||+||+|.++.++...+ +++. ++...+|++|+|+|+|||+|||||||+||+++.
T Consensus 1 ~~ki~~Tl~~l~iyrlg~~IPlpGi~~~~~~~~~~~---~~~~~~~~~~sgga~~~~slf~LGI~PyItAsIi~QLL~~~ 77 (410)
T TIGR00967 1 REKLLFTLGLLVLFRIGTFIPVPGIDASAFQQDIQQ---NGIFNLLNLFSGGALNQGSIFALGISPYITASIIIQLLTGD 77 (410)
T ss_pred CchHHHHHHHHHHHHHHccCCCCCCCHHHHhhhhcc---ccHHHHHHHHhccccccccHHHHccHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999865442211 2222 233336789999999999999999999999975
Q ss_pred HhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 013035 105 IVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISE 184 (451)
Q Consensus 105 ~~p~l~~l~~~g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~~~~~~~~~~~~~~~~~ivl~LvaG~~il~wL~e~it~ 184 (451)
..|.+++++||||+||+|+|++||++|+++|++||.+++..... +. ..+++..+.+.++++|++|+++++||||+|||
T Consensus 78 ~~~~l~~~~~~g~~gr~k~~~~tr~lt~~~a~iQs~~~~~~~~~-~~-~~~~~~~~~~~~v~~L~~Gs~~~~wL~e~it~ 155 (410)
T TIGR00967 78 VPPLLQLQKKEGEIGRRKINQLTRYLTLILAFIQSLGIVMTGMY-GY-VGDPGAFFYLLIVIQLTTGSMIVMWLGEQITK 155 (410)
T ss_pred cChHHHHHhhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hh-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 58888888999999999999999999999999999998622221 11 12234446778899999999999999999999
Q ss_pred cCCCcchHHHHHHHHhhHHHHHHHHHHHHhh--cCC-cc---hHHHHHHHHHHHHHHHHHHHHhhcceEEeeEeeccccc
Q 013035 185 SGFGQGSSLIICVGILTGYTETLYKMLSQLL--GSS-VR---WWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKL 258 (451)
Q Consensus 185 ~GiGnG~SliI~~~I~~~lp~~~~~~~~~~~--~~~-~~---~~~~~~~~~~i~~~~~~~iv~~~~~~rrIPi~~~~~~~ 258 (451)
||+|||+|++|++||++++|+++.+...... .+. .+ ..+. +..+..++++++.++++|++|||||+||+|++.
T Consensus 156 ~GiGnG~SliI~~gI~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~IPi~~~~~~~ 234 (410)
T TIGR00967 156 YGIGNGISLLIFAGIIATIPSGLLQPTEVRQSKVRDLISFLQNLPF-LLYLIATIIVFAVVVFVQQARRKIPIQSAKRQG 234 (410)
T ss_pred cCcccCcHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHH-HHHHHHHHHHHHHHheeeeeEEEEEEEEhhhhc
Confidence 9999999999999999999999987664211 111 11 1112 222333344566689999999999999997543
Q ss_pred cccccCCCCCCCCCCccccccccCCcchHHHHHHHHHhHHHHHHHhCCchHHHHHHHcCCCCCCCCcchHHHHHHHHHHH
Q 013035 259 ASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVF 338 (451)
Q Consensus 259 ~~~~~~~~~~~~~~~ylPiKln~aGvmPiifassll~~p~~i~~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~iy~~~i~ 338 (451)
+++ .++++|+|+|+||+|+||+||||+++++|+++++++.+.+.. .++.+++..++..+|+|.++|.++++
T Consensus 235 ~~~-------~~~~~~iPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~y~~lii 305 (410)
T TIGR00967 235 GRR-------GSQSTYLPLKLNYAGVIPVIFASALLSNPATISQFLNSNQGG--AWFLNPILSLSLSDPIGAILYLILII 305 (410)
T ss_pred CCC-------CCccceeeeEeeccccHHHHHHHHHHHHHHHHHHHhcCCcch--hHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 211 346799999999999999999999999999999987433211 11111222222335789999999999
Q ss_pred HHHHHHh--ccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHhhccCCcccccc
Q 013035 339 LFNIFDI--ANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGF 416 (451)
Q Consensus 339 ~Fs~f~~--~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~~~~~~~~~~~~~~~~~g 416 (451)
+||+||. ..||||+||||||+|++|||+||||+|+|||+|+++|+|++||++++++|++|++++... +......+||
T Consensus 306 ~Fs~f~~~~~~~p~~iA~~lkk~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~~p~l~~~~~-~~~~~~~~gg 384 (410)
T TIGR00967 306 FFSFFYVELQLNPEDMAKNLKKQGMFIPGIRPGKMTEKYLKRVIPRLTFVGSLFLGLIALLPNFLGAIG-GLPTSKGLGG 384 (410)
T ss_pred HHHHHHHHHccCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccccCch
Confidence 9999994 468999999999999999999999999999999999999999999999999999998752 2222224789
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhHHH
Q 013035 417 TSVLIIVGSIIELRRSYQAYNVMPSL 442 (451)
Q Consensus 417 tsllI~V~v~~~~~~qi~~~~~~~~y 442 (451)
||++|+||+++|++||+++++.++||
T Consensus 385 tsiLI~Vgv~~~~~~qi~~~~~~~~y 410 (410)
T TIGR00967 385 TSLLIVVGVAIDTYKQLESYLISRNY 410 (410)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999986
No 8
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=100.00 E-value=1e-82 Score=655.24 Aligned_cols=388 Identities=18% Similarity=0.306 Sum_probs=304.1
Q ss_pred hhHHHHHHHHHHHHHHHhCccccCCCccCCcchhhhhhhccCccchhhcc--cccccchhhhcCchhHHhHHHHHHHHHh
Q 013035 27 EIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF--GAELKLSFFQLGISPQIVASILMQVLCH 104 (451)
Q Consensus 27 ~l~~kil~Tl~il~iy~lG~~IPlPGi~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~slfsLGI~PyItAsIi~Qll~~ 104 (451)
.+|+|++||++++++||+|++||+||+|.+.. + +.+...+.+.+++.+ |+.+++|+|+|||+|||||||+||+++.
T Consensus 1 ~~~~ri~~Tl~~l~iyrlgs~IPlpGi~~~~~-~-~~~~~~~~l~~l~~~~gg~~~~~slfsLGI~PyItAsIi~QLL~~ 78 (395)
T TIGR02920 1 IIYKKILFTCFILIIYVLGSYIPIPFVEVSKQ-D-MEGVKNSFFKIAIANTGGNLTTLSIFSLGLGPWMTSMIILQLFSF 78 (395)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCCCcChhhH-H-HhcccccHHHHHHHHhcCccccCcHHHhCcHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999998762 1 111112244445544 3467889999999999999999999998
Q ss_pred -HhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 013035 105 -IVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTIS 183 (451)
Q Consensus 105 -~~p~l~~l~~~g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~~~~~~~~~~~~~~~~~ivl~LvaG~~il~wL~e~it 183 (451)
.+|++++++|| |+|| .|||+|+++|++||.+++. ...+.. .........++++|++|+++++||||++|
T Consensus 79 ~~~~~l~~~~~~-~~~~-----~tr~ltl~~a~iQs~~~~~-~~~~~~---~~~~~~~~~~vl~L~~Gt~iv~wL~E~it 148 (395)
T TIGR02920 79 TKSDGFDAQSPK-EQQY-----RERFLTLIIAIIQGLAIIH-SFTNKN---GLSDFNMLLATLILVTGTCLLVWLADLNA 148 (395)
T ss_pred CcCcchhhhCHH-HhhH-----HHHHHHHHHHHHHHHHHHH-Hhhccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999876 4333 3999999999999999864 332211 11113466778999999999999999999
Q ss_pred ccCCCcchHHHHHHHHhhHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhhcceEEeeEeecccccccccc
Q 013035 184 ESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAR 263 (451)
Q Consensus 184 ~~GiGnG~SliI~~~I~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iv~~~~~~rrIPi~~~~~~~~~~~~ 263 (451)
|||+| |+|++|++||++++|+++.+..+. +. . ..+.....++++++++++++|+++||||++|++++. +
T Consensus 149 ~~GiG-G~sllI~~~I~s~~~~~~~~~~~~---~~--~-~~~~~~~~~~~~~i~~~v~~~~~~~rIpv~~~~~~~----~ 217 (395)
T TIGR02920 149 KYGIG-GSMPIVLVSMLKNIPSNVFELFQM---SY--I-WLIALLILLTLVALFLLAFIERAEYRIPVNDISLHN----R 217 (395)
T ss_pred CCCcc-hHHHHHHHHHHHHHHHHHHHHHhc---ch--H-HHHHHHHHHHHHHHHHHHheecceEEEEEEEchhhc----c
Confidence 99999 999999999999999998765531 11 1 111222233344455588999999999999986431 1
Q ss_pred CCCCCCCCCCccccccccCCcchHHHHHHHHHhHHHHHHHhCCchHH--HHHHHcCCCCCCCCcchHHHHHHHHHHHHHH
Q 013035 264 EDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQ--HVKEILNPETSVGARPWVYYTIYAFFVFLFN 341 (451)
Q Consensus 264 ~~~~~~~~~~ylPiKln~aGvmPiifassll~~p~~i~~~l~~~~~~--~~~~~l~~~~~~~~~~~i~~~iy~~~i~~Fs 341 (451)
+++++|+|+|+||+|+||+||||+++++|+++++.+.+.+.+ ...++.. + ++..+++|.++|++++++||
T Consensus 218 -----~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~~~~-~--~~~~~~~~~i~y~~lii~fs 289 (395)
T TIGR02920 218 -----SNLMSYLPIKLNPAGGMMYMYVMSLLMLPQYIIILLGRIFPNSSLINNWVF-Q--FSFSSPVGILIYLILQMLLS 289 (395)
T ss_pred -----CCCCcccceEecccCcHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHhh-c--cCCcchHHHHHHHHHHHHHH
Confidence 135699999999999999999999999996665443211100 0111211 1 11224679999999999999
Q ss_pred HHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHhhccCCccccccchh
Q 013035 342 IFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSV 419 (451)
Q Consensus 342 ~f~--~~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~~~~~~~~~~~~~~~~~gtsl 419 (451)
+|| +..||||+||||||+|++|||+||||+|+|||+|+++|+|++||++++++|++|.+++..++.. .++.++|||+
T Consensus 290 ~fys~i~~nP~diA~~Lkk~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~lP~~~~~~~~~~-~~~~~ggtsl 368 (395)
T TIGR02920 290 YFFTFVNINPKEISKSFRKSGNYIPGIAPGKDTQRYLNRLARRFCWFGGVFNAFQLGIPLYFALFVPHL-LTEAYIPGQF 368 (395)
T ss_pred HHHHHheECHHHHHHHHHHCCCCccCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cceeehhhhh
Confidence 998 3568999999999999999999999999999999999999999999999999999998664422 2467899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 013035 420 LIIVGSIIELRRSYQAYNVMPSLSKAL 446 (451)
Q Consensus 420 lI~V~v~~~~~~qi~~~~~~~~y~~~~ 446 (451)
+|+|||++||.||+|+++.++||++++
T Consensus 369 lI~vgv~ldt~~qi~~~~~~~~Y~~~~ 395 (395)
T TIGR02920 369 MMITGMSFNIADEIRTILYFDRYKPLL 395 (395)
T ss_pred hhhhhhHHhHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999874
No 9
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=100.00 E-value=7.8e-83 Score=667.49 Aligned_cols=402 Identities=17% Similarity=0.210 Sum_probs=323.3
Q ss_pred cchhhhhhh-HHhhhhhhccccchhhHHHHHHHHHHHHHHHhCccccCCCccCCcchhhhhhhccCccchhhcccccccc
Q 013035 4 NRFLNFIRL-SSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKL 82 (451)
Q Consensus 4 ~~~~~~~~~-~~~~p~~~~~~~~~~l~~kil~Tl~il~iy~lG~~IPlPGi~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (451)
.|++|+.|+ .+.+||+++|.++.++|+|++||++++++||+|++||+||+|.++.+| ++.++++..+.+++
T Consensus 5 ~~~~~~~~~~~~~lP~v~~p~~~~~lr~Kil~T~~~l~iy~lg~~IPlpGi~~~~~~~--------~~~~~~~ifag~~~ 76 (474)
T PTZ00219 5 TRFLNLLRPAMAILPEVAEPDRKIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSSSD--------PFYWMRVILASNRG 76 (474)
T ss_pred chHHHHHHHHHHhCCCccCCccCccHHHHHHHHHHHHHHHHHhccCcCCCcChhhccc--------hHHHHHHHHhcCcc
Confidence 588999885 999999999999999999999999999999999999999999875432 45556565455699
Q ss_pred hhhhcCchhHHhHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHH
Q 013035 83 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVM 162 (451)
Q Consensus 83 slfsLGI~PyItAsIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~~~~~~~~~~~~~~~~ 162 (451)
|+|+|||+|||||||+||++++. ++.+.+++.+++|||+|++||++|+++|++||++++. ...++. ..+.+....+
T Consensus 77 slf~LGI~PyItAsII~QLL~~~--~l~~~~~~~~~~r~k~~~~tr~lti~la~iqa~~~~~-~~~~g~-~~~~~~~~~~ 152 (474)
T PTZ00219 77 TLMELGISPIVTSSMVMQLLAGS--KIIDVDQNNKEDRALFEGAQKLLGLLITLGEAVAYVW-SGMYGD-ISEIGAGNAI 152 (474)
T ss_pred hHHHhccHHHHHHHHHHHHHhhC--CcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccc-ccCccHHHHH
Confidence 99999999999999999999764 4555666667779999999999999999999999863 311221 1123333577
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc-cCCCcchHHHHHHHHhhHHHHHHHHHHHHh-------------------hc-CC-cc
Q 013035 163 VTAFLLVCGAMTMSWICDTISE-SGFGQGSSLIICVGILTGYTETLYKMLSQL-------------------LG-SS-VR 220 (451)
Q Consensus 163 ~ivl~LvaG~~il~wL~e~it~-~GiGnG~SliI~~~I~~~lp~~~~~~~~~~-------------------~~-~~-~~ 220 (451)
++++||++|+++++|+||++|| ||+|||+|++|++||++++||+.++..... .. +. .+
T Consensus 153 ~iilqL~~g~~~v~wL~E~Itkg~GIGnGiSL~I~agI~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 232 (474)
T PTZ00219 153 LIILQLFFAGIVVILLDELLQKGYGLGSGISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRA 232 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHhHHHhcccccccccccccchhhHHHHHHHHhhcccccch
Confidence 8899999999999999999999 999999999999999999997655311000 00 00 00
Q ss_pred h--------HHHHHHHHHHHHHHHHHHHHhhcceEEeeEeeccccccccccCCCCCCCCCCccccccccCCcchHHHHHH
Q 013035 221 W--------WPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTY 292 (451)
Q Consensus 221 ~--------~~~~~~~~~i~~~~~~~iv~~~~~~rrIPi~~~~~~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiifass 292 (451)
. .+. +..+.+++++++.++++++++||||++|+|++ ++++++|+|+||+|+||+|||++
T Consensus 233 l~~~~~r~~l~~-~~~~~~~~~i~~~vv~~~~~~~~IPi~~~~~~------------g~~~~~PiKln~agvmPiIfass 299 (474)
T PTZ00219 233 LKEAFYRPHLPN-LTNLLATVLVFLVVIYFQGFRVDLPLKSQKVR------------GQQQSYPIKLFYTSNIPIILQTA 299 (474)
T ss_pred hhhhhhhccccc-HHHHHHHHHHHHhheeeeeeEEEEeeeccccc------------CcCcccceeecccccHHHHHHHH
Confidence 0 001 11123334456668899999999999998642 34577799999999999999999
Q ss_pred HHHhHHHHHHHhCC----c--------hH-----------HHHHHHcCCCCCCC--CcchHHHHHHHHHHHHHHHHHh--
Q 013035 293 LLAFPSILASILGS----P--------FW-----------QHVKEILNPETSVG--ARPWVYYTIYAFFVFLFNIFDI-- 345 (451)
Q Consensus 293 ll~~p~~i~~~l~~----~--------~~-----------~~~~~~l~~~~~~~--~~~~i~~~iy~~~i~~Fs~f~~-- 345 (451)
++++|+++++++.+ + |. +++.+|++|+.++. ..+|+|.++|++++++||+||.
T Consensus 300 ll~~p~~i~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~v~gl~~~l~~p~~~~~~~~~p~~~iiy~ilii~fs~ffs~~ 379 (474)
T PTZ00219 300 LVSNLYFFSQILYRRFKNNFLINLLGQWQEVEYSGQSVPVGGLAYYLSPPNSFSDIINDPIHTILYIVFVLFSCALFSKT 379 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCcccccccceeccccccccccchhHHhhcCCCcchhhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988621 1 21 12666777754432 1346789999999999999762
Q ss_pred c-----cChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHhhccCCccccccchhH
Q 013035 346 A-----NLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVL 420 (451)
Q Consensus 346 ~-----~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~~~~~~~~~~~~~~~~~gtsll 420 (451)
. .||||+||||||+|++|||+||||+|+|||+|+++|+|++||+|++++|++|++++.. + ||||+|
T Consensus 380 ~v~~sg~~p~~iA~~lkk~g~~IpG~RpGk~t~~yL~k~i~r~t~~Ga~~l~~ia~lp~~~~~~----~-----gGTslL 450 (474)
T PTZ00219 380 WIEVSGSSAKDVAKQLKDQGMGMVGYRDSSSMVRVLNRYIPTAASFGGMCIGALTILADFLGAI----G-----SGTGIL 450 (474)
T ss_pred HHHHhCCCHHHHHHHHHHcCCCccCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C-----Cchhhh
Confidence 2 5899999999999999999999999999999999999999999999999999999831 2 899999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 013035 421 IIVGSIIELRRSYQAYNVM 439 (451)
Q Consensus 421 I~V~v~~~~~~qi~~~~~~ 439 (451)
|+||++.+.+|++..++.+
T Consensus 451 I~VgV~~~~~e~~~~e~~~ 469 (474)
T PTZ00219 451 LAVTIIYQYYETFAKEKEQ 469 (474)
T ss_pred hhHHHHHHHHHHHHHHHhh
Confidence 9999999999999888655
No 10
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=100.00 E-value=5.1e-73 Score=576.44 Aligned_cols=331 Identities=31% Similarity=0.535 Sum_probs=275.5
Q ss_pred hhhhcCchhHHhHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-----ccc
Q 013035 83 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAA-----SHS 157 (451)
Q Consensus 83 slfsLGI~PyItAsIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~~~~~~~~-----~~~ 157 (451)
|+|+|||+|||||||+||++ ..|+++|+|++||+||+|++++||++|+++|++||++++.....++.... +.+
T Consensus 1 SlfsLGI~PyitAsIi~Qll--~~~~l~~l~~~g~~~~~~~~~~tr~ltl~~a~iqa~~~~~~~~~~~~~~~~~~~~~~~ 78 (346)
T PF00344_consen 1 SLFSLGIGPYITASIIMQLL--IIPKLIKLQKEGEEGRKKLNRYTRYLTLILAVIQAIGIVLSLGYYGSVSPLILSSGSG 78 (346)
T ss_dssp BTTSSTTHHHHHHHHHHHHH--HSSSSSSHSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTC-TTSTTC
T ss_pred ChHhhccHHHHHHHHHHHHH--hcccHHHhhhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchH
Confidence 79999999999999999999 67899999999999999999999999999999999999754444332111 123
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHhhHHHHHHHHHHHHhh---cCCcchHHHHHHHHHHHHH
Q 013035 158 VKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLL---GSSVRWWPFMLGLLGVFTI 234 (451)
Q Consensus 158 ~~~~~~ivl~LvaG~~il~wL~e~it~~GiGnG~SliI~~~I~~~lp~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~ 234 (451)
....++++++|++|+++++||||+|||||+|||+|++|++||++++|+++.+.++... +...++.. .+..+.++++
T Consensus 79 ~~~~~~i~l~L~~G~~i~~wL~e~it~~GiGnG~SliI~~~I~~~~~~~i~~~~~~~~~~~~~~~~~~~-~l~~~~~~l~ 157 (346)
T PF00344_consen 79 FINYLLIVLQLVAGSMILIWLSELITKYGIGNGISLIIFAGIISNLPWSIINLFQLLSNKAGSLSNALF-LLIILIITLV 157 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTSSSTHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHH-HHHHHHHHHH
Confidence 4556899999999999999999999999999999999999999999999888776554 11223322 2333444455
Q ss_pred HHHHHHHhhcceEEeeEeeccccccccccCCCCCCCCCCccccccccCCcchHHHHHHHHHhHHHHHHHhCCch----H-
Q 013035 235 VTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPF----W- 309 (451)
Q Consensus 235 ~~~~iv~~~~~~rrIPi~~~~~~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiifassll~~p~~i~~~l~~~~----~- 309 (451)
++.+++++|++|||||+||++++ + ..+++++|+|+|+||+|+||+|||++++++|+++++++.+.+ .
T Consensus 158 ~~~~~v~l~~~~~rIPi~~~~~~-~-------~~~~~~~ylPikln~aG~mPiifa~sll~~p~~i~~~l~~~~~~~~~~ 229 (346)
T PF00344_consen 158 VIALVVYLQEAERRIPIQYARIV-N-------SSRGQSSYLPIKLNYAGVMPIIFASSLLSLPQYIAQFLNSQFPNNWLV 229 (346)
T ss_dssp HHHHHHHHHHCEEEECEBBSSSB----------SSSBCSCEEEETTSSTHHHHHHHHHHHHHHHHHHHHCTTCSCCSCCS
T ss_pred HHHhheeeeeeEEEEEEEecccc-c-------cCcccceeeeeeccccccchHHHHHHHHHHHHHHHHhccCCCccccHH
Confidence 56778999999999999999762 1 123568999999999999999999999999999999985422 1
Q ss_pred HHHHHHcCCCCCCCCcchHHHHHHHHHHHHHHHHHh--ccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHH
Q 013035 310 QHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDI--ANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWG 387 (451)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~i~~~iy~~~i~~Fs~f~~--~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i~~~t~~G 387 (451)
.++.++++.+ ...++|..+|.+++++||+||. ..||||+||||||+|++|||+|||++|+|||+|+++|++++|
T Consensus 230 ~~i~~~~~~~----~~~~~y~~~~~~li~~Fs~~~~~~~~~p~~iA~~lkk~g~~I~GirpG~~T~~yL~~~i~~~~~~G 305 (346)
T PF00344_consen 230 SGIAYYFSQN----LNSPLYIIFYLILIILFSYFFSFININPKDIAENLKKSGDYIPGIRPGKPTEKYLNKVIPRLSFLG 305 (346)
T ss_dssp SCCHHHTSSS----HHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHCHCTTSSSSTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccC----cchHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhCCEeCCCCCChhHHHHHHHHHHHHhhhh
Confidence 2344555211 1247899999999999999995 357999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCccccccchhHHHHHHHHHHHH
Q 013035 388 GLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRR 431 (451)
Q Consensus 388 a~~l~~la~~p~~~~~~~~~~~~~~~~~gtsllI~V~v~~~~~~ 431 (451)
|++++++|++|++++.+.+ .++.++|||++|+||+++|++|
T Consensus 306 ~~~l~~ia~~p~~~~~~~~---~~~~~~gtslli~V~v~~~~~~ 346 (346)
T PF00344_consen 306 ALFLALIAVLPLIFGLFGG---SSLFFGGTSLLIIVGVIIDTYE 346 (346)
T ss_dssp HHHHHHHHHHHHHHTTSSS---CSCCCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcc---cchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999987643 4566899999999999999987
No 11
>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-61 Score=470.49 Aligned_cols=407 Identities=16% Similarity=0.195 Sum_probs=340.3
Q ss_pred Ccccchhhhhhh-HHhhhhhhccccchhhHHHHHHHHHHHHHHHhCccccCCCccCCcchhhhhhhccCccchhhccccc
Q 013035 1 MYKNRFLNFIRL-SSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAE 79 (451)
Q Consensus 1 ~~~~~~~~~~~~-~~~~p~~~~~~~~~~l~~kil~Tl~il~iy~lG~~IPlPGi~~~~~~~~~~~~~~~~~~~l~~~~~~ 79 (451)
|--+|++|+.|+ .+.+||++.|.+|.++++|++||...+++|.+.+|||++|+..+... +|++|++...|.
T Consensus 1 m~g~R~l~~vkPf~~~lPEv~~Perk~pf~eK~~wt~i~~~iflv~~QiPLyGi~ssdt~--------DP~yw~Rvilas 72 (476)
T KOG1373|consen 1 MSGFRFLDLVKPFLSFLPEVEAPERKLPFREKLLWTAISLLIFLVCSQIPLYGIMSSDTA--------DPFYWMRVILAS 72 (476)
T ss_pred CCCcchhhhhhhhhccCccccCchhcCcHHHHHHHHHHHHHHHHHHhhccccccccCCCC--------CcHHHHHHHHhc
Confidence 557899999996 99999999999999999999999999999999999999999876543 399999988789
Q ss_pred ccchhhhcCchhHHhHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchh
Q 013035 80 LKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVK 159 (451)
Q Consensus 80 ~~~slfsLGI~PyItAsIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~~~~~~~~~~~~~ 159 (451)
+|.|+++||+.|.+|++.++|+|++. ++.+.+.+.++||+.+|..||.+++++++.|+..++. ...|+.. ++.+..
T Consensus 73 nrgTLMelGisPivtSglimQlLag~--kiIeV~~~~~~DR~Lfn~aQKl~~iii~vgqa~~yV~-tG~yG~p-~dLg~~ 148 (476)
T KOG1373|consen 73 NRGTLMELGISPIVTSGLIMQLLAGS--KIIEVNFNIKEDRELFNGAQKLFAIIITVGQAVVYVM-TGMYGSP-SDLGVG 148 (476)
T ss_pred CCcchhhhccchhhHHHHHHHHHccC--cEEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh-hcccCCh-hhcchh
Confidence 99999999999999999999999998 7788888889999999999999999999999999974 5455532 345566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc-cCCCcchHHHHHHHHhhHHHHHHHHHHH--HhhcC--CcchHHH-H-H------
Q 013035 160 HVMVTAFLLVCGAMTMSWICDTISE-SGFGQGSSLIICVGILTGYTETLYKMLS--QLLGS--SVRWWPF-M-L------ 226 (451)
Q Consensus 160 ~~~~ivl~LvaG~~il~wL~e~it~-~GiGnG~SliI~~~I~~~lp~~~~~~~~--~~~~~--~~~~~~~-~-~------ 226 (451)
.+.++++||+..+.+++.|||+++| ||+|||+|++|.+|||+++.|+.++.-. .-++. +++.+.. . +
T Consensus 149 ~clLii~QL~~Agiiv~lLdEllqKGyGlgSGislfiatnice~ivwkaFsptti~tGrg~efeGAvIalfhll~tr~~k 228 (476)
T KOG1373|consen 149 ICLLIILQLFFAGIIVILLDELLQKGYGLGSGISLFIATNICESIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRKDK 228 (476)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCcCcchhhhhHHHHHHHHHHHhcCceEEecCCCceechHHHHHHHHHHhcchH
Confidence 7889999999999999999999999 9999999999999999999998876421 11110 1111100 0 0
Q ss_pred ----------------HHHHHHHHHHHHHHHhhcceEEeeEeeccccccccccCCCCCCCCCCccccccccCCcchHHHH
Q 013035 227 ----------------GLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTT 290 (451)
Q Consensus 227 ----------------~~~~i~~~~~~~iv~~~~~~rrIPi~~~~~~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiifa 290 (451)
.-+...++++..++|+|.-+.++|++++|. +|+++-+|+|+.|++.||+|+.
T Consensus 229 ~~al~eAF~RqnLPNl~nl~at~lif~iViYlQgfRVeLPirS~r~------------RG~~~~yPIKL~YTsn~pIilq 296 (476)
T KOG1373|consen 229 VRALREAFYRQNLPNLTNLLATVLIFLIVIYLQGFRVELPIRSTRA------------RGQYGSYPIKLFYTSNMPIILQ 296 (476)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhccceEEEeeecchhh------------cccCCccceEeeecCCcHHHHH
Confidence 012333333445677787778999998753 4688999999999999999999
Q ss_pred HHHHHhHHHHHHHhCCc------------hH-----------HHHHHHcCCCCCCCC--cchHHHHHHHHHH----HHHH
Q 013035 291 TYLLAFPSILASILGSP------------FW-----------QHVKEILNPETSVGA--RPWVYYTIYAFFV----FLFN 341 (451)
Q Consensus 291 ssll~~p~~i~~~l~~~------------~~-----------~~~~~~l~~~~~~~~--~~~i~~~iy~~~i----~~Fs 341 (451)
|++.+....++|++... |. .++.+|++|+.++.. .+|+|+++|..+. .+||
T Consensus 297 salvsni~~isqll~~k~~~n~~v~llG~w~~~~~~~~~~p~~glsyy~~pp~s~~~~~~dPi~~i~Yi~fml~sca~Fs 376 (476)
T KOG1373|consen 297 SALVSNIFVISQLLYKKFPGNFLVRLLGVWEDSEGGGRSMPVSGLSYYITPPESFGEALQDPIHFLVYIVFMLGSCALFS 376 (476)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEEeeeecCCCCcccccccceeEecCChHHHHHHhhCcchhHHHHHHHHHHHHHHH
Confidence 99999999999987321 21 256778888877653 5678888888876 4566
Q ss_pred HHHh--cc-ChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHhhccCCccccccch
Q 013035 342 IFDI--AN-LPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTS 418 (451)
Q Consensus 342 ~f~~--~~-~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~~~~~~~~~~~~~~~~~gts 418 (451)
.-|+ +. +|||+|||||+|+..++|+|.+ ++.++|+|+++.++.+||.+++.++++.++++.. + +||+
T Consensus 377 ktWievSgsSarDvAkqlKeQ~mvm~G~RE~-n~~~eLnr~IPtAA~~Gg~~igaltV~~d~lgai----G-----sgtg 446 (476)
T KOG1373|consen 377 KTWIEVSGSSARDVAKQLKEQQMVMRGHRET-NMAKELNRYIPTAAAFGGLCIGALTVLADLLGAI----G-----SGTG 446 (476)
T ss_pred hHHHHHcCCCHHHHHHHHHhccceecCcchh-hHHHHHHhhccHHHHhhhhHHHHHHHHHHHhhcc----c-----CCce
Confidence 6684 44 6999999999999999999997 8999999999999999999999999999999865 4 7999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHH
Q 013035 419 VLIIVGSIIELRRSYQAYNVMPS 441 (451)
Q Consensus 419 llI~V~v~~~~~~qi~~~~~~~~ 441 (451)
+++.+..+++.+|..+.+...+.
T Consensus 447 Illavt~iyqy~E~~~kE~~~~~ 469 (476)
T KOG1373|consen 447 ILLAVTIIYQYFEIFAKEQAQEG 469 (476)
T ss_pred EEeehHHHHHHHHHHHHHHhhcC
Confidence 99999999999999988876654
No 12
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side. The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 []. ; PDB: 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A 1RH5_A 3BO1_A 3BO0_A 2WWA_A 2WW9_A ....
Probab=95.20 E-value=0.0077 Score=40.77 Aligned_cols=34 Identities=18% Similarity=0.060 Sum_probs=22.5
Q ss_pred HHHHhCccccCCCccCCcchhhhhhhccCccchhhccccccc
Q 013035 40 VISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELK 81 (451)
Q Consensus 40 ~iy~lG~~IPlPGi~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 81 (451)
++|.++++|||+|++..... +++++++...|.++
T Consensus 1 ilYl~ls~ipLyG~~~~~~~--------D~f~~~R~i~As~~ 34 (35)
T PF10559_consen 1 ILYLFLSQIPLYGLQSASSS--------DPFYWLRAIFASNR 34 (35)
T ss_dssp HHHHHHHHSB-STSTTTTSS--------CCHTTTHHHHTSST
T ss_pred CEEEEeeCCccccccCCCcC--------CHHHHHHHHHcccC
Confidence 58999999999999444332 36777776545444
No 13
>PF04923 Ninjurin: Ninjurin ; InterPro: IPR007007 Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation of some tissues [].; GO: 0007155 cell adhesion, 0042246 tissue regeneration, 0016021 integral to membrane
Probab=62.51 E-value=23 Score=30.04 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=28.5
Q ss_pred hHHhHHHHHHHHHhH-hhhHHHhhhcChhhHHHHHHHHHHHHHHH
Q 013035 91 PQIVASILMQVLCHI-VPSLVQLRKEGLDGHEKIKSYIWWISLGF 134 (451)
Q Consensus 91 PyItAsIi~Qll~~~-~p~l~~l~~~g~~gr~k~~~~tr~ltl~l 134 (451)
=.++.|+++|++.++ .-...+.+-+.++.+++.++...+.+.+.
T Consensus 46 ~Li~iSlvLQv~vgilli~~~~~n~~~~~~~~~~~~lnn~~~~~v 90 (104)
T PF04923_consen 46 TLISISLVLQVVVGILLIFISRYNINKPEKQRRANRLNNWATILV 90 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 357889999999875 33444455555666666766666655443
No 14
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=38.46 E-value=41 Score=27.51 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=34.0
Q ss_pred cCCccccccCChhhHHHHHHhhhhHHhHHHHHHHHHHHH
Q 013035 359 MGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATS 397 (451)
Q Consensus 359 ~g~~IpGirpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~ 397 (451)
.|.-.||--||.+..-.+.|...+.|.++++.-++....
T Consensus 32 ~g~vv~Gt~~sAP~~~~l~rk~~~TTiiaavi~~~~~~~ 70 (85)
T PF07330_consen 32 AGEVVPGTDPSAPANPRLKRKALITTIIAAVIFAIIYLI 70 (85)
T ss_pred CCCcCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 488899999999999999999999999999877766544
No 15
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=35.52 E-value=1.4e+02 Score=27.37 Aligned_cols=33 Identities=27% Similarity=0.160 Sum_probs=21.7
Q ss_pred cChHHHHHHHHHcCCccccccCChhhHHHHHHhh
Q 013035 347 NLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQ 380 (451)
Q Consensus 347 ~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i 380 (451)
.+|||+|++.+... .++..++.++..+....+.
T Consensus 51 G~P~~iA~~i~~~~-~i~~~~~~~~~~~~~~~i~ 83 (181)
T PF08006_consen 51 GSPKEIAREILAEY-SIKEEEKKKSWRNILRAIL 83 (181)
T ss_pred CCHHHHHHHHHHhh-hhhhhhccchhhhhHHHHH
Confidence 47999999999754 4566665555555554433
No 16
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=33.15 E-value=1.7e+02 Score=25.03 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccc-ccccc---hhHHHHHHHHHHHHHHHHHH
Q 013035 128 WWISLGFAILEAVIVACYSLPYSIY-AASHS---VKHVMVTAFLLVCGAMTMSW 177 (451)
Q Consensus 128 r~ltl~laiiqs~~~~~~~~~~~~~-~~~~~---~~~~~~ivl~LvaG~~il~w 177 (451)
...-+++|++|.++...+....+.- ...++ ..+.+.+++++++|+.-+||
T Consensus 47 ~~~i~~lA~vQi~VqL~~FLHl~~~~~~~wn~~al~Ft~~i~~iiv~GSlWIM~ 100 (109)
T PRK10582 47 LGTILAMAVVQILVHLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMW 100 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455788999999987655443211 11233 23445678889999987777
No 17
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=31.45 E-value=2.1e+02 Score=23.91 Aligned_cols=49 Identities=12% Similarity=0.265 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccccc-ccccc---hhHHHHHHHHHHHHHHHHHH
Q 013035 129 WISLGFAILEAVIVACYSLPYSIY-AASHS---VKHVMVTAFLLVCGAMTMSW 177 (451)
Q Consensus 129 ~ltl~laiiqs~~~~~~~~~~~~~-~~~~~---~~~~~~ivl~LvaG~~il~w 177 (451)
..-+++|++|..+...+....+.- ...++ ..+...+++++++||.-+|+
T Consensus 37 ~~i~~~A~iQi~vqL~~FlHl~~~~~~~~n~~~l~Ft~~i~~iiv~GSiWIm~ 89 (96)
T TIGR02847 37 VIIIVLAVVQILVHLVFFLHLNTSSEQRWNLISLLFTILIIFILIGGSIWIMH 89 (96)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455678999999986655443211 11233 23456778899999988877
No 18
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=30.95 E-value=4.5e+02 Score=24.60 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHHHHHHHHhccChHHHHHHHHHcCCccccccCCh-hhHHHHHHhhhhHHhHH
Q 013035 326 PWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGK-ATIEYLTKIQASTRFWG 387 (451)
Q Consensus 326 ~~i~~~iy~~~i~~Fs~f~~~~~p~~iAe~Lkk~g~~IpGirpG~-~T~~yL~~~i~~~t~~G 387 (451)
.++++.+..+.+.+||.||- +--..+||+|++. =|..||.| +|.+-|+.-+ .+.++|
T Consensus 57 ~gl~~a~~gl~~l~~si~~~-fry~Rlar~L~~~---~~~~~P~k~~~~~~l~~Gl-~~nl~G 114 (183)
T PF12263_consen 57 IGLFLAICGLVALFFSIFWS-FRYTRLARRLRSP---NPAKRPSKADVVRLLRIGL-IINLVG 114 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccc---CCCCCCCHHHHHHHHHHHH-HHHHHH
Confidence 35666667777777777661 1237899999944 57889987 4555554432 244444
No 19
>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.
Probab=30.92 E-value=94 Score=27.38 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=21.3
Q ss_pred CCccccccCChhhHHHHHHhhhhHHhHHHHH
Q 013035 360 GARIPNVKPGKATIEYLTKIQASTRFWGGLL 390 (451)
Q Consensus 360 g~~IpGirpG~~T~~yL~~~i~~~t~~Ga~~ 390 (451)
...|||+|||+.-.+-+.+....- +.....
T Consensus 38 ~~~ipGFRkGK~P~~vi~~~~g~~-i~~~~~ 67 (145)
T PF05697_consen 38 KVKIPGFRKGKAPRNVIEKRYGKE-IREEAI 67 (145)
T ss_dssp TTTBTTS-TTSS-HHHHHHHHCHH-HHHHHH
T ss_pred hCCCCCCCCCCCCHHHHHHHHHHH-HHHHHH
Confidence 558999999998888888887765 555444
No 20
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=29.79 E-value=2.9e+02 Score=23.50 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCccccccchhHHHHHHHHHHHHHHHHHHhhHHHH
Q 013035 386 WGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLS 443 (451)
Q Consensus 386 ~Ga~~l~~la~~p~~~~~~~~~~~~~~~~~gtsllI~V~v~~~~~~qi~~~~~~~~y~ 443 (451)
+-++.+.+++..|+..+...+-+|-. .|++++..+++..-..-....+....+.+
T Consensus 38 ~~~i~~l~~~ifP~~~~~vA~~lGi~---~~~n~lf~~~i~~ll~~~~~l~~~is~le 92 (115)
T PF10066_consen 38 VFSIILLILSIFPNILDWVAKLLGIG---RPPNLLFYLGILFLLVIIFSLYVRISRLE 92 (115)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667778898877543322211 46666666665555544444444433333
No 21
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=29.48 E-value=50 Score=34.45 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHH-H---hc-c---ChHHHHHHHHHcCCccccccC----ChhhHHHHHHhhhhHHhHH
Q 013035 328 VYYTIYAFFVFLFNIF-D---IA-N---LPKEIADYLNKMGARIPNVKP----GKATIEYLTKIQASTRFWG 387 (451)
Q Consensus 328 i~~~iy~~~i~~Fs~f-~---~~-~---~p~~iAe~Lkk~g~~IpGirp----G~~T~~yL~~~i~~~t~~G 387 (451)
+.+++++++++++|-| | +. + .++++.+.|++.|.. ||.+- =+..++.|.+-.+.++++|
T Consensus 89 ~G~~~f~~ll~~lS~fIW~IeI~Gn~~~t~~~i~~~L~e~Gi~-~G~~k~~id~~~ie~~l~~~~~~i~WV~ 159 (382)
T TIGR02876 89 IGILLFLAIVYFLSNFIWKIDITGVKGETPYEIRKQLKEMGIK-PGVWKFSVDVYKLERKLLDRVPEIMWAG 159 (382)
T ss_pred HHHHHHHHHHHHHhheEEEEEEECCCCCCHHHHHHHHHHcCCC-cCeeeCCCCHHHHHHHHHhhCCCcEEEE
Confidence 4555677777676665 7 22 2 489999999999833 23221 1234456666666666655
No 22
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=28.69 E-value=2.5e+02 Score=23.36 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhcccccc-ccccc---hhHHHHHHHHHHHHHHHHHH
Q 013035 130 ISLGFAILEAVIVACYSLPYSIY-AASHS---VKHVMVTAFLLVCGAMTMSW 177 (451)
Q Consensus 130 ltl~laiiqs~~~~~~~~~~~~~-~~~~~---~~~~~~ivl~LvaG~~il~w 177 (451)
.-+++|++|..+...+...-+.- ...++ ..+...+++++++||.-+|+
T Consensus 40 ~i~~lA~iQi~VqL~~FLHm~~~~~~~~n~~~l~ft~~i~~i~v~GSlWIm~ 91 (94)
T TIGR02901 40 IIIIFAFIQAGLQLIMFMHAGESEDGKVQIYNIYYSAFIALVTVFGSLWVMV 91 (94)
T ss_pred HHHHHHHHHHHHHHHHheeecCCcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44678999999986655433211 11133 23456778889999987776
No 23
>PRK01490 tig trigger factor; Provisional
Probab=26.17 E-value=58 Score=34.35 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCccccccCChhhHHHHHHhhhh
Q 013035 350 KEIADYLNKMGARIPNVKPGKATIEYLTKIQAS 382 (451)
Q Consensus 350 ~~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i~~ 382 (451)
++.-++++|+ ..|||+|||+.-...+.+....
T Consensus 29 ~~~~~~~~k~-~~ipGFRkGkvP~~ii~k~~g~ 60 (435)
T PRK01490 29 DKALKKLAKT-VRIPGFRKGKVPRKIVEQRYGE 60 (435)
T ss_pred HHHHHHHHhh-CcCCCccCCCCCHHHHHHHHhH
Confidence 3344445544 7999999999888888887654
No 24
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=25.10 E-value=3.3e+02 Score=23.45 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHhcccccc-ccccc---hhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 013035 129 WISLGFAILEAVIVACYSLPYSIY-AASHS---VKHVMVTAFLLVCGAMTMSWICDTISE 184 (451)
Q Consensus 129 ~ltl~laiiqs~~~~~~~~~~~~~-~~~~~---~~~~~~ivl~LvaG~~il~wL~e~it~ 184 (451)
...+.+|++|......+...-+.- ...++ ..+.+.++++.++|++-+|+=.+.++.
T Consensus 50 ~~i~~lA~iQi~vqLvyFlHM~~~~eg~w~~~~~iFt~~i~vivvvGS~Wvm~~~n~~mm 109 (111)
T COG3125 50 IIILGLAVIQILVHLVYFLHMNTKSEGRWNMGALIFTIFIIVIVVVGSIWVMHNLNHNMM 109 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcccceehHHHHHHHHHHHHHHHHHHHHHHccccccC
Confidence 566889999999976654432211 11233 234456778888999998887766543
No 25
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=23.02 E-value=3.9e+02 Score=31.05 Aligned_cols=89 Identities=10% Similarity=0.129 Sum_probs=51.5
Q ss_pred cChHHHHHHHHHcCCccccccCChh-hHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHhhccCCccccccchhHHHHHH
Q 013035 347 NLPKEIADYLNKMGARIPNVKPGKA-TIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGS 425 (451)
Q Consensus 347 ~~p~~iAe~Lkk~g~~IpGirpG~~-T~~yL~~~i~~~t~~Ga~~l~~la~~p~~~~~~~~~~~~~~~~~gtsllI~V~v 425 (451)
.+.+|+.+++++.|--..-.++.++ -...++..-..+.++ +.+.+++..+.+.+.. ....-.+++++.
T Consensus 34 Ls~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~p~~~i----L~~~a~ls~~~~~~~~-------~~iI~~iv~~~~ 102 (867)
T TIGR01524 34 LTNVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFNNPFIYI----LAMLMGVSYLTDDLEA-------TVIIALMVLASG 102 (867)
T ss_pred CCHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhHHHHH----HHHHHHHHHHHhhHHH-------HHHhhhHHHHHH
Confidence 3689999999999975543333222 234555544444322 3333333334443311 122335667778
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q 013035 426 IIELRRSYQAYNVMPSLSKAL 446 (451)
Q Consensus 426 ~~~~~~qi~~~~~~~~y~~~~ 446 (451)
++..+++.++....+++++..
T Consensus 103 ~i~~~~e~~a~ka~~~L~~l~ 123 (867)
T TIGR01524 103 LLGFIQESRAERAAYALKNMV 123 (867)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 888899988888777777654
No 26
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=20.83 E-value=3.7e+02 Score=32.05 Aligned_cols=89 Identities=22% Similarity=0.319 Sum_probs=53.9
Q ss_pred cChHHHHHHHHHcCCccccccCChhh-HHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHhhccCCccccccchhHHHHHH
Q 013035 347 NLPKEIADYLNKMGARIPNVKPGKAT-IEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGS 425 (451)
Q Consensus 347 ~~p~~iAe~Lkk~g~~IpGirpG~~T-~~yL~~~i~~~t~~Ga~~l~~la~~p~~~~~~~~~~~~~~~~~gtsllI~V~v 425 (451)
.+.+|+++++++.|.--.-.++.++. ...+++....+. +.+.+.+++..+++.+. .+ ...-.++++..
T Consensus 27 Ls~~ea~~rl~~~G~N~l~~~~~~s~~~~~l~q~~~~~~----~iL~~aails~~~~~~~----~~---~iIl~vv~in~ 95 (1053)
T TIGR01523 27 LTHDEAQHRLKEVGENRLEADSGIDAKAMLLHQVCNAMC----MVLIIAAAISFAMHDWI----EG---GVISAIIALNI 95 (1053)
T ss_pred CCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHhCHHH----HHHHHHHHHHHHHhhHH----HH---HHHHhHHHHHH
Confidence 36799999999999765444333333 335665554443 23333333433444331 11 22335667778
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q 013035 426 IIELRRSYQAYNVMPSLSKAL 446 (451)
Q Consensus 426 ~~~~~~qi~~~~~~~~y~~~~ 446 (451)
++..+++.+++..++++++..
T Consensus 96 ~i~~~QE~~aekal~aL~~l~ 116 (1053)
T TIGR01523 96 LIGFIQEYKAEKTMDSLKNLA 116 (1053)
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999887653
No 27
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=20.25 E-value=4.3e+02 Score=30.93 Aligned_cols=88 Identities=9% Similarity=0.153 Sum_probs=51.8
Q ss_pred ChHHHHHHHHHcCCccccccCChhh-HHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHhhccCCccccccchhHHHHHHH
Q 013035 348 LPKEIADYLNKMGARIPNVKPGKAT-IEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSI 426 (451)
Q Consensus 348 ~p~~iAe~Lkk~g~~IpGirpG~~T-~~yL~~~i~~~t~~Ga~~l~~la~~p~~~~~~~~~~~~~~~~~gtsllI~V~v~ 426 (451)
+.+|+++++++.|.-.--.++.++. ...++.....+.++ +.+.+++..+.+.+.. ......+++++..
T Consensus 69 s~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~l----L~~aa~ls~~~~~~~~-------a~~I~~iv~i~~~ 137 (902)
T PRK10517 69 NEAEVESAREQHGENELPAQKPLPWWVHLWVCYRNPFNIL----LTILGAISYATEDLFA-------AGVIALMVAISTL 137 (902)
T ss_pred CHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHH----HHHHHHHHHHHccHHH-------HHHHHHHHHHHHH
Confidence 6899999999999754333332223 33555555444322 2222333333343311 1233456777888
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q 013035 427 IELRRSYQAYNVMPSLSKAL 446 (451)
Q Consensus 427 ~~~~~qi~~~~~~~~y~~~~ 446 (451)
++.+++-++....+++++..
T Consensus 138 i~~~qe~ra~~~~~~L~~l~ 157 (902)
T PRK10517 138 LNFIQEARSTKAADALKAMV 157 (902)
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 89999999988888777654
Done!