RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013035
(451 letters)
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane
protein translocation protein- protein complex,
ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Length = 429
Score = 215 bits (551), Expect = 1e-65
Identities = 129/439 (29%), Positives = 220/439 (50%), Gaps = 38/439 (8%)
Query: 18 NAAESFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF 76
++ F+ E+R++ T ++ VI R+G IP+PG + + +D+L GSV L D
Sbjct: 3 EYLKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEAL-RDFLKAFEGSVFALYDI 61
Query: 77 ---GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKE-GLDGHEKIKSYIWWISL 132
G +L+ F LG+ P I ASI+MQ+L +PSL +L KE G G KI Y +++L
Sbjct: 62 FSGGNLGRLTVFALGVMPYISASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTL 121
Query: 133 GFAILEAVIVACY-----SLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGF 187
A ++++ +A + S + + +++T LV G M + WI D I+E G
Sbjct: 122 FVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITEKGI 181
Query: 188 GQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCR 247
G G+SLII GI+ + + + ++ + +L ++ + + + V V E R
Sbjct: 182 GNGASLIIFAGIVANFPNAVIQFYEKVKTGDIGPL-TLLLIIALIIAIIVGIVYVQEAER 240
Query: 248 KVKLQY----YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASI 303
++ +QY G +L + + Y+P INP+G+ P++ LL PS L +
Sbjct: 241 RIPIQYPGRQVGRQLYAGRKT---------YLPIKINPAGVIPIIFAQALLLIPSTLLNF 291
Query: 304 LGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIA---NLPKEIADYLNKMG 360
+ +PF + + ++ P Y +Y F+ F F A N P E+A+ L+K G
Sbjct: 292 VQNPFIKVIADMFQPGA------IFYNFLYVTFIVFFTYFYTAVLIN-PVELAENLHKAG 344
Query: 361 ARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVL 420
A IP V+PG+ T++YL +I F+G L LS++A ++ + N F G T+ L
Sbjct: 345 AFIPGVRPGQDTVKYLERIINRLIFFGALFLSVIALIPILISVWF---NIPFYFGGTTAL 401
Query: 421 IIVGSIIELRRSYQAYNVM 439
I+VG ++ R + Y +
Sbjct: 402 IVVGVALDTFRQIETYLIQ 420
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC,
protein-conducting-channel, membrane, prote transport,
translocation, transmembrane, transport; 3.20A {Thermus
thermophilus} PDB: 2zqp_Y
Length = 434
Score = 214 bits (548), Expect = 4e-65
Identities = 110/439 (25%), Positives = 185/439 (42%), Gaps = 37/439 (8%)
Query: 18 NAAESFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF 76
A S + E+R+R+ T +++ R+G FIP PG D I Q++L G V + +
Sbjct: 3 KAFWSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKI-QEFLRTAQGGVFGIINL 61
Query: 77 ---GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLG 133
G + S F LGI P I A+I+MQ+L +VP+L +L KEG +G I Y +
Sbjct: 62 FSGGNFERFSIFALGIMPYITAAIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIA 121
Query: 134 FAILEAVIVACY-----SLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFG 188
+ +A + + S V V G + W+ + I+E G G
Sbjct: 122 LGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAGIALLLWMAERITEYGIG 181
Query: 189 QGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRK 248
G+SLII GI+ + + + + + V F L L + V + R+
Sbjct: 182 NGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLVAF-LFFLAFIVLAFAGMAAVQQAERR 240
Query: 249 VKLQY----YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASIL 304
+ +QY G ++ YIP +N +G+ P++ +L P LA+
Sbjct: 241 IPVQYARKVVGGRVYGGQAT---------YIPIKLNAAGVIPIIFAAAILQIPIFLAAPF 291
Query: 305 G-SPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIA---NLPKEIADYLNKMG 360
+P Q + NP I V LF A + PK IA+ L + G
Sbjct: 292 QDNPVLQGIANFFNPTR------PSGLFIEVLLVILFTYVYTAVQFD-PKRIAESLREYG 344
Query: 361 ARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVL 420
IP ++PG+ T+++L I + WG L L ++ I+ + + +L
Sbjct: 345 GFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQNLTG--IHSIAFSGIGLL 402
Query: 421 IIVGSIIELRRSYQAYNVM 439
I+VG ++ R ++ ++
Sbjct: 403 IVVGVALDTLRQVESQLML 421
>3din_C Preprotein translocase subunit SECY; protein translocation,
membrane protein, ATPase, ATP-binding membrane,
nucleotide-binding, protein transport; HET: ADP; 4.50A
{Thermotoga maritima MSB8}
Length = 431
Score = 210 bits (538), Expect = 1e-63
Identities = 104/440 (23%), Positives = 206/440 (46%), Gaps = 45/440 (10%)
Query: 18 NAAESFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF 76
A ++ FK E+R R+ T + +++ R+G +IP+PG + + ++ + G
Sbjct: 3 QAFKNAFKIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAW-GEIFRRIAETAGVAGIL 61
Query: 77 --------GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIW 128
GA + S F + ++P I ASI++Q+L ++PSL ++ +EG +G +K Y
Sbjct: 62 SFYDVFTGGALSRFSVFTMSVTPYITASIILQLLASVMPSLKEMLREGEEGRKKFAKYTR 121
Query: 129 WISLGFAILEAVIVACY---SLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISES 185
++L +A V+ S P + + ++ +++ ++ G M + W+ + I+E
Sbjct: 122 RLTLLIGGFQAFFVSFSLARSNPDMVAPGVNVLQFTVLSTMSMLAGTMFLLWLGERITEK 181
Query: 186 GFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEG 245
G G G S++I GI+ Y + + L + L+ V I ++V +
Sbjct: 182 GIGNGISILIFAGIVARYPSYIRQAYLGGLN-----LLEWIFLIAVALITIFGIILVQQA 236
Query: 246 CRKVKLQY----YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILA 301
R++ +QY G ++ A Y+P +N G+ P++ + +++ PS +A
Sbjct: 237 ERRITIQYARRVTGRRVYGGAST---------YLPIKVNQGGVIPIIFASAIVSIPSAIA 287
Query: 302 SILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANL--PKEIADYLNKM 359
SI + ++ + ++Y IY VF F F + P+EI++ + K
Sbjct: 288 SITNNETLKN---LFRAGG------FLYLLIYGLLVFFFTYFYSVVIFDPREISENIRKY 338
Query: 360 GARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSV 419
G IP ++PG++T +YL ++ F G + L ++A ++ + IG TS
Sbjct: 339 GGYIPGLRPGRSTEQYLHRVLNRVTFIGAVFLVVIALLPYLVQGAI---KVNVWIGGTSA 395
Query: 420 LIIVGSIIELRRSYQAYNVM 439
LI VG +++ + + + VM
Sbjct: 396 LIAVGVALDIIQQMETHMVM 415
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein,
nucleotide-binding, PR biosynthesis, translation,
zinc-finger, 70S ribosome, ribos translocon; 7.10A
{Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Length = 435
Score = 210 bits (536), Expect = 2e-63
Identities = 113/430 (26%), Positives = 194/430 (45%), Gaps = 38/430 (8%)
Query: 27 EIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF---GAELKLS 83
E++RRL +++ RIG FIP+PG D ++ L G++ E+ + GA + S
Sbjct: 11 ELKRRLLFVIGALIVFRIGSFIPIPGIDAAVL-AKLLEQQRGTIIEMFNMFSGGALSRAS 69
Query: 84 FFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVA 143
F LGI P I ASI++Q+L + P+L +++KEG G KI Y + +L AI +++ +A
Sbjct: 70 IFALGIMPYISASIIIQLLTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIA 129
Query: 144 CYSLPYSIYAA---SHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGIL 200
+ LV G M + W+ + I+E G G G S+II GI+
Sbjct: 130 TGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIV 189
Query: 201 TGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQY----YGF 256
G + + Q + + L + + VT + V V G R++ + Y G
Sbjct: 190 AGLPPAIAHTIEQARQGDLHFLVL-LLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGR 248
Query: 257 KLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGS----PFWQHV 312
++ +A ++P +N +G+ P + + ++ FP+ +AS G + +
Sbjct: 249 RVYAAQST---------HLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGWNWLTTI 299
Query: 313 KEILNPETSVGARPWVYYTIYAFFVFLFNIFDIA---NLPKEIADYLNKMGARIPNVKPG 369
L P +Y +YA + F F A N P+E AD L K GA +P ++PG
Sbjct: 300 SLYLQPGQ------PLYVLLYASAIIFFCFFYTALVFN-PRETADNLKKSGAFVPGIRPG 352
Query: 370 KATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIEL 429
+ T +Y+ K+ G L ++ + + + F G TS+LI+V I++
Sbjct: 353 EQTAKYIDKVMTRLTLVGALYITFICLIPEFMRDAM---KVPFYFGGTSLLIVVVVIMDF 409
Query: 430 RRSYQAYNVM 439
Q +
Sbjct: 410 MAQVQTLMMS 419
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY,
membrane protein, protein channels, protein transport;
3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1
PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Length = 436
Score = 157 bits (400), Expect = 1e-43
Identities = 69/443 (15%), Positives = 135/443 (30%), Gaps = 66/443 (14%)
Query: 25 KSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSF 84
+ + +L T +++V+ I I + ++ F A +
Sbjct: 20 EITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQI--PAIFEFWQT-------ITASRIGTL 70
Query: 85 FQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVAC 144
LGI P + A I+MQ+L + ++Q+ + + +S+ +EAV+
Sbjct: 71 ITLGIGPIVTAGIIMQLL--VGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFV- 127
Query: 145 YSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTG-- 202
+ + + + G++ + ++ + +S+ G G G L I G+
Sbjct: 128 ----GAGAFGILTPLLAFLVIIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIF 183
Query: 203 ----YTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKL 258
E L V ++ ++G IV + V ++ L + K
Sbjct: 184 VGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTI-IVFLMVVYAECMRVEIPLAHGRIKG 242
Query: 259 ASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASIL------------GS 306
A P PV+ L A + L G
Sbjct: 243 AVG------------KYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGG 290
Query: 307 PFWQHVKEILNPETSVGA------RPWVYYTIYAFFVFLFNIFDIANL---PKEIADYLN 357
+ L+ + + VY +F IF + PK +A +
Sbjct: 291 RAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIG 350
Query: 358 KMGARIPNVKPGKATIEY-LTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGF 416
+G I + + IE+ L + + LAT + + G G
Sbjct: 351 SLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFI---------GALGGG 401
Query: 417 TSVLIIVGSIIELRRSYQAYNVM 439
T VL+ V + +
Sbjct: 402 TGVLLTVSIVYRMYEQLLRERTS 424
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane
protein complex, preprotein TRAN membrane insertion,;
2.90A {Pyrococcus furiosus}
Length = 482
Score = 154 bits (392), Expect = 4e-42
Identities = 81/487 (16%), Positives = 153/487 (31%), Gaps = 84/487 (17%)
Query: 5 RFLNFIR-LSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYL 63
+ I L + +R R T V +++ + IP+ G R+ QDY
Sbjct: 2 GARDIIYALERWFPEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGIPERI--QDYF 59
Query: 64 SFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKI 123
F+ A S LGI P + A I++Q+L + +++L +
Sbjct: 60 QFLRV-------VLAGRNGSILTLGIGPIVTAGIILQLL--VGSEIIKLDLANPEDRRFY 110
Query: 124 KSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTIS 183
++ S+ EA + + + ++ L G + + + + +S
Sbjct: 111 QALQRVFSVFMCFFEAAVWI-LGGAFGRVGVDVTYAIAVLMILQLAMGGIVLIILDELVS 169
Query: 184 ESGFGQGSSLIICVGILTG---------------------------YTETLYKMLSQLLG 216
+ G G G SL I G+ + +L L
Sbjct: 170 KWGIGSGISLFIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGDLW 229
Query: 217 SSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIP 276
++ +L V + ++ +VV +V++ L V P
Sbjct: 230 GAIYRGGSAPDMLSVVATIVVFFIVVYFESMRVEIP-----LGYRGVT------VRGSYP 278
Query: 277 FNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEI--------------LNPETSV 322
P++ T L A + A +L + + P ++
Sbjct: 279 IRFLYVSNIPIILTFALYANIQLWARVLDRLGHPWLGRFDPTTGSPISGFVLYVIPPRNI 338
Query: 323 GA------RPWVYYTIYAFFVFLFNIFDIANL---PKEIADYLNKMGARIPNVKPGKATI 373
+ R VY + F LF + + IA L + G +IP + T+
Sbjct: 339 FSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARSIARQLQRAGLQIPGFRRDPRTL 398
Query: 374 E-YLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRS 432
E L + FWG L ++++A + L G T +L+ VG +
Sbjct: 399 EKVLQRYIPYVTFWGSLTVALIAVLADFL---------GALGTGTGILLTVGILYRFYEE 449
Query: 433 YQAYNVM 439
+
Sbjct: 450 IAREQIT 456
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome,
protein EXIT tunnel, cotranslational protein
translocation, protein conducting channel; 6.48A {Canis
lupus familiaris}
Length = 476
Score = 122 bits (307), Expect = 1e-30
Identities = 68/477 (14%), Positives = 147/477 (30%), Gaps = 75/477 (15%)
Query: 5 RFLNFIR-LSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYL 63
+FL I+ +L + K + + ++ TA+ + I + IPL G +
Sbjct: 4 KFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFY 63
Query: 64 SFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKI 123
A + + +LGISP + + ++MQ+L V +
Sbjct: 64 WMRV--------ILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKD---RALF 112
Query: 124 KSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTIS 183
+ I ++++ + + ++ L + + + + +
Sbjct: 113 NGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLIT--IQLFVAGLIVLLLDELLQ 170
Query: 184 ES-GFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVV 242
+ G G G SL I I + + G + + ++ L + T +
Sbjct: 171 KGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRAL 230
Query: 243 TEGCRKVKLQYYGFKLASAA-----------REDSPIT-----EVEPYIPFNINPSGMQP 286
E + L +A+ R D PI P + + P
Sbjct: 231 REAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIP 290
Query: 287 VLTTTYLLAFPSILASILGSPFWQH-------------------------VKEILNPETS 321
++ + L++ +++ +L + F + + L+P S
Sbjct: 291 IILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPES 350
Query: 322 VGA------RPWVYYTIYAFFVFLFNIFDIANL---PKEIADYLNKMGARIPNVKPGKAT 372
G+ VY F+ I K++A L + + +
Sbjct: 351 FGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETS-M 409
Query: 373 IEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIEL 429
+ L + + +GGL + L+ + L G T +L+ V I +
Sbjct: 410 VHELNRYIPTAAAFGGLCIGALSVLADFL---------GAIGSGTGILLAVTIIYQY 457
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane,
phospho signal sequence, membrane, ribosome, transport;
8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Length = 490
Score = 106 bits (265), Expect = 5e-25
Identities = 71/507 (14%), Positives = 146/507 (28%), Gaps = 84/507 (16%)
Query: 1 MYKNRFLNFIR-LSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIP 59
M R ++ ++ + +L F K ++ T +I PL G +P
Sbjct: 1 MSGFRLIDIVKPILPILPEVELPFEKLPFDDKIVYTIFAGLIYLFA-QFPLVG-----LP 54
Query: 60 QDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDG 119
+ V+ + L + + G+ P I + +++Q+L ++++ +
Sbjct: 55 KATTPNVNDPIYFLRGVFGCEPRTLLEFGLFPNISSGLILQLLA--GLKVIKVNFKIQSD 112
Query: 120 HEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWIC 179
E +S ++ ++ I + SV + + F LV + + +
Sbjct: 113 RELFQSLTKVFAIVQYVILTNIFIFAGY----FGDDLSVVQIGLINFQLVGAGIFTTLLA 168
Query: 180 DTISES-GFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMW 238
+ I + GF G+ +I V I T + + +G L+ + +
Sbjct: 169 EVIDKGFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDD-QTEAQGALINLIQGLRSK 227
Query: 239 AVVVTEGCRKVKLQYYGFKLASA---------------AREDSPIT-----EVEPYIPFN 278
G + Y L + R + PI P
Sbjct: 228 HKTFIGGIISAFNRDYLPNLTTTIIVLAIAIIVCYLQSVRVELPIRSTRARGTNNVYPIK 287
Query: 279 INPSGMQPVLTTTYLLAFPSILASILGSPF-------------------------WQHVK 313
+ +G VL + +L + I A +L
Sbjct: 288 LLYTGCLSVLFSYTILFYIHIFAFVLIQLVAKNEPTHIICKIMGHYENANNLLAVPTFPL 347
Query: 314 EILNPETSVGARPW-------VYYTIYAFFVFLFNIFDIANL---PKEIADYLNKMGARI 363
+L P TS Y F A +++A G +
Sbjct: 348 SLLAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFKDQGITL 407
Query: 364 PNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIV 423
+ + + L K+ G +LS++ L G +++ +
Sbjct: 408 MGRRE-QNVAKELNKVIPIAAVTGASVLSLITVIGESL---------GLKGKAAGIVVGI 457
Query: 424 GSIIEL----RRSYQAYNVMPSLSKAL 446
L YQ +L++ L
Sbjct: 458 AGGFSLLEVITIEYQQSGGQSALNQVL 484
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 9e-08
Identities = 78/482 (16%), Positives = 140/482 (29%), Gaps = 180/482 (37%)
Query: 21 ESFFKSEIRR-----RLFVTAVLIVISRIGYFIPLP------------GFD-RRLI---- 58
+ +F+ E+R + V ++ + L G + +
Sbjct: 167 DDYFE-ELRDLYQTYHVLVGDLIKFSAET--LSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 59 ---PQDYL--SFVSG---SVDELGDFGAELKLSFFQLGISPQIVASILMQVLCH----IV 106
+DYL +S V +L + K LG +P + S L H +
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAK----LLGFTPGELRSYLKGATGHSQGLVT 279
Query: 107 PSLVQLRKEGLDGHEKIKSYI---WWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMV 163
+ ++ I ++I G EA SLP SI S +
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFI--GVRCYEAY--PNTSLPPSILEDSLENNEGVP 335
Query: 164 TAFLLVCGAMTMSWICDTISE--SGFGQGSSLIICV--G----ILTGYTETLYKMLSQLL 215
+ L + +T + D +++ S G + I + G +++G ++LY + L
Sbjct: 336 SPMLSISN-LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL- 393
Query: 216 GSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYI 275
RK K A + + S I
Sbjct: 394 -------------------------------RKAK--------APSGLDQSR-------I 407
Query: 276 PFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQH------VKEILNPETSVGARPW-- 327
PF S + + +L P + SPF H +++N + +
Sbjct: 408 PF----SERKLKFSNRFL---P------VASPF--HSHLLVPASDLINKDLVKNNVSFNA 452
Query: 328 ------VYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQA 381
VY T F+ D+ L I++ + R+P V
Sbjct: 453 KDIQIPVYDT--------FDGSDLRVLSGSISERIVDCIIRLP-V--------------- 488
Query: 382 STRFWGGLLLSILATSST-ILD----------HYLRRINEGFSIGFTSVLIIVGSIIELR 430
W + +T ILD R +G T V +IV +++
Sbjct: 489 ---KWE----TTTQFKATHILDFGPGGASGLGVLTHRNKDG-----TGVRVIVAGTLDIN 536
Query: 431 RS 432
Sbjct: 537 PD 538
Score = 41.6 bits (97), Expect = 6e-04
Identities = 87/442 (19%), Positives = 140/442 (31%), Gaps = 144/442 (32%)
Query: 62 YLSFVSGSVD--ELGDFGAELKLSF--FQLGISPQIVASILMQVLCH-IVPSLVQLRKEG 116
+L +VS V+ ++G F L L F+ L H + L+Q
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFE--------NCYLEGNDIHALAAKLLQENDTT 115
Query: 117 LDG-HEKIKSYIWWISLGF---------AILEAV------IVACY-----SLPY-----S 150
L E IK+YI + A+ AV +VA + + Y
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 151 IYAASHSVKHVMVTAFLLVCGAMTMSWICDTIS-ESGFGQG------------------- 190
+Y H +V + I T+ E F QG
Sbjct: 176 LYQTYHV----LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 191 -SSLIICVGILTGYTETL-YKMLSQLLGSS---VRWWPFMLGLLGVFT-IVTMWAVVV-- 242
S I C I G + Y + ++LLG + +R ++ G G +VT AV +
Sbjct: 232 LSIPISCPLI--GVIQLAHYVVTAKLLGFTPGELR--SYLKGATGHSQGLVT--AVAIAE 285
Query: 243 -------TEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLA 295
RK + F + E P T + PS ++ L
Sbjct: 286 TDSWESFFVSVRKA-ITVL-FFIGVRCYEAYPNTSLP--------PSILEDSLENN--EG 333
Query: 296 FPSILASILGSPFWQ---HVKEILNPETSVGARPWVYYTIYAFFVFLFN---IFDIANLP 349
PS + SI Q +V + N + + A V + L N ++ P
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNK-TN--SHLPAGKQVE-------ISLVNGAKNLVVSGPP 383
Query: 350 KE---IADYLNKMGA-------RIPNVKPGKATIEYLTKIQASTRFWGGLLLSI------ 393
+ + L K A RIP + K++ S RF L +
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSE---------RKLKFSNRF-----LPVASPFHS 429
Query: 394 --LATSSTILDHYLRRINEGFS 413
L +S +++ L + N F+
Sbjct: 430 HLLVPASDLINKDLVKNNVSFN 451
Score = 35.4 bits (81), Expect = 0.041
Identities = 39/166 (23%), Positives = 54/166 (32%), Gaps = 48/166 (28%)
Query: 297 PSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFF--VFLFNIFDI----ANLPK 350
P+ A ++G F +V ++ P VG V F +L DI A L +
Sbjct: 54 PTTPAELVGK-FLGYVSSLVEPS-KVGQFDQVLNLCLTEFENCYLEGN-DIHALAAKLLQ 110
Query: 351 EIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINE 410
E L K I N Y+T + R S++ L R + E
Sbjct: 111 ENDTTLVKTKELIKN---------YITARIMAKR-------PFDKKSNSAL---FRAVGE 151
Query: 411 G----FSI--GFTSVLIIVGSII----ELRRSYQAYNVMPSLSKAL 446
G +I G G+ ELR YQ Y L L
Sbjct: 152 GNAQLVAIFGGQ-------GNTDDYFEELRDLYQTY---HVLVGDL 187
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 6e-04
Identities = 65/508 (12%), Positives = 135/508 (26%), Gaps = 164/508 (32%)
Query: 8 NFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVS 67
+I L N + F K + R + + L P + +
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-------------LELRPAKNV-LID 156
Query: 68 GSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYI 127
G + G K + V + K+ I
Sbjct: 157 G----VLGSG---K------------------TWVALDV-----CLSYKV--QCKMDFKI 184
Query: 128 WWISLGF-----AILEAVIVACYSL----------PYSIYAASHSVK------------- 159
+W++L +LE + Y + +I HS++
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 160 -------HV----MVTAFLLVC---------------GAMTMSWICDTISESGFGQGSSL 193
+V AF L C A T + I
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 194 IICVGILTGYTETLYKML-SQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQ 252
+L Y + + L ++L ++ P L ++ + +
Sbjct: 305 ----SLLLKYLDCRPQDLPREVLTTN----PRRLSIIA--------ESIRDGLATWDNWK 348
Query: 253 YYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPS---ILASILGSPFW 309
+ + E S + + P+ + + L FP I +L W
Sbjct: 349 HVNCDKLTTIIESS----LN-----VLEPAEYRKMF--DRLSVFPPSAHIPTILLSL-IW 396
Query: 310 QHVKE-----ILNP--ETSVGARPWVYYTIY---AFFVFLFNIFDIANLPKEIADYLNKM 359
V + ++N + S+ + TI + + + L + I D+ N
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 360 GARIPNVKPGKATIEY--------LTKIQASTRFWGGLLLSILATSSTILD-HYLRR--I 408
+ +Y L I+ R L ++ LD +L +
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM---TLFRMV-----FLDFRFLEQKIR 508
Query: 409 NEGFSIGFTSVLIIVGSIIELRRSYQAY 436
++ + + ++ ++ +L+ Y+ Y
Sbjct: 509 HDSTAWNASGSIL--NTLQQLKF-YKPY 533
Score = 35.2 bits (80), Expect = 0.045
Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 51/168 (30%)
Query: 277 FNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFF 336
FN+ + +LTT + + A+ H L P+ + +
Sbjct: 262 FNL---SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--------LLLKY 310
Query: 337 VFLFNIFDIANLPKEIAD----YLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLS 392
+ + +LP+E+ L+ + I + G AT + + L +
Sbjct: 311 L---DC-RPQDLPREVLTTNPRRLSIIAESI---RDGLATWDNWKHVNCDK------LTT 357
Query: 393 ILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMP 440
I+ +S +L+ E R+ + +V P
Sbjct: 358 IIESSLNVLEPA-----------------------EYRKMFDRLSVFP 382
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.097
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 7/26 (26%)
Query: 356 LNKMGARI----PNVKPG---KATIE 374
L K+ A + + P KAT+E
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate
binding, T-state; HET: PPS; 2.60A {Penicillium
chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB:
1i2d_A*
Length = 573
Score = 31.1 bits (70), Expect = 0.81
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 3 KNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDY 62
K+ + L AES + R LI+ G F PL GF + DY
Sbjct: 11 KDLLARDAPRQAELAAEAESLPAVTLTERQLCDLELIMN---GGFSPLEGFMNQ---ADY 64
Query: 63 LS 64
Sbjct: 65 DR 66
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG,
heme, hydrogen peroxide, iron, metal-binding, organic
radical; HET: HEM; 2.0A {Mycobacterium tuberculosis}
SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A*
Length = 740
Score = 31.2 bits (71), Expect = 0.90
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 205 ETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWA 239
+ L + + +++ +S WWP G G I W
Sbjct: 74 DALTRDIEEVMTTSQPWWPADYGHYGPLFIRMAWH 108
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 483
Score = 30.6 bits (69), Expect = 1.1
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 337 VFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKI 379
V L ++IA + L+++G R+ G A + +
Sbjct: 206 VNLIGEYNIAGEFWHVLPLLDELGLRVLCTLAGDARYREVQTM 248
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A
{Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3
Length = 731
Score = 30.4 bits (69), Expect = 1.3
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 205 ETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVT 243
E + L +L+ SS WWP G G I W T
Sbjct: 62 EAVKSDLEELMTSSQDWWPADYGHYGPLFIRMAWHSAGT 100
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM
CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 533
Score = 29.9 bits (67), Expect = 2.0
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 337 VFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKI 379
+ + ++I E+ L K+G + G AT E +
Sbjct: 209 INVLGEYNIGGDAWEMDRVLEKIGYHVNATLTGDATYEKVQNA 251
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM;
2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3
Length = 720
Score = 29.7 bits (67), Expect = 2.4
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 207 LYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWA 239
L + L L+ S WWP G G I W
Sbjct: 62 LKQDLQALMTDSQDWWPADWGHYGGLMIRLTWH 94
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 28.5 bits (64), Expect = 5.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 345 IANLPKEIADYLNKMGARIPNVKPGKATI 373
I+NL K++A L + R+ V PGK T+
Sbjct: 136 ISNLAKDLARSLAVISVRVVEVIPGKTTV 164
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and
degradation of murein sacculus and peptidog infectious
diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Length = 454
Score = 28.2 bits (64), Expect = 5.3
Identities = 9/16 (56%), Positives = 13/16 (81%), Gaps = 3/16 (18%)
Query: 351 EI---ADYLNKMGARI 363
EI A++LN+MGAR+
Sbjct: 215 EIVDLANFLNQMGARV 230
>1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP:
a.45.1.1 c.47.1.5
Length = 221
Score = 28.0 bits (63), Expect = 5.5
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 93 IVASILMQVLCHIVP----SLVQLRKEGLDGHEKIKSYIWWISLGFAILEA 139
+ + VL I P ++++ +E ++ EK I+ GF LE
Sbjct: 99 VNYQAMSIVLSGIQPHQNLAVIRYIEEKINVEEKTAWVNNAITKGFTALEK 149
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase,
fosfomyc binding, transferase; 2.50A {Streptomyces
tendae}
Length = 479
Score = 28.3 bits (64), Expect = 5.7
Identities = 4/16 (25%), Positives = 7/16 (43%), Gaps = 3/16 (18%)
Query: 351 EI---ADYLNKMGARI 363
++ L +GA I
Sbjct: 220 DVTDMVTVLRDLGADI 235
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- binding, cell division, transmembrane,
inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB:
2j5p_A*
Length = 512
Score = 28.4 bits (64), Expect = 5.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 345 IANLPKEIADYLNKMGARIPNVKPGKATI 373
I+NL +++A L+ + R+ V PGK +
Sbjct: 89 ISNLSRDLARSLSTVAVRVVEVIPGKPYV 117
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A*
1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A*
3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Length = 492
Score = 28.2 bits (63), Expect = 5.9
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 337 VFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKI 379
V + ++I L +MG R G +I +
Sbjct: 223 VAIIGDYNIGGDAWSSRILLEEMGLRCVAQWSGDGSISEIELT 265
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral
membrane protein, prelami processing, ageing, progeria;
HET: PC1; 3.40A {Homo sapiens}
Length = 482
Score = 27.9 bits (61), Expect = 7.0
Identities = 29/173 (16%), Positives = 55/173 (31%), Gaps = 18/173 (10%)
Query: 78 AELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAIL 137
+ SF+ S IL L +P L +L Y SL F +L
Sbjct: 73 DKSTFSFWSGLYSETEGTLIL---LFGGIPYLWRLSGRFCGYAGFGPEYEITQSLVFLLL 129
Query: 138 EAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICV 197
+ A LP+S+Y + L ++ D I + +
Sbjct: 130 ATLFSALAGLPWSLYNTFVIEEKHGFNQQTL------GFFMKDAIKK---------FVVT 174
Query: 198 GILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVK 250
+ +L + ++ G + ++ L+ +VT++A + K
Sbjct: 175 QCILLPVSSLLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIYADYIAPLFDKFT 227
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP;
2.31A {Aquifex aeolicus}
Length = 546
Score = 28.0 bits (62), Expect = 7.3
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 20 AESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLS 64
+ +I +R + L+ + G F PL F +DY +
Sbjct: 4 IKYLKSIQISQRSVLDLELLAV---GAFTPLDRFMGE---EDYRN 42
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase;
inside-OUT alpha/beta barrel; 1.55A {Enterobacter
cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A*
3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A
1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A*
1uae_A* 3kqj_A* 3kr6_A* ...
Length = 419
Score = 27.8 bits (63), Expect = 7.7
Identities = 7/16 (43%), Positives = 11/16 (68%), Gaps = 3/16 (18%)
Query: 351 EI---ADYLNKMGARI 363
EI A++L +GA+I
Sbjct: 190 EIVDTANFLVALGAKI 205
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan,
structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex
aeolicus} PDB: 3swg_A*
Length = 425
Score = 27.8 bits (63), Expect = 7.8
Identities = 6/16 (37%), Positives = 9/16 (56%), Gaps = 3/16 (18%)
Query: 351 EI---ADYLNKMGARI 363
E+ + L KMGA +
Sbjct: 198 EVMDLIEVLKKMGAHV 213
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition,
oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB:
3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A
1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Length = 501
Score = 27.7 bits (62), Expect = 9.7
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 171 GAMTMSWICDTISESGFGQGSSLIICVGILTG 202
G MSWI DT + G I +TG
Sbjct: 172 GEREMSWIADTYAS---TIGHYDINAHACVTG 200
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.428
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,060,180
Number of extensions: 433798
Number of successful extensions: 1024
Number of sequences better than 10.0: 1
Number of HSP's gapped: 960
Number of HSP's successfully gapped: 38
Length of query: 451
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 354
Effective length of database: 3,993,456
Effective search space: 1413683424
Effective search space used: 1413683424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.4 bits)