Query 013037
Match_columns 451
No_of_seqs 179 out of 1349
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 23:46:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 4E-130 8E-135 937.8 32.1 438 1-445 1-438 (443)
2 PLN00221 tubulin alpha chain; 100.0 4E-113 9E-118 883.0 34.4 450 1-451 1-450 (450)
3 PTZ00335 tubulin alpha chain; 100.0 1E-111 3E-116 871.9 34.5 442 1-442 1-442 (448)
4 PTZ00010 tubulin beta chain; P 100.0 1E-107 2E-112 843.3 33.2 429 1-439 1-429 (445)
5 PLN00220 tubulin beta chain; P 100.0 2E-107 4E-112 843.9 33.5 441 1-451 1-445 (447)
6 cd02186 alpha_tubulin The tubu 100.0 5E-107 1E-111 837.0 32.5 434 2-435 1-434 (434)
7 PLN00222 tubulin gamma chain; 100.0 7E-106 1E-110 829.4 33.8 434 1-442 2-448 (454)
8 cd02188 gamma_tubulin Gamma-tu 100.0 1E-105 2E-110 824.2 31.1 423 2-432 1-431 (431)
9 cd02187 beta_tubulin The tubul 100.0 6E-105 1E-109 820.0 33.4 424 2-435 1-424 (425)
10 PTZ00387 epsilon tubulin; Prov 100.0 2E-104 5E-109 818.3 32.9 419 1-440 1-454 (465)
11 KOG1374 Gamma tubulin [Cytoske 100.0 7E-101 2E-105 736.6 29.0 431 1-439 2-443 (448)
12 cd02189 delta_tubulin The tubu 100.0 2.7E-97 6E-102 767.0 32.8 412 4-433 2-445 (446)
13 cd02190 epsilon_tubulin The tu 100.0 1.6E-97 4E-102 753.9 29.0 379 2-435 1-379 (379)
14 cd06059 Tubulin The tubulin su 100.0 1.5E-89 3.2E-94 699.8 30.2 381 3-434 1-382 (382)
15 KOG1376 Alpha tubulin [Cytoske 100.0 6.1E-84 1.3E-88 618.1 18.4 406 1-429 1-406 (407)
16 KOG1375 Beta tubulin [Cytoskel 100.0 5.4E-70 1.2E-74 524.8 14.9 344 45-436 7-350 (369)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 4.1E-64 8.9E-69 503.8 24.6 328 3-381 1-328 (328)
18 cd06060 misato Human Misato sh 100.0 3.5E-48 7.7E-53 400.6 28.8 414 2-434 1-493 (493)
19 PF00091 Tubulin: Tubulin/FtsZ 100.0 4.4E-50 9.5E-55 379.1 10.8 215 3-225 1-215 (216)
20 smart00864 Tubulin Tubulin/Fts 100.0 1.3E-36 2.8E-41 282.0 9.9 185 51-246 3-192 (192)
21 KOG2530 Members of tubulin/Fts 100.0 3E-33 6.4E-38 275.5 12.1 239 1-257 1-324 (483)
22 cd02202 FtsZ_type2 FtsZ is a G 100.0 1.2E-31 2.6E-36 269.4 15.2 214 1-262 1-226 (349)
23 cd02191 FtsZ FtsZ is a GTPase 99.9 1.8E-27 4E-32 234.7 12.6 205 4-260 3-207 (303)
24 TIGR00065 ftsZ cell division p 99.9 1.7E-25 3.7E-30 224.1 12.3 206 3-260 19-224 (349)
25 cd02201 FtsZ_type1 FtsZ is a G 99.9 4.1E-25 9E-30 218.9 12.5 209 4-263 3-211 (304)
26 PF03953 Tubulin_C: Tubulin C- 99.9 6.9E-24 1.5E-28 183.4 9.9 126 263-393 1-126 (126)
27 PRK13018 cell division protein 99.9 3.6E-23 7.7E-28 208.2 13.4 205 4-260 31-235 (378)
28 PF14881 Tubulin_3: Tubulin do 99.9 7.2E-22 1.6E-26 180.2 11.3 149 84-244 17-180 (180)
29 PRK09330 cell division protein 99.9 1.1E-21 2.4E-26 197.5 10.7 207 3-260 15-221 (384)
30 PF10644 Misat_Tub_SegII: Misa 99.5 5.2E-15 1.1E-19 125.5 5.0 70 2-79 1-74 (115)
31 COG0206 FtsZ Cell division GTP 99.3 6.5E-12 1.4E-16 124.4 12.0 152 98-263 70-221 (338)
32 smart00865 Tubulin_C Tubulin/F 98.4 1.7E-07 3.8E-12 79.5 2.4 114 248-392 1-119 (120)
33 PF13809 Tubulin_2: Tubulin li 97.6 0.00096 2.1E-08 67.6 13.4 103 94-196 100-219 (345)
34 PRK14484 phosphotransferase ma 71.1 4.5 9.8E-05 34.7 3.3 42 116-160 42-83 (124)
35 PF06908 DUF1273: Protein of u 66.4 26 0.00057 31.9 7.5 110 114-241 27-136 (177)
36 PF12953 DUF3842: Domain of un 65.2 5.9 0.00013 34.0 2.7 29 143-171 6-35 (131)
37 PF03610 EIIA-man: PTS system 64.2 9.3 0.0002 32.0 3.8 33 114-146 39-71 (116)
38 PLN02847 triacylglycerol lipas 57.5 37 0.0008 36.9 7.6 115 49-170 153-287 (633)
39 cd00006 PTS_IIA_man PTS_IIA, P 56.0 16 0.00035 30.8 4.0 31 115-145 40-70 (122)
40 TIGR00824 EIIA-man PTS system, 55.9 17 0.00037 30.6 4.0 32 115-146 41-72 (116)
41 cd00741 Lipase Lipase. Lipase 44.4 38 0.00082 29.5 4.6 64 106-173 2-65 (153)
42 TIGR02364 dha_pts dihydroxyace 40.3 28 0.0006 29.9 2.9 41 116-159 42-84 (125)
43 PRK09461 ansA cytoplasmic aspa 37.9 98 0.0021 31.2 6.9 95 110-211 63-157 (335)
44 PF12210 Hrs_helical: Hepatocy 36.5 29 0.00062 28.2 2.2 54 377-435 27-89 (96)
45 PRK13660 hypothetical protein; 34.8 1.8E+02 0.004 26.6 7.5 112 114-243 27-138 (182)
46 cd00519 Lipase_3 Lipase (class 31.4 50 0.0011 30.9 3.5 63 103-169 99-161 (229)
47 PF00710 Asparaginase: Asparag 30.5 1.7E+02 0.0038 29.1 7.3 92 111-210 55-147 (313)
48 PF01713 Smr: Smr domain; Int 28.9 2.1E+02 0.0046 22.0 6.1 55 116-173 9-69 (83)
49 PF03283 PAE: Pectinacetyleste 28.3 1.4E+02 0.003 30.5 6.2 51 107-163 132-183 (361)
50 cd00411 Asparaginase Asparagin 27.8 1.9E+02 0.0042 28.9 7.1 92 111-209 61-154 (323)
51 PF08259 Periviscerokin: Periv 27.7 27 0.00058 16.8 0.4 8 257-264 3-10 (11)
52 COG0572 Udk Uridine kinase [Nu 27.6 60 0.0013 30.7 3.2 27 137-164 9-35 (218)
53 PF02879 PGM_PMM_II: Phosphogl 27.2 47 0.001 26.9 2.1 27 133-159 20-46 (104)
54 PRK15088 PTS system mannose-sp 26.3 81 0.0017 31.7 4.0 33 114-146 41-73 (322)
55 COG0159 TrpA Tryptophan syntha 25.6 1.9E+02 0.0042 28.2 6.3 77 120-215 161-242 (265)
56 PF01764 Lipase_3: Lipase (cla 25.5 58 0.0013 27.4 2.5 47 113-163 45-91 (140)
57 PF03141 Methyltransf_29: Puta 25.3 1.3E+02 0.0029 32.0 5.4 35 132-175 115-149 (506)
58 COG1929 Glycerate kinase [Carb 25.0 1.5E+02 0.0033 30.2 5.5 82 112-210 216-301 (378)
59 PF02353 CMAS: Mycolic acid cy 23.7 1.3E+02 0.0028 29.4 4.9 64 101-171 29-93 (273)
60 COG2156 KdpC K+-transporting A 23.2 1.5E+02 0.0033 27.2 4.7 80 69-153 46-134 (190)
61 CHL00200 trpA tryptophan synth 22.5 2.2E+02 0.0047 27.7 6.1 67 120-204 158-231 (263)
62 COG1528 Ftn Ferritin-like prot 21.8 52 0.0011 29.7 1.5 52 379-436 92-145 (167)
63 KOG3178 Hydroxyindole-O-methyl 21.7 77 0.0017 32.0 2.8 41 124-169 167-207 (342)
64 PTZ00489 glutamate 5-kinase; P 21.5 3.7E+02 0.008 26.1 7.5 49 157-207 87-135 (264)
65 TIGR02153 gatD_arch glutamyl-t 21.5 2.7E+02 0.0059 28.9 6.9 90 111-207 121-211 (404)
66 PF09370 TIM-br_sig_trns: TIM- 21.2 53 0.0011 32.0 1.5 32 117-156 2-33 (268)
67 TIGR00262 trpA tryptophan synt 21.1 2.4E+02 0.0052 27.2 6.1 75 120-213 154-234 (256)
68 COG4474 Uncharacterized protei 20.7 2.9E+02 0.0063 25.1 5.9 69 103-176 12-82 (180)
69 PF02020 W2: eIF4-gamma/eIF5/e 20.4 65 0.0014 25.3 1.6 30 381-410 18-49 (84)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=3.5e-130 Score=937.79 Aligned_cols=438 Identities=60% Similarity=1.057 Sum_probs=422.8
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccc
Q 013037 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (451)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~ 80 (451)
|||||+||+||||||||.+||+++|.||||.++|..+...+ .+.++.++||+|.+.++||||||+||+||+||+.++.
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~--~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~ 78 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSD--EGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRN 78 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcc--cccccccceeeecCCCccccceEEEecCcchHhhhcc
Confidence 99999999999999999999999999999999999766444 3568999999999999999999999999999999999
Q ss_pred ccccccCCccceecccccccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhh
Q 013037 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~de 160 (451)
|+++.+|+|+|++.+++|+|||||+|+|++|+++.|+++|+|||++|.||.||||+++||+|||||||+|+.|+|.|++|
T Consensus 79 g~y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~e 158 (443)
T COG5023 79 GPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREE 158 (443)
T ss_pred CccccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhhccc
Q 013037 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (451)
Q Consensus 161 y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (451)
||||.+.+|+|+|.++.++++|||||++|+++.|.|+||+++++||++|+++|.+.+++++|+|.++|++||++|+++|+
T Consensus 159 ypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTt 238 (443)
T COG5023 159 YPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTT 238 (443)
T ss_pred cchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhh
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhcCCCCCCcccccccccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcccceecccc
Q 013037 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (451)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~R 320 (451)
++||||++|.||++|.+||+|+||+||+.++|+|+++..+..+++.++.++++++|+++|+|++|+|++++|+++++++|
T Consensus 239 slRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~r 318 (443)
T COG5023 239 SLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFR 318 (443)
T ss_pred eeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCChhhHHHHHHhhhhcCccccccCCCCCCceeEeccCCccCCCCCcccccceeEeecCChhhHHHHHHHHHHHHHHhh
Q 013037 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA 400 (451)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~ 400 (451)
|++.++++++++..++.|++..|++|+|+++++++|..+|.. ..+.+.++|+|+|+|+|.+.|+++.++|++||+
T Consensus 319 G~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~-----~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~ 393 (443)
T COG5023 319 GDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSE-----PAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFK 393 (443)
T ss_pred cCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcc-----cccceeeeEeecCcHHHHHHHHHhhhHHHHHHH
Confidence 999999999999999999999999999999999999999832 334589999999999999999999999999999
Q ss_pred cccceecccccccChhhHHHHHHHHHHHHHHHHHHccCCCCCCCC
Q 013037 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEDG 445 (451)
Q Consensus 401 ~kAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~~~~~~~~~ 445 (451)
||||||||+++||||+||.||++++++|.++|++++++..++++.
T Consensus 394 krAFlhwY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~~ 438 (443)
T COG5023 394 KRAFLHWYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEE 438 (443)
T ss_pred hhHHHHHHhhccCcccchhhHHHHHHHHHHHHHHhccccccchhh
Confidence 999999999999999999999999999999999998776665543
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=4.3e-113 Score=883.02 Aligned_cols=450 Identities=98% Similarity=1.506 Sum_probs=421.5
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccc
Q 013037 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (451)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~ 80 (451)
|||||+||+||||||||.+||+++++||+++++|....+.......+..++||+|..+++|+||||+||+||++|++++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 99999999999999999999999999999998887543321111245788999999999999999999999999999999
Q ss_pred ccccccCCccceecccccccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhh
Q 013037 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~de 160 (451)
++++++|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhhccc
Q 013037 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (451)
Q Consensus 161 y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (451)
||++.+.+++|+|+...+++++++||++|++++|.+++|+++++||++|.++|.+.++++.|+|+++|++||++|+++|+
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~ 240 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccc
Confidence 99999999999999766789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhcCCCCCCcccccccccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcccceecccc
Q 013037 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (451)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~R 320 (451)
++||||.++.||+++++||||||++||++++++|+++.....+..+++.+|++++|++++++++++|+.++||++++++|
T Consensus 241 s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~R 320 (450)
T PLN00221 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYR 320 (450)
T ss_pred cccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHc
Confidence 99999999999999999999999999999999999987777788899999999999999999999999999999999999
Q ss_pred CcCChhhHHHHHHhhhhcCccccccCCCCCCceeEeccCCccCCCCCcccccceeEeecCChhhHHHHHHHHHHHHHHhh
Q 013037 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA 400 (451)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~ 400 (451)
|++.+.++.+.+..++.+++..|++|+|+++++++|.++|...++..+.+.++++++++|+|+|..+|++++++|++||+
T Consensus 321 G~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~~~f~~mf~ 400 (450)
T PLN00221 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYA 400 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999988888888999999999999999999987777666667789999999999999999999999999999
Q ss_pred cccceecccccccChhhHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCC
Q 013037 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEDGDEGDEY 451 (451)
Q Consensus 401 ~kAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~~~~~~~~~~~~~~~ 451 (451)
||||||||+++||||+||.||+++|++|+++|+++..+..++ .+||+.||
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~-~~~~~~~~ 450 (450)
T PLN00221 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEG-EGDEGEEY 450 (450)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhcccccc-cccccccC
Confidence 999999999999999999999999999999999997665554 44446665
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.2e-111 Score=871.89 Aligned_cols=442 Identities=94% Similarity=1.462 Sum_probs=416.7
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccc
Q 013037 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (451)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~ 80 (451)
|||||+||+||||||||.+||+++++||+++++|....+.......+..++||+|..+++|+||||+||+||++|++++.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 99999999999999999999999999999998887643322111245788999999999999999999999999999999
Q ss_pred ccccccCCccceecccccccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhh
Q 013037 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~de 160 (451)
++++.+|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 98888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhhccc
Q 013037 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (451)
Q Consensus 161 y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (451)
||++++++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||++|+++|+
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~ 240 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhccccc
Confidence 99999999999999766799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhcCCCCCCcccccccccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcccceecccc
Q 013037 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (451)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~R 320 (451)
++||||.++.|++++++||||||++||++++++|+++.....++.+++.+|+.++|+++++++.++|+.++||++++++|
T Consensus 241 ~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~R 320 (448)
T PTZ00335 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYR 320 (448)
T ss_pred ccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHc
Confidence 99999999999999999999999999999999999987777788999999999999999999999999999999999999
Q ss_pred CcCChhhHHHHHHhhhhcCccccccCCCCCCceeEeccCCccCCCCCcccccceeEeecCChhhHHHHHHHHHHHHHHhh
Q 013037 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA 400 (451)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~ 400 (451)
|++.+.++.+.+..++.+++..|++|+|+++++++|.++|...++..+.+.++++++++|+|+|..+|++++++|++||+
T Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf~ 400 (448)
T PTZ00335 321 GDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYA 400 (448)
T ss_pred CCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999998988899999999999999999999988776666666789999999999999999999999999999
Q ss_pred cccceecccccccChhhHHHHHHHHHHHHHHHHHHccCCCCC
Q 013037 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEG 442 (451)
Q Consensus 401 ~kAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~~~~~~ 442 (451)
||||||||+++||||+||.||+++|++|+++|+++..+.++|
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~ 442 (448)
T PTZ00335 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADE 442 (448)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 999999999999999999999999999999999997554444
No 4
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=1.1e-107 Score=843.35 Aligned_cols=429 Identities=43% Similarity=0.838 Sum_probs=407.7
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccc
Q 013037 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (451)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~ 80 (451)
|||||+||+||||||||.+||+++++||++.++|.....++. ..+..++||+|+.+++|+||||+||+||++|+.++.
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~--~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~ 78 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDL--QLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRA 78 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcc--cccccceeecccCCCceEEeeeeccCChhhhhhhcc
Confidence 999999999999999999999999999999988876443321 235678999999999999999999999999999998
Q ss_pred ccccccCCccceecccccccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhh
Q 013037 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~de 160 (451)
++++.+|+|++++.+++|+|||||+|||..|++..++++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus 79 ~~~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~de 158 (445)
T PTZ00010 79 GPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREE 158 (445)
T ss_pred cchhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhh
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhhccc
Q 013037 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (451)
Q Consensus 161 y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (451)
||++.+.+++|+|+...+++++++||++|++++|.+++|++++|||++|+++|.+.++++.|+|.++|++||+.|+++|+
T Consensus 159 y~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~ 238 (445)
T PTZ00010 159 YPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTC 238 (445)
T ss_pred CCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhcccccc
Confidence 99999999999999776889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhcCCCCCCcccccccccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcccceecccc
Q 013037 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (451)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~R 320 (451)
++||||.+|.||+++.+||||||++||++++++|+.+.....++.+++.+|++++|++++++.+++|+.++|+++++++|
T Consensus 239 ~~Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~R 318 (445)
T PTZ00010 239 CLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFR 318 (445)
T ss_pred ceecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHc
Confidence 99999999999999999999999999999999999987777788999999999999999999999999999999999999
Q ss_pred CcCChhhHHHHHHhhhhcCccccccCCCCCCceeEeccCCccCCCCCcccccceeEeecCChhhHHHHHHHHHHHHHHhh
Q 013037 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA 400 (451)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~ 400 (451)
|++.+.++.+.+..++.++++.|++|+|+++++++|.++|... ++++++++|+|+|..+|+++.++|++||+
T Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~--------~~s~~~lsNstsi~~~~~~i~~~f~~m~~ 390 (445)
T PTZ00010 319 GRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGL--------KMSVTFIGNSTAIQEMFRRVGEQFTAMFR 390 (445)
T ss_pred CCCCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcCc--------cceEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999998888888999999999999999999887543 68899999999999999999999999999
Q ss_pred cccceecccccccChhhHHHHHHHHHHHHHHHHHHccCC
Q 013037 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES 439 (451)
Q Consensus 401 ~kAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~~~ 439 (451)
||||||||+++||||+||.||+++|++|+++|+++....
T Consensus 391 rrAflh~Y~~eGmee~ef~EA~~~l~~li~~Y~~~~~~~ 429 (445)
T PTZ00010 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 (445)
T ss_pred cCchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999987554
No 5
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=1.7e-107 Score=843.90 Aligned_cols=441 Identities=42% Similarity=0.838 Sum_probs=411.3
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccc
Q 013037 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (451)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~ 80 (451)
|||||+||+||||||||.+||+++++||++.++|......+. ..+..++||+|.++++|+||||+||+||++|++++.
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~--~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~ 78 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDL--QLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRS 78 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCccc--ccccccceeccCCCCcccceeEecCCcHHHHHHHhc
Confidence 999999999999999999999999999999888866443321 235678999999999999999999999999999999
Q ss_pred ccccccCCccceecccccccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhh
Q 013037 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~de 160 (451)
++++.+|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|+|+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~ 158 (447)
T PLN00220 79 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (447)
T ss_pred CccccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHh
Confidence 98888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhhccc
Q 013037 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (451)
Q Consensus 161 y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (451)
||++.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||+.|+++|+
T Consensus 159 y~~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~ 238 (447)
T PLN00220 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (447)
T ss_pred ccccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccch
Confidence 99999999999999767899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhcCCCCCCcccccccccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcccceecccc
Q 013037 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (451)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~R 320 (451)
++||||.++.++.++.++|||||++||+.++++|+.+.....++.+++.+++++++++++++.+++|+.++|+++++++|
T Consensus 239 slRFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~R 318 (447)
T PLN00220 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFR 318 (447)
T ss_pred hhccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHc
Confidence 99999999999999999999999999999999999887766788999999999999999999999999999999999999
Q ss_pred CcCChhhHHHHHHhhhhcCccccccCCCCCCceeEeccCCccCCCCCcccccceeEeecCChhhHHHHHHHHHHHHHHhh
Q 013037 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA 400 (451)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~ 400 (451)
|++.+.++.+.+..++.++++.|++|+|+++++++|.++|... ++++++|+|+|+|..+|++++++|++||+
T Consensus 319 G~~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~--------~~s~~~l~N~t~i~~~~~~i~~~f~~m~~ 390 (447)
T PLN00220 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGL--------KMASTFIGNSTSIQEMFRRVSEQFTAMFR 390 (447)
T ss_pred CCCCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCc--------ceeeEEecCchHHHHHHHHHHHHHHHHHh
Confidence 9999999999998888888899999999999999999887543 67899999999999999999999999999
Q ss_pred cccceecccccccChhhHHHHHHHHHHHHHHHHHHccCC----CCCCCCCCCCCC
Q 013037 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES----AEGEDGDEGDEY 451 (451)
Q Consensus 401 ~kAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~~~----~~~~~~~~~~~~ 451 (451)
||||||||+++|||++||.||+++|++|+++|+++.... +|-+|+||+.||
T Consensus 391 rkAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~~~~~~~~~~~~~~~~~~~~~ 445 (447)
T PLN00220 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEEEEEY 445 (447)
T ss_pred cCcchhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhccccccccccccccchhc
Confidence 999999999999999999999999999999999887432 222455555554
No 6
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=4.7e-107 Score=837.05 Aligned_cols=434 Identities=88% Similarity=1.423 Sum_probs=410.5
Q ss_pred eeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeeccccc
Q 013037 2 RECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG 81 (451)
Q Consensus 2 ~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~~ 81 (451)
||||+||+||||||||.+||+++++||+++++|......+.....+.+++||+|+.+++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 79999999999999999999999999999988865443221113457899999999999999999999999999999998
Q ss_pred cccccCCccceecccccccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhc
Q 013037 82 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 161 (451)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey 161 (451)
+++.+|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|+|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhhcccc
Q 013037 162 GKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 241 (451)
Q Consensus 162 ~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 241 (451)
|++++++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.++++.++|+++|++||++|+++|++
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~ 240 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccc
Confidence 99999999999997667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccchhhhhcCCCCCCcccccccccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcccceeccccC
Q 013037 242 LRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRG 321 (451)
Q Consensus 242 ~r~~~~~~~~l~~~~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~RG 321 (451)
+||+|..+.|+++++++|||||++||++++++|+++.....++.+++.+|++++|+++++|+.++|+.++||++++++||
T Consensus 241 ~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG 320 (434)
T cd02186 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG 320 (434)
T ss_pred eecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcC
Confidence 99999999999999999999999999999999999877777889999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHhhhhcCccccccCCCCCCceeEeccCCccCCCCCcccccceeEeecCChhhHHHHHHHHHHHHHHhhc
Q 013037 322 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAK 401 (451)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~~ 401 (451)
++.+.++.+.+..++.++...|++|+|+++++++|+++|...+.+.+.+.++++++++|+|+|.++|++++++|++||+|
T Consensus 321 ~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~~f~~mf~r 400 (434)
T cd02186 321 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSK 400 (434)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHHHHHHHHhh
Confidence 99999999999888888889999999999999999999887766666677899999999999999999999999999999
Q ss_pred ccceecccccccChhhHHHHHHHHHHHHHHHHHH
Q 013037 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435 (451)
Q Consensus 402 kAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~ 435 (451)
|||||||+++||||+||.||+++|++|+++|+++
T Consensus 401 kAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~ 434 (434)
T cd02186 401 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 434 (434)
T ss_pred cchhhhhcCcCCchHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999863
No 7
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=6.9e-106 Score=829.38 Aligned_cols=434 Identities=32% Similarity=0.587 Sum_probs=401.9
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccc
Q 013037 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (451)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~ 80 (451)
|||||+||+||||||||.+||+++++||+++++|....+.+ ...+..++||+|+++++|+||||+||+||++|++++.
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~ 79 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAT--QGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQN 79 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccc--cccccccceeEEcCCCcccceeeecCCCcchhhhhcc
Confidence 69999999999999999999999999999988887643322 1245788999999999999999999999999999999
Q ss_pred ccccccCCccceecccc--cccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhh
Q 013037 81 GTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLS 158 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~--g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~ 158 (451)
++++.+|+|++++.+++ |+|||||+||+ .|++..|+++|+||+++|.||++|||+++||++||||||+|++|+|.|+
T Consensus 80 ~~~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~ 158 (454)
T PLN00222 80 SEYRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALN 158 (454)
T ss_pred CccccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHH
Confidence 88889999999999886 69999999955 7999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcceeEEEEecCCC-CCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhh
Q 013037 159 VDYGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISS 237 (451)
Q Consensus 159 dey~~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~ 237 (451)
|+||++.+++++|+|+.. .+++++++||++|+|++|.+++|+++++||++|+++|.+.++++.|+|+++|++||++|++
T Consensus 159 d~y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~ 238 (454)
T PLN00222 159 DRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSA 238 (454)
T ss_pred hhcCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCC
Confidence 999999999999999863 4688999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccchhhhhcCCCCCCcccccccccccccccc-cccccccCHHHHHHhhcCCCCCCcccCCCC-----Cc
Q 013037 238 LTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAE-KAFHEQLSVAEITNSAFEPSSMMAKCDPRH-----GK 311 (451)
Q Consensus 238 ~t~~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~s~~Pl~~~~-~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~-----~~ 311 (451)
+|+++||||.+|.||+++.+||||||++||++++++|+.+.. ...++..++.++++++|++++++..++|+. ++
T Consensus 239 ~T~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k 318 (454)
T PLN00222 239 STTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAK 318 (454)
T ss_pred cccccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccc
Confidence 999999999999999999999999999999999999997652 345678899999999999999999998887 99
Q ss_pred ccceeccccCcCChhhHHHHHHhhhhcCccccccCCCCCCceeEeccCCccCCCCCcccccceeEeecCChhhHHHHHHH
Q 013037 312 YMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRI 391 (451)
Q Consensus 312 ~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l 391 (451)
||++++++||++.+.++.+.+..++.++++.|++|+|+++++++|.++|...+. .+.++++|+|+|+|..+|+++
T Consensus 319 ~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~~-----~~~s~~~lsNst~I~~~f~~i 393 (454)
T PLN00222 319 YISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTA-----HRVSGLMLANHTSIRHLFSKC 393 (454)
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCCC-----CceEEEEEeCCHHHHHHHHHH
Confidence 999999999999999999999999988889999999999999999988764321 267899999999999999999
Q ss_pred HHHHHHHhhcccceecccccccC----hhhHHHHHHHHHHHHHHHHHHccCCCCC
Q 013037 392 DHKFDLMYAKRAFVHWYVGEGME----EGEFSEAREDLAALEKDYEEVGAESAEG 442 (451)
Q Consensus 392 ~~~~~~m~~~kAflH~Y~~~Gme----e~eF~Ea~~~l~~li~~Y~~~~~~~~~~ 442 (451)
.++|++||+||||||||+++||+ ++||.||+++|++|+++|++++..+.+|
T Consensus 394 ~~~f~~mf~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~~~y~~ 448 (454)
T PLN00222 394 LSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESPDYIK 448 (454)
T ss_pred HHHHHHHHhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999993 8999999999999999999987555544
No 8
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=9.7e-106 Score=824.19 Aligned_cols=423 Identities=36% Similarity=0.668 Sum_probs=398.1
Q ss_pred eeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeeccccc
Q 013037 2 RECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG 81 (451)
Q Consensus 2 ~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~~ 81 (451)
||||+||+||||||||.+||+++++||+++++|..+.+.+ ...+..++||+|..+++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~ 78 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFAT--DGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNS 78 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCcc--ccccccceeEEECCCCccCCcceeccCCcchhhhhhcC
Confidence 7999999999999999999999999999998887654322 13457889999999999999999999999999999999
Q ss_pred cccccCCccceecccc--cccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhh
Q 013037 82 TYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSV 159 (451)
Q Consensus 82 ~~~~~~~~~~~~~~~~--g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d 159 (451)
+++.+|+|++++.+++ |+|||||+||+ .|++..|+++|+||+++|+||++|||+++||++||||||+|++|+|+|+|
T Consensus 79 ~~~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d 157 (431)
T cd02188 79 EYRNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLND 157 (431)
T ss_pred ccccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHh
Confidence 8888999999999887 99999999955 69999999999999999999999999999999999999999999999999
Q ss_pred hcCCcceeEEEEecCCCC-CCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhhc
Q 013037 160 DYGKKSKLGFTVYPSPQV-STSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL 238 (451)
Q Consensus 160 ey~~~~i~~~~v~P~~~~-~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~ 238 (451)
+||++.+++++|+|+... +++++++||++|++++|.+++|+++++||++|.++|.+.+++..++|+++|++||+.|+++
T Consensus 158 ~y~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~ 237 (431)
T cd02188 158 RYPKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSAS 237 (431)
T ss_pred HcCcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCc
Confidence 999999999999998753 4889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccchhhhhcCCCCCCcccccccccccccccc-cccccccCHHHHHHhhcCCCCCCcccCC-CCCccccee
Q 013037 239 TASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAE-KAFHEQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACC 316 (451)
Q Consensus 239 t~~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~s~~Pl~~~~-~~~~~~~~~~~l~~~~~~~~n~~~~~~~-~~~~~ls~~ 316 (451)
|+++||||.+|.|+.++++||||||++||++++++|+.+.. ...++..++.+|++.+|+++|+|+.++| +.++|||++
T Consensus 238 t~~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~ 317 (431)
T cd02188 238 TTTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISIL 317 (431)
T ss_pred ccceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHH
Confidence 99999999999999999999999999999999999999877 5778889999999999999999999999 889999999
Q ss_pred ccccCcCChhhHHHHHHhhhhcCccccccCCCCCCceeEeccCCccCCCCCcccccceeEeecCChhhHHHHHHHHHHHH
Q 013037 317 LMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFD 396 (451)
Q Consensus 317 ~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~ 396 (451)
+++||++.+.++.+.+.+++.+.++.|++|+|+++++++|.++|...++ .+.++++++|+|+|.++|+++.++|+
T Consensus 318 ~~~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~-----~~~s~~~lsNst~I~~~f~~i~~kf~ 392 (431)
T cd02188 318 NIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTA-----HRVSGLMLANHTSIASLFERILKQFD 392 (431)
T ss_pred HHHcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCC-----CceeEEEecCChHHHHHHHHHHHHHH
Confidence 9999999999999999999888888899999999999999988865332 25789999999999999999999999
Q ss_pred HHhhcccceecccccccC---hhhHHHHHHHHHHHHHHH
Q 013037 397 LMYAKRAFVHWYVGEGME---EGEFSEAREDLAALEKDY 432 (451)
Q Consensus 397 ~m~~~kAflH~Y~~~Gme---e~eF~Ea~~~l~~li~~Y 432 (451)
+||+||||||||+++||| ++||.||+++|++|+++|
T Consensus 393 ~mf~krAflH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 393 KLRKRRAFLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred HHHhhCchhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 999999999999999999 999999999999999998
No 9
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=6.3e-105 Score=819.97 Aligned_cols=424 Identities=43% Similarity=0.847 Sum_probs=401.8
Q ss_pred eeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeeccccc
Q 013037 2 RECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG 81 (451)
Q Consensus 2 ~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~~ 81 (451)
||||+||+||||||||.+||+++++||++.++|......+. ..+..++||+|..+++|+||||+||+||++++.++.+
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~--~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~ 78 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDL--QLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSG 78 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccc--cccccceeEEecCCCceeeeeeeccCChhhhhhhhcC
Confidence 79999999999999999999999999999888765433221 2356789999999999999999999999999999888
Q ss_pred cccccCCccceecccccccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhc
Q 013037 82 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 161 (451)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey 161 (451)
+++.+|+|++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+|
T Consensus 79 ~~~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y 158 (425)
T cd02187 79 PFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEY 158 (425)
T ss_pred cccceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhhcccc
Q 013037 162 GKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 241 (451)
Q Consensus 162 ~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 241 (451)
|++.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||++|+++|++
T Consensus 159 ~~~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s 238 (425)
T cd02187 159 PDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTC 238 (425)
T ss_pred CCcceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhcccccccee
Confidence 99999999999987666899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccchhhhhcCCCCCCcccccccccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcccceeccccC
Q 013037 242 LRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRG 321 (451)
Q Consensus 242 ~r~~~~~~~~l~~~~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~RG 321 (451)
+||||.+|.||.++++||||||++||++++++|+++.....++.+++.+|++++|++++++..++|+.++||++++++||
T Consensus 239 ~Rfpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG 318 (425)
T cd02187 239 LRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRG 318 (425)
T ss_pred eecCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcC
Confidence 99999999999999999999999999999999999877677888999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHhhhhcCccccccCCCCCCceeEeccCCccCCCCCcccccceeEeecCChhhHHHHHHHHHHHHHHhhc
Q 013037 322 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAK 401 (451)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~~ 401 (451)
++.+.++.+.+.+++.++...|++|+|+++++++|.++|... ++++++++|+|+|.++|++++++|++||+|
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~--------~~s~~~l~N~t~i~~~~~~i~~~f~~m~~k 390 (425)
T cd02187 319 RVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGL--------KMSATFIGNSTAIQELFKRISEQFTAMFRR 390 (425)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCCc--------ceeEEEecCCcHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998888899999999999999999877532 688999999999999999999999999999
Q ss_pred ccceecccccccChhhHHHHHHHHHHHHHHHHHH
Q 013037 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435 (451)
Q Consensus 402 kAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~ 435 (451)
|||||||+++||||+||.||+++|++|+++|+++
T Consensus 391 kAflh~Y~~~G~ee~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 391 KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred CcchhhhhccCCchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999986
No 10
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=2.4e-104 Score=818.27 Aligned_cols=419 Identities=32% Similarity=0.613 Sum_probs=390.9
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhcC-CCCCCCCCCCCCCCCCCCccccccccCC-----CC--ccccceeeeCCCC
Q 013037 1 MRECISVHIGQAGIQVGNACWELYCLEHG-IQPDGQMPGDTTVGGGDDAFNTFFSETG-----AG--KHVPRAVFVDLEP 72 (451)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~-~~~~~~~~~~~~~~~~~~~~~~~f~e~~-----~~--~~~pRailvD~e~ 72 (451)
|||||+||+||||||||.+||+++++||+ ++++|.. .+..++||++.+ .+ +|+||||+||+||
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~---------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep 71 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY---------DDARDSFFENVSENVNRPGKENLKARAVLVDMEE 71 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc---------cccccceecccccccccCCCccccCcccccCCCc
Confidence 99999999999999999999999999999 6666642 345789998533 23 4999999999999
Q ss_pred ceeeccccccccccCCccceecccccccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHH
Q 013037 73 TVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152 (451)
Q Consensus 73 ~~i~~~~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~ 152 (451)
++|++++.++++.+|+|++++++++|+|||||+|||..|++..|+++|+||+++|+||++|||+++||+|||||||+|++
T Consensus 72 ~vi~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ 151 (465)
T PTZ00387 72 GVLNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTR 151 (465)
T ss_pred cHHHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHH
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCC-----------
Q 013037 153 LLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIER----------- 221 (451)
Q Consensus 153 l~e~l~dey~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~----------- 221 (451)
|+|.|+|+||++.+++++|+|+. .+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..
T Consensus 152 lle~l~d~y~~~~~~~~~V~P~~-~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~ 230 (465)
T PTZ00387 152 ILGMLEDEFPHVFRFCPVVFPSA-VDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRG 230 (465)
T ss_pred HHHHHHHhcccCceeeeEecCCC-CCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccccccccc
Confidence 99999999999999999999985 578899999999999999999999999999999999988777653
Q ss_pred ----------------CCcchhhHHHHHHHhhcccccccCCCCccchhhhhcCCCCCCcccccccccccccccccccccc
Q 013037 222 ----------------PTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQ 285 (451)
Q Consensus 222 ----------------~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~ 285 (451)
+.|+++|++||+.|+++|+++||||.+|.|+.++.+||||||++||++++++|+.+.....+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~ 310 (465)
T PTZ00387 231 PQPHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGP 310 (465)
T ss_pred ccccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhccccc
Confidence 7899999999999999999999999999999999999999999999999999998877777888
Q ss_pred cCHHHHHHhhcCCCCCCcccCCCCCcccceeccccCcCChhhHHHHHHhhhhcCccccccCCCCCCceeEeccCCccCCC
Q 013037 286 LSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 365 (451)
Q Consensus 286 ~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~ 365 (451)
.++.+|+.++|+++++|+.++|+.++||++++++||++.+.++.+.+.+++ ++..|++|+|+++++++|.++|...
T Consensus 311 ~s~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk--~~~~f~~W~p~~~~~~~~~~~~~~~-- 386 (465)
T PTZ00387 311 RRLDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLK--EQLNMIYWNEDGFKTGLCNVSPLGQ-- 386 (465)
T ss_pred CCHHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHh--ccccccccCCCceEEEeeccCCCCC--
Confidence 999999999999999999999999999999999999988999998887776 4488999999999999999987643
Q ss_pred CCcccccceeEeecCChhhHHHHHHHHHHHHHHhhcccceecccccccChhhHHHHHHHHHHHHHHHHHHccCCC
Q 013037 366 GDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESA 440 (451)
Q Consensus 366 ~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~~kAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~~~~ 440 (451)
++++++++|+|+|..+|++++++|++||+||||||||+ +|||++||.||+++|++|+++|+++.....
T Consensus 387 ------~~s~~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~~Y~~~~~~~~ 454 (465)
T PTZ00387 387 ------PYSLLCLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQTAEP 454 (465)
T ss_pred ------ceeEEEecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccchHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 67899999999999999999999999999999999999 799999999999999999999999974433
No 11
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=100.00 E-value=7.2e-101 Score=736.57 Aligned_cols=431 Identities=34% Similarity=0.627 Sum_probs=402.3
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccc
Q 013037 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (451)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~ 80 (451)
||||||||+||||||||.+||++||.||+|.++|..+.... ++.++-++||++.+++.|+|||||||+||+||+.+.+
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~--~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~ 79 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFAT--EGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILS 79 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhh--hCccccccceeeccCCccccceeeeccchHHHhcccc
Confidence 68999999999999999999999999999999998765443 3568899999999999999999999999999999999
Q ss_pred ccccccCCccceecc--cccccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhh
Q 013037 81 GTYRQLFHPEQLISG--KEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLS 158 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~--~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~ 158 (451)
++++.+|+|+|+... .+|+|||||.|| .+|+++.|+++|.|+|++|.||+++||+++||++||||||+||.|+|.|+
T Consensus 80 ~~~s~l~n~eni~~s~~ggGAGNNWA~GY-~~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~ 158 (448)
T KOG1374|consen 80 SPYSGLYNPENIFLSDHGGGAGNNWASGY-SQGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLN 158 (448)
T ss_pred chhhcccCccceEEecCCCCccccccccc-ccchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHH
Confidence 999999999999854 468999999996 45999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcceeEEEEecCCC-CCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhh
Q 013037 159 VDYGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISS 237 (451)
Q Consensus 159 dey~~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~ 237 (451)
|+||||.+.+++|||... .++++|||||++|+|++|.+.+|+++++||.+|.++|.+.+.++.|+|.++|++||..|++
T Consensus 159 drypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~ 238 (448)
T KOG1374|consen 159 DRYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSA 238 (448)
T ss_pred HhchhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999863 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccchhhhhcCCCCCCcccccccccccccccccccc--cccCHHHHHHhhcCCCCCCcccCC---CCCcc
Q 013037 238 LTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFH--EQLSVAEITNSAFEPSSMMAKCDP---RHGKY 312 (451)
Q Consensus 238 ~t~~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~s~~Pl~~~~~~~~--~~~~~~~l~~~~~~~~n~~~~~~~---~~~~~ 312 (451)
.|.++||||+++.+|..+...|+|+|++||+.+++.|+++...... +.-++.+.++.++.++++|++..+ .+..|
T Consensus 239 st~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~ 318 (448)
T KOG1374|consen 239 STTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCY 318 (448)
T ss_pred ccccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcch
Confidence 9999999999999999999999999999999999999998765544 677888999999999999988765 33579
Q ss_pred cceeccccCcCChhhHHHHHHhhhhcCccccccCCCCCCceeEeccCCccCCCCCcccccceeEeecCChhhHHHHHHHH
Q 013037 313 MACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRID 392 (451)
Q Consensus 313 ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~ 392 (451)
++...++.|.+.+..+...+.+++.++...|++|.|.++++++....|+.... ++.|+.+|+|+|+|..+|++++
T Consensus 319 ~si~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~-----~~vSglml~N~t~i~~lfe~~~ 393 (448)
T KOG1374|consen 319 ISILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRA-----HRVSGLMLANSTSIVSLFERIL 393 (448)
T ss_pred HhHHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccc-----cceeeeeeccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888876543 4789999999999999999999
Q ss_pred HHHHHHhhcccceecccccccChh---hHHHHHHHHHHHHHHHHHHccCC
Q 013037 393 HKFDLMYAKRAFVHWYVGEGMEEG---EFSEAREDLAALEKDYEEVGAES 439 (451)
Q Consensus 393 ~~~~~m~~~kAflH~Y~~~Gmee~---eF~Ea~~~l~~li~~Y~~~~~~~ 439 (451)
.+|+||++||||||+|+++||.++ ||.|+++.+++++++|..+.+..
T Consensus 394 ~qydklrk~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~~~~ 443 (448)
T KOG1374|consen 394 GQYDKLRKKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAEQPD 443 (448)
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999999999999888 99999999999999999886544
No 12
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=2.7e-97 Score=766.96 Aligned_cols=412 Identities=27% Similarity=0.467 Sum_probs=377.3
Q ss_pred EEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeeccccccc
Q 013037 4 CISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY 83 (451)
Q Consensus 4 ii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~~~~ 83 (451)
||+||+||||||||.+||+++++||+++++|.... ..+..++||+|..+++|+||+|+||+||++|++++.+..
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~~------~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~ 75 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYKY------ERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSS 75 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCccc------cccccceeecccCCCCcCCceeecCCCchHHHHhhcCCC
Confidence 89999999999999999999999999987765421 245678999999999999999999999999999988664
Q ss_pred c--ccCCccceecccccccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhc
Q 013037 84 R--QLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 161 (451)
Q Consensus 84 ~--~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey 161 (451)
+ +.|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+|
T Consensus 76 ~~~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y 155 (446)
T cd02189 76 GGTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEY 155 (446)
T ss_pred CcccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhc
Confidence 3 68999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhhcccc
Q 013037 162 GKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 241 (451)
Q Consensus 162 ~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 241 (451)
|++.+++++|+|+. .+++++|+||++|+|++|.+++|+++++||++|.++|.+.++++.++|+++|++||+.|+++|+|
T Consensus 156 ~~~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~ 234 (446)
T cd02189 156 PESLLLNIVVWPYT-TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQP 234 (446)
T ss_pred CccceeeeeccCCC-CCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhH
Confidence 99999999999976 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-CC-------CCccchhhhhcCCCCCCcccccccccccccccccccccccCHHHHHHhhc---CCCCCCcc------
Q 013037 242 LRF-DG-------ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAF---EPSSMMAK------ 304 (451)
Q Consensus 242 ~r~-~~-------~~~~~l~~~~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~~~~~l~~~~~---~~~n~~~~------ 304 (451)
.|+ ++ ..+.++++++++|||+|++||++++++|+++.....++..+|.+|+++++ .+++.+..
T Consensus 235 ~r~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~ 314 (446)
T cd02189 235 SLDSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTV 314 (446)
T ss_pred hhccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhcccccccccccccc
Confidence 987 53 35889999999999999999999999999987777788999999999866 56665544
Q ss_pred -------------cCCCCCcccceeccccCcCChhhHHHHHHhhhhcCccccccCCCCCCceeEeccCCccCCCCCcccc
Q 013037 305 -------------CDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKV 371 (451)
Q Consensus 305 -------------~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~ 371 (451)
++++.++||++++++||+..+.++... + ++...|++|+|+++++++|.++|... +.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~---~--~~~~~f~~W~p~~~~~~~~~~~~~~~------~~ 383 (446)
T cd02189 315 RPEGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADERK---F--RDPLLYVNWSPSPVRFSISSHKRSFS------KY 383 (446)
T ss_pred ccccccccccccccCCcccceeeeeeeeeCCCchHHHHHH---H--hccCcCCCcCCCCEeeeecCCCCCcC------Cc
Confidence 456789999999999998877776643 2 36688999999999999998876532 23
Q ss_pred cceeEeecCChhhHHHHHHHHHHHHHHhhcccceecccccccChhhHHHHHHHHHHHHHHHH
Q 013037 372 QRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 433 (451)
Q Consensus 372 ~~s~~~l~Nst~i~~~l~~l~~~~~~m~~~kAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~ 433 (451)
++++++++|+|+|..+|++++++|++||+||||||||+++||||+||.||+++|++|+++|+
T Consensus 384 ~~s~~~l~Nst~i~~~l~~i~~~f~~mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 384 EKSVTLVSNSQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred ceeEEEEeCCchHHHHHHHHHHHHHHHHhcCcchhhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999999999999999999999999999996
No 13
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=1.6e-97 Score=753.85 Aligned_cols=379 Identities=36% Similarity=0.705 Sum_probs=362.2
Q ss_pred eeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeeccccc
Q 013037 2 RECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG 81 (451)
Q Consensus 2 ~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~~ 81 (451)
||||+||+||||||||.+||+.+++|| |+||+|+||+||++|++++.+
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh--------------------------------~~pR~v~iD~e~~~i~~i~~~ 48 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH--------------------------------LKARAVLIDMEEGVVNEILKG 48 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh--------------------------------cCCcceeccCChhHHHHHhcC
Confidence 799999999999999999999999886 679999999999999999998
Q ss_pred cccccCCccceecccccccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhc
Q 013037 82 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 161 (451)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey 161 (451)
+++++|+|++++.+++|+||||++||+..|++..|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+|
T Consensus 49 ~~~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y 128 (379)
T cd02190 49 PLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEF 128 (379)
T ss_pred ccccccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhhcccc
Q 013037 162 GKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 241 (451)
Q Consensus 162 ~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 241 (451)
|++.+++++|+|+.. +++++++||++|+|++|.+++|+++++||++|. +|+++|++||+.|+++|++
T Consensus 129 ~~~~~~~~~v~P~~~-~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~ 195 (379)
T cd02190 129 PEVYRFVTSVYPSAD-DDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSS 195 (379)
T ss_pred CccceEEEeecCCCC-CCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccce
Confidence 999999999999985 788999999999999999999999999999998 6999999999999999999
Q ss_pred cccCCCCccchhhhhcCCCCCCcccccccccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcccceeccccC
Q 013037 242 LRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRG 321 (451)
Q Consensus 242 ~r~~~~~~~~l~~~~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~RG 321 (451)
+||||.+|.|+.++.++|||||++||++++++|+++.....++..++.+|++++++++++|+.++|+.++|+++++++||
T Consensus 196 ~rf~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG 275 (379)
T cd02190 196 MRFEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRG 275 (379)
T ss_pred eecccccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcC
Confidence 99999999999999999999999999999999999877677788999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHhhhhcCccccccCCCCCCceeEeccCCccCCCCCcccccceeEeecCChhhHHHHHHHHHHHHHHhhc
Q 013037 322 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAK 401 (451)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~~ 401 (451)
+..+.++.+.+.+++.+ ..|++|+|+++++++|.++|... ++++++++|+|+|..+|++++++|++||+|
T Consensus 276 ~~~~~ei~~~~~~l~~~--~~fv~W~p~~~~~~~~~~~~~~~--------~~s~~~lsNsTsI~~~f~~i~~~f~~mf~k 345 (379)
T cd02190 276 NVSVSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVPPVGH--------SYSLLCLANNTCIKGTFTELKERFMKLYKR 345 (379)
T ss_pred CCCHHHHHHHHHHHhcc--CcCcCcCCCcEEEeecccCCCCc--------ceeEEEecCccHHHHHHHHHHHHHHHHHhc
Confidence 99999998888877655 67999999999999999887542 678999999999999999999999999999
Q ss_pred ccceecccccccChhhHHHHHHHHHHHHHHHHHH
Q 013037 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435 (451)
Q Consensus 402 kAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~ 435 (451)
|||||||+++||||+||.||+++|++++++|+++
T Consensus 346 rAflh~Y~~eG~ee~ef~ea~~~l~~li~~Y~~l 379 (379)
T cd02190 346 KAHLHHYTQVGMEQGDFTEALESISNLIDEYDYL 379 (379)
T ss_pred ccchhhhhCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999874
No 14
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=1.5e-89 Score=699.80 Aligned_cols=381 Identities=49% Similarity=0.890 Sum_probs=362.5
Q ss_pred eEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccccc
Q 013037 3 ECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT 82 (451)
Q Consensus 3 Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~~~ 82 (451)
|||+||+||||||||.+||+.+ |+||+||++++.++.++
T Consensus 1 eii~i~vGq~G~qig~~~w~~~-----------------------------------------i~iD~e~~~i~~i~~~~ 39 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL-----------------------------------------ILVDLDPRVINEILQGQ 39 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH-----------------------------------------HcccCCcchhhhhhccc
Confidence 8999999999999999999982 99999999999999988
Q ss_pred ccccCCccceecccccccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcC
Q 013037 83 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (451)
Q Consensus 83 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~ 162 (451)
.+.+|++++++.+++|+||||++||+..|++..|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||
T Consensus 40 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~ 119 (382)
T cd06059 40 LSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYP 119 (382)
T ss_pred ccccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhhccccc
Q 013037 163 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 242 (451)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (451)
++.+++++|+|+...+++++++||++|++.+|.+++|+++++||++|.++|.+.+.+..++|+++|++||++|+++|.++
T Consensus 120 ~~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~ 199 (382)
T cd06059 120 KILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASL 199 (382)
T ss_pred ccceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhccccccc
Confidence 99999999999987556899999999999999999999999999999999999888889999999999999999999999
Q ss_pred ccCCCCccchhhhhcCCCCCCcccccccccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcccceeccccCc
Q 013037 243 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGD 322 (451)
Q Consensus 243 r~~~~~~~~l~~~~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~RG~ 322 (451)
|+||.++.|+++++++|||||++||++++++|+++.....+...++.+++++++++++++..++++.++|+++++++||+
T Consensus 200 r~~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~ 279 (382)
T cd06059 200 RFPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGD 279 (382)
T ss_pred ccCCCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCC
Confidence 99999999999999999999999999999999998776677889999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHhhhhcCccccccCCCCCCceeEeccCCc-cCCCCCcccccceeEeecCChhhHHHHHHHHHHHHHHhhc
Q 013037 323 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPT-VVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAK 401 (451)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~~ 401 (451)
..+.++.+.+.+++.+.... +|+|+++++++|.++|. . .++++++++|+|+|.++|++++++|++||+|
T Consensus 280 ~~~~~v~~~~~~~~~~~~~~--~w~p~~~~~~~~~~~~~~~--------~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~ 349 (382)
T cd06059 280 VFQSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPPRAE--------LGKSALFLSNSTSIGESLERLIEKFDKLYKR 349 (382)
T ss_pred CCHHHHHHHHHHHHHhcccc--cCCCCcEEEEecCCCCCcC--------cceeEEEecCchHHHHHHHHHHHHHHHHHhh
Confidence 99999998888777665443 89999999999998876 2 2688999999999999999999999999999
Q ss_pred ccceecccccccChhhHHHHHHHHHHHHHHHHH
Q 013037 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434 (451)
Q Consensus 402 kAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~ 434 (451)
|||||||+++||||+||.||+++|++++++|++
T Consensus 350 rAflh~Y~~~G~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 350 KAFLHWYLGEGMDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred CcchhhhcCcCCchHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999973
No 15
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=100.00 E-value=6.1e-84 Score=618.13 Aligned_cols=406 Identities=86% Similarity=1.386 Sum_probs=388.1
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccc
Q 013037 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (451)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~ 80 (451)
|||||.|++||.|.|||...|+++|.||++.++|..+.+++.....+..+.||.++..++++||+++||+||. |++++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 9999999999999999999999999999999999988765543334567899999999999999999999999 999999
Q ss_pred ccccccCCccceecccccccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhh
Q 013037 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~de 160 (451)
|.|+.+|||++++.++++++||+|+|+|+.|+|+.|..+++||+.++.|..+|||.++||.|||||||+++.++|.+..+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhhccc
Q 013037 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (451)
Q Consensus 161 y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (451)
|+||..+.++++|.+..++.+++|||.+|+.+...+++|+.+++||++.+.+|++.+.+..|+|.++|++|++.++++|+
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsita 239 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (407)
T ss_pred hhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhcCCCCCCcccccccccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcccceecccc
Q 013037 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (451)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~R 320 (451)
++||.|.+|.||.+|.+||||+| + ++|+.+.....+++.++.+++.+.|++.|+|++|||+.++|+++++++|
T Consensus 240 Slrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyr 312 (407)
T KOG1376|consen 240 SLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 312 (407)
T ss_pred ccccCCcccccHHHHHhhCCCCc----c---cccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhcc
Confidence 99999999999999999999999 2 8999999889999999999999999999999999999999999999999
Q ss_pred CcCChhhHHHHHHhhhhcCccccccCCCCCCceeEeccCCccCCCCCcccccceeEeecCChhhHHHHHHHHHHHHHHhh
Q 013037 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA 400 (451)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~ 400 (451)
|++.|+++..++..+|.+.++.|++ ..+++..+++..+..|+|+|+|+|++...++-.+|+.||.
T Consensus 313 gdvvP~~v~~A~a~ikt~rt~qfvd---------------~~v~gg~lakv~Ravcmlsnttai~eawarld~kfdLmya 377 (407)
T KOG1376|consen 313 GDVVPKDVNAAIATIKTKRTIQFVD---------------TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 377 (407)
T ss_pred CCcCcccchHHHHhhhhccccccce---------------eeccCcchhhhceeeEecCCCcHHHHHHhhcchhhhhhhc
Confidence 9999999999999999999888876 2345667888899999999999999999999999999999
Q ss_pred cccceecccccccChhhHHHHHHHHHHHH
Q 013037 401 KRAFVHWYVGEGMEEGEFSEAREDLAALE 429 (451)
Q Consensus 401 ~kAflH~Y~~~Gmee~eF~Ea~~~l~~li 429 (451)
||||||||.++||||+||.||++.|..|.
T Consensus 378 krafVhwyvgegmeegef~ea~ed~a~le 406 (407)
T KOG1376|consen 378 KRAFVHWYVGEGMEEGEFSEAREDLAALE 406 (407)
T ss_pred chheeeeccCCCccccchhhhhhhHHhhc
Confidence 99999999999999999999999998763
No 16
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=100.00 E-value=5.4e-70 Score=524.79 Aligned_cols=344 Identities=41% Similarity=0.824 Sum_probs=328.7
Q ss_pred CCCccccccccCCCCccccceeeeCCCCceeeccccccccccCCccceecccccccCCCcccccccchhhHHHHHHHHHH
Q 013037 45 GDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRK 124 (451)
Q Consensus 45 ~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~ 124 (451)
+..+++++|.+...++|+||+|+||++|+++++++++++...|+|++ +++| .|+|..|.++.|.
T Consensus 7 q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds------- 70 (369)
T KOG1375|consen 7 QLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS------- 70 (369)
T ss_pred eeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc-------
Confidence 46689999999988899999999999999999999999999999998 4433 8899999987776
Q ss_pred HHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeee
Q 013037 125 LADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLL 204 (451)
Q Consensus 125 ~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~ 204 (451)
.||++||||++||++||||||.|++++..|+++||.+.+.+++|.|+.. ++++++|||+.|++..|.+++|.++++
T Consensus 71 ---~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~ci 146 (369)
T KOG1375|consen 71 ---SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFCI 146 (369)
T ss_pred ---ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCccccc
Confidence 8999999999999999999999999999999999999999999999986 899999999999999999999999999
Q ss_pred cchhhHhhhhccCCCCCCCcchhhHHHHHHHhhcccccccCCCCccchhhhhcCCCCCCccccccccccccccccccccc
Q 013037 205 DNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHE 284 (451)
Q Consensus 205 dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~ 284 (451)
||++|+++|.+.+++..+. ++|..+||+|++|.|+.++..|++|||++||+.++++|++.....++.
T Consensus 147 dNeal~dic~~~lkl~~~~-------------g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~~ 213 (369)
T KOG1375|consen 147 DNEALYDICFRTLKLKTPS-------------GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR 213 (369)
T ss_pred ccHHHHHHHhhhhcccCCC-------------CceeecccccccchhhhhhhhccCCCcchhhccccccccccccccccc
Confidence 9999999999999888877 899999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHhhcCCCCCCcccCCCCCcccceeccccCcCChhhHHHHHHhhhhcCccccccCCCCCCceeEeccCCccCC
Q 013037 285 QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVP 364 (451)
Q Consensus 285 ~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~ 364 (451)
.++++++++++|+.+|++..++ ||+++.++|| +.+++++.+..++.|++..|++|+|+++|+++|..||..+
T Consensus 214 a~tv~eltqq~fdaknmm~a~d-----yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~gl- 285 (369)
T KOG1375|consen 214 ALTVPELTQQMFDAKNMMTACD-----YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGGL- 285 (369)
T ss_pred cccccccccccccCcchhhhhh-----hhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCCCccc-
Confidence 9999999999999999999887 9999999999 8899999999999999999999999999999999999877
Q ss_pred CCCcccccceeEeecCChhhHHHHHHHHHHHHHHhhcccceecccccccChhhHHHHHHHHHHHHHHHHHHc
Q 013037 365 GGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 436 (451)
Q Consensus 365 ~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~~kAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~ 436 (451)
..+.+.++|+|+|...|+++.++|..||+||||||||.++||||+||+||..++++|+.+|+++.
T Consensus 286 -------kms~tf~~n~taiqelf~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~ 350 (369)
T KOG1375|consen 286 -------KMSSTFIGNNTAIQELFRCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 350 (369)
T ss_pred -------cccccccccchhHHHHHHHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 67889999999999999999999999999999999999999999999999999999999999994
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=4.1e-64 Score=503.78 Aligned_cols=328 Identities=45% Similarity=0.819 Sum_probs=303.6
Q ss_pred eEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccccc
Q 013037 3 ECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT 82 (451)
Q Consensus 3 Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~~~ 82 (451)
||++||+||||||||.+||+.+ |+||+|+++++.++.++
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~-----------------------------------------v~idtd~~~l~~~~~~~ 39 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL-----------------------------------------VLVDTEPGVIDETLSGP 39 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh-----------------------------------------heecCCHHHHHHHhCcc
Confidence 8999999999999999999871 99999999999999888
Q ss_pred ccccCCccceecccccccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcC
Q 013037 83 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (451)
Q Consensus 83 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~ 162 (451)
...+|++.+.+.+++|+||||+.||+..|++..|+++|+||+++|+||++|||+++||++||||||+|++++|.|||+||
T Consensus 40 ~~~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~ 119 (328)
T cd00286 40 YRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYP 119 (328)
T ss_pred cccccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcC
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhhccccc
Q 013037 163 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 242 (451)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (451)
++++++++|+|+...+ +++++||+++++++|.+++|+++++||++|.++|.+.+.+..+.|+++|++||++|+++|.++
T Consensus 120 ~~~~~~~~v~P~~~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 198 (328)
T cd00286 120 KRLKITFSILPGPDEG-VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPL 198 (328)
T ss_pred ccceeEEEecCCCCCc-chhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhcccccccc
Confidence 9999999999997533 699999999999999999999999999999999998888889999999999999999999999
Q ss_pred ccCCCCccchhhhhcCCCCCCcccccccccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcccceeccccCc
Q 013037 243 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGD 322 (451)
Q Consensus 243 r~~~~~~~~l~~~~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~RG~ 322 (451)
|+||.+|.|++++.++|+|+|++||++++++|+.......+...++.+++++++++.+++..+++..++|+++++++||.
T Consensus 199 r~~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~ 278 (328)
T cd00286 199 RFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGP 278 (328)
T ss_pred ccCccccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCC
Confidence 99999999999999999999999999999999987666667788999999999999999988888889999999999999
Q ss_pred CChhhHHHHHHhhhhcCccccccCCCCCCceeEeccCCccCCCCCcccccceeEeecCC
Q 013037 323 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNS 381 (451)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Ns 381 (451)
....++.+....++.+.++. +|+|+++++++|..++.. +.+.++++|+|+
T Consensus 279 ~~~~~v~~~~~~l~~~~~~~--~w~~~~~~~~~~~~~~~~-------~~~~~~~~l~Ns 328 (328)
T cd00286 279 VSPSEVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPAS-------EHKVSALLLSNS 328 (328)
T ss_pred CChHHHHHHHHHHHHhCCcC--CcCCCCEeEeecCCCCCC-------CcCeEEEEeccC
Confidence 99999988888777665544 899999999999877641 126788999986
No 18
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=3.5e-48 Score=400.64 Aligned_cols=414 Identities=19% Similarity=0.247 Sum_probs=291.2
Q ss_pred eeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCC----CCccccceeeeCCCCceeec
Q 013037 2 RECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETG----AGKHVPRAVFVDLEPTVIDE 77 (451)
Q Consensus 2 ~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~----~~~~~pRailvD~e~~~i~~ 77 (451)
|||||||+||++|+||+||||. ||..+.++.... ....+++++|+++. ..+|+||+|++|+++++...
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~--Qe~~~~y~~~~~------~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl 72 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNL--QEANFGYDPDSP------ASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHL 72 (493)
T ss_pred CceEEEeccCccccHhhhhhhh--hhhhcCCCCCCc------cccCCCceeeeccccCCCceeEcCcEEEEecCCccccc
Confidence 7999999999999999999999 888886553311 13567899999964 56999999999999997654
Q ss_pred cccccc----------------cccCCccceeccc-----ccccCCCcccccc---cchhhHHHHHHHHHHHHhhcCCCC
Q 013037 78 VRTGTY----------------RQLFHPEQLISGK-----EDAANNFARGHYT---IGKEIVDLCLDRIRKLADNCTGLQ 133 (451)
Q Consensus 78 ~~~~~~----------------~~~~~~~~~~~~~-----~g~gnn~a~G~~~---~g~~~~~~~~d~ir~~~E~cD~lq 133 (451)
.+.+.+ +.+|||++++... .+.+++|++|+-. .+.+..|+++|+||+++|+||++|
T Consensus 73 ~~~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQ 152 (493)
T cd06060 73 PEEGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQ 152 (493)
T ss_pred ccccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccc
Confidence 433322 2469999997553 2556677777533 355688999999999999999999
Q ss_pred ceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCC----CCccchhhHHHHHHHHhhccCCeeeeecc-hh
Q 013037 134 GFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV----STSVVEPYNSVLSTHSLLEHTDVAVLLDN-EA 208 (451)
Q Consensus 134 gf~i~~sl~GGtGSG~~s~l~e~l~dey~~~~i~~~~v~P~~~~----~~~~~~~yN~~lsl~~l~e~~d~~i~~dN-~~ 208 (451)
|||+++|++||| ||+|+.++|.|+||||++.++++++.|.... .+.++++||++|++.+|.+++|+++|+.- ..
T Consensus 153 GFqi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~ 231 (493)
T cd06060 153 GFQVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGT 231 (493)
T ss_pred cEEEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccc
Confidence 999999999999 8999999999999999999999999997532 25789999999999999999999999974 34
Q ss_pred hHhhhh-----ccCCCCCCCcchhhHHHHHHHhhcccccccCCCCccchhhhhcCCCCCCcccccccccc-ccccccccc
Q 013037 209 IYDICR-----RSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYA-PVISAEKAF 282 (451)
Q Consensus 209 l~~~~~-----~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~s~~-Pl~~~~~~~ 282 (451)
+|.... ..+.++.....+..+++|.+|.++|.|+|.++.. .+|.++...|.+..| |+...+.+ |+-..
T Consensus 232 ~w~~~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~gR-ki~~~~~a~P~p~~---- 305 (493)
T cd06060 232 LWRKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSGR-KVVAAGLALPFPMV---- 305 (493)
T ss_pred cccCCCCCCCCcccccCCCCchHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhccc-hhhhhccCCCCCCC----
Confidence 444321 2234455567788999999999999999999765 579999999987666 66655443 43221
Q ss_pred ccccCHHHHHHhhcCCC--CCCcccC-CCCCcccceeccccCcCCh-------------------hhHHHHHHhhhhcCc
Q 013037 283 HEQLSVAEITNSAFEPS--SMMAKCD-PRHGKYMACCLMYRGDVVP-------------------KDVNAAVATIKTKRT 340 (451)
Q Consensus 283 ~~~~~~~~l~~~~~~~~--n~~~~~~-~~~~~~ls~~~~~RG~~~~-------------------~~~~~~~~~~~~~~~ 340 (451)
..-.+.++.+.+-... .++ .++ +...+++...++.||-... ..+.+.++.......
T Consensus 306 -~~~~l~d~L~~~~~~~~~~~l-~p~~~~~~~~~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~~ 383 (493)
T cd06060 306 -GGQDLIDFLDQSDGAVPWLQL-TPGCQIGTRCVIQSVVLRGIPEERLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQY 383 (493)
T ss_pred -CCCcHHHHHHhcCCCCCcccc-CCCCccCceeeeeeehhcCCChhhccccccccccccccchhcCCHHHHHHHHHHhcc
Confidence 1224445544431111 122 222 2346889999999994310 011111111111000
Q ss_pred -ccc----c----cCCCCCCceeEec-cCCccC--CCCC--cc--ccc--ceeEeecCChhhHHHHHHHHHHHHHHhhcc
Q 013037 341 -IQF----V----DWCPTGFKCGINY-QPPTVV--PGGD--LA--KVQ--RAVCMISNSTSVAEVFSRIDHKFDLMYAKR 402 (451)
Q Consensus 341 -~~f----~----~w~p~~~~~~~~~-~~~~~~--~~~~--~~--~~~--~s~~~l~Nst~i~~~l~~l~~~~~~m~~~k 402 (451)
..+ + -=+|.+|..-++. ....+. .... .+ .++ ..++-|+|++++.+.|+.+..++.|+--+|
T Consensus 384 ~~s~~~~~~~~~p~~~~~PfP~if~~~v~~~G~~~~~~~~~~~~~~V~s~p~~a~l~ss~~l~~~l~~l~~~~~kl~~~r 463 (493)
T cd06060 384 PGSMSALSVLPLPLKIRVPFPYIFNPNISADGFVLDNSSRGSAGADVESIPVLAALQSSPSLGEMLESLHRQLSKLDLRR 463 (493)
T ss_pred CCcchhheecCCCCCCCCCCchhhccccCCCccccCCCcccccccceeechhhhhhcCchHHHHHHHHHHHHHHhhhhHh
Confidence 000 0 0011222111110 000000 0000 00 011 123568999999999999999999999888
Q ss_pred cceecccccccChhhHHHHHHHHHHHHHHHHH
Q 013037 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434 (451)
Q Consensus 403 AflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~ 434 (451)
+|.|.+.|+|+|||.|+++.|.++.+.|++
T Consensus 464 --~~~~~~~g~e~de~~e~le~L~~~~~~Y~~ 493 (493)
T cd06060 464 --KASFFESGLEEDEYKELLEQLLDLAECYED 493 (493)
T ss_pred --hhcccccccCHHHHHHHHHHHHHHHHhhcC
Confidence 889999999999999999999999999963
No 19
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=4.4e-50 Score=379.07 Aligned_cols=215 Identities=47% Similarity=0.871 Sum_probs=200.9
Q ss_pred eEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccccc
Q 013037 3 ECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT 82 (451)
Q Consensus 3 Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~~~ 82 (451)
|||+||+||||||||.+||+++++||+++++.. ......+.++||++...++|+||+|+||+|+++++.++..+
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~~------~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~ 74 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDSK------SQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASP 74 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTSS------SSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccccccc------cccccccccceeeeccccccccccccccccccccccccccc
Confidence 899999999999999999999999999987721 11346678999999999999999999999999999999888
Q ss_pred ccccCCccceecccccccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcC
Q 013037 83 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (451)
Q Consensus 83 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~ 162 (451)
.+.+|.+++++.+++|+|+||+.||+..|+++.++++|+||+++|+||.+|||+++||+|||||||+++.|++.||++||
T Consensus 75 ~~~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~ 154 (216)
T PF00091_consen 75 KRSLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYP 154 (216)
T ss_dssp ETTESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTST
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhcccc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcc
Q 013037 163 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYT 225 (451)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~ 225 (451)
++++++++|+|+. .+.++++||++++|++|.+++|+++++||++|.++|.+.+++..|+|.
T Consensus 155 ~~~~~~~~ilP~~--~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~ 215 (216)
T PF00091_consen 155 KKPIISFSILPFS--SEGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFN 215 (216)
T ss_dssp TSEEEEEEEE-CG--GGSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHH
T ss_pred ccceeeccccccc--cccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcC
Confidence 9999999999994 389999999999999999999999999999999999999998887775
No 20
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=1.3e-36 Score=282.04 Aligned_cols=185 Identities=40% Similarity=0.677 Sum_probs=171.2
Q ss_pred cccccCCCCccccceeeeCCCCceeeccccccccccCCccceecccccccCCCcccccc-----cchhhHHHHHHHHHHH
Q 013037 51 TFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT-----IGKEIVDLCLDRIRKL 125 (451)
Q Consensus 51 ~~f~e~~~~~~~pRailvD~e~~~i~~~~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~-----~g~~~~~~~~d~ir~~ 125 (451)
++|.++ ++.||+|++|+++++++.+..++.+..|++.+.+..+.++||||++||+. .|+++.++++|+||++
T Consensus 3 ~~~g~g---~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~ 79 (192)
T smart00864 3 KVFGVG---GYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREE 79 (192)
T ss_pred EEEEeC---CchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 356664 68899999999999999988777778899988888999999999999998 8999999999999999
Q ss_pred HhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeec
Q 013037 126 ADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLD 205 (451)
Q Consensus 126 ~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~d 205 (451)
+|.| ++|+++||++||||||+++.+++.++ +||+.. ++++|+|. ..+..+++||+++++++|.+++|.++++|
T Consensus 80 le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~d 152 (192)
T smart00864 80 LEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVID 152 (192)
T ss_pred hcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 9999 89999999999999999999999999 998877 99999994 36889999999999999999999999999
Q ss_pred chhhHhhhhccCCCCCCCcchhhHHHHHHHhhcccccccCC
Q 013037 206 NEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDG 246 (451)
Q Consensus 206 N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~ 246 (451)
|++|.+.|.+.+.+ .++|+++|++||+.|+++|.++||||
T Consensus 153 N~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 153 NDALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred hHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999877765 77999999999999999999999986
No 21
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=100.00 E-value=3e-33 Score=275.49 Aligned_cols=239 Identities=22% Similarity=0.325 Sum_probs=176.6
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc-ccccccCC----CCccccceeeeCCCCcee
Q 013037 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAF-NTFFSETG----AGKHVPRAVFVDLEPTVI 75 (451)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~-~~~f~e~~----~~~~~pRailvD~e~~~i 75 (451)
||||+|||+|+.+|++|+||||+ ||..+.....-.... ..... ||+|+.++ ..+|+||+|++|++..+.
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~--Qea~l~~~~d~~~~~----~~~~~ndvlyr~g~~~~~~~tytPRl~l~Dl~g~~g 74 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQ--QEAYLGLATDSEEPP----GELCPNDVLYRTGRTDHGQITYTPRLLLVDLKGELG 74 (483)
T ss_pred CceEEEEEeeccccchhhhhcch--hhHhhccCCcccCCh----hhcCcchhhhhccccccCceeeccceeEEecCcccc
Confidence 99999999999999999999999 888765432211111 22233 89999874 349999999999999876
Q ss_pred eccccccc-------------------------------------------------------------------cccCC
Q 013037 76 DEVRTGTY-------------------------------------------------------------------RQLFH 88 (451)
Q Consensus 76 ~~~~~~~~-------------------------------------------------------------------~~~~~ 88 (451)
.....+.+ +.+||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yH 154 (483)
T KOG2530|consen 75 TLKYQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYH 154 (483)
T ss_pred ccccchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcC
Confidence 32111110 16689
Q ss_pred ccceecccc-----cccCCCcccccccch-hhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcC
Q 013037 89 PEQLISGKE-----DAANNFARGHYTIGK-EIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (451)
Q Consensus 89 ~~~~~~~~~-----g~gnn~a~G~~~~g~-~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~ 162 (451)
|+++...+. ++-++|..|+-.+-+ ...+++.|+||.++|+||.+|||+++.++.+||| |+++.++|.|+|||+
T Consensus 155 p~tl~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys 233 (483)
T KOG2530|consen 155 PRTLNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYS 233 (483)
T ss_pred ccccccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhc
Confidence 988865443 333444444333222 3568899999999999999999999999999996 999999999999999
Q ss_pred CcceeEEEEecCCC-CCC---ccch---hhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHH
Q 013037 163 KKSKLGFTVYPSPQ-VST---SVVE---PYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVI 235 (451)
Q Consensus 163 ~~~i~~~~v~P~~~-~~~---~~~~---~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i 235 (451)
++.++++++.|... .++ .+-. ..|.++++.+|.+.|++++|+.--.. ++ ..-...+++|.++
T Consensus 234 ~~~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~~-------~~----~~~~tsA~~a~~~ 302 (483)
T KOG2530|consen 234 KKAVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTASG-------LG----DLWETSAKLARAF 302 (483)
T ss_pred CCceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeeccccccc-------cc----cHHHHHHHHHhhc
Confidence 99999999998432 122 2222 57899999999999999999842111 11 2346779999999
Q ss_pred hhcccccccCCCCccchhhhhc
Q 013037 236 SSLTASLRFDGALNVDVTEFQT 257 (451)
Q Consensus 236 ~~~t~~~r~~~~~~~~l~~~~~ 257 (451)
.++|.|.|..+..+.-+.++.+
T Consensus 303 ds~tlptr~~ssS~~~~~d~ls 324 (483)
T KOG2530|consen 303 DSITLPTRLISSSNLRQRDTLS 324 (483)
T ss_pred ccccccceecchhHHHHHHHHH
Confidence 9999999998875554444443
No 22
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.97 E-value=1.2e-31 Score=269.40 Aligned_cols=214 Identities=21% Similarity=0.292 Sum_probs=186.7
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccc
Q 013037 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (451)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~ 80 (451)
|+ |..|.+|+||+.|-+++++. +. ..+.+|+||+|+||+++..++.++.
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~-----~~-------------------------~~~~~~~~~~iavntD~~~L~~l~~ 49 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRH-----DK-------------------------RSGFGYCVGALAINTAKNDLKGLKH 49 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHh-----CC-------------------------CcCCccceeEEEEECCHHHHHhhhc
Confidence 55 78899999999999999876 00 0123688999999999999887654
Q ss_pred ccccccCCccceecccc-----cccCCCcccccccchhhHHHHHHHHHHHHhhcCC--CCceeEEeeCCCCcccCchHHH
Q 013037 81 GTYRQLFHPEQLISGKE-----DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTG--LQGFLVFNAVGGGTGSGLGSLL 153 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-----g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~--lqgf~i~~sl~GGtGSG~~s~l 153 (451)
.+.|+.++.+++ |+|+||. .|+++.++..|.||+++|.||. +|+|++++|+|||||||+++.|
T Consensus 50 -----~~~~~ki~~g~~~t~G~GaG~~~~-----~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~i 119 (349)
T cd02202 50 -----IPAEDRILIGQSEVKGHGVGADRE-----LGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVL 119 (349)
T ss_pred -----CCCCCEEEecCcccCCCCCCCChH-----HHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHH
Confidence 345677777664 6677754 5789999999999999999997 9999999999999999999999
Q ss_pred HHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHH
Q 013037 154 LERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQ 233 (451)
Q Consensus 154 ~e~l~dey~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~ 233 (451)
++.++++|+ +++++++++|+.. +..+++||+++++++|.+++|.++++||++|.+.+.. + .+.|+++|++||+
T Consensus 120 ae~lke~~~-~~~~~iv~~P~~~--eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~---~-~~~f~~~N~~Ia~ 192 (349)
T cd02202 120 AKELKERYE-EPVYALGVLPARE--EGERYSANAARSLDALSEEADAIILFDNDAWKRKGES---V-EEAYDRINEEIAR 192 (349)
T ss_pred HHHHHHhCC-ccEEEEEEecCCC--CCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc---h-HHHHHHHHHHHHH
Confidence 999999999 8999999999874 4589999999999999999999999999999998742 2 4799999999999
Q ss_pred HHhhccccccc-----CCCCccchhhhhcCCCCC
Q 013037 234 VISSLTASLRF-----DGALNVDVTEFQTNLVPY 262 (451)
Q Consensus 234 ~i~~~t~~~r~-----~~~~~~~l~~~~~~L~p~ 262 (451)
.|..++.+.|| +|.+|.|++++.++|.+.
T Consensus 193 ~i~~l~~~~r~~~~~~~g~invD~~dv~~~L~~~ 226 (349)
T cd02202 193 RIGLLLRAGEANAGDSVGESVLDASEVINTLSGG 226 (349)
T ss_pred HHHHHHHhhhcccCCCCCeEeccHHHHHHHhccC
Confidence 99999999999 999999999999999765
No 23
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.95 E-value=1.8e-27 Score=234.71 Aligned_cols=205 Identities=18% Similarity=0.269 Sum_probs=169.2
Q ss_pred EEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeeccccccc
Q 013037 4 CISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY 83 (451)
Q Consensus 4 ii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~~~~ 83 (451)
|..|.+|+||+.+-.++++. ++ .+ .+.++||++...++.+... .
T Consensus 3 i~viGvGg~G~n~v~~~~~~-----~~---------------------------~~---~~~iainTd~~~L~~~~a~-~ 46 (303)
T cd02191 3 IAVIGFGGAGGNIVDKFLEY-----DK---------------------------EG---RSAVAVNTDAQDLLGLEAE-N 46 (303)
T ss_pred EEEEEECchHHHHHHHHHHc-----CC---------------------------CC---ccEEEEECcHHHHhcCCCC-c
Confidence 77899999999999998764 00 00 4789999999887765421 1
Q ss_pred cccCCccceecccccccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcCC
Q 013037 84 RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (451)
Q Consensus 84 ~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~~ 163 (451)
+-++.++ .+...|+|+||+.| ++..++..+.||+.+|.||. |++++++|||||||+++.+++.+++.|+
T Consensus 47 ki~iG~~--~t~g~GaG~~~~~G-----~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~- 115 (303)
T cd02191 47 RVLIGQA--RTKGLGAGANPELG-----AEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT- 115 (303)
T ss_pred EEecCCc--cccCCCCCCCHHHH-----HHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC-
Confidence 2222221 12345899998765 68999999999999999994 8999999999999999999999999995
Q ss_pred cceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhhcccccc
Q 013037 164 KSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLR 243 (451)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 243 (451)
..+++.++|+ ..+..+++||+.+++++|.+++|.++++||++|.+.|.+ +.+. ..|+.+|++||+.+.++|..+|
T Consensus 116 -~~~~vvt~Pf--~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~~-~af~~~N~~ia~~i~~it~~i~ 190 (303)
T cd02191 116 -LTVAVVTLPF--SDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASLE-GAFDHADEVLVRAVGGLFGAIE 190 (303)
T ss_pred -CEEEEEeCCc--ccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CChH-HHHHHHHHHHHHHHHHHHHhhc
Confidence 4444555554 457789999999999999999999999999999999976 6664 5999999999999999999999
Q ss_pred cCCCCccchhhhhcCCC
Q 013037 244 FDGALNVDVTEFQTNLV 260 (451)
Q Consensus 244 ~~~~~~~~l~~~~~~L~ 260 (451)
+||.+|.|++++.+.|-
T Consensus 191 ~~g~invD~~dv~~~l~ 207 (303)
T cd02191 191 IEGEINVDFADVKNVMD 207 (303)
T ss_pred cCCcccCCHHHHHHHhc
Confidence 99999999999988773
No 24
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.92 E-value=1.7e-25 Score=224.09 Aligned_cols=206 Identities=14% Similarity=0.279 Sum_probs=165.6
Q ss_pred eEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccccc
Q 013037 3 ECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT 82 (451)
Q Consensus 3 Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~~~ 82 (451)
-|..|.+|+||+.+-+++++. ++ .-.+.+.+|++...++.+...
T Consensus 19 ~i~viGvGg~G~n~v~~l~~~-----~~------------------------------~~~~~iainTD~~~L~~~~a~- 62 (349)
T TIGR00065 19 KIKVIGVGGGGNNTVNRMLEE-----GV------------------------------EGVEFIAINTDAQHLKTTKAD- 62 (349)
T ss_pred eEEEEEeCCcHHHHHHHHHHc-----CC------------------------------CceEEEEEECCHHHHhcCCCC-
Confidence 377899999999999988765 00 015778899988766555321
Q ss_pred ccccCCccceecccccccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcC
Q 013037 83 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (451)
Q Consensus 83 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~ 162 (451)
.+.++.++ .+...|+|++|+. |+++.++.+|.||+.+|.||.+ ++++|+|||||||+++.+++.+++ |+
T Consensus 63 ~ki~iG~~--~t~G~GaG~~~~~-----G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ake-~~ 131 (349)
T TIGR00065 63 KKILIGKK--LTRGLGAGGNPEI-----GRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAKE-LG 131 (349)
T ss_pred eEEEcCCC--CCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHHH-cC
Confidence 12222222 1233488999775 6899999999999999999985 999999999999999866666655 54
Q ss_pred CcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhhccccc
Q 013037 163 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 242 (451)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (451)
+..+++.++|+. .+..+++||+.+++++|.+++|.++++||++|.+.|.+ +.+.. .|+.+|.+|++.+.++|.++
T Consensus 132 -~l~vaivt~Pf~--~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~~-af~~~N~iia~~i~~it~~i 206 (349)
T TIGR00065 132 -ALTVAVVTKPFK--FEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLND-AFKVADDVLVRAVKGISELI 206 (349)
T ss_pred -CCEEEEEeCCcc--ccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHHH-HHHHHHHHHHHHHHhHHHhh
Confidence 555555666664 57799999999999999999999999999999999977 77644 99999999999999999999
Q ss_pred ccCCCCccchhhhhcCCC
Q 013037 243 RFDGALNVDVTEFQTNLV 260 (451)
Q Consensus 243 r~~~~~~~~l~~~~~~L~ 260 (451)
|+||.+|.|+.++.+-|-
T Consensus 207 r~~g~iNvDf~dv~~vl~ 224 (349)
T TIGR00065 207 TKPGLINIDFADVRAVMS 224 (349)
T ss_pred ccCCcCcCCHHHHHHHHh
Confidence 999999999999988774
No 25
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.92 E-value=4.1e-25 Score=218.89 Aligned_cols=209 Identities=13% Similarity=0.263 Sum_probs=170.1
Q ss_pred EEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeeccccccc
Q 013037 4 CISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY 83 (451)
Q Consensus 4 ii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~~~~ 83 (451)
|..|.+|+||+.+-+++++. ++ .+ ...+++|++...++.+.. +.
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~---------------------------~~---~~~~a~ntD~~~L~~~~~-~~ 46 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GL---------------------------EG---VEFIAANTDAQALAKSKA-PN 46 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC---------------------------CC---ceEEEEECCHHHHhcCCC-Cc
Confidence 67899999999999998765 00 00 467899998887766543 22
Q ss_pred cccCCccceecccccccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcCC
Q 013037 84 RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (451)
Q Consensus 84 ~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~~ 163 (451)
+.++.++ .+...|+|+||+.| ++..++..|.||+.+|.||.+ ++++|+|||||||+++.+++..++ |+
T Consensus 47 k~~ig~~--~t~g~Gag~~~~~g-----~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~e-~g- 114 (304)
T cd02201 47 KIQLGKE--LTRGLGAGGDPEVG-----RKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAKE-MG- 114 (304)
T ss_pred EEEcCCC--CCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHHH-cC-
Confidence 2233332 13345899998865 678889999999999999975 999999999999999997776664 54
Q ss_pred cceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhhcccccc
Q 013037 164 KSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLR 243 (451)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 243 (451)
+..+++.++|+. .+..+++||+++++++|.+++|.++++||++|.+.|.+.+.+.. .|+.+|++|++.+.++|.++|
T Consensus 115 ~~~~~vvt~Pf~--~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~ 191 (304)
T cd02201 115 ALTVAVVTKPFS--FEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLIT 191 (304)
T ss_pred CCEEEEEeCCcc--ccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 456666667765 46779999999999999999999999999999999987777666 899999999999999999999
Q ss_pred cCCCCccchhhhhcCCCCCC
Q 013037 244 FDGALNVDVTEFQTNLVPYP 263 (451)
Q Consensus 244 ~~~~~~~~l~~~~~~L~p~p 263 (451)
++|.+|.|+.++.+.|-.-.
T Consensus 192 ~~g~invD~~dv~~vl~~~G 211 (304)
T cd02201 192 KPGLINLDFADVKTVMKNKG 211 (304)
T ss_pred cCccccCCHHHHHHHhccCC
Confidence 99999999999999886433
No 26
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.90 E-value=6.9e-24 Score=183.42 Aligned_cols=126 Identities=59% Similarity=1.020 Sum_probs=113.9
Q ss_pred CcccccccccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcccceeccccCcCChhhHHHHHHhhhhcCccc
Q 013037 263 PRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQ 342 (451)
Q Consensus 263 p~~~fl~~s~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~ 342 (451)
||+||+.++++|+.......++..++.+|++++|+++|+|++++|++|+||++++++||++.+.++.+.+.+++.+.+..
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~ 80 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQ 80 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccc
Confidence 89999999999999988888999999999999999999999999999999999999999999999999999999999899
Q ss_pred cccCCCCCCceeEeccCCccCCCCCcccccceeEeecCChhhHHHHHHHHH
Q 013037 343 FVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDH 393 (451)
Q Consensus 343 f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~ 393 (451)
|++|+|+++|+++|.++|...+.+ +.++++|+|+|+|.+.|+++..
T Consensus 81 Fv~W~p~~~kv~~~~~~p~~~~~s-----~~s~~~LsNsTaI~~~f~~i~~ 126 (126)
T PF03953_consen 81 FVDWIPTGFKVGICKVPPYGQPNS-----DRSGLMLSNSTAIAEVFSRISH 126 (126)
T ss_dssp B-SSSTTCEEEEEESS-STSTTTS-----SEEEEEEEEEGGGHHHHHHHHH
T ss_pred eeeecCchhhcccccCCCcccCCC-----cceEEEeCChHHHHHHHHHhcC
Confidence 999999999999999999887543 5789999999999999999863
No 27
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.89 E-value=3.6e-23 Score=208.17 Aligned_cols=205 Identities=18% Similarity=0.333 Sum_probs=167.3
Q ss_pred EEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeeccccccc
Q 013037 4 CISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY 83 (451)
Q Consensus 4 ii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~~~~ 83 (451)
|..|.+|+||+.+-.++++. ++ .+ ...|+||++...+..+... .
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~---------------------------~~---v~~iaiNTD~q~L~~~~a~-~ 74 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GI---------------------------EG---AETIAINTDAQHLAMIKAD-K 74 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC---------------------------CC---ceEEEEECCHHHHhcCCCC-c
Confidence 77899999999999998764 00 01 4678999988766554322 1
Q ss_pred cccCCccceecccccccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcCC
Q 013037 84 RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (451)
Q Consensus 84 ~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~~ 163 (451)
+.++.++ ++...|+|++|..| ++..++..|.||+.+|.||. |++++++|||||||+++.|++.+++. +
T Consensus 75 ki~iG~~--~t~G~GaG~dp~~G-----~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake~-g- 142 (378)
T PRK13018 75 KILIGKS--LTRGLGAGGDPEVG-----RKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKEQ-G- 142 (378)
T ss_pred EEecCCc--cCCCCCCCCChHHH-----HHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHHc-C-
Confidence 1122221 12334788886655 67788889999999999997 89999999999999999999999874 3
Q ss_pred cceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhhcccccc
Q 013037 164 KSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLR 243 (451)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 243 (451)
...+++++.|+.. +...+..|+.+++++|.+++|.++++||++|.++| ..+.+.. .|+.+|++|++.+.++|.++|
T Consensus 143 ~ltv~vVt~Pf~~--EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~~-af~~~N~iIa~~I~~It~~i~ 218 (378)
T PRK13018 143 ALVVGVVTKPFKF--EGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIAD-AFSVADEVIAETVKGITETIT 218 (378)
T ss_pred CCeEEEEEcCccc--ccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHHH-HHHHHHHHHHHHHHhhhhhcc
Confidence 5677888999863 66788999999999999999999999999999999 6666654 899999999999999999999
Q ss_pred cCCCCccchhhhhcCCC
Q 013037 244 FDGALNVDVTEFQTNLV 260 (451)
Q Consensus 244 ~~~~~~~~l~~~~~~L~ 260 (451)
+||.+|.|+.++.+-|-
T Consensus 219 ~~G~iN~Df~dv~~vl~ 235 (378)
T PRK13018 219 KPSLINLDFADVKSVMK 235 (378)
T ss_pred cCCceecCHHHHHHHhc
Confidence 99999999999988774
No 28
>PF14881 Tubulin_3: Tubulin domain
Probab=99.87 E-value=7.2e-22 Score=180.16 Aligned_cols=149 Identities=25% Similarity=0.377 Sum_probs=110.5
Q ss_pred cccCCccceeccccc-------ccCCCcccccccch-hhHHHHHH-HHHHHHhhcCCCCceeEEeeCCCCcccCchHHHH
Q 013037 84 RQLFHPEQLISGKED-------AANNFARGHYTIGK-EIVDLCLD-RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLL 154 (451)
Q Consensus 84 ~~~~~~~~~~~~~~g-------~gnn~a~G~~~~g~-~~~~~~~d-~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~ 154 (451)
+.+|||++++..++- ...+|..|.-.... +..+++.| .||.++|+||.+||||++.++.+||| |+++.++
T Consensus 17 r~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~L 95 (180)
T PF14881_consen 17 RVHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLL 95 (180)
T ss_pred cceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHH
Confidence 456788887755431 22344444322222 22345555 59999999999999999999999996 9999999
Q ss_pred HHhhhhcCCcce-eEEEEecCCCCCC-----ccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhh
Q 013037 155 ERLSVDYGKKSK-LGFTVYPSPQVST-----SVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLN 228 (451)
Q Consensus 155 e~l~dey~~~~i-~~~~v~P~~~~~~-----~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N 228 (451)
|+|||||||+++ +.+++.+...... ...+.+|+++++.+|.++|++++|+.... +..+..|..
T Consensus 96 e~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~-----------d~~s~~htS 164 (180)
T PF14881_consen 96 EHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS-----------DASSNWHTS 164 (180)
T ss_pred HHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC-----------cCCCcHHHH
Confidence 999999999996 5555554332111 22456899999999999999999997200 234556999
Q ss_pred HHHHHHHhhccccccc
Q 013037 229 RLVSQVISSLTASLRF 244 (451)
Q Consensus 229 ~~ia~~i~~~t~~~r~ 244 (451)
+++|.+|.++|.|+|.
T Consensus 165 ai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 165 AILAAAIDTITLPYRL 180 (180)
T ss_pred HHHHHHHHhccccCCC
Confidence 9999999999999984
No 29
>PRK09330 cell division protein FtsZ; Validated
Probab=99.86 E-value=1.1e-21 Score=197.52 Aligned_cols=207 Identities=15% Similarity=0.290 Sum_probs=163.5
Q ss_pred eEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccccc
Q 013037 3 ECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT 82 (451)
Q Consensus 3 Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRailvD~e~~~i~~~~~~~ 82 (451)
.|..|.+|+||+.+-.++++. ++ .+ ...|.+|++...+..+...
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~-----~~---------------------------~~---v~fia~NTD~q~L~~~~a~- 58 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEE-----GI---------------------------QG---VEFIAANTDAQALLKSKAP- 58 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHc-----CC---------------------------CC---ceEEEEeCcHHHHhcCCCC-
Confidence 377899999999999998765 10 01 2568899988766544322
Q ss_pred ccccCCccceecccccccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcC
Q 013037 83 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (451)
Q Consensus 83 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~ 162 (451)
.+.++.++ .+...|+|++|. .|++..++..+.||+.+|.||.+ ++++++|||||||.++.+ ..+..+|+
T Consensus 59 ~ki~lG~~--~t~GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaapvI-A~iake~g 127 (384)
T PRK09330 59 VKIQLGEK--LTRGLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAPVV-AEIAKELG 127 (384)
T ss_pred eEEEcCCc--ccccCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHHHH-HHHHHHcC
Confidence 12222221 123348888876 56889999999999999999977 999999999999999954 45555664
Q ss_pred CcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhhccccc
Q 013037 163 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 242 (451)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (451)
+++++|.|.+...|..+++||+.+++++|.+++|.+|+++|++|.+++.+.+.+.. .|+.+|.+|++.+.+++..+
T Consensus 128 ---~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~~-Af~~ad~vL~~~v~~It~~i 203 (384)
T PRK09330 128 ---ILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLLD-AFKAADDVLRQAVQGITDLI 203 (384)
T ss_pred ---CcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 45555554444468889999999999999999999999999999999977666655 99999999999999999999
Q ss_pred ccCCCCccchhhhhcCCC
Q 013037 243 RFDGALNVDVTEFQTNLV 260 (451)
Q Consensus 243 r~~~~~~~~l~~~~~~L~ 260 (451)
++||.+|.|+.++.+-|-
T Consensus 204 ~~pG~iNvDfaDvk~vm~ 221 (384)
T PRK09330 204 TKPGLINLDFADVKTVMS 221 (384)
T ss_pred hcCCcccCCHHHHHHHHh
Confidence 999999999999887774
No 30
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.54 E-value=5.2e-15 Score=125.54 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=57.0
Q ss_pred eeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCC----CCccccceeeeCCCCceeec
Q 013037 2 RECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETG----AGKHVPRAVFVDLEPTVIDE 77 (451)
Q Consensus 2 ~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~----~~~~~pRailvD~e~~~i~~ 77 (451)
|||||||+|+.+|+||+||||+ ||..+.++..... .+.+++++|+++. ..+|+||+|++|++.+....
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~--Qe~~~~y~~~~~~------~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~lGsL 72 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNI--QESYLPYDPDEKP------SEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGLGSL 72 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhh--hhcccccCccccC------cccCCceEEecccCcCCCeeECCcEEEEecCCCcCcc
Confidence 7999999999999999999999 9998876543221 2457899999973 45999999999999997644
Q ss_pred cc
Q 013037 78 VR 79 (451)
Q Consensus 78 ~~ 79 (451)
-+
T Consensus 73 ~~ 74 (115)
T PF10644_consen 73 RK 74 (115)
T ss_pred cc
Confidence 43
No 31
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.34 E-value=6.5e-12 Score=124.40 Aligned_cols=152 Identities=16% Similarity=0.224 Sum_probs=129.3
Q ss_pred cccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCC
Q 013037 98 DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV 177 (451)
Q Consensus 98 g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~~~~i~~~~v~P~~~~ 177 (451)
|+|.| ...|++..++..+.|++.++..| -++++.++|||||+|.++.+++.+++ .....++++++|+..
T Consensus 70 GaGa~-----P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~~- 138 (338)
T COG0206 70 GAGAN-----PEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFSF- 138 (338)
T ss_pred CCCCC-----cHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecchh-
Confidence 55555 67788999999999999988766 56899999999999999999999988 488889999999974
Q ss_pred CCccchhhHHHHHHHHhhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhhcccccccCCCCccchhhhhc
Q 013037 178 STSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQT 257 (451)
Q Consensus 178 ~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~~~~ 257 (451)
|.....-|+...+..|.+++|.+|+++|+.|.+... ... -...|.-.+.++++.+.+++..+.-||..|.|+.++.+
T Consensus 139 -EG~~r~~~A~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~-~~~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~ 215 (338)
T COG0206 139 -EGSPRMENAEEGIEELREVVDTLIVIPNDKLLKGKD-KTP-IAEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRT 215 (338)
T ss_pred -cCchHHHHHHHHHHHHHHhCCcEEEEecHHHHhccC-ccc-HHHHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHH
Confidence 555677799999999999999999999999988764 222 23368888999999999999999999999999999988
Q ss_pred CCCCCC
Q 013037 258 NLVPYP 263 (451)
Q Consensus 258 ~L~p~p 263 (451)
-|-...
T Consensus 216 vm~~~G 221 (338)
T COG0206 216 VMKGGG 221 (338)
T ss_pred HHhcCC
Confidence 876643
No 32
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=98.37 E-value=1.7e-07 Score=79.46 Aligned_cols=114 Identities=25% Similarity=0.392 Sum_probs=86.0
Q ss_pred CccchhhhhcCCCCCCcccccccccccccccccccccccCHHHHHH--hhcCCCCCCcccCCCCCcccceeccccCcCCh
Q 013037 248 LNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITN--SAFEPSSMMAKCDPRHGKYMACCLMYRGDVVP 325 (451)
Q Consensus 248 ~~~~l~~~~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~~~~~l~~--~~~~~~n~~~~~~~~~~~~ls~~~~~RG~~~~ 325 (451)
+|.|++++.++|+|+| |+.++++|.... .+..+..++.. .++++++++..+++.. |+++.. +...
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~----~~~~ 67 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP----DLTL 67 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC----CCCH
Confidence 3679999999999999 899999999752 34456666666 7888888776665543 676665 6788
Q ss_pred hhHHHHHHhhhhcCc-cccccCCC-CCCceeEeccCCccCCCCCcccccceeEeecC-ChhhHHHHHHHH
Q 013037 326 KDVNAAVATIKTKRT-IQFVDWCP-TGFKCGINYQPPTVVPGGDLAKVQRAVCMISN-STSVAEVFSRID 392 (451)
Q Consensus 326 ~~~~~~~~~~~~~~~-~~f~~w~p-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N-st~i~~~l~~l~ 392 (451)
.++.+.+..++.+.. ..|+.|.| ..++. ..+.+.++| +|+|...|+++.
T Consensus 68 ~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~------------------~~~~~~i~ni~t~i~~~~~~~~ 119 (120)
T smart00865 68 KEVNEAMERIREKADPDAFIIWGPVIDEEL------------------GGDEIRVTVIATGIGSAFKRLS 119 (120)
T ss_pred HHHHHHHHHHHHhcCCCceEEEccccCCcC------------------CCCcEEEEEEecccCccccccC
Confidence 899998888877655 77899998 33311 134678999 999999988763
No 33
>PF13809 Tubulin_2: Tubulin like
Probab=97.60 E-value=0.00096 Score=67.62 Aligned_cols=103 Identities=19% Similarity=0.117 Sum_probs=61.3
Q ss_pred cccccccCCCccccccc---chhhHHHHHHHHHHHHhh--cCCC--C--ceeEEeeCCCCcccCchHHHHHHhhhhc---
Q 013037 94 SGKEDAANNFARGHYTI---GKEIVDLCLDRIRKLADN--CTGL--Q--GFLVFNAVGGGTGSGLGSLLLERLSVDY--- 161 (451)
Q Consensus 94 ~~~~g~gnn~a~G~~~~---g~~~~~~~~d~ir~~~E~--cD~l--q--gf~i~~sl~GGtGSG~~s~l~e~l~dey--- 161 (451)
....|+|..-+.|+... -.++.+.+.+.++..+++ -... + -++|++|++||||||+---++-.||+.+
T Consensus 100 ~~~~GAgq~R~~GRla~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGGTGSG~~lDia~~lr~~~~~~ 179 (345)
T PF13809_consen 100 PLSAGAGQIRALGRLAFFSNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGGTGSGMFLDIAYLLRDILKQP 179 (345)
T ss_pred chhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCccchhHHHHHHHHHHHHhhcc
Confidence 34557777766664332 123334444444421111 0001 1 2688999999999999988999999866
Q ss_pred --CCcceeEEEEecCCCCCC---ccchhhHHHHHHHHhhc
Q 013037 162 --GKKSKLGFTVYPSPQVST---SVVEPYNSVLSTHSLLE 196 (451)
Q Consensus 162 --~~~~i~~~~v~P~~~~~~---~~~~~yN~~lsl~~l~e 196 (451)
....+..+.++|...... .....-|+.-+|.+|.-
T Consensus 180 ~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~~ 219 (345)
T PF13809_consen 180 GQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELDY 219 (345)
T ss_pred cCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHHH
Confidence 455688999999843211 12334466666666543
No 34
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=71.11 E-value=4.5 Score=34.69 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhh
Q 013037 116 DLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (451)
Q Consensus 116 ~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~de 160 (451)
+...++|+..+++++. +|++++.++ |||=. -....+|.+.++
T Consensus 42 gt~~~~i~~ai~~~~~-dGVlVltDL-Gssp~-n~~~a~e~~~~~ 83 (124)
T PRK14484 42 GTSFDQIQEAIEKNES-DGVLIFFDL-GSAEM-NAEMAIEMLDGE 83 (124)
T ss_pred cchHHHHHHHHHhcCc-CCeEEEEeC-CChHH-HHHHHHHhcCCC
Confidence 3456889999999999 999999999 77621 233345555544
No 35
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=66.42 E-value=26 Score=31.94 Aligned_cols=110 Identities=18% Similarity=0.206 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHHHHHH
Q 013037 114 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 193 (451)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~ 193 (451)
+...+.+.|+..+|+ .+. -++.+.+-|+- -.++.++-.|+.+||...+ .+++|+...+..-.+ ..=.-+..
T Consensus 27 ik~~L~~~i~~lie~--G~~--~fi~GgalG~D-~waae~vl~LK~~yp~ikL--~~v~Pf~~q~~~W~~--~~q~~y~~ 97 (177)
T PF06908_consen 27 IKKALKKQIIELIEE--GVR--WFITGGALGVD-LWAAEVVLELKKEYPEIKL--ALVLPFENQGNNWNE--ANQERYQS 97 (177)
T ss_dssp HHHHHHHHHHHHHTT--T----EEEE---TTHH-HHHHHHHHTTTTT-TT-EE--EEEESSB-TTTTS-H--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCC--EEEECCcccHH-HHHHHHHHHHHhhhhheEE--EEEEcccchhhcCCH--HHHHHHHH
Confidence 445566677777774 232 24444444553 4667777789999997444 678898654322111 23344566
Q ss_pred hhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhhcccc
Q 013037 194 LLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 241 (451)
Q Consensus 194 l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 241 (451)
|.+.||-++.+..+..... ..|..-|+.+..+=+.+.+-
T Consensus 98 il~~aD~v~~vs~~~Y~~~---------~~~~~rn~fMvdhsd~~iav 136 (177)
T PF06908_consen 98 ILEQADFVVVVSERPYYSP---------GQLQKRNRFMVDHSDGLIAV 136 (177)
T ss_dssp HHHH-SEEEESSSSB---H---------HHHHHHHHHHHHHSSEEEEE
T ss_pred HHHhCCEEEEccCCCCCCH---------HHHHHHhHHHHhCCCeEEEE
Confidence 6778888888865433211 12345566555554444443
No 36
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=65.15 E-value=5.9 Score=34.03 Aligned_cols=29 Identities=21% Similarity=0.508 Sum_probs=23.6
Q ss_pred CCcccCchHHHHHHhhhhcCC-cceeEEEE
Q 013037 143 GGTGSGLGSLLLERLSVDYGK-KSKLGFTV 171 (451)
Q Consensus 143 GGtGSG~~s~l~e~l~dey~~-~~i~~~~v 171 (451)
+|-|.|+|..+++.||.++|+ ..+++.+.
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~~~eI~AlGT 35 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPEEVEIIALGT 35 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCCCcEEEEEeh
Confidence 456789999999999999998 66666654
No 37
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=64.18 E-value=9.3 Score=31.96 Aligned_cols=33 Identities=15% Similarity=0.400 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcc
Q 013037 114 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 146 (451)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtG 146 (451)
-.+++.+++++.+++.+.-+|++++.++.|||-
T Consensus 39 ~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 39 SIEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp CHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred CHHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 446677888888888888999999999998863
No 38
>PLN02847 triacylglycerol lipase
Probab=57.54 E-value=37 Score=36.87 Aligned_cols=115 Identities=21% Similarity=0.248 Sum_probs=62.8
Q ss_pred cccccccCCCCccccce-eeeCCCCceeecccccccc------------ccCCccceecccccccCCC-----ccccccc
Q 013037 49 FNTFFSETGAGKHVPRA-VFVDLEPTVIDEVRTGTYR------------QLFHPEQLISGKEDAANNF-----ARGHYTI 110 (451)
Q Consensus 49 ~~~~f~e~~~~~~~pRa-ilvD~e~~~i~~~~~~~~~------------~~~~~~~~~~~~~g~gnn~-----a~G~~~~ 110 (451)
-++++.....+.|.|.- |++|-+.+.|=-...|... ..|++..+. ..|. .+. -.|++..
T Consensus 153 eDVL~~~~ks~i~kPaffVavDh~~K~IVVsIRGT~Si~D~LTDL~~~~vPf~~s~l~--~gG~-~n~~~G~AH~Gml~A 229 (633)
T PLN02847 153 EDVLIQKPKAGILKPAFTIIRDENSKCFLLLIRGTHSIKDTLTAATGAVVPFHHSVLH--DGGV-SNLVLGYAHCGMVAA 229 (633)
T ss_pred HHEEEeecccccCCCCeEEEEeCCCCEEEEEECCCCCHHHHHHhcccccccCCccccc--ccCc-ccCcCCccCccHHHH
Confidence 35555555566677654 7888877755333233221 112221111 1111 111 2233333
Q ss_pred chhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhh--hcCCcceeEEE
Q 013037 111 GKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSV--DYGKKSKLGFT 170 (451)
Q Consensus 111 g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d--ey~~~~i~~~~ 170 (451)
.+.+.+.+...|++.++++...+=+++=||||||+. +.+.-.|++ .+++...++|+
T Consensus 230 ArwI~~~i~~~L~kal~~~PdYkLVITGHSLGGGVA----ALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 230 ARWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGGTA----ALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEEeccChHHHHH----HHHHHHHhcCCCCCCceEEEec
Confidence 345666777788888899988887888899977763 344444454 45665555555
No 39
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=56.02 E-value=16 Score=30.81 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhcCCCCceeEEeeCCCCc
Q 013037 115 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGT 145 (451)
Q Consensus 115 ~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGt 145 (451)
.+++.+++++.+++.+.-+|+.++.++-|||
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGS 70 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGS 70 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCC
Confidence 4567778888888888788999999998887
No 40
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=55.86 E-value=17 Score=30.56 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhcCCCCceeEEeeCCCCcc
Q 013037 115 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 146 (451)
Q Consensus 115 ~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtG 146 (451)
.+++.++++..+++.+.=+|+.++.++-|||=
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp 72 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSP 72 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 46677888888888777789999999999983
No 41
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=44.43 E-value=38 Score=29.46 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=39.1
Q ss_pred cccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEec
Q 013037 106 GHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYP 173 (451)
Q Consensus 106 G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~~~~i~~~~v~P 173 (451)
|++.....+...+...+++...++..-+-+++=||+||+ ++..+...++...+.+.+..++.-|
T Consensus 2 Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~----lA~l~a~~~~~~~~~~~~~~~~fg~ 65 (153)
T cd00741 2 GFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGA----LAGLAGLDLRGRGLGRLVRVYTFGP 65 (153)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHH----HHHHHHHHHHhccCCCceEEEEeCC
Confidence 555555666777777777777666777777888899665 4445555555543334444444433
No 42
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=40.34 E-value=28 Score=29.85 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhcCC-CCceeEEeeCCCCcccCchH-HHHHHhhh
Q 013037 116 DLCLDRIRKLADNCTG-LQGFLVFNAVGGGTGSGLGS-LLLERLSV 159 (451)
Q Consensus 116 ~~~~d~ir~~~E~cD~-lqgf~i~~sl~GGtGSG~~s-~l~e~l~d 159 (451)
+...++|++.+|+++. =+|++++.++ ||+ =+.+ ..++.++.
T Consensus 42 gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs--~~n~e~a~~~l~~ 84 (125)
T TIGR02364 42 GTSPDKIIEAIEKADNEADGVLIFYDL-GSA--VMNAEMAVELLED 84 (125)
T ss_pred cchHHHHHHHHHHhcCCCCCEEEEEcC-CCc--HhHHHHHHHHhcc
Confidence 3456788888999866 7899999999 664 2322 45566643
No 43
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=37.94 E-value=98 Score=31.23 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=54.7
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHH
Q 013037 110 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVL 189 (451)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~~~~i~~~~v~P~~~~~~~~~~~yN~~l 189 (451)
...+.+.++.+.|+..+ +..+||+|+|+.+ | --.++.+++.+-...++-.+++=+-.|....+.....+...++
T Consensus 63 mt~~~w~~la~~I~~~~---~~~dG~VVtHGTD--T-meeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 63 MTPEDWQHIADDIKANY---DDYDGFVILHGTD--T-MAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred CCHHHHHHHHHHHHHHh---ccCCeEEEeeccc--h-HHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 34566777777777765 4688999999773 4 2466777777554444544555567787654444444444444
Q ss_pred HHHHhhccCCeeeeecchhhHh
Q 013037 190 STHSLLEHTDVAVLLDNEAIYD 211 (451)
Q Consensus 190 sl~~l~e~~d~~i~~dN~~l~~ 211 (451)
.+..-....-..++| |+.++.
T Consensus 137 ~~A~~~~~~GV~V~f-~~~i~~ 157 (335)
T PRK09461 137 YVAANYPINEVTLFF-NNKLFR 157 (335)
T ss_pred HHHcCCCCCeEEEEE-CCEeec
Confidence 443322233344555 444443
No 44
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=36.50 E-value=29 Score=28.21 Aligned_cols=54 Identities=28% Similarity=0.452 Sum_probs=39.1
Q ss_pred eecCChhhHHHHHHH-------HHHHHHHhhcccceecccccccCh--hhHHHHHHHHHHHHHHHHHH
Q 013037 377 MISNSTSVAEVFSRI-------DHKFDLMYAKRAFVHWYVGEGMEE--GEFSEAREDLAALEKDYEEV 435 (451)
Q Consensus 377 ~l~Nst~i~~~l~~l-------~~~~~~m~~~kAflH~Y~~~Gmee--~eF~Ea~~~l~~li~~Y~~~ 435 (451)
.|+|.++|...|..| ++.-.++-.+|+|. +|+.+ ....||+..|+.|-.+++.=
T Consensus 27 sIanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~-----E~lQdkL~qi~eAR~AlDalR~eH~~k 89 (96)
T PF12210_consen 27 SIANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYY-----EGLQDKLAQIKEARAALDALREEHREK 89 (96)
T ss_dssp -GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888765 45556666667553 57743 68999999999999999753
No 45
>PRK13660 hypothetical protein; Provisional
Probab=34.85 E-value=1.8e+02 Score=26.63 Aligned_cols=112 Identities=11% Similarity=0.097 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHHHHHH
Q 013037 114 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 193 (451)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~ 193 (451)
+...+.+.|+..+|+ .+.=| +.+..=|+- =.++.++-.|+.+||...+ .+++|+...++.-.+ ..-.-+..
T Consensus 27 IK~aL~~~l~~~~e~--G~~wf--i~ggalG~d-~wAaEvvl~LK~~yp~lkL--~~~~PF~~q~~~W~e--~~q~~y~~ 97 (182)
T PRK13660 27 IKKAIKRKLIALLEE--GLEWV--IISGQLGVE-LWAAEVVLELKEEYPDLKL--AVITPFEEHGENWNE--ANQEKLAN 97 (182)
T ss_pred HHHHHHHHHHHHHHC--CCCEE--EECCcchHH-HHHHHHHHHHHhhCCCeEE--EEEeCccchhhcCCH--HHHHHHHH
Confidence 444555667777773 33322 222222332 2556677789999986544 456787643321111 11223445
Q ss_pred hhccCCeeeeecchhhHhhhhccCCCCCCCcchhhHHHHHHHhhcccccc
Q 013037 194 LLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLR 243 (451)
Q Consensus 194 l~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 243 (451)
+.+.||.|+.+....-. .+.-|..-|+.+..+=+.+.+-+.
T Consensus 98 i~~~aD~v~~vs~~~y~---------~p~q~~~rn~fmv~~sd~~i~~YD 138 (182)
T PRK13660 98 ILKQADFVKSISKRPYE---------SPAQFRQYNQFMLEHTDGALLVYD 138 (182)
T ss_pred HHHhCCEEEEecCCCCC---------ChHHHHHHHHHHHHccCeEEEEEc
Confidence 56689999888432110 011356777777776666555443
No 46
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=31.41 E-value=50 Score=30.85 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=40.0
Q ss_pred CcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEE
Q 013037 103 FARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGF 169 (451)
Q Consensus 103 ~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~~~~i~~~ 169 (451)
...|++..-..+.+.+...++...+++...+=++.=|||||+ +++.+.-.|+..++...+.++
T Consensus 99 vh~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGa----iA~l~a~~l~~~~~~~~i~~~ 161 (229)
T cd00519 99 VHSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGA----LASLLALDLRLRGPGSDVTVY 161 (229)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHH----HHHHHHHHHHhhCCCCceEEE
Confidence 345555555566677777888888877777777888899665 445555556655433333333
No 47
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=30.49 E-value=1.7e+02 Score=29.08 Aligned_cols=92 Identities=20% Similarity=0.159 Sum_probs=48.9
Q ss_pred chhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCCC-CccchhhHHHH
Q 013037 111 GKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS-TSVVEPYNSVL 189 (451)
Q Consensus 111 g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~~~~i~~~~v~P~~~~~-~~~~~~yN~~l 189 (451)
..+.+.++.+.|++.+++ .+||+|+|... | --.++..+..+-+..++-.+++=+..|....+ |.....++++.
T Consensus 55 t~~~~~~la~~i~~~~~~---~~GvVVtHGTD--T-me~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av~ 128 (313)
T PF00710_consen 55 TPEDWLELARAIQAALDD---YDGVVVTHGTD--T-MEETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAVR 128 (313)
T ss_dssp -HHHHHHHHHHHHHHHTT---CSEEEEE--ST--T-HHHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh---cCeEEEecCch--H-HHHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHHH
Confidence 456667777777777744 89999999763 3 23555566665555445556666778876543 33333344443
Q ss_pred HHHHhhccCCeeeeecchhhH
Q 013037 190 STHSLLEHTDVAVLLDNEAIY 210 (451)
Q Consensus 190 sl~~l~e~~d~~i~~dN~~l~ 210 (451)
...+ .+..-.+++|++. ++
T Consensus 129 ~A~~-~~~~GV~v~f~~~-i~ 147 (313)
T PF00710_consen 129 VAAS-PAGPGVLVVFNGR-IY 147 (313)
T ss_dssp HHHS-GGTSSEEEEETTE-EE
T ss_pred HHhc-ccCCceEEEeCCC-cc
Confidence 3333 2345555556554 54
No 48
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=28.86 E-value=2.1e+02 Score=21.98 Aligned_cols=55 Identities=18% Similarity=0.354 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhc--CCCCceeEEeeCC----CCcccCchHHHHHHhhhhcCCcceeEEEEec
Q 013037 116 DLCLDRIRKLADNC--TGLQGFLVFNAVG----GGTGSGLGSLLLERLSVDYGKKSKLGFTVYP 173 (451)
Q Consensus 116 ~~~~d~ir~~~E~c--D~lqgf~i~~sl~----GGtGSG~~s~l~e~l~dey~~~~i~~~~v~P 173 (451)
++..+.++..++.| ...+.+.|+|+.| +|. +-..+.+.|++.+....+..+.--+
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~~~~ 69 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYRDAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEEE--
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheeeecC
Confidence 34555666666655 3567889999998 554 7777888887766566566554433
No 49
>PF03283 PAE: Pectinacetylesterase
Probab=28.30 E-value=1.4e+02 Score=30.52 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=33.8
Q ss_pred ccccchhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHH-HHHhhhhcCC
Q 013037 107 HYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLL-LERLSVDYGK 163 (451)
Q Consensus 107 ~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l-~e~l~dey~~ 163 (451)
.|..|....+.+++.|... .-+..+-+++..+.+||.| +.+ .+.+++.+|.
T Consensus 132 l~frG~~i~~avl~~l~~~--gl~~a~~vlltG~SAGG~g----~~~~~d~~~~~lp~ 183 (361)
T PF03283_consen 132 LYFRGYRILRAVLDDLLSN--GLPNAKQVLLTGCSAGGLG----AILHADYVRDRLPS 183 (361)
T ss_pred eEeecHHHHHHHHHHHHHh--cCcccceEEEeccChHHHH----HHHHHHHHHHHhcc
Confidence 4556777777777766665 2333445677777777665 444 7889999995
No 50
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=27.83 E-value=1.9e+02 Score=28.93 Aligned_cols=92 Identities=16% Similarity=0.140 Sum_probs=55.2
Q ss_pred chhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHHH
Q 013037 111 GKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLS 190 (451)
Q Consensus 111 g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~~~~i~~~~v~P~~~~~~~~~~~yN~~ls 190 (451)
..+.+..+.+.|++.+++ .+||+|+|... | --.++..+..+-+. ++-.+++=+-.|....+.........++.
T Consensus 61 t~~~w~~l~~~I~~~~~~---~dGiVVtHGTD--T-meeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al~ 133 (323)
T cd00411 61 TDEDWLKIAKDINELYDS---YDGFVITHGTD--T-MEETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAVY 133 (323)
T ss_pred CHHHHHHHHHHHHHHHHh---cCcEEEEcCcc--c-HHHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHHH
Confidence 456677777778777663 78999999763 3 24556666655454 55555666677876544444455555554
Q ss_pred HHHhhc--cCCeeeeecchhh
Q 013037 191 THSLLE--HTDVAVLLDNEAI 209 (451)
Q Consensus 191 l~~l~e--~~d~~i~~dN~~l 209 (451)
.....+ ..-..|+|+++-+
T Consensus 134 ~A~~~~~~~~gV~V~f~~~i~ 154 (323)
T cd00411 134 VAANYDSRGRGVLVVFNDRIF 154 (323)
T ss_pred HHcCcccCCCeEEEEECCEEe
Confidence 443332 3456667755533
No 51
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=27.68 E-value=27 Score=16.77 Aligned_cols=8 Identities=50% Similarity=1.414 Sum_probs=6.0
Q ss_pred cCCCCCCc
Q 013037 257 TNLVPYPR 264 (451)
Q Consensus 257 ~~L~p~p~ 264 (451)
..|+||||
T Consensus 3 sGlI~fpR 10 (11)
T PF08259_consen 3 SGLIPFPR 10 (11)
T ss_pred ccccccCC
Confidence 45788887
No 52
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=27.60 E-value=60 Score=30.66 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=21.7
Q ss_pred EEeeCCCCcccCchHHHHHHhhhhcCCc
Q 013037 137 VFNAVGGGTGSGLGSLLLERLSVDYGKK 164 (451)
Q Consensus 137 i~~sl~GGtGSG~~s~l~e~l~dey~~~ 164 (451)
++-+++||+|||=+ -+++.|.+.++..
T Consensus 9 iiIgIaG~SgSGKT-Tva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGKT-TVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCHH-HHHHHHHHHhCcC
Confidence 56789999999984 4778888888744
No 53
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=27.16 E-value=47 Score=26.91 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=22.1
Q ss_pred CceeEEeeCCCCcccCchHHHHHHhhh
Q 013037 133 QGFLVFNAVGGGTGSGLGSLLLERLSV 159 (451)
Q Consensus 133 qgf~i~~sl~GGtGSG~~s~l~e~l~d 159 (451)
.+|.|+.+...|+|+.+-+.|++.|..
T Consensus 20 ~~~kivvD~~~G~~~~~~~~ll~~lg~ 46 (104)
T PF02879_consen 20 SGLKIVVDCMNGAGSDILPRLLERLGC 46 (104)
T ss_dssp TTCEEEEE-TTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 478999999999999888888888765
No 54
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=26.30 E-value=81 Score=31.69 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcc
Q 013037 114 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 146 (451)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtG 146 (451)
-.+++.++++..+++.+.-+|++++.++-|||=
T Consensus 41 ~~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP 73 (322)
T PRK15088 41 NAETLIEKYNAQLAKLDTSKGVLFLVDTWGGSP 73 (322)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 346677788888888877789999999999984
No 55
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=25.57 E-value=1.9e+02 Score=28.19 Aligned_cols=77 Identities=22% Similarity=0.307 Sum_probs=48.5
Q ss_pred HHHHHHHhhcCCCCceeEEeeCCCCcccCch-----HHHHHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHHHHHHh
Q 013037 120 DRIRKLADNCTGLQGFLVFNAVGGGTGSGLG-----SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSL 194 (451)
Q Consensus 120 d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~-----s~l~e~l~dey~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l 194 (451)
+++++.++. -+||....|..|-||.-.. ..+++++|..-..-....|+|-- .-...++
T Consensus 161 ~rl~~i~~~---a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~--------------~e~~~~v 223 (265)
T COG0159 161 ERLKKIAEA---ASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISS--------------PEQAAQV 223 (265)
T ss_pred HHHHHHHHh---CCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCC--------------HHHHHHH
Confidence 456666664 4599999999999998555 45566677654333345555521 1134556
Q ss_pred hccCCeeeeecchhhHhhhhc
Q 013037 195 LEHTDVAVLLDNEAIYDICRR 215 (451)
Q Consensus 195 ~e~~d~~i~~dN~~l~~~~~~ 215 (451)
.+.+|+||+= .++.+...+
T Consensus 224 ~~~ADGVIVG--SAiV~~i~~ 242 (265)
T COG0159 224 AEAADGVIVG--SAIVKIIEE 242 (265)
T ss_pred HHhCCeEEEc--HHHHHHHHh
Confidence 7779999883 455555533
No 56
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=25.48 E-value=58 Score=27.44 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcCC
Q 013037 113 EIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (451)
Q Consensus 113 ~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~~ 163 (451)
...+.+.+.|++.+++.....=++.=||+||+ ++..+.-.+....+.
T Consensus 45 ~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGa----lA~l~a~~l~~~~~~ 91 (140)
T PF01764_consen 45 SLYDQILDALKELVEKYPDYSIVITGHSLGGA----LASLAAADLASHGPS 91 (140)
T ss_dssp HHHHHHHHHHHHHHHHSTTSEEEEEEETHHHH----HHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHHhcccCccchhhccchHHH----HHHHHHHhhhhcccc
Confidence 56677888888888776654445566788554 556666666665543
No 57
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=25.31 E-value=1.3e+02 Score=31.99 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=25.4
Q ss_pred CCceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCC
Q 013037 132 LQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSP 175 (451)
Q Consensus 132 lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~~~~i~~~~v~P~~ 175 (451)
=.++-+.-++|+|+|| ||++|++ +-++++++.|..
T Consensus 115 ~g~iR~~LDvGcG~aS-F~a~l~~--------r~V~t~s~a~~d 149 (506)
T PF03141_consen 115 GGGIRTALDVGCGVAS-FGAYLLE--------RNVTTMSFAPND 149 (506)
T ss_pred CCceEEEEeccceeeh-hHHHHhh--------CCceEEEccccc
Confidence 3467899999999985 8988874 345666666653
No 58
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=24.95 E-value=1.5e+02 Score=30.19 Aligned_cols=82 Identities=18% Similarity=0.283 Sum_probs=61.8
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHHHH
Q 013037 112 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLST 191 (451)
Q Consensus 112 ~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl 191 (451)
.+..+++...++.+.|.-..--|..+..-.++|.+.|+|.-|+-.+.-++ .| -.+..-.++-+
T Consensus 216 ~~~v~~lD~~l~hfa~~~~~~~g~~v~~~pGaGAAGGmga~L~~~~~a~l----------~~-------Gi~iV~~~~~l 278 (378)
T COG1929 216 PEMVEELDQALSHFAEVLEQATGKDVIDVPGAGAAGGMGAGLLAFLQAEL----------KS-------GIEIVLEATNL 278 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhcCCCCccchhHHHHHHHHhhCcc----------cc-------cHHHHHHHhCH
Confidence 47778888899999888777777777777888888899999987776443 11 12344556678
Q ss_pred HHhhccCCeeee----ecchhhH
Q 013037 192 HSLLEHTDVAVL----LDNEAIY 210 (451)
Q Consensus 192 ~~l~e~~d~~i~----~dN~~l~ 210 (451)
....+-+|+||. +|++.+.
T Consensus 279 e~~v~daDLVITGEGr~D~Qs~~ 301 (378)
T COG1929 279 EDAVKDADLVITGEGRIDSQSLH 301 (378)
T ss_pred HHhhccCCEEEeCCCcccccccC
Confidence 888889999996 7777775
No 59
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=23.68 E-value=1.3e+02 Score=29.36 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=31.0
Q ss_pred CCCcccccccchhhHHHHH-HHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEE
Q 013037 101 NNFARGHYTIGKEIVDLCL-DRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTV 171 (451)
Q Consensus 101 nn~a~G~~~~g~~~~~~~~-d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~~~~i~~~~v 171 (451)
-.++.|||..+.+-.++.. .++...+|+++-=.| .=+-++|.|+| |++ ..+...| +..+.++.+
T Consensus 29 m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G-~~vLDiGcGwG-~~~----~~~a~~~-g~~v~gitl 93 (273)
T PF02353_consen 29 MKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPG-DRVLDIGCGWG-GLA----IYAAERY-GCHVTGITL 93 (273)
T ss_dssp ---S----SSTT--HHHHHHHHHHHHHTTTT--TT--EEEEES-TTS-HHH----HHHHHHH---EEEEEES
T ss_pred CCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCC-CEEEEeCCCcc-HHH----HHHHHHc-CcEEEEEEC
Confidence 4567778877766555554 468888888864444 45678888886 443 4455556 455555544
No 60
>COG2156 KdpC K+-transporting ATPase, c chain [Inorganic ion transport and metabolism]
Probab=23.18 E-value=1.5e+02 Score=27.21 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=44.6
Q ss_pred CCCCceeecccccc-c--cccCCccceecc------cccccCCCcccccccchhhHHHHHHHHHHHHhhcCCCCceeEEe
Q 013037 69 DLEPTVIDEVRTGT-Y--RQLFHPEQLISG------KEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFN 139 (451)
Q Consensus 69 D~e~~~i~~~~~~~-~--~~~~~~~~~~~~------~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~ 139 (451)
|-+++++.+-.-|+ + ..+||++-.... ..+.|.||+-+. +++.+.+...+..+ .+-+-...-.+..
T Consensus 46 ~~dg~vvGS~LIGQ~Ft~~~yFhgRPsa~~~~~yn~~aSggSNl~psN----p~L~~rv~~~~~~l-r~~~~~~~~~vP~ 120 (190)
T COG2156 46 DGDGKVVGSALIGQNFTSPGYFHGRPSATDGEPYNAVASGGSNLGPSN----PELLERVKARVAAL-RAENPVNDSEVPV 120 (190)
T ss_pred cCCCcEeehhhhccccCCCccccCCCcccCCCCCCccccCCcCCCCCC----HHHHHHHHHHHHHH-HhcCCCCCCCCCH
Confidence 66666665443332 1 134554432221 224456777663 45666666664333 3334556678888
Q ss_pred eCCCCcccCchHHH
Q 013037 140 AVGGGTGSGLGSLL 153 (451)
Q Consensus 140 sl~GGtGSG~~s~l 153 (451)
++.-..|||+=+.|
T Consensus 121 dlvt~SgSGLDP~I 134 (190)
T COG2156 121 DLVTASGSGLDPHI 134 (190)
T ss_pred HHHhccccCCCCCC
Confidence 88888899976554
No 61
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=22.47 E-value=2.2e+02 Score=27.74 Aligned_cols=67 Identities=24% Similarity=0.307 Sum_probs=37.7
Q ss_pred HHHHHHHhhcCCCCceeEEeeCCCCcccC--chHHH---HHHhhhhcCCcc-eeEEEEecCCCCCCccchhhHHHHHHHH
Q 013037 120 DRIRKLADNCTGLQGFLVFNAVGGGTGSG--LGSLL---LERLSVDYGKKS-KLGFTVYPSPQVSTSVVEPYNSVLSTHS 193 (451)
Q Consensus 120 d~ir~~~E~cD~lqgf~i~~sl~GGtGSG--~~s~l---~e~l~dey~~~~-i~~~~v~P~~~~~~~~~~~yN~~lsl~~ 193 (451)
++|++.++. .+||..+.|.-|=||.. +...+ ++.+|... +.+ .+.|+| ++.-....
T Consensus 158 eri~~i~~~---a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t-~~Pi~vGFGI--------------~~~e~~~~ 219 (263)
T CHL00200 158 SRIQKIARA---APGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT-NKPIILGFGI--------------STSEQIKQ 219 (263)
T ss_pred HHHHHHHHh---CCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc-CCCEEEECCc--------------CCHHHHHH
Confidence 455555554 46899999988888763 22222 33444422 222 223333 33334566
Q ss_pred hhcc-CCeeeee
Q 013037 194 LLEH-TDVAVLL 204 (451)
Q Consensus 194 l~e~-~d~~i~~ 204 (451)
+.+. +|++|.=
T Consensus 220 ~~~~GADGvVVG 231 (263)
T CHL00200 220 IKGWNINGIVIG 231 (263)
T ss_pred HHhcCCCEEEEC
Confidence 7778 9998873
No 62
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=21.81 E-value=52 Score=29.71 Aligned_cols=52 Identities=21% Similarity=0.376 Sum_probs=31.4
Q ss_pred cCChhhHHHHHHHHHHHHH--HhhcccceecccccccChhhHHHHHHHHHHHHHHHHHHc
Q 013037 379 SNSTSVAEVFSRIDHKFDL--MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 436 (451)
Q Consensus 379 ~Nst~i~~~l~~l~~~~~~--m~~~kAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~ 436 (451)
..=..|...+.+|.+-+.. =|..-.||+||+.|..+|.. .+.+|++.++-++
T Consensus 92 ehEq~vt~~I~~L~~~a~~~kD~~T~nFLqWfv~EQ~eEe~------l~~~I~d~~~~ag 145 (167)
T COG1528 92 EHEQKVTSSINELAEVAREEKDYATFNFLQWFVAEQVEEEK------LFKTILDKLELAG 145 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHcC
Confidence 3444455555555555444 35667899999999986643 3345555555443
No 63
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=21.72 E-value=77 Score=32.02 Aligned_cols=41 Identities=34% Similarity=0.580 Sum_probs=28.2
Q ss_pred HHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEE
Q 013037 124 KLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGF 169 (451)
Q Consensus 124 ~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~~~~i~~~ 169 (451)
+.++.+..+.|+-+..+.|||+|. ++..|--.||+...+++
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG~-----v~k~ll~~fp~ik~inf 207 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIGR-----VLKNLLSKYPHIKGINF 207 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHhH-----HHHHHHHhCCCCceeec
Confidence 346667778889999999888763 33333338988765554
No 64
>PTZ00489 glutamate 5-kinase; Provisional
Probab=21.49 E-value=3.7e+02 Score=26.12 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=29.4
Q ss_pred hhhhcCCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecch
Q 013037 157 LSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNE 207 (451)
Q Consensus 157 l~dey~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~ 207 (451)
..+.+.+..+.+.-+++....-....+..|+.-++..|.+. .+||+=|+
T Consensus 87 y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~--g~VPIine 135 (264)
T PTZ00489 87 YYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISH--KVIPIINE 135 (264)
T ss_pred HHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHC--CCEEEECC
Confidence 44555555566666666543223444455888888888876 56666443
No 65
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=21.46 E-value=2.7e+02 Score=28.93 Aligned_cols=90 Identities=16% Similarity=0.077 Sum_probs=52.8
Q ss_pred chhhHHHHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCCC-CccchhhHHHH
Q 013037 111 GKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS-TSVVEPYNSVL 189 (451)
Q Consensus 111 g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~~~~i~~~~v~P~~~~~-~~~~~~yN~~l 189 (451)
..+.+..+.+.|+..++ +..+||+|+|+.. | --.++..+..+-+..|+=.+++=+-.|....+ +.....++++.
T Consensus 121 tp~~w~~La~~I~~~~~--~~~dGvVVtHGTD--T-M~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av~ 195 (404)
T TIGR02153 121 KPEYWIKIAEAVAKALK--EGADGVVVAHGTD--T-MAYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAVR 195 (404)
T ss_pred CHHHHHHHHHHHHHHhh--cCCCcEEEecCCh--h-HHHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHHH
Confidence 45666777777777765 4468999999763 4 24666666665444444445555567765433 33343444443
Q ss_pred HHHHhhccCCeeeeecch
Q 013037 190 STHSLLEHTDVAVLLDNE 207 (451)
Q Consensus 190 sl~~l~e~~d~~i~~dN~ 207 (451)
. ..- ..+-..++|+++
T Consensus 196 ~-A~~-~~~gV~V~f~g~ 211 (404)
T TIGR02153 196 A-ATS-PIAEVTVVMHGE 211 (404)
T ss_pred H-HhC-CCCcEEEEECCc
Confidence 3 322 445566777665
No 66
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=21.19 E-value=53 Score=31.97 Aligned_cols=32 Identities=31% Similarity=0.551 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhcCCCCceeEEeeCCCCcccCchHHHHHH
Q 013037 117 LCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLER 156 (451)
Q Consensus 117 ~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~ 156 (451)
++++++|+.+++-..+ +++|.|+|++++..|.
T Consensus 2 eil~~l~~~i~~~~pI--------ig~gaGtGlsAk~ae~ 33 (268)
T PF09370_consen 2 EILDRLRAQIKAGKPI--------IGAGAGTGLSAKCAEK 33 (268)
T ss_dssp HHHHHHHHHHHTT--E--------EEEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCce--------EEEeeccchhhHHHHh
Confidence 5788899988875544 5678889999888754
No 67
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=21.14 E-value=2.4e+02 Score=27.19 Aligned_cols=75 Identities=24% Similarity=0.347 Sum_probs=41.1
Q ss_pred HHHHHHHhhcCCCCceeEEeeCCCCcccC--chHHHHHHhh---hhcCCcceeEEEEecCCCCCCccchhhHHHHHHHHh
Q 013037 120 DRIRKLADNCTGLQGFLVFNAVGGGTGSG--LGSLLLERLS---VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSL 194 (451)
Q Consensus 120 d~ir~~~E~cD~lqgf~i~~sl~GGtGSG--~~s~l~e~l~---dey~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l 194 (451)
++++..++ ...||..+.|..|-||.. +...+.+.++ ...+....+.++| ++.-....+
T Consensus 154 eri~~i~~---~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI--------------~~~e~~~~~ 216 (256)
T TIGR00262 154 ERLKQIAE---KSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGI--------------SKPEQVKQA 216 (256)
T ss_pred HHHHHHHH---hCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCC--------------CCHHHHHHH
Confidence 34445544 356889988888888763 5555655544 4322111111112 333345566
Q ss_pred hcc-CCeeeeecchhhHhhh
Q 013037 195 LEH-TDVAVLLDNEAIYDIC 213 (451)
Q Consensus 195 ~e~-~d~~i~~dN~~l~~~~ 213 (451)
.+. +|++++= .++.+..
T Consensus 217 ~~~GADgvVvG--Saiv~~~ 234 (256)
T TIGR00262 217 IDAGADGVIVG--SAIVKII 234 (256)
T ss_pred HHcCCCEEEEC--HHHHHHH
Confidence 777 8988774 4454433
No 68
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.72 E-value=2.9e+02 Score=25.06 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=41.2
Q ss_pred CcccccccchhhHHHHHHHHHHHHhhc--CCCCceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCC
Q 013037 103 FARGHYTIGKEIVDLCLDRIRKLADNC--TGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQ 176 (451)
Q Consensus 103 ~a~G~~~~g~~~~~~~~d~ir~~~E~c--D~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey~~~~i~~~~v~P~~~ 176 (451)
|..|-+..-....-.+.+.||+.+|.- +.+.=+++...+ |+- =-++-++..|+.+||+..+ ..+.|+..
T Consensus 12 felgiF~~k~p~~~~IKkai~~~l~~lleeGleW~litGqL--G~E-~WA~Evv~eLk~eyp~ik~--avitpFe~ 82 (180)
T COG4474 12 FELGIFKDKDPEVSYIKKAIKKKLEALLEEGLEWVLITGQL--GFE-LWAAEVVIELKEEYPHIKL--AVITPFEE 82 (180)
T ss_pred eeeccccCCCchHHHHHHHHHHHHHHHHhcCceEEEEeccc--cHH-HHHHHHHHHHHhhCCCeeE--EEEechhh
Confidence 444544443334445666666665542 456666776655 442 3566778889999986554 34567654
No 69
>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included []. The W2 domain has a globular fold and is exclusively composed out of alpha-helices [, , ]. The structure can be divided into a structural C-terminal core onto which the two N-terminal helices are attached. The core contains two aromatic/acidic residue-rich regions (AA boxes), which are important for mediating protein-protein interactions. For example, the W2 domain of H. sapiens eIF5 binds eIF2-beta, eIF3 and eIF1 [], and therefore plays an important role in multifactor complex assembly. The entry covers the entire W2 domain.; GO: 0005488 binding; PDB: 3D3M_A 3L6A_A 1PAQ_A 2FUL_D 2IU1_A 1UG3_B 3JUI_A.
Probab=20.44 E-value=65 Score=25.28 Aligned_cols=30 Identities=17% Similarity=0.470 Sum_probs=21.0
Q ss_pred ChhhHHHHHHHHHHHHH--Hhhcccceecccc
Q 013037 381 STSVAEVFSRIDHKFDL--MYAKRAFVHWYVG 410 (451)
Q Consensus 381 st~i~~~l~~l~~~~~~--m~~~kAflH~Y~~ 410 (451)
+..+.+.|..++..+.. +..--|++.||.+
T Consensus 18 ~~~~~~~~~~il~~LYd~Dil~Eeail~W~~~ 49 (84)
T PF02020_consen 18 NPNLMPLFPKILQQLYDEDILEEEAILEWYED 49 (84)
T ss_dssp TCGHGGHHHHHHHHHHHTTSS-HHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHhhhhhccHHHHHHHHHc
Confidence 44555666677776665 6778899999987
Done!