RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 013035
(451 letters)
>gnl|CDD|215869 pfam00344, SecY, SecY translocase.
Length = 340
Score = 226 bits (578), Expect = 2e-70
Identities = 103/356 (28%), Positives = 170/356 (47%), Gaps = 23/356 (6%)
Query: 83 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIV 142
S F LGI P I ASI+MQ+L + P L +L KEG +G +KI+ Y +++L A+++A+ +
Sbjct: 1 SIFALGIGPYITASIIMQLLTVVGPKLEKLDKEGEEGRKKIQQYTRYLTLVLALIQAIGI 60
Query: 143 ACYSLPYSIYAASHSVK----HVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVG 198
Y ++ + ++++ L G M + W+ + I++ G G G SLII G
Sbjct: 61 VLGLGSYGAFSNGIVLGVGFLNLLLIVLQLTAGTMFLMWLGELITKYGIGNGISLIIFAG 120
Query: 199 ILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVV-VTEGCRKVKLQYYGFK 257
I+ + + S L + L LL + T+ + VV + E R++ +QY
Sbjct: 121 IVASIPWAIINLFSLLSSAGGLLSILYLLLLLLATLAVILLVVYLQEARRRIPIQYAKRV 180
Query: 258 LASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILN 317
+ + S Y+P +N +G+ P++ + LLA P +A LGS F L
Sbjct: 181 VGGGRGQSS-------YLPIKLNYAGVIPIIFASSLLANPQTIAQFLGSSFPLWPVSGLA 233
Query: 318 PETSVGARPWVYYTIYAFFVFLFNIF--DIANLPKEIADYLNKMGARIPNVKPGKATIEY 375
+G+ VY Y + F+ F I PK+IA+ L K G IP ++PGK+T +Y
Sbjct: 234 YYLPIGS--PVYILFYIVLIIFFSYFYTAIGFNPKDIAENLKKSGGFIPGIRPGKSTEKY 291
Query: 376 LTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRR 431
L ++ F G + L ++A +L G TS+LI VG ++
Sbjct: 292 LNRVIPRLTFIGAIFLGLIAVLPDLLGAL-------GGFGGTSLLIAVGVALDTYE 340
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed.
Length = 426
Score = 226 bits (579), Expect = 1e-69
Identities = 127/440 (28%), Positives = 208/440 (47%), Gaps = 37/440 (8%)
Query: 16 LNNAAESFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELG 74
+ ++ FK E+R+R+ T +++ RIG +IP+PG D + SG + L
Sbjct: 1 MLKTLKNAFKIKELRKRILFTLGALIVFRIGSYIPVPGIDPAAL-AQLFDQQSGGILGLF 59
Query: 75 DF---GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWIS 131
+ GA + S F LGI P I ASI+MQ+L ++P L +L+KEG G KI Y +++
Sbjct: 60 NLFSGGALSRFSIFALGIMPYITASIIMQLLTVVIPKLEELKKEGEAGRRKINQYTRYLT 119
Query: 132 LGFAILEAVIVACY----SLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGF 187
+ A ++++ +A S + + L G M + W+ + I+E G
Sbjct: 120 VVLAFVQSIGIAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTAGTMFLMWLGEQITERGI 179
Query: 188 GQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCR 247
G G SLII GI+ G + + S+ F L L+ +F V + V V + R
Sbjct: 180 GNGISLIIFAGIVAGLPSAIGQTFELARTGSLSILVF-LLLIVLFLAVIAFVVFVEQAQR 238
Query: 248 KVKLQY----YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASI 303
++ +QY G K+ Y+P +N +G+ PV+ + +L FP+ +A
Sbjct: 239 RIPVQYAKRQVGRKMYGGQS---------SYLPLKVNMAGVIPVIFASSILLFPATIAQF 289
Query: 304 LGSPFW-QHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIA---NLPKEIADYLNKM 359
GS W Q + L+P + +Y +YA + F F A N P+EIA+ L K
Sbjct: 290 FGSGSWLQWIANYLSPGS------PLYILLYALLIIFFTFFYTAIQFN-PEEIAENLKKS 342
Query: 360 GARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSV 419
G IP ++PG+ T EYL K+ G + L+ +A IL + L F G TS+
Sbjct: 343 GGFIPGIRPGEQTAEYLDKVLTRLTLVGAIYLAFIALLPEILQNAL---GVPFYFGGTSL 399
Query: 420 LIIVGSIIELRRSYQAYNVM 439
LI+VG ++ + ++ +
Sbjct: 400 LIVVGVALDTMKQIESQLMS 419
>gnl|CDD|214379 CHL00161, secY, preprotein translocase subunit SecY; Validated.
Length = 417
Score = 204 bits (521), Expect = 3e-61
Identities = 126/424 (29%), Positives = 198/424 (46%), Gaps = 36/424 (8%)
Query: 25 KSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF-----GAE 79
K E+ RL T L+++ R+G FIP+PG D L + L G
Sbjct: 7 KDELLNRLLFTLGLLLLIRLGTFIPVPGID-----HTQLYPSLSNNPLLNLLNTFSGGGF 61
Query: 80 LKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKE-GLDGHEKIKSYIWWISLGFAILE 138
+ F LGI P I ASI++Q+L I+PSL +L+KE G G KI Y +++LG+AI++
Sbjct: 62 FVIGLFALGILPYINASIIIQLLTSIIPSLEKLQKEEGEAGRRKINQYTRYLTLGWAIIQ 121
Query: 139 AVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVG 198
++ + + L Y + ++ + L G+M + W+ + I+E G G GSSL+I
Sbjct: 122 SIGI-SFWLKP--YLFNWNLLLALEIVLALTSGSMIVLWLSELITEKGLGNGSSLLIFFN 178
Query: 199 ILTGYTETLYKMLSQLLGSSVRW-WPFMLGLLGVFTIVTMWA-VVVTEGCRKVKLQYYGF 256
I++ L K+L LL S + LL +T+ + + E RK+ L
Sbjct: 179 IVSN----LPKLLQSLLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPL----- 229
Query: 257 KLASA---AREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVK 313
SA + Y+P +N +G+ P++ + LL P L +IL + F +
Sbjct: 230 --ISAKQLGKSSRL--ASNSYLPLRLNQAGVMPIIFASALLVLPGYLTNILLNQFLLPLL 285
Query: 314 EILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATI 373
+ S V Y + F F + N PK+I++ L KM IP ++PGKAT
Sbjct: 286 SLFLQLASFKILYLVLYFVLILFFSYFYSTIVLN-PKDISENLQKMAVSIPGIRPGKATT 344
Query: 374 EYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFS-IGFTSVLIIVGSIIELRRS 432
+YL K G L L+ +A +++ L F +G TS+LI+VG I+ R
Sbjct: 345 KYLKKTLNRLTLLGALFLAFIALLPNLIESVLN--LSVFKGLGTTSLLILVGVAIDTSRQ 402
Query: 433 YQAY 436
Q Y
Sbjct: 403 IQTY 406
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular
trafficking and secretion].
Length = 436
Score = 203 bits (519), Expect = 1e-60
Identities = 119/421 (28%), Positives = 200/421 (47%), Gaps = 20/421 (4%)
Query: 26 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFF 85
E+R+R+ T +++ RIG FIP+PG + + + S + + GA + S F
Sbjct: 17 PELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLILFNMFSGGALSRGSIF 76
Query: 86 QLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACY 145
LGI P I ASI+MQ+L P L +L KEG +G KI+ Y +++L A+++A+ V
Sbjct: 77 ALGIMPYITASIIMQLLTVGSPILKKLDKEGEEGRRKIQQYTRYLTLVLAVIQALGVV-L 135
Query: 146 SLPYSIYAAS---HSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTG 202
+ + ++ L G M + W+ + I++ G G G SLII GI+
Sbjct: 136 GGNNGGSPSDVGNGGIFFYLLIILQLTAGTMFLMWLGEQITKRGIGNGISLIIFAGIVAS 195
Query: 203 YTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVV-VTEGCRKVKLQYYGFKLASA 261
++ ++ L ++ L LL + T+ ++ VV V + R++ +QY +
Sbjct: 196 LPSAIFGIIGALPTGALFLSILFLLLLVLLTLAIIFLVVYVEQARRRIPIQYAKRQSYRG 255
Query: 262 AREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILN-PET 320
Y+P +N +G+ PV+ + LL FPS +A LG+ + L
Sbjct: 256 QS---------SYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNGGLAYYLSPLTSISD 306
Query: 321 SVGARPWVYYTIYAFFVFLFNIF--DIANLPKEIADYLNKMGARIPNVKPGKATIEYLTK 378
++ VY +Y + F+ F +I P+EIA+ L K G IP ++PGK T +YL +
Sbjct: 307 ALSPGSPVYIALYVVLIIFFSYFYTEIQFNPEEIAENLKKSGGFIPGIRPGKDTEKYLNR 366
Query: 379 IQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNV 438
+ F G L L ++A +L F G TS+LI+VG ++ +A +
Sbjct: 367 VIPRLTFIGALFLGLIAILPELLG---TAGGVPFYFGGTSLLIVVGVALDTYEQIEAELL 423
Query: 439 M 439
M
Sbjct: 424 M 424
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit.
Members of this protein family are the SecY component of
the SecYEG translocon, or protein translocation pore,
which is driven by the ATPase SecA. This model does not
discriminate bacterial from archaeal forms [Protein
fate, Protein and peptide secretion and trafficking].
Length = 410
Score = 184 bits (468), Expect = 2e-53
Identities = 113/424 (26%), Positives = 194/424 (45%), Gaps = 36/424 (8%)
Query: 29 RRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF--------GAEL 80
R +L T L+V+ RIG FIP+PG D S + + F GA
Sbjct: 1 REKLLFTLGLLVLFRIGTFIPIPGID--------ASAFQNLIQQNPIFGLLNTFSGGALG 52
Query: 81 KLSFFQLGISPQIVASILMQVLCHIVPSLVQLR-KEGLDGHEKIKSYIWWISLGFAILEA 139
++S F LGISP I ASI++Q+L VP L+QL+ KEG G KI +++L A +++
Sbjct: 53 QISIFALGISPYITASIIIQLLTGDVPPLLQLQKKEGEIGRRKINQLTRYLTLILAFIQS 112
Query: 140 VIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGI 199
+ + + Y ++ L G+M + W+ + I++ G G G SL+I GI
Sbjct: 113 LGIVMTGM--YGYVGDPGAFFYLLIVIQLTTGSMIVMWLGEQITKYGIGNGISLLIFAGI 170
Query: 200 LTGYTETL---YKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVV--TEGCRKVKLQYY 254
L ++ + + + + LL + + ++AVVV + RK+ +Q
Sbjct: 171 AATIPSGLLQPTEVRQSKVRDLISFLQNLPFLLYLIATIIVFAVVVFVQQARRKIPIQSA 230
Query: 255 GFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKE 314
+ + Y+P +N +G+ PV+ + LL+ P+ ++ L S
Sbjct: 231 KRQGGRRGSQS-------TYLPLKLNYAGVIPVIFASALLSNPATISQFLNSNQG--GAW 281
Query: 315 ILNPETSVGARPWVYYTIYAFFVFLFNIFDIANL--PKEIADYLNKMGARIPNVKPGKAT 372
LNP S+ + +Y + F+ F + P+++A L K G IP ++PGK T
Sbjct: 282 FLNPILSLSLSDPIGAILYLILIIFFSFFYVELQLNPEDMAKNLKKQGMFIPGIRPGKMT 341
Query: 373 IEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRS 432
+YL ++ F G L L ++A L + + +G TS+LI+VG I+ +
Sbjct: 342 EKYLKRVIPRLTFVGSLFLGLIALLPNFLG-AIGGLPTSKGLGGTSLLIVVGVAIDTYKQ 400
Query: 433 YQAY 436
++
Sbjct: 401 LESE 404
>gnl|CDD|183828 PRK12907, secY, preprotein translocase subunit SecY; Reviewed.
Length = 434
Score = 120 bits (302), Expect = 5e-30
Identities = 99/421 (23%), Positives = 200/421 (47%), Gaps = 24/421 (5%)
Query: 26 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFF 85
+EIRR++ T ++++ RIG FIP+P + ++ + V G ++ G GA S F
Sbjct: 12 AEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKVQDQANVLGMLNVFGG-GALQHFSIF 70
Query: 86 QLGISPQIVASILMQVL-CHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVAC 144
+GI+P I ASI++Q+L ++P + K+G G +K + + ++ A ++A+ +
Sbjct: 71 AVGITPYITASIIVQLLQMDVIPKFSEWAKQGEMGRKKSAQFTRYFTIILAFIQAIGM-- 128
Query: 145 YSLPYSIYAASHSVKHVMVTAFLLVCGAMT-----MSWICDTISESGFGQGSSLIICVGI 199
S ++ A + T +L + +T + W+ + I+ +G G G S++I G+
Sbjct: 129 -SYGFNNIAGGQLITDQSWTTYLFIATVLTAGTAFLLWLGEQITANGVGNGISMLIFAGL 187
Query: 200 LTG---YTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVV-VTEGCRKVKLQYYG 255
+ +Y Q G + + L+G+ + + V+ + + RK+ +QY
Sbjct: 188 VAAIPNVANQIYLQQFQNAGDQLFMHIIKMLLIGLVILAIVVGVIYIQQAVRKIPIQYAK 247
Query: 256 FKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASIL-GSPFWQHVKE 314
+ + + T ++P +N +G+ PV+ + L P +A + S + +
Sbjct: 248 AVSGNNQYQGAKNT----HLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPDSSVSKWLVA 303
Query: 315 ILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIE 374
L+ +G +V + + + F I P+++A+ L K +P ++PGK+T +
Sbjct: 304 NLDFAHPIGMTLYVGLIVAFTYFYAF----IQVNPEQMAENLKKQNGYVPGIRPGKSTEQ 359
Query: 375 YLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQ 434
Y+TKI F G + L ++ + + + IG TS+LIIVG +E ++ +
Sbjct: 360 YVTKILYRLTFIGAIFLGAISILPLVFTK-IATLPPSAQIGGTSLLIIVGVALETMKTLE 418
Query: 435 A 435
+
Sbjct: 419 S 419
>gnl|CDD|237095 PRK12417, secY, preprotein translocase subunit SecY; Reviewed.
Length = 404
Score = 99.3 bits (248), Expect = 9e-23
Identities = 91/425 (21%), Positives = 177/425 (41%), Gaps = 48/425 (11%)
Query: 22 SFFKSEIRRRLFVTAVLIVISRIGYFIPLPGF---DRRLIPQDYLSFVSGSVDELGDFGA 78
F I +++ T ++ I +G I +P D + +L + + GD
Sbjct: 6 KFEYKIIYKKILFTCFILFIYILGSNISIPFVSYNDMLGGHESFLKIAAANTG--GDLRT 63
Query: 79 ELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILE 138
L+ F LG+ P + + I++Q+ + L K+ ++ + + +L A+++
Sbjct: 64 ---LNIFSLGLGPWMTSMIILQLFSYR--KRDGLMKQTIEEQHYRERIL---TLIIAVIQ 115
Query: 139 AVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVG 198
++ V SLP S + +++ +LV G M + W+ D + G G G I+ V
Sbjct: 116 SLAVI-LSLPSK-ERISQTN--ILLNTLILVTGTMFLVWLSDLNARYGIG-GPMPIVLVS 170
Query: 199 ILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKL 258
++ + + + + + +L LL + T+ ++ + + E ++ Y
Sbjct: 171 MIKSIPQDVIEYIDASHIVII-----LLILLVIITLFFLYFIELVE----YRIPYNDIMN 221
Query: 259 ASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVK-EILN 317
+ + S Y+ +NP+G P++ + LL FP + ++ S F +
Sbjct: 222 HNRFKMYS-------YLSIKLNPAGGMPIMYSMSLLVFPQYIIILILSIFPNNSGISADM 274
Query: 318 PETSVGARPWVYYTIYAFFVFLFNI-FDIANL-PKEIADYLNKMGARIPNVKPGKATIEY 375
S G+ V T+Y FL + F N+ K+IA + K G IP V PGK T Y
Sbjct: 275 DMLSFGSPLGV--TVYLILQFLLSYFFSFVNINTKQIAKDMLKSGNYIPGVYPGKDTERY 332
Query: 376 LTKIQASTRFWGGLLLSILA---TSSTILDHYLRRINEGFSIGFTSVLII-VGSIIELRR 431
L I ++G L ++++A T+ D +L I F+ ++ VG +
Sbjct: 333 LNYIARRFSWFGALFVTVIAGIPLYFTLFDPHLSTE-----IYFSGQFMMFVGMSFNIAD 387
Query: 432 SYQAY 436
+A
Sbjct: 388 EIRAL 392
>gnl|CDD|131966 TIGR02920, acc_sec_Y2, accessory Sec system translocase SecY2.
Members of this family are restricted to the Firmicutes
lineage (low-GC Gram-positive bacteria) and appear to be
paralogous to, and much more divergent than, the
preprotein translocase SecY. Members include the SecY2
protein of the accessory Sec system in Streptococcus
gordonii, involved in export of the highly glycosylated
platelet-binding protein GspB [Protein fate, Protein and
peptide secretion and trafficking].
Length = 395
Score = 87.9 bits (218), Expect = 6e-19
Identities = 86/421 (20%), Positives = 162/421 (38%), Gaps = 49/421 (11%)
Query: 28 IRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYL----SFVSGSVDELGDFGAELKLS 83
I +++ T +++I +G +IP+P + + QD SF ++ G G LS
Sbjct: 2 IYKKILFTCFILIIYVLGSYIPIPFVE--VSKQDMEGVKNSFFKIAIANTG--GNLTTLS 57
Query: 84 FFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGH-EKIKSYIWWISLGFAILEAVIV 142
F LG+ P + + I++Q+ + +G D K + Y ++ A+I
Sbjct: 58 IFSLGLGPWMTSMIILQLFSFT-------KSDGFDAQSPKEQQYRERF---LTLIIAIIQ 107
Query: 143 ACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTG 202
+ S ++++ +LV G + W+ D ++ G G GS I+ V +L
Sbjct: 108 GLAIIHSFTNKNGLSDFNMLLATLILVTGTCLLVWLADLNAKYGIG-GSMPIVLVSMLKN 166
Query: 203 YTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAA 262
++ +L S W ++ LL + T+V ++ + E ++ L + +
Sbjct: 167 IPSNVF----ELFQMSYIW---LIALLILLTLVALFLLAFIERAE-YRIPVNDISLHNRS 218
Query: 263 REDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVK-EILNPETS 321
S Y+P +NP+G + LL P + +LG F + S
Sbjct: 219 NLMS-------YLPIKLNPAGGMMYMYVMSLLMLPQYIIILLGRIFPNSSLINNWVFQFS 271
Query: 322 VGARPWVYYTIYAFFVFLFNIFDIANL--PKEIADYLNKMGARIPNVKPGKATIEYLTKI 379
+ + IY L + F PKEI+ K G IP + PGK T YL ++
Sbjct: 272 FSSPVGIL--IYLILQMLLSYFFTFVNINPKEISKSFRKSGNYIPGIAPGKDTQRYLNRL 329
Query: 380 QASTRFWGGLLLSILAT----SSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQA 435
++GG+ + + + H L + ++I G + +
Sbjct: 330 ARRFCWFGGVFNAFQLGIPLYFALFVPHLLT-----EAYIPGQFMMITGMSFNIADEIRT 384
Query: 436 Y 436
Sbjct: 385 I 385
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed.
Length = 462
Score = 34.0 bits (79), Expect = 0.17
Identities = 87/424 (20%), Positives = 150/424 (35%), Gaps = 80/424 (18%)
Query: 29 RRRLFVTAVLIVISRIGYF----IPLPGFDRRLIPQ-DYLSFVSGSVDELGDFGAELKLS 83
+ +L TA+++++ YF IPL G + + L + G FG +
Sbjct: 27 KEKLKWTAIVLIL----YFILTNIPLYGISQSSQDLFELLRIIFA-----GSFG-----T 72
Query: 84 FFQLGISPQIVASILMQVLCHIVPS-LVQLRKEGLDGHEKIKSYIWWISLGFAILEAV-- 140
QLGI P + A I++Q+L V S L+ L + + +++ LEA
Sbjct: 73 LLQLGIGPIVTAGIILQLL---VGSKLINLDLSDPEDRALFQGLQKLLAIVMIALEAAPF 129
Query: 141 IVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVG-- 198
++A P + A++ + ++ L G + + + + +S+ G G G SL I G
Sbjct: 130 VLAGAFGPATGLASTPLLALLIFLQLFL--GGILIILLDELVSKWGIGSGISLFILAGVS 187
Query: 199 --ILTG------YTETL---------YKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVV 241
I G + L + S L ++ L LLG+ T + ++ +V
Sbjct: 188 QTIFVGLFNWLTGGQGLPVGFIPALFSAITSGNLTLALLLTTRGLLLLGLITTIVIFLIV 247
Query: 242 VTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILA 301
V +V++ L+ + P + PV+ L A +
Sbjct: 248 VYLESMRVEI-----PLSHGR-----VRGARGRYPLKFIYVSVLPVILVRALQANIQLFG 297
Query: 302 SIL---GSPFWQHVKEILNPETS-----------------VGARPWVYYTIYAFFVFLFN 341
+L G P S R +Y LF
Sbjct: 298 QLLQRLGIPILGTYDSSGASPISGLAYYLSPPHSPYDWIQDPLRAIIYALFMIVLSILFA 357
Query: 342 IF--DIANL-PKEIADYLNKMGARIPNVKPGKATIE-YLTKIQASTRFWGGLLLSILATS 397
IF + L PK A L G +IP + IE L + GG ++ +LA
Sbjct: 358 IFWVETTGLDPKTQARQLQNSGMQIPGFRRNPKVIEKVLERYIPPVTVIGGAIVGLLAVL 417
Query: 398 STIL 401
+ +L
Sbjct: 418 ADLL 421
>gnl|CDD|215728 pfam00115, COX1, Cytochrome C and Quinol oxidase polypeptide I.
Length = 441
Score = 28.7 bits (65), Expect = 6.8
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 191 SSLIICVGILTGYTE----TLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGC 246
L+ V +L G T Y LS S V W L L+G+ +++ +VT
Sbjct: 95 GGLLALVSLLLGGGAGRGWTEYPPLSSTSSSPVDLWILGLLLVGIGSLLGAINFIVTILK 154
Query: 247 RKVK 250
R+
Sbjct: 155 RRAP 158
>gnl|CDD|226444 COG3934, COG3934, Endo-beta-mannanase [Carbohydrate transport and
metabolism].
Length = 587
Score = 28.3 bits (63), Expect = 9.2
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 4/94 (4%)
Query: 262 AREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETS 321
+ + Y+ + P + P + L P + A I + FW E+
Sbjct: 113 IYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKW 172
Query: 322 VGARPWVYYTIYAFFVFLFNIFDIANLPKEIADY 355
+ V A + ++ DY
Sbjct: 173 LDDGHLVSVGDPASPWPQYAPYNARF----YVDY 202
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.141 0.428
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,694,158
Number of extensions: 2385424
Number of successful extensions: 3507
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3440
Number of HSP's successfully gapped: 61
Length of query: 451
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 351
Effective length of database: 6,502,202
Effective search space: 2282272902
Effective search space used: 2282272902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.3 bits)