Query 013035
Match_columns 451
No_of_seqs 119 out of 1070
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 02:59:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zjs_Y Preprotein translocase 100.0 2.3E-99 8E-104 782.3 40.7 416 19-449 5-431 (434)
2 3dl8_G Preprotein translocase 100.0 3E-100 9E-105 789.8 19.6 416 18-448 4-429 (429)
3 3din_C Preprotein translocase 100.0 4.2E-98 1E-102 773.0 18.3 408 18-448 4-424 (431)
4 3j01_A Preprotein translocase 100.0 1.3E-98 4E-103 777.6 13.8 409 25-449 9-429 (435)
5 1rh5_A Preprotein translocase 100.0 2.8E-95 1E-99 752.8 32.1 402 7-448 1-432 (436)
6 3mp7_A Preprotein translocase 100.0 2.3E-94 7.8E-99 753.6 19.6 410 5-448 2-465 (482)
7 2ww9_A SEC sixty-one protein h 100.0 3.1E-91 1.1E-95 731.2 20.5 406 1-441 1-475 (490)
8 2wwb_A Protein transport prote 100.0 1.2E-87 4.3E-92 702.5 28.8 396 4-438 3-466 (476)
9 2nsc_A Trigger factor, TF; cha 62.1 4.8 0.00016 32.9 2.9 30 351-381 30-59 (109)
10 1p9y_A Trigger factor, TF; alp 54.8 7.6 0.00026 32.4 2.9 29 353-382 35-63 (121)
11 2d3o_1 Trigger factor, TF; rib 47.7 6.2 0.00021 32.4 1.3 36 351-387 29-64 (112)
12 3mp7_A Preprotein translocase 22.5 96 0.0033 32.0 5.5 28 180-209 425-452 (482)
13 1t11_A Trigger factor, TF; hel 22.5 44 0.0015 33.4 2.9 22 360-381 41-62 (392)
14 1w26_A Trigger factor, TF; cha 21.5 46 0.0016 33.7 2.8 27 354-381 33-59 (432)
15 3gty_X Trigger factor, TF; cha 20.1 39 0.0013 34.3 1.9 23 360-382 38-60 (433)
No 1
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=100.00 E-value=2.3e-99 Score=782.25 Aligned_cols=416 Identities=26% Similarity=0.436 Sum_probs=339.9
Q ss_pred hhccccchhhHHHHHHHHHHHHHHHhCccccCCCccCCcchhhhhhhccCccc-hhhcc--cccccchhhhcCchhHHhH
Q 013035 19 AAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVD-ELGDF--GAELKLSFFQLGISPQIVA 95 (451)
Q Consensus 19 ~~~~~~~~~l~~kil~Tl~il~iy~lG~~IPlPGi~~~~~~~~~~~~~~~~~~-~l~~~--~~~~~~slfsLGI~PyItA 95 (451)
.++.++++|+|+|++||++++++||+|+|||+||+|.++.++. .+..+++++ +++.+ ||++|+|+|+|||+|||||
T Consensus 5 ~~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlPGi~~~~~~~~-~~~~~~~~~~~~~~fsGGa~~~~SifaLGI~PyItA 83 (434)
T 2zjs_Y 5 FWSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEF-LRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITA 83 (434)
T ss_dssp HHHHHSSHHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHHH-HHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHH
T ss_pred HHhHhcchhHHHHHHHHHHHHHHHHHhcccccCCcCHHHHHHH-HhcccccHHHHHHHHcccccccCcHHHHhhHHHHHH
Confidence 3457889999999999999999999999999999999876542 222223455 34444 3789999999999999999
Q ss_pred HHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc-cc-cccc--cchhHHHHHHHHHHH
Q 013035 96 SILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSL-PY-SI-YAAS--HSVKHVMVTAFLLVC 170 (451)
Q Consensus 96 sIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~-~~-~~-~~~~--~~~~~~~~ivl~Lva 170 (451)
||+||||+.++|.++|++||||+||||++++|||+|+++|++||++++.... .. +. ...+ ++..+.++++++|++
T Consensus 84 SII~QLL~~vip~l~~l~keGe~Gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vl~L~a 163 (434)
T 2zjs_Y 84 AIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVA 163 (434)
T ss_dssp HHHHHHHHHHSHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCccHHHHHHHHHHHHH
Confidence 9999999989999999999999999999999999999999999999975321 11 21 1123 344567789999999
Q ss_pred HHHHHHHHhhhhhccCCCcchHHHHHHHHhhHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhhcceEEee
Q 013035 171 GAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVK 250 (451)
Q Consensus 171 G~~il~wL~e~it~~GiGnG~SliI~~~I~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iv~~~~~~rrIP 250 (451)
|++++|||||+|||||+|||+|++|++||++++|+.+.+.++....++.++.. ++..+++.+++++.++++|+++||||
T Consensus 164 Gt~~lmwLgE~It~~GIGnGiSliI~~gIv~~lp~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~vi~~vV~~~~~~rrIP 242 (434)
T 2zjs_Y 164 GIALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLVA-FLFFLAFIVLAFAGMAAVQQAERRIP 242 (434)
T ss_dssp HHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHTHHHHHHHHHHTTTTTSSCHHH-HHHHHHHHHHHHHHHHHHHHCEEEEE
T ss_pred HHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhccCcccHHH-HHHHHHHHHHHHHHHHHheeeEEEEe
Confidence 99999999999999999999999999999999999998877654433223332 22334444555667899999999999
Q ss_pred EeeccccccccccCCCCCCCCCCccccccccCCcchHHHHHHHHHhHHHHHHHhC-CchHHHHHHHcCCCCCCCCcchHH
Q 013035 251 LQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILG-SPFWQHVKEILNPETSVGARPWVY 329 (451)
Q Consensus 251 i~~~~~~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiifassll~~p~~i~~~l~-~~~~~~~~~~l~~~~~~~~~~~i~ 329 (451)
+||+|+.. + ++.++++++|+|+|+|+||+||+|||||++++|+++++++. ++|.+++.++++|+ +|+|
T Consensus 243 vqyakr~~--g---r~~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~l~~~------~~~y 311 (434)
T 2zjs_Y 243 VQYARKVV--G---GRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQDNPVLQGIANFFNPT------RPSG 311 (434)
T ss_dssp EEECC------------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHCSS------SHHH
T ss_pred ehhhhhhc--c---CcccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHHHhccchHHHHHHHHcCCC------ChHH
Confidence 99997532 1 23456789999999999999999999999999999999664 44666677888875 4899
Q ss_pred HHHHHHHHHHHHHHHh--ccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHhhc
Q 013035 330 YTIYAFFVFLFNIFDI--ANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRR 407 (451)
Q Consensus 330 ~~iy~~~i~~Fs~f~~--~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~~~~~~~~~ 407 (451)
.++|++++++|||||. +.||||+||||||+|++|||+||||+|+|||+|+++|+|++||+|++++|++|++++.. .+
T Consensus 312 ~~~y~~lii~Fs~fyt~i~~np~diA~nLkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~l~~ia~lp~~l~~~-~~ 390 (434)
T 2zjs_Y 312 LFIEVLLVILFTYVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQNL-TG 390 (434)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHHHHHHTTTTTEECTTBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCccCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-cC
Confidence 9999999999999994 57999999999999999999999999999999999999999999999999999998654 22
Q ss_pred cCCccccccchhHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 013035 408 INEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRY 449 (451)
Q Consensus 408 ~~~~~~~~gtsllI~V~v~~~~~~qi~~~~~~~~y~~~~~~~ 449 (451)
+ .++.+||||+||+||+++|++||+|+++.+++|+++++|.
T Consensus 391 ~-~~~~~gGTslLI~VgV~ldt~~qi~s~~~~~~Y~~~~~~~ 431 (434)
T 2zjs_Y 391 I-HSIAFSGIGLLIVVGVALDTLRQVESQLMLRSYEGFLSRG 431 (434)
T ss_dssp C-CCGGGSSHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred c-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Confidence 2 1577899999999999999999999999999999999874
No 2
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=100.00 E-value=2.6e-100 Score=789.76 Aligned_cols=416 Identities=29% Similarity=0.524 Sum_probs=337.1
Q ss_pred hhhccccchhhHHHHHHHHHHHHHHHhCccccCCCccCCcchhhhhhhccCccchhhcc--cccccchhhhcCchhHHhH
Q 013035 18 NAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF--GAELKLSFFQLGISPQIVA 95 (451)
Q Consensus 18 ~~~~~~~~~~l~~kil~Tl~il~iy~lG~~IPlPGi~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~slfsLGI~PyItA 95 (451)
..++.++++|+|||++||++++++||+|+|||+||+|.++.++.+....++.+.+++.+ |+++|+|+|+|||+|||||
T Consensus 4 ~~~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlpGi~~~~~~~~~~~~~~~~~~~l~~~~GGa~~~~sifaLGI~PyItA 83 (429)
T 3dl8_G 4 YLKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSGGNLGRLTVFALGVMPYISA 83 (429)
T ss_dssp ----CCSCCCCHHHHHHHHHHHHHHHHHHHCSSCCCC---------------CCSSSSSSCCSSSCCCSSSSSHHHHHHH
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHhhhccccHHHHHHHHhCcccccccHHHHhhHHHHHH
Confidence 45678899999999999999999999999999999999876432211111234444444 4579999999999999999
Q ss_pred HHHHHHHHhHhhhHHHhhh-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cccccccchhHHHHHHHHHH
Q 013035 96 SILMQVLCHIVPSLVQLRK-EGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPY-----SIYAASHSVKHVMVTAFLLV 169 (451)
Q Consensus 96 sIi~Qll~~~~p~l~~l~~-~g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~~~-----~~~~~~~~~~~~~~ivl~Lv 169 (451)
||+|||++..+|+++|++| |||+||||++++|||+|+++|++||.+++...... .....+++....++++++|+
T Consensus 84 sII~QLL~~~~P~l~~l~k~ege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~ 163 (429)
T 3dl8_G 84 SIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLV 163 (429)
T ss_dssp HHHHHHHHHHSSCSSSCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCCSSSTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999999986533210 01112344557789999999
Q ss_pred HHHHHHHHHhhhhhccCCCcchHHHHHHHHhhHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhhcceEEe
Q 013035 170 CGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKV 249 (451)
Q Consensus 170 aG~~il~wL~e~it~~GiGnG~SliI~~~I~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iv~~~~~~rrI 249 (451)
+|++++|||||+|||||+|||+|++|++||++++|+++.+......+++.++.+. +..+++.+++++.++++|++||||
T Consensus 164 aGt~~lmwL~E~It~~GiGnGiSliI~~gI~~~lp~~~~~~~~~~~~g~~~~~~~-l~~l~~~l~vi~~vV~~~~~~rrI 242 (429)
T 3dl8_G 164 AGTMFLVWIADRITEKGIGNGASLIIFAGIVANFPNAVIQFYEKVKTGDIGPLTL-LLIIALIIAIIVGIVYVQEAERRI 242 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHTTTTSSCCCCSSSCSSSCTHHH-HHHHHHHHHHHHHHTCSCCCCCCC
T ss_pred HHHHHHHHHHHHHhhcCcCcchHHHHHHHHHHHHHHHHHhHHHHhcCCcchHHHH-HHHHHHHHHHHHHHHHheeeEEEE
Confidence 9999999999999999999999999999999999998765432222122233332 233444455566789999999999
Q ss_pred eEeeccccccccccCCCCCCCCCCccccccccCCcchHHHHHHHHHhHHHHHHHhCCchHHHHHHHcCCCCCCCCcchHH
Q 013035 250 KLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVY 329 (451)
Q Consensus 250 Pi~~~~~~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiifassll~~p~~i~~~l~~~~~~~~~~~l~~~~~~~~~~~i~ 329 (451)
|+||+|+.. .++.++++++|+|+|+|+||+||+|||+|++++|++++++++++|..++.++++|+ .|+|
T Consensus 243 Pvqyakr~~-----g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~l~~~------~~~y 311 (429)
T 3dl8_G 243 PIQYPGRQV-----GRQLYAGRKTYLPIKINPAGVIPIIFAQALLLIPSTLLNFVQNPFIKVIADMFQPG------AIFY 311 (429)
T ss_dssp CCBCSSSCB-----CCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHHHSCSSCCCCTTTTTTTTT------HHHH
T ss_pred EEEEchhhc-----cccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHcchHHHHHHHHHcCCC------chHH
Confidence 999997532 12356788999999999999999999999999999999987655655555666654 4899
Q ss_pred HHHHHHHHHHHHHHHh--ccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHhhc
Q 013035 330 YTIYAFFVFLFNIFDI--ANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRR 407 (451)
Q Consensus 330 ~~iy~~~i~~Fs~f~~--~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~~~~~~~~~ 407 (451)
.++|++++++|||||. +.||||+||||||+|++|||+||||+|+|||+|+++|+|++||+|++++|++|++++...
T Consensus 312 ~~~y~~lii~Fs~fy~~i~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~~~~~~-- 389 (429)
T 3dl8_G 312 NFLYVTFIVFFTYFYTAVLINPVELAENLHKAGAFIPGVRPGQDTVKYLERIINRLIFFGALFLSVIALIPILISVWF-- 389 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCTTHHHHHHHTCCCCBSSSBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--
Confidence 9999999999999995 468999999999999999999999999999999999999999999999999999987532
Q ss_pred cCCccccccchhHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 013035 408 INEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRR 448 (451)
Q Consensus 408 ~~~~~~~~gtsllI~V~v~~~~~~qi~~~~~~~~y~~~~~~ 448 (451)
+.++.+||||+||+||+++|++||+|+++.++||++|++|
T Consensus 390 -g~~~~~gGTslLI~Vgv~l~~~~qi~s~l~~~~Y~g~~~~ 429 (429)
T 3dl8_G 390 -NIPFYFGGTTALIVVGVALDTFRQIETYLIQKKYKSYVRR 429 (429)
T ss_dssp -CCSCCCSTHHHHHHHHHHHHHHHHHHHHCCCCCTTCSCC-
T ss_pred -CCCccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3346689999999999999999999999999999999875
No 3
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=4.2e-98 Score=772.96 Aligned_cols=408 Identities=25% Similarity=0.483 Sum_probs=330.7
Q ss_pred hhhccccchhhHHHHHHHHHHHHHHHhCccccCCCccCCcchhhhhhh---c--cCccchhhcc--cccccchhhhcCch
Q 013035 18 NAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSF---V--SGSVDELGDF--GAELKLSFFQLGIS 90 (451)
Q Consensus 18 ~~~~~~~~~~l~~kil~Tl~il~iy~lG~~IPlPGi~~~~~~~~~~~~---~--~~~~~~l~~~--~~~~~~slfsLGI~ 90 (451)
.+++.++++|+|+|++||++++++||+|+|||+||+|.+++++.+.+. . .+.+.+++.+ ||++++|+|+|||+
T Consensus 4 ~~~~~~~~~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Ggal~~~SifaLGI~ 83 (431)
T 3din_C 4 AFKNAFKIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAWGEIFRRIAETAGVAGILSFYDVFTGGALSRFSVFTMSVT 83 (431)
T ss_dssp ----CCSCSCCSSHHHHHHHHHHHHHHHHSCSSCCCCC--------------------CTTHHHHCSSSSCCCSSSSSHH
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHHhhhccccccccHHHHHHHHcCcccccccHHHHhhH
Confidence 456788999999999999999999999999999999998764322110 1 1234444444 45699999999999
Q ss_pred hHHhHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---ccccccc-hhHHHHHHH
Q 013035 91 PQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYS---IYAASHS-VKHVMVTAF 166 (451)
Q Consensus 91 PyItAsIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~~~~---~~~~~~~-~~~~~~ivl 166 (451)
|||||||+|||++..+|+++|++||||+||||++++|||+|+++|++||.+++.... ++ ....+++ ....+++++
T Consensus 84 PyItAsII~QLL~~~iP~l~~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vl 162 (431)
T 3din_C 84 PYITASIILQLLASVMPSLKEMLREGEEGRKKFAKYTRRLTLLIGGFQAFFVSFSLA-RSNPDMVAPGVNVLQFTVLSTM 162 (431)
T ss_dssp HHHHHHHHHHHHHHHSCSSSSCSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCSSCCCCCCCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCccccccCCchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999865322 21 1101233 457889999
Q ss_pred HHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHhhHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhhcce
Q 013035 167 LLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGC 246 (451)
Q Consensus 167 ~LvaG~~il~wL~e~it~~GiGnG~SliI~~~I~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iv~~~~~~ 246 (451)
+|++|++++|||||+|||||+|||+|++|++||++++|+++.+... ++.++.+. +..+++.+++++.++++|+++
T Consensus 163 ~L~aGt~~lmwL~E~It~~GiGnGiSliI~~gI~~~lp~~~~~~~~----~~~~~~~~-l~~l~~~l~vi~~vV~~~~~~ 237 (431)
T 3din_C 163 SMLAGTMFLLWLGERITEKGIGNGISILIFAGIVARYPSYIRQAYL----GGLNLLEW-IFLIAVALITIFGIILVQQAE 237 (431)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHHSTTSSSCCSS----CCSCTHHH-HHHHHHHHHHHHHHTTTCCBC
T ss_pred HHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHhc----ccccHHHH-HHHHHHHHHHHHHHHhheeeE
Confidence 9999999999999999999999999999999999999998754321 22233333 333444455566789999999
Q ss_pred EEeeEeeccccccccccCCCCCCCCCCccccccccCCcchHHHHHHHHHhHHHHHHHhCCchHHHHHHHcCCCCCCCCcc
Q 013035 247 RKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARP 326 (451)
Q Consensus 247 rrIPi~~~~~~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiifassll~~p~~i~~~l~~~~~~~~~~~l~~~~~~~~~~ 326 (451)
||||+||+|+.. + ++.++++++|+|+|+|+||+||+|||+|++++|+++++++++.|. .++++|. .
T Consensus 238 rrIPvqyakr~~--g---~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~~~---~~~~~~~------~ 303 (431)
T 3din_C 238 RRITIQYARRVT--G---RRVYGGASTYLPIKVNQGGVIPIIFASAIVSIPSAIASITNNETL---KNLFRAG------G 303 (431)
T ss_dssp CCCCCCBTTTBC--C---CCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHTTSSTTCCC---CCCSSTT------H
T ss_pred EEEEEEechhhc--c---ccccCCCcceeeeeecccCchHHHHHHHHHHHHHHHHHHcchHHH---HHHcCCC------c
Confidence 999999997642 1 234678899999999999999999999999999999887643221 1233332 4
Q ss_pred hHHHHHHHHHHHHHHHHHh--ccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHH
Q 013035 327 WVYYTIYAFFVFLFNIFDI--ANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHY 404 (451)
Q Consensus 327 ~i~~~iy~~~i~~Fs~f~~--~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~~~~~~ 404 (451)
|+|.++|++++++|||||. +.||||+||||||+|++|||+||||+|+|||+|+++|+|++||+|++++|++|++++..
T Consensus 304 ~~y~~~y~~lii~Fs~fy~~i~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~~~~~ 383 (431)
T 3din_C 304 FLYLLIYGLLVFFFTYFYSVVIFDPREISENIRKYGGYIPGLRPGRSTEQYLHRVLNRVTFIGAVFLVVIALLPYLVQGA 383 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTHHHHHTTSCCCCBCSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 7899999999999999995 46899999999999999999999999999999999999999999999999999998753
Q ss_pred hhccCCccccccchhHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 013035 405 LRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRR 448 (451)
Q Consensus 405 ~~~~~~~~~~~gtsllI~V~v~~~~~~qi~~~~~~~~y~~~~~~ 448 (451)
. +.++.+||||+||+||+++|++||+|+++.++||++|++|
T Consensus 384 ~---g~~~~~gGTslLI~Vgv~l~~~~qi~s~~~~~~Y~g~~~~ 424 (431)
T 3din_C 384 I---KVNVWIGGTSALIAVGVALDIIQQMETHMVMRHYEGFIKK 424 (431)
T ss_dssp S---CCSCCTTHHHHHHHHHHHHHHHHHHHHHCCCCCSSTTCC-
T ss_pred h---CCCccccchhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 2 2336689999999999999999999999999999999975
No 4
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Probab=100.00 E-value=1.3e-98 Score=777.58 Aligned_cols=409 Identities=27% Similarity=0.474 Sum_probs=335.6
Q ss_pred chhhHHHHHHHHHHHHHHHhCccccCCCccCCcchhhhhhhccCccch-hhcc--cccccchhhhcCchhHHhHHHHHHH
Q 013035 25 KSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDE-LGDF--GAELKLSFFQLGISPQIVASILMQV 101 (451)
Q Consensus 25 ~~~l~~kil~Tl~il~iy~lG~~IPlPGi~~~~~~~~~~~~~~~~~~~-l~~~--~~~~~~slfsLGI~PyItAsIi~Ql 101 (451)
.+|+|||++||++++++||+|+|||+||+|.++.++.+ +..++++.. ++.+ ||++++|+|+|||+|||||||+|||
T Consensus 9 ~~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~-~~~~~~~~~~~~~fsGGal~~~SifaLGI~PyItAsII~QL 87 (435)
T 3j01_A 9 LGELKRRLLFVIGALIVFRIGSFIPIPGIDAAVLAKLL-EQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQL 87 (435)
T ss_dssp SCSSSHHHHHHHTHHHHHHHHHSCSTTCCSSSSCCSSC-SCSCSCCSSSHHHHTCCSSSCCCCSSCCSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHH-hhccccHHHHHHHHcccccccccHHHHchHHHHHHHHHHHH
Confidence 48999999999999999999999999999998764322 211223333 3334 4579999999999999999999999
Q ss_pred HHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c--cccccccchhHHHHHHHHHHHHHHHHHHH
Q 013035 102 LCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLP-Y--SIYAASHSVKHVMVTAFLLVCGAMTMSWI 178 (451)
Q Consensus 102 l~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~~-~--~~~~~~~~~~~~~~ivl~LvaG~~il~wL 178 (451)
|+.++|+++|++||||+||||++++|||+|+++|++||.+++..... + .....+++....++++++|++|++++|||
T Consensus 88 L~~~ip~l~~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGt~~lmwL 167 (435)
T 3j01_A 88 LTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWL 167 (435)
T ss_dssp HHHHCSSSSSCSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSCCCSCCCCSCSCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHhcccHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998753321 0 01112334445678899999999999999
Q ss_pred hhhhhccCCCcchHHHHHHHHhhHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhhcceEEeeEeeccccc
Q 013035 179 CDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKL 258 (451)
Q Consensus 179 ~e~it~~GiGnG~SliI~~~I~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iv~~~~~~rrIPi~~~~~~~ 258 (451)
||+|||||+|||+|++|++||++++|+++.+.++..+.+..++.. .+..++++++++++++++|++||||||||+|+..
T Consensus 168 ~E~It~~GiGnGiSLiI~~gI~~~lp~~~~~~~~~~~~~~~~~~~-~l~~~~~~l~vi~~vV~~~~~~rrIPvqyakr~~ 246 (435)
T 3j01_A 168 GEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFLV-LLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQ 246 (435)
T ss_dssp HHHSTTSCCSSSHHHHHHHHHHHHSSTTSSSCCCSSSSTTSSSHH-HHHHHHHHHHHHHHTTCCCCCSCCCCCCCCCCCS
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHhheeEEEEEEEehhhhc
Confidence 999999999999999999999999999875543222222222222 2333444455566788999999999999997542
Q ss_pred cccccCCCCCCCCCCccccccccCCcchHHHHHHHHHhHHHHHHHhCC----chHHHHHHHcCCCCCCCCcchHHHHHHH
Q 013035 259 ASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGS----PFWQHVKEILNPETSVGARPWVYYTIYA 334 (451)
Q Consensus 259 ~~~~~~~~~~~~~~~ylPiKln~aGvmPiifassll~~p~~i~~~l~~----~~~~~~~~~l~~~~~~~~~~~i~~~iy~ 334 (451)
+++.++++++|+|+|+|+||+||+|||+|++++|+++++++.+ .|..++.++++|+ .|+|.++|+
T Consensus 247 -----g~~~~~g~~s~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~y~ 315 (435)
T 3j01_A 247 -----GRRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPG------QPLYVLLYA 315 (435)
T ss_dssp -----SCCCCCCCCCCCSCCCCCSSCSCSSHHHHHHHHHHHHHHHSSSCCCSSCCSSSSCCCCSS------GGGGTHHHH
T ss_pred -----cccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHHcCCC------CcHHHHHHH
Confidence 1235677899999999999999999999999999999997632 2433334444443 478999999
Q ss_pred HHHHHHHHHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 013035 335 FFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGF 412 (451)
Q Consensus 335 ~~i~~Fs~f~--~~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~~~~~~~~~~~~~~ 412 (451)
+++++||||| +..||||+||||||+|++|||+|||++|+|||+|+++|+|++||+|++++|++|++++... +.++
T Consensus 316 ~lii~F~~fyt~i~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlP~~l~~~~---~~~~ 392 (435)
T 3j01_A 316 SAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMRDAM---KVPF 392 (435)
T ss_dssp HHHHHHHHHHHHHSSCTTHHHHHTTSTTCSSSCCSSSSSSCSHHHHHHHHHCHHHHHHHHHHHHHHHHTTSCC---SSSS
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCe
Confidence 9999999999 4579999999999999999999999999999999999999999999999999999987532 2345
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 013035 413 SIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRY 449 (451)
Q Consensus 413 ~~~gtsllI~V~v~~~~~~qi~~~~~~~~y~~~~~~~ 449 (451)
.+||||+||+||+++|++||+|+++.++||++|++|-
T Consensus 393 ~~gGTslLI~VgV~ldt~~qi~s~l~~~~Y~g~~~~~ 429 (435)
T 3j01_A 393 YFGGTSLLIVVVVIMDFMAQVQTLMMSSQYESALKKA 429 (435)
T ss_dssp SSCCHHHHHTHHHHHHHHHHHHHHTSCCCCCCSCSCC
T ss_pred ecccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6899999999999999999999999999999999863
No 5
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Probab=100.00 E-value=2.8e-95 Score=752.82 Aligned_cols=402 Identities=15% Similarity=0.172 Sum_probs=318.5
Q ss_pred hhhhh-hHHhhhhhhccccchhhHHHHHHHHHHHHHHHhCccccCCCccCCcchhhhhhhccCccchhhcccccccchhh
Q 013035 7 LNFIR-LSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFF 85 (451)
Q Consensus 7 ~~~~~-~~~~~p~~~~~~~~~~l~~kil~Tl~il~iy~lG~~IPlPGi~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slf 85 (451)
+|+.| +.+.+||+++|++++|+|+|++||++++++||+|+|||+||+|.++.+ .+.+++.++|++|+|+|
T Consensus 1 ~~~~~p~~~~lP~v~~p~~~~~lr~kil~Tl~~L~iyr~gs~IPlpGi~~~~~~---------~~~~~~~~~a~~~~sif 71 (436)
T 1rh5_A 1 MKKLIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIPA---------IFEFWQTITASRIGTLI 71 (436)
T ss_dssp -CTTHHHHHHSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCCS---------CCTTHHHHHTCCTTBTT
T ss_pred CchhhHHHHhCCCCCCCCcCccHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH---------HHHHHHHhhccccchHH
Confidence 46666 599999999999999999999999999999999999999999997642 33445556688999999
Q ss_pred hcCchhHHhHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHH
Q 013035 86 QLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTA 165 (451)
Q Consensus 86 sLGI~PyItAsIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~~~~~~~~~~~~~~~~~iv 165 (451)
+|||+|||||||+||||++. ++.+++||||+||+|+|++|||+|+++|++||++++..+ .+ .+++..+.++++
T Consensus 72 aLGI~PyItAsII~QLL~g~--~~i~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~g-~~----~~~~~~~~~~~v 144 (436)
T 1rh5_A 72 TLGIGPIVTAGIIMQLLVGS--GIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAG-AF----GILTPLLAFLVI 144 (436)
T ss_dssp TTTTHHHHHHHHHHHHHHHH--TTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS----CCCCHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHHhhC--ceeeecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc----cCCchHHHHHHH
Confidence 99999999999999999754 444889999999999999999999999999999987531 12 123445677899
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHhhHHHHHHHH-------HHHHhhcCCcchHHHHHHHHHHHHHHHHH
Q 013035 166 FLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYK-------MLSQLLGSSVRWWPFMLGLLGVFTIVTMW 238 (451)
Q Consensus 166 l~LvaG~~il~wL~e~it~~GiGnG~SliI~~~I~~~lp~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 238 (451)
++|++|++++|||||+|||||+|||+|++|++|||+++|+++.+ .++...++..++.. +..+++.+++++.
T Consensus 145 l~L~~Gt~~lmwL~E~It~~GiGnGiSLiI~~gI~~~lp~~~~~~~G~i~~~~~~~~~~~~~~~~--l~~l~~~l~v~~~ 222 (436)
T 1rh5_A 145 IQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEY--IAPIIGTIIVFLM 222 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHTTTTCCCGGG--THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHHHhcccchHHHHHHHHhcccchHHH--HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887 65544332222221 2233344455667
Q ss_pred HHHhhcceEEeeEeeccccccccccCCCCCCCCCCccccccccCCcchHHHHHHHHHhHHHHHHHhC---CchH------
Q 013035 239 AVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILG---SPFW------ 309 (451)
Q Consensus 239 iv~~~~~~rrIPi~~~~~~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiifassll~~p~~i~~~l~---~~~~------ 309 (451)
++++|+++||||+||+|. +++++|+|+|+|++|+||+||||+++++|++++++++ .+|.
T Consensus 223 vV~~~~~~rrIPvqyak~------------~g~~~~lPlKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~g~~~~~ 290 (436)
T 1rh5_A 223 VVYAECMRVEIPLAHGRI------------KGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGG 290 (436)
T ss_dssp HHHHTTCEEEEECCCSSS------------TTCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCBCSS
T ss_pred HHhhcceEEEEEEEeccc------------CCccceeeeecccccchHHHHHHHHHHHHHHHHHHhcccCcchhhhcccc
Confidence 899999999999999962 3578999999999999999999999999999999863 1232
Q ss_pred ---HHHHHHcCCCCCCC----C-cc-hHHHHHHHHHHHHHHHHH--h-ccChHHHHHHHHHcCCccccccCChh-hHHHH
Q 013035 310 ---QHVKEILNPETSVG----A-RP-WVYYTIYAFFVFLFNIFD--I-ANLPKEIADYLNKMGARIPNVKPGKA-TIEYL 376 (451)
Q Consensus 310 ---~~~~~~l~~~~~~~----~-~~-~i~~~iy~~~i~~Fs~f~--~-~~~p~~iAe~Lkk~g~~IpGirpG~~-T~~yL 376 (451)
+++.+|++|+.+.. + .+ ++|.++|++++++||||| + ..||||+||||||||++|||+|||++ |+|||
T Consensus 291 ~~~~gl~yyl~pp~~~~~~~~~p~~~~~y~~~~~~lii~Fs~fy~~is~~np~diA~~Lkk~G~~IpGiRpG~~tt~~yL 370 (436)
T 1rh5_A 291 RAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRL 370 (436)
T ss_dssp SBSSSTTGGGCCCCSSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHH
T ss_pred cccccchhhcCChhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHCCCcCCCcCCCchhHHHHH
Confidence 24567777754221 1 12 689999999999999999 4 46999999999999999999999999 79999
Q ss_pred HHhhhhHHhHHHHHHHHHHHHHHHHHHHhhccCCccccccchhHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 013035 377 TKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRR 448 (451)
Q Consensus 377 ~~~i~~~t~~Ga~~l~~la~~p~~~~~~~~~~~~~~~~~gtsllI~V~v~~~~~~qi~~~~~~~~y~~~~~~ 448 (451)
+|+++|+|++||+|++++|++|++++. ++ ||||+||+||+++|++||+++++.+++|. ++||
T Consensus 371 ~~vi~rit~~Ga~~l~~ia~lp~~l~~----~~-----gGTslLI~VgV~~~~~~qi~~~~~~~~Y~-~l~~ 432 (436)
T 1rh5_A 371 KRYIPPLTVMSSAFVGFLATIANFIGA----LG-----GGTGVLLTVSIVYRMYEQLLRERTSELHP-AIAK 432 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC----TT-----CSHHHHHHHHHHHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----hc-----CchhhhhHHHHHHHHHHHHHHHHHHHhhH-HHHH
Confidence 999999999999999999999998752 12 89999999999999999999999999998 6665
No 6
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=100.00 E-value=2.3e-94 Score=753.59 Aligned_cols=410 Identities=18% Similarity=0.231 Sum_probs=270.3
Q ss_pred chhhhhhh-HHhhhhhhccccchhhHHHHHHHHHHHHHHHhCccccCCCccCCcchhhhhhhccCccchhhcccccccch
Q 013035 5 RFLNFIRL-SSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLS 83 (451)
Q Consensus 5 ~~~~~~~~-~~~~p~~~~~~~~~~l~~kil~Tl~il~iy~lG~~IPlPGi~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s 83 (451)
+++|+.|+ .+.+||+++|++++|+|+|++||++++++||+|++||+||+|.+.. +.+.+++.++|.+++|
T Consensus 2 ~~~~~~~p~~~~lP~v~~P~~~~~lr~Kil~Tl~~L~iyrlgs~IPlpGi~~~~~---------~~~~~l~~~~Gg~~~S 72 (482)
T 3mp7_A 2 GARDIIYALERWFPEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGIPERIQ---------DYFQFLRVVLAGRNGS 72 (482)
T ss_dssp ------------------------CTTTHHHHHHHHHHHHHHHHSBCTTCCSSCC---------CSCSSTTTTTCSCTTB
T ss_pred CHHHHHHHHHhhCCCccCccccccHHHHHHHHHHHHHHHHHHhhCCCCCcCcccc---------cHHHHHHHhcCCCccc
Confidence 47888885 9999999999999999999999999999999999999999998743 1444555565557999
Q ss_pred hhhcCchhHHhHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHH
Q 013035 84 FFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMV 163 (451)
Q Consensus 84 lfsLGI~PyItAsIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~~~~~~~~~~~~~~~~~ 163 (451)
+|+|||+|||||||+||||+.. +++++|||+|+||||+|++|||+|+++|++||.+++. ...++.....++....++
T Consensus 73 ifaLGI~PyITASII~QLL~~~--~l~~l~kege~gR~k~~~~tR~lti~la~iQa~~~v~-~~~~~~~~~~~~~~~~~~ 149 (482)
T 3mp7_A 73 ILTLGIGPIVTAGIILQLLVGS--EIIKLDLANPEDRRFYQALQRVFSVFMCFFEAAVWIL-GGAFGRVGVDVTYAIAVL 149 (482)
T ss_dssp TTSSTTHHHHHHHHHTTC-------------------------CHHHHHHHHHHHHHHHHH-SSSSSCC------CTHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHhc--cHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccccccccchHHHHH
Confidence 9999999999999999999986 9999999999999999999999999999999999974 333321100122345778
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHhhHHHHHHHHHHHHhhc--------CCcchHHH-----------
Q 013035 164 TAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLG--------SSVRWWPF----------- 224 (451)
Q Consensus 164 ivl~LvaG~~il~wL~e~it~~GiGnG~SliI~~~I~~~lp~~~~~~~~~~~~--------~~~~~~~~----------- 224 (451)
++++|++|++++|||||+|||||+|||+|++|++|||+++|+++.+......+ +..+..+.
T Consensus 150 ivl~L~aGt~~lmwL~E~It~~GiGnGiSLiI~agI~~~lp~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~~~l~ 229 (482)
T 3mp7_A 150 MILQLAMGGIVLIILDELVSKWGIGSGISLFIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGDLW 229 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHSCCCCCCC---CCSSSCCCSCHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchHHHHHHHHhcchhh
Confidence 99999999999999999999999999999999999999999997653211000 00111111
Q ss_pred ----------HHHHHHHHHHHHHHHHHhhcceEEeeEeeccccccccccCCCCCCCCCCccccccccCCcchHHHHHHHH
Q 013035 225 ----------MLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLL 294 (451)
Q Consensus 225 ----------~~~~~~i~~~~~~~iv~~~~~~rrIPi~~~~~~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiifassll 294 (451)
.+..+++.+++++.++|+|+++||||+||+|++ +++|+|+|+|+||+||+|||||++
T Consensus 230 ~~~~~~lp~~~l~~l~~~l~v~~~vV~~q~~~rrIPvqyak~~-------------~~~~iPiKln~aGviPiIfassll 296 (482)
T 3mp7_A 230 GAIYRGGSAPDMLSVVATIVVFFIVVYFESMRVEIPLGYRGVT-------------VRGSYPIRFLYVSNIPIILTFALY 296 (482)
T ss_dssp SSCCCSSSSCCHHHHHHHHHHHHHHHHHHHCCEEC-------------------------CEECSSSSTTHHHHHHHHHH
T ss_pred HHHhhccchhHHHHHHHHHHHHHHhheeEeeEEEEEEEecccc-------------ccceeeEeecccCchHHHHHHHHH
Confidence 022233444456678999999999999998631 469999999999999999999999
Q ss_pred HhHHHHHHHhCC---chH-----------HHHHHHcCCCCCCCC--cc----hHHHHHHHHHHHHHHHHH--h-ccChHH
Q 013035 295 AFPSILASILGS---PFW-----------QHVKEILNPETSVGA--RP----WVYYTIYAFFVFLFNIFD--I-ANLPKE 351 (451)
Q Consensus 295 ~~p~~i~~~l~~---~~~-----------~~~~~~l~~~~~~~~--~~----~i~~~iy~~~i~~Fs~f~--~-~~~p~~ 351 (451)
++|+++++++.+ +|. +++.+|++|+.+..+ .+ ++|.++|++++++||||| + ..||||
T Consensus 297 ~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~g~~~~l~p~~s~~~~~~~p~~~~~Y~~~~~~lii~Fs~fy~~is~~np~d 376 (482)
T 3mp7_A 297 ANIQLWARVLDRLGHPWLGRFDPTTGSPISGFVLYVIPPRNIFSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARS 376 (482)
T ss_dssp HHHHHHHHHHHTTSCCSSBCCCCTTSCCCCBSGGGSCCCSSSTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHSSTTGGG
T ss_pred HHHHHHHHHhhhccchhhhhhcccccccchhHHHHhCCcccHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 999999987632 121 234567777654421 11 368899999999999999 4 468999
Q ss_pred HHHHHHHcCCccccccCChh-hHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHhhccCCccccccchhHHHHHHHHHHH
Q 013035 352 IADYLNKMGARIPNVKPGKA-TIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELR 430 (451)
Q Consensus 352 iAe~Lkk~g~~IpGirpG~~-T~~yL~~~i~~~t~~Ga~~l~~la~~p~~~~~~~~~~~~~~~~~gtsllI~V~v~~~~~ 430 (451)
+||||||||++|||+||||+ |+|||+|+++|+|++||+|++++|++|++++.. + ||||+||+||+++|++
T Consensus 377 iA~nlkk~G~~IpGiRpG~~tt~~yL~~vi~rit~~Ga~~L~~iavlp~~l~~~----g-----gGTslLI~VgV~~~~~ 447 (482)
T 3mp7_A 377 IARQLQRAGLQIPGFRRDPRTLEKVLQRYIPYVTFWGSLTVALIAVLADFLGAL----G-----TGTGILLTVGILYRFY 447 (482)
T ss_dssp CCC--------CCTTTTTTSTTCC------CTHHHHHHHHHHHHHHHHHHHTCS----S-----CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccCCcCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc----C-----CceeeeeeHHHHHHHH
Confidence 99999999999999999997 799999999999999999999999999998631 2 8999999999999999
Q ss_pred HHHHHHHhhHHHHHHHhh
Q 013035 431 RSYQAYNVMPSLSKALRR 448 (451)
Q Consensus 431 ~qi~~~~~~~~y~~~~~~ 448 (451)
||+++++.+++|+.+-+.
T Consensus 448 ~qi~s~~~~~~Y~~l~~~ 465 (482)
T 3mp7_A 448 EEIAREQITEMFPALRKL 465 (482)
T ss_dssp HHHHHHHHHHSHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHH
Confidence 999999999999965443
No 7
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=100.00 E-value=3.1e-91 Score=731.19 Aligned_cols=406 Identities=14% Similarity=0.172 Sum_probs=331.8
Q ss_pred Ccccchhhhhhh-HHhhhhhhccccchhhHHHHHHHHHHHHHHHhCccccCCCccCCcchhhhhhhccCccchhhccccc
Q 013035 1 MYKNRFLNFIRL-SSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAE 79 (451)
Q Consensus 1 ~~~~~~~~~~~~-~~~~p~~~~~~~~~~l~~kil~Tl~il~iy~lG~~IPlPGi~~~~~~~~~~~~~~~~~~~l~~~~~~ 79 (451)
|--.|++|+.|+ .+.+||+++|.+++|+|+|++||++++++||+ +|||+||+|.++.. +. .+.+.+++.++|+
T Consensus 1 ~~~~~~~~~~~p~~~~lPev~~P~~~~~lr~Kil~Tl~~L~iyri-s~IPlpGi~~~~~~----~~-~~~~~~~~~~~a~ 74 (490)
T 2ww9_A 1 MSGFRLIDIVKPILPILPEVELPFEKLPFDDKIVYTIFAGLIYLF-AQFPLVGLPKATTP----NV-NDPIYFLRGVFGC 74 (490)
T ss_dssp CCCSCCCCCCCSSGGGSCCCCCCCCCCCSHHHHHHHHHHHHHTTC-CSSCCSCHHHHTTT----CS-SCCCTTTHHHHTC
T ss_pred CccchHHHHHHHHHHhCCcccCCCCCccHHHHHHHHHHHHHHHHH-HhcCCCCcCHHHHh----cc-cCHHHHHHHHHcc
Confidence 345799999995 99999999999999999999999999999999 99999999987541 11 2356666666788
Q ss_pred ccchhhhcCchhHHhHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchh
Q 013035 80 LKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVK 159 (451)
Q Consensus 80 ~~~slfsLGI~PyItAsIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~~~~~~~~~~~~~ 159 (451)
+++|+|+|||+|||||||+||||++. ++.+++||||+||||+|++|||+|+++|++||++++... .++ .+.+..
T Consensus 75 ~~~sifaLGI~PyItASII~QLL~g~--~iipl~kege~gR~k~~~~tR~lti~la~iQa~~~~~~~-~~~---~~~~~~ 148 (490)
T 2ww9_A 75 EPRTLLEFGLFPNISSGLILQLLAGL--KVIKVNFKIQSDRELFQSLTKVFAIVQYVILTNIFIFAG-YFG---DDLSVV 148 (490)
T ss_dssp CSSSTTSSTTHHHHHHHHHHHHHHHH--TSSCCCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSS---CCCSTT
T ss_pred cccHHHHHhhHHHHHHHHHHHHHhhC--ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc---CCccHH
Confidence 99999999999999999999999653 333389999999999999999999999999999987532 332 234445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc-cCCCcchHHHHHHHHhhHHHHHHH--------------------HHHHHh--hc
Q 013035 160 HVMVTAFLLVCGAMTMSWICDTISE-SGFGQGSSLIICVGILTGYTETLY--------------------KMLSQL--LG 216 (451)
Q Consensus 160 ~~~~ivl~LvaG~~il~wL~e~it~-~GiGnG~SliI~~~I~~~lp~~~~--------------------~~~~~~--~~ 216 (451)
..++++++|++|++++|||||+||| ||+|||+|++|++|||+++|++++ +.++.. ..
T Consensus 149 ~~~~ivl~L~~Gt~~lmwLgE~It~G~GIGnGiSLiI~agI~~~lp~~~~s~~~~~~~~~~~~e~~G~~~~~~~~~~~~~ 228 (490)
T 2ww9_A 149 QIGLINFQLVGAGIFTTLLAEVIDKGFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKH 228 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSSCHHHHHHHHHHHHHHHHHHTCCCCCCCCSSCCCSCCCHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcccccHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHhhcc
Confidence 6778999999999999999999999 999999999999999999999876 333333 11
Q ss_pred ----CCc-c-hH----HHHHHHHHHHHHHHHHHHHhhcceEEeeEeeccccccccccCCCCCCCCCCccccccccCCcch
Q 013035 217 ----SSV-R-WW----PFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQP 286 (451)
Q Consensus 217 ----~~~-~-~~----~~~~~~~~i~~~~~~~iv~~~~~~rrIPi~~~~~~~~~~~~~~~~~~~~~~ylPiKln~aGvmP 286 (451)
+.. + +. +. +..+++.+++++.++|+|+++|||||||+|+ +++++|+|+|+|++|+||
T Consensus 229 ~~~~~~l~~~~~r~~lp~-l~~l~~~l~vi~~vV~~q~~~rrIPIqyak~------------~g~~s~lPlKln~aGviP 295 (490)
T 2ww9_A 229 KTFIGGIISAFNRDYLPN-LTTTIIVLAIAIIVCYLQSVRVELPIRSTRA------------RGTNNVYPIKLLYTGCLS 295 (490)
T ss_dssp SSCCCSCCCCCSSSSCCS-HHHHHHHHHHHHHHHHHTTCCEECCCBCSSS------------SSBCCCCEECHHHHTHHH
T ss_pred cccccchhhHHhhccccH-HHHHHHHHHHHHHHheeeeeEEEEEEEEccc------------CCcCceeeeEeccccchH
Confidence 110 0 00 01 1223334445667899999999999999964 357899999999999999
Q ss_pred HHHHHHHHHhHHHHHH----HhC----C--------chH---------HHHHHHcCCCCCCCC--cc-hH----HHHHHH
Q 013035 287 VLTTTYLLAFPSILAS----ILG----S--------PFW---------QHVKEILNPETSVGA--RP-WV----YYTIYA 334 (451)
Q Consensus 287 iifassll~~p~~i~~----~l~----~--------~~~---------~~~~~~l~~~~~~~~--~~-~i----~~~iy~ 334 (451)
+|||++++++|+++++ +++ + .|. +++.+|++|+.++.. .+ |+ |.++|+
T Consensus 296 iIFassll~~p~~i~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~p~~~~iY~~~~~ 375 (490)
T 2ww9_A 296 VLFSYTILFYIHIFAFVLIQLVAKNEPTHIICKIMGHYENANNLLAVPTFPLSLLAPPTSFFKGVTQQPLTFITYSAFIL 375 (490)
T ss_dssp HHHHHHHHHHCSSSCSTTTHHHHHCCCCSSSCTTSBCCSCCSSSSCSCSSBSCCSSCCCCSSCCCCSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCccccccccchhccccccchhHHHHHHhCCccchhhhcccCchhhHHHHHHHH
Confidence 9999999999988877 542 1 132 234455666544321 12 45 888999
Q ss_pred HHHHHHHHHHh--c-cChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHhhccCCc
Q 013035 335 FFVFLFNIFDI--A-NLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEG 411 (451)
Q Consensus 335 ~~i~~Fs~f~~--~-~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~~~~~~~~~~~~~ 411 (451)
+++++||+||+ + .||||+||||||+|++|||+||| +|+|||+|+++|+|++||+|++++|++|++++. ++
T Consensus 376 ~lii~Fs~fy~~i~g~np~dvA~nLkk~G~~IpGiRpG-~T~~yL~~vi~rit~~Ga~~L~~lavlp~~l~~----~g-- 448 (490)
T 2ww9_A 376 VTGIWFADKWQAISGSSARDVALEFKDQGITLMGRREQ-NVAKELNKVIPIAAVTGASVLSLITVIGESLGL----KG-- 448 (490)
T ss_dssp HHHHHHHHHHHHSCSSCHHHHHHHHHHHHHTSSSCCCC-CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----CS--
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHcCCccCCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC--
Confidence 99999999994 5 69999999999999999999999 999999999999999999999999999999742 22
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhhHH
Q 013035 412 FSIGFTSVLIIVGSIIELRRSYQAYNVMPS 441 (451)
Q Consensus 412 ~~~~gtsllI~V~v~~~~~~qi~~~~~~~~ 441 (451)
||||+||+||+++|++||++++.+...
T Consensus 449 ---gGTslLI~VgV~~~~~~qi~~e~~~~g 475 (490)
T 2ww9_A 449 ---KAAGIVVGIAGGFSLLEVITIEYQQSG 475 (490)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 899999999999999999999887663
No 8
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=100.00 E-value=1.2e-87 Score=702.49 Aligned_cols=396 Identities=15% Similarity=0.197 Sum_probs=325.5
Q ss_pred cchhhhhhh-HHhhhhhhccccchhhHHHHHHHHHHHHHHHhCccccCCCccCCcchhhhhhhccCccchhhcccccccc
Q 013035 4 NRFLNFIRL-SSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKL 82 (451)
Q Consensus 4 ~~~~~~~~~-~~~~p~~~~~~~~~~l~~kil~Tl~il~iy~lG~~IPlPGi~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (451)
+|++|+.|+ .+++||+++|.+|+|+|+|++||++++++||+|+|||+||+|.++.+ +++.++++..|++|+
T Consensus 3 ~~~l~~~~p~~~~lP~v~~P~~~~~lr~kil~Tl~~L~iyrigs~IPlpGi~~~~~~--------~~~~~~~~~fa~~~~ 74 (476)
T 2wwb_A 3 IKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSA--------DPFYWMRVILASNRG 74 (476)
T ss_dssp SCCCCCCHHHHHHSCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHSCCCSSSTTTCS--------CCCHHHHHHHCSSCS
T ss_pred chHHHHHHHHHHhCCCCCCCCcCccHHHHHHHHHHHHHHHHHHccCCCCCcChhhcc--------ccHHHHHHHHccccc
Confidence 799999994 99999999999999999999999999999999999999999987531 367777775588999
Q ss_pred hhhhcCchhHHhHHHHHHHHH--hHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhH
Q 013035 83 SFFQLGISPQIVASILMQVLC--HIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKH 160 (451)
Q Consensus 83 slfsLGI~PyItAsIi~Qll~--~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~~~~~~~~~~~~~~ 160 (451)
|+|+|||+|||||||+||||+ .++|.+++++ ||+|+|++|||+|+++|++||++++.... ++.. .+.+...
T Consensus 75 SifaLGI~PyItASII~QLL~g~~iip~~~~l~-----gR~k~~~~tR~lti~la~iQa~~~v~~g~-~~~~-~~~~~~~ 147 (476)
T 2wwb_A 75 TLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK-----DRALFNGAQKLFGMIITIGQSIVYVMTGM-YGDP-SEMGAGI 147 (476)
T ss_dssp SSCSSSSTHHHHHHHHHHHHHHHCCCSCCSSSS-----CSSCHHHHHHHHHHHHHHHHHHHHHHHTS-SCCS-SCSCHHH
T ss_pred cHHHHhhHHHHHHHHHHHHHHhCCccccchhhc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcc-cCccHHH
Confidence 999999999999999999995 4688776653 99999999999999999999999865333 2221 2344456
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhc-cCCCcchHHHHHHHHhhHHHHHHHH------------------HHHHh--hcC--
Q 013035 161 VMVTAFLLVCGAMTMSWICDTISE-SGFGQGSSLIICVGILTGYTETLYK------------------MLSQL--LGS-- 217 (451)
Q Consensus 161 ~~~ivl~LvaG~~il~wL~e~it~-~GiGnG~SliI~~~I~~~lp~~~~~------------------~~~~~--~~~-- 217 (451)
.++++++|++|++++|||||+||| ||+|||+|++|++|||+++.|+.++ .++.. ...
T Consensus 148 ~~~ivl~L~~Gt~~lmwL~E~It~g~GiGnGiSLiI~agI~~~l~~~~f~p~~~~~~~~~e~~G~i~~~~~~~~~~~~~~ 227 (476)
T 2wwb_A 148 CLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKV 227 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCSSCSHHHHHHHHHHHHHHHHHTCCSSCSCCCSCCTTTTCCCHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHhcCcccccccccchhHHHHHHHHHHHhcccccc
Confidence 778999999999999999999999 9999999999999999999444332 11111 100
Q ss_pred --------CcchHHHHHHHHHHHHHHHHHHHHhhcceEEeeEeeccccccccccCCCCCCCCCCccccccccCCcchHHH
Q 013035 218 --------SVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLT 289 (451)
Q Consensus 218 --------~~~~~~~~~~~~~i~~~~~~~iv~~~~~~rrIPi~~~~~~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiif 289 (451)
... .+.+. .++..+++++.++++|+++||||+||+|. +++++|+|+|+|++|+||+||
T Consensus 228 ~~l~~~~~r~~-l~~~~-~ll~~~~v~~~vV~~q~~~rrIPv~yak~------------~g~~~~~PiKln~aGviPiIf 293 (476)
T 2wwb_A 228 RALREAFYRQN-LPNLM-NLIATIFVFAVVIYFQGFRVDLPIKSARY------------RGQYNTYPIKLFYTSNIPIIL 293 (476)
T ss_dssp SSSSSCSSSSS-HHHHH-HHHHHHHHHHHHHHHHHCCBCCCCCBCSS------------SSBCSCCCBCTTTSSHHHHHH
T ss_pred cchhhhhhccc-cchHH-HHHHHHHHHhheeEEEEEEEEEEEEeccc------------CCccceeeeeeccccchHHHH
Confidence 011 11112 22233445666899999999999999962 357899999999999999999
Q ss_pred HHHHHHhHHHHHHHh----C-C-------chHH-------------HHHHHcCCCCCCCC--cchHHHHHHHHHHHHHHH
Q 013035 290 TTYLLAFPSILASIL----G-S-------PFWQ-------------HVKEILNPETSVGA--RPWVYYTIYAFFVFLFNI 342 (451)
Q Consensus 290 assll~~p~~i~~~l----~-~-------~~~~-------------~~~~~l~~~~~~~~--~~~i~~~iy~~~i~~Fs~ 342 (451)
|++++++|+++++++ . + .|.. ++.+|++|+.++.. .+|+|.++|++++++||+
T Consensus 294 assll~~p~~i~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~l~~p~~~~~~~~~p~~~~iY~~lii~f~~ 373 (476)
T 2wwb_A 294 QSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCA 373 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSCHHHHCSSSTTCSCTTSSSCCSSSHHHHTSCCSSSSSCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCcchhhhhhhhhhccccccccccccHHHHHHcCCcchhhhhccccHHHHHHHHHHHHHHH
Confidence 999999999999986 2 1 1321 16778888654432 357899999999999988
Q ss_pred HHh------c-cChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHhhccCCccccc
Q 013035 343 FDI------A-NLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIG 415 (451)
Q Consensus 343 f~~------~-~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~~~~~~~~~~~~~~~~~ 415 (451)
||. + .||||+||||||||++|||+|| ++|+|||+|+++|+|++||+|++++|++|++++.. +|
T Consensus 374 fyt~~Wv~i~g~np~dvA~~Lkk~G~~IpGiRp-~~T~~yL~~vi~rit~~Ga~~l~~lavlp~~l~~~---------~g 443 (476)
T 2wwb_A 374 FFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRE-TSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAI---------GS 443 (476)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHHHHCTTTCCCCT-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS---------SC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cc
Confidence 763 3 5899999999999999999999 89999999999999999999999999999997521 48
Q ss_pred cchhHHHHHHHHHHHHHHHHHHh
Q 013035 416 FTSVLIIVGSIIELRRSYQAYNV 438 (451)
Q Consensus 416 gtsllI~V~v~~~~~~qi~~~~~ 438 (451)
|||+||+||++++++||++.+..
T Consensus 444 GTslLI~Vgv~~~~~e~i~~e~~ 466 (476)
T 2wwb_A 444 GTGILLAVTIIYQYFEIFVKEQS 466 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998875
No 9
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=62.14 E-value=4.8 Score=32.93 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCccccccCChhhHHHHHHhhh
Q 013035 351 EIADYLNKMGARIPNVKPGKATIEYLTKIQA 381 (451)
Q Consensus 351 ~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i~ 381 (451)
+.-++++| ...|||+|||+.-.+.+++...
T Consensus 30 ~~~~~~~k-~~~ipGFRkGKvP~~vi~k~yG 59 (109)
T 2nsc_A 30 KAVRYLNQ-RVEIPGFRKGRIPKNVLKMKLG 59 (109)
T ss_dssp HHHHHHHT-TCCCTTSCTTCCCHHHHHHHHG
T ss_pred HHHHHHhc-cCCCCCcCCCCCCHHHHHHHHh
Confidence 33344444 4799999999988887777665
No 10
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=54.80 E-value=7.6 Score=32.38 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=21.2
Q ss_pred HHHHHHcCCccccccCChhhHHHHHHhhhh
Q 013035 353 ADYLNKMGARIPNVKPGKATIEYLTKIQAS 382 (451)
Q Consensus 353 Ae~Lkk~g~~IpGirpG~~T~~yL~~~i~~ 382 (451)
-++++| ...|||+|||+.-.+.+++....
T Consensus 35 ~~~~~k-~v~ipGFRkGKvP~~vi~k~yG~ 63 (121)
T 1p9y_A 35 LVNVAK-KVRIDGLRKGKVPMNIVAQRYGA 63 (121)
T ss_dssp HHHHHT-TCCCTTSCTTCSCHHHHHHHHHH
T ss_pred HHHHHh-hCccCCcCCCCCCHHHHHHHHHH
Confidence 344433 47999999999888877776653
No 11
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=47.74 E-value=6.2 Score=32.42 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHH
Q 013035 351 EIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWG 387 (451)
Q Consensus 351 ~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i~~~t~~G 387 (451)
+.-++++| ...|||+|||+.-.+.+++...+-++..
T Consensus 29 ~~~~~~~k-~~~ipGFRkGKvP~~vi~k~yG~~~v~~ 64 (112)
T 2d3o_1 29 QVWAGLAR-DVRVPGFRPGKAPRKVIENRVGKGYVES 64 (112)
T ss_dssp HHHHHHHT-TSCBTTBCTTCCCSTTHHHHTTTTSSHH
T ss_pred HHHHHHHh-hCCCCCcCCCCCCHHHHHHHhCHHHHHH
Confidence 33444444 4789999999987777777665333333
No 12
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=22.49 E-value=96 Score=31.98 Aligned_cols=28 Identities=29% Similarity=0.616 Sum_probs=22.1
Q ss_pred hhhhccCCCcchHHHHHHHHhhHHHHHHHH
Q 013035 180 DTISESGFGQGSSLIICVGILTGYTETLYK 209 (451)
Q Consensus 180 e~it~~GiGnG~SliI~~~I~~~lp~~~~~ 209 (451)
|.....| +|+|++|.++++-+..+++.+
T Consensus 425 ~~l~~~g--gGTslLI~VgV~~~~~~qi~s 452 (482)
T 3mp7_A 425 DFLGALG--TGTGILLTVGILYRFYEEIAR 452 (482)
T ss_dssp HHHTCSS--CSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccC--CceeeeeeHHHHHHHHHHHHH
Confidence 5555455 599999999999988888754
No 13
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=22.48 E-value=44 Score=33.41 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=18.7
Q ss_pred CCccccccCChhhHHHHHHhhh
Q 013035 360 GARIPNVKPGKATIEYLTKIQA 381 (451)
Q Consensus 360 g~~IpGirpG~~T~~yL~~~i~ 381 (451)
...|||+||||.-..-+++...
T Consensus 41 ~~~ipGFRkGKvP~~~i~k~yG 62 (392)
T 1t11_A 41 NRRFDGFRKGKVPMKMVAKMYG 62 (392)
T ss_dssp TCCCTTSCSSCCCHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHh
Confidence 5799999999988888877765
No 14
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=21.52 E-value=46 Score=33.73 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=20.4
Q ss_pred HHHHHcCCccccccCChhhHHHHHHhhh
Q 013035 354 DYLNKMGARIPNVKPGKATIEYLTKIQA 381 (451)
Q Consensus 354 e~Lkk~g~~IpGirpG~~T~~yL~~~i~ 381 (451)
++++| ...|||+||||.-...+++...
T Consensus 33 ~~~~k-~~~ipGFRkGKvP~~vi~~~yG 59 (432)
T 1w26_A 33 VNVAK-KVRIDGFRKGKVPMNIVAQRYG 59 (432)
T ss_dssp HHHHH-HTTCGGGCCSSSCHHHHHHHHC
T ss_pred HHHhh-hCCCCCcCCCCCCHHHHHHHHh
Confidence 33443 3689999999988888887765
No 15
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=20.08 E-value=39 Score=34.31 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=18.0
Q ss_pred CCccccccCChhhHHHHHHhhhh
Q 013035 360 GARIPNVKPGKATIEYLTKIQAS 382 (451)
Q Consensus 360 g~~IpGirpG~~T~~yL~~~i~~ 382 (451)
...|||+|||+.-..-+++...+
T Consensus 38 ~v~ipGFRkGKvP~~vi~k~yG~ 60 (433)
T 3gty_X 38 RVEIPGFRKGRIPKNVLKMKLGE 60 (433)
T ss_dssp SCCCCC--CCCCCSHHHHTTSTT
T ss_pred hCCCCCCCCCCCcHHHHHHHhhH
Confidence 47999999999888888888776
Done!