RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 013035
         (451 letters)



>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 422

 Score =  173 bits (439), Expect = 7e-50
 Identities = 68/430 (15%), Positives = 141/430 (32%), Gaps = 60/430 (13%)

Query: 25  KSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSF 84
           +   + +L  T +++V+  I   I +     +        F            A    + 
Sbjct: 19  EITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQ--IPAIFEFWQT-------ITASRIGTL 69

Query: 85  FQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVAC 144
             LGI P + A I+MQ+L  +   ++Q+     +     +     +S+    +EAV+   
Sbjct: 70  ITLGIGPIVTAGIIMQLL--VGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVL--- 124

Query: 145 YSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGY- 203
           +    +    +  +  +++    +  G++ + ++ + +S+ G G G  L I  G+     
Sbjct: 125 FVGAGAFGILTPLLAFLVI--IQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIF 182

Query: 204 --TETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASA 261
                    L + L S ++  P +  +  +   + ++ +VV   C +V++     +    
Sbjct: 183 VGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGR---- 238

Query: 262 AREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEI------ 315
                 I       P         PV+    L A   +    L       +         
Sbjct: 239 ------IKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAV 292

Query: 316 ------------LNPETSVGARPWVYYTIYAFFVFLFNIFDIANL---PKEIADYLNKMG 360
                       L+   S      VY         +F IF +      PK +A  +  +G
Sbjct: 293 DGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLG 352

Query: 361 ARIPNVKPGKATIEY-LTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSV 419
             I   +  +  IE+ L +            +  LAT +  +         G   G T V
Sbjct: 353 MAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFI---------GALGGGTGV 403

Query: 420 LIIVGSIIEL 429
           L+ V  +  +
Sbjct: 404 LLTVSIVYRM 413


>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia
           pseudomallei [TaxId: 28450]}
          Length = 406

 Score = 30.8 bits (69), Expect = 0.36
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 205 ETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWA 239
             + + L  L+ +S  WWP   G  G   I   W 
Sbjct: 44  AAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWH 78


>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 406

 Score = 30.4 bits (68), Expect = 0.50
 Identities = 13/39 (33%), Positives = 16/39 (41%)

Query: 205 ETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVT 243
           E +   L +L+ SS  WWP   G  G   I   W    T
Sbjct: 45  EAVKSDLEELMTSSQDWWPADYGHYGPLFIRMAWHSAGT 83


>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 410

 Score = 30.0 bits (67), Expect = 0.68
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 205 ETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVT 243
           + L + + +++ +S  WWP   G  G   I   W    T
Sbjct: 49  DALTRDIEEVMTTSQPWWPADYGHYGPLFIRMAWHAAGT 87


>d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId:
           562]}
          Length = 343

 Score = 28.8 bits (63), Expect = 1.5
 Identities = 4/48 (8%), Positives = 12/48 (25%)

Query: 326 PWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATI 373
               +           +F+  N  +    + +  G +   +      I
Sbjct: 262 CAGCFNAPTALGSYATVFEEMNALQHFEAFCSVNGPQFYGLPVNDTFI 309


>d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga
           maritima [TaxId: 2336]}
          Length = 99

 Score = 24.8 bits (54), Expect = 9.0
 Identities = 6/33 (18%), Positives = 16/33 (48%)

Query: 348 LPKEIADYLNKMGARIPNVKPGKATIEYLTKIQ 380
           LP  + ++LN++   + N    +   + L ++ 
Sbjct: 12  LPTLLEEFLNEVEKMLKNQVNTRRIHQLLKELD 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.428 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,726,803
Number of extensions: 80376
Number of successful extensions: 260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 13
Length of query: 451
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 363
Effective length of database: 1,199,356
Effective search space: 435366228
Effective search space used: 435366228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.8 bits)