RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013038
(451 letters)
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 364
Score = 294 bits (753), Expect = 4e-97
Identities = 144/384 (37%), Positives = 224/384 (58%), Gaps = 25/384 (6%)
Query: 9 YFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADY 68
Y Y + S + P R M H L+ +Y LHK+M I +P A E+A FH+ Y
Sbjct: 5 YIYSPEYVS--MCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAY 62
Query: 69 VEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIA 128
++ L +++ + + +Y LG DCP E +F++ G TI AA+ L + +C +A
Sbjct: 63 LQHLQKVSQEGDDDHP-DSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVA 121
Query: 129 INWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDR 188
INW+GG HHAKK EASGFCY+ND VLGIL L + R+LY+D+D+HHGDGVE+AF FT +
Sbjct: 122 INWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSK 181
Query: 189 LLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLK 248
++ HKF FFPGTGDV ++G +G++Y++NVP++
Sbjct: 182 VMTVS----------------------LHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQ 219
Query: 249 DGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVK 308
DGI D + ++ ++++ +V + + P A+VLQ GAD++AGD + FN++ G +C++++
Sbjct: 220 DGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYIL 279
Query: 309 KFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGH 368
++ L L+ GGGGY N ARCWT TG++L L +EIP++E+ + P+ L I
Sbjct: 280 QWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSC 339
Query: 369 IENLNSKSYLSTIKMQVLENLRSI 392
+ N + I + NL+ +
Sbjct: 340 RPDRNEPHRIQQILNYIKGNLKHV 363
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
63363]}
Length = 372
Score = 239 bits (610), Expect = 1e-75
Identities = 110/392 (28%), Positives = 165/392 (42%), Gaps = 28/392 (7%)
Query: 6 KISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHS 65
K+ D G + NHP+K R+ + + +L + E+ + A EL FH+
Sbjct: 2 KVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHT 61
Query: 66 ADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLC 125
DY+ L G + PV +F + G T+ A
Sbjct: 62 EDYINTLMEAERCQCVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNV 121
Query: 126 DIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHAR-VLYIDIDVHHGDGVEEAFY 184
N AGG+HHA K A+GFCYIN+ +GI L K + +LYID+D HH DGV+EAFY
Sbjct: 122 AF--NPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQEAFY 179
Query: 185 FTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAIN 244
TD++ + +Y F G ++EIGE +GK Y +N
Sbjct: 180 DTDQVFVLSLHQSPEYA---------------------FPFEKGFLEEIGEGKGKGYNLN 218
Query: 245 VPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECV 304
+PL G++D F + + V E + P +LQ G D L D L FNLS +
Sbjct: 219 IPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAF 278
Query: 305 RFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPEN--EYIKYFAPEC-- 360
V++ + GGGGY +AR WT+ L E+P ++ E +K E
Sbjct: 279 NIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGREVPEKLNNKAKELLKSIDFEEFD 338
Query: 361 SLRIPNGHIENLNSKSYLSTIKMQVLENLRSI 392
+ +E L ++ +V + L
Sbjct: 339 DEVDRSYMLETLKDPWRGGEVRKEVKDTLEKA 370
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 171 bits (434), Expect = 1e-49
Identities = 75/399 (18%), Positives = 136/399 (34%), Gaps = 63/399 (15%)
Query: 21 GPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLH-----RI 75
HP R+ + L + E R KA EL HS +V R+
Sbjct: 24 NSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRL 83
Query: 76 TPDTQHLFRQELTKYNLGEDC--------PVFENL--FEFCQIYAGGTIDAARRLNNQLC 125
D L + + C ++ L + AG D A ++ ++
Sbjct: 84 KLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASREL 143
Query: 126 DIAINWAGGL-HHAKKCEASGFCYINDLVLGILELLKYH--ARVLYIDIDVHHGDGVEEA 182
HHA A GFC+ N + + +L + +++L +D DVHHG+G ++
Sbjct: 144 KNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQT 203
Query: 183 FYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLF-FPGTGDVKEIGEREGKFY 241
FY +L H+ D FPG+G V E+G G+ +
Sbjct: 204 FYQDPSVLYIS----------------------LHRHDDGNFFPGSGAVDEVGAGSGEGF 241
Query: 242 AINVPLKD----GIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGD--RLGCFNL 295
+NV + D + F+ ++ + ++P +++ G D+ G LG +++
Sbjct: 242 NVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHV 301
Query: 296 SIDGHAECVRFVKKF-NLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIK 354
S + + +++ GG+ + LL + P +E
Sbjct: 302 SAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVD---PLSEEGW 358
Query: 355 YFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQ 393
P NLN+ L + + +Q
Sbjct: 359 KQKP------------NLNAIRSLEAVIRVHSKYWGCMQ 385
>d2cc1a1 e.3.1.1 (A:27-293) beta-Lactamase, class A {Mycobacterium
fortuitum [TaxId: 1766]}
Length = 262
Score = 26.8 bits (58), Expect = 5.9
Identities = 13/87 (14%), Positives = 23/87 (26%), Gaps = 6/87 (6%)
Query: 184 YFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAI 243
L R N T + K G + T D +G+ +
Sbjct: 175 PQRGLLEDWMRANQTSSMRAGLPEGWTTA----DKTGSGDYGSTNDAGIAFGPDGQRLLL 230
Query: 244 NVPLKDGIDDTSFTRLFKTI--ISKVV 268
+ + D L I ++ +V
Sbjct: 231 VMMTRSQAHDPKAENLRPLIGELTALV 257
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 26.7 bits (57), Expect = 6.5
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 297 IDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDT 341
+ GH + V +F +V+G +N + W+ TG L T
Sbjct: 12 LKGHDDHVITCLQFCGNRIVSGS----DDNTLKVWSAVTGKCLRT 52
>d2h3ka1 b.1.28.1 (A:1-144) Iron-regulated surface determinant
protein H, IsdH {Staphylococcus aureus [TaxId: 1280]}
Length = 144
Score = 25.8 bits (56), Expect = 7.6
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 45 KKMEIYRPHKAYPVELAQFHSA--DYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENL 102
KK E+Y ++ PV L + D+ ++ TQ L T+ + GE+
Sbjct: 72 KKFEVYENNQKLPVRLVSYSPVPEDHAYIRFPVSDGTQELKIVSSTQIDDGEETNYDYTK 131
Query: 103 FEFCQ 107
F +
Sbjct: 132 LVFAK 136
>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 225
Score = 26.1 bits (56), Expect = 9.2
Identities = 15/141 (10%), Positives = 44/141 (31%), Gaps = 7/141 (4%)
Query: 315 LVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRI-------PNG 367
L++G + + + + + K+F+ E + + +
Sbjct: 41 LLSGNVIPVVYALKIFLGINGPVFGENGGIMFDNDGSIKKFFSNEGTNKFLEEMSKRTSM 100
Query: 368 HIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDQHT 427
N ST E++ ++ + + Y ++ +++
Sbjct: 101 RSILTNRWREASTGFDIDPEDVDYVRKEAESRGFVIFYSGYSWHLMNRGEDKAFAVNKLK 160
Query: 428 QDKQIQRDDEFYEGDNDNDHM 448
+ ++ D+ GD++ND
Sbjct: 161 EMYSLEYDEILVIGDSNNDMP 181
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.141 0.437
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,816,451
Number of extensions: 89781
Number of successful extensions: 279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 16
Length of query: 451
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 363
Effective length of database: 1,199,356
Effective search space: 435366228
Effective search space used: 435366228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.3 bits)