Query 013038
Match_columns 451
No_of_seqs 293 out of 1654
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 03:02:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a69_A Histone deacetylase 3,; 100.0 7E-114 2E-118 883.0 41.1 374 4-399 2-376 (376)
2 3max_A HD2, histone deacetylas 100.0 2E-111 8E-116 860.6 40.6 367 3-392 1-367 (367)
3 3ew8_A HD8, histone deacetylas 100.0 3E-109 1E-113 849.2 35.3 371 1-396 10-380 (388)
4 1c3p_A Protein (HDLP (histone 100.0 3.2E-92 1.1E-96 724.0 25.5 362 5-392 2-371 (375)
5 1zz1_A Histone deacetylase-lik 100.0 5.1E-86 1.7E-90 676.8 34.1 315 6-354 2-343 (369)
6 2vqm_A HD4, histone deacetylas 100.0 9.5E-86 3.2E-90 683.8 26.7 366 2-405 5-400 (413)
7 3q9b_A Acetylpolyamine amidohy 100.0 3.2E-83 1.1E-87 647.9 27.2 305 9-340 3-341 (341)
8 3men_A Acetylpolyamine aminohy 100.0 1.5E-82 5E-87 646.6 30.0 306 7-340 22-359 (362)
9 2pqp_A HD7A, histone deacetyla 100.0 1.9E-81 6.6E-86 647.5 31.4 351 5-394 36-418 (421)
10 4hf7_A Putative acylhydrolase; 74.7 2.6 8.8E-05 37.9 4.2 71 242-317 53-124 (209)
11 3hp4_A GDSL-esterase; psychrot 59.4 10 0.00035 32.5 4.7 65 242-318 41-110 (185)
12 4h08_A Putative hydrolase; GDS 58.8 27 0.00094 30.4 7.6 59 241-311 47-109 (200)
13 1ivn_A Thioesterase I; hydrola 57.2 30 0.001 29.8 7.5 65 242-317 37-105 (190)
14 3ced_A Methionine import ATP-b 56.5 7.5 0.00026 31.6 3.1 57 261-317 34-95 (98)
15 3p94_A GDSL-like lipase; serin 47.2 14 0.00047 32.1 3.5 69 242-318 49-121 (204)
16 3mil_A Isoamyl acetate-hydroly 46.0 46 0.0016 29.4 7.0 70 242-318 46-120 (240)
17 3d2m_A Putative acetylglutamat 45.5 22 0.00074 36.3 5.2 70 245-322 15-85 (456)
18 3bzw_A Putative lipase; protei 45.2 27 0.00093 32.4 5.5 48 242-292 61-109 (274)
19 3skv_A SSFX3; jelly roll, GDSL 42.7 1.3E+02 0.0045 30.0 10.5 52 265-318 237-290 (385)
20 2vpt_A Lipolytic enzyme; ester 42.0 23 0.0008 31.4 4.3 59 251-317 66-126 (215)
21 2q0q_A ARYL esterase; SGNH hyd 41.9 46 0.0016 28.9 6.3 50 265-318 75-138 (216)
22 1uf3_A Hypothetical protein TT 41.6 75 0.0026 27.8 7.7 51 260-319 21-71 (228)
23 2q8u_A Exonuclease, putative; 41.5 56 0.0019 31.4 7.3 59 254-319 44-104 (336)
24 1yzf_A Lipase/acylhydrolase; s 40.5 35 0.0012 28.9 5.1 66 242-318 42-111 (195)
25 3av0_A DNA double-strand break 40.4 61 0.0021 32.0 7.6 58 254-319 43-103 (386)
26 1es9_A PAF-AH, platelet-activa 39.0 22 0.00076 31.9 3.7 43 268-318 89-137 (232)
27 1ii7_A MRE11 nuclease; RAD50, 37.9 1.1E+02 0.0036 29.5 8.7 58 254-319 23-83 (333)
28 2qsw_A Methionine import ATP-b 37.5 4.9 0.00017 32.6 -1.0 56 262-317 38-97 (100)
29 3rjt_A Lipolytic protein G-D-S 35.8 9.5 0.00033 33.2 0.6 53 266-318 77-137 (216)
30 2buf_A Acetylglutamate kinase; 34.8 83 0.0028 30.2 7.3 63 254-323 8-70 (300)
31 3dci_A Arylesterase; SGNH_hydr 33.7 56 0.0019 29.2 5.6 42 265-310 93-139 (232)
32 3aek_B Light-independent proto 33.7 67 0.0023 33.6 6.8 56 259-325 72-128 (525)
33 1vjg_A Putative lipase from th 31.7 40 0.0014 29.7 4.1 70 243-318 60-136 (218)
34 2ap9_A NAG kinase, acetylgluta 31.5 45 0.0015 32.1 4.7 66 251-323 4-69 (299)
35 3dff_A Teicoplanin pseudoaglyc 30.6 51 0.0018 31.4 4.9 33 255-287 131-163 (273)
36 2qrr_A Methionine import ATP-b 30.5 23 0.00079 28.5 2.1 56 262-317 38-97 (101)
37 3dfi_A Pseudoaglycone deacetyl 28.9 60 0.0021 30.8 5.1 33 255-287 128-160 (270)
38 2o14_A Hypothetical protein YX 28.7 46 0.0016 33.0 4.4 69 242-317 202-275 (375)
39 3dhx_A Methionine import ATP-b 28.1 32 0.0011 28.1 2.6 54 262-315 36-93 (106)
40 1g3q_A MIND ATPase, cell divis 27.6 46 0.0016 29.7 3.8 19 159-177 27-45 (237)
41 3tho_B Exonuclease, putative; 27.3 1.2E+02 0.0042 29.8 7.3 58 253-319 25-86 (379)
42 3jug_A Beta-mannanase; TIM-bar 27.0 2.6E+02 0.0088 27.4 9.5 63 255-324 117-186 (345)
43 2whl_A Beta-mannanase, baman5; 25.9 2.1E+02 0.0071 26.7 8.3 65 255-324 94-163 (294)
44 3q9l_A Septum site-determining 25.7 52 0.0018 29.8 3.8 19 159-177 27-45 (260)
45 1fxw_F Alpha2, platelet-activa 24.3 78 0.0027 28.2 4.7 63 243-317 69-137 (229)
46 4fva_A 5'-tyrosyl-DNA phosphod 24.2 70 0.0024 28.1 4.3 19 263-281 35-53 (256)
47 1hyq_A MIND, cell division inh 23.9 59 0.002 29.6 3.9 18 160-177 28-45 (263)
48 3md9_A Hemin-binding periplasm 23.7 4E+02 0.014 23.9 10.3 56 268-341 55-110 (255)
49 2xdq_B Light-independent proto 23.1 90 0.0031 32.4 5.5 56 261-326 77-134 (511)
50 3t1i_A Double-strand break rep 23.0 2E+02 0.0069 29.4 8.0 47 254-308 54-100 (431)
51 2z08_A Universal stress protei 22.4 1.9E+02 0.0064 23.1 6.4 46 263-317 90-136 (137)
52 3ea0_A ATPase, para family; al 22.0 50 0.0017 29.6 2.9 22 159-180 29-51 (245)
53 2rd5_A Acetylglutamate kinase- 21.6 48 0.0016 31.9 2.8 63 253-322 17-79 (298)
54 3hgm_A Universal stress protei 21.4 1.7E+02 0.0059 23.4 6.0 45 264-317 102-147 (147)
55 2xdq_A Light-independent proto 21.1 1E+02 0.0034 31.3 5.3 70 260-340 85-156 (460)
56 4f1h_A Tyrosyl-DNA phosphodies 21.0 91 0.0031 26.7 4.3 18 263-280 25-42 (250)
57 1szn_A Alpha-galactosidase; (b 20.9 1.5E+02 0.0051 30.0 6.4 67 250-316 25-95 (417)
58 3dc7_A Putative uncharacterize 20.7 55 0.0019 29.0 2.9 48 271-318 81-136 (232)
59 3kjh_A CO dehydrogenase/acetyl 20.6 65 0.0022 28.7 3.3 25 258-283 118-142 (254)
60 4hwg_A UDP-N-acetylglucosamine 20.5 1.9E+02 0.0064 28.6 7.0 50 254-321 77-126 (385)
61 1y80_A Predicted cobalamin bin 20.3 1.6E+02 0.0054 26.4 5.9 47 266-323 133-182 (210)
62 4gz1_A Tyrosyl-DNA phosphodies 20.0 96 0.0033 27.1 4.3 18 263-280 31-48 (256)
63 3fdx_A Putative filament prote 20.0 2.1E+02 0.0073 22.7 6.3 45 264-317 98-142 (143)
No 1
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.8e-114 Score=883.02 Aligned_cols=374 Identities=60% Similarity=1.151 Sum_probs=358.6
Q ss_pred CCeEEEEEcccccCCCCCCCCCCChHHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHHccCchHHHHHHHHhCCCchhhh
Q 013038 4 KDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLF 83 (451)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~eL~~~Hs~~Yi~~l~~~~~~~~~~~ 83 (451)
|+||+|+|||++++|.+|++|||+|.|+++++++|+++||++.+++++|++||.++|++||+++||++|++.++......
T Consensus 2 ~~~~~~~y~~~~~~~~~g~~HPe~p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~ 81 (376)
T 4a69_A 2 AKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGF 81 (376)
T ss_dssp CCCEEEECCTTTTCCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGGGG
T ss_pred CCeEEEEEChHHhCcCCCCCCCcCHHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccchhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999887665544
Q ss_pred HhhhhccccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCCcceeeecCCCCCCccccCCCCccccchHHHHHHHHHHhC
Q 013038 84 RQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYH 163 (451)
Q Consensus 84 ~~~~~~~~l~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ai~~~GG~HHA~~~~asGFC~vNdvaiai~~ll~~~ 163 (451)
.+...+|+++.|||+|+++|++|++++||+|.||++|++|++++||||+||+|||++++|+||||||||||||++|++++
T Consensus 82 ~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~~~ 161 (376)
T 4a69_A 82 TKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYH 161 (376)
T ss_dssp HHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTC
T ss_pred hhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHHhC
Confidence 55566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcccccCCCccccccccccchhhhcccccchhhhccCCCceEEEEeeeccCCCCCCCCCCCCccCCCCCcceEE
Q 013038 164 ARVLYIDIDVHHGDGVEEAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAI 243 (451)
Q Consensus 164 ~RVl~IDiDvHHGDGtqe~F~~~~r~~~~~~~~~~~~~~~~~~~~~~VltiSiH~~~~~ffPgtG~~~~~G~g~G~~~~v 243 (451)
+||||||||||||||||+|||++++ |||+|||+++..||||||..+++|.++|++|++
T Consensus 162 ~RV~ivD~DvHHGnGtq~iF~~d~~----------------------Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~v 219 (376)
T 4a69_A 162 PRVLYIDIDIHHGDGVQEAFYLTDR----------------------VMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCL 219 (376)
T ss_dssp SCEEEEECSSSCCHHHHHHTTTCSS----------------------EEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEE
T ss_pred CcEEEEeccCCCCcchhhHhcCCCC----------------------EEEEecccCCCcCCCCCCCccccCCCCCCceeE
Confidence 9999999999999999999999999 999999999888999999999999999999999
Q ss_pred eecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEcCCCCC
Q 013038 244 NVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYT 323 (451)
Q Consensus 244 NvPL~~g~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~~~l~~~~~p~l~lggGGY~ 323 (451)
||||++|++|++|+.+|+++|.|++++|+||+||+|||||+|.+||||+|+||.+||++|+++++++++|+++||||||+
T Consensus 220 NvPL~~G~~D~~yl~~~~~~l~p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l~~~~~p~v~v~eGGY~ 299 (376)
T 4a69_A 220 NVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYT 299 (376)
T ss_dssp EEEECTTCBHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHHHTTCCCEEEECCCCCS
T ss_pred eeecCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHhhhhcCCCCCCCCCchhhhhhcCCCCCCCC-CCCCCCCCcHHHHHHHHHHHHHhhhcCCCCCCcc
Q 013038 324 KENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIP-NGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQ 399 (451)
Q Consensus 324 ~~~var~w~~~t~~llg~~~~~~iP~~~~~~~~~p~~~l~~~-~~~~~~~n~~~~l~~~~~~~~~~~~~~~~~~~v~ 399 (451)
+++++|||+++|++++|.++|++||+++|++||+|+|+|+++ +++|+|+|+++||++|+++|+||||+|++|||||
T Consensus 300 ~~~var~w~~~~a~l~g~~~~~~~P~~~~~~~~~p~~~l~~~~~~~~~~~n~~~~l~~~~~~~~~~l~~~~~~p~~~ 376 (376)
T 4a69_A 300 VRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQ 376 (376)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSBCCCCTTGGGGTTTCBSSCCCCCCSCCCCCHHHHHHHHHHHHHHHHTTC------
T ss_pred hhHHHHHHHHHHHHhcCCCccCCCCCchHHHHhCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 999999999999999999999999999999999999999998 8999999999999999999999999999999998
No 2
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.4e-111 Score=860.60 Aligned_cols=367 Identities=62% Similarity=1.184 Sum_probs=355.8
Q ss_pred CCCeEEEEEcccccCCCCCCCCCCChHHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHHccCchHHHHHHHHhCCCchhh
Q 013038 3 SKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHL 82 (451)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~eL~~~Hs~~Yi~~l~~~~~~~~~~ 82 (451)
.|+||+|+|||++++|+||++|||+|.|+++++++|+++||++.+++++|++||.++|++||+++||++|++.++.+...
T Consensus 1 ~~~~v~~~y~~~~~~~~~g~~HPe~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~ 80 (367)
T 3max_A 1 AKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSE 80 (367)
T ss_dssp CCCCEEEECCGGGGGCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCGGGGGG
T ss_pred CCCeEEEEECccccCcCCCCCCCCCHHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhhCCHHHHHHHHHhCccccch
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999988766544
Q ss_pred hHhhhhccccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCCcceeeecCCCCCCccccCCCCccccchHHHHHHHHHHh
Q 013038 83 FRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKY 162 (451)
Q Consensus 83 ~~~~~~~~~l~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ai~~~GG~HHA~~~~asGFC~vNdvaiai~~ll~~ 162 (451)
..++..+|+++.|||+|+++|++|+++|||||.||+++++++.++||||+||+|||++++|+||||||||||||++|++.
T Consensus 81 ~~~~~~~~~l~~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~~~~~Ai~~pgG~HHA~~~~a~GFC~~NdvaiAa~~l~~~ 160 (367)
T 3max_A 81 YSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKY 160 (367)
T ss_dssp CHHHHHHTTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBCSCHHHHHHHHHTTT
T ss_pred hhhHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCcceEecCCCCCCcCCcCCCCCchhhhHHHHHHHHHHHc
Confidence 44556779999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcEEEEEcccccCCCccccccccccchhhhcccccchhhhccCCCceEEEEeeeccCCCCCCCCCCCCccCCCCCcceE
Q 013038 163 HARVLYIDIDVHHGDGVEEAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYA 242 (451)
Q Consensus 163 ~~RVl~IDiDvHHGDGtqe~F~~~~r~~~~~~~~~~~~~~~~~~~~~~VltiSiH~~~~~ffPgtG~~~~~G~g~G~~~~ 242 (451)
++||+|||||||||||||++||++++ |||+|||+++. ||||||..+++|.++|++|+
T Consensus 161 ~~RV~ivD~DvHHGnGtq~iF~~d~~----------------------Vl~~S~H~~~~-~fPgtg~~~e~G~g~g~g~~ 217 (367)
T 3max_A 161 HQRVLYIDIDIHHGDGVEEAFYTTDR----------------------VMTVSFHKYGE-YFPGTGDLRDIGAGKGKYYA 217 (367)
T ss_dssp CSCEEEEECSSSCCHHHHHHTTTCSS----------------------EEEEEEEECSS-CTTCCCCTTCCCCGGGTTCE
T ss_pred CCcEEEEecCCCCCchhhHHhcCCCC----------------------EEEEecccCCC-CCCCCCCccccCCCCCCceE
Confidence 99999999999999999999999999 99999999975 99999999999999999999
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 013038 243 INVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY 322 (451)
Q Consensus 243 vNvPL~~g~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~~~l~~~~~p~l~lggGGY 322 (451)
+||||++|++|++|+.+|+++|.|++++|+||+||+|||||++.+||||+|+||.+||.+|+++++++++|+++||||||
T Consensus 218 vNvPL~~g~~d~~y~~~~~~~~~~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~g~~~~~~~~~~~~~p~v~~~eGGY 297 (367)
T 3max_A 218 VNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGY 297 (367)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHHHHHHHHHTTCCCEEEECCCCC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCcCCCCCCCeeeCHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhHHHHHHhhhhcCCCCCCCCCchhhhhhcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhcC
Q 013038 323 TKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI 392 (451)
Q Consensus 323 ~~~~var~w~~~t~~llg~~~~~~iP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~~~~~~~~~~~~~ 392 (451)
++++|+|||+++|++++|.++|+++|+|+||+||+|+|+|++++++|+|+|+++||++|+++|+||||+|
T Consensus 298 ~~~~var~wt~~ta~~~~~~i~~~~p~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~~ 367 (367)
T 3max_A 298 TIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRML 367 (367)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCCSBCCCCTTGGGGTTTCBSSCCCCSCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred ChhHHHHHHHHHHHHHhhcccccCCCchhhHHhhCCCeeccCCcccccCCCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999975
No 3
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=3e-109 Score=849.16 Aligned_cols=371 Identities=40% Similarity=0.767 Sum_probs=348.4
Q ss_pred CCCCCeEEEEEcccccCCCCCCCCCCChHHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHHccCchHHHHHHHHhCCCch
Q 013038 1 MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQ 80 (451)
Q Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~eL~~~Hs~~Yi~~l~~~~~~~~ 80 (451)
|.+|+||+|+|||++++| +.+|||+|.|+++++++|+++||++.+++++|++||.++|++||+++||++|++.++...
T Consensus 10 ~~~~~~~~~~y~~~~~~~--~~~HPe~P~Rl~~i~~ll~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~ 87 (388)
T 3ew8_A 10 SGQSLVPVYIYSPEYVSM--CDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGD 87 (388)
T ss_dssp ----CCCEEECCHHHHHH--HTTCTTSTTHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHC-
T ss_pred cCCCCcEEEEEChHHhcc--CCCCCCCcHHHHHHHHHHHHcCCcccCeEeCCCCCCHHHHHhhCCHHHHHHHHHhccccc
Confidence 357899999999999986 467999999999999999999999999999999999999999999999999998765332
Q ss_pred hhhHhhhhccccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCCcceeeecCCCCCCccccCCCCccccchHHHHHHHHH
Q 013038 81 HLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELL 160 (451)
Q Consensus 81 ~~~~~~~~~~~l~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ai~~~GG~HHA~~~~asGFC~vNdvaiai~~ll 160 (451)
. ...+..+|+++.|||+|+++|++|++++||+|.||+++++|++++||||+||+|||++++|+||||||||||||++|+
T Consensus 88 ~-~~~~~~~~~lg~Dtp~~~~~~e~a~~aaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~~NdiaiAa~~l~ 166 (388)
T 3ew8_A 88 D-DHPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLR 166 (388)
T ss_dssp --------CCSCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHT
T ss_pred c-cchhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHcCCCceeeecCCcccceeecCCCCchhhhHHHHHHHHHH
Confidence 1 122345789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcEEEEEcccccCCCccccccccccchhhhcccccchhhhccCCCceEEEEeeeccCCCCCCCCCCCCccCCCCCcc
Q 013038 161 KYHARVLYIDIDVHHGDGVEEAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKF 240 (451)
Q Consensus 161 ~~~~RVl~IDiDvHHGDGtqe~F~~~~r~~~~~~~~~~~~~~~~~~~~~~VltiSiH~~~~~ffPgtG~~~~~G~g~G~~ 240 (451)
+..+||||||||||||||||+|||++++ |||+|||+++.+||||||..+++|.|+|++
T Consensus 167 ~~~~RV~ivD~DvHHGnGtq~iF~~d~~----------------------Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g 224 (388)
T 3ew8_A 167 RKFERILYVDLDLHHGDGVEDAFSFTSK----------------------VMTVSLHKFSPGFFPGTGDVSDVGLGKGRY 224 (388)
T ss_dssp TTCSCEEEEECSSSCCHHHHHHTTTCSS----------------------EEEEEEEECCTTCTTCCCCTTCCCCGGGTT
T ss_pred hcCCeEEEEecCCCCChhHHHHhccCCC----------------------EEEEecCCCCCCCCCCCCCcccccCCCCcc
Confidence 9899999999999999999999999999 999999999878999999999999999999
Q ss_pred eEEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEcCC
Q 013038 241 YAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGG 320 (451)
Q Consensus 241 ~~vNvPL~~g~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~~~l~~~~~p~l~lggG 320 (451)
|++||||++|++|++|+.+|+++|.|++++|+||+||+|||||++.+||||+|+||.+||++|+++|+++++|+++|+||
T Consensus 225 ~~vNvPL~~G~~d~~y~~~~~~~l~p~~~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~~~p~l~~~gG 304 (388)
T 3ew8_A 225 YSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGG 304 (388)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eeeeccCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhHHHHHHhhhhcCCCCCCCCCchhhhhhcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhcCCCCC
Q 013038 321 GYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAP 396 (451)
Q Consensus 321 GY~~~~var~w~~~t~~llg~~~~~~iP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~~~~~~~~~~~~~~~~~ 396 (451)
||++++|+|||+++|++|+|.++|++||+++||++|+|+|+|++++++|+|+|+++||++|+++|++|||+|++-.
T Consensus 305 GY~~~~var~w~~~~~~l~g~~l~~~lP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~~~~~~ 380 (388)
T 3ew8_A 305 GYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVVIEG 380 (388)
T ss_dssp CCSHHHHHHHHHHHHHHHHTCCCCSBCCCCTTGGGGTTTCBSCCCCCSCCCCCCHHHHHHHHHHHHHHHTTCCC--
T ss_pred CCChhHHHHHHHHHHHHHcCCCCCCCCCcccchhhcCCCccccCCcccCCCCCCHHHHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988653
No 4
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=3.2e-92 Score=724.04 Aligned_cols=362 Identities=31% Similarity=0.456 Sum_probs=320.9
Q ss_pred CeEEEEEcccccCCCCCCCCCCChHHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHHccCchHHHHHHHHhCCCchhhhH
Q 013038 5 DKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFR 84 (451)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~eL~~~Hs~~Yi~~l~~~~~~~~~~~~ 84 (451)
++++|+|||+|..|.+++.|||+|.|+++++++|+++||++.+++++|++||.++|++||+++||++|++.++.... ..
T Consensus 2 ~~t~~vy~~~~~~h~~g~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~at~~~l~~vH~~~Yv~~l~~~~~~~~~-~~ 80 (375)
T 1c3p_A 2 KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCV-PK 80 (375)
T ss_dssp CCEEEEECGGGGGSCCCTTCGGGSCCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSC-CT
T ss_pred ceEEEEECHHHcCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCeEeCCCCCCHHHHHHhCCHHHHHHHHHhccccCC-Ch
Confidence 46899999999999999999999999999999999999999999999999999999999999999999987542110 01
Q ss_pred hhhhcccc-CCCCCCCcchHHHHHHHHhHHHHHHHHHHcCCcceeeecCCCCCCccccCCCCccccchHHHHHHHHHHhC
Q 013038 85 QELTKYNL-GEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYH 163 (451)
Q Consensus 85 ~~~~~~~l-~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ai~~~GG~HHA~~~~asGFC~vNdvaiai~~ll~~~ 163 (451)
+...+|++ +.|||+|+++|+++++++||+|.||+++++|+ +||||+||+|||++++|+||||||||||||++|++++
T Consensus 81 ~~~~~~~l~~~dtp~~~~~~~~a~~aaGg~l~aa~~v~~g~--~a~~ppGG~HHA~~~~a~GFC~fNnvAiAa~~l~~~g 158 (375)
T 1c3p_A 81 GAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGN--VAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKG 158 (375)
T ss_dssp THHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTC--EEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHTT
T ss_pred HHhhccccCCCCcccChhHHHHHHHHhhHHHHHHHHHHcCC--ceeecCcccceeeeccCCCceeecHHHHHHHHHHHhC
Confidence 22356777 57999999999999999999999999999997 8999999999999999999999999999999999886
Q ss_pred -CcEEEEEcccccCCCccccccccccchhhhcccccchhhhccCCCceEEEEeeeccCCCCCCCCCCCCccC-CCCCcce
Q 013038 164 -ARVLYIDIDVHHGDGVEEAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIG-EREGKFY 241 (451)
Q Consensus 164 -~RVl~IDiDvHHGDGtqe~F~~~~r~~~~~~~~~~~~~~~~~~~~~~VltiSiH~~~~~ffPgtG~~~~~G-~g~G~~~ 241 (451)
+||+|||||||||||||+|||++++ |||+|||+++..||||||..+++| .|+|++|
T Consensus 159 ~~RV~IvD~DvHHGnGtq~iF~~dp~----------------------Vl~~SiH~~~~~ffPgtG~~~e~G~~g~g~g~ 216 (375)
T 1c3p_A 159 FKRILYIDLDAHHCDGVQEAFYDTDQ----------------------VFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGY 216 (375)
T ss_dssp CCCEEEEECSSSCCHHHHHHHTTCSS----------------------EEEEEEEECTTTSTTSSSCCTTCCCCGGGTTS
T ss_pred CCeEEEEecCCCCCHHHHHHhccCCC----------------------EEEEecccCCCCCCCCCCCccccCCcCCCCce
Confidence 6999999999999999999999999 999999999988999999999999 9999999
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEcCCC
Q 013038 242 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGG 321 (451)
Q Consensus 242 ~vNvPL~~g~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~~~l~~~~~p~l~lggGG 321 (451)
++|||||+|++|++|+.+|+++|.|++++|+||+||+|||||+|.+||||.|+||.++|.+++++++++..|++++||||
T Consensus 217 ~vNvPL~~g~~D~~yl~a~~~~l~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~vv~vleGG 296 (375)
T 1c3p_A 217 NLNIPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGG 296 (375)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHHCSCEEECCCC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHHhccceEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhHHHHHHhhhhcCCCCCCCCCchhhhhhc-CCCCC---CC-CCCCCCCCCcHHHHHHHHHHHHHhhhcC
Q 013038 322 YTKENVARCWTVETGILLDTELPNEIPENEYIKYFA-PECSL---RI-PNGHIENLNSKSYLSTIKMQVLENLRSI 392 (451)
Q Consensus 322 Y~~~~var~w~~~t~~llg~~~~~~iP~~~~~~~~~-p~~~l---~~-~~~~~~~~n~~~~l~~~~~~~~~~~~~~ 392 (451)
|++.++++||++++++|+|.++|+.||+ .|.+++. .+++. .. ++.++.++++......++..|.+.++.|
T Consensus 297 Y~~~~l~~~~~~~~~~l~g~~~~~~lp~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~ 371 (375)
T 1c3p_A 297 YHPYALARAWTLIWCELSGREVPEKLNN-KAKELLKSIDFEEFDDEVDRSYMLETLKDPWRGGEVRKEVKDTLEKA 371 (375)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCCSSCCH-HHHHHHHHSCCCCSSTTCCCGGGGGCSSCCCCCCCCCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHcCCCCCccCCH-HHHHHHHhcCcccccCCCChHHhhhhhccCCCCCchHHHHHHHHHHH
Confidence 9999999999999999999999999996 3444443 23321 12 2234455544444444555555555544
No 5
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=5.1e-86 Score=676.77 Aligned_cols=315 Identities=24% Similarity=0.361 Sum_probs=295.6
Q ss_pred eEEEEEcccccCCCCCCC----------------CCCChHHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHHccCchHHH
Q 013038 6 KISYFYDGDVGSVYFGPN----------------HPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYV 69 (451)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~----------------HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~eL~~~Hs~~Yi 69 (451)
+++|+|||+|..|.++.. |||+|.|+++++++|+++|+++.+++++|++|+.++|++||+++||
T Consensus 2 ~t~~~y~~~~~~h~~~~~~~~~~~~g~~~~~~~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~~~l~~vH~~~Yv 81 (369)
T 1zz1_A 2 AIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHL 81 (369)
T ss_dssp CEEEECCGGGGGCCCCSSSSSCCBTTTTBCCCSSCTTCTHHHHHHHHHHHHTTGGGGSEECCCCCCCHHHHHTTSCHHHH
T ss_pred eEEEEEchHHcccCCCCcccccccccccccccCCCCCCHHHHHHHHHHHHhcCCCccceEeCCCcCCHHHHHHhccHHHH
Confidence 689999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCchhhhHhhhhccccCC-CCCCCcchHHHHHHHHhHHHHHHHHHHcCCcce--eeecCCCCCCccccCCCCc
Q 013038 70 EFLHRITPDTQHLFRQELTKYNLGE-DCPVFENLFEFCQIYAGGTIDAARRLNNQLCDI--AINWAGGLHHAKKCEASGF 146 (451)
Q Consensus 70 ~~l~~~~~~~~~~~~~~~~~~~l~~-D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~--Ai~~~GG~HHA~~~~asGF 146 (451)
++|++.++. ...+.++. |||+++++++++++++||++.|++++++|+++. |++|||| |||++++++||
T Consensus 82 ~~l~~~~~~--------~~~~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~~~afa~~rppG-HHA~~~~a~GF 152 (369)
T 1zz1_A 82 ENMKRVSNL--------PTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPG-HHAPHNAAMGF 152 (369)
T ss_dssp HHHHHHHHS--------TTCEECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSCSEEEECCSSCC-TTCCTTCCBTT
T ss_pred HHHHHhCcc--------ccceecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEecCCc-cCcCCCCCCCc
Confidence 999987531 01344777 999999999999999999999999999998764 6789999 99999999999
Q ss_pred cccchHHHHHHHHHHhC--CcEEEEEcccccCCCccccccccccchhhhcccccchhhhccCCCceEEEEeeeccCCCCC
Q 013038 147 CYINDLVLGILELLKYH--ARVLYIDIDVHHGDGVEEAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFF 224 (451)
Q Consensus 147 C~vNdvaiai~~ll~~~--~RVl~IDiDvHHGDGtqe~F~~~~r~~~~~~~~~~~~~~~~~~~~~~VltiSiH~~~~~ff 224 (451)
|+|||+||||++|++++ +||+|||||||||||||+|||++++ |||+|||+++ ||
T Consensus 153 C~fNnvAiAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~----------------------Vl~~SiH~~~--~y 208 (369)
T 1zz1_A 153 CIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPS----------------------VLTISLHQHL--CF 208 (369)
T ss_dssp BSSCHHHHHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTT----------------------EEEEEEEETT--SS
T ss_pred hHhhHHHHHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCC----------------------EEEEeccCCC--CC
Confidence 99999999999999874 8999999999999999999999999 9999999996 89
Q ss_pred C-CCCCCCccCCCCCcceEEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHH
Q 013038 225 P-GTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAEC 303 (451)
Q Consensus 225 P-gtG~~~~~G~g~G~~~~vNvPL~~g~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~ 303 (451)
| +||..+++|.++|++|++|||||+|++|++|+.+|++++.|++++|+||+||+|||||+|.+||||.++||.++|.++
T Consensus 209 P~~tG~~~e~G~g~g~g~~vNvPL~~g~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~ 288 (369)
T 1zz1_A 209 PPDSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQM 288 (369)
T ss_dssp STTCCCTTCCCCGGGTTCEEEEEECTTCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHH
T ss_pred CCCCCcccccCCCCCCceEEeeecCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHH
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-----CCCEEEEcCCCCCcchhhhHHHHHHhhhhcCCCCCCCCCchhhh
Q 013038 304 VRFVKKF-----NLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIK 354 (451)
Q Consensus 304 ~~~l~~~-----~~p~l~lggGGY~~~~var~w~~~t~~llg~~~~~~iP~~~~~~ 354 (451)
++.|+++ ++|+++++||||+.+++++||++++++|+|.++ ...|.+++++
T Consensus 289 ~~~l~~~a~~~~~g~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~-~~~p~~~~~~ 343 (369)
T 1zz1_A 289 ARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRS-LPDPYHEFLA 343 (369)
T ss_dssp HHHHHHHHHHHSTTCEEEEECCCCCTTTHHHHHHHHHHHHHCCCC-CCCTTHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCccHHHHHHHHHHHHHhCCCC-CCCchhHHHh
Confidence 9998764 799999999999999999999999999999887 5666666655
No 6
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=9.5e-86 Score=683.84 Aligned_cols=366 Identities=22% Similarity=0.333 Sum_probs=314.1
Q ss_pred CCCCeEEEEEcccccCCCCC----CCCCCChHHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHHccCchHHHHHHHHhCC
Q 013038 2 RSKDKISYFYDGDVGSVYFG----PNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITP 77 (451)
Q Consensus 2 ~~~~~v~~~~~~~~~~~~~~----~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~eL~~~Hs~~Yi~~l~~~~~ 77 (451)
.++++|+++||++|..|..+ ..|||+|.|+++++++|+++||.+.+++++|++||.++|++||+++||++++....
T Consensus 5 ~p~~~Tg~vyd~~~l~H~~~~g~~~~HPE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~eeL~~vHs~~Yv~~~~~~~~ 84 (413)
T 2vqm_A 5 KPRFTTGLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPL 84 (413)
T ss_dssp -CCSSEEEECCGGGCSCCCTTC-------CCCHHHHHHHHHHHHTHHHHSEEECCCCCCHHHHTTTSCHHHHHHHHSCGG
T ss_pred CCCCeEEEEEcHHHhccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCeEeCCCCCCHHHHHHhCCHHHHHHHhcCch
Confidence 35679999999999999865 45999999999999999999999999999999999999999999999987764322
Q ss_pred Cchhh----h----Hhh-----hhccccCCCCCCCc-chHHHHHHHHhHHHHHHHHHHcCCccee--eecCCCCCCcccc
Q 013038 78 DTQHL----F----RQE-----LTKYNLGEDCPVFE-NLFEFCQIYAGGTIDAARRLNNQLCDIA--INWAGGLHHAKKC 141 (451)
Q Consensus 78 ~~~~~----~----~~~-----~~~~~l~~D~p~f~-~l~~~~~~~aGgsl~aa~~l~~g~~~~A--i~~~GG~HHA~~~ 141 (451)
..... . ... ...+.++.|+.+.. ++++++++++|+++.|++++++|+++.| ++++|| |||+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~aA~laaG~~l~a~~~v~~g~~~~afa~vrppG-HHA~~~ 163 (413)
T 2vqm_A 85 NRQKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPG-HHAEES 163 (413)
T ss_dssp GGCC----HHHHHHHHHEEECTTSCEEECTTSTHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCCSCC-TTCBTT
T ss_pred hhhHhhhhhhccchhhhhhccccCCcCccCCccccchhHHHHHHHHHHHHHHHHHHHhcCCccceeeeccccc-ccCcCC
Confidence 11100 0 000 01123444554433 6788999999999999999999998765 456777 999999
Q ss_pred CCCCccccchHHHHHHHHHHhC--CcEEEEEcccccCCCccccccccccchhhhcccccchhhhccCCCceEEEEeeecc
Q 013038 142 EASGFCYINDLVLGILELLKYH--ARVLYIDIDVHHGDGVEEAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKF 219 (451)
Q Consensus 142 ~asGFC~vNdvaiai~~ll~~~--~RVl~IDiDvHHGDGtqe~F~~~~r~~~~~~~~~~~~~~~~~~~~~~VltiSiH~~ 219 (451)
+|+||||||||||||++|++.+ +||||||||||||||||+|||++++ |||+|||++
T Consensus 164 ~a~GFC~~Nnvaiaa~~~~~~~~~~RV~ivD~DvHHGnGtq~iF~~d~~----------------------Vl~~S~H~~ 221 (413)
T 2vqm_A 164 TPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPS----------------------VLYMSLHRY 221 (413)
T ss_dssp BCBTTBSSCHHHHHHHHHHHHSCCSCEEEEECSSSCCHHHHHHHTTCTT----------------------EEEEEEEEC
T ss_pred CCCCccccchHHHHHHHHHHhcCCCeEEEEecccCCCccHHHHHhcCcc----------------------cccccchhc
Confidence 9999999999999999998865 8999999999999999999999999 999999998
Q ss_pred C-CCCCCCCCCCCccCCCCCcceEEeecCCC----CCChHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCC--CCCCc
Q 013038 220 G-DLFFPGTGDVKEIGEREGKFYAINVPLKD----GIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAG--DRLGC 292 (451)
Q Consensus 220 ~-~~ffPgtG~~~~~G~g~G~~~~vNvPL~~----g~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~g--DplG~ 292 (451)
+ ..||||||..+++|.++|.+|++||||+. +++|++|+.+|+++|.|++++|+||+||+|||||++.+ ||||+
T Consensus 222 ~~~~f~pgtG~~~e~G~g~g~g~~~n~pl~~g~~~~~~D~~y~~~~~~~v~p~~~~f~PdlivvsaG~Da~~~d~D~lg~ 301 (413)
T 2vqm_A 222 DDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGG 301 (413)
T ss_dssp GGGCSTTCCCCTTCCCSGGGTTCEEEEEECSCSSSCCCHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBSSCTTTTCC
T ss_pred cCCCCCCCCCCHHHcCCCcccccccccccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcCCCCCCCCC
Confidence 4 35999999999999999999999999874 58899999999999999999999999999999999999 66999
Q ss_pred cccCHHHHHHHHHHHHhc-CCCEEEEcCCCCCcchhhhHHHHHHhhhhcCCCCCCCCCchhhhhhcCCCCCCCCCCCCCC
Q 013038 293 FNLSIDGHAECVRFVKKF-NLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIEN 371 (451)
Q Consensus 293 ~nLs~~g~~~~~~~l~~~-~~p~l~lggGGY~~~~var~w~~~t~~llg~~~~~~iP~~~~~~~~~p~~~l~~~~~~~~~ 371 (451)
|+||.++|++++++|+++ ++|++++|||||+++++++||++++++|+|.+++ .+|+.. ....+|
T Consensus 302 ~~lt~~~~~~~~~~l~~~a~~~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~-~~p~~~--------------~~~~p~ 366 (413)
T 2vqm_A 302 YNLSARCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELD-PLPEKV--------------LQQRPN 366 (413)
T ss_dssp CCBCHHHHHHHHHHHHTSGGGCEEEEECCCCCHHHHHHHHHHHHHHHTTCCCC-CCCHHH--------------HHCCCC
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCcCCChHHHHHHHHHHHHHHcCCCCC-CCChhh--------------hhcCCC
Confidence 999999999999999998 8999999999999999999999999999998875 455321 112458
Q ss_pred CCcHHHHHHHHHHHHHhhhcCCCCCCcccccCCC
Q 013038 372 LNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPP 405 (451)
Q Consensus 372 ~n~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~p~ 405 (451)
.|+.++|+++++...+.|+.|+.+|+++++.++.
T Consensus 367 ~~~~~~~~~v~~~~~~~W~~l~~~~~~~~~~~~~ 400 (413)
T 2vqm_A 367 ANAVRSMEKVMEIHSKYWRCLQRTTSTAGRSLIE 400 (413)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGTSCCCCTTSCHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhhhcchhhcCcCcch
Confidence 8899999999999999999999999999987544
No 7
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=3.2e-83 Score=647.89 Aligned_cols=305 Identities=20% Similarity=0.290 Sum_probs=281.2
Q ss_pred EEEcccccCCCCCC--------CCCCChHHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHHccCchHHHHHHHHhCCCch
Q 013038 9 YFYDGDVGSVYFGP--------NHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQ 80 (451)
Q Consensus 9 ~~~~~~~~~~~~~~--------~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~eL~~~Hs~~Yi~~l~~~~~~~~ 80 (451)
++|||++..|..+. .|||+|.|+++++++|+++||. ++++|++||.++|++||+++||++|++.++...
T Consensus 3 ~v~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl~---~~~~p~~at~e~L~~vHs~~Yi~~l~~~~~~~~ 79 (341)
T 3q9b_A 3 VIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAVKEAGFD---DVVAPARHGLETVLKVHDAGYLNFLETAWDRWK 79 (341)
T ss_dssp EECCGGGGGCCCSCEEETTEEECCSSCTHHHHHHHHHHHHTTCC---CEECCCCCCSTTGGGTSCHHHHHHHHHHHHHHH
T ss_pred EEECcHHhccCCcccccCCCcCCCCCChHHHHHHHHHHHhCCCC---ceeCCCCCCHHHHHHhCCHHHHHHHHHhhhhhh
Confidence 68999999998875 6999999999999999999985 688999999999999999999999998743211
Q ss_pred h-----------------------hhHhhhhccccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCC-cceeeecCCCCC
Q 013038 81 H-----------------------LFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQL-CDIAINWAGGLH 136 (451)
Q Consensus 81 ~-----------------------~~~~~~~~~~l~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~-~~~Ai~~~GG~H 136 (451)
. ....+...|+++.|||+|+++|++|++++|++|.|++++++|+ ..+|++|||| |
T Consensus 80 ~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~g~~~~d~dt~~~~~~~~aa~~aaG~~l~a~~~v~~g~~~afal~rppG-H 158 (341)
T 3q9b_A 80 AAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPG-H 158 (341)
T ss_dssp HTTCSSCBCCCBCCCTTCCCCCCSSHHHHHHHTBSBTTCCBCTTHHHHHHHHHHHHHHHHHHHHHTCSEEEECCSSCC-T
T ss_pred hcccccccccccccccccccccccchhcccceeccCCCCCcChhHHHHHHHHHHHHHHHHHHHHhCCCceEecCCCCC-C
Confidence 0 0011244678899999999999999999999999999999985 5688999999 9
Q ss_pred CccccCCCCccccchHHHHHHHHHHh-CCcEEEEEcccccCCCccccccccccchhhhcccccchhhhccCCCceEEEEe
Q 013038 137 HAKKCEASGFCYINDLVLGILELLKY-HARVLYIDIDVHHGDGVEEAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVS 215 (451)
Q Consensus 137 HA~~~~asGFC~vNdvaiai~~ll~~-~~RVl~IDiDvHHGDGtqe~F~~~~r~~~~~~~~~~~~~~~~~~~~~~VltiS 215 (451)
||++++++||||||||||||++|+++ .+||+|||||||||||||++||++++ |||+|
T Consensus 159 HA~~~~a~GFC~~NnvaiAa~~l~~~g~~RV~ivD~DvHHGnGtq~iF~~d~~----------------------Vl~~S 216 (341)
T 3q9b_A 159 HAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGD----------------------VFFAS 216 (341)
T ss_dssp TCBTTBBBTTBSSCHHHHHHHHHHHTTCSCEEEEECSSSCCHHHHHHHTTCTT----------------------EEEEE
T ss_pred CCCCCCCCCccccCHHHHHHHHHHHcCCCeEEEEecCCCCCcchhHHhcCCCC----------------------EEEEe
Confidence 99999999999999999999999998 59999999999999999999999999 99999
Q ss_pred eeccCCCCCCC-CCCCCccCCCCCcceEEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccc
Q 013038 216 FHKFGDLFFPG-TGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFN 294 (451)
Q Consensus 216 iH~~~~~ffPg-tG~~~~~G~g~G~~~~vNvPL~~g~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~n 294 (451)
||+++..|||+ ||..+++|.++|++|++|||||+|++|++|+.+|+.++ +++++|+||+||+|||||++.+||||.|+
T Consensus 217 ~H~~~~~~yP~~tG~~~e~G~g~g~g~~vNvpL~~g~~d~~y~~~~~~~l-~~l~~f~Pd~ivvsaG~D~~~~Dplg~~~ 295 (341)
T 3q9b_A 217 LHGDPAEAFPHFLGYAEETGKGAGAGTTANYPMGRGTPYSVWGEALTDSL-KRIAAFGAEAIVVSLGVDTFEQDPISFFK 295 (341)
T ss_dssp EEECGGGSTTCSSCCTTCCCCGGGTTCEEEEEECTTCBHHHHHHHHHHHH-HHHHHHTCSCEEEEECCTTBTTCTTCCCB
T ss_pred ccCCCccCCCCCCCcccccCCCCCCceeEeeecCCCCChHHHHHHHHHHH-HHHHhhCCCEEEEeCCccccCCCCCCCcc
Confidence 99997779999 99999999999999999999999999999999999976 57899999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCEEEEcCCCCCcchhhhHHHHHHhhhhc
Q 013038 295 LSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLD 340 (451)
Q Consensus 295 Ls~~g~~~~~~~l~~~~~p~l~lggGGY~~~~var~w~~~t~~llg 340 (451)
||.++|.+|++.++++++|+++++||||+++++++||..++..+.|
T Consensus 296 lt~~~~~~~~~~l~~~~~~~v~vleGGY~~~~l~~~~~~~l~g~~~ 341 (341)
T 3q9b_A 296 LTSPDYITMGRTIAASGVPLLVVMEGGYGVPEIGLNVANVLKGVAG 341 (341)
T ss_dssp BCTTHHHHHHHHHHTTSSCEEEEECCCCCCTTHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEECCCCChHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999998887653
No 8
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=1.5e-82 Score=646.60 Aligned_cols=306 Identities=24% Similarity=0.382 Sum_probs=282.9
Q ss_pred EEEEEcccccCCCCCC--------CCCCChHHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHHccCchHHHHHHHHhCCC
Q 013038 7 ISYFYDGDVGSVYFGP--------NHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPD 78 (451)
Q Consensus 7 v~~~~~~~~~~~~~~~--------~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~eL~~~Hs~~Yi~~l~~~~~~ 78 (451)
..++|||++..|..+. .|||+|.|+++++++|+++|| ++++|++|+.++|++||+++||++|++.++.
T Consensus 22 M~~~~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl----~~~~p~~At~e~L~~vHs~~YI~~l~~~~~~ 97 (362)
T 3men_A 22 MLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGF----PVREPDDFGIAPIAAVHDTHYLRFLETVHRE 97 (362)
T ss_dssp CEEECCGGGGGCCCCCEEETTEEECCCSCTHHHHHHHHHHHHTTC----CEECCCCCCSHHHHTTSCHHHHHHHHHHHHH
T ss_pred eEEEEChHHHhhCCccccccCCcCCCCCChHHHHHHHHHHHhCCC----eEeCCCCCCHHHHHHhCCHHHHHHHHHhhhh
Confidence 3589999999999875 799999999999999999997 7899999999999999999999999987532
Q ss_pred chh----------------------hhHhhhhccccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCC-cceeeecCCCC
Q 013038 79 TQH----------------------LFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQL-CDIAINWAGGL 135 (451)
Q Consensus 79 ~~~----------------------~~~~~~~~~~l~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~-~~~Ai~~~GG~ 135 (451)
... ....+...|.++.|||+++++|++|++++|++|.||+++++|+ ..+|++||||
T Consensus 98 ~~~~~~~~~~e~~p~~~p~~~~~p~~~~~~~g~~~~d~Dtpv~~~~~~aa~~aaG~~l~aa~~v~~g~~~afal~rPpG- 176 (362)
T 3men_A 98 WKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPG- 176 (362)
T ss_dssp HHTSCGGGCSSBCCCBCCCSSCCCCSHHHHHHHHBCBTTCCBCTTHHHHHHHHHHHHHHHHHHHHTTCSEEEECCSSCC-
T ss_pred hhhcccccccccccccccccccccccccccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC-
Confidence 110 0011223467889999999999999999999999999999985 5688899999
Q ss_pred CCccccCCCCccccchHHHHHHHHHHhCCcEEEEEcccccCCCccccccccccchhhhcccccchhhhccCCCceEEEEe
Q 013038 136 HHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVS 215 (451)
Q Consensus 136 HHA~~~~asGFC~vNdvaiai~~ll~~~~RVl~IDiDvHHGDGtqe~F~~~~r~~~~~~~~~~~~~~~~~~~~~~VltiS 215 (451)
|||++++++||||||||||||++|+++++||+|||||||||||||++||++++ |||+|
T Consensus 177 HHA~~~~a~GFC~fNnvAiAa~~l~~~~~RV~ivD~DvHHGnGtq~iF~~d~~----------------------Vl~~S 234 (362)
T 3men_A 177 HHARVDAAGGFCYLNNAAIAAQALRARHARVAVLDTDMHHGQGIQEIFYARRD----------------------VLYVS 234 (362)
T ss_dssp TTCBTTBBBTTBSSCHHHHHHHHHTTTCSCEEEEECSSSCCHHHHHHTTTCSS----------------------EEEEE
T ss_pred CCCCCCCCCCccccCHHHHHHHHHHHcCCeEEEEeCcCCCchhHhHHhcCCCC----------------------EEEEE
Confidence 99999999999999999999999999999999999999999999999999999 99999
Q ss_pred eeccCCCCCCC-CCCCCccCCCCCcceEEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccc
Q 013038 216 FHKFGDLFFPG-TGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFN 294 (451)
Q Consensus 216 iH~~~~~ffPg-tG~~~~~G~g~G~~~~vNvPL~~g~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~n 294 (451)
||+++..|||+ ||..+++|.++|++|++|||||+|++|++|+.+|+.++ +++++|+||+||+|||||++.+||||.|+
T Consensus 235 ~H~~~~~~yP~~tG~~~e~G~g~g~g~~vNvPL~~g~~d~~yl~~~~~~l-~~l~~f~PdlIvvsaG~Da~~~Dplg~l~ 313 (362)
T 3men_A 235 IHGDPTNFYPAVAGFDDERGAGEGLGYNVNLPMPHGSSEAAFFERVDDAL-RELRRFAPDALVLSLGFDVYRDDPQSQVA 313 (362)
T ss_dssp EEECCTTSTTCSSCCTTCCCSGGGTTSEEEEEECTTBCHHHHHHHHHHHH-HHHHHHCCSEEEEEECSTTBTTCTTCCBC
T ss_pred ecCCCccCCCCCCCccccccCCCCCceeEeeccCCCCChHHHHHHHHHHH-HHHHhcCCCEEEEECcccCcCCCCCCCcc
Confidence 99998789999 99999999999999999999999999999999999976 67899999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCEEEEcCCCCCcchhhhHHHHHHhhhhc
Q 013038 295 LSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLD 340 (451)
Q Consensus 295 Ls~~g~~~~~~~l~~~~~p~l~lggGGY~~~~var~w~~~t~~llg 340 (451)
||.++|.+|++.++++++|+++++||||+++++++|+..++..|.+
T Consensus 314 lt~~~~~~~~~~l~~~~~~~v~vleGGY~~~~l~~~~~a~l~~l~~ 359 (362)
T 3men_A 314 VTTDGFGRLGHLIGALRLPTVIVQEGGYHIESLEANARSFFGGFGA 359 (362)
T ss_dssp BCHHHHHHHHHHHHTTCCCEEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhhCCCEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988875
No 9
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=1.9e-81 Score=647.46 Aligned_cols=351 Identities=22% Similarity=0.348 Sum_probs=300.7
Q ss_pred CeEEEEEcccccCCC----CCCCCCCChHHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHHccCchHHHHHHHHhCCCch
Q 013038 5 DKISYFYDGDVGSVY----FGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQ 80 (451)
Q Consensus 5 ~~v~~~~~~~~~~~~----~~~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~eL~~~Hs~~Yi~~l~~~~~~~~ 80 (451)
.+++|+||++|..|. .++.|||+|.|+++++++|+++||++.+++++|++||.+||++||+++||+.+.. .+...
T Consensus 36 ~~t~~vyd~~~l~H~~~~~~~~~HPE~P~Rl~~i~~~L~~~Gl~~~~~~~~p~~At~eeL~~vHs~~YI~~~~~-~~l~~ 114 (421)
T 2pqp_A 36 FTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGT-NPLSR 114 (421)
T ss_dssp TCEEEECCGGGGGCCCTTCCTTSCSSCTHHHHHHHHHHHHTTCGGGSEEECCCCCCHHHHTTTSCHHHHHHHHC-CTTCS
T ss_pred CeEEEEECHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhcCCHHHHHhhhc-chhhh
Confidence 579999999999998 6789999999999999999999999999999999999999999999999986432 11110
Q ss_pred hh-----hHh----h----hhc--cccCCCCCCC-cchHHHHHHHHhHHHHHHHHHHcCCcc--eeeecCCCCCCccccC
Q 013038 81 HL-----FRQ----E----LTK--YNLGEDCPVF-ENLFEFCQIYAGGTIDAARRLNNQLCD--IAINWAGGLHHAKKCE 142 (451)
Q Consensus 81 ~~-----~~~----~----~~~--~~l~~D~p~f-~~l~~~~~~~aGgsl~aa~~l~~g~~~--~Ai~~~GG~HHA~~~~ 142 (451)
.+ ... . ... .+++.|++++ .++|+++++++|+++.|++++++|+++ +|++|||| |||++++
T Consensus 115 ~~~~~~~~~g~~~~~~~~~~p~gg~~~D~Dt~~~~~~s~~aa~~aaG~~~~a~~~v~~g~~~~afa~~rPpG-HHA~~~~ 193 (421)
T 2pqp_A 115 LKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPG-HHADHST 193 (421)
T ss_dssp CCCCHHHHHHHHSCCCCEECTTSCEESSSSCEECTTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCSSCC-TTCBTTB
T ss_pred hhhhcccccccchhhhhhhccccCcCCCCCcccCCccHHHHHHHHHhHHHHHHHHHHcCccccceeeCCCCC-CCCCCCC
Confidence 00 000 0 001 1244566665 388999999999999999999999876 66789998 9999999
Q ss_pred CCCccccchHHHHHHHHHHhC--CcEEEEEcccccCCCccccccccccchhhhcccccchhhhccCCCceEEEEeeeccC
Q 013038 143 ASGFCYINDLVLGILELLKYH--ARVLYIDIDVHHGDGVEEAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFG 220 (451)
Q Consensus 143 asGFC~vNdvaiai~~ll~~~--~RVl~IDiDvHHGDGtqe~F~~~~r~~~~~~~~~~~~~~~~~~~~~~VltiSiH~~~ 220 (451)
++|||+||||||||++|++++ +||+|||||||||||||++||++++ |||+|||+|+
T Consensus 194 a~GFC~fNnvAiAa~~l~~~~~~~RV~ivD~DvHHGnGtq~iF~~dp~----------------------Vl~~S~H~~~ 251 (421)
T 2pqp_A 194 AMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPS----------------------VLYISLHRHD 251 (421)
T ss_dssp CBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTT----------------------EEEEEEEECG
T ss_pred CCcchhhCHHHHHHHHHHHhcCCCeEEEEecCCCCChhHHHHhcCCCC----------------------EEEEecccCC
Confidence 999999999999999999864 8999999999999999999999999 9999999985
Q ss_pred -CCCCCCCCCCCccCCCCCcceEEeecCCCC----CChHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCC--CCCcc
Q 013038 221 -DLFFPGTGDVKEIGEREGKFYAINVPLKDG----IDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGD--RLGCF 293 (451)
Q Consensus 221 -~~ffPgtG~~~~~G~g~G~~~~vNvPL~~g----~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gD--plG~~ 293 (451)
..||||||..+++|.+.|+||++||||+.| ++|++|+.+|+.+|.|++++|+||+||+|||||++.+| |||++
T Consensus 252 ~g~~yPgtG~~~e~G~g~g~g~~vNvPl~~gl~~g~~d~~yl~~~~~~l~p~~~~F~PdlIvvsaG~Da~~gD~dpLg~~ 331 (421)
T 2pqp_A 252 DGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGY 331 (421)
T ss_dssp GGTSTTCCCCTTCCCCGGGTTCEEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCCGGGCCC
T ss_pred CCCCCCCCCChhhccCCCCccceeccccCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCcccccccccccCCc
Confidence 349999999999999999999999999754 78999999999999999999999999999999999998 99999
Q ss_pred ccCHHHHHHHHHHHHhc-CCCEEEEcCCCCCcchhhhHHHHHHhhhhcCCCCCCCCCchhhhhhcCCCCCCCCCCCCCCC
Q 013038 294 NLSIDGHAECVRFVKKF-NLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENL 372 (451)
Q Consensus 294 nLs~~g~~~~~~~l~~~-~~p~l~lggGGY~~~~var~w~~~t~~llg~~~~~~iP~~~~~~~~~p~~~l~~~~~~~~~~ 372 (451)
+||.++|+++++.++++ ++|+++++||||++.++++||..++.+|+|.+++ .+|+.. ....++.
T Consensus 332 ~lt~~~y~~~~~~l~~~a~grvv~vlEGGY~l~~l~~~~~a~~~~L~g~~~~-~l~~~~--------------~~~~p~~ 396 (421)
T 2pqp_A 332 HVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVD-PLSEEG--------------WKQKPNL 396 (421)
T ss_dssp BBCHHHHHHHHHHHTTSGGGCEEEEECSCCCHHHHHHHHHHHHHHHTTCCCC-GGGCGG--------------GGSCCCH
T ss_pred eeCHHHHHHHHHHHHHHcCCCEEEEECCCCChHHHHHHHHHHHHHHcCCCCC-CCcccc--------------cccccCH
Confidence 99999999999999987 8999999999999999999999999999997654 244211 1123455
Q ss_pred CcHHHHHHHHHHHHHhhhcCCC
Q 013038 373 NSKSYLSTIKMQVLENLRSIQH 394 (451)
Q Consensus 373 n~~~~l~~~~~~~~~~~~~~~~ 394 (451)
+..+.|+++++...+.|+.++.
T Consensus 397 ~a~~~i~~v~~~~~~yW~~l~~ 418 (421)
T 2pqp_A 397 NAIRSLEAVIRVHSKYWGCMQR 418 (421)
T ss_dssp HHHHHHHHHHHHHTTTCGGGCC
T ss_pred HHHHHHHHHHHHHHHHhHHHHh
Confidence 6677778777766666665553
No 10
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=74.75 E-value=2.6 Score=37.91 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=40.2
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeeCC-CCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEE
Q 013038 242 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVT 317 (451)
Q Consensus 242 ~vNvPL~~g~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~-D~~~gDplG~~nLs~~g~~~~~~~l~~~~~p~l~l 317 (451)
.+|..+.. .+-...+..|.. .+-.++|++||+.+|. |...+-+.....-..+.+..+++.+++-+.+++++
T Consensus 53 viN~Gi~G-~tt~~~l~r~~~----~v~~~~Pd~vvi~~G~ND~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~iil~ 124 (209)
T 4hf7_A 53 YIGRGISG-QTSYQFLLRFRE----DVINLSPALVVINAGTNDVAENTGAYNEDYTFGNIASMAELAKANKIKVILT 124 (209)
T ss_dssp EEEEECTT-CCHHHHHHHHHH----HTGGGCCSEEEECCCHHHHTTSSSSCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEeccCc-ccHHHHHHHHHH----HHHhcCCCEEEEEeCCCcCccccccccHHHHHHHHHHhhHHHhccCceEEEE
Confidence 36665533 333444444443 3345899999999997 44333222222223345566777777767766654
No 11
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=59.37 E-value=10 Score=32.52 Aligned_cols=65 Identities=18% Similarity=0.307 Sum_probs=37.7
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeeCCC-CCCCCCCCccccCHHH----HHHHHHHHHhcCCCEEE
Q 013038 242 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGAD-SLAGDRLGCFNLSIDG----HAECVRFVKKFNLPLLV 316 (451)
Q Consensus 242 ~vNvPL~~g~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D-~~~gDplG~~nLs~~g----~~~~~~~l~~~~~p~l~ 316 (451)
.+|.... |.+-.+.+..+. ..+..++||+||++.|.. ... ..+.+. +.++++.+++.+.++++
T Consensus 41 v~n~g~~-G~~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~~-------~~~~~~~~~~~~~~i~~~~~~~~~vvl 108 (185)
T 3hp4_A 41 LINASIS-GETSGGALRRLD----ALLEQYEPTHVLIELGANDGLR-------GFPVKKMQTNLTALVKKSQAANAMTAL 108 (185)
T ss_dssp EEECCCT-TCCHHHHHHHHH----HHHHHHCCSEEEEECCHHHHHT-------TCCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEECCcC-CccHHHHHHHHH----HHHhhcCCCEEEEEeecccCCC-------CcCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 3444443 334444554444 345568999999999963 222 234444 44566777777766666
Q ss_pred Ec
Q 013038 317 TG 318 (451)
Q Consensus 317 lg 318 (451)
+.
T Consensus 109 ~~ 110 (185)
T 3hp4_A 109 ME 110 (185)
T ss_dssp EC
T ss_pred Ee
Confidence 53
No 12
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=58.79 E-value=27 Score=30.37 Aligned_cols=59 Identities=12% Similarity=0.290 Sum_probs=37.8
Q ss_pred eEEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHH----HHHHHHHhcC
Q 013038 241 YAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHA----ECVRFVKKFN 311 (451)
Q Consensus 241 ~~vNvPL~~g~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~----~~~~~l~~~~ 311 (451)
...|.....+.+....+..+.. .+...+||+||+.+|.. | +..+.+.|. .+++.+++.+
T Consensus 47 ~v~~~~~~~~~~~~~~~~~~~~----~~~~~~pd~Vvi~~G~N----D----~~~~~~~~~~~l~~ii~~l~~~~ 109 (200)
T 4h08_A 47 YVGRLSNSKSVGDPALIEELAV----VLKNTKFDVIHFNNGLH----G----FDYTEEEYDKSFPKLIKIIRKYA 109 (200)
T ss_dssp EEEEEEESCCTTCHHHHHHHHH----HHHHSCCSEEEECCCSS----C----TTSCHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEeccCCccHHHHHHHHHH----HHhcCCCCeEEEEeeeC----C----CCCCHHHHHHHHHHHHHHHhhhC
Confidence 4556666666666666655544 45568999999999975 3 234555544 4666666654
No 13
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=57.16 E-value=30 Score=29.81 Aligned_cols=65 Identities=12% Similarity=0.139 Sum_probs=37.3
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHH----HHHHHHHHHhcCCCEEEE
Q 013038 242 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDG----HAECVRFVKKFNLPLLVT 317 (451)
Q Consensus 242 ~vNvPL~~g~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g----~~~~~~~l~~~~~p~l~l 317 (451)
.+|..+. |.+-...+..+. ..+..++||+|||+.|..=.. . ..+.+. +..+++.+++.+.+++++
T Consensus 37 v~n~g~~-G~~~~~~~~~~~----~~~~~~~pd~Vii~~G~ND~~----~--~~~~~~~~~~l~~li~~~~~~~~~vil~ 105 (190)
T 1ivn_A 37 VVNASIS-GDTSQQGLARLP----ALLKQHQPRWVLVELGGNDGL----R--GFQPQQTEQTLRQILQDVKAANAEPLLM 105 (190)
T ss_dssp EEECCCT-TCCHHHHHHHHH----HHHHHHCCSEEEEECCTTTTS----S--SCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEecCCC-CchHHHHHHHHH----HHHHhcCCCEEEEEeeccccc----c--CCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3454443 223334444443 445567999999999974332 1 244444 445666777767666655
No 14
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=56.46 E-value=7.5 Score=31.62 Aligned_cols=57 Identities=12% Similarity=0.160 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccC-----HHHHHHHHHHHHhcCCCEEEE
Q 013038 261 KTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLS-----IDGHAECVRFVKKFNLPLLVT 317 (451)
Q Consensus 261 ~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs-----~~g~~~~~~~l~~~~~p~l~l 317 (451)
+++|..++.+|+-++=|++++.|...+.++|.+-+. .....+...++++.++.+=++
T Consensus 34 ~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~vEvl 95 (98)
T 3ced_A 34 EPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVL 95 (98)
T ss_dssp HHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred chHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 578889999999999999999999999999998763 345667888888888765454
No 15
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=47.19 E-value=14 Score=32.08 Aligned_cols=69 Identities=12% Similarity=0.230 Sum_probs=38.0
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHH----HHHHHHHHhcCCCEEEE
Q 013038 242 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGH----AECVRFVKKFNLPLLVT 317 (451)
Q Consensus 242 ~vNvPL~~g~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~----~~~~~~l~~~~~p~l~l 317 (451)
.+|..+.. .+-..++..+. ..+..++||+||+..|..=.... ....+.+.| ..+++.+++-+.+++++
T Consensus 49 v~n~g~~G-~~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~vil~ 120 (204)
T 3p94_A 49 FVDRGISG-QTTSEMLVRFR----QDVINLKPKAVVILAGINDIAHN---NGVIALENVFGNLVSMAELAKANHIKVIFC 120 (204)
T ss_dssp EEEEECTT-CCHHHHHHHHH----HHTGGGCEEEEEEECCHHHHTTT---TSCCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred eEEcccCc-ccHHHHHHHHH----HHHHhCCCCEEEEEeecCccccc---cCCCCHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 35665533 33344444333 33456899999999997432221 111445444 44666677666666665
Q ss_pred c
Q 013038 318 G 318 (451)
Q Consensus 318 g 318 (451)
.
T Consensus 121 ~ 121 (204)
T 3p94_A 121 S 121 (204)
T ss_dssp C
T ss_pred e
Confidence 3
No 16
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=46.00 E-value=46 Score=29.36 Aligned_cols=70 Identities=11% Similarity=0.237 Sum_probs=39.9
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHh-cCCCEEEEeeCCCCCCCCCCCccccCHHHHH----HHHHHHHhcCCCEEE
Q 013038 242 AINVPLKDGIDDTSFTRLFKTIISKVVET-YAPGAIVLQCGADSLAGDRLGCFNLSIDGHA----ECVRFVKKFNLPLLV 316 (451)
Q Consensus 242 ~vNvPL~~g~~D~~y~~~f~~ii~~~~~~-f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~----~~~~~l~~~~~p~l~ 316 (451)
.+|..+. |.+-...+..+.. ++.. .+||+|||..|..=.... +....+.+.|. .+++.+++.+.++++
T Consensus 46 v~n~g~~-G~~~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~~~vil 118 (240)
T 3mil_A 46 ILQRGFK-GYTSRWALKILPE----ILKHESNIVMATIFLGANDACSA--GPQSVPLPEFIDNIRQMVSLMKSYHIRPII 118 (240)
T ss_dssp EEEEECT-TCCHHHHHHHHHH----HHHHCCCEEEEEEECCTTTTSSS--STTCCCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEecCcC-cccHHHHHHHHHH----HhcccCCCCEEEEEeecCcCCcc--CCCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 4555553 3344555555544 3333 699999999998322211 12234555444 466677777766666
Q ss_pred Ec
Q 013038 317 TG 318 (451)
Q Consensus 317 lg 318 (451)
+.
T Consensus 119 ~~ 120 (240)
T 3mil_A 119 IG 120 (240)
T ss_dssp EC
T ss_pred Ec
Confidence 54
No 17
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=45.54 E-value=22 Score=36.28 Aligned_cols=70 Identities=16% Similarity=0.268 Sum_probs=44.5
Q ss_pred ecCCCCCCh-HHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 013038 245 VPLKDGIDD-TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY 322 (451)
Q Consensus 245 vPL~~g~~D-~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~~~l~~~~~p~l~lggGGY 322 (451)
|||-..+.. .++...|++.+ |-+.+|+-..||+-.|--++..+- .....+-+..+++.+.++++|-|||-
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~-~yi~~~~~~~iViK~GG~~l~~~~-------~~~~~~~i~~l~~~g~~vvlVhggg~ 85 (456)
T 3d2m_A 15 VPRGSHMNAPDSFVAHFREAA-PYIRQMRGTTLVAGIDGRLLEGGT-------LNKLAADIGLLSQLGIRLVLIHGAYH 85 (456)
T ss_dssp ----------CCHHHHHHHHH-HHHHHHTTCEEEEEECGGGGTSTH-------HHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred CcCcccCCchhHHHHHHHHhH-HHHHHhcCCEEEEEEChHHhcCch-------HHHHHHHHHHHHHCCCeEEEEeCCcH
Confidence 344333443 56889999875 778999999999999988876421 33444444555666777777777774
No 18
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=45.23 E-value=27 Score=32.39 Aligned_cols=48 Identities=13% Similarity=0.072 Sum_probs=27.6
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeeCC-CCCCCCCCCc
Q 013038 242 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGC 292 (451)
Q Consensus 242 ~vNvPL~~g~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~-D~~~gDplG~ 292 (451)
.+|..+... +-.+.+..+..++.. ...+||+|+|..|. |...+.+++.
T Consensus 61 v~N~G~~G~-tt~~~~~~~~~~l~~--~~~~pd~V~I~~G~ND~~~~~~~~~ 109 (274)
T 3bzw_A 61 PFVYGISGR-QWDDVPRQAEKLKKE--HGGEVDAILVFMGTNDYNSSVPIGE 109 (274)
T ss_dssp EEECCCTTC-CGGGHHHHHHHHHHH--HTTTCCEEEEECCHHHHHTTCCCCC
T ss_pred EEEeecCCC-CHHHHHHHHHHHHhc--cCCCCCEEEEEEecccCcccCCCcc
Confidence 355555332 333355555553321 23789999999998 5555555554
No 19
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=42.69 E-value=1.3e+02 Score=30.03 Aligned_cols=52 Identities=12% Similarity=0.207 Sum_probs=32.6
Q ss_pred HHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHHHHHHhc--CCCEEEEc
Q 013038 265 SKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVTG 318 (451)
Q Consensus 265 ~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~~~l~~~--~~p~l~lg 318 (451)
..++...+||+|||.+|..=...+ + ...--.+.+..+++.+++. +.|++++.
T Consensus 237 ~~~l~~~~pdlVvI~lGtND~~~~-~-~~~~~~~~l~~li~~ir~~~P~a~Illv~ 290 (385)
T 3skv_A 237 ARLIRDLPADLISLRVGTSNFMDG-D-GFVDFPANLVGFVQIIRERHPLTPIVLGS 290 (385)
T ss_dssp HHHHHHSCCSEEEEEESHHHHTTT-C-CTTTHHHHHHHHHHHHHTTCSSSCEEEEE
T ss_pred HHHHhccCCCEEEEEeeccCCCCC-C-CHHHHHHHHHHHHHHHHHHCCCCcEEEEc
Confidence 344566799999999997433221 1 1112235566788888876 56777665
No 20
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=42.05 E-value=23 Score=31.37 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHHHHHHhc--CCCEEEE
Q 013038 251 IDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVT 317 (451)
Q Consensus 251 ~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~~~l~~~--~~p~l~l 317 (451)
.+-.+.+..+.. .+...+||+|||+.|..=.. .....+.+.+..+++.+++. +.+++++
T Consensus 66 ~~~~~~~~~l~~----~l~~~~pd~vvi~~G~ND~~----~~~~~~~~~l~~li~~i~~~~p~~~ii~~ 126 (215)
T 2vpt_A 66 WTIPQIASNINN----WLNTHNPDVVFLWIGGNDLL----LNGNLNATGLSNLIDQIFTVKPNVTLFVA 126 (215)
T ss_dssp CCHHHHHHHHHH----HHHHHCCSEEEEECCHHHHH----HHCCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred hhHHHHHHHHHH----HhhccCCCEEEEEccccccC----CCCChhHHHHHHHHHHHHHhCCCCEEEEE
Confidence 344455554443 34467999999999974221 12234568888899998887 4555554
No 21
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=41.93 E-value=46 Score=28.90 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=31.5
Q ss_pred HHHHHhcCC-CEEEEeeCCCCCCCCCCCccccCHHHH----HHHHHHHHhcC---------CCEEEEc
Q 013038 265 SKVVETYAP-GAIVLQCGADSLAGDRLGCFNLSIDGH----AECVRFVKKFN---------LPLLVTG 318 (451)
Q Consensus 265 ~~~~~~f~P-d~Ivvq~G~D~~~gDplG~~nLs~~g~----~~~~~~l~~~~---------~p~l~lg 318 (451)
...+..++| |+|||+.|.. |-...++.+.+.+ ..+++.+++.+ .+++++.
T Consensus 75 ~~~l~~~~p~d~vvi~~G~N----D~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~P~~~iil~~ 138 (216)
T 2q0q_A 75 PSCLATHLPLDLVIIMLGTN----DTKAYFRRTPLDIALGMSVLVTQVLTSAGGVGTTYPAPKVLVVS 138 (216)
T ss_dssp HHHHHHHCSCSEEEEECCTG----GGSGGGCCCHHHHHHHHHHHHHHHHTCTTTTTBCCCCCEEEEEE
T ss_pred HHHHHhCCCCCEEEEEecCc----ccchhcCCCHHHHHHHHHHHHHHHHHhcccccccCCCCeEEEEe
Confidence 344566788 9999999974 2222234566544 45666777766 5666663
No 22
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=41.60 E-value=75 Score=27.78 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEcC
Q 013038 260 FKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGG 319 (451)
Q Consensus 260 f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~~~l~~~~~p~l~lgg 319 (451)
++.++.. +.+.+||+||+ +| |.. ....+.+.+.++.+.+++.+.|+++|.|
T Consensus 21 ~~~~~~~-~~~~~~D~vi~-~G-Dl~------~~~~~~~~~~~~~~~l~~~~~pv~~v~G 71 (228)
T 1uf3_A 21 LEKFVKL-APDTGADAIAL-IG-NLM------PKAAKSRDYAAFFRILSEAHLPTAYVPG 71 (228)
T ss_dssp HHHHHTH-HHHHTCSEEEE-ES-CSS------CTTCCHHHHHHHHHHHGGGCSCEEEECC
T ss_pred HHHHHHH-HhhcCCCEEEE-CC-CCC------CCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 4444433 34458997654 44 322 1122456666788888888889887765
No 23
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=41.51 E-value=56 Score=31.42 Aligned_cols=59 Identities=19% Similarity=0.319 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHHHHHHhcC--CCEEEEcC
Q 013038 254 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFN--LPLLVTGG 319 (451)
Q Consensus 254 ~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~~~l~~~~--~p~l~lgg 319 (451)
++...+|+.++.. +.+.+||+||+ +| |- =.-.-..+......+.++++.+. .|++++.|
T Consensus 44 ~~~~~~l~~lv~~-~~~~~~D~vli-aG-D~----l~d~~~~~~~~~~~~~~~l~~L~~~~pv~~i~G 104 (336)
T 2q8u_A 44 EELKKALDKVVEE-AEKREVDLILL-TG-DL----LHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPG 104 (336)
T ss_dssp HHHHHHHHHHHHH-HHHHTCSEEEE-ES-CS----BSCSSCCCHHHHHHHHHHHHHHHHHSCEEECCC
T ss_pred HHHHHHHHHHHHH-HHHhCCCEEEE-CC-cc----ccCCCCCCHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 4566778877754 56679997766 44 30 22222334444444555555443 88877765
No 24
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=40.54 E-value=35 Score=28.89 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=36.3
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHH----HHHHHHhcCCCEEEE
Q 013038 242 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAE----CVRFVKKFNLPLLVT 317 (451)
Q Consensus 242 ~vNvPL~~g~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~----~~~~l~~~~~p~l~l 317 (451)
.+|.... |.+-.+++..+. ..+...+||+||++.|..=.. .....+.+.|.. +++.++ +.+++++
T Consensus 42 v~n~g~~-G~~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~----~~~~~~~~~~~~~l~~~i~~~~--~~~vi~~ 110 (195)
T 1yzf_A 42 VINAGMP-GDTTEDGLKRLN----KEVLIEKPDEVVIFFGANDAS----LDRNITVATFRENLETMIHEIG--SEKVILI 110 (195)
T ss_dssp EEEEECT-TCCHHHHHHHHH----HHTGGGCCSEEEEECCTTTTC----TTSCCCHHHHHHHHHHHHHHHC--GGGEEEE
T ss_pred EEeCCCC-CCCHHHHHHHHH----HhhhhcCCCEEEEEeeccccC----ccCCCCHHHHHHHHHHHHHHhc--CCEEEEE
Confidence 3455543 334444444443 344568999999999974333 122456665554 334443 5566655
Q ss_pred c
Q 013038 318 G 318 (451)
Q Consensus 318 g 318 (451)
.
T Consensus 111 ~ 111 (195)
T 1yzf_A 111 T 111 (195)
T ss_dssp C
T ss_pred c
Confidence 4
No 25
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=40.35 E-value=61 Score=32.04 Aligned_cols=58 Identities=19% Similarity=0.334 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHHHHHHhc---CCCEEEEcC
Q 013038 254 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF---NLPLLVTGG 319 (451)
Q Consensus 254 ~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~~~l~~~---~~p~l~lgg 319 (451)
.+....|+.++.. +.+-+||+||+ || |=....+-+...+..+.+.++.+ ++|++++.|
T Consensus 43 ~~~~~~l~~~v~~-~~~~~~D~Vli-aG------Dl~d~~~p~~~~~~~~~~~l~~L~~~~~pv~~v~G 103 (386)
T 3av0_A 43 KDIYDSFKLCIKK-ILEIKPDVVLH-SG------DLFNDLRPPVKALRIAMQAFKKLHENNIKVYIVAG 103 (386)
T ss_dssp HHHHHHHHHHHHH-HHTTCCSEEEE-CS------CSBSSSSCCHHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred HHHHHHHHHHHHH-HHHcCCCEEEE-CC------CCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 3456778777754 45679998876 33 43222234455555555555554 788887765
No 26
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=38.97 E-value=22 Score=31.87 Aligned_cols=43 Identities=21% Similarity=0.376 Sum_probs=27.7
Q ss_pred HHhcCCCEEEEeeCCCCCCCCCCCccccCHH----HHHHHHHHHHhc--CCCEEEEc
Q 013038 268 VETYAPGAIVLQCGADSLAGDRLGCFNLSID----GHAECVRFVKKF--NLPLLVTG 318 (451)
Q Consensus 268 ~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~----g~~~~~~~l~~~--~~p~l~lg 318 (451)
+..++||+|||..|..=.. .+.+ .+..+++.+++. +.+++++.
T Consensus 89 l~~~~pd~vvi~~G~ND~~--------~~~~~~~~~l~~~i~~l~~~~p~~~ii~~~ 137 (232)
T 1es9_A 89 LEHIRPKIVVVWVGTNNHG--------HTAEQVTGGIKAIVQLVNERQPQARVVVLG 137 (232)
T ss_dssp TTTCCCSEEEEECCTTCTT--------SCHHHHHHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred cccCCCCEEEEEeecCCCC--------CCHHHHHHHHHHHHHHHHHHCCCCeEEEec
Confidence 4567999999999984332 3444 444566667665 45566654
No 27
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=37.88 E-value=1.1e+02 Score=29.45 Aligned_cols=58 Identities=17% Similarity=0.316 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHH---HHHHhcCCCEEEEcC
Q 013038 254 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECV---RFVKKFNLPLLVTGG 319 (451)
Q Consensus 254 ~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~---~~l~~~~~p~l~lgg 319 (451)
+++...|+.++. .+.+.+||+||+ +| |=.-..+-+.+....+. +.++..+.|++++.|
T Consensus 23 ~~~~~~~~~~~~-~~~~~~~D~vl~-~G------Dl~d~~~~~~~~~~~~~~~l~~l~~~~~~v~~v~G 83 (333)
T 1ii7_A 23 EEFAEAFKNALE-IAVQENVDFILI-AG------DLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEG 83 (333)
T ss_dssp HHHHHHHHHHHH-HHHHTTCSEEEE-ES------CSBSSSSCCHHHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred HHHHHHHHHHHH-HHHhcCCCEEEE-CC------CcCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEeCC
Confidence 456677777775 456789998766 44 32222223444444444 444455789887765
No 28
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=37.47 E-value=4.9 Score=32.64 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCH----HHHHHHHHHHHhcCCCEEEE
Q 013038 262 TIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSI----DGHAECVRFVKKFNLPLLVT 317 (451)
Q Consensus 262 ~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~----~g~~~~~~~l~~~~~p~l~l 317 (451)
++|..++.+|+-++=|++++.|...+.++|.+-+.. ........++++.+..+=++
T Consensus 38 pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (100)
T 2qsw_A 38 PIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI 97 (100)
T ss_dssp CHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred hHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCEEEEc
Confidence 478889999999999999999999999999886643 44667788888887755443
No 29
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=35.79 E-value=9.5 Score=33.21 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=29.9
Q ss_pred HHHHhcCCCEEEEeeCCC-CCCCCCCC---ccccCHHHHH----HHHHHHHhcCCCEEEEc
Q 013038 266 KVVETYAPGAIVLQCGAD-SLAGDRLG---CFNLSIDGHA----ECVRFVKKFNLPLLVTG 318 (451)
Q Consensus 266 ~~~~~f~Pd~Ivvq~G~D-~~~gDplG---~~nLs~~g~~----~~~~~l~~~~~p~l~lg 318 (451)
..+...+||+|||+.|.. ...+.+.+ ....+.+.|. ++++.+++.+.+++++.
T Consensus 77 ~~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vil~~ 137 (216)
T 3rjt_A 77 DDVMALQPDYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRDTLRHLVATTKPRVREMFLLS 137 (216)
T ss_dssp HHTGGGCCSEEEEECCHHHHHHHHHSTTCGGGCCCHHHHHHHHHHHHHHHGGGSSEEEEEC
T ss_pred hHHhhcCCCEEEEEeeccccchhhccccccccCCCHHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence 344567999999999962 22111100 1134455544 45566666666666663
No 30
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=34.78 E-value=83 Score=30.24 Aligned_cols=63 Identities=16% Similarity=0.379 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEcCCCCC
Q 013038 254 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYT 323 (451)
Q Consensus 254 ~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~~~l~~~~~p~l~lggGGY~ 323 (451)
.++...|.+.+ |-+.+|+-..||+-.|-.++..+. ......+-+..+++.+.++++|-|||-.
T Consensus 8 ~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vVlVhGgG~~ 70 (300)
T 2buf_A 8 AQVAKVLSEAL-PYIRRFVGKTLVIKYGGNAMESEE------LKAGFARDVVLMKAVGINPVVVHGGGPQ 70 (300)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCEEEEEECCTTTTSSH------HHHHHHHHHHHHHHTTCEEEEEECCCHH
T ss_pred HHHHHHHHHHh-HHHHHhcCCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCeEEEEECCcHH
Confidence 46788898876 678889989999999988887531 1122333344555667788888888743
No 31
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=33.74 E-value=56 Score=29.23 Aligned_cols=42 Identities=12% Similarity=0.230 Sum_probs=27.0
Q ss_pred HHHHHhcCC-CEEEEeeCCCCCCCCCCCccccCHHHHH----HHHHHHHhc
Q 013038 265 SKVVETYAP-GAIVLQCGADSLAGDRLGCFNLSIDGHA----ECVRFVKKF 310 (451)
Q Consensus 265 ~~~~~~f~P-d~Ivvq~G~D~~~gDplG~~nLs~~g~~----~~~~~l~~~ 310 (451)
...+..++| |+|||..|.. |-......+.+.|. ++++.+++.
T Consensus 93 ~~~l~~~~p~d~VvI~~GtN----D~~~~~~~~~~~~~~~l~~li~~ir~~ 139 (232)
T 3dci_A 93 EVALSCHMPLDLVIIMLGTN----DIKPVHGGRAEAAVSGMRRLAQIVETF 139 (232)
T ss_dssp HHHHHHHCSCSEEEEECCTT----TTSGGGTSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhCCCCCEEEEEeccC----CCccccCCCHHHHHHHHHHHHHHHHHh
Confidence 345567899 9999999964 43333344665554 466667764
No 32
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=33.66 E-value=67 Score=33.63 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEeeC-CCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEcCCCCCcc
Q 013038 259 LFKTIISKVVETYAPGAIVLQCG-ADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKE 325 (451)
Q Consensus 259 ~f~~ii~~~~~~f~Pd~Ivvq~G-~D~~~gDplG~~nLs~~g~~~~~~~l~~~~~p~l~lggGGY~~~ 325 (451)
.++..|..+.+.|+|++|+|... .-..-||.+.. +++.++. +.||+.+--.||...
T Consensus 72 kL~~aI~~~~~~~~P~~I~V~tTC~~elIGdDi~~----------v~~~~~~-~~pVi~v~tpgf~g~ 128 (525)
T 3aek_B 72 LLKDALAAAHARYKPQAMAVALTCTAELLQDDPNG----------ISRALNL-PVPVVPLELPSYSRK 128 (525)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEECTTGGGSCCCHHH----------HHHHHTC-SSCEEECCCCTTTCC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHHhcccHHH----------HHHHhcC-CCCEEEEECCCcCCc
Confidence 44556677888899997766655 66777776542 4444444 788888888888864
No 33
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=31.74 E-value=40 Score=29.66 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=36.7
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHHHh---cCCCEEEEeeCCCCCCCCCCCccccCHHHH----HHHHHHHHhcCCCEE
Q 013038 243 INVPLKDGIDDTSFTRLFKTIISKVVET---YAPGAIVLQCGADSLAGDRLGCFNLSIDGH----AECVRFVKKFNLPLL 315 (451)
Q Consensus 243 vNvPL~~g~~D~~y~~~f~~ii~~~~~~---f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~----~~~~~~l~~~~~p~l 315 (451)
+|..+. |.+-.+.+..+.. .++.. .+||+|||+.|..=... ..+....+.+.| ..+++.+++. .+++
T Consensus 60 ~n~g~~-G~t~~~~~~~~~~---~~~~~~~~~~pd~vvi~~G~ND~~~-~~~~~~~~~~~~~~~l~~li~~l~~~-~~ii 133 (218)
T 1vjg_A 60 YNLGIR-RDTSSDIAKRWLQ---EVSLRLHKEYNSLVVFSFGLNDTTL-ENGKPRVSIAETIKNTREILTQAKKL-YPVL 133 (218)
T ss_dssp EEEECT-TCCHHHHHHHHHH---HHHTTCCTTSEEEEEEECCHHHHCE-ETTEESSCHHHHHHHHHHHHHHHHHH-SCEE
T ss_pred EeCCCC-CcCHHHHHHHhHH---hhhhhhccCCCCEEEEEecCCcchh-hcccccCCHHHHHHHHHHHHHHHHHh-CcEE
Confidence 555553 3344444444433 23333 59999999999732110 000123455444 4456666666 6777
Q ss_pred EEc
Q 013038 316 VTG 318 (451)
Q Consensus 316 ~lg 318 (451)
++.
T Consensus 134 l~~ 136 (218)
T 1vjg_A 134 MIS 136 (218)
T ss_dssp EEC
T ss_pred EEC
Confidence 664
No 34
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=31.50 E-value=45 Score=32.05 Aligned_cols=66 Identities=14% Similarity=0.283 Sum_probs=44.3
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEcCCCCC
Q 013038 251 IDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYT 323 (451)
Q Consensus 251 ~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~~~l~~~~~p~l~lggGGY~ 323 (451)
++..++...|.+.+ |-+.+|+-..||+-.|--++.... ..+.+.+-+..+++.+.++++|-|||-.
T Consensus 4 ~~~~~~~~~~~~a~-pyi~~~~~k~iViKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vViVhGgG~~ 69 (299)
T 2ap9_A 4 LPTHIKAQVLAEAL-PWLKQLHGKVVVVKYGGNAMTDDT------LRRAFAADMAFLRNCGIHPVVVHGGGPQ 69 (299)
T ss_dssp SCHHHHHHHHHHHH-HHHHHHTTCEEEEEECTHHHHSHH------HHHHHHHHHHHHHTTTCEEEEEECCSHH
T ss_pred CChhhHHHHHHHHH-HHHHHhCCCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCcEEEEECCcHH
Confidence 45678889999876 678999999999999977665321 1122333344455557777777777654
No 35
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=30.62 E-value=51 Score=31.40 Aligned_cols=33 Identities=9% Similarity=0.196 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCC
Q 013038 255 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAG 287 (451)
Q Consensus 255 ~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~g 287 (451)
.+...+...|..++++++|++||.-.|.|.|..
T Consensus 131 ~~~~~l~~~l~~~ir~~~PdvV~t~~~~d~HpD 163 (273)
T 3dff_A 131 DLVGEVADDIRSIIDEFDPTLVVTCAAIGEHPD 163 (273)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHH
T ss_pred chHHHHHHHHHHHHHHcCCCEEEECCCCCCChH
Confidence 345566667778999999999999888776654
No 36
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=30.53 E-value=23 Score=28.55 Aligned_cols=56 Identities=14% Similarity=0.353 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCH----HHHHHHHHHHHhcCCCEEEE
Q 013038 262 TIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSI----DGHAECVRFVKKFNLPLLVT 317 (451)
Q Consensus 262 ~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~----~g~~~~~~~l~~~~~p~l~l 317 (451)
++|..++.+|+-++=|++++.|...+.++|.+-+.. ....+...++++.+..+=++
T Consensus 38 pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (101)
T 2qrr_A 38 PLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEVL 97 (101)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence 578899999999999999999999999999886643 44567788888887755444
No 37
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=28.89 E-value=60 Score=30.81 Aligned_cols=33 Identities=6% Similarity=0.139 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCC
Q 013038 255 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAG 287 (451)
Q Consensus 255 ~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~g 287 (451)
.+...+...|..++++++|++||.-.|.|.|..
T Consensus 128 ~~~~~~~~~l~~~ir~~~PdvV~t~~~~d~HpD 160 (270)
T 3dfi_A 128 DLVAAIREDIESMIAECDPTLVLTCVAIGKHPD 160 (270)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHH
T ss_pred chHHHHHHHHHHHHHHcCCCEEEeCCCCCCChh
Confidence 344556667778999999999999888776654
No 38
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=28.69 E-value=46 Score=33.04 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=39.8
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCC-CEEEEeeCCCCCCCCCCCccccCHHH----HHHHHHHHHhcCCCEEE
Q 013038 242 AINVPLKDGIDDTSFTRLFKTIISKVVETYAP-GAIVLQCGADSLAGDRLGCFNLSIDG----HAECVRFVKKFNLPLLV 316 (451)
Q Consensus 242 ~vNvPL~~g~~D~~y~~~f~~ii~~~~~~f~P-d~Ivvq~G~D~~~gDplG~~nLs~~g----~~~~~~~l~~~~~p~l~ 316 (451)
.+|.-+. |.+-.+++.- ..+.+++..++| |+|||+.|..=.. .....+.+. +..+++.+++.+.++++
T Consensus 202 v~N~Gis-G~tt~~~l~~--~rl~~~l~~~~p~d~VvI~~G~ND~~----~~~~~~~~~~~~~l~~ii~~lr~~~a~vil 274 (375)
T 2o14_A 202 VRNMASG-GQIARGFRND--GQLEAILKYIKPGDYFMLQLGINDTN----PKHKESEAEFKEVMRDMIRQVKAKGADVIL 274 (375)
T ss_dssp EEECCCT-TCCHHHHHHS--SHHHHHHTTCCTTCEEEEECCTGGGC----GGGCCCHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred EEEeccC-CCcHhhhhhc--ccHHHHHHhCCCCCEEEEEEEccCCC----ccCCCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 5676664 3343444420 123456678899 9999999973222 122335544 44566677776666665
Q ss_pred E
Q 013038 317 T 317 (451)
Q Consensus 317 l 317 (451)
+
T Consensus 275 v 275 (375)
T 2o14_A 275 S 275 (375)
T ss_dssp E
T ss_pred E
Confidence 5
No 39
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=28.14 E-value=32 Score=28.08 Aligned_cols=54 Identities=7% Similarity=0.243 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccC----HHHHHHHHHHHHhcCCCEE
Q 013038 262 TIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLS----IDGHAECVRFVKKFNLPLL 315 (451)
Q Consensus 262 ~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs----~~g~~~~~~~l~~~~~p~l 315 (451)
++|..++.+|+-++=|++++.|...+.++|.+-+. .....+...++++.++.+=
T Consensus 36 PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vE 93 (106)
T 3dhx_A 36 PLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVE 93 (106)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEE
Confidence 47889999999999999999999999999987554 3456677888888776543
No 40
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=27.56 E-value=46 Score=29.73 Aligned_cols=19 Identities=26% Similarity=0.266 Sum_probs=15.0
Q ss_pred HHHhCCcEEEEEcccccCC
Q 013038 159 LLKYHARVLYIDIDVHHGD 177 (451)
Q Consensus 159 ll~~~~RVl~IDiDvHHGD 177 (451)
|.+...||++||.|..+|+
T Consensus 27 la~~g~~VlliD~D~~~~~ 45 (237)
T 1g3q_A 27 LGDRGRKVLAVDGDLTMAN 45 (237)
T ss_dssp HHHTTCCEEEEECCTTSCC
T ss_pred HHhcCCeEEEEeCCCCCCC
Confidence 3345689999999998775
No 41
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=27.35 E-value=1.2e+02 Score=29.82 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCC-CccccCHHHHHHHHHH---HHhcCCCEEEEcC
Q 013038 253 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRL-GCFNLSIDGHAECVRF---VKKFNLPLLVTGG 319 (451)
Q Consensus 253 D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDpl-G~~nLs~~g~~~~~~~---l~~~~~p~l~lgg 319 (451)
.+++..+|+.++ .++.+.+||+||+ + ||-. -.-+.+...+..+.+. +... +|++++.|
T Consensus 25 ~~~~~~~l~~l~-~~~~~~~~D~vli-a------GDl~hd~~~~~~~~~~~~~~~l~~l~~~-~~v~~i~G 86 (379)
T 3tho_B 25 REELKKALDKVV-EEAEKREVDLILL-T------GDLLHSRNNPSVVALHDLLDYLKRMMRT-APVVVLPG 86 (379)
T ss_dssp HHHHHHHHHHHH-HHHHHHTCSEEEE-C------SCCBSCSSSCCHHHHHHHHHHHHHHHHH-SCEEECCC
T ss_pred hHHHHHHHHHHH-HHHHhcCCCEEEE-C------CCccccCCCCCHHHHHHHHHHHHHHHhC-CCEEEEcC
Confidence 355677777766 4567789999888 3 4543 2334455555444444 4444 88887765
No 42
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=27.01 E-value=2.6e+02 Score=27.43 Aligned_cols=63 Identities=11% Similarity=0.184 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhcC--CCEEEEeeCCCCCCCCCCCccccCH----HHHHHHHHHHHhcCC-CEEEEcCCCCCc
Q 013038 255 SFTRLFKTIISKVVETYA--PGAIVLQCGADSLAGDRLGCFNLSI----DGHAECVRFVKKFNL-PLLVTGGGGYTK 324 (451)
Q Consensus 255 ~y~~~f~~ii~~~~~~f~--Pd~Ivvq~G~D~~~gDplG~~nLs~----~g~~~~~~~l~~~~~-p~l~lggGGY~~ 324 (451)
.+...+...+..++++|+ |+.|++..+ ..|.+. .+. +.+.++++.+++.+. .+|+|++-+|+.
T Consensus 117 ~~~~~~~~~w~~iA~ryk~~~~~Vi~el~-----NEP~~~--~~~~~w~~~~~~~i~~IR~~dp~~~Iiv~g~~w~~ 186 (345)
T 3jug_A 117 SDLDRAVDYWIEMKDALIGKEDTVIINIA-----NEWYGS--WDGAAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQ 186 (345)
T ss_dssp HHHHHHHHHHHHTHHHHTTCTTTEEEECC-----TTCCCS--SCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEEec-----CCCCCC--CCHHHHHHHHHHHHHHHHhhCCCCEEEEeCCCccc
Confidence 356666667777888885 456666655 667663 333 344567788888754 466677767774
No 43
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=25.89 E-value=2.1e+02 Score=26.71 Aligned_cols=65 Identities=12% Similarity=0.220 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHhcC--CCEEEEeeCCCCCCCCCCCccccC--HHHHHHHHHHHHhcCC-CEEEEcCCCCCc
Q 013038 255 SFTRLFKTIISKVVETYA--PGAIVLQCGADSLAGDRLGCFNLS--IDGHAECVRFVKKFNL-PLLVTGGGGYTK 324 (451)
Q Consensus 255 ~y~~~f~~ii~~~~~~f~--Pd~Ivvq~G~D~~~gDplG~~nLs--~~g~~~~~~~l~~~~~-p~l~lggGGY~~ 324 (451)
.....+...+..++++|+ |+.|++..+ ..|.+.+.-+ .+.|.+++..+|+.+. .+|++++.+|+.
T Consensus 94 ~~~~~~~~~w~~ia~~y~~~~~~v~~el~-----NEP~~~~~~~~~~~~~~~~~~~IR~~d~~~~i~v~~~~~~~ 163 (294)
T 2whl_A 94 SDLNRAVDYWIEMKDALIGKEDTVIINIA-----NEWYGSWDGSAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQ 163 (294)
T ss_dssp HHHHHHHHHHHHTHHHHTTCTTTEEEECC-----TTCCCSSCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTTTT
T ss_pred hhHHHHHHHHHHHHHHHcCCCCeEEEEec-----CCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCC
Confidence 445566666677788886 455555444 6676642111 3556678888888744 455666556654
No 44
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=25.72 E-value=52 Score=29.79 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=15.2
Q ss_pred HHHhCCcEEEEEcccccCC
Q 013038 159 LLKYHARVLYIDIDVHHGD 177 (451)
Q Consensus 159 ll~~~~RVl~IDiDvHHGD 177 (451)
|.+...||++||.|..+|+
T Consensus 27 la~~g~~VlliD~D~~~~~ 45 (260)
T 3q9l_A 27 LAQKGKKTVVIDFAIGLRN 45 (260)
T ss_dssp HHHTTCCEEEEECCCSSCC
T ss_pred HHhCCCcEEEEECCCCCCC
Confidence 3355789999999997776
No 45
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=24.28 E-value=78 Score=28.17 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=35.3
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHH----HHHHHHHHHhc--CCCEEE
Q 013038 243 INVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDG----HAECVRFVKKF--NLPLLV 316 (451)
Q Consensus 243 vNvPL~~g~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g----~~~~~~~l~~~--~~p~l~ 316 (451)
+|..+. |.+-.+++..+.. .++..++||+|||..|..=. | .+.+. +..+++.+++. +.++++
T Consensus 69 ~n~g~~-G~t~~~~~~~~~~---~~l~~~~pd~vvi~~G~ND~-----~---~~~~~~~~~l~~~i~~l~~~~p~~~iil 136 (229)
T 1fxw_F 69 LNFGIG-GDTTRHVLWRLKN---GELENIKPKVIVVWVGTNNH-----E---NTAEEVAGGIEAIVQLINTRQPQAKIIV 136 (229)
T ss_dssp EEEECT-TCCHHHHHHHHHT---TTTSSCCCSEEEEECCTTCT-----T---SCHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred eeeccC-cchHHHHHHHHHc---CccccCCCCEEEEEEecCCC-----C---CCHHHHHHHHHHHHHHHHHHCCCCeEEE
Confidence 454443 3333444443332 12456899999999997543 2 45544 44566666665 455665
Q ss_pred E
Q 013038 317 T 317 (451)
Q Consensus 317 l 317 (451)
+
T Consensus 137 ~ 137 (229)
T 1fxw_F 137 L 137 (229)
T ss_dssp E
T ss_pred E
Confidence 4
No 46
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=24.16 E-value=70 Score=28.12 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=15.4
Q ss_pred HHHHHHHhcCCCEEEEeeC
Q 013038 263 IISKVVETYAPGAIVLQCG 281 (451)
Q Consensus 263 ii~~~~~~f~Pd~Ivvq~G 281 (451)
.|..++.+.+||+|.+|=-
T Consensus 35 ~i~~~i~~~~pDIi~LQEv 53 (256)
T 4fva_A 35 AVAHIVKNVNPDILFLQEV 53 (256)
T ss_dssp HHHHHHHHHCCSEEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEec
Confidence 4556788899999999964
No 47
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=23.89 E-value=59 Score=29.63 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=14.6
Q ss_pred HHhCCcEEEEEcccccCC
Q 013038 160 LKYHARVLYIDIDVHHGD 177 (451)
Q Consensus 160 l~~~~RVl~IDiDvHHGD 177 (451)
.+...||++||.|...|+
T Consensus 28 a~~g~~VlliD~D~~~~~ 45 (263)
T 1hyq_A 28 AQLGHDVTIVDADITMAN 45 (263)
T ss_dssp HHTTCCEEEEECCCSSSS
T ss_pred HhCCCcEEEEECCCCCCC
Confidence 345689999999998775
No 48
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=23.73 E-value=4e+02 Score=23.88 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=35.3
Q ss_pred HHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEcCCCCCcchhhhHHHHHHhhhhcC
Q 013038 268 VETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDT 341 (451)
Q Consensus 268 ~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~~~l~~~~~p~l~lggGGY~~~~var~w~~~t~~llg~ 341 (451)
+-+.+||+||.+.... . ....+.|++.++|++++-. ..+...+ +-+...++.++|+
T Consensus 55 i~~l~PDlIi~~~~~~------------~----~~~~~~L~~~gipvv~~~~-~~~~~~~-~~~i~~lg~~~g~ 110 (255)
T 3md9_A 55 ILAMKPTMLLVSELAQ------------P----SLVLTQIASSGVNVVTVPG-QTTPESV-AMKINAVATALHQ 110 (255)
T ss_dssp HHTTCCSEEEEETTCS------------C----HHHHHHHHHTTCEEEEECC-CCSHHHH-HHHHHHHHHHHTC
T ss_pred HHccCCCEEEEcCCcC------------c----hhHHHHHHHcCCcEEEeCC-CCCHHHH-HHHHHHHHHHhCC
Confidence 4568999999875421 0 2456778888999998753 2343333 2345556667773
No 49
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=23.11 E-value=90 Score=32.41 Aligned_cols=56 Identities=20% Similarity=0.155 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCCEEEEeeCC-CCCCCCCCCccccCHHHHHHHHHHHH-hcCCCEEEEcCCCCCcch
Q 013038 261 KTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKEN 326 (451)
Q Consensus 261 ~~ii~~~~~~f~Pd~Ivvq~G~-D~~~gDplG~~nLs~~g~~~~~~~l~-~~~~p~l~lggGGY~~~~ 326 (451)
...|..+.+.|+|++|+|...+ -..-||.+.. +.+.++ ..++|++.+--.||....
T Consensus 77 ~~~I~~~~~~~~P~~I~V~tTC~~e~IGdDi~~----------v~~~~~~~~g~pVi~v~tpgf~g~~ 134 (511)
T 2xdq_B 77 VDNIIRKDTEEHPDLIVLTPTCTSSILQEDLQN----------FVRRASLSTTADVLLADVNHYRVNE 134 (511)
T ss_dssp HHHHHHHHHHHCCSEEEEECCHHHHTTCCCHHH----------HHHHHHHHCSSEEEECCCCTTTCCH
T ss_pred HHHHHHHHHhcCCCEEEEeCCcHHHHhccCHHH----------HHHHhhhccCCCEEEeeCCCcccch
Confidence 3455567788999998887765 6677776543 444443 458999999999998643
No 50
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=22.96 E-value=2e+02 Score=29.36 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHHHHHH
Q 013038 254 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVK 308 (451)
Q Consensus 254 ~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~~~l~ 308 (451)
.+....|+.++. .+.+.+||+||+ +| |=.-...-+.+....+.+.++
T Consensus 54 ~d~~~~l~~ll~-~~~~~~~D~Vli-aG------Dlfd~~~~~~~~~~~~~~~L~ 100 (431)
T 3t1i_A 54 NDTFVTLDEILR-LAQENEVDFILL-GG------DLFHENKPSRKTLHTCLELLR 100 (431)
T ss_dssp THHHHHHHHHHH-HHHHTTCSEEEE-CS------CCBSSSSCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH-HHhhcCCCEEEE-cC------ccccCCCCCHHHHHHHHHHHH
Confidence 355667777665 456689999998 33 433333456666666666665
No 51
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=22.44 E-value=1.9e+02 Score=23.08 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCEEEEeeCC-CCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEE
Q 013038 263 IISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVT 317 (451)
Q Consensus 263 ii~~~~~~f~Pd~Ivvq~G~-D~~~gDplG~~nLs~~g~~~~~~~l~~~~~p~l~l 317 (451)
.|...+++.+.|+||+.+-- ..+..--+|. -.-+.++....|++++
T Consensus 90 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs---------~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 90 AILQAARAEKADLIVMGTRGLGALGSLFLGS---------QSQRVVAEAPCPVLLV 136 (137)
T ss_dssp HHHHHHHHTTCSEEEEESSCTTCCSCSSSCH---------HHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHcCCCEEEECCCCCchhhhhhhcc---------HHHHHHhcCCCCEEEe
Confidence 34466778889999886542 2222212332 3344556678888876
No 52
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=21.95 E-value=50 Score=29.62 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=16.4
Q ss_pred HHHh-CCcEEEEEcccccCCCcc
Q 013038 159 LLKY-HARVLYIDIDVHHGDGVE 180 (451)
Q Consensus 159 ll~~-~~RVl~IDiDvHHGDGtq 180 (451)
|.+. .+||++||+|...|+=+.
T Consensus 29 la~~~g~~VlliD~D~~~~~l~~ 51 (245)
T 3ea0_A 29 LSQEPDIHVLAVDISLPFGDLDM 51 (245)
T ss_dssp HTTSTTCCEEEEECCTTTCCGGG
T ss_pred HHhCcCCCEEEEECCCCCCCHHH
Confidence 3344 789999999998776443
No 53
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=21.57 E-value=48 Score=31.87 Aligned_cols=63 Identities=11% Similarity=0.225 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 013038 253 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY 322 (451)
Q Consensus 253 D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~~~l~~~~~p~l~lggGGY 322 (451)
+..+...|++.+ |-+.+|+-..||+-.|--++.... ..+.+.+-+..+++.+.++++|-|||-
T Consensus 17 ~~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vViVhGgG~ 79 (298)
T 2rd5_A 17 PDYRVEILSESL-PFIQKFRGKTIVVKYGGAAMTSPE------LKSSVVSDLVLLACVGLRPILVHGGGP 79 (298)
T ss_dssp -CHHHHHHHHTH-HHHHHTTTCEEEEEECTHHHHCHH------HHHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred hHHHHHHHHHHH-HHHHHhcCCEEEEEECchhhCChh------HHHHHHHHHHHHHHCCCCEEEEECCcH
Confidence 357888999876 678999999999999976665310 012233333445555777777777764
No 54
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=21.35 E-value=1.7e+02 Score=23.39 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=24.4
Q ss_pred HHHHHHhcCCCEEEEeeCC-CCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEE
Q 013038 264 ISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVT 317 (451)
Q Consensus 264 i~~~~~~f~Pd~Ivvq~G~-D~~~gDplG~~nLs~~g~~~~~~~l~~~~~p~l~l 317 (451)
|...+++.+.|+||+.+-- .....=-+|. -.-+.++..+.|+++|
T Consensus 102 I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs---------~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 102 IVRFARKRECDLVVIGAQGTNGDKSLLLGS---------VAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HHHHHHHTTCSEEEECSSCTTCCSCCCCCH---------HHHHHHHHCSSCEEEC
T ss_pred HHHHHHHhCCCEEEEeCCCCccccceeecc---------HHHHHHhhCCCCEEEC
Confidence 4456677788888876432 2222112332 2344556667787764
No 55
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=21.12 E-value=1e+02 Score=31.33 Aligned_cols=70 Identities=11% Similarity=0.160 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCCCEEEEeeC-CCCCCCCCCCccccCHHHHHHHHHHHH-hcCCCEEEEcCCCCCcchhhhHHHHHHhh
Q 013038 260 FKTIISKVVETYAPGAIVLQCG-ADSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKENVARCWTVETGI 337 (451)
Q Consensus 260 f~~ii~~~~~~f~Pd~Ivvq~G-~D~~~gDplG~~nLs~~g~~~~~~~l~-~~~~p~l~lggGGY~~~~var~w~~~t~~ 337 (451)
++..|..+.+.|+|++|+|... .-..-||.+. .+.+.++ ..++|++.+--.||... ....|......
T Consensus 85 L~~~i~~~~~~~~P~~I~v~~TC~~~iIGdDi~----------~v~~~~~~~~~ipVi~v~~~Gf~~~-~~~G~~~a~~a 153 (460)
T 2xdq_A 85 LKRLCLEIKRDRNPSVIVWIGTCTTEIIKMDLE----------GLAPKLEAEIGIPIVVARANGLDYA-FTQGEDTVLAA 153 (460)
T ss_dssp HHHHHHHHHHHHCCSEEEEEECHHHHHTTCCHH----------HHHHHHHHHHSSCEEEEECCTTTCC-TTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCHHHHHhhCHH----------HHHHHHhhccCCcEEEEecCCcccc-HHHHHHHHHHH
Confidence 4667778889999998777554 3445555433 3444443 45899999999999863 44555555555
Q ss_pred hhc
Q 013038 338 LLD 340 (451)
Q Consensus 338 llg 340 (451)
++.
T Consensus 154 l~~ 156 (460)
T 2xdq_A 154 MAA 156 (460)
T ss_dssp HHT
T ss_pred HHH
Confidence 443
No 56
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=21.03 E-value=91 Score=26.72 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=14.5
Q ss_pred HHHHHHHhcCCCEEEEee
Q 013038 263 IISKVVETYAPGAIVLQC 280 (451)
Q Consensus 263 ii~~~~~~f~Pd~Ivvq~ 280 (451)
.|..++.+.+||+|.+|=
T Consensus 25 ~i~~~i~~~~pDIi~LQE 42 (250)
T 4f1h_A 25 GLCSYLALYTPDVVFLQE 42 (250)
T ss_dssp HHHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEe
Confidence 345677889999999995
No 57
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*
Probab=20.86 E-value=1.5e+02 Score=30.04 Aligned_cols=67 Identities=16% Similarity=0.119 Sum_probs=54.1
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHH----HHHHHHHHHHhcCCCEEE
Q 013038 250 GIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSID----GHAECVRFVKKFNLPLLV 316 (451)
Q Consensus 250 g~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~----g~~~~~~~l~~~~~p~l~ 316 (451)
.++.+.++...+.++..=+.....+.|+|-.|......|.+|.+....+ |...+++.+++.+.++-+
T Consensus 25 ~~~e~~i~~~ad~~~~~gl~~~G~~~~~iDdgW~~~~~d~~G~~~~~~~kFP~Gl~~l~~~i~~~Glk~Gi 95 (417)
T 1szn_A 25 DIDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRVDGHIAPNATRFPDGIDGLAKKVHALGLKLGI 95 (417)
T ss_dssp CCCHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCTTCCBTTBCCBCTTTCTTHHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHHHHHHHcCchhhCCCEEEECCCccCCCCCCCCCEEECcccCCcCHHHHHHHHHHcCCEEEE
Confidence 4678888887777666555778899999999999888888998877655 889999999999887543
No 58
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=20.71 E-value=55 Score=29.04 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=30.7
Q ss_pred cCCCEEEEeeCC-CCCCCCCCCcccc-C----HHHHHHHHHHHHhc--CCCEEEEc
Q 013038 271 YAPGAIVLQCGA-DSLAGDRLGCFNL-S----IDGHAECVRFVKKF--NLPLLVTG 318 (451)
Q Consensus 271 f~Pd~Ivvq~G~-D~~~gDplG~~nL-s----~~g~~~~~~~l~~~--~~p~l~lg 318 (451)
.+||+|||+.|. |...+-+++.+.- + ...+..+++.+++. +.+++++.
T Consensus 81 ~~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~f~~~l~~li~~l~~~~P~~~iil~~ 136 (232)
T 3dc7_A 81 EDADFIAVFGGVNDYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFIS 136 (232)
T ss_dssp TTCSEEEEECCHHHHHTTCCCCCTTCCSTTSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCCEEEEEEeccccccCcCCccccccchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 489999999997 4444445554321 1 12566677878776 67777653
No 59
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=20.64 E-value=65 Score=28.68 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeeCCC
Q 013038 258 RLFKTIISKVVETYAPGAIVLQCGAD 283 (451)
Q Consensus 258 ~~f~~ii~~~~~~f~Pd~Ivvq~G~D 283 (451)
..++.++..+ ..-+.|+||+-|+.-
T Consensus 118 ~~l~~~l~~l-~~~~yD~viiD~pp~ 142 (254)
T 3kjh_A 118 SFLGSVVSAL-FLDKKEAVVMDMGAG 142 (254)
T ss_dssp HHHHHHHHHH-HHTCCSEEEEEECTT
T ss_pred HHHHHHHHHh-ccCCCCEEEEeCCCc
Confidence 3455666555 234679999998753
No 60
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=20.53 E-value=1.9e+02 Score=28.62 Aligned_cols=50 Identities=20% Similarity=0.393 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEcCCC
Q 013038 254 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGG 321 (451)
Q Consensus 254 ~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~~~l~~~~~p~l~lggGG 321 (451)
+..-.++. -+.+++.+++||+|++.- |+...+- ...++..++|++ ..++|
T Consensus 77 ~~~~~~~~-~l~~~l~~~kPD~Vlv~g-------d~~~~~a---------alaA~~~~IPv~-h~eag 126 (385)
T 4hwg_A 77 KSIGLVIE-KVDEVLEKEKPDAVLFYG-------DTNSCLS---------AIAAKRRKIPIF-HMEAG 126 (385)
T ss_dssp HHHHHHHH-HHHHHHHHHCCSEEEEES-------CSGGGGG---------HHHHHHTTCCEE-EESCC
T ss_pred HHHHHHHH-HHHHHHHhcCCcEEEEEC-------CchHHHH---------HHHHHHhCCCEE-EEeCC
Confidence 33334443 466889999999999873 3322211 223345689975 45555
No 61
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=20.33 E-value=1.6e+02 Score=26.37 Aligned_cols=47 Identities=13% Similarity=0.254 Sum_probs=30.1
Q ss_pred HHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHHHHHHhcCC---CEEEEcCCCCC
Q 013038 266 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNL---PLLVTGGGGYT 323 (451)
Q Consensus 266 ~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~~~l~~~~~---p~l~lggGGY~ 323 (451)
..+.+.+|++|.+|+-... +.....+.++.+++.+. ..+++||.+.+
T Consensus 133 ~~~~~~~~d~v~lS~~~~~-----------~~~~~~~~i~~l~~~~~~~~~~v~vGG~~~~ 182 (210)
T 1y80_A 133 EAVKKYQPDIVGMSALLTT-----------TMMNMKSTIDALIAAGLRDRVKVIVGGAPLS 182 (210)
T ss_dssp HHHHHHCCSEEEEECCSGG-----------GTHHHHHHHHHHHHTTCGGGCEEEEESTTCC
T ss_pred HHHHHcCCCEEEEeccccc-----------cHHHHHHHHHHHHhcCCCCCCeEEEECCCCC
Confidence 4567789999999985321 34456678888887643 23445555544
No 62
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=20.05 E-value=96 Score=27.13 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=14.4
Q ss_pred HHHHHHHhcCCCEEEEee
Q 013038 263 IISKVVETYAPGAIVLQC 280 (451)
Q Consensus 263 ii~~~~~~f~Pd~Ivvq~ 280 (451)
.|..++.+.+||+|.+|=
T Consensus 31 ~i~~~i~~~~pDIi~LQE 48 (256)
T 4gz1_A 31 GVCSCLALYSPDVVFLQE 48 (256)
T ss_dssp HHHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEc
Confidence 344677889999999995
No 63
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=20.01 E-value=2.1e+02 Score=22.75 Aligned_cols=45 Identities=11% Similarity=0.245 Sum_probs=25.1
Q ss_pred HHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEE
Q 013038 264 ISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVT 317 (451)
Q Consensus 264 i~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~~~l~~~~~p~l~l 317 (451)
|...+++.+.|+||+..-- + .+..+-+.. -.-+.++....|+++|
T Consensus 98 I~~~a~~~~~dliV~G~~~-~----~~~~~~~Gs----~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 98 ILALAKSLPADLVIIASHR-P----DITTYLLGS----NAAAVVRHAECSVLVV 142 (143)
T ss_dssp HHHHHHHTTCSEEEEESSC-T----TCCSCSSCH----HHHHHHHHCSSEEEEE
T ss_pred HHHHHHHhCCCEEEEeCCC-C----CCeeeeecc----HHHHHHHhCCCCEEEe
Confidence 4456777888888887752 1 122221110 2334556667888775
Done!