Query 013039
Match_columns 451
No_of_seqs 130 out of 1193
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 23:47:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 4.1E-55 8.9E-60 417.4 35.0 389 37-440 44-449 (449)
2 PTZ00206 amino acid transporte 100.0 1.6E-55 3.4E-60 441.1 31.3 395 38-441 58-465 (467)
3 KOG1303 Amino acid transporter 100.0 3.2E-53 7E-58 412.1 34.7 409 24-443 22-437 (437)
4 PF01490 Aa_trans: Transmembra 100.0 3.6E-53 7.8E-58 422.4 -0.8 393 38-437 1-408 (409)
5 PLN03074 auxin influx permease 100.0 3E-48 6.5E-53 386.5 31.5 392 37-451 43-462 (473)
6 KOG1305 Amino acid transporter 100.0 2.7E-44 5.8E-49 348.2 25.6 393 37-443 3-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 1.9E-42 4.1E-47 311.2 9.1 398 34-449 111-523 (524)
8 COG0814 SdaC Amino acid permea 100.0 5.4E-34 1.2E-38 280.3 34.2 391 35-436 4-411 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 100.0 3.4E-27 7.4E-32 230.7 32.3 372 38-429 1-391 (394)
10 PRK10483 tryptophan permease; 100.0 2.8E-26 6E-31 221.9 30.9 375 35-431 6-401 (414)
11 PRK09664 tryptophan permease T 100.0 5.3E-26 1.1E-30 219.7 30.3 376 37-433 6-404 (415)
12 TIGR00837 araaP aromatic amino 100.0 2.6E-26 5.7E-31 226.4 25.8 344 46-409 3-360 (381)
13 PRK15132 tyrosine transporter 100.0 1.5E-25 3.2E-30 218.0 30.5 369 41-432 4-391 (403)
14 PRK13629 threonine/serine tran 99.9 1.5E-23 3.3E-28 202.6 30.2 385 44-434 23-440 (443)
15 TIGR00814 stp serine transport 99.9 1.5E-22 3.3E-27 197.5 25.0 357 43-407 6-378 (397)
16 PRK10655 potE putrescine trans 99.8 1E-17 2.2E-22 168.4 34.2 353 36-409 4-377 (438)
17 PRK10435 cadB lysine/cadaverin 99.8 1.6E-17 3.5E-22 166.5 31.1 355 35-409 2-380 (435)
18 PRK10644 arginine:agmatin anti 99.8 5.5E-17 1.2E-21 163.2 34.9 354 35-409 5-379 (445)
19 TIGR00905 2A0302 transporter, 99.8 2.3E-16 5.1E-21 159.8 34.8 357 36-409 5-385 (473)
20 TIGR00906 2A0303 cationic amin 99.8 1.2E-16 2.7E-21 163.9 32.3 359 35-408 25-411 (557)
21 PRK15049 L-asparagine permease 99.8 1.1E-16 2.4E-21 162.6 31.5 353 36-408 26-406 (499)
22 PRK10249 phenylalanine transpo 99.8 1.8E-16 3.8E-21 159.9 31.9 351 35-407 18-394 (458)
23 PRK11387 S-methylmethionine tr 99.8 1.3E-16 2.8E-21 161.6 30.9 353 35-408 11-392 (471)
24 KOG1287 Amino acid transporter 99.8 2.1E-17 4.6E-22 160.2 23.8 361 34-413 8-391 (479)
25 COG1113 AnsP Gamma-aminobutyra 99.8 4.5E-17 9.8E-22 155.4 25.2 352 35-407 10-388 (462)
26 TIGR00909 2A0306 amino acid tr 99.8 1.7E-16 3.6E-21 159.3 30.2 351 37-407 2-375 (429)
27 PRK11021 putative transporter; 99.8 1.9E-15 4.2E-20 150.5 36.3 345 40-409 1-363 (410)
28 TIGR03810 arg_ornith_anti argi 99.8 7.4E-16 1.6E-20 155.9 33.2 355 38-409 1-381 (468)
29 PRK11049 D-alanine/D-serine/gl 99.8 8.4E-16 1.8E-20 155.5 31.8 354 35-408 17-399 (469)
30 PRK10746 putative transport pr 99.8 1.3E-15 2.8E-20 153.5 33.0 353 36-409 8-389 (461)
31 TIGR01773 GABAperm gamma-amino 99.8 7.6E-16 1.7E-20 155.4 31.2 352 35-408 9-388 (452)
32 TIGR00911 2A0308 L-type amino 99.8 1E-15 2.2E-20 156.4 30.3 358 34-408 38-415 (501)
33 PRK10238 aromatic amino acid t 99.8 2.3E-15 5E-20 151.7 32.3 352 35-408 9-386 (456)
34 PRK10836 lysine transporter; P 99.8 1.5E-15 3.2E-20 154.5 31.1 351 35-407 12-398 (489)
35 TIGR00930 2a30 K-Cl cotranspor 99.8 2.4E-15 5.1E-20 161.4 33.9 250 33-291 71-335 (953)
36 PRK11357 frlA putative fructos 99.7 3.4E-15 7.4E-20 150.3 30.5 239 35-292 5-251 (445)
37 TIGR00908 2A0305 ethanolamine 99.7 5.5E-15 1.2E-19 148.8 31.9 350 36-408 5-373 (442)
38 PRK10580 proY putative proline 99.7 5.8E-15 1.3E-19 149.1 31.6 352 35-408 6-385 (457)
39 TIGR00913 2A0310 amino acid pe 99.7 7E-15 1.5E-19 149.5 30.6 350 37-407 1-391 (478)
40 PF13520 AA_permease_2: Amino 99.7 1.5E-14 3.2E-19 145.1 28.0 351 40-409 1-376 (426)
41 PRK10197 gamma-aminobutyrate t 99.7 2.1E-14 4.6E-19 144.3 28.9 337 49-407 3-367 (446)
42 TIGR00912 2A0309 spore germina 99.7 2.5E-14 5.5E-19 140.0 25.3 337 38-407 1-353 (359)
43 COG0531 PotE Amino acid transp 99.7 1.7E-13 3.7E-18 139.1 30.8 359 35-408 9-389 (466)
44 COG0833 LysP Amino acid transp 99.7 6.9E-13 1.5E-17 129.7 32.3 354 35-407 41-427 (541)
45 TIGR03428 ureacarb_perm permea 99.6 3.4E-11 7.3E-16 122.3 35.4 253 35-296 10-273 (475)
46 KOG1286 Amino acid transporter 99.5 3.3E-13 7.2E-18 136.2 19.3 359 34-407 26-422 (554)
47 TIGR00907 2A0304 amino acid pe 99.5 4.5E-11 9.9E-16 121.7 33.8 362 36-408 10-409 (482)
48 TIGR00910 2A0307_GadC glutamat 99.5 3.4E-11 7.4E-16 122.7 30.0 238 36-290 2-248 (507)
49 TIGR03813 put_Glu_GABA_T putat 99.5 1.3E-10 2.7E-15 118.2 32.6 353 38-407 1-384 (474)
50 PRK15238 inner membrane transp 99.5 2.7E-10 5.8E-15 116.3 33.9 245 36-291 5-266 (496)
51 PF03845 Spore_permease: Spore 99.4 5.4E-11 1.2E-15 114.5 23.7 285 39-347 1-295 (320)
52 PF00324 AA_permease: Amino ac 99.3 8.5E-12 1.8E-16 126.9 11.6 282 49-342 6-317 (478)
53 KOG1289 Amino acid transporter 99.2 5.7E-08 1.2E-12 95.5 30.2 253 36-297 46-313 (550)
54 KOG3832 Predicted amino acid t 99.1 1.1E-09 2.5E-14 92.9 10.9 213 39-257 11-299 (319)
55 TIGR00800 ncs1 NCS1 nucleoside 99.0 1.9E-06 4E-11 86.7 30.3 298 37-347 11-330 (442)
56 COG3949 Uncharacterized membra 98.9 3.9E-06 8.6E-11 77.5 26.3 142 44-199 7-151 (349)
57 PRK11375 allantoin permease; P 98.7 0.00022 4.8E-09 72.3 35.4 298 37-347 24-344 (484)
58 COG1457 CodB Purine-cytosine p 98.6 4.9E-05 1.1E-09 74.5 26.6 262 105-396 82-350 (442)
59 TIGR02358 thia_cytX probable h 98.5 0.00047 1E-08 68.0 31.3 251 68-345 26-277 (386)
60 TIGR02119 panF sodium/pantothe 98.5 0.00071 1.5E-08 68.8 32.8 153 35-201 37-195 (471)
61 PRK09442 panF sodium/panthothe 98.4 0.0039 8.6E-08 63.6 34.8 154 35-200 38-195 (483)
62 TIGR00813 sss transporter, SSS 98.4 0.00057 1.2E-08 68.1 27.7 150 37-199 2-152 (407)
63 KOG1288 Amino acid transporter 98.4 3.3E-05 7.1E-10 77.5 18.1 224 58-291 87-349 (945)
64 PRK12488 acetate permease; Pro 98.3 0.0055 1.2E-07 63.5 34.0 151 35-199 64-216 (549)
65 TIGR00796 livcs branched-chain 98.2 0.0014 3.1E-08 63.8 26.3 316 47-403 2-345 (378)
66 COG0591 PutP Na+/proline sympo 98.2 0.0069 1.5E-07 61.8 30.9 149 35-195 35-187 (493)
67 PRK11017 codB cytosine permeas 98.2 0.0055 1.2E-07 60.9 29.5 205 68-298 39-245 (404)
68 TIGR02711 symport_actP cation/ 98.2 0.014 3.1E-07 60.4 35.2 150 35-198 64-215 (549)
69 PRK09395 actP acetate permease 98.1 0.015 3.2E-07 60.3 34.2 150 35-198 66-217 (551)
70 TIGR03648 Na_symport_lg probab 98.1 0.016 3.5E-07 60.2 32.8 151 35-198 29-180 (552)
71 TIGR02121 Na_Pro_sym sodium/pr 98.1 0.019 4.1E-07 58.6 32.1 154 35-198 33-191 (487)
72 PRK10484 putative transporter; 98.0 0.016 3.4E-07 59.8 31.0 156 35-199 35-197 (523)
73 PF00474 SSF: Sodium:solute sy 98.0 0.00065 1.4E-08 67.7 19.7 149 37-198 5-155 (406)
74 COG1953 FUI1 Cytosine/uracil/t 98.0 0.022 4.8E-07 56.5 31.1 346 35-397 36-406 (497)
75 COG1914 MntH Mn2+ and Fe2+ tra 97.9 0.026 5.7E-07 55.6 28.3 364 38-431 15-406 (416)
76 PF02554 CstA: Carbon starvati 97.9 0.00075 1.6E-08 64.1 16.0 146 39-197 51-197 (376)
77 PF02133 Transp_cyt_pur: Perme 97.8 0.00011 2.4E-09 74.1 10.4 243 36-293 5-258 (440)
78 PRK15419 proline:sodium sympor 97.8 0.055 1.2E-06 55.5 33.4 152 35-199 37-196 (502)
79 PRK00701 manganese transport p 97.7 0.078 1.7E-06 53.1 30.5 78 104-191 94-173 (439)
80 KOG2082 K+/Cl- cotransporter K 97.6 0.034 7.3E-07 57.2 23.4 150 47-200 122-286 (1075)
81 TIGR00835 agcS amino acid carr 97.6 0.0033 7.2E-08 62.0 16.0 149 37-198 44-200 (425)
82 PRK15015 carbon starvation pro 97.3 0.0049 1.1E-07 62.7 13.0 100 43-146 86-186 (701)
83 PF01566 Nramp: Natural resist 97.2 0.13 2.8E-06 50.3 22.5 231 104-348 42-289 (358)
84 KOG2083 Na+/K+ symporter [Inor 97.2 0.0019 4.2E-08 64.5 9.3 237 37-289 27-276 (643)
85 PF01235 Na_Ala_symp: Sodium:a 97.2 0.18 3.8E-06 49.7 22.8 150 35-196 14-171 (416)
86 PF05525 Branch_AA_trans: Bran 97.2 0.19 4.1E-06 49.8 22.9 331 41-405 4-353 (427)
87 COG0733 Na+-dependent transpor 97.1 0.36 7.8E-06 47.5 28.8 238 39-288 8-266 (439)
88 COG1966 CstA Carbon starvation 96.9 0.58 1.3E-05 47.1 30.5 104 40-147 52-156 (575)
89 COG4147 DhlC Predicted symport 96.3 1.4 3E-05 43.7 27.9 289 102-408 102-442 (529)
90 PRK15433 branched-chain amino 96.1 1.6 3.4E-05 43.5 20.9 328 41-404 9-355 (439)
91 PHA02764 hypothetical protein; 95.7 1.9 4E-05 40.5 22.4 96 35-134 9-106 (399)
92 PF05525 Branch_AA_trans: Bran 94.8 0.3 6.5E-06 48.4 10.9 81 105-195 262-342 (427)
93 TIGR00796 livcs branched-chain 94.5 0.45 9.8E-06 46.6 11.2 82 104-195 255-336 (378)
94 KOG2466 Uridine permease/thiam 94.2 6.7 0.00015 39.1 19.5 296 35-347 51-378 (572)
95 COG1115 AlsT Na+/alanine sympo 93.3 9.2 0.0002 37.9 24.6 327 35-386 58-418 (452)
96 PF00209 SNF: Sodium:neurotran 93.1 12 0.00026 38.6 28.0 107 176-288 192-301 (523)
97 COG1114 BrnQ Branched-chain am 91.8 2 4.3E-05 41.9 10.8 131 50-195 208-344 (431)
98 KOG2349 Na+:iodide/myo-inosito 91.0 2.8 6E-05 43.1 11.5 240 35-295 42-301 (585)
99 PF02028 BCCT: BCCT family tra 91.0 20 0.00043 36.5 23.7 165 36-203 71-259 (485)
100 PRK15433 branched-chain amino 87.3 4.1 8.8E-05 40.6 9.4 80 105-195 266-345 (439)
101 COG1292 BetT Choline-glycine b 83.8 43 0.00093 34.2 14.6 118 36-155 84-224 (537)
102 TIGR01197 nramp NRAMP (natural 82.2 55 0.0012 32.4 29.3 132 48-193 12-145 (390)
103 COG4145 PanF Na+/panthothenate 79.8 62 0.0014 31.5 26.7 137 37-187 38-180 (473)
104 KOG3660 Sodium-neurotransmitte 77.1 1E+02 0.0022 32.5 21.7 51 41-91 39-90 (629)
105 COG0814 SdaC Amino acid permea 68.1 1.3E+02 0.0029 29.9 18.6 147 263-409 217-377 (415)
106 PRK09928 choline transport pro 65.3 2E+02 0.0042 30.8 26.0 162 36-199 89-272 (679)
107 COG1114 BrnQ Branched-chain am 59.4 1.9E+02 0.0041 28.7 24.3 118 273-404 230-354 (431)
108 PF05805 L6_membrane: L6 membr 58.6 34 0.00073 30.0 6.2 63 380-442 45-117 (195)
109 PF05915 DUF872: Eukaryotic pr 57.1 48 0.001 26.4 6.4 26 39-64 38-63 (115)
110 PRK09950 putative transporter; 51.5 2.9E+02 0.0063 28.4 28.8 162 37-200 81-266 (506)
111 PLN00151 potassium transporter 51.2 3.6E+02 0.0079 29.4 19.2 34 234-274 347-380 (852)
112 PF02705 K_trans: K+ potassium 50.2 3.1E+02 0.0067 28.4 16.9 36 233-275 203-238 (534)
113 KOG1289 Amino acid transporter 43.3 3.9E+02 0.0085 27.6 14.4 46 105-151 326-371 (550)
114 PF02028 BCCT: BCCT family tra 39.9 1.7E+02 0.0036 30.0 8.8 66 137-202 404-472 (485)
115 PRK09598 lipid A phosphoethano 39.0 3.9E+02 0.0084 27.7 11.4 17 391-407 127-143 (522)
116 PRK10263 DNA translocase FtsK; 38.4 6.4E+02 0.014 29.4 13.3 23 273-295 25-47 (1355)
117 KOG2466 Uridine permease/thiam 33.2 1.7E+02 0.0038 29.6 7.3 181 103-289 321-514 (572)
118 PRK03356 L-carnitine/gamma-but 29.8 6.3E+02 0.014 26.0 24.3 161 37-199 83-268 (504)
119 TIGR00909 2A0306 amino acid tr 28.9 5.8E+02 0.013 25.2 13.1 46 105-151 265-310 (429)
120 PLN00148 potassium transporter 28.6 3.7E+02 0.008 29.2 9.3 177 260-438 9-244 (785)
121 TIGR00842 bcct choline/carniti 28.4 6.4E+02 0.014 25.6 24.1 161 37-199 34-218 (453)
122 PRK13183 psbN photosystem II r 27.8 74 0.0016 20.6 2.5 28 271-298 6-33 (46)
123 PRK11598 putative metal depend 27.4 6.3E+02 0.014 26.3 10.7 13 395-407 131-143 (545)
124 CHL00020 psbN photosystem II p 27.2 62 0.0014 20.6 2.1 27 272-298 4-30 (43)
125 CHL00182 tatC Sec-independent 25.6 5E+02 0.011 23.9 8.7 37 310-346 75-111 (249)
126 PF07086 DUF1352: Protein of u 25.5 3E+02 0.0066 24.0 6.8 53 396-448 82-134 (186)
127 PF02468 PsbN: Photosystem II 24.9 78 0.0017 20.2 2.2 26 273-298 5-30 (43)
128 PF12794 MscS_TM: Mechanosensi 24.8 6.4E+02 0.014 24.4 11.9 39 269-307 46-84 (340)
129 PF08019 DUF1705: Domain of un 24.5 4.2E+02 0.0091 22.1 9.8 18 390-407 71-88 (156)
130 KOG4812 Golgi-associated prote 23.5 1.3E+02 0.0028 27.3 4.1 22 414-435 222-243 (262)
131 PRK10745 trkD potassium transp 21.5 9.8E+02 0.021 25.3 15.4 33 235-274 216-248 (622)
132 PF04911 ATP-synt_J: ATP synth 20.2 37 0.0008 22.8 0.2 38 231-268 11-48 (54)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-55 Score=417.40 Aligned_cols=389 Identities=21% Similarity=0.314 Sum_probs=344.9
Q ss_pred cCCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhh---cCCCccCCHHHHHHHH
Q 013039 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM---VPGKRFDRYHELGQHA 113 (451)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~---~~~~~~~sy~~~~~~~ 113 (451)
++..|..++..|+.+.++|+|+|++|+||+++|++.|.+..++++.++.|+++.+++|.+. +.+....+|.+.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 5568999999999999999999999999999999999999999999999999999998652 2222245777777666
Q ss_pred h----------cccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCc
Q 013039 114 F----------GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNF 183 (451)
Q Consensus 114 ~----------G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l 183 (451)
+ |+ ++|.+++.++.+.++|.|++|++++++++.++.+... ...++.+.++.+..+..+|++++|++
T Consensus 124 ~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~---~~~~s~~~~i~~~~~~~lll~~Ir~L 199 (449)
T KOG1304|consen 124 MEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS---PGVLSVRLYILIQLPPLLLLNLIRNL 199 (449)
T ss_pred HcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC---CCCccHHHHHHHHHHHHHHHHHHHhh
Confidence 4 54 5679999999999999999999999999999998332 23567889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCC
Q 013039 184 NAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEK 263 (451)
Q Consensus 184 ~~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~ 263 (451)
|.++.+|.++.++.+..+.++.++.+.... ..+..+...++.+++..+|+.+|||.|+.++.|+.++| |+
T Consensus 200 k~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~------~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M----k~ 269 (449)
T KOG1304|consen 200 KILSPFSLFANVFILVGLAIIMYYLVQDLP------PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM----KK 269 (449)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhccC------CccccccccchhhhHHHHHHHHHHhccceEEEehhhcc----cC
Confidence 999999999999888777777666555432 22223345668999999999999999999999999999 89
Q ss_pred CCCCCCc-hHHHHHHHHHHHHHHHHHhhhhhhccCcchhHHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHHH
Q 013039 264 PSKGPMW-RGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIET 342 (451)
Q Consensus 264 p~~~~~~-~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~ 342 (451)
|++++-+ +++..+|.+++++|+.+|++||+.|||++++.+++|+|+ +++...+++++++.++.+||++++|..+.+++
T Consensus 270 P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~ 348 (449)
T KOG1304|consen 270 PQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEP 348 (449)
T ss_pred hhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHH
Confidence 9875322 777899999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HhhhccCCCchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCC---cchhHHHHH
Q 013039 343 LLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRK---YSLSWCINW 419 (451)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~~---~~~~~~~~~ 419 (451)
.+++|.++++.++..+.+|..+++++.++|..+|+++.+++++|+++++.+.+++|++++++.++.+. .+|+++.+.
T Consensus 349 ~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni 428 (449)
T KOG1304|consen 349 GIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNI 428 (449)
T ss_pred hHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHH
Confidence 99888776667899999999999999999999999999999999999999999999999999987654 357889999
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 013039 420 ICIVLGLCLMILSPIGGLRQI 440 (451)
Q Consensus 420 ~~~~~g~~~~v~g~~~si~~l 440 (451)
.++++|++.++.|+|.++.++
T Consensus 429 ~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 429 VLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHHHHHHHhhhhhcC
Confidence 999999999999999999864
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.6e-55 Score=441.09 Aligned_cols=395 Identities=16% Similarity=0.230 Sum_probs=323.4
Q ss_pred CCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhccc
Q 013039 38 RNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEK 117 (451)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~~ 117 (451)
+..|..++++|++|+++|+|+|++|++|+++||++|++++++++.++.|+++++.+++++ ++ ..+|+|++++++|+
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~--~~sY~~la~~~~G~- 133 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TN--IRTYEGVARVLLGP- 133 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC--CCCHHHHHHHHhCH-
Confidence 356779999999999999999999999999999999999999999999999999998875 33 34999999999997
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCC--CC-cchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 013039 118 LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPC--KE-IKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (451)
Q Consensus 118 ~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~--~~-~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 194 (451)
+|++++++++.+.++|.|++|+++.+|.++.+++.....+. .. .++..+.+++.++++|++++|+++.++++|.+++
T Consensus 134 ~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~ 213 (467)
T PTZ00206 134 WGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAV 213 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHH
Confidence 67799999999999999999999999999988864321100 01 1233344556778899999999999999999999
Q ss_pred HHHHHHHHHHhhheeeeccCCCccc---ccc---ccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCC
Q 013039 195 VMSLSYSTIAWSASVRKGVQPDVAY---GYK---AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGP 268 (451)
Q Consensus 195 ~~~v~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~ 268 (451)
.+.+..++.+++.+..++.+++.+. ... .........+.+.++++++|||.||.+++++++|| |||+.++
T Consensus 214 ~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M----~~~t~~~ 289 (467)
T PTZ00206 214 SFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDM----TNRSVGK 289 (467)
T ss_pred HHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhh----cccchhH
Confidence 8766555555555554443332211 000 00011122468999999999999999999999999 7887777
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhhhccCcchhHHhhCC-CChhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHhhhc
Q 013039 269 MWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSL-EKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK 347 (451)
Q Consensus 269 ~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~~~~il~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~ 347 (451)
+.+++..++.+++++|.++|++||+.||++++++++.|+ |.++....++++++.+.++.+||++.+|+|+.+++.+..+
T Consensus 290 ~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~ 369 (467)
T PTZ00206 290 FVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWD 369 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCC
Confidence 889999999999999999999999999999999999999 5567788889999999999999999999999999987443
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHh---cCCCcchhHHHHHHHHHH
Q 013039 348 LNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIY---KPRKYSLSWCINWICIVL 424 (451)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~---~~~~~~~~~~~~~~~~~~ 424 (451)
.+ +...+++...+..+++.++++|+.+|+++.+++++|+++++.++|++|+++|++.. +++...++++.++.++++
T Consensus 370 ~~-~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~ 448 (467)
T PTZ00206 370 AR-KVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLIT 448 (467)
T ss_pred cc-cCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHH
Confidence 32 22344555566667778899999999999999999999999999999999999842 223333466789999999
Q ss_pred HHHHHHHHhHHHHHHHH
Q 013039 425 GLCLMILSPIGGLRQII 441 (451)
Q Consensus 425 g~~~~v~g~~~si~~l~ 441 (451)
|++..+.|||+++++.+
T Consensus 449 Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 449 GVIAIVFGTGATIWGVT 465 (467)
T ss_pred HhheEEecchhHhhHHh
Confidence 99999999999999876
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-53 Score=412.08 Aligned_cols=409 Identities=46% Similarity=0.877 Sum_probs=358.7
Q ss_pred hhccccccccccccCCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhh---cCC
Q 013039 24 KQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM---VPG 100 (451)
Q Consensus 24 ~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~---~~~ 100 (451)
++.+++++++..++|+.+|+++.++.+|.++|.|+|+||||+++.||..|++++++.++++.||..+|.+|.+. .++
T Consensus 22 ~~~~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~ 101 (437)
T KOG1303|consen 22 RKSDVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPG 101 (437)
T ss_pred cccccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 44556667777788999999999999999999999999999999999999999999999999999999998764 344
Q ss_pred CccCCHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcC
Q 013039 101 KRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL 180 (451)
Q Consensus 101 ~~~~sy~~~~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~ 180 (451)
+|+++|.|+++++||++. ++++.+++...+++.|+.|.+..+|++..+.+....... ..+.+.|++++.++.+|++++
T Consensus 102 ~r~~~Y~dl~~~afG~~~-~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~-~l~~~~f~iif~~i~~~~s~l 179 (437)
T KOG1303|consen 102 KRRYRYPDLGQAAFGPKG-RLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN-SLDKQYFIIIFGLIVLPLSQL 179 (437)
T ss_pred ccCCChHHHHHHHhCCCc-eEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-cccceehhhhHHHHHHHHHHC
Confidence 556779999999999865 899999999999999999999999999999998765432 334678999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhheeeeccCCCcc-ccccccCcccchhhHHHHhhhHhhhcccceeeccccccccc
Q 013039 181 PNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVA-YGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPS 259 (451)
Q Consensus 181 ~~l~~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~ 259 (451)
||++.+++.|..+.+.++.+..+.+..+..+|...... ...... ......+++++++.|+|.+|.++|++++.|
T Consensus 180 p~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~---~~~~~~f~a~g~iaFaf~gH~v~peIq~tM-- 254 (437)
T KOG1303|consen 180 PNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL---GTIPTVFTALGIIAFAYGGHAVLPEIQHTM-- 254 (437)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC---CCCcchhhhhhheeeeecCCeeeeehHhhc--
Confidence 99999999999999999888887777777776544211 121111 111112899999999999999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhccCcchhHHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHH
Q 013039 260 TPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDM 339 (451)
Q Consensus 260 ~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~ 339 (451)
|+|.+ ++|++.+++.+++.+|+..++.||++|||+++++++.|+.++.|+...+++++.++++.++.....|+.+.
T Consensus 255 --k~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~ 330 (437)
T KOG1303|consen 255 --KSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDV 330 (437)
T ss_pred --CCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHH
Confidence 88877 55999999999999999999999999999999999999976689999999999999999999999999999
Q ss_pred HHHHhhhccCC--CchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCcchhHHH
Q 013039 340 IETLLVKKLNF--SPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCI 417 (451)
Q Consensus 340 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~~~~~~~~~ 417 (451)
+|+....+.+. ++....|.+.|..+++.+.++|..+|.|+.+.+++|++....+++++|+++|++.+|.++...+|+.
T Consensus 331 ~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~ 410 (437)
T KOG1303|consen 331 VEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLL 410 (437)
T ss_pred HHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 99998865441 2456689999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHH-HHHHHHHHHHHhHHHHHHHHHh
Q 013039 418 NWIC-IVLGLCLMILSPIGGLRQIILQ 443 (451)
Q Consensus 418 ~~~~-~~~g~~~~v~g~~~si~~l~~~ 443 (451)
++.+ ++++++.++....+++++++.+
T Consensus 411 ~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 411 NWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 8888 8999999999999999988753
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=3.6e-53 Score=422.39 Aligned_cols=393 Identities=29% Similarity=0.549 Sum_probs=337.1
Q ss_pred CCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCccCCHHHHHHHHhcc
Q 013039 38 RNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVP-GKRFDRYHELGQHAFGE 116 (451)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~-~~~~~sy~~~~~~~~G~ 116 (451)
||.|+++++++++|+++|+|+|++|++++++||++|++++++++.++.+|.+++.|+++..+ +.+..+|+|++++++|+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999987543 34466999999999998
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 013039 117 KLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVM 196 (451)
Q Consensus 117 ~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 196 (451)
+ +++++++++.+.++|.+++|++..+|.++++++...+. ...++..+.++..++++|++++|+++.+++.|.+++++
T Consensus 81 ~-~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~--~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~ 157 (409)
T PF01490_consen 81 K-GKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD--LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFS 157 (409)
T ss_pred c-ccccccchheeccccccceeEEEeeeeeeccccccccc--ccccccccccccccccccccccchhhHHHHHhhhhhhc
Confidence 5 56999999999999999999999999999998875532 23566778888889999999999999999999999997
Q ss_pred HHHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCC-CCCchHHHH
Q 013039 197 SLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK-GPMWRGVVV 275 (451)
Q Consensus 197 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~-~~~~~~~~~ 275 (451)
.+..+...++........++.+...+......++.+++.++++++|||.||+++|++.+|| |+|++ +++.++...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m----~~~~~~~~~~~~~~~ 233 (409)
T PF01490_consen 158 IFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEM----KDPSKFKKMKKVLSI 233 (409)
T ss_pred cceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeec----cCCccccccceeeee
Confidence 6643222222222222222222222222235567899999999999999999999999999 77887 567799999
Q ss_pred HHHHHHHHHHHHHhhhhhhccCcchhHHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHhhhc--------
Q 013039 276 AYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK-------- 347 (451)
Q Consensus 276 ~~~~~~~~Y~~~~~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~-------- 347 (451)
++.+++++|.++|+.||++||++++++++.|++++++...++++++.++++.+||+..+|.++.+++.+.++
T Consensus 234 s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~ 313 (409)
T PF01490_consen 234 SMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSP 313 (409)
T ss_pred hhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheecccccccccc
Confidence 999999999999999999999999999999999888899999999999999999999999999999998763
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCcchhH-----HHHHHHH
Q 013039 348 LNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSW-----CINWICI 422 (451)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~~~~~~~-----~~~~~~~ 422 (451)
.+++.++++|...|+.+++.+.++|..+|+++.+++++|++++..+.|++|+++|++.+++++.+.++ ...+..+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (409)
T PF01490_consen 314 KNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIII 393 (409)
T ss_pred ccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEE
Confidence 23345578899999999999999999999999999999999999999999999999999877644332 3467888
Q ss_pred HHHHHHHHHHhHHHH
Q 013039 423 VLGLCLMILSPIGGL 437 (451)
Q Consensus 423 ~~g~~~~v~g~~~si 437 (451)
++|++.++.|+|+++
T Consensus 394 ~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 394 VFGVVLMVFGTYQSI 408 (409)
T ss_pred EEeeehhHHhHHHHc
Confidence 999999999999876
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=3e-48 Score=386.51 Aligned_cols=392 Identities=17% Similarity=0.270 Sum_probs=323.1
Q ss_pred cCCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhh----cCCCc------cCCH
Q 013039 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM----VPGKR------FDRY 106 (451)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~----~~~~~------~~sy 106 (451)
.++.+..++.+++++..+|.|+|+||++|++.||++|++.+++.++++.||++++.++..+ ++... ..+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 4577889999999999999999999999999999999999999999999999999986432 22211 1267
Q ss_pred HHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhH
Q 013039 107 HELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAI 186 (451)
Q Consensus 107 ~~~~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 186 (451)
.|+++..+||+++ .+........+++.|+.|++..++.+..+- ..++.+.|++++.++..|++++|+++++
T Consensus 123 ~e~~~~~~G~~~~-~~~~~~~~v~l~~~~v~~li~~~~~~~~l~--------~~~~~~~~~~i~~~v~~~~~~i~sl~~l 193 (473)
T PLN03074 123 FEVLDGLLGPYWK-NVGLAFNCTFLLFGSVIQLIACASNIYYIN--------DNLDKRTWTYIFGACCATTVFIPSFHNY 193 (473)
T ss_pred HHHHHHhcChhHH-HHHHHHHhhhhHHHHHHHHHHHhhhhhhhC--------CCcCCCeEEeehHHHHHHHHHccCHHHH
Confidence 9999999998655 788888889999999999998887766552 2456688888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCC
Q 013039 187 AGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK 266 (451)
Q Consensus 187 ~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~ 266 (451)
+++|.+++.+++.....+++..+.++..++.++. .+.++..++.++++++|+|.||.++|++++|| |||++
T Consensus 194 ~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~-----~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M----~~P~~ 264 (473)
T PLN03074 194 RIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHS-----GPTKLVLYFTGATNILYTFGGHAVTVEIMHAM----WKPQK 264 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-----CchhHHHHHHHHHHHHHHhcccccHHHHHHhc----cChhc
Confidence 9999999987655444444444444433333221 23456778888999999999999999999999 89988
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhccCcchh--HHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHh
Q 013039 267 GPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLL 344 (451)
Q Consensus 267 ~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~~~--~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~ 344 (451)
++ +....+...++.+|+.+++.||+.|||++.+ +.+.|+|++. ...+++++++++++.+||+.+.|+.+.+|+..
T Consensus 265 F~--~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~ 341 (473)
T PLN03074 265 FK--YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSG-WRDAAVILMLIHQFITFGFACTPLYFVWEKAI 341 (473)
T ss_pred cc--chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 66 8888999999999999999999999998764 5677788644 56899999999999999999999999998886
Q ss_pred hhccCCCchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCC-------------Cc
Q 013039 345 VKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR-------------KY 411 (451)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~-------------~~ 411 (451)
..+ .++....|..+|+.+++.++++|..+|+|+.+++++|+++++.+++++|+++|++.++++ ..
T Consensus 342 ~~~--~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~ 419 (473)
T PLN03074 342 GVH--DTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLP 419 (473)
T ss_pred ccc--ccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCC
Confidence 543 234467889999999999999999999999999999999999999999999999866542 11
Q ss_pred chh--HHHHHHHHHH-HHHHHHHHhHHHHHHHHHhhhhcccCC
Q 013039 412 SLS--WCINWICIVL-GLCLMILSPIGGLRQIILQAKDYKFYS 451 (451)
Q Consensus 412 ~~~--~~~~~~~~~~-g~~~~v~g~~~si~~l~~~~~~~~~~~ 451 (451)
+|+ .+.++.++++ +++.++.|+|.|+.+++++.+++++|+
T Consensus 420 ~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~ 462 (473)
T PLN03074 420 SWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFA 462 (473)
T ss_pred ccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhh
Confidence 222 3678888875 555578999999999999999988774
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-44 Score=348.17 Aligned_cols=393 Identities=22% Similarity=0.333 Sum_probs=335.3
Q ss_pred cCCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhcc
Q 013039 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGE 116 (451)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~ 116 (451)
+++.+.+.+++++.|+++|+|++++|++|++.|.+.|++++.+++.++.++.+++.+++++.+. + +|+++++..+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~-~--ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE-R--TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC-C--CHHHHHHHHcCC
Confidence 4567889999999999999999999999999999999999999999999999999999986543 2 999999999996
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCC--c-chhh-HHHHHHHHHHHHhcCCCchhHHHHHHH
Q 013039 117 KLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKE--I-KLSY-FIMIFASVHFVLSHLPNFNAIAGVSLA 192 (451)
Q Consensus 117 ~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~--~-~~~~-~~~i~~~i~~pl~~~~~l~~l~~~s~~ 192 (451)
.|+....+.......| |++|++.++|.++.+.......+... + ++.. +.+....+++||++.|+++.+++.|.+
T Consensus 80 -~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~ 157 (411)
T KOG1305|consen 80 -LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSAL 157 (411)
T ss_pred -CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 6777777777777777 79999999999997766544322211 2 3333 567778899999999999999999999
Q ss_pred HHHHHHHHHHHHhhheeeecc-CCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCCch
Q 013039 193 AAVMSLSYSTIAWSASVRKGV-QPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWR 271 (451)
Q Consensus 193 ~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~ 271 (451)
+....+..+.++++..+.... .+...+. .+...++.+.+.++|++.|+|.||++..++++|| |||+++++.+
T Consensus 158 s~~~~~~fv~~vv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El----~~~s~~~i~~ 230 (411)
T KOG1305|consen 158 SLASVVYFVVLVVYKYFQGPCALGRLSYL---VPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNEL----KDRSVKKIQR 230 (411)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCcccc---cCCcchhhhhhhhhhhhheeeeccccceeeeeee----eCchHHHHHH
Confidence 999888777777776665432 1111111 1112233689999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCcchhHHhhCCCChhHH------HHHHHHHHHHHHHhhhccccccHHHHHHHHhh
Q 013039 272 GVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWL------IVMANFFVVVHVIGSYQIYAMPVFDMIETLLV 345 (451)
Q Consensus 272 ~~~~~~~~~~~~Y~~~~~~gy~~fg~~~~~~il~~~~~~~~~------~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~ 345 (451)
+...+...++++|..+|.+||+.|||++.+|++.++++.+.. ...++..+.++++.++|+..+|+|..+.+...
T Consensus 231 v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~ 310 (411)
T KOG1305|consen 231 VSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLF 310 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhc
Confidence 999999999999999999999999999999999999865433 57999999999999999999999999888877
Q ss_pred hccC--CCchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Q 013039 346 KKLN--FSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIV 423 (451)
Q Consensus 346 ~~~~--~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~ 423 (451)
+++. +..+..++.+++..++....+.|+.+|+++.+++++|++++..++|++|+++|++..|+ +.+++...+...+
T Consensus 311 ~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~ 388 (411)
T KOG1305|consen 311 PYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLI 388 (411)
T ss_pred ccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHH
Confidence 6543 24566788899999999999999999999999999999999999999999999999987 4556678899999
Q ss_pred HHHHHHHHHhHHHHHHHHHh
Q 013039 424 LGLCLMILSPIGGLRQIILQ 443 (451)
Q Consensus 424 ~g~~~~v~g~~~si~~l~~~ 443 (451)
+++...++|+...+.++..+
T Consensus 389 ~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 389 LGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999988765
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-42 Score=311.16 Aligned_cols=398 Identities=18% Similarity=0.249 Sum_probs=341.3
Q ss_pred ccccCCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCc-----cCCHHH
Q 013039 34 ITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKR-----FDRYHE 108 (451)
Q Consensus 34 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~-----~~sy~~ 108 (451)
++.+.+++-+|+.+|..|++-|.=+++||+|....||. ++..++.++.+++||+.++.+|..+....+ +++|-+
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYva 189 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVA 189 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHH
Confidence 45567899999999999999999999999999998888 999999999999999999999976433222 579999
Q ss_pred HHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHH
Q 013039 109 LGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAG 188 (451)
Q Consensus 109 ~~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 188 (451)
++..+++|+.|...+.+.+++.+..+|+.|.+..+|.+..-+|.. ..++..|+++.....+|.+++|++|..+.
T Consensus 190 IA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~------svd~~sWm~i~~a~LLpc~FLk~Lk~VS~ 263 (524)
T KOG4303|consen 190 IADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL------SVDKASWMMITSASLLPCSFLKDLKIVSR 263 (524)
T ss_pred HHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC------CccccchhhhhhHHHhhhHHHHHHHHHHH
Confidence 999999999998889999999999999999999999998877643 35678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCC
Q 013039 189 VSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGP 268 (451)
Q Consensus 189 ~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~ 268 (451)
+|.+..+.-+..=++++.+|..... +++|....-.-+..+++.++|+++|+|..|..+|++...| ++|+++.
T Consensus 264 lSf~ct~sH~viN~i~v~YCLs~~~----dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM----~~ps~Fn 335 (524)
T KOG4303|consen 264 LSFFCTISHLVINLIMVLYCLSFVS----DWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNM----KNPSQFN 335 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----hccceeEEEEEEcccCceEEEEEEEeeeceeecccccccc----CChhHhe
Confidence 9888888655444555555554321 2233322224466788999999999999999999999999 9999977
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhhhccCcchhHHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHhhhcc
Q 013039 269 MWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL 348 (451)
Q Consensus 269 ~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~ 348 (451)
..+.-+=+...++-..+|..||++|++.++..|++|+|+ ...+.+++++..+-.+.|||+-++.+.+.+++-+.+..
T Consensus 336 --~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~-qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~ 412 (524)
T KOG4303|consen 336 --VMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN-QSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGY 412 (524)
T ss_pred --eeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc-cchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCC
Confidence 777778888889999999999999999999999999986 45888999999999999999999999999998776543
Q ss_pred CC----------CchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCcchhHHHH
Q 013039 349 NF----------SPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCIN 418 (451)
Q Consensus 349 ~~----------~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~~~~~~~~~~ 418 (451)
.+ ..-+.+...+|+.+++.+.+.|+++|.+..+++++|+++++.++|+.|++++++..++.....++..+
T Consensus 413 p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD 492 (524)
T KOG4303|consen 413 PQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFD 492 (524)
T ss_pred CCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhh
Confidence 21 11244556789999999999999999999999999999999999999999999999877666677889
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhhccc
Q 013039 419 WICIVLGLCLMILSPIGGLRQIILQAKDYKF 449 (451)
Q Consensus 419 ~~~~~~g~~~~v~g~~~si~~l~~~~~~~~~ 449 (451)
..+++.|..+.+.|.|.|..++++.++..-.
T Consensus 493 ~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~ 523 (524)
T KOG4303|consen 493 QGIIIMGCSVCVSGVYFSSMELIRAINSADS 523 (524)
T ss_pred eeEEEEeeeEEEEeEehhhHHHHHHHhccCC
Confidence 9999999999999999999999999987643
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-34 Score=280.33 Aligned_cols=391 Identities=17% Similarity=0.227 Sum_probs=306.7
Q ss_pred cccCCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHh
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~ 114 (451)
..+++.+.+++++++.++++|+|+|++|++++..|+..+++++++.+.+++++++++.|+..+.+..+ .++.+++++.+
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~ 82 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGK-ASITSLVEDYL 82 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccHHHHHHHHh
Confidence 34667888999999999999999999999999999999999999999999999999999998766542 59999999999
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 013039 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (451)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 194 (451)
||+++ ++.++.+.+.+++.+.+|....+|.+++.+++....+. .+|....+++..++.++++.++...++..+.+..
T Consensus 83 G~~~~-~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~--~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~ 159 (415)
T COG0814 83 GKKGG-ILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNP--LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVF 159 (415)
T ss_pred CcchH-HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCC--cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 98655 99999999999999999999999999999997553211 5677788888888888999999999999999988
Q ss_pred HHHHHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCCchHHH
Q 013039 195 VMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274 (451)
Q Consensus 195 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~~~~ 274 (451)
...+..++...+. ..+.+.+. ....+... +..+.++..++|+++|||+||+++|++.+|| |++++++.+|+..
T Consensus 160 ~~v~~~~~l~~~~-~~~~~~~~-l~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~----~~~~~~~~~k~~~ 232 (415)
T COG0814 160 GKVIYLVLLVVYL-IPHWNPAN-LFALPSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYM----RKNSKKAVRKAIL 232 (415)
T ss_pred HHHHHHHHHHHHH-hcccCHHH-Hhcccccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHh----ccchhHHHHHHHH
Confidence 8655444433333 22221111 11110010 3678899999999999999999999999999 4555545779999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCcchhHHhhCCCChh-------------HHHHHHHHHHHHHHHhhhccccccHHHHHH
Q 013039 275 VAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPT-------------WLIVMANFFVVVHVIGSYQIYAMPVFDMIE 341 (451)
Q Consensus 275 ~~~~~~~~~Y~~~~~~gy~~fg~~~~~~il~~~~~~~-------------~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~ 341 (451)
.+..+..++|..+++.+|..+|+++.++++++.++++ ......+++..+.+.+||--.....+|..+
T Consensus 233 ~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~ 312 (415)
T COG0814 233 IGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLA 312 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhh
Confidence 9999999999999999999999999999999997653 244567777888888888778888888888
Q ss_pred HHhhhccCC----CchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCcchhHHH
Q 013039 342 TLLVKKLNF----SPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCI 417 (451)
Q Consensus 342 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~~~~~~~~~ 417 (451)
+.++++..+ +.............+..+...+...+..+.+.+.+|+.....+.+..|...+.|....+..+.++..
T Consensus 313 ~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~ 392 (415)
T COG0814 313 DLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLL 392 (415)
T ss_pred HHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchh
Confidence 887752211 1222333344445556666666777878888888888888888888887777666655544443356
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 013039 418 NWICIVLGLCLMILSPIGG 436 (451)
Q Consensus 418 ~~~~~~~g~~~~v~g~~~s 436 (451)
.++++++|+..+....+..
T Consensus 393 ~~~v~~~Gi~~~~~~~~~~ 411 (415)
T COG0814 393 LLLVLLFGILVILSPFLAT 411 (415)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7888888888887776654
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.96 E-value=3.4e-27 Score=230.70 Aligned_cols=372 Identities=17% Similarity=0.266 Sum_probs=271.6
Q ss_pred CCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhccc
Q 013039 38 RNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEK 117 (451)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~~ 117 (451)
++.+.+++++.+.++++|+|+|+||++.+..|..++++++++++.+++++++++.|...+.++. .++.+++++.+||+
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~--~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEG--SSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHhChH
Confidence 3567889999999999999999999999999999999999999999999999999998766553 49999999999985
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 013039 118 LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMS 197 (451)
Q Consensus 118 ~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 197 (451)
|+++..++..+..|+.+.+|..-.++.+++.++...+. +.+++....++.++...+... +-+...+++..-+...
T Consensus 79 -g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~---~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~ 153 (394)
T PF03222_consen 79 -GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGT---DLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGM 153 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 55999999999999999999999999999999876531 234444444444333333222 3334444444443333
Q ss_pred HHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCCchHHHHHH
Q 013039 198 LSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAY 277 (451)
Q Consensus 198 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~ 277 (451)
+..........+.+.+.+.... ..+.+.++...+.++|++++||..|+++|++.+.++ +|++| .+|++..+.
T Consensus 154 i~~~~~l~~~~~p~~~~~~L~~---~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~---~d~~k--~~~ai~~Gs 225 (394)
T PF03222_consen 154 IISFIILVVYLIPHWNPSNLLD---APPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLG---GDPKK--IRKAIIIGS 225 (394)
T ss_pred HHHHHHHHHHHhhhcCHHHhhc---cccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhC---ccHHH--HHHHHHHHH
Confidence 3322222222232222222111 122356788999999999999999999999999994 33333 669999999
Q ss_pred HHHHHHHHHHHhhhhhhc-----------cCcch--hHHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHh
Q 013039 278 IVVALCYFPVALIGYWMF-----------GNKVE--DNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLL 344 (451)
Q Consensus 278 ~~~~~~Y~~~~~~gy~~f-----------g~~~~--~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~ 344 (451)
.+..++|++.-....... +++.. ...+.+..++.+...+..++..+++.+||--....++|.+.+.+
T Consensus 226 ~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~ 305 (394)
T PF03222_consen 226 LIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLF 305 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988755443322 11111 13444555557788889999999999999999999999999998
Q ss_pred hhccCCCchhHHHHHHHHHHHHHHHHHHHhccc-hhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCcc-h----hHHHH
Q 013039 345 VKKLNFSPTRLLRFVVRNLYVASTMFIGITFPF-FGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYS-L----SWCIN 418 (451)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~-~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~~~~-~----~~~~~ 418 (451)
+.+++ + ..|.....+...++++++...|+ |...+++.| ...+++..++|+++..|.|++++.+ + .+...
T Consensus 306 k~~~~-~---~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l 380 (394)
T PF03222_consen 306 KLKNN-S---SGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTL 380 (394)
T ss_pred cCCcc-c---cchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHH
Confidence 76322 2 23344556677789999998887 889999999 8889999999999999988765433 1 23445
Q ss_pred HHHHHHHHHHH
Q 013039 419 WICIVLGLCLM 429 (451)
Q Consensus 419 ~~~~~~g~~~~ 429 (451)
..++++++++.
T Consensus 381 ~~~~~~~i~ii 391 (394)
T PF03222_consen 381 LLVIIFGILII 391 (394)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.96 E-value=2.8e-26 Score=221.92 Aligned_cols=375 Identities=14% Similarity=0.108 Sum_probs=271.7
Q ss_pred cccCCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHh
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~ 114 (451)
.++++.+..++.+.+.+++||+|+|++|.+.++.|+..++++++++|.+..+|+.++.|...+.++. .++.+++|+.+
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g--~~~~tma~~~L 83 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIG--SSFDTITKDLL 83 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHc
Confidence 3567889999999999999999999999999999999999999999999999999999998765553 49999999999
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhc--CCCchhHHHHHHH
Q 013039 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSH--LPNFNAIAGVSLA 192 (451)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~~~l~~l~~~s~~ 192 (451)
|| .|+.+.+++..+..|+.+.+|+.-.++.+++.++. .+ .+.++..-.+++.++.-.+.+ .|..++..++-..
T Consensus 84 G~-~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~-~~---~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~ 158 (414)
T PRK10483 84 GK-GWNVVNGISIAFVLYILTYAYISASGSILHHTFAE-MS---LNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLG 158 (414)
T ss_pred Ch-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh-cC---CCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 97 46699999999999999999999999999999876 21 123444445555555444444 2445555555555
Q ss_pred HHHHHHHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCCchH
Q 013039 193 AAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRG 272 (451)
Q Consensus 193 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~~ 272 (451)
+++..+..++.... .+...+..... . ......+..++.++|++++||+.|+++|++.++++ +|++ +.+++
T Consensus 159 ~~i~~f~~~~~~l~---~~i~~~~L~~~-~-~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~---~d~~--kir~~ 228 (414)
T PRK10483 159 AKVITFFLTFGSLL---GHVQPATLFNV-A-ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYG---KDPK--TIVKC 228 (414)
T ss_pred HHHHHHHHHHHHHH---hhcCHHHHhcc-c-cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhC---cCHH--HHHHH
Confidence 55443332222221 12111111100 0 01123356789999999999999999999999983 3343 47799
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcc-----------Ccchh--HHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHH
Q 013039 273 VVVAYIVVALCYFPVALIGYWMFG-----------NKVED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDM 339 (451)
Q Consensus 273 ~~~~~~~~~~~Y~~~~~~gy~~fg-----------~~~~~--~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~ 339 (451)
+..+..+..++|++.-..+....+ ++.+. ..+.+..++.+...+..++..+++.+||--....++|.
T Consensus 229 I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~ 308 (414)
T PRK10483 229 LVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDY 308 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999986655554433 22211 11222233456678899999999999999999999999
Q ss_pred HHHHhhhccCCCchhHHHHHHHHHHHHHHHHHHHhccc-hhhhhhhhhhhhhhhhHHHHHHHHHHHHhcC-CCcch----
Q 013039 340 IETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPF-FGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP-RKYSL---- 413 (451)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~-~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~-~~~~~---- 413 (451)
+.+.++.+++.+ .|.....+.++++++++...|+ |-..+++.|.. ..++..++|+++..+.||+ +...+
T Consensus 309 l~D~~k~~~~~~----~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~G 383 (414)
T PRK10483 309 LADLFGFDDSAM----GRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRVWG 383 (414)
T ss_pred HHHHhCCCCccc----cceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCceecC
Confidence 999998664321 2344455788899999999998 88899999966 6788889999999999976 22221
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 013039 414 SWCINWICIVLGLCLMIL 431 (451)
Q Consensus 414 ~~~~~~~~~~~g~~~~v~ 431 (451)
.+.....++++|+...+.
T Consensus 384 g~~~l~~~~~~g~~~i~~ 401 (414)
T PRK10483 384 GKPMIVLILLFGVGNALV 401 (414)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 223335555555555544
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.95 E-value=5.3e-26 Score=219.69 Aligned_cols=376 Identities=15% Similarity=0.133 Sum_probs=266.9
Q ss_pred cCCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhcc
Q 013039 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGE 116 (451)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~ 116 (451)
+||.+...+.+.+.+++||+|+|++|.+.++.|+..+++++++++.+..+|+.++.|+..+.++. .++.+++|+.+|+
T Consensus 6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g--~~l~tma~~~LG~ 83 (415)
T PRK09664 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVG--SSFNTITKDLIGN 83 (415)
T ss_pred hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHcCh
Confidence 44457788999999999999999999999999999999999999999999999999998876654 4999999999997
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcC--CCchhHHHHHHHHH
Q 013039 117 KLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL--PNFNAIAGVSLAAA 194 (451)
Q Consensus 117 ~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--~~l~~l~~~s~~~~ 194 (451)
.|+.+.+++..+..|+.+.+|+.-.++.+++.++...+ .+.++....+++.++.-.+.+. |..++..++-..++
T Consensus 84 -~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~---~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ 159 (415)
T PRK09664 84 -TWNIISGITVAFVLYILTYAYISANGAIISETISMNLG---YHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLK 159 (415)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhcc---CCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 57799999999999999999999999999999875321 1233444445555554444443 34555555444444
Q ss_pred HHHHHHHHHHhhheeeeccCCCccccccccC-cccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCCchHH
Q 013039 195 VMSLSYSTIAWSASVRKGVQPDVAYGYKAKT-AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGV 273 (451)
Q Consensus 195 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~~~ 273 (451)
+..+...+... ..+-+.+..... +... ....+..++.++|++++||+.|.++|++.+.++ +|++| .++.+
T Consensus 160 ii~f~~~~~~l---~~~i~~~~L~~~-~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~---~d~~~--~~kaI 230 (415)
T PRK09664 160 IISFVIVFGSF---FFQVDYSILRDA-TSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYG---KRKDK--LIKSV 230 (415)
T ss_pred HHHHHHHHHHH---hhcccHHHHhcC-ccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhC---ccHHH--HHHHH
Confidence 43332222211 111111111100 0000 011134688899999999999999999999983 34434 55888
Q ss_pred HHHHHHHHHHHHHHHhh--hh---------hhccCcchh---HHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHH
Q 013039 274 VVAYIVVALCYFPVALI--GY---------WMFGNKVED---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDM 339 (451)
Q Consensus 274 ~~~~~~~~~~Y~~~~~~--gy---------~~fg~~~~~---~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~ 339 (451)
..+..+..++|.+.=.+ |- ...|++... ....+ .++.+...+..++..+++.+||--....++|.
T Consensus 231 l~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~-~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~ 309 (415)
T PRK09664 231 VFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGT-KQHGIIEFCLLVFSNLAVASSFFGVTLGLFDY 309 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888665333 31 122333322 11222 34467788999999999999999999999999
Q ss_pred HHHHhhhccCCCchhHHHHHHHHHHHHHHHHHHHhccc-hhhhhhhhhhhhhhhhHHHHHHHHHHHHhcC-CCcc----h
Q 013039 340 IETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPF-FGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP-RKYS----L 413 (451)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~-~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~-~~~~----~ 413 (451)
+.+.++.+++. ..|.....+.++++++++...|+ |-..+++.|.. .+++..++|+++..|.||+ .... .
T Consensus 310 l~D~~~~~~~~----~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~G 384 (415)
T PRK09664 310 LADLFKIDNSH----GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWG 384 (415)
T ss_pred HHHHhCCCCcc----ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeC
Confidence 99998765332 23444455788899999999998 88899999986 6788889999999999976 2211 2
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 013039 414 SWCINWICIVLGLCLMILSP 433 (451)
Q Consensus 414 ~~~~~~~~~~~g~~~~v~g~ 433 (451)
.+...+..+++|+++.+.-.
T Consensus 385 G~~~l~~~~~~g~~ii~~~~ 404 (415)
T PRK09664 385 GNLIPAIVILFGITVILCWF 404 (415)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666655433
No 12
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.95 E-value=2.6e-26 Score=226.41 Aligned_cols=344 Identities=15% Similarity=0.132 Sum_probs=260.3
Q ss_pred HHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhcccccchhhHH
Q 013039 46 AFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVP 125 (451)
Q Consensus 46 ~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~~~g~~~~~~ 125 (451)
++.++++++|+|++++|..+++.|...+++.+++.++++.++..++.|+..+.|+.+ ++.+++++.+||+.| ++..+
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~--~~~~~~~~~~G~~~g-~~~~~ 79 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGA--SFNTIAKDLLGKTGN-IIAGL 79 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHhCHHHH-HHHHH
Confidence 456789999999999999999999999999999999999999999999988887654 999999999998555 99999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHh
Q 013039 126 QQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAW 205 (451)
Q Consensus 126 ~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~v~~~~~~~ 205 (451)
..++..+..+.+|....++.+..+++..... ..++....+++.+++.++ ..++.+...+++.+.+...+..+++++
T Consensus 80 ~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~v~~~l-~~~G~~~~~~v~~i~~~~~l~~l~~~i 155 (381)
T TIGR00837 80 SLLFVLYILTYAYISGGGSILSRLIGEYFGF---PWSARAIVLIFTVLFGSF-VWLSTSAVDRITRVLIFGKIIAFALVF 155 (381)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988754322 123333333344444444 345778888888888776665444444
Q ss_pred hheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCCchHHHHHHHHHHHHHH
Q 013039 206 SASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYF 285 (451)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~Y~ 285 (451)
+....+.+.++..+. ...+.++.++..+++...++|.+|.+++++.+|+ +|+ +++.+|++..+..+++++|+
T Consensus 156 i~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~----~~~-~k~i~raii~g~~i~~~lY~ 227 (381)
T TIGR00837 156 SGLLPHVKGDLLLDV---ALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYY----DGN-VKKVKKSILIGSAIALVLYI 227 (381)
T ss_pred HHHHhhccHHHHhcC---ccccccHHHHHHHHHHHHHHHHcccccHHHHHHh----ccC-HHHHHHHHHHHHHHHHHHHH
Confidence 433333222221111 1112356789999999999999999999999999 555 44588999999999999999
Q ss_pred HHHhhhhhhccCcchh----------H---HhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHhhhccCCCc
Q 013039 286 PVALIGYWMFGNKVED----------N---ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSP 352 (451)
Q Consensus 286 ~~~~~gy~~fg~~~~~----------~---il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~ 352 (451)
++........+.+.-. . ...+.-++.+...++.++..+++.+|+.....+.+|.+.+.++++.+++
T Consensus 228 l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~~- 306 (381)
T TIGR00837 228 LWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSKK- 306 (381)
T ss_pred HHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-
Confidence 9877766665432211 1 1222122345678899999999999999999999999888887753322
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccchh-hhhhhhhhhhhhhhHHHHHHHHHHHHhcCC
Q 013039 353 TRLLRFVVRNLYVASTMFIGITFPFFG-GLLGFFGGFAFAPTTYFLPCIIWLAIYKPR 409 (451)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~la~~v~~~~-~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~ 409 (451)
.|.....+..+++.++|.+.|+.. ..++..| +...++.+++|++++++.||++
T Consensus 307 ---~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 307 ---GRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKKF 360 (381)
T ss_pred ---CCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 134556677788999999998855 8999999 8889999999999999988753
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.95 E-value=1.5e-25 Score=218.00 Aligned_cols=369 Identities=14% Similarity=0.166 Sum_probs=265.0
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhcccccc
Q 013039 41 KWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGL 120 (451)
Q Consensus 41 s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~~~g~ 120 (451)
+...+.+.+.+++||+|+|+||.+.+..|..++++++++++.+..++++++.|+..+.++ ..++.+++|+.+|+++ +
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~--~~~~~~~a~~~LG~~g-~ 80 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA--DTGLGTLAKRYLGRYG-Q 80 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCHHHHHHHHhChHH-H
Confidence 678899999999999999999999999999999999999999999999999997665443 3489999999999865 5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH
Q 013039 121 YIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSY 200 (451)
Q Consensus 121 ~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~v~~ 200 (451)
++..++.++..|..+.+|..-.++.+.+.++.+.+. +.+.....+.+.++.....+. +.+...+++.+-+...+..
T Consensus 81 ~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~---~i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L~~~~ii~ 156 (403)
T PRK15132 81 WLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI---SMSPTAGVLLFTLVAGGVVCV-GTSSVDLFNRFLFSAKIIF 156 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC---CCChHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888764422 123333334443333222222 3344444443333322222
Q ss_pred HHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCCchHHHHHHHHH
Q 013039 201 STIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVV 280 (451)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~ 280 (451)
.+......+.+.+.++... . +.+..-++.++|++.+||+.|+++|++.+.++ +|++ |.+|++..+..+.
T Consensus 157 ~~~~~~~l~p~~~~~~L~~----~--~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~---~~~~--~~~k~i~~Gs~i~ 225 (403)
T PRK15132 157 LVVMLALMMPHIHKVNLLT----L--PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMG---GNIR--KLRWVFIIGSAIP 225 (403)
T ss_pred HHHHHHHHHHhcCHHHHhc----C--CccccHHHHHHHHHHHHhhCCcccHHHHHHhC---cCHH--HHHHHHHHHHHHH
Confidence 2222222222211111110 0 11112489999999999999999999999983 2333 3679999999999
Q ss_pred HHHHHHHHhhhhhhccCcc----------hhHHhhC---CCChhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHhhhc
Q 013039 281 ALCYFPVALIGYWMFGNKV----------EDNILLS---LEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK 347 (451)
Q Consensus 281 ~~~Y~~~~~~gy~~fg~~~----------~~~il~~---~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~ 347 (451)
.++|+..-..+....+.+. .++.+.. ..+.++...++.++..+++.+||--....++|.+.+.++++
T Consensus 226 li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~ 305 (403)
T PRK15132 226 LVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR 305 (403)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999988777766554321 1122222 23446788899999999999999999999999999998764
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHhccc-hhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCC---Ccc--hhHHHHHHH
Q 013039 348 LNFSPTRLLRFVVRNLYVASTMFIGITFPF-FGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR---KYS--LSWCINWIC 421 (451)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~la~~v~~-~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~---~~~--~~~~~~~~~ 421 (451)
.+.+ .|.....+..+++++++...|+ |..+.++.|. ..+.+.+++|+++..|.|+++ +.+ ..+...+.+
T Consensus 306 ~~~~----~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v 380 (403)
T PRK15132 306 NTVG----GRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALV 380 (403)
T ss_pred cccc----CCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHH
Confidence 3321 2455667888999999999988 7888999886 578999999999999988754 222 134556667
Q ss_pred HHHHHHHHHHH
Q 013039 422 IVLGLCLMILS 432 (451)
Q Consensus 422 ~~~g~~~~v~g 432 (451)
+++|++..+.-
T Consensus 381 ~~~G~~~i~~~ 391 (403)
T PRK15132 381 FLCGIAVIGIQ 391 (403)
T ss_pred HHHHHHHHHHH
Confidence 77777666543
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.93 E-value=1.5e-23 Score=202.59 Aligned_cols=385 Identities=13% Similarity=0.087 Sum_probs=269.1
Q ss_pred HHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhcccccchhh
Q 013039 44 YSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIV 123 (451)
Q Consensus 44 ~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~~~g~~~~ 123 (451)
.....+.++.+|+|+|+||-.....|..++++++++++.+++++++.+.|.....++ +..++.+++++.+|+++| .+.
T Consensus 23 ~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~-~~~~i~~v~~~~lG~~g~-~i~ 100 (443)
T PRK13629 23 TWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN-PSGNITETVEEHFGKTGG-VVI 100 (443)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHcChhHH-HHH
Confidence 345899999999999999999999999999999999999999999999998664422 235999999999998766 999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Q 013039 124 VPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTI 203 (451)
Q Consensus 124 ~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~v~~~~~ 203 (451)
+++.++..|..+.+|...+.+.+++.+.+..+. .+.++....+++.+++...... +-+..-+++..-+...+...+.
T Consensus 101 ~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~--~~~~r~l~slifv~~l~~iv~~-G~~~v~kv~~~Lv~~~i~~l~~ 177 (443)
T PRK13629 101 TFLYFFAICPLLWIYGVTITNTFMTFWENQLGF--APLNRGFVALFLLLLMAFVIWF-GKDLMVKVMSYLVWPFIASLVL 177 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc--CCccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888766554321 1234444444444444333332 3344444444433333332322
Q ss_pred HhhheeeeccCCCccc-cccccCcc---cchhhHHHHhhhHhhhcccceeecccccccccCCC---CCC--CCCCchHHH
Q 013039 204 AWSASVRKGVQPDVAY-GYKAKTAA---GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPE---KPS--KGPMWRGVV 274 (451)
Q Consensus 204 ~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~---~p~--~~~~~~~~~ 274 (451)
.....+.+-+.++... +....+.. .....++.++|+++|||+.|+++|+.....|++.+ +++ ++|.++++.
T Consensus 178 l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~ 257 (443)
T PRK13629 178 ISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIIS 257 (443)
T ss_pred HHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 2233232222222110 00000001 11245899999999999999999999999765532 233 455779999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCcch-------hHH----hhCCCC---h-----hHHHHHHHHHHHHHHHhhhcccccc
Q 013039 275 VAYIVVALCYFPVALIGYWMFGNKVE-------DNI----LLSLEK---P-----TWLIVMANFFVVVHVIGSYQIYAMP 335 (451)
Q Consensus 275 ~~~~~~~~~Y~~~~~~gy~~fg~~~~-------~~i----l~~~~~---~-----~~~~~~~~~~~~i~~~~s~pl~~~~ 335 (451)
.+..+..++|+..-+.+....+++.. .++ ...+++ . .....+..++..+++.+||--....
T Consensus 258 ~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LG 337 (443)
T PRK13629 258 RASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLG 337 (443)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888777764321 121 122332 1 4577888999999999999999999
Q ss_pred HHHHHHHHhhh---c--cCCCchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCC
Q 013039 336 VFDMIETLLVK---K--LNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRK 410 (451)
Q Consensus 336 ~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~~ 410 (451)
++|.+...+.+ + .++...+..+.....++.+.++.++..-|++-.+++-.|+-..+.+.|++|...-.|...-++
T Consensus 338 l~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~ 417 (443)
T PRK13629 338 TLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAK 417 (443)
T ss_pred HHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHH
Confidence 99999988842 1 122344556677777888899999999999999999888888899999999888777654333
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhH
Q 013039 411 YSLSWCINWICIVLGLCLMILSPI 434 (451)
Q Consensus 411 ~~~~~~~~~~~~~~g~~~~v~g~~ 434 (451)
.|.+ ..++.+++.|++......|
T Consensus 418 yr~~-~~n~fv~~~Gl~~i~~~~~ 440 (443)
T PRK13629 418 YRGR-LDNVFVTVIGLLTILNIVY 440 (443)
T ss_pred hCCC-chhHHHHHHHHHHHHHHHH
Confidence 3222 3467777888776544433
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.91 E-value=1.5e-22 Score=197.52 Aligned_cols=357 Identities=11% Similarity=0.067 Sum_probs=258.3
Q ss_pred HHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhcccccchh
Q 013039 43 WYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYI 122 (451)
Q Consensus 43 ~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~~~g~~~ 122 (451)
....+.+.++++|+|+|++|...++.||...++..++...+.+++.+++.|.....+. ...++.|++++.|||++| .+
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~-p~~~i~~~~~~~fGk~~G-~i 83 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKN-PCEDITEVVEEHFGKNWG-IL 83 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHcCHHHH-HH
Confidence 4567889999999999999999999999988888999999999999999997443332 134999999999998777 99
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHH
Q 013039 123 VVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYST 202 (451)
Q Consensus 123 ~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~v~~~~ 202 (451)
..++.++..+..+.+|....++.+.+.+......+ ...+....+..++.+-.....+.+...+++.+-+...+..++
T Consensus 84 i~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~---~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~ 160 (397)
T TIGR00814 84 ITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTA---PPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILV 160 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887654221 112322222222332333445788888888777754444444
Q ss_pred HHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCC--CCCCchHHHHHHHHH
Q 013039 203 IAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS--KGPMWRGVVVAYIVV 280 (451)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~--~~~~~~~~~~~~~~~ 280 (451)
.+......+.+.++.... ......+.++..+++..+|||.+|+++|+...+.|++.+||+ ++|.+|+...+..+.
T Consensus 161 ~l~~~lip~~~~~~L~~~---p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~ 237 (397)
T TIGR00814 161 LLSLYLIPHWNGANLTTF---PSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLIL 237 (397)
T ss_pred HHHHHHHHHcCHHHHhcC---CcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHH
Confidence 333333333222222110 011234678999999999999999999999844443324333 445679999999999
Q ss_pred HHHHHHHHhhhhhhccCcchh-------HHhh---CCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHhhh----
Q 013039 281 ALCYFPVALIGYWMFGNKVED-------NILL---SLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVK---- 346 (451)
Q Consensus 281 ~~~Y~~~~~~gy~~fg~~~~~-------~il~---~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~---- 346 (451)
.++|+..-+.+....+++... +.+. |-.+.+....+..++..+++.+||--+...++|.+.+.+.+
T Consensus 238 ~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~ 317 (397)
T TIGR00814 238 VATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKM 317 (397)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 999999988888877643321 1122 22234567788899999999999999999999999998832
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhc
Q 013039 347 KLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYK 407 (451)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~ 407 (451)
+.++...+........+..+.++.++..-|+.-.+++-.|+-..+.+.|++|...-.|...
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~ 378 (397)
T TIGR00814 318 KGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPA 378 (397)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHH
Confidence 1122334455566667778889999999999999999778888899999999888777543
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.84 E-value=1e-17 Score=168.37 Aligned_cols=353 Identities=9% Similarity=0.032 Sum_probs=211.7
Q ss_pred ccCCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhc
Q 013039 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (451)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G 115 (451)
++|+.+.++.+...+++++|+|++.+|..+++.|. .+++.+++.+++.......+.|...+.|.++ ...+.+++.+|
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~G--G~y~y~~~~~G 80 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSG--GMGGYAEYAFG 80 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC--chHHHHHHHcC
Confidence 46789999999999999999999999988888776 4677788888888989999999888788766 78899999999
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHH--HHHHHhcCCCchhHHHHHHHH
Q 013039 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAS--VHFVLSHLPNFNAIAGVSLAA 193 (451)
Q Consensus 116 ~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~--i~~pl~~~~~l~~l~~~s~~~ 193 (451)
|++| ++..+..++.......++.....+++..+++.. .+.....++... ..+-....++.+...+++.+.
T Consensus 81 ~~~g-f~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~-------~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~ 152 (438)
T PRK10655 81 KSGN-FMANYTYGVSLLIANVAIAISAVGYGTELFGAT-------LSPVQICLATIGVLWLCTVANFGGARITGQISSVT 152 (438)
T ss_pred cchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------cchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9888 888888777666655555555556665554311 111111111111 112222334666666666655
Q ss_pred HHHHHHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCCchHH
Q 013039 194 AVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGV 273 (451)
Q Consensus 194 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~~~ 273 (451)
+...+..++++.+........++.+..+.+. ....+.++..++....|+|.|.+.+....+|+ |||+|+ ++|++
T Consensus 153 ~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r~-iPrAi 226 (438)
T PRK10655 153 VWGVIIPVVGLSIIGWFWFSPSLYVAAWNPH-HLPFFSAVGSSIAMTLWAFLGLESACANSDAV----ENPERN-VPIAV 226 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccccCCcCcc-CCchHHHHHHHHHHHHHHHhhhhhhhhhHHHh----hCcccc-ccHHH
Confidence 5443332222222211111111211111111 11123567788889999999999999999999 999887 99999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCc-c---hh---HHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHhhh
Q 013039 274 VVAYIVVALCYFPVALIGYWMFGNK-V---ED---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVK 346 (451)
Q Consensus 274 ~~~~~~~~~~Y~~~~~~gy~~fg~~-~---~~---~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~ 346 (451)
..+..++.++|++.........+++ . ++ ....+.-. ++...+..+...++.+.+.........+.+....++
T Consensus 227 ~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g-~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~d 305 (438)
T PRK10655 227 LGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFN-PTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADE 305 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999998765544333221 0 01 11112111 233344455555555555544444334443333222
Q ss_pred --------ccCCCchhHHHHHHHHHHHHHHHHHHHhcc----chhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCC
Q 013039 347 --------KLNFSPTRLLRFVVRNLYVASTMFIGITFP----FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR 409 (451)
Q Consensus 347 --------~~~~~~~~~~~~~~~~~~~~~~~~la~~v~----~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~ 409 (451)
+.+ +.+.+.+.+.....+.....+....+ .++.+.++.+ ....+.|.++.+.+++.|+++
T Consensus 306 g~lP~~~~~v~-~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~--~~~~i~y~~~~~~~~~lr~~~ 377 (438)
T PRK10655 306 GYFPKIFSRVT-KVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAV--VTNIIPYILSMAALVIIQKVA 377 (438)
T ss_pred CchhHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhC
Confidence 112 22344444443333222222211123 3555555533 344688899988888777654
No 17
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.82 E-value=1.6e-17 Score=166.47 Aligned_cols=355 Identities=12% Similarity=0.086 Sum_probs=211.4
Q ss_pred cccCCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHh
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~ 114 (451)
+++|+.+.++.+...+++++|+|++.+|...++.|.. .+...++.++........+.|...+.|..+ ...+.+++ +
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~G--G~y~y~~~-~ 77 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQG--GPIAYAGE-I 77 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHH-H
Confidence 4578999999999999999999999999998887754 566677778888889999999998898876 77788888 8
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 013039 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (451)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 194 (451)
||++| +...+..+........++.....+++..+++... .......+. +..+..+-+...++.+....++.+..
T Consensus 78 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~----~~~~~~~~~-~~i~~~~~~ln~~gvk~~~~i~~i~~ 151 (435)
T PRK10435 78 SPAFG-FQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN----DPIPAGIAC-IAIVWVFTFVNMLGGTWVSRLTTIGL 151 (435)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC----ChHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99888 8888877765555555565666666665554221 001111111 11111122233456666666666555
Q ss_pred HHHHHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCCchHHH
Q 013039 195 VMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274 (451)
Q Consensus 195 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~~~~ 274 (451)
...+..++..+.....+...++...++.+ +.+.++.++..++....|+|.|.+.+....+|+ |||+|+ ++|++.
T Consensus 152 ~~~li~~~~~~i~g~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~----knP~r~-iPrAi~ 225 (435)
T PRK10435 152 VLVLIPVVGTAIVGWHWFDAATYAANWNT-SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMV----KNPKRT-VPLATM 225 (435)
T ss_pred HHHHHHHHHHHHHHHHHcCHHhhcccccC-CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHh----hCcccc-ccHHHH
Confidence 54332222222111111111111112211 113456789999999999999999999999999 999876 999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCcc----hh---HHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHhhh-
Q 013039 275 VAYIVVALCYFPVALIGYWMFGNKV----ED---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVK- 346 (451)
Q Consensus 275 ~~~~~~~~~Y~~~~~~gy~~fg~~~----~~---~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~- 346 (451)
.+...+.++|++..+......+.+. .+ ....+.. .++...+..++..+.++.+.-...+...+...+..++
T Consensus 226 ~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~-g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG 304 (435)
T PRK10435 226 LGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTIL-GNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDG 304 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999998876554443111 11 1222221 2344555555556666655533333222222222221
Q ss_pred -------ccCCCchhHHHHHHHHHHHHH--HHHHHHhc-------cchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCC
Q 013039 347 -------KLNFSPTRLLRFVVRNLYVAS--TMFIGITF-------PFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR 409 (451)
Q Consensus 347 -------~~~~~~~~~~~~~~~~~~~~~--~~~la~~v-------~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~ 409 (451)
+.+ +.+.+.+.+.....+.. ..++.... ..++.+.++.+ ....+.|++.++.++|.++++
T Consensus 305 ~lP~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~l~~y~~~~~~~ir~~~~~ 380 (435)
T PRK10435 305 NFPKVYGEVD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAV--LLTMLPYFYSCVDLIRFEGVN 380 (435)
T ss_pred CccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCc
Confidence 112 22344444333222221 11111111 12455555533 345677888888888776544
No 18
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.82 E-value=5.5e-17 Score=163.25 Aligned_cols=354 Identities=15% Similarity=0.105 Sum_probs=205.9
Q ss_pred cccCCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHh
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~ 114 (451)
+++|+.+.++.+...+++++|+|++.+|....+.|.. .+...++.++........+.|...+.|.++ ...+.+++.+
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P~aG--G~y~~~~~~~ 81 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLDPSPG--GSYAYARRCF 81 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHHHc
Confidence 3578899999999999999999999999887777643 455566677777788889999988888876 7778899999
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHH--HHHHhcCCCchhHHHHHHH
Q 013039 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASV--HFVLSHLPNFNAIAGVSLA 192 (451)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i--~~pl~~~~~l~~l~~~s~~ 192 (451)
||++| ++..+..++.......+......++...+.+... ++....++...+ .+-..-.+..|...+++.+
T Consensus 82 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i 153 (445)
T PRK10644 82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-------DPLVLTITCVVVLWIFVLLNIVGPKMITRVQAV 153 (445)
T ss_pred CchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-------CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 99888 7778777766555555555445555554443211 111111111211 2222233466777777766
Q ss_pred HHHHHHHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCCchH
Q 013039 193 AAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRG 272 (451)
Q Consensus 193 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~~ 272 (451)
.....+..+++++...+.....++....++ .....++..+..++....|+|.|.+......+|+ |||+|+ .+|+
T Consensus 154 ~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r~-iPra 227 (445)
T PRK10644 154 ATVLALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKRN-VPIA 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhccCCcc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHh----hCcccc-hhHH
Confidence 665444322222221111111111111111 1112344567778889999999999999999999 999887 9999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcc----hhH---HhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHhh
Q 013039 273 VVVAYIVVALCYFPVALIGYWMFGNKV----EDN---ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLV 345 (451)
Q Consensus 273 ~~~~~~~~~~~Y~~~~~~gy~~fg~~~----~~~---il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~ 345 (451)
+..+..+++++|++..+......+++. .++ +..... +++...+..+...++.+.+.-.......+......+
T Consensus 228 i~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~-g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ar 306 (445)
T PRK10644 228 TIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAAD 306 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998877544433211 111 111111 122333333333444433322223333343333332
Q ss_pred h--------ccCCCchhHHHHHHHHHHHHHHHHHHHhccc----hhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCC
Q 013039 346 K--------KLNFSPTRLLRFVVRNLYVASTMFIGITFPF----FGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR 409 (451)
Q Consensus 346 ~--------~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~----~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~ 409 (451)
+ +.++ .+.+.+.+.....+.....+....++ ++.+.++. .....+.|++|.+..++.++++
T Consensus 307 dg~lP~~~~~v~~-~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~--~~~~li~y~~~~~~~~~l~~~~ 379 (445)
T PRK10644 307 DGLFPPIFARVNK-AGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVS--VIFTLVPYLYTCAALLLLGHGH 379 (445)
T ss_pred CCCccHHHHhhCc-CCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 2 1122 23444444333333222222222343 33344432 2345688899999888776654
No 19
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.80 E-value=2.3e-16 Score=159.81 Aligned_cols=357 Identities=11% Similarity=0.082 Sum_probs=217.1
Q ss_pred ccCCChHHHHHHHHHhhhhccccccHHHHHHhhChh-HHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CccCCHHHHHHHH
Q 013039 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWG-PGVAILILSWIITLYTLWQMVEMHEMVPG-KRFDRYHELGQHA 113 (451)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~-~gii~~i~~~~~~~~s~~~l~~~~~~~~~-~~~~sy~~~~~~~ 113 (451)
++|+.|.+++.+..+++++|+|++.+|....+.|-. ..++..++.+++.......+.|...+.|+ .+ ...++.++.
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG--G~y~y~~~~ 82 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG--GIYAYAREG 82 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--ChhhhHHhH
Confidence 467899999999999999999999999886655433 34556778888888889999999988888 65 677889999
Q ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHH-HHHHHHHHHhcCCCchhHHHHHHH
Q 013039 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIM-IFASVHFVLSHLPNFNAIAGVSLA 192 (451)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~ 192 (451)
+||++| ++..+..+........++.....+++..+++..... . ....+.. +..++..-....++.+...+++.+
T Consensus 83 ~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~--~--~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~ 157 (473)
T TIGR00905 83 FGPYIG-FMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSG--N--PVPSILGASVLLWVFTFLVLRGVRQAAFINTI 157 (473)
T ss_pred cccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--C--cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999888 888888877666666667666666776666532111 0 1111111 111222223345678888887777
Q ss_pred HHHHHHHHHHHHhhheeeeccCCCccccccc--c-CcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCC
Q 013039 193 AAVMSLSYSTIAWSASVRKGVQPDVAYGYKA--K-TAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM 269 (451)
Q Consensus 193 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~ 269 (451)
.....+..++++++..+.....++...+..+ . .....+..+..++....|+|.|.+......+|+ || +|+ .
T Consensus 158 ~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~-~r~-i 231 (473)
T TIGR00905 158 TTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRA----KN-KSD-V 231 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHH----hc-ccc-c
Confidence 6665443332222222111111111111100 0 112245678888999999999999999999999 78 554 9
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhccCcc----hh----HHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHH
Q 013039 270 WRGVVVAYIVVALCYFPVALIGYWMFGNKV----ED----NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIE 341 (451)
Q Consensus 270 ~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~----~~----~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~ 341 (451)
+|++..+..++.++|++.........+.+. .+ .+..... +.+...+..++..++.+.+.-..+....+.+.
T Consensus 232 Prai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~-g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~ 310 (473)
T TIGR00905 232 GKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIV-GKWGAVLISLGLIISVLGSLLSWTMLAAEVPF 310 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988776544433211 11 1111111 12344455555666666655555555555544
Q ss_pred HHhhhc--------cCCCchhHHHHHHHHHHHHHHHHHHHh--ccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCC
Q 013039 342 TLLVKK--------LNFSPTRLLRFVVRNLYVASTMFIGIT--FPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR 409 (451)
Q Consensus 342 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~la~~--v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~ 409 (451)
.+.+++ .|++ +.+.+.......+.....+... ..+++.+.++.+ ....+.|.++.+..++.++++
T Consensus 311 amardg~lP~~~~~v~~~-~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~--~~~~i~y~~~~~a~~~lr~~~ 385 (473)
T TIGR00905 311 SAAKDGLFPKIFGRVNKN-GAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAV--VMILVPYLLSAAYLLKLAKVG 385 (473)
T ss_pred HHHhCCChhHHHHhhCcc-CCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcC
Confidence 443321 1222 3444444333332222222222 234566666543 345688888888888877653
No 20
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.80 E-value=1.2e-16 Score=163.89 Aligned_cols=359 Identities=12% Similarity=0.052 Sum_probs=230.1
Q ss_pred cccCCChHHHHHHHHHhhhhccccccHHHHH--HhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAM--AQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~--~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~ 112 (451)
+.+|+.+.++.+...++.++|+|++.+|... ...|.. .++.+++.++.+...+..+.|.+.+.|..+ +.....++
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sG--g~Y~y~~~ 101 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAG--SAYLYSYV 101 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--cceeeHHH
Confidence 4678999999999999999999999999643 346754 556678888888999999999998888876 77778889
Q ss_pred HhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcC--------CCCCc-chhhHHHHHHHHHHHHhcCCCc
Q 013039 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKE--------PCKEI-KLSYFIMIFASVHFVLSHLPNF 183 (451)
Q Consensus 113 ~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~--------~~~~~-~~~~~~~i~~~i~~pl~~~~~l 183 (451)
.+|+.+| +++.+..++.......+.....++++..++....+. ..... .......+..++.+-+...++.
T Consensus 102 ~~G~~~g-fi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gi 180 (557)
T TIGR00906 102 TVGELWA-FITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGV 180 (557)
T ss_pred HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhch
Confidence 9999888 888888887776666666666777777666532110 00001 0111111222222223344678
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhheeeeccCCCccccc---cccCcccchhhHHHHhhhHhhhcccceeecccccccccC
Q 013039 184 NAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGY---KAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPST 260 (451)
Q Consensus 184 ~~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~ 260 (451)
+..++++.+.....+..++++++....+...++.+... .+...+.++.++..+....+|+|.|.+.+....+|+
T Consensus 181 k~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~--- 257 (557)
T TIGR00906 181 KESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEV--- 257 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhc---
Confidence 88888887777765554444443333332222211100 001123456789999999999999999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhccCc---chh---HHhhCCCChhHHHHHHHHHHHHHHHhhhccccc
Q 013039 261 PEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK---VED---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAM 334 (451)
Q Consensus 261 ~~~p~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~---~~~---~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~ 334 (451)
|||+|. +++++..++.+++++|.++...-....+.+ ..+ ....... .++...+..++..+.++.+....++
T Consensus 258 -knP~r~-iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g-~~~~~~ii~~~~~~~~~~sl~~~~~ 334 (557)
T TIGR00906 258 -KNPQRA-IPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVG-WGPAKYIVAVGALCGMSTSLLGGMF 334 (557)
T ss_pred -cCcccc-ccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 999999999999999998876543332211 111 2223222 2456666777777777777666666
Q ss_pred cHHHHHHHHhhhcc--------CCCchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHh
Q 013039 335 PVFDMIETLLVKKL--------NFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIY 406 (451)
Q Consensus 335 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~ 406 (451)
...+.+..+.+++. +++.+.+.+....... .+.+++.. .+++.+.++.. .+..+.|.++++..+..|
T Consensus 335 ~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~i--v~~il~~~-~~~~~l~~l~s--ig~ll~y~lv~~~~l~lR 409 (557)
T TIGR00906 335 PLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGA--IAALMAFL-FDLKALVDLLS--IGTLLAYSLVAACVLILR 409 (557)
T ss_pred HHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHH--HHHHHHHH-cCHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence 66666666554321 2222334443333222 22333333 34666666543 345688888888777776
Q ss_pred cC
Q 013039 407 KP 408 (451)
Q Consensus 407 ~~ 408 (451)
++
T Consensus 410 ~~ 411 (557)
T TIGR00906 410 YQ 411 (557)
T ss_pred cc
Confidence 43
No 21
>PRK15049 L-asparagine permease; Provisional
Probab=99.80 E-value=1.1e-16 Score=162.60 Aligned_cols=353 Identities=11% Similarity=0.107 Sum_probs=213.4
Q ss_pred ccCCChHHHHHHHHHhhhhccccccHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHh
Q 013039 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPY-AMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (451)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~-a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~ 114 (451)
.+|+.+.++..+..++.+||+|++..|. +.+.+|- .+++..++.+++....+..+.|.+.+.|..+ +....+++.+
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aG--g~y~y~~~~~ 102 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSG--SFVSYAREFL 102 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHh
Confidence 5788999999999999999999999986 6777775 4677788889999999999999998889877 8999999999
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 013039 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (451)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 194 (451)
||++| +++.+..++.............+.+...+ +.. .......+..++.++.. +.-.++.|....+.....
T Consensus 103 G~~~g-f~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~-----~~~~~~~~~~~~~~l~~-~iN~~gvk~~~~i~~~~~ 174 (499)
T PRK15049 103 GEKAA-YVAGWMYFINWAMTGIVDITAVALYMHYW-GAF-----GGVPQWVFALAALTIVG-TMNMIGVKWFAEMEFWFA 174 (499)
T ss_pred CcHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC-----CCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 99888 88888887765444333333334333221 101 01122222222222222 222335555555554444
Q ss_pred HHHHHHHHHHhh---heeeeccCCC-ccccc-----cccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCC
Q 013039 195 VMSLSYSTIAWS---ASVRKGVQPD-VAYGY-----KAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (451)
Q Consensus 195 ~~~v~~~~~~~~---~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~ 265 (451)
...+..++.+++ .....+...+ ...++ +....+.++.++..++...+|+|.|.+.+....+|+ |||+
T Consensus 175 ~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~----knP~ 250 (499)
T PRK15049 175 LIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC----KDPQ 250 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh----cChh
Confidence 322222111111 1111111110 00011 011123455566777788999999999999999999 9998
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhhhhhhccCc-c---hh---HHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHH
Q 013039 266 KGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK-V---ED---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFD 338 (451)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~-~---~~---~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~ 338 (451)
|. ++|++..++..+.++|+..........+.+ . .+ .+..... .++...+..+..+++.+.+..-..+...+
T Consensus 251 r~-iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g-~~~~~~ii~~~ilia~~ss~ns~~~~~sR 328 (499)
T PRK15049 251 TM-VPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLG-VPYIGSIMNIVVLTAALSSLNSGLYCTGR 328 (499)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 999999999999999988766544433311 1 11 1222222 23455666777777777777666666666
Q ss_pred HHHHHhhhcc--------CCCchhHHHHHHHHHHH-HHHHHHHHhcc--chhhhhhhhhhhhhhhhHHHHHHHHHHHHhc
Q 013039 339 MIETLLVKKL--------NFSPTRLLRFVVRNLYV-ASTMFIGITFP--FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYK 407 (451)
Q Consensus 339 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~la~~v~--~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~ 407 (451)
.+..+.+++. + +.+.+.+.+.....+ ++..++....+ .++.+.++.+ ....+.|++|.+.+++.||
T Consensus 329 ~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~--~~~li~y~~~~~~~l~~R~ 405 (499)
T PRK15049 329 ILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS--LGIIASWAFIIVCQMRLRK 405 (499)
T ss_pred HHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 6666554321 2 233444444333222 22222222222 2555566544 4567899999999998875
Q ss_pred C
Q 013039 408 P 408 (451)
Q Consensus 408 ~ 408 (451)
+
T Consensus 406 ~ 406 (499)
T PRK15049 406 A 406 (499)
T ss_pred h
Confidence 3
No 22
>PRK10249 phenylalanine transporter; Provisional
Probab=99.79 E-value=1.8e-16 Score=159.86 Aligned_cols=351 Identities=14% Similarity=0.116 Sum_probs=213.6
Q ss_pred cccCCChHHHHHHHHHhhhhccccccHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPY-AMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~ 113 (451)
+.+|+.+.++..+..++.++|+|++..|. +.+++|. ..++..++.+++....+..+.|...+.|..+ +..+++++.
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~G--g~~~y~~~~ 94 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSG--SFAHFAYKY 94 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Confidence 45788999999999999999999999985 5666675 4677788899999999999999999888877 889999999
Q ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 013039 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (451)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 193 (451)
+|+.+| ++..+..++.......+.....+.++..+.+ +.....+..++..+. -..-.++.+..+++....
T Consensus 95 ~g~~~g-f~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~l~-~~lN~~gv~~~~~i~~~~ 164 (458)
T PRK10249 95 WGPFAG-FLSGWNYWVMFVLVGMAELTAAGIYMQYWFP--------DVPTWIWAAAFFIII-NAVNLVNVRLYGETEFWF 164 (458)
T ss_pred hChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------cCcHHHHHHHHHHHH-HHHHHhcchhhhhHHHHH
Confidence 999888 8888888877665555555555555554432 111222222222222 222234565555554433
Q ss_pred HHHHHHHHHHHh---hheeeecc-C--CCcccccc-ccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCC
Q 013039 194 AVMSLSYSTIAW---SASVRKGV-Q--PDVAYGYK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK 266 (451)
Q Consensus 194 ~~~~v~~~~~~~---~~~~~~~~-~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~ 266 (451)
....+..++.++ ......+. . .+.+..++ ....+.++.++..++....|+|.|.+.+....+|+ |||+|
T Consensus 165 ~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----~~P~k 240 (458)
T PRK10249 165 ALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEA----RDPEK 240 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cCHhh
Confidence 322221111111 11111111 1 11111111 11124567889999999999999999999999999 99988
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhccCcc----hh---HHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHH
Q 013039 267 GPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV----ED---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDM 339 (451)
Q Consensus 267 ~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~----~~---~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~ 339 (451)
+ ++|++..+...+.++|.+.........+++. .+ .+..+.. .++...+..++.++..+.+..-..+...+.
T Consensus 241 ~-iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~ 318 (458)
T PRK10249 241 S-IPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLD-SNVVASALNFVILVASLSVYNSGVYSNSRM 318 (458)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 9999999999999999876554443333211 11 1122222 234445555666666666665555555555
Q ss_pred HHHHhhhcc--------CCCchhHHHHHHHHHHHH-HHHHHHHhcc--chhhhhhhhhhhhhhhhHHHHHHHHHHHHhc
Q 013039 340 IETLLVKKL--------NFSPTRLLRFVVRNLYVA-STMFIGITFP--FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYK 407 (451)
Q Consensus 340 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~la~~v~--~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~ 407 (451)
+....+++. + +.+.+.+.+.....+. +..++....+ .++.+.++.+ ....+.|++|.+.+++.+|
T Consensus 319 l~a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 319 LFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVV--ATLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHHHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 555443221 2 2233444443332222 2222222222 2444555433 3456899999999998774
No 23
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.79 E-value=1.3e-16 Score=161.61 Aligned_cols=353 Identities=10% Similarity=0.095 Sum_probs=205.0
Q ss_pred cccCCChHHHHHHHHHhhhhccccccHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~ 113 (451)
+.+|+.+.++.....++.++|+|++..|.. .+.+|-...++..++.+++.......+.|.+.+.|.++ .+...+++.
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aG--G~y~y~~~~ 88 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETG--AFHVYAARY 88 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHh
Confidence 357889999999999999999999999865 56777544566688888889999999999998898877 888999999
Q ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 013039 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (451)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 193 (451)
+|+++| ++..+..++.....+.......+..+..+.+ ......+.+++.++.. +...++.+...+++...
T Consensus 89 ~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p--------~~~~~~~~~~~~~~~~-~in~~gvk~~~~~~~~~ 158 (471)
T PRK11387 89 LGPATG-YTVAWLYWLTWTVALGSSLTAAGFCMQYWFP--------QVPVWPWCLLFCALIF-GLNVVSTRFFAEGEFWF 158 (471)
T ss_pred cChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------cCcHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHH
Confidence 999888 8888888776655554444444433332221 1111222222222222 22234555555444333
Q ss_pred HHHHHHHHHHHhhhe---e----e--eccCCCccccccccC-cccchhhHHHHhhhHhhhcccceeecccccccccCCCC
Q 013039 194 AVMSLSYSTIAWSAS---V----R--KGVQPDVAYGYKAKT-AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEK 263 (451)
Q Consensus 194 ~~~~v~~~~~~~~~~---~----~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~ 263 (451)
....+..++.+++.. . . .+........+.... .+.+..++..++....|+|.|.+.+....+|+ ||
T Consensus 159 ~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----kn 234 (471)
T PRK11387 159 SLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGET----EN 234 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cC
Confidence 322222111111110 0 0 000000000111111 12334568888888999999999999999999 99
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHhhhhhhccCc-c---hh---HHhhCCCChhHHHHHHHHHHHHHHHhhhccccccH
Q 013039 264 PSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK-V---ED---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPV 336 (451)
Q Consensus 264 p~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~-~---~~---~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~ 336 (451)
|+|+ +++++..+...+.++|++.........+.+ . .+ .+..+.. .++...+..++.+++.+.+.--.++..
T Consensus 235 P~r~-iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g-~~~~~~ii~~~~~~s~~~~~~~~~~~~ 312 (471)
T PRK11387 235 PAKV-IPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVG-IPYAADIFNFVILTAILSAANSGLYAS 312 (471)
T ss_pred hhhH-HHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9887 999999999999999998876544444321 1 11 2223332 234555666666667666655555555
Q ss_pred HHHHHHHhhhcc--------CCCchhHHHHHHHHHHHHHHHHHHHhccc---hhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 013039 337 FDMIETLLVKKL--------NFSPTRLLRFVVRNLYVASTMFIGITFPF---FGGLLGFFGGFAFAPTTYFLPCIIWLAI 405 (451)
Q Consensus 337 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~la~~v~~---~~~i~~~~G~~~~~~~~~i~P~l~~l~~ 405 (451)
.+.+..+.+++. + +++.+.+.++.........++....+. +..+.++.+ ....+.|+++.+.+++.
T Consensus 313 sR~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~--~~~li~y~~~~~~~i~l 389 (471)
T PRK11387 313 GRMLWSLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISG--FAVVAVWLSICASHFMF 389 (471)
T ss_pred hHHHHHHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 555555543321 2 223344443322222211122211221 222233322 23457788888888776
Q ss_pred hcC
Q 013039 406 YKP 408 (451)
Q Consensus 406 ~~~ 408 (451)
+++
T Consensus 390 r~~ 392 (471)
T PRK11387 390 RRR 392 (471)
T ss_pred HHH
Confidence 654
No 24
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.79 E-value=2.1e-17 Score=160.20 Aligned_cols=361 Identities=14% Similarity=0.163 Sum_probs=237.2
Q ss_pred ccccCCChHHHHHHHHHhhhhccccccHHHH-HHhhC-hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHH
Q 013039 34 ITSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLG-WGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQ 111 (451)
Q Consensus 34 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G-~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~ 111 (451)
.+.+|+.+.+.++..++++++|+|++..|.. .+++| ..++.+..+++++++...+.+..|.....|..+ .+.....
T Consensus 8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksG--gd~ayi~ 85 (479)
T KOG1287|consen 8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSG--GDYAYIS 85 (479)
T ss_pred ccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCC--cchhhHH
Confidence 3568899999999999999999999999976 44554 445556688899999999999999887766665 6667788
Q ss_pred HHhcccccchhhHHHHHHHHH-HHHHHHHHHhhhh-HHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcC--CCchhHH
Q 013039 112 HAFGEKLGLYIVVPQQLIVEV-GVCIVYMVTGGKS-LHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL--PNFNAIA 187 (451)
Q Consensus 112 ~~~G~~~g~~~~~~~~~~~~~-g~~~~y~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--~~l~~l~ 187 (451)
++||+.++ +...+.-++... ..+..+...++++ +...++ . |. ..+...-.+..+++..+.+. .+++.-.
T Consensus 86 ~afg~~~a-F~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~----c~-~p~~~~~lla~~~l~~lt~~n~~~V~~a~ 158 (479)
T KOG1287|consen 86 EAFGPFPA-FLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-L----CD-VPRVASKLLAAALLVLLTLINSFSVKWAT 158 (479)
T ss_pred HHhccchh-HHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-C----CC-CchHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 99999888 444444444444 4447777778777 444444 1 22 22222223333333333332 2455555
Q ss_pred HHHHHHHHHHHHHHHHHhhheee---eccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCC
Q 013039 188 GVSLAAAVMSLSYSTIAWSASVR---KGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKP 264 (451)
Q Consensus 188 ~~s~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p 264 (451)
+++.+-..+-+..+.++++..++ .+..++.+.+. ......+..++..++-...|||.|.+.+-.+.+|+ |||
T Consensus 159 ~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~-f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEi----knP 233 (479)
T KOG1287|consen 159 RVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSE-FEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEI----KNP 233 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhchheeEecccccccccc-cccCcCchHHHHHHHHHhhhcccCchhhccchHhh----cCc
Confidence 66666666555555544444332 33333333221 12234566779999999999999999999999999 999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhhhhhccCc--chh-HHhhCCC---ChhHHHHHHHHHHHHHHHhhhccccccHHH
Q 013039 265 SKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK--VED-NILLSLE---KPTWLIVMANFFVVVHVIGSYQIYAMPVFD 338 (451)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~--~~~-~il~~~~---~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~ 338 (451)
+|. +++++..++.+++++|+++-+..+.....+ ..+ .+...+. -+++. ....+.+.++.+.+.-..++...+
T Consensus 234 ~kt-LP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR 311 (479)
T KOG1287|consen 234 RRT-LPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSR 311 (479)
T ss_pred ccc-chHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHH
Confidence 887 999999999999999999988877765321 111 1111121 12333 667778888888888777776666
Q ss_pred HHHHHhhhcc--------CCCchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCC
Q 013039 339 MIETLLVKKL--------NFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRK 410 (451)
Q Consensus 339 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~~ 410 (451)
.+....++.. +.+..++...+ +......++.....|+..+++..+-.........+-+++++|.+|++.
T Consensus 312 ~~~~~areG~LP~~~s~i~~~~~TP~~al---lf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~ 388 (479)
T KOG1287|consen 312 LFYAGAREGHLPAFFSMISVRRFTPRPAL---LFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPL 388 (479)
T ss_pred HHHHHHHccCccHHHHhhcCCCCCChHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 5555554321 22221222222 222233333344568999999988888878888888999999988876
Q ss_pred cch
Q 013039 411 YSL 413 (451)
Q Consensus 411 ~~~ 413 (451)
.|+
T Consensus 389 ~rP 391 (479)
T KOG1287|consen 389 PRP 391 (479)
T ss_pred CCC
Confidence 554
No 25
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.79 E-value=4.5e-17 Score=155.40 Aligned_cols=352 Identities=14% Similarity=0.126 Sum_probs=245.1
Q ss_pred cccCCChHHHHHHHHHhhhhccc-cccHHHHHHhhChhHHHHH-HHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAI-LILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~-~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~ 112 (451)
+.+|+.+.++--+.-++..||+| .+.-..+.+.+| +++++ ..++|++.++-++.+.|....+|..+ |+.+++++
T Consensus 10 ~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AG--PSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~g--SF~~~a~~ 85 (462)
T COG1113 10 GLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAG--PSVLLAYLIAGIFVFLIMRALGEMLVANPVSG--SFSDYARK 85 (462)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhC--cHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--cHHHHHHH
Confidence 35788999999999999999999 455677888889 66666 78899999999999999988778766 99999999
Q ss_pred HhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHH--HHHHhcCCCchhHHHHH
Q 013039 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASV--HFVLSHLPNFNAIAGVS 190 (451)
Q Consensus 113 ~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i--~~pl~~~~~l~~l~~~s 190 (451)
.+|+++| ++..+.+++.....+++-++.++.+++.++|.. ..+.+.+.+.++ ..-+.-.|...++.+.-
T Consensus 86 ~lG~~Ag-f~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v--------P~Wv~al~~~~l~~~~NL~sVk~FGE~EfWf 156 (462)
T COG1113 86 YLGPWAG-FLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV--------PQWVFALAAVVLLLAVNLISVKVFGELEFWF 156 (462)
T ss_pred HhcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888 999999999999999999999999999998743 233444443333 34455667777777443
Q ss_pred HHHHHHHHHHHHHHhhheeeeccC-----CCcccccc-ccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCC
Q 013039 191 LAAAVMSLSYSTIAWSASVRKGVQ-----PDVAYGYK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKP 264 (451)
Q Consensus 191 ~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p 264 (451)
.+--+..++.++++....+..+.. .+.+.-++ +-.-|+++.+++.++-+.+|||.+.+.+-....|- |||
T Consensus 157 AlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et----~dP 232 (462)
T COG1113 157 ALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEA----KDP 232 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhh----cCh
Confidence 333332333232222222221111 11111111 11236788999999999999999999999999999 899
Q ss_pred CCCCCchHHHH-----HHHHHHHHHHHHHhhhhhhccCcchh--HHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHH
Q 013039 265 SKGPMWRGVVV-----AYIVVALCYFPVALIGYWMFGNKVED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVF 337 (451)
Q Consensus 265 ~~~~~~~~~~~-----~~~~~~~~Y~~~~~~gy~~fg~~~~~--~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~ 337 (451)
+|. ++|++.. ...-+..+.++..+..+-.++++..+ .++....- ++...+.++.++.+.++++.--.+..-
T Consensus 233 ~k~-ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi-~~Aa~i~N~VVLtAa~S~~NSglysts 310 (462)
T COG1113 233 EKA-IPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGI-PFAAGIMNFVVLTAALSALNSGLYSTS 310 (462)
T ss_pred hhH-HHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCC-cccccceeEEEeechhhcccccccccc
Confidence 887 8887654 44444444556677777777654433 33333332 455667788888888888888888888
Q ss_pred HHHHHHhhhccC-------CCchh-HHHHHHHHHHHHHHHHHHHhccc--hhhhhhhhhhhhhhhhHHHHHHHHHHHHhc
Q 013039 338 DMIETLLVKKLN-------FSPTR-LLRFVVRNLYVASTMFIGITFPF--FGGLLGFFGGFAFAPTTYFLPCIIWLAIYK 407 (451)
Q Consensus 338 ~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~la~~v~~--~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~ 407 (451)
+++..+..+... .++.. ........+...+..++.+..|+ |+.+.+..+ ......+.+-.+.++|.||
T Consensus 311 RmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~--~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 311 RMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSG--LGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred hHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 888887643321 11222 33455666677778888888874 455555544 3344666777788888887
No 26
>TIGR00909 2A0306 amino acid transporter.
Probab=99.79 E-value=1.7e-16 Score=159.27 Aligned_cols=351 Identities=12% Similarity=0.056 Sum_probs=224.5
Q ss_pred cCCChHHHHHHHHHhhhhccccccHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhc
Q 013039 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMA-QLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (451)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~-~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G 115 (451)
+|+.+.++.++..+++++|+|++.+|.... ..|. ..++..++.++........+.|...+.|+.+ ...+..++.+|
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~G 78 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVAG--SPYTYAYEAMG 78 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--cceeeHHHHhC
Confidence 578999999999999999999999996544 4453 3556677778888888999999988888765 77788999999
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcC-CCCC------cchhhHHHHHHHHHHHHhcCCCchhHHH
Q 013039 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKE-PCKE------IKLSYFIMIFASVHFVLSHLPNFNAIAG 188 (451)
Q Consensus 116 ~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~-~~~~------~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 188 (451)
|+.| ++..+..++.....+..+....++++..+++..... +... .....+..+..++..-....++.+...+
T Consensus 79 ~~~g-~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~ 157 (429)
T TIGR00909 79 ELTA-FIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGK 157 (429)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHH
Confidence 9888 888888888877778888888888888777632110 0000 0000011122222222334457888888
Q ss_pred HHHHHHHHHHHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCC
Q 013039 189 VSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGP 268 (451)
Q Consensus 189 ~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~ 268 (451)
++.+.....+..++++++....+...++.++ ..+.++.++..++...+|+|.|.+.+....+|+ |||+|+
T Consensus 158 ~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~----~~p~r~- 227 (429)
T TIGR00909 158 VNDILVVLKVAALLLFAALGAIHFASNNYTP-----FMPMGFGGVGAATALVFFAFIGFEAISTAAEEV----KNPERD- 227 (429)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhCcHHhcCC-----CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhc----cCcccc-
Confidence 8877777655444333332222221111111 113456788999999999999999999999999 899776
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhhhccCc-------chhHHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHH
Q 013039 269 MWRGVVVAYIVVALCYFPVALIGYWMFGNK-------VEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIE 341 (451)
Q Consensus 269 ~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~-------~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~ 341 (451)
.+|++..+..++.++|++.........+.+ ....+..+.. .++...+..+...++.+.+....+....+.+.
T Consensus 228 ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~ 306 (429)
T TIGR00909 228 IPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLG-QGIGGLILTAGAVFSIASVMLAGIYGTSRVLF 306 (429)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999876654433211 0112222222 34566677788888888877777766666666
Q ss_pred HHhhhcc--------CCCchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhc
Q 013039 342 TLLVKKL--------NFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYK 407 (451)
Q Consensus 342 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~ 407 (451)
...+++. |.+.+.+.+....... .+.++. ...+++.+.++.+ ....+.|++..+..++.+|
T Consensus 307 ~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~--i~~~~~-~~~~~~~l~~~~~--~~~~~~y~~~~~a~~~lr~ 375 (429)
T TIGR00909 307 AMSRDGLLPGSLSKVHPKTGTPHMSIIIFSL--TAALLA-SLVPLEGLAELTS--IGTLIAFAAVNVAVIILRR 375 (429)
T ss_pred HHHcCCCCcHHHHHcCCCCCCcHHHHHHHHH--HHHHHH-HHcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 5554321 2222334333322221 122222 2345666666543 2345667776666666554
No 27
>PRK11021 putative transporter; Provisional
Probab=99.78 E-value=1.9e-15 Score=150.49 Aligned_cols=345 Identities=13% Similarity=0.158 Sum_probs=204.6
Q ss_pred ChHHHHHHHHHhhhhccccccHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhcccc
Q 013039 40 AKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKL 118 (451)
Q Consensus 40 ~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~~~ 118 (451)
.+++++....+++++|+|++.+|.. .+.+|- .+++..++.+++.......+.|...+.|+++ .....+++.+||++
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~aG--G~y~y~~~~~G~~~ 77 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHAG--GPAHFVGMAFGPRL 77 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHhHHHHhCchh
Confidence 3689999999999999999999965 555564 5677788889999999999999999899877 88899999999998
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 013039 119 GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSL 198 (451)
Q Consensus 119 g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~v 198 (451)
| +...+..+........+.......++...++ . ..+. .....+...+.+-+...++.+...+++.+..+..+
T Consensus 78 g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~-~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~ 149 (410)
T PRK11021 78 G-RVTGWLFLSVIPVGLPAALQIAAGFGQALFG----W--SSWQ-LLLAELLTLALLWLLNLRGASSSANLQTVIALLIV 149 (410)
T ss_pred H-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC----C--CCch-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 8 7777777654333333333333344433322 1 1111 11111111222223334567777776665444322
Q ss_pred HHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCCchHHHHHHH
Q 013039 199 SYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYI 278 (451)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~ 278 (451)
..+..... .+..+..+..+. ...+.++.++..++....|+|.|.+.+....+|+ |||+|+ ++|++..+..
T Consensus 150 ~i~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~k~-iPrAi~~~~~ 219 (410)
T PRK11021 150 ALVVAIWW----AGDIKPADIPFP-APGSIEWSGLFAALGVMFWCFVGIEAFAHLASEF----KNPERD-FPRALMIGLL 219 (410)
T ss_pred HHHHHHHH----HcCCchhcCCCC-CCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhc----cCcccc-ccHHHHHHHH
Confidence 22111111 111111111111 1123467889999999999999999999999999 999887 9999999999
Q ss_pred HHHHHHHHHHhhh--hhhccCcch--h---HHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHhhhc----
Q 013039 279 VVALCYFPVALIG--YWMFGNKVE--D---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK---- 347 (451)
Q Consensus 279 ~~~~~Y~~~~~~g--y~~fg~~~~--~---~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~---- 347 (451)
++.++|++....- ....+|... + .+...... ++...+..+...++.+.+.........+.+....+++
T Consensus 220 ~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~ 298 (410)
T PRK11021 220 LAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFG-GYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPS 298 (410)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccH
Confidence 9999999987653 222233211 1 11222111 1222344445555555555544444444444443321
Q ss_pred ----cCCCchhHHHHHHHHHHH-HHHHHHHH-hccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCC
Q 013039 348 ----LNFSPTRLLRFVVRNLYV-ASTMFIGI-TFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR 409 (451)
Q Consensus 348 ----~~~~~~~~~~~~~~~~~~-~~~~~la~-~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~ 409 (451)
.+ +++.+.+.......+ ....++.. ...+++.+.+... ....+.|+++.+..+|.++++
T Consensus 299 ~~~k~~-~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~--~~~li~y~~~~~a~~~l~~~~ 363 (410)
T PRK11021 299 YLARLS-ARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYAN--GIFVLIYLLCMLAACKLLKGR 363 (410)
T ss_pred HHHhhc-cCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc
Confidence 12 223344433322222 22222221 2356777777644 335688888888888877654
No 28
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.78 E-value=7.4e-16 Score=155.94 Aligned_cols=355 Identities=12% Similarity=0.095 Sum_probs=216.8
Q ss_pred CCChHHHHHHHHHhhhhccccccHHHHH-HhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-ccCCHHHHHHHHhc
Q 013039 38 RNAKWWYSAFHNVTAMVGAGVLSLPYAM-AQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGK-RFDRYHELGQHAFG 115 (451)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~lP~a~-~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~-~~~sy~~~~~~~~G 115 (451)
|+.+.++.++..++++||+|++.+|... +.+|....++..++.++.....+..+.|.+.+.|+. + ...+.+++.+|
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gG--G~y~y~~~~fG 78 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDG--GVYSYAKAGFG 78 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--ChhhhHHhHcC
Confidence 5789999999999999999999999764 455644345557888888888999999998888863 2 56677999999
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHH-HHHHHHHHHhcCCCchhHHHHHHHHH
Q 013039 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIM-IFASVHFVLSHLPNFNAIAGVSLAAA 194 (451)
Q Consensus 116 ~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~~ 194 (451)
|+.| ++..+..++.......++.......+..+++...+ +.+...+.. +..+..+-....+..+..++++.+..
T Consensus 79 ~~~g-f~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~ 153 (468)
T TIGR03810 79 PFMG-FISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG----GNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITT 153 (468)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC----CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9888 88888888776666666666666666555543211 111111221 11111222223467777777777766
Q ss_pred HHHHHHHHHHhhheeeeccCCCcccc-ccc----cCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCC
Q 013039 195 VMSLSYSTIAWSASVRKGVQPDVAYG-YKA----KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM 269 (451)
Q Consensus 195 ~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~ 269 (451)
...+..++++++........+..... +.+ .+....+.++..++....|+|.|.+......+|. || +++.
T Consensus 154 ~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~----k~--~k~i 227 (468)
T TIGR03810 154 IAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARA----EK--RSDV 227 (468)
T ss_pred HHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhc----cC--cccc
Confidence 54443322222211111001111100 000 1112234567788899999999999999999998 65 3448
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhccCcc----h----hHHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHH
Q 013039 270 WRGVVVAYIVVALCYFPVALIGYWMFGNKV----E----DNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIE 341 (451)
Q Consensus 270 ~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~----~----~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~ 341 (451)
+|++..+...+.++|.+..+..+...+++. . .....+.. .++...+..++..++.+.+.........+...
T Consensus 228 p~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~-g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~ 306 (468)
T TIGR03810 228 GKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMV-GTWGAVLINIGLIISILGAWLSWTLLPAEIPL 306 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998877665443211 1 12222322 24556677788888888877776666656555
Q ss_pred HHhhhc--------cCCCchhHHHHHHHHHHHHHHHHHHHhc--cchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCC
Q 013039 342 TLLVKK--------LNFSPTRLLRFVVRNLYVASTMFIGITF--PFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR 409 (451)
Q Consensus 342 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~la~~v--~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~ 409 (451)
...+++ .+ +++.+.+.+.....+.....+.... +.++.+.++.+ ....+.|+++.+.+++.++++
T Consensus 307 a~ardg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~--~~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 307 LMAKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLAT--SAILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred HHHhCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence 544322 12 2234444443332222222211112 33555656543 345688999999888887543
No 29
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.77 E-value=8.4e-16 Score=155.52 Aligned_cols=354 Identities=11% Similarity=0.055 Sum_probs=207.9
Q ss_pred cccCCChHHHHHHHHHhhhhccccccHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPY-AMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~ 113 (451)
+.+|+.+.++.....++++||+|++..|. +++++|. ..+...++.+++.......+.|.....+..+ ++.+++++.
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~--~~~~ya~~~ 93 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLEYK--SFSDFASDL 93 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cHHHHHHHH
Confidence 46889999999999999999999999875 6778786 3555677788888888888888876444433 778899999
Q ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 013039 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (451)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 193 (451)
+||..| +++.+..++.......+.....+.++..+++. .....+..++..+.. +.-.++.+...+++.+.
T Consensus 94 ~g~~~g-f~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~--------~~~~~~~~~~~~~~~-~iN~~g~~~~~~i~~~~ 163 (469)
T PRK11049 94 LGPWAG-YFTGWTYWFCWVVTGIADVVAITAYAQFWFPD--------LSDWVASLAVVLLLL-SLNLATVKMFGEMEFWF 163 (469)
T ss_pred hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHH
Confidence 999888 88888888776555555555566555544331 122222222222222 22234566666666554
Q ss_pred HHHHHHHHHHHhhheee---ec--cCCC----cccccccc-CcccchhhHHHHhhhHhhhcccceeecccccccccCCCC
Q 013039 194 AVMSLSYSTIAWSASVR---KG--VQPD----VAYGYKAK-TAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEK 263 (451)
Q Consensus 194 ~~~~v~~~~~~~~~~~~---~~--~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~ 263 (451)
....+..++.+++..+. .+ ...+ .+..++.. ..+.++.++..++....|+|.|.+.+....+|+ ||
T Consensus 164 ~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----kn 239 (469)
T PRK11049 164 AMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET----KD 239 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh----cC
Confidence 44332222222211111 00 0111 11111111 113456779999999999999999999999999 99
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHhhhhhhccCc-c---hh---HHhhCCCChhHHHHHHHHHHHHHHHhhhccccccH
Q 013039 264 PSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK-V---ED---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPV 336 (451)
Q Consensus 264 p~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~-~---~~---~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~ 336 (451)
|+|+ ++|++..+...+.++|.+........-+.+ . .+ ....... ..+...+..++.+++.+.+........
T Consensus 240 P~r~-iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g-~~~~~~~~~~~~~~s~~~~~~~~~~~~ 317 (469)
T PRK11049 240 PEKS-LPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVG-LPAAASVINFVVLTSAASSANSGVFST 317 (469)
T ss_pred HhhH-HHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcC-ChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887 899998888888888887766544332211 1 01 1122222 234455566666666666555545555
Q ss_pred HHHHHHHhhhcc--------CCCchhHHHHHHHHHHHH-HHHHHHHhccchhhhhhhhhh--hhhhhhHHHHHHHHHHHH
Q 013039 337 FDMIETLLVKKL--------NFSPTRLLRFVVRNLYVA-STMFIGITFPFFGGLLGFFGG--FAFAPTTYFLPCIIWLAI 405 (451)
Q Consensus 337 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~la~~v~~~~~i~~~~G~--~~~~~~~~i~P~l~~l~~ 405 (451)
.+.+....+++. +++ +.+.+.+.....+. ....+....++....++..-. .....+.|+++.+.+++.
T Consensus 318 sR~l~a~ardg~lP~~~~kv~~~-~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~l 396 (469)
T PRK11049 318 SRMLFGLAQEGVAPKAFAKLSKR-AVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVY 396 (469)
T ss_pred HHHHHHHHhCCCCCHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554443221 222 34444443332222 222233334544334443222 223457788888888877
Q ss_pred hcC
Q 013039 406 YKP 408 (451)
Q Consensus 406 ~~~ 408 (451)
+|+
T Consensus 397 r~~ 399 (469)
T PRK11049 397 RKQ 399 (469)
T ss_pred HHh
Confidence 654
No 30
>PRK10746 putative transport protein YifK; Provisional
Probab=99.77 E-value=1.3e-15 Score=153.50 Aligned_cols=353 Identities=12% Similarity=0.083 Sum_probs=215.4
Q ss_pred ccCCChHHHHHHHHHhhhhccccccHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHh
Q 013039 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPY-AMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (451)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~-a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~ 114 (451)
.+|+.+.++..+..++++||+|++..|. +.+.+|. ..++..++.+++....+..+.|.+.+.|..+ ++.+.+++.+
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sG--g~~~y~~~~~ 84 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTG--SFAVYAHRYM 84 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHh
Confidence 5788999999999999999999999985 5777776 3556677888888999999999988888877 8999999999
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 013039 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (451)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 194 (451)
||++| +++.+..++.......+.....+.+++.+.+. .....+..++.++... .-.++.+..+.+.....
T Consensus 85 g~~~G-f~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~--------~~~~~~~~~~~~~~~~-lN~~gv~~~~~~e~~~~ 154 (461)
T PRK10746 85 SPFFG-YLTAWSYWFMWMAVGISEITAIGVYVQFWFPE--------MAQWIPALIAVALVAL-ANLAAVRLYGEIEFWFA 154 (461)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--------CchHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHH
Confidence 99999 88898888887666666666666666554331 1222333332222221 22234444444433222
Q ss_pred HHHHHHH----HHHhh-heeeeccC---CCccccccc--cCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCC
Q 013039 195 VMSLSYS----TIAWS-ASVRKGVQ---PDVAYGYKA--KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKP 264 (451)
Q Consensus 195 ~~~v~~~----~~~~~-~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p 264 (451)
...+..+ ++.+. .....+.. .+.+ ++.+ ...+.++.++..++....|+|.|.+.+....+|+ |||
T Consensus 155 ~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~----knP 229 (461)
T PRK10746 155 MIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFS-NLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA----KNP 229 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCccc-cccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh----cCh
Confidence 2211111 11110 00111110 1111 1110 1123467889999999999999999999999999 999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhhhhhccCcch----hH---HhhCCCChhHHHHHHHHHHHHHHHhhhccccccHH
Q 013039 265 SKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE----DN---ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVF 337 (451)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~~----~~---il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~ 337 (451)
+|. ++|++..+...+.++|++.........+.+.. ++ ...+... .....+.++..+++.+.+....++...
T Consensus 230 ~k~-iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~-~~~~~i~~~~il~a~~s~~n~~~~~~s 307 (461)
T PRK10746 230 QVT-LRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGI-TAAAGIINFVVLTAALSGCNSGMYSCG 307 (461)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887 99999988888888998865544333332111 11 1222221 233445566666666666666666666
Q ss_pred HHHHHHhhhcc--------CCCchhHHHHHHHHHH-HHHHHHHHHhccchhhhhhhhhh--hhhhhhHHHHHHHHHHHHh
Q 013039 338 DMIETLLVKKL--------NFSPTRLLRFVVRNLY-VASTMFIGITFPFFGGLLGFFGG--FAFAPTTYFLPCIIWLAIY 406 (451)
Q Consensus 338 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~la~~v~~~~~i~~~~G~--~~~~~~~~i~P~l~~l~~~ 406 (451)
+.+....+++. + +.+.+.+.+..... .+....+....++-+.+++...+ .....+.|+++.+.++|.|
T Consensus 308 R~l~~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r 386 (461)
T PRK10746 308 RMLYALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFR 386 (461)
T ss_pred HHHHHHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666654322 2 22334444332221 12222233334444444443332 2335788889988888887
Q ss_pred cCC
Q 013039 407 KPR 409 (451)
Q Consensus 407 ~~~ 409 (451)
|++
T Consensus 387 ~~~ 389 (461)
T PRK10746 387 RAH 389 (461)
T ss_pred Hhc
Confidence 653
No 31
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.77 E-value=7.6e-16 Score=155.38 Aligned_cols=352 Identities=15% Similarity=0.123 Sum_probs=212.0
Q ss_pred cccCCChHHHHHHHHHhhhhccccccHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLP-YAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP-~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~ 113 (451)
+.+|+.+.++..+..+++++|+|++.+| .+.+..|. .+++..++.+++....+..+.|...+.|.++ +..+.+++.
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~G--g~~~~~~~~ 85 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDTG--SFSTYADDA 85 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Confidence 4678999999999999999999999999 56778785 4777788889999999999999988888876 888999999
Q ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 013039 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (451)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 193 (451)
+||++| ++..+..++.....+.+.....+..+..+.+. .....+.+++.++. -+.-.+..+...++....
T Consensus 86 ~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~-~~~n~~gv~~~~~~~~~~ 155 (452)
T TIGR01773 86 IGRWAG-FTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD--------IPLWLFSLILTIVL-TLTNLYSVKSYGEFEFWF 155 (452)
T ss_pred hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------CcHHHHHHHHHHHH-HHHHHHhcchhhHHHHHH
Confidence 999888 88888888777777666666666666654431 11122222222221 112223455555554443
Q ss_pred HHHHHHHHHHHhhh---eeeeccCC----Ccccccc-ccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCC
Q 013039 194 AVMSLSYSTIAWSA---SVRKGVQP----DVAYGYK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (451)
Q Consensus 194 ~~~~v~~~~~~~~~---~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~ 265 (451)
....+..++.+++. ....+... +.+...+ ....+.++.++..++....|+|.|.+.+....+|+ |||+
T Consensus 156 ~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~----k~P~ 231 (452)
T TIGR01773 156 ALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAES----SNPI 231 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhh----cChh
Confidence 33222211111110 01111110 1111111 11123456679999999999999999999999999 9998
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhhhhhhccCcc----h----hHHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHH
Q 013039 266 KGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV----E----DNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVF 337 (451)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~----~----~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~ 337 (451)
|+ .+|++..+...+.++|++.........+.+. + ....+.... ++...+..++..++.+.+.....+...
T Consensus 232 r~-iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~-~~~~~ii~~~~~~~~~~~~~~~~~~~s 309 (452)
T TIGR01773 232 KS-ITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGI-PHAKLIMDFVVLTAVLSCLNSALYTTS 309 (452)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86 9999998888899999887655443333111 0 112222222 334455556666666666655555555
Q ss_pred HHHHHHhhhcc--------CCCchhHHHHHHHHHHHHHHHHHHHhcc---chhhhhhhhhhhhhhhhHHHHHHHHHHHHh
Q 013039 338 DMIETLLVKKL--------NFSPTRLLRFVVRNLYVASTMFIGITFP---FFGGLLGFFGGFAFAPTTYFLPCIIWLAIY 406 (451)
Q Consensus 338 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~la~~v~---~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~ 406 (451)
+.+....+++. + +.+.+.+.+.....+.....+....+ .++.+.+..+. ...+.|+++.+.+++.|
T Consensus 310 R~~~a~ardg~lP~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~--~~~~~y~~~~~~~i~~r 386 (452)
T TIGR01773 310 RMLYSLAERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGA--IALLVYLVIAVSQLRMR 386 (452)
T ss_pred HHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 66555544321 2 22344444433322222211111111 13334444332 24588888887777766
Q ss_pred cC
Q 013039 407 KP 408 (451)
Q Consensus 407 ~~ 408 (451)
++
T Consensus 387 ~~ 388 (452)
T TIGR01773 387 KK 388 (452)
T ss_pred HH
Confidence 53
No 32
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.76 E-value=1e-15 Score=156.38 Aligned_cols=358 Identities=10% Similarity=0.038 Sum_probs=198.8
Q ss_pred ccccCCChHHHHHHHHHhhhhccccccHHHH-HHhhChhH-HHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHH
Q 013039 34 ITSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGP-GVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQ 111 (451)
Q Consensus 34 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~~-gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~ 111 (451)
.+.+|+.+.++.+...+++++|+|++..|.. ...+|-.. ..+..++.+++....+..+.|.+.+.|.++ ......+
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sG--G~y~~~~ 115 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSG--GEYNYIL 115 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--chhhhHH
Confidence 3568899999999999999999999999865 55566431 234456777888888999999988888766 7888899
Q ss_pred HHhcccccchhhHHHHHHH-HHHHHHHHHHHhhhhHHH-HHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHH
Q 013039 112 HAFGEKLGLYIVVPQQLIV-EVGVCIVYMVTGGKSLHK-VHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGV 189 (451)
Q Consensus 112 ~~~G~~~g~~~~~~~~~~~-~~g~~~~y~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 189 (451)
+.+||++| ++..+..+.. ..+.+..+....++++.. +.+.. ....+....+. +..++..-....++.+...++
T Consensus 116 ~~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~---~~~~~~~~~i~-~~~i~~~~~ln~~Gvk~~~~~ 190 (501)
T TIGR00911 116 EVFGPLLA-FLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDC---EVPEWAIRLVA-VLCVLLLTLVNCLSVKWATRV 190 (501)
T ss_pred hHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCchHHHHHHH-HHHHHHHHHHHHhhhHHHHHH
Confidence 99999888 6665554432 223344444445554322 22110 00011111111 111122222234567777777
Q ss_pred HHHHHHHHHHHHHHHhhhee---eeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCC
Q 013039 190 SLAAAVMSLSYSTIAWSASV---RKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK 266 (451)
Q Consensus 190 s~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~ 266 (451)
+.+.....+..++++++..+ ..+..++.++...-.....++.++..++...+|+|.|.+.+..+.+|+ |||+|
T Consensus 191 ~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~----knP~r 266 (501)
T TIGR00911 191 QDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEV----KNPYR 266 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHh----cCchh
Confidence 77666654443332222221 111111111110000112345678889999999999999999999999 99987
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhccCcc-h--hHHhhCCCC--hhHHHHHHHHHHHHHHHhhhccccccHHHHHH
Q 013039 267 GPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV-E--DNILLSLEK--PTWLIVMANFFVVVHVIGSYQIYAMPVFDMIE 341 (451)
Q Consensus 267 ~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~-~--~~il~~~~~--~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~ 341 (451)
+ ++|++..+..++.++|++.........+.+. . +.....+.+ ......+..++..++.+.+..-.+....+.+.
T Consensus 267 ~-iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~is~~~~~~~~~~~~sR~l~ 345 (501)
T TIGR00911 267 T-LPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWAMPALVGLSCFGSVNGSLFSSSRLFF 345 (501)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 9999999999999999998765544433211 0 001100000 00122334444455555555444444555554
Q ss_pred HHhhhcc--------CCCchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcC
Q 013039 342 TLLVKKL--------NFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP 408 (451)
Q Consensus 342 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~ 408 (451)
...+++. +++.+.+.+.+..... ..++.....++..+.++.+ ....+.|++..+-.++.|++
T Consensus 346 a~ardg~lP~~~~~v~~~~~~P~~all~~~~---i~~l~~~~~~~~~l~~~~~--~~~~i~y~l~~~a~i~lR~~ 415 (501)
T TIGR00911 346 VGGREGHLPSLLSMIHVKRLTPLPSLLIVCT---LTLLMLFSGDIYSLINLIS--FANWLFNALAVAGLLWLRYK 415 (501)
T ss_pred HHHhcCCccHHHHHhcCCCCCCHHHHHHHHH---HHHHHHccCCHHHHHHHHH--HHHHHHHHHHHHHHHheecc
Confidence 4443221 2222233333322211 1112223456666665433 23346666665555555543
No 33
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.76 E-value=2.3e-15 Score=151.66 Aligned_cols=352 Identities=12% Similarity=0.098 Sum_probs=215.8
Q ss_pred cccCCChHHHHHHHHHhhhhccccccHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~ 113 (451)
+.+|+.+.++..+..++++||+|++..|.. .+++|. ..++..++.+++....+..+.|...+.|..+ ++.+.+++.
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aG--g~y~~~~~~ 85 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAG--SFSHFAYKY 85 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Confidence 467899999999999999999999999964 666664 4566688888888889999999988888877 899999999
Q ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 013039 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (451)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 193 (451)
+||..| ++..+..++.....+.+.....++++..+.+. .+...+..++..+...+ -..+.+....++...
T Consensus 86 ~g~~~g-f~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~--------~~~~~~~~i~~~~~~~l-N~~gv~~~~~~~~~~ 155 (456)
T PRK10238 86 WGSFAG-FASGWNYWVLYVLVAMAELTAVGKYIQFWYPE--------IPTWVSAAVFFVVINAI-NLTNVKVFGEMEFWF 155 (456)
T ss_pred cCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------CcHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHH
Confidence 999888 99999998888877777777777777655431 12222322222222211 223455555555544
Q ss_pred HHHHHHHHHHHhh----heeeeccCC--Ccccccccc-CcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCC
Q 013039 194 AVMSLSYSTIAWS----ASVRKGVQP--DVAYGYKAK-TAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK 266 (451)
Q Consensus 194 ~~~~v~~~~~~~~----~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~ 266 (451)
....+..++.+++ ........+ ..+..++.. ..+.++.++..+++...|+|.|.+.+....+|+ |||+|
T Consensus 156 ~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~----knP~r 231 (456)
T PRK10238 156 AIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEA----DNPEQ 231 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhh----cChhh
Confidence 4433222211111 111111111 111111111 113456678888999999999999999999999 99988
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhh--hhccCc--chh---HHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHH
Q 013039 267 GPMWRGVVVAYIVVALCYFPVALIGY--WMFGNK--VED---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDM 339 (451)
Q Consensus 267 ~~~~~~~~~~~~~~~~~Y~~~~~~gy--~~fg~~--~~~---~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~ 339 (451)
. ++|++..+.....++|+....... .-..+- ..+ .++.+... .+...+.++...++.+.+..-..+...+.
T Consensus 232 ~-iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~-~~~~~i~~~~i~~~~~s~~~~~~~~~sR~ 309 (456)
T PRK10238 232 S-IPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGD-TFVANALNIVVLTAALSVYNSCVYCNSRM 309 (456)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 999998888888888866533321 111111 111 22233322 34445566666666666666556666666
Q ss_pred HHHHhhhcc--------CCCchhHHHHHHHHHHHHHHHHHH-Hhcc--chhhhhhhhhhhhhhhhHHHHHHHHHHHHhcC
Q 013039 340 IETLLVKKL--------NFSPTRLLRFVVRNLYVASTMFIG-ITFP--FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP 408 (451)
Q Consensus 340 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~la-~~v~--~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~ 408 (451)
+....+++. + +++.+.+.+.....+.....+. ...| .++.+.++.+ .+..+.|++|.+.+++.+|+
T Consensus 310 l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 310 LFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVV--SALVINWAMISLAHMKFRRA 386 (456)
T ss_pred HHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 555544321 2 2234444444333332222221 1222 2555555533 45568999999999987764
No 34
>PRK10836 lysine transporter; Provisional
Probab=99.76 E-value=1.5e-15 Score=154.51 Aligned_cols=351 Identities=14% Similarity=0.123 Sum_probs=200.7
Q ss_pred cccCCChHHHHHHHHHhhhhccccccHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPY-AMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~ 113 (451)
+.+|+.+.++..+..++++||+|++..|. +.+++|....++..++.+++....+..+.|...+.|..+ +....+++.
T Consensus 12 ~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sG--g~y~y~~~~ 89 (489)
T PRK10836 12 GLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSG--SFATYGQNY 89 (489)
T ss_pred cccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Confidence 46789999999999999999999999996 677778644677788899999999999999999999877 888999999
Q ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 013039 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (451)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 193 (451)
+|+.+| +++.+..++.. ..+.+........ ......+. .....+..++.++.. ..-..+.+..+.++...
T Consensus 90 ~g~~~g-f~~Gw~~~~~~-~~~~a~~~~a~~~---~~~~~~~~----~~~~~~~~~~~~~~~-~lN~~gv~~~~~~~~~~ 159 (489)
T PRK10836 90 VEEGFG-FALGWNYWYNW-AVTIAVDLVAAQL---VMSWWFPD----TPGWIWSALFLGVIF-LLNYISVRGFGEAEYWF 159 (489)
T ss_pred cChHHH-HHHHHHHHHHH-HHHHHHHHHHHHH---HhhhcCCC----CchHHHHHHHHHHHH-HHHHHcchhhhhhHHHH
Confidence 999888 77777766543 2222222222221 11211111 111222222222221 11222344333332222
Q ss_pred HHHHH---HH---HHHHhhheeeeccC-CCcccccc--ccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCC
Q 013039 194 AVMSL---SY---STIAWSASVRKGVQ-PDVAYGYK--AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKP 264 (451)
Q Consensus 194 ~~~~v---~~---~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p 264 (451)
....+ .. +.++......++.. .+.+ ++. ..+.+.++..+..+.....|+|.|.+.+....+|+ |||
T Consensus 160 ~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP 234 (489)
T PRK10836 160 SLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWS-NWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES----EDP 234 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccc-cCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHh----cCH
Confidence 21111 11 11111111111111 0111 111 11112345566767777789999999999999999 999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhhhhhccCcchh---------------HHhhCCCChhHHHHHHHHHHHHHHHhhh
Q 013039 265 SKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVED---------------NILLSLEKPTWLIVMANFFVVVHVIGSY 329 (451)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~~~---------------~il~~~~~~~~~~~~~~~~~~i~~~~s~ 329 (451)
+|+ ++|++..++..+.++|++.........+.+..+ ....+.. ..+...+..++.+++++.+.
T Consensus 235 ~r~-iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g-~~~~~~ii~~~il~a~~~~~ 312 (489)
T PRK10836 235 AKN-IPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAG-LLSAAAVMNAVILTAVLSAG 312 (489)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcC-ChhHHHHHHHHHHHHHHHHH
Confidence 887 999999999999999998876544433311111 1111111 12234455666666767666
Q ss_pred ccccccHHHHHHHHhhhcc--------CCCchhHHHHHHHHHHHHHHHHHHHhccc---hhhhhhhhhhhhhhhhHHHHH
Q 013039 330 QIYAMPVFDMIETLLVKKL--------NFSPTRLLRFVVRNLYVASTMFIGITFPF---FGGLLGFFGGFAFAPTTYFLP 398 (451)
Q Consensus 330 pl~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~la~~v~~---~~~i~~~~G~~~~~~~~~i~P 398 (451)
.-.++...+.+..+.+++. + +++.+.+.+.....+.....+....++ +..+.++.+ ....+.|++.
T Consensus 313 n~~~~~~sR~l~a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~--~~~~~~y~~~ 389 (489)
T PRK10836 313 NSGMYASTRMLYTLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSG--MTGFIAWLGI 389 (489)
T ss_pred HHHHHHHHHHHHHHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 6666666666665544321 2 223444444333332222222212221 233444444 3455778888
Q ss_pred HHHHHHHhc
Q 013039 399 CIIWLAIYK 407 (451)
Q Consensus 399 ~l~~l~~~~ 407 (451)
++.+++.||
T Consensus 390 ~~a~l~~R~ 398 (489)
T PRK10836 390 AISHYRFRR 398 (489)
T ss_pred HHHHHHHHH
Confidence 888888766
No 35
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.75 E-value=2.4e-15 Score=161.40 Aligned_cols=250 Identities=14% Similarity=0.156 Sum_probs=173.6
Q ss_pred cccccCCChHHHHHHHH-HhhhhccccccHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCCccCCHHHH
Q 013039 33 PITSSRNAKWWYSAFHN-VTAMVGAGVLSLP-YAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM-VPGKRFDRYHEL 109 (451)
Q Consensus 33 ~~~~~~~~s~~~~~~~l-~~~~iG~GiL~lP-~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~-~~~~~~~sy~~~ 109 (451)
|..+.++.+++.+++.- +.+++|+|++.-| +...++|...+++.+++.++++..++..+.+.+.+ .+..+ .-+.+
T Consensus 71 ~~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aG--G~Y~y 148 (953)
T TIGR00930 71 PPAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG--GAYYL 148 (953)
T ss_pred CCCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--HHHHH
Confidence 33456789999999998 9999999987765 77889998888889999999999999999998875 55544 56678
Q ss_pred HHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCC-CCCc-chhhHHHHHHHHHHHHhcCCCchhHH
Q 013039 110 GQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEP-CKEI-KLSYFIMIFASVHFVLSHLPNFNAIA 187 (451)
Q Consensus 110 ~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~-~~~~-~~~~~~~i~~~i~~pl~~~~~l~~l~ 187 (451)
.++.+|+.+| ..+.++.++.....+..|...+++++..+++...... .... +.+.+..+..+++..+ ...+.+...
T Consensus 149 isralGp~~G-f~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~I-n~~Gvk~~a 226 (953)
T TIGR00930 149 ISRSLGPEFG-GSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGI-SFAGMEWEN 226 (953)
T ss_pred HHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHH-HHhhHHHHH
Confidence 8999999888 8888888888888888999999999988875321100 0001 1122222222222222 334677777
Q ss_pred HHHHHHHHHHHHHHHHHhhheeeeccCC---Ccc-cc---ccc--cCc-ccchhhHHHHhhhHhhhcccceeeccccccc
Q 013039 188 GVSLAAAVMSLSYSTIAWSASVRKGVQP---DVA-YG---YKA--KTA-AGTVFNFFSALGDVAFAYAGHNVVLEIQATI 257 (451)
Q Consensus 188 ~~s~~~~~~~v~~~~~~~~~~~~~~~~~---~~~-~~---~~~--~~~-~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m 257 (451)
+++.+.+++.++.++.+++..+...... +.. .. +.. .+. +....++...++++++||.|......+.+|+
T Consensus 227 k~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgEl 306 (953)
T TIGR00930 227 KAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDL 306 (953)
T ss_pred HHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777766654443333333322211000 000 00 000 011 1222348888898999999999999999999
Q ss_pred ccCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 013039 258 PSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIG 291 (451)
Q Consensus 258 ~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~~~g 291 (451)
|||+|. +++++..+..+++++|+++.+..
T Consensus 307 ----KnP~r~-IPratl~ai~i~~vlYllv~~~~ 335 (953)
T TIGR00930 307 ----KDPQKA-IPKGTLLAILTTTVVYLGSVVLF 335 (953)
T ss_pred ----cChhhh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 99999999999999999997643
No 36
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.74 E-value=3.4e-15 Score=150.35 Aligned_cols=239 Identities=17% Similarity=0.187 Sum_probs=154.8
Q ss_pred cccCCChHHHHHHHHHhhhhccccccHHHH-HHhhChh-HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWG-PGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~-~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~ 112 (451)
+.+|+.+.++.+...++.++|+|++..|.. ....|-. ..++.+++.+++....+..+.|...+.|.++ ......++
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~G--G~y~y~~~ 82 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENG--ADYVYLKN 82 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CceeeHHH
Confidence 457899999999999999999999999976 4455643 3455677788888889999999988888766 55567889
Q ss_pred HhcccccchhhHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhh--HHHHHHHHHHHHhcCCCchhHHHH
Q 013039 113 AFGEKLGLYIVVPQQL-IVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSY--FIMIFASVHFVLSHLPNFNAIAGV 189 (451)
Q Consensus 113 ~~G~~~g~~~~~~~~~-~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~i~~~i~~pl~~~~~l~~l~~~ 189 (451)
.+||.+| ++..+..+ .........+....++++....+ ++... ...+..++.+-..-.++.+...++
T Consensus 83 ~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~---------~~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v 152 (445)
T PRK11357 83 AGSRPLA-FLSGWASFWANDAPSLSIMALAIVSNLGFLTP---------IDPLLGKFIAAGLIIAFMLLHLRSVEGGAAF 152 (445)
T ss_pred hcCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------CchHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999888 66666543 22333444455556665543321 11111 111111112222234566666666
Q ss_pred HHHHHHHHHHHHHHHhhhee--eeccCCCcccccc-ccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCC
Q 013039 190 SLAAAVMSLSYSTIAWSASV--RKGVQPDVAYGYK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK 266 (451)
Q Consensus 190 s~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~ 266 (451)
+.+.....+..++++++... .++. +.+.... ......++.++..++....|+|.|.+......+|+ |||+|
T Consensus 153 ~~~~~~~~~~~l~~~ii~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r 226 (445)
T PRK11357 153 QTLITIAKIIPFTIVIGLGIFWFKAE--NFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEI----KNPGK 226 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCc--cccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHh----cCccc
Confidence 66655544432222221111 1111 1110100 00111235678888999999999999999999999 99988
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhh
Q 013039 267 GPMWRGVVVAYIVVALCYFPVALIGY 292 (451)
Q Consensus 267 ~~~~~~~~~~~~~~~~~Y~~~~~~gy 292 (451)
+ ++|++..++.+++++|++......
T Consensus 227 ~-iP~Ai~~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 227 T-MPRALIGSCLLVLVLYTLLALVIS 251 (445)
T ss_pred c-chHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 999999999999999998776543
No 37
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.74 E-value=5.5e-15 Score=148.78 Aligned_cols=350 Identities=14% Similarity=0.082 Sum_probs=208.5
Q ss_pred ccCCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhc
Q 013039 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (451)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G 115 (451)
.+|+.+.++.....++.++|......+..++..|+...++..++.+++....+..+.|.+.+.|.++ .....+++.+|
T Consensus 5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~G--g~y~~~~~~~G 82 (442)
T TIGR00908 5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAG--GGYGFARRAFG 82 (442)
T ss_pred hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHHhC
Confidence 5788999999999999999855556678888889864455566777777778889999998888876 88889999999
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 013039 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAV 195 (451)
Q Consensus 116 ~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 195 (451)
+++| ++..+..++.......++....++++..+++.. ....+..++..+.. +...++.+...+++.+...
T Consensus 83 ~~~g-f~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~--------~~~~~~~~~~~~~~-~ln~~g~~~~~~i~~~~~~ 152 (442)
T TIGR00908 83 PWGG-FLAGTAILIEFAFAPPAIACFIGAYCESLFPVG--------PGWLAALVFYIVFI-GINILGVGEAAKLEFVVTA 152 (442)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------chhHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHH
Confidence 9888 888888888777777778888888877665421 11222222222211 2223456666666655444
Q ss_pred HHHHHHHHHhhheeeeccCCCcc-cccc--ccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCCchH
Q 013039 196 MSLSYSTIAWSASVRKGVQPDVA-YGYK--AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRG 272 (451)
Q Consensus 196 ~~v~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~~ 272 (451)
..+..+++.+.....+....+.. .... ....+.++.++..++...+|+|.|++.+....+|+ |||+|+ ++|+
T Consensus 153 ~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r~-ipra 227 (442)
T TIGR00908 153 VAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEET----KNPKRD-IPRG 227 (442)
T ss_pred HHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcccc-cCHH
Confidence 33332222221111111111100 0000 01113345678889999999999999999999999 999887 9999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccC----cchhH---HhhC-CCChhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHh
Q 013039 273 VVVAYIVVALCYFPVALIGYWMFGN----KVEDN---ILLS-LEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLL 344 (451)
Q Consensus 273 ~~~~~~~~~~~Y~~~~~~gy~~fg~----~~~~~---il~~-~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~ 344 (451)
+..+..++.++|..........-+. +..++ .... +++..+...+..+..++..+.+..-......+.+....
T Consensus 228 i~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~a 307 (442)
T TIGR00908 228 LIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALS 307 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888775543221110 01111 1111 12223344444444455555444444444455555444
Q ss_pred hhc--------cCCCchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcC
Q 013039 345 VKK--------LNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP 408 (451)
Q Consensus 345 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~ 408 (451)
+++ .| +.+.+.+.......+.. ++. ...+.+.+.++.+ ....+.|+++.+.+++.|++
T Consensus 308 rdg~lP~~~~~~~-~~~~P~~Ail~~~~i~~--~~~-l~~~~~~l~~~~~--~~~~~~y~~~~~a~i~lr~~ 373 (442)
T TIGR00908 308 RAGYLPESLSKVN-RKKAPVLAIVVPGVIGF--GLS-LTGQTALIILVSV--FGAIISYVLSMAAHFTLRIR 373 (442)
T ss_pred hcCCccHHHHHhC-CCCCcHHHHHHHHHHHH--HHH-HhccHHHHHHHHH--HHHHHHHHHHHHHHHHHHhc
Confidence 322 12 33344444433322222 111 2234444444432 34567888888888877654
No 38
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.74 E-value=5.8e-15 Score=149.06 Aligned_cols=352 Identities=12% Similarity=0.107 Sum_probs=205.6
Q ss_pred cccCCChHHHHHHHHHhhhhccccccHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~ 113 (451)
+.+|+.+.++..+..+++++|+|++.+|.. .+.+|. ..++..++.+++....+..+.|...+.|..+ +..+++++.
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~G--g~y~y~~~~ 82 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAAS--SFSRYAQEN 82 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Confidence 357889999999999999999999999865 566675 3677788888898999999999998888766 888899999
Q ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 013039 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (451)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 193 (451)
+||.+| ++..+..++.....+.......+.++..+.+ +.....+.+.+.++ .-....++.+....++...
T Consensus 83 ~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l-~~~ln~~gv~~~~~~~~~~ 152 (457)
T PRK10580 83 LGPLAG-YITGWTYCFEILIVAIADVTAFGIYMGVWFP--------TVPHWIWVLSVVLI-ICAVNLMSVKVFGELEFWF 152 (457)
T ss_pred cCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CCChHHHHHHHHHH-HHHHHHccchhHHHHHHHH
Confidence 999888 8888887766655555544555555544332 11122232222222 2222334566666655443
Q ss_pred HHHHHHHHHHHh-------hheeeec-cCCCccccccc-cCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCC
Q 013039 194 AVMSLSYSTIAW-------SASVRKG-VQPDVAYGYKA-KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKP 264 (451)
Q Consensus 194 ~~~~v~~~~~~~-------~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p 264 (451)
....+..+++++ .....+. ...+.+..+++ ...+.++.++..++....|+|.|.+......+|+ |||
T Consensus 153 ~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~----knP 228 (457)
T PRK10580 153 SFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA----KDP 228 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh----cCh
Confidence 332222111111 1111111 11111111111 1124456688899999999999999999999999 999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhhhhhccC-cc---hh---HHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHH
Q 013039 265 SKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN-KV---ED---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVF 337 (451)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~-~~---~~---~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~ 337 (451)
+|+ .++++..+...+.++|...........+. +. .+ ...+.... .+...+..+...++.+.+.........
T Consensus 229 ~k~-iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~s 306 (457)
T PRK10580 229 EKS-IPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGI-TFAASILNFVVLTASLSAINSDVFGVG 306 (457)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887 89999988888888887776554322221 11 11 11222322 234445555555555555544444444
Q ss_pred HHHHHHhhhc--------cCCCchhHHHHHHHHHHH-HHHHHHHHhccc--hhhhhhhhhhhhhhhhHHHHHHHHHHHHh
Q 013039 338 DMIETLLVKK--------LNFSPTRLLRFVVRNLYV-ASTMFIGITFPF--FGGLLGFFGGFAFAPTTYFLPCIIWLAIY 406 (451)
Q Consensus 338 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~la~~v~~--~~~i~~~~G~~~~~~~~~i~P~l~~l~~~ 406 (451)
+.+....+++ .++ .+.+.+.+...... ....++....|+ +..+.++.+ ....+.|+++.+.+++.|
T Consensus 307 R~~~~~ardg~lP~~~~kv~~-~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~lr 383 (457)
T PRK10580 307 RMLHGMAEQGSAPKIFSKTSR-RGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLAT--FATVWVWIMILLSQIAFR 383 (457)
T ss_pred HHHHHHHhCCCcCHHHHhhCC-CCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 5444443322 122 23344443322221 111122222232 233333322 235578899998888877
Q ss_pred cC
Q 013039 407 KP 408 (451)
Q Consensus 407 ~~ 408 (451)
|+
T Consensus 384 ~~ 385 (457)
T PRK10580 384 RR 385 (457)
T ss_pred HH
Confidence 54
No 39
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.72 E-value=7e-15 Score=149.53 Aligned_cols=350 Identities=14% Similarity=0.125 Sum_probs=209.8
Q ss_pred cCCChHHHHHHHHHhhhhccccccHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCccCCHHHHHHHHh
Q 013039 37 SRNAKWWYSAFHNVTAMVGAGVLSLP-YAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVP-GKRFDRYHELGQHAF 114 (451)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP-~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~-~~~~~sy~~~~~~~~ 114 (451)
+|+.+.++.....++.++|+|++..| .+.+.+|....++..++.+++.......+.|.+.+.| ..+ .|.+.+++.+
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG--~~~~~~~~~~ 78 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG--SFATYASRFV 78 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHc
Confidence 47789999999999999999999987 5667777443456688888899999999999988888 444 7889999999
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 013039 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (451)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 194 (451)
|+++| ++..+..++.....+.+.....+..+..+.+ ......+..+..++ .-+...++.+..++++....
T Consensus 79 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~in~~gv~~~~~~~~~~~ 148 (478)
T TIGR00913 79 DPAFG-FAVGWNYWLQWLIVLPLELVTASMTIQYWTD--------KVNPAVWIAIFYVF-IVIINLFGVKGYGEAEFWFS 148 (478)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------CCCHHHHHHHHHHH-HHHHHHhcchHHHHHHHHHH
Confidence 99888 8888888887777666677666666654321 11222333222222 22223446666666665444
Q ss_pred HHHHHHHH---HHhhheeeecc-CCC-ccc-cc---cccCcc---cchhhHHHHhhhHhhhcccceeecccccccccCCC
Q 013039 195 VMSLSYST---IAWSASVRKGV-QPD-VAY-GY---KAKTAA---GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPE 262 (451)
Q Consensus 195 ~~~v~~~~---~~~~~~~~~~~-~~~-~~~-~~---~~~~~~---~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~ 262 (451)
...+..++ ++.+.....+. .++ ... .+ ...++. ..+.++..++....|+|.|.+......+|+ |
T Consensus 149 ~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k 224 (478)
T TIGR00913 149 SIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEA----A 224 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhh----c
Confidence 32221111 11111111111 000 000 00 001101 125678889999999999999999999999 9
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhccCcch-------------hH---HhhCCCChhHHHHHHHHHHHHHHH
Q 013039 263 KPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE-------------DN---ILLSLEKPTWLIVMANFFVVVHVI 326 (451)
Q Consensus 263 ~p~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~~-------------~~---il~~~~~~~~~~~~~~~~~~i~~~ 326 (451)
||+|+ ++|++..+...+.++|++.........+.+.. .+ ...+.. ..+...+..++.+++.+
T Consensus 225 nP~r~-iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g-~~~~~~~~~~~~~~s~~ 302 (478)
T TIGR00913 225 NPRKS-IPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHG-IKVLPHIFNAVILISVL 302 (478)
T ss_pred ChhhH-HHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcC-CchHhHHHHHHHHHHHH
Confidence 99887 99999999999999999876543222221110 11 112222 13444556666666766
Q ss_pred hhhccccccHHHHHHHHhhhcc--------CCCchhHHHHHHHHHHHHHHHHHHHhc---cchhhhhhhhhhhhhhhhHH
Q 013039 327 GSYQIYAMPVFDMIETLLVKKL--------NFSPTRLLRFVVRNLYVASTMFIGITF---PFFGGLLGFFGGFAFAPTTY 395 (451)
Q Consensus 327 ~s~pl~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~la~~v---~~~~~i~~~~G~~~~~~~~~ 395 (451)
.+..-......+.+....+++. + +++.+.+.+.....+....++.... ..++.+.++.+ ....+.|
T Consensus 303 ~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~--~~~~i~y 379 (478)
T TIGR00913 303 SAANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISG--LSGFFTW 379 (478)
T ss_pred HHHHhhHHHHHHHHHHHHhCCcccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH--HHHHHHH
Confidence 6665555555555555543321 2 2234444444333322211111110 12444555433 3456888
Q ss_pred HHHHHHHHHHhc
Q 013039 396 FLPCIIWLAIYK 407 (451)
Q Consensus 396 i~P~l~~l~~~~ 407 (451)
+++.+.+++.+|
T Consensus 380 ~~~~~~~i~~r~ 391 (478)
T TIGR00913 380 MCICLSHIRFRK 391 (478)
T ss_pred HHHHHHHHHHHH
Confidence 999988888765
No 40
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.69 E-value=1.5e-14 Score=145.10 Aligned_cols=351 Identities=13% Similarity=0.158 Sum_probs=218.2
Q ss_pred ChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHhhhhcCCCccCCHHHHHHHHhcccc
Q 013039 40 AKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIIT-LYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKL 118 (451)
Q Consensus 40 ~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~-~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~~~ 118 (451)
.|+++++...++.++|+|++..| .....|.. .++..++.+.+. ......+.|.+.+.|+++ ...+..++.+||++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~G--G~y~~~~~~~g~~~ 76 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAG--GIYVWVSRAFGPFW 76 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSST--THHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcC--eeeehhhhcccccc
Confidence 47899999999999999999999 66666654 666666666665 678888899887788776 89999999999998
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 013039 119 GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSL 198 (451)
Q Consensus 119 g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~v 198 (451)
| ++..+..++.......++.....+++...+..... ...+. .....+..++..-....++.|..++++.....+.+
T Consensus 77 g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i 152 (426)
T PF13520_consen 77 G-FIVGWLYWVAYILSLASVASSFASYLLSLFGPDLN--PSPWP-QFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKI 152 (426)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGT--CSHHH-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred h-hcccceeEEEeeccccccccchhhhhhhccccccc--cccch-heeeeecccccceEeeechhhhhhhhhhhhhhhhh
Confidence 8 88888888887777777777777766555432110 00011 11111222222333334578888888777776655
Q ss_pred -HHHHHHhhheeeeccCCCccc--cccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCCchHHHH
Q 013039 199 -SYSTIAWSASVRKGVQPDVAY--GYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVV 275 (451)
Q Consensus 199 -~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~~~~~ 275 (451)
..++++++..+.....+.... .......+..+..+..+++..+|+|.|.+..+...+|+ || | +.+|++..
T Consensus 153 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~----k~--k-~ip~ai~~ 225 (426)
T PF13520_consen 153 VIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEEN----KN--K-TIPRAIII 225 (426)
T ss_dssp HHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGS----SS--H-HHHHHHHH
T ss_pred hhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccc----cc--h-hheeeccc
Confidence 233333332333222111110 00111223455568999999999999999999999998 55 3 48899999
Q ss_pred HHHHHHHHHHHHHhhhhhhccCcchh---H-------HhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHhh
Q 013039 276 AYIVVALCYFPVALIGYWMFGNKVED---N-------ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLV 345 (451)
Q Consensus 276 ~~~~~~~~Y~~~~~~gy~~fg~~~~~---~-------il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~ 345 (451)
+..++.++|.+.........+++..+ + +.+... +++...+..+...+..+.+.........+.+..+.+
T Consensus 226 ~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~ 304 (426)
T PF13520_consen 226 SIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVG-GSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMAR 304 (426)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHH-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccc-ccccccccccccccccccccchhhcchhhccccccc
Confidence 99999999999987766666542211 1 111111 235666777777788888887777777777777665
Q ss_pred hcc--------CCCchhHHHHHHHHHHHHHHHHHHH-hcc--chhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCC
Q 013039 346 KKL--------NFSPTRLLRFVVRNLYVASTMFIGI-TFP--FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR 409 (451)
Q Consensus 346 ~~~--------~~~~~~~~~~~~~~~~~~~~~~la~-~v~--~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~ 409 (451)
++. | +.+.+.+.......+.....+.. ..| ++..+.+... ....+.|+++.+.+++.++++
T Consensus 305 d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 376 (426)
T PF13520_consen 305 DGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSS--VGYLISYILVILAVLFLRRKR 376 (426)
T ss_dssp TTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHH--HHTHHHHHHHHHHHHHTHHHS
T ss_pred ccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhc
Confidence 432 2 23334444333333322222222 223 3555555433 345577777777766665543
No 41
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.69 E-value=2.1e-14 Score=144.27 Aligned_cols=337 Identities=14% Similarity=0.124 Sum_probs=207.6
Q ss_pred HHhhhhccccccHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhcccccchhhHHHH
Q 013039 49 NVTAMVGAGVLSLPY-AMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQ 127 (451)
Q Consensus 49 l~~~~iG~GiL~lP~-a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~~~g~~~~~~~~ 127 (451)
.++++||+|++..|. +.++.|. ..++..++.+++....+..+.|...+.|.++ +..+.+++.+||++| +++.+..
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~G--g~y~y~~~~~G~~~g-f~~gw~~ 78 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTG--SFSTYADKAIGRWAG-YTIGWLY 78 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHcChHHH-HHHHHHH
Confidence 468899999999996 6778885 4777788899999999999999998888876 899999999999888 8888888
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 013039 128 LIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSA 207 (451)
Q Consensus 128 ~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~v~~~~~~~~~ 207 (451)
++.............+..+..+.+ ......+..++.++.. +.-.++.|..+.++.......+..++.+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~-~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~ 149 (446)
T PRK10197 79 WWFWVLVIPLEANIAAMILHSWVP--------GIPIWLFSLVITLALT-GSNLLSVKNYGEFEFWLALCKVIAILAFIFL 149 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc--------cCcHHHHHHHHHHHHH-HHHHHhhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 876665555454444444433221 1111222222222221 2223456666665555544333322222211
Q ss_pred ee--eeccCC-----Ccccccc-ccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCCchHHHHHHHH
Q 013039 208 SV--RKGVQP-----DVAYGYK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIV 279 (451)
Q Consensus 208 ~~--~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~ 279 (451)
.+ ..+..+ +.++.++ +...+.++.++..++....|+|.|.+.+....+|+ |||+|+ ++|++..+...
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~----knP~r~-iPrai~~~~~~ 224 (446)
T PRK10197 150 GAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAES----DTPEKH-IVRATNSVIWR 224 (446)
T ss_pred HHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhhh-HHHHHHHHHHH
Confidence 11 111111 1111111 11124567789999999999999999999999999 999886 99999999999
Q ss_pred HHHHHHHHHhhhhhhccCcc-----h---hHHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHhhhcc---
Q 013039 280 VALCYFPVALIGYWMFGNKV-----E---DNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL--- 348 (451)
Q Consensus 280 ~~~~Y~~~~~~gy~~fg~~~-----~---~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~--- 348 (451)
+.++|++..+........+. . ......... ++...+.++..+++.+.+..-..+...+.+....+++.
T Consensus 225 i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~-~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~ 303 (446)
T PRK10197 225 ISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNI-PHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPA 303 (446)
T ss_pred HHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCH
Confidence 99999987665333322111 1 122333332 44556667777777777777767777666666554321
Q ss_pred -----CCCchhHHHHHHHHHHHHHH-HHHHHhc--cchhhhhhhhhhhhhhhhHHHHHHHHHHHHhc
Q 013039 349 -----NFSPTRLLRFVVRNLYVAST-MFIGITF--PFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYK 407 (451)
Q Consensus 349 -----~~~~~~~~~~~~~~~~~~~~-~~la~~v--~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~ 407 (451)
+ +.+.+.+.+......... .+..... ..++.+.++.+... .+.|.++.+.+++.||
T Consensus 304 ~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 304 VMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRK 367 (446)
T ss_pred HHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 2 223444444333222222 2222212 23667777766444 4888888888888765
No 42
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.67 E-value=2.5e-14 Score=139.98 Aligned_cols=337 Identities=15% Similarity=0.189 Sum_probs=211.1
Q ss_pred CCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhccc
Q 013039 38 RNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEK 117 (451)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~~ 117 (451)
++.|.+|..+.++++++|+|++.+|....+.+-..+++..++.++.......++.+...++|++ +..|+.++.+||+
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~---~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK---NFSEILSKYLGKI 77 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhhHH
Confidence 3688899999999999999999999987765555678888889999999999999999888864 8999999999998
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 013039 118 LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMS 197 (451)
Q Consensus 118 ~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 197 (451)
.| .+..+.................++.+..... + +.. .....+..++..-....++++...+++.+.....
T Consensus 78 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~----~tp-~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~ 148 (359)
T TIGR00912 78 LG-RLLSILFILYFFLIAAYLIRIFADFIKTYLL---P----RTP-IIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIF 148 (359)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C----CCC-HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 77 6666666666665555555555555543321 1 111 2222222222222334568999998888877755
Q ss_pred HHH-HHHHhhheeeeccCCCccccccccCcccchhhHHHHhh-hHhhhcccceeecccccccccCCCCCCCCCCchHHHH
Q 013039 198 LSY-STIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALG-DVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVV 275 (451)
Q Consensus 198 v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~~~~~ 275 (451)
+.. ++++........+.++..+- .+.++.++..+.- ...++|.+.+.+....+++ |||++ .+|....
T Consensus 149 i~~~~~il~~~~~~~~~~~~l~P~-----~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~----~~~~~--~~k~~~~ 217 (359)
T TIGR00912 149 LILFILVLILLAPKLGNIKNLLPV-----LENGLSPILKGAYPVVTFAFGEIEIFFLLFPLL----SKKKK--IKKSIIK 217 (359)
T ss_pred HHHHHHHHHHHhcccccHHHccCc-----cccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHh----CChhh--hHHHHHH
Confidence 543 22222222222112222211 1345666666554 8889999999988899988 66654 6699999
Q ss_pred HHHHHHHHHHHHHhhhhhhccCcchh-------HHhhCCCChh---HHHHHHHHHHHHHHHhhhccccccHHHHHHHHhh
Q 013039 276 AYIVVALCYFPVALIGYWMFGNKVED-------NILLSLEKPT---WLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLV 345 (451)
Q Consensus 276 ~~~~~~~~Y~~~~~~gy~~fg~~~~~-------~il~~~~~~~---~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~ 345 (451)
+..++.++|..........+|.+..+ .......-++ ..-.+.-.......+...-+..+.....+.+.++
T Consensus 218 ~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~ 297 (359)
T TIGR00912 218 AIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFK 297 (359)
T ss_pred HHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999988888888754322 1111121111 1223344555566667777777888888888876
Q ss_pred hccCCCchhHHHHHHHHHHHHHHHHHHHhccc-hhh---hhhhhhhhhhhhhHHHHHHHHHHHHhc
Q 013039 346 KKLNFSPTRLLRFVVRNLYVASTMFIGITFPF-FGG---LLGFFGGFAFAPTTYFLPCIIWLAIYK 407 (451)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~-~~~---i~~~~G~~~~~~~~~i~P~l~~l~~~~ 407 (451)
.+.++. ....... ....++. .|+ .+. ..+..+ ..+....+++|.++.+...-
T Consensus 298 ~~~~~~------~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~P~ll~~i~~i 353 (359)
T TIGR00912 298 KRKYSI------LILPVLM--VIFSISF-FPDSSNQLFDYLEFLP-IIAIVFFLLLPLILFIIVKI 353 (359)
T ss_pred CCCcch------hHHHHHH--HHHHHHH-ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 553221 1111111 2222222 344 322 112222 23345667789987776543
No 43
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.66 E-value=1.7e-13 Score=139.12 Aligned_cols=359 Identities=14% Similarity=0.174 Sum_probs=226.1
Q ss_pred cccCCChHHH-HHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHH
Q 013039 35 TSSRNAKWWY-SAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (451)
Q Consensus 35 ~~~~~~s~~~-~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~ 113 (451)
+.+|+.+.++ ......+.++|.|++.+|......+ ....+..++.+++....+..+.|.+.+.|+.+ .+.+.+++.
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--G~y~~~~~~ 85 (466)
T COG0531 9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAG--GAYAYAKRA 85 (466)
T ss_pred hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--Ceeeehhhh
Confidence 4567778788 8899999999999999998877665 22333356666666667888999888888877 889999999
Q ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHH--HHHHHHhcCCCchhHHHHHH
Q 013039 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFA--SVHFVLSHLPNFNAIAGVSL 191 (451)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~--~i~~pl~~~~~l~~l~~~s~ 191 (451)
+|++.| ++..+..++.......+........+..+++.... .......+..+.. ...+-+.-.++.+...++..
T Consensus 86 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~ 161 (466)
T COG0531 86 LGPRLG-FLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGL---LSIGPLLIILIALALIALLTLLNLRGIKASAKINS 161 (466)
T ss_pred cCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh---hcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999888 88888888888888888888887766666653110 0001012222222 22223334567888888777
Q ss_pred HHHHHHHHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCCch
Q 013039 192 AAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWR 271 (451)
Q Consensus 192 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~ 271 (451)
+.....+..++++.+....+.............+....+..+..++....++|.|.+.+....+|+ |||+|+ ++|
T Consensus 162 ~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~----knp~r~-ip~ 236 (466)
T COG0531 162 IITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEV----KNPKRT-IPR 236 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHh----cCcccc-ccH
Confidence 777766655544444333332221111010000022344578999999999999999999999999 889877 899
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCc-ch--------hHHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHHH
Q 013039 272 GVVVAYIVVALCYFPVALIGYWMFGNK-VE--------DNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIET 342 (451)
Q Consensus 272 ~~~~~~~~~~~~Y~~~~~~gy~~fg~~-~~--------~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~ 342 (451)
++..++..+.++|++.........+++ .. .+...... +.+...+..+...++.+.+.........+.+..
T Consensus 237 aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~ 315 (466)
T COG0531 237 AIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGG-GNWGAIIIAILALLSLFGSLLAWILAVSRVLYA 315 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988877666542 11 11111222 135566667777777777765555444444444
Q ss_pred Hhhhc--------cCCCchhHHHHHHHHHHHHHHHHHHHh--ccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcC
Q 013039 343 LLVKK--------LNFSPTRLLRFVVRNLYVASTMFIGIT--FPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP 408 (451)
Q Consensus 343 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~la~~--v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~ 408 (451)
+.+++ .+++.+.+.+......++...+.+... ...++.+.++. .....+.|.++.+..++.+++
T Consensus 316 ~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~--~~~~~~~y~~~~~~~~~~~~~ 389 (466)
T COG0531 316 MARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLA--SVAFLIAYLLVALALLVLRRK 389 (466)
T ss_pred HHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 43322 133333444444443333331111111 11244555553 345568889998888887765
No 44
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.65 E-value=6.9e-13 Score=129.67 Aligned_cols=354 Identities=14% Similarity=0.157 Sum_probs=250.9
Q ss_pred cccCCChHHHHHHHHHhhhhccc-cccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~ 113 (451)
+.+|+...+.-.+.-++..||+| .++...+.+++|....++..+++|.+.+..+..+.|.+...|..+ ++..++.+.
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sG--sF~~ya~rf 118 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSG--SFSTYATRF 118 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--chhhhhhhh
Confidence 46788999999999999999999 556789999999997888899999999999999999998888665 799999999
Q ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHH--hcCCCchhHH-HHH
Q 013039 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVL--SHLPNFNAIA-GVS 190 (451)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl--~~~~~l~~l~-~~s 190 (451)
.+|-+| +...+.+++....++..-++..+..++.+.+.. .+...|..++.++++.+ .-.|...... ++|
T Consensus 119 vdpa~G-Fa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~-------v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s 190 (541)
T COG0833 119 VDPAFG-FALGWNYWLNWAVTLPLELTAASLVIQYWFPDT-------VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFS 190 (541)
T ss_pred cCchHH-HHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC-------CChHHHHHHHHHHHHHHHHhcccccceehHHHH
Confidence 999899 999999999999999999999999988887532 34467777776655444 3456666655 444
Q ss_pred HHHHHHHHHHHHHHhhheeeeccCCC-----ccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCC
Q 013039 191 LAAAVMSLSYSTIAWSASVRKGVQPD-----VAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (451)
Q Consensus 191 ~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~ 265 (451)
.+-++..+.++++-++... |..++ .++--.+.+-++++.++...+-+..|||.|-+.+--...|- +||+
T Consensus 191 ~iKV~~ii~Fii~gii~~~--Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs----~nP~ 264 (541)
T COG0833 191 SIKVLTIIGFIILGIIIIC--GGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGES----ENPR 264 (541)
T ss_pred HHHHHHHHHHHHHHHHHhc--CCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeeccc----CCch
Confidence 4444443333322222111 11111 11111122345678899999999999999999999999999 9998
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhh-hhh-hccCc----------chhHHhhCCCC--hhHHHHHHHHHHHHHHHhhhcc
Q 013039 266 KGPMWRGVVVAYIVVALCYFPVALI-GYW-MFGNK----------VEDNILLSLEK--PTWLIVMANFFVVVHVIGSYQI 331 (451)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~Y~~~~~~-gy~-~fg~~----------~~~~il~~~~~--~~~~~~~~~~~~~i~~~~s~pl 331 (451)
|. +||++.-.+-=..++|++.-++ |.+ .+.|. ..++....+.+ -..+..+.+...+++++++-.-
T Consensus 265 K~-iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS 343 (541)
T COG0833 265 KS-IPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANS 343 (541)
T ss_pred hh-hHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhc
Confidence 87 9999998888888888776543 222 22220 11122222211 2345667888999999999998
Q ss_pred ccccHHHHHHHHhhhccC-------CCchhHHHHHHHHHHHHHHHHHHHhcc---chhhhhhhhhhhhhhhhHHHHHHHH
Q 013039 332 YAMPVFDMIETLLVKKLN-------FSPTRLLRFVVRNLYVASTMFIGITFP---FFGGLLGFFGGFAFAPTTYFLPCII 401 (451)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~la~~v~---~~~~i~~~~G~~~~~~~~~i~P~l~ 401 (451)
.++...+.+..+.+++.. .+++++...+..+..+.+..+++...+ .+..++++.|.. .+++.+--++.
T Consensus 344 ~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s--~~i~W~~I~~s 421 (541)
T COG0833 344 GLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLS--GFIAWGSICLS 421 (541)
T ss_pred cchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 999999999998876541 234556555555555555444444432 366777777643 45667777788
Q ss_pred HHHHhc
Q 013039 402 WLAIYK 407 (451)
Q Consensus 402 ~l~~~~ 407 (451)
|+|.||
T Consensus 422 hirFR~ 427 (541)
T COG0833 422 HIRFRR 427 (541)
T ss_pred HHHHHH
Confidence 887765
No 45
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.56 E-value=3.4e-11 Score=122.31 Aligned_cols=253 Identities=11% Similarity=0.008 Sum_probs=153.7
Q ss_pred cccCCChHHHHHHHHHhhh-hccccccHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAM-VGAGVLSLPY-AMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~-iG~GiL~lP~-a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~ 112 (451)
+.+|+.+.++.+..-++.+ +|.|+..+|. +....|- ..+...++.++.....+..+.|...++|..+ .....+++
T Consensus 10 ~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aG--G~Y~~~~~ 86 (475)
T TIGR03428 10 QLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISG--AIYQWSRR 86 (475)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--CHHHHHHH
Confidence 3578899999999999885 8999999885 4556665 3555577788888889999999998899876 88889999
Q ss_pred HhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhc-CCCCCc----c--hhhHHHHHHHHHHHHhcCCCchh
Q 013039 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCK-EPCKEI----K--LSYFIMIFASVHFVLSHLPNFNA 185 (451)
Q Consensus 113 ~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~-~~~~~~----~--~~~~~~i~~~i~~pl~~~~~l~~ 185 (451)
.+||++| ++..+..++................+..+.+.... ....++ . +.....+..++..-+...+..|.
T Consensus 87 ~~g~~~g-f~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~ 165 (475)
T TIGR03428 87 MGGEVIG-WFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEW 165 (475)
T ss_pred HcCcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 9999888 88888777765544444444444444333221110 000011 0 01111111111222223345666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheeeeccC-CCccccccccCcccc-hhhHHHHhhhHhhhcccceeecccccccccCCCC
Q 013039 186 IAGVSLAAAVMSLSYSTIAWSASVRKGVQ-PDVAYGYKAKTAAGT-VFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEK 263 (451)
Q Consensus 186 l~~~s~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~ 263 (451)
..+++.+.....+..++++++........ +.............+ ...+..+.....|+|.|.+.+....+|+ ||
T Consensus 166 ~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~----kn 241 (475)
T TIGR03428 166 MSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEET----KN 241 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHh----cC
Confidence 66666665554333222222222211111 100000000011112 2345567777889999999999999999 99
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHhhhhhhcc
Q 013039 264 PSKGPMWRGVVVAYIVVALCYFPVALIGYWMFG 296 (451)
Q Consensus 264 p~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg 296 (451)
|+|. .+|++..+..+..++|.+..+......+
T Consensus 242 P~r~-iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 242 PRRV-APRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred cchh-hhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9887 9999999999888766665554444333
No 46
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.54 E-value=3.3e-13 Score=136.19 Aligned_cols=359 Identities=11% Similarity=0.044 Sum_probs=232.4
Q ss_pred ccccCCChHHHHHHHHHhhhhccccccH-HHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-ccCCHHHHHH
Q 013039 34 ITSSRNAKWWYSAFHNVTAMVGAGVLSL-PYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGK-RFDRYHELGQ 111 (451)
Q Consensus 34 ~~~~~~~s~~~~~~~l~~~~iG~GiL~l-P~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~-~~~sy~~~~~ 111 (451)
.+.+|+.+.+.-.+.-+++++|+|++-. ..+.++.|-..-++..++.+...+.++..+.|.+.+.|.. + ++..+++
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aG--s~~~ya~ 103 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAG--SFYTYAY 103 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccc--cceeeee
Confidence 3568999999999999999999998776 6778888877666668888999999999999999989973 5 7888899
Q ss_pred HHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhc--CCCCCcchhhHHHH--HHHHHHHHhcCCCchhHH
Q 013039 112 HAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCK--EPCKEIKLSYFIMI--FASVHFVLSHLPNFNAIA 187 (451)
Q Consensus 112 ~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~i--~~~i~~pl~~~~~l~~l~ 187 (451)
+..|+-+| +++.+-+++.....+.+.+...+.+++.+.. ... ..-++.+...|..+ ..++++.+...+-....+
T Consensus 104 ~~i~e~~a-F~~gWny~l~y~i~~a~e~~a~s~~~~~w~~-~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~e 181 (554)
T KOG1286|consen 104 RFVGESLA-FAIGWNYLLEYVIGLAAEARAWSSYLDYWTG-ASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVE 181 (554)
T ss_pred eeeCcHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-cccccccccCCCCCccHHHHHHHHHHHHHHHHhhcccee
Confidence 99999899 9999999999999999999999999999861 000 00011122222222 222333333334333333
Q ss_pred HHHHHHHHH---HHHHHHHHhhheeeeccCCCcc--ccc--cccCcccchhhHHHHhhhHhhhcccceeecccccccccC
Q 013039 188 GVSLAAAVM---SLSYSTIAWSASVRKGVQPDVA--YGY--KAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPST 260 (451)
Q Consensus 188 ~~s~~~~~~---~v~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~ 260 (451)
+......++ .++.+.+++.......+..+.. ..+ +....+.++.++..++....|+|.|.+.+-...+|-
T Consensus 182 f~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~--- 258 (554)
T KOG1286|consen 182 FSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEA--- 258 (554)
T ss_pred ehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhc---
Confidence 333333222 2222222222222211110110 001 111234458899999999999999999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhh--ccC-cchh------HHhhCCCChhHHHH---HHHHHHHHHHHhh
Q 013039 261 PEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWM--FGN-KVED------NILLSLEKPTWLIV---MANFFVVVHVIGS 328 (451)
Q Consensus 261 ~~~p~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~--fg~-~~~~------~il~~~~~~~~~~~---~~~~~~~i~~~~s 328 (451)
|||+|. +++++..++..++++|++..+.--+. |.| +..+ ....... ..+... +.+++.++.++++
T Consensus 259 -kNP~k~-IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~-~~~~k~~~~ivna~iL~~~~s~ 335 (554)
T KOG1286|consen 259 -KNPRKA-IPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIG-NAGAKYLPHIVNAGILIGLLSS 335 (554)
T ss_pred -cCCccc-ccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHh-ccCccccchhhhHHHHHHHHHH
Confidence 999877 99999999999999999987663222 212 0111 1110111 122334 8889999999999
Q ss_pred hccccccHHHHHHHHhhhcc--------CCCchhHHHHHHHHHHHHHHHHHHHhcc-----chhhhhhhhhhhhhhhhHH
Q 013039 329 YQIYAMPVFDMIETLLVKKL--------NFSPTRLLRFVVRNLYVASTMFIGITFP-----FFGGLLGFFGGFAFAPTTY 395 (451)
Q Consensus 329 ~pl~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~la~~v~-----~~~~i~~~~G~~~~~~~~~ 395 (451)
....+++.-+.+..+.+.+. +++ +++.... .+..+...++++..+ .++.+.++.|. ++.+.+
T Consensus 336 ~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~--~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si--~tl~~w 410 (554)
T KOG1286|consen 336 LNSSLYAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAV--LVSGLFGALAALNFSLGAATVFNWLVNLSSI--GTLFAW 410 (554)
T ss_pred HHHHhHHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHH--HHHHHHHHHHHHHhccccchHHHHHHHHHhH--HHHHHH
Confidence 99999999998888866543 112 3333332 233333333333332 25778887663 455667
Q ss_pred HHHHHHHHHHhc
Q 013039 396 FLPCIIWLAIYK 407 (451)
Q Consensus 396 i~P~l~~l~~~~ 407 (451)
.+=++++++.|+
T Consensus 411 ~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 411 TLVALSHLRFRY 422 (554)
T ss_pred HHHHHHHeeeee
Confidence 777777777665
No 47
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.53 E-value=4.5e-11 Score=121.72 Aligned_cols=362 Identities=12% Similarity=0.014 Sum_probs=189.1
Q ss_pred ccCCChHHHHHHHHHhhhhc--cccccH-HHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHH
Q 013039 36 SSRNAKWWYSAFHNVTAMVG--AGVLSL-PYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (451)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG--~GiL~l-P~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~ 112 (451)
.+|+.+.++.+...++. +| .|+... +.+..+.|....+...++.+++....+..+.|...+.|..+ +....+++
T Consensus 10 l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~G--g~y~~~~~ 86 (482)
T TIGR00907 10 LKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSG--GQYFWSAK 86 (482)
T ss_pred eecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCc--cHHHHHHH
Confidence 56789999988888874 44 565444 45677777654566688888999999999999988888876 88899999
Q ss_pred Hhcccccch---hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHH--HHHHHHhcCCCchhHH
Q 013039 113 AFGEKLGLY---IVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFA--SVHFVLSHLPNFNAIA 187 (451)
Q Consensus 113 ~~G~~~g~~---~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~--~i~~pl~~~~~l~~l~ 187 (451)
++|+++|+. +..+..++.....+.+.....++++........+......++.....+.. +..+-+...+..|...
T Consensus 87 ~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~~ 166 (482)
T TIGR00907 87 LAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPTKWLP 166 (482)
T ss_pred hcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhHhHHH
Confidence 998766543 44444544444444445555555555444322111000011111112221 1112222233455555
Q ss_pred HHHHHHHHHHHHHHHHHhhheeeeccC--CCccccccccC-----cccchhhHHHHhhhHhhhcccceeecccccccccC
Q 013039 188 GVSLAAAVMSLSYSTIAWSASVRKGVQ--PDVAYGYKAKT-----AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPST 260 (451)
Q Consensus 188 ~~s~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~ 260 (451)
+++.+.....+...+++.+.....+.. ++.+....+.. +..+...+..++....|+|.|.+......+|+
T Consensus 167 ~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~--- 243 (482)
T TIGR00907 167 RITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEI--- 243 (482)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhc---
Confidence 555444433332222111111111110 11111111000 01111245566666789999999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhccCc------ch-h---HHhhC-CCChhHHHHHHHHHHHHHHHhhh
Q 013039 261 PEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK------VE-D---NILLS-LEKPTWLIVMANFFVVVHVIGSY 329 (451)
Q Consensus 261 ~~~p~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~------~~-~---~il~~-~~~~~~~~~~~~~~~~i~~~~s~ 329 (451)
|||+|+ ++|++..+..+..++|.+..+.-+...+|. .. + .+..+ +.. ++...+......+..+.+.
T Consensus 244 -knP~r~-iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~ 320 (482)
T TIGR00907 244 -ENPEVV-GPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGN-KAGAIFLLCLILVTSFFCA 320 (482)
T ss_pred -CChhhh-cCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCC-chHHHHHHHHHHHHHHHHH
Confidence 999887 999999988877665444333322333221 00 1 11111 121 1333334444444444444
Q ss_pred ccccccHHHHHHHHhhhcc----------CCCchhHHHHHHHHHHHHHHHHHHHh--ccchhhhhhhhhhhhhhhhHHHH
Q 013039 330 QIYAMPVFDMIETLLVKKL----------NFSPTRLLRFVVRNLYVASTMFIGIT--FPFFGGLLGFFGGFAFAPTTYFL 397 (451)
Q Consensus 330 pl~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~la~~--v~~~~~i~~~~G~~~~~~~~~i~ 397 (451)
.-......+.+....+++. +++.+.+.+.+.....+.....+... .+.++.+.++.+ ....+.|.+
T Consensus 321 ~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~--~~~~i~y~~ 398 (482)
T TIGR00907 321 ITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCT--VALDVSYVI 398 (482)
T ss_pred HHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHH
Confidence 4444444444444433211 22223444444333322222211111 134666666644 345688999
Q ss_pred HHHHHHHHhcC
Q 013039 398 PCIIWLAIYKP 408 (451)
Q Consensus 398 P~l~~l~~~~~ 408 (451)
|...+++.+|+
T Consensus 399 ~~~~~l~~~~~ 409 (482)
T TIGR00907 399 PIICKLAKGRN 409 (482)
T ss_pred HHHHHHHhcCC
Confidence 99998876664
No 48
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.50 E-value=3.4e-11 Score=122.74 Aligned_cols=238 Identities=11% Similarity=0.017 Sum_probs=132.8
Q ss_pred ccCCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHH--HHHHHHHHhhhhcC-CCccCCHHHHHHH
Q 013039 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITL--YTLWQMVEMHEMVP-GKRFDRYHELGQH 112 (451)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~--~s~~~l~~~~~~~~-~~~~~sy~~~~~~ 112 (451)
+++|.+.++.++..+..+. ++..+| .+++.| .+.+...+++.+.+ -.+..+.|.....| .++ .....+++
T Consensus 2 ~~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G--~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G--G~y~wv~~ 74 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVL--AVYEYP-TFATSG--FHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG--GIFAWVSN 74 (507)
T ss_pred CCcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC--Ceeeehhh
Confidence 3567999999888888876 557888 466778 45555555555543 37888899877654 444 77788999
Q ss_pred HhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHH--HHHHHHhcCCCchhHHHHH
Q 013039 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFA--SVHFVLSHLPNFNAIAGVS 190 (451)
Q Consensus 113 ~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~--~i~~pl~~~~~l~~l~~~s 190 (451)
++|+++| ++..+..|+.......+........+........ . ..+.....++.. +..+-+...+..+...+++
T Consensus 75 a~G~~~G-f~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~---~-~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~ 149 (507)
T TIGR00910 75 TLGERFG-FAAIFFGWFQIAIGFIPMIYFILGALSYILKFPA---L-NEDPIIKFIAALIIFWALAFSQFGGTKRTAKIA 149 (507)
T ss_pred ccCccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch---h-ccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999 6766676765543222222212111222211100 0 001111111111 1222233345666666666
Q ss_pred HHHHHHHHHH-HH--HH-hhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCC
Q 013039 191 LAAAVMSLSY-ST--IA-WSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK 266 (451)
Q Consensus 191 ~~~~~~~v~~-~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~ 266 (451)
.++.+..+.. ++ ++ .......+.+...+.+.....+..+..+....+..++|+|.|.+......+|+ |||+|
T Consensus 150 ~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~----knP~r 225 (507)
T TIGR00910 150 KAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINEL----ENPGR 225 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHc----cCCcc
Confidence 5543322111 11 11 11111222211111111111011111123445555799999999999999999 99988
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhh
Q 013039 267 GPMWRGVVVAYIVVALCYFPVALI 290 (451)
Q Consensus 267 ~~~~~~~~~~~~~~~~~Y~~~~~~ 290 (451)
. ++|++..+..++.++|.+..+.
T Consensus 226 ~-~PrAi~~~~i~~~~l~~l~~~~ 248 (507)
T TIGR00910 226 D-YPLAMILLMIAAICLDAIGGFS 248 (507)
T ss_pred c-ccHHHHHHHHHHHHHHHHHHHH
Confidence 7 9999999999999999875543
No 49
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.48 E-value=1.3e-10 Score=118.16 Aligned_cols=353 Identities=14% Similarity=0.116 Sum_probs=176.8
Q ss_pred CCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHhhhhcCCCccCCHHHHHHHHhcc
Q 013039 38 RNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITL-YTLWQMVEMHEMVPGKRFDRYHELGQHAFGE 116 (451)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~-~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~ 116 (451)
||.+.+..+...+.+++ ++-.+|.+ ++.|.. .++..++.+++.. -.+....|.+...|+++ ...+.+++.+|+
T Consensus 1 ~~~~~~~l~~~~~~~v~--~~~~~~~~-a~~G~~-~~~~~~i~~~~~~ip~al~~aEL~~~~P~~G--G~y~~~~~a~G~ 74 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVV--SLRGLPAE-AEYGLS-AAFYYLFAAIFFLVPVSLVAAELATAWPEKG--GVFRWVGEAFGA 74 (474)
T ss_pred CcccHHHHHHHHHHHHH--HhhcchHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CceeeHhhhcCh
Confidence 35777777777776666 45555755 567743 3334444444443 47888899888888766 788999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCc--chhhHHHHHHHH--HHHHhcCCCchhHHHHHHH
Q 013039 117 KLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEI--KLSYFIMIFASV--HFVLSHLPNFNAIAGVSLA 192 (451)
Q Consensus 117 ~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~i--~~pl~~~~~l~~l~~~s~~ 192 (451)
++| ++..+..+........+-+...+..+..+.+.... .... ++.....+..++ .+-+...+++|..++++.+
T Consensus 75 ~~g-f~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~ 151 (474)
T TIGR03813 75 RWG-FLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATV--DESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKW 151 (474)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc--CcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 999 87777777665332211111111111111110000 0011 111111122221 1222345677777666654
Q ss_pred HHHHH-HHHHHHHhhhe---eeeccCCCccccccc-cCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCC
Q 013039 193 AAVMS-LSYSTIAWSAS---VRKGVQPDVAYGYKA-KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKG 267 (451)
Q Consensus 193 ~~~~~-v~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~ 267 (451)
..... ++.++++++.. ...+..+..+..+.+ .+...++..+..+. .+.|+|.|.+.+....+|+ |||+|+
T Consensus 152 ~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~----knP~r~ 226 (474)
T TIGR03813 152 GGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDV----DNPDKN 226 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhc----cCcccc
Confidence 32211 11111111111 111211111111111 11112333444333 4578999999999999999 999887
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhhhhccCcch----h------HHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHH
Q 013039 268 PMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE----D------NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVF 337 (451)
Q Consensus 268 ~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~~----~------~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~ 337 (451)
.+|++..+..++.++|++..+......+++.. + +...... .++...+..+...++.+.+....+....
T Consensus 227 -iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~i~~~~~~~~~l~~~~~~~~~~s 304 (474)
T TIGR03813 227 -YPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAG-LSWLGPILAFALAIGVLAGVVTWVAGPS 304 (474)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998876665444442211 1 1111111 1334444455555555555544433333
Q ss_pred HHHHHHhhh--------ccCCCchhHHHHHHHHHHHH-HHHHHHHhccchhhhhhhhhhh--hhhhhHHHHHHHHHHHHh
Q 013039 338 DMIETLLVK--------KLNFSPTRLLRFVVRNLYVA-STMFIGITFPFFGGLLGFFGGF--AFAPTTYFLPCIIWLAIY 406 (451)
Q Consensus 338 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~la~~v~~~~~i~~~~G~~--~~~~~~~i~P~l~~l~~~ 406 (451)
+.+....++ +.+ +.+.+.+.+.....+. +..++....|+.+..++...+. ....+.|+++.+..++.|
T Consensus 305 R~~~a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr 383 (474)
T TIGR03813 305 SGMLAVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLR 383 (474)
T ss_pred HHHHHHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333221 112 2334444443333222 2122222345544444433322 334567888877776666
Q ss_pred c
Q 013039 407 K 407 (451)
Q Consensus 407 ~ 407 (451)
+
T Consensus 384 ~ 384 (474)
T TIGR03813 384 Y 384 (474)
T ss_pred h
Confidence 4
No 50
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.47 E-value=2.7e-10 Score=116.35 Aligned_cols=245 Identities=14% Similarity=0.137 Sum_probs=139.8
Q ss_pred ccCCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHhhhhcCC-CccCCHHHHHHHH
Q 013039 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIIT-LYTLWQMVEMHEMVPG-KRFDRYHELGQHA 113 (451)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~-~~s~~~l~~~~~~~~~-~~~~sy~~~~~~~ 113 (451)
.+|+.++++.+...+++++|.+ .+|.++++.|.. +++..++.+++. .-....+.|.+.++|. ++ .-....+++
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG--G~Y~w~~~~ 79 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG--GIYSWMNKS 79 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--cHHHHHHHH
Confidence 3678999999999999999976 568888888864 555555555554 4467789999888885 45 788999999
Q ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHhhcCCC--CCcc-hhhHHHHHHH--HHHHHhcCCCchhHH
Q 013039 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHK-VHELLCKEPC--KEIK-LSYFIMIFAS--VHFVLSHLPNFNAIA 187 (451)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~-~~~~~~~~~~--~~~~-~~~~~~i~~~--i~~pl~~~~~l~~l~ 187 (451)
+||++| ++..+..+.................... .+........ ...+ .....++..+ ..+-....|..+..+
T Consensus 80 ~G~~~g-f~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~ 158 (496)
T PRK15238 80 VGPKFA-FIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIA 158 (496)
T ss_pred cCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 999999 5544443333222211111000000000 0000000000 0011 1111111111 123334467888888
Q ss_pred HHHHHHHHHHHH----HHHHHhhheeeeccC--CCcc-ccccccCcc--cchhhHHHHhhhHhhhcccceeecccccccc
Q 013039 188 GVSLAAAVMSLS----YSTIAWSASVRKGVQ--PDVA-YGYKAKTAA--GTVFNFFSALGDVAFAYAGHNVVLEIQATIP 258 (451)
Q Consensus 188 ~~s~~~~~~~v~----~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~--~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~ 258 (451)
+++.++....+. .+++........+.. ++.. ..+.+.+.+ .+..++..++....|+|.|.+.+....+|+
T Consensus 159 ~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~- 237 (496)
T PRK15238 159 KVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKT- 237 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhc-
Confidence 888665433221 111111111111111 0110 011000001 111357778888999999999999999999
Q ss_pred cCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 013039 259 STPEKPSKGPMWRGVVVAYIVVALCYFPVALIG 291 (451)
Q Consensus 259 ~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~~~g 291 (451)
|||+|+ .+|++..+...+.++|.+..+..
T Consensus 238 ---~~p~~~-~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 238 ---ENPEKN-FPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred ---cCCCcc-ccHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 99999999999999999875544
No 51
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.42 E-value=5.4e-11 Score=114.46 Aligned_cols=285 Identities=14% Similarity=0.163 Sum_probs=195.2
Q ss_pred CChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhcccc
Q 013039 39 NAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKL 118 (451)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~~~ 118 (451)
|.|.+|....+..+++|+|++.+|....+.+- .+++..++.+........++.+..+++|+. +..|+.++.+||+.
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~---~l~~~~~~~~Gk~l 76 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPGK---TLVEISEKLFGKWL 76 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhCcHH
Confidence 57889999999999999999999988665542 566677777777777888888888877765 99999999999988
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 013039 119 GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSL 198 (451)
Q Consensus 119 g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~v 198 (451)
| .+.........+......+...++.+....-. +.+ ........++..--...++++.+.+.+.+.....+
T Consensus 77 g-~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp-------~TP-~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~ 147 (320)
T PF03845_consen 77 G-KIINLLYILYFLLISALVLREFSEFIKTYLLP-------ETP-IWVIILLFLLVAAYAARKGIEVIARVAEILFPIFL 147 (320)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------cCC-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 8 66666666666666666666666666554321 111 22222333333334456789999987766666555
Q ss_pred HHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCCchHHHHHHH
Q 013039 199 SYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYI 278 (451)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~ 278 (451)
...+.+......+.+.++..|- .+.++.++..+.....+.|.+...+.-+...+ |+|++. .|....+..
T Consensus 148 i~~~~i~~~~~~~~~~~~l~P~-----~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~----~~~~~~--~k~~~~~~~ 216 (320)
T PF03845_consen 148 ILLLLILLLSIPNIDWDNLLPV-----LESGIKPILKGSLVISFPFGGIEILLFLFPFV----KDKKKL--KKSLLIAIL 216 (320)
T ss_pred HHHHHHHHHhcccCCHHHeeCc-----ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCchHH--HHHHHHHHH
Confidence 4444444444433322232222 25677889999888899999998888888888 666554 499999999
Q ss_pred HHHHHHHHHHhhhhhhccCcchh-------HHhhCCCCh---hHHHHHHHHHHHHHHHhhhccccccHHHHHHHHhhhc
Q 013039 279 VVALCYFPVALIGYWMFGNKVED-------NILLSLEKP---TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK 347 (451)
Q Consensus 279 ~~~~~Y~~~~~~gy~~fg~~~~~-------~il~~~~~~---~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~ 347 (451)
.+.++|...-+.....||.+..+ .......-+ +....+.-...........-+..+...+.+.+.++.+
T Consensus 217 ~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~ 295 (320)
T PF03845_consen 217 ISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLK 295 (320)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999888888888864322 111111111 1223344455556666777777888888888888655
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.32 E-value=8.5e-12 Score=126.93 Aligned_cols=282 Identities=14% Similarity=0.187 Sum_probs=174.5
Q ss_pred HHhhhhcccccc-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhcccccchhhHHHH
Q 013039 49 NVTAMVGAGVLS-LPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQ 127 (451)
Q Consensus 49 l~~~~iG~GiL~-lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~~~g~~~~~~~~ 127 (451)
.+++++|+|.+. .+.+..+.|.....+..++.+++....+..+.|...+.|..+ ++.+.+++.+||+.| +...+..
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~G--g~y~y~~~~lg~~~G-f~~gw~y 82 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAG--GFYAYASRGLGPALG-FAAGWAY 82 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcccc--chhhhhhhccCCcCC-ceeeHHH
Confidence 467889999665 467888888876788899999999999999999999888766 899999999999999 8888887
Q ss_pred HHHHHHHHHHHHHHhhhhHHHH--HHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHh
Q 013039 128 LIVEVGVCIVYMVTGGKSLHKV--HELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAW 205 (451)
Q Consensus 128 ~~~~~g~~~~y~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~v~~~~~~~ 205 (451)
++.............+..++.+ .+.... .+.+.. .+..++.+++..+.+ .+.+..+.+........+..++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~i~~~~~~~l~~-~gv~~~~~~~~~~~~i~~~~li~~i 158 (478)
T PF00324_consen 83 WLSYIAAIAAEATAAGSFLQFWGYFPGLPS--TWVWGI-LIAIIFILLITLLNL-FGVRVSGKIEFILTIIKLIALIAFI 158 (478)
T ss_pred HHHHHHHHHhhhhhhhhhhccccccccccc--cccccc-hhhhhhhhhhhhhhh-hhhhccchHHHHHHHHhhhHhhhhh
Confidence 7777766666666666555544 221110 011111 122333333322222 2444444433333322222222222
Q ss_pred hhe-e--eec-cCCCc-----c----ccccc---cCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCC
Q 013039 206 SAS-V--RKG-VQPDV-----A----YGYKA---KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM 269 (451)
Q Consensus 206 ~~~-~--~~~-~~~~~-----~----~~~~~---~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~ 269 (451)
+.. + ..+ ...+. + ...++ .+...++.++..++...+++|.|.+.+....+|. |||+|. +
T Consensus 159 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~----k~P~k~-I 233 (478)
T PF00324_consen 159 IVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEA----KNPRKT-I 233 (478)
T ss_pred hhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccC----CCchhh-h
Confidence 222 1 111 11111 0 00100 1122347889999999999999999999999999 899887 9
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhccCcchhH---------Hhh--CCCChhHHHHHHHHHHHHHHHhhhccccccHHH
Q 013039 270 WRGVVVAYIVVALCYFPVALIGYWMFGNKVEDN---------ILL--SLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFD 338 (451)
Q Consensus 270 ~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~~~~---------il~--~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~ 338 (451)
+|++..+...+.++|++.....-...+.+..+. ... .....++...+.+++...+.+.+..-..+...+
T Consensus 234 Pra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR 313 (478)
T PF00324_consen 234 PRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASR 313 (478)
T ss_pred hhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhcccce
Confidence 999999999999999998877655555332211 111 111224455566666666666665555555444
Q ss_pred HHHH
Q 013039 339 MIET 342 (451)
Q Consensus 339 ~~~~ 342 (451)
.+..
T Consensus 314 ~l~a 317 (478)
T PF00324_consen 314 LLYA 317 (478)
T ss_pred eehh
Confidence 4433
No 53
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.20 E-value=5.7e-08 Score=95.45 Aligned_cols=253 Identities=10% Similarity=0.070 Sum_probs=137.3
Q ss_pred ccCCChHHHHHHHHH---hhhhccccccHHHHHHhhChhHHHHH-HHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHH
Q 013039 36 SSRNAKWWYSAFHNV---TAMVGAGVLSLPYAMAQLGWGPGVAI-LILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQ 111 (451)
Q Consensus 36 ~~~~~s~~~~~~~l~---~~~iG~GiL~lP~a~~~~G~~~gii~-~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~ 111 (451)
-+|+.++++.+..-+ +..-|. .-++.+.+...|.. ++++ .++.+.+....+.-|.|.+...|..+ +..-.+.
T Consensus 46 f~R~fs~~s~fg~sFs~~g~~~~i-~tsm~~gl~~gG~~-~~vwgwlIa~~~~i~va~slaEl~Sa~PtsG--gLy~waa 121 (550)
T KOG1289|consen 46 LKREFSLFSIFGISFSLMGLLPGI-ATSMAYGLGSGGPP-TLVWGWLIAGFFSICVALSLAELCSAMPTSG--GLYFWAA 121 (550)
T ss_pred hhhhhhHHHHHHHHHHHhcchhhh-hhheeeccccCChH-HHHHHHHHHHHHHHHHHhHHHHHHhhCCCCC--cHHHHHH
Confidence 456666655443333 222211 12234444444433 5555 66677777788899999888888665 6666677
Q ss_pred HHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh-cCCCCCcchhhHHHHHHHHHHHHhc--CCCchhHHH
Q 013039 112 HAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLC-KEPCKEIKLSYFIMIFASVHFVLSH--LPNFNAIAG 188 (451)
Q Consensus 112 ~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~i~~~i~~pl~~--~~~l~~l~~ 188 (451)
+.-+||+|+.+..++-+....+-...........-..++.... .++..+.++.....+...+.+-.++ ...-+.+++
T Consensus 122 ~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~ 201 (550)
T KOG1289|consen 122 VLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLAR 201 (550)
T ss_pred HhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCcHHHHH
Confidence 7778899977666666655555333322222111111111111 1111122222222222222222222 123456666
Q ss_pred HHHHHHHHHHHHHHHHhhhe--eeeccC--CCcccccc----ccCcccchhhHHHHhhhHhhhcccceeecccccccccC
Q 013039 189 VSLAAAVMSLSYSTIAWSAS--VRKGVQ--PDVAYGYK----AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPST 260 (451)
Q Consensus 189 ~s~~~~~~~v~~~~~~~~~~--~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~ 260 (451)
++.+++...++..++..+.. ...+.. +.-+..+. ...++++...+..++-.-.+.+.|.+..+.+.+|.
T Consensus 202 I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~--- 278 (550)
T KOG1289|consen 202 INSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEET--- 278 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHh---
Confidence 66666665443333322221 122211 11111111 11223233456677888889999999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhccC
Q 013039 261 PEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN 297 (451)
Q Consensus 261 ~~~p~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~ 297 (451)
||++|. .++++..+..+.+++=..+.+.-....++
T Consensus 279 -~nAsk~-aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 279 -KNASKA-APRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred -cchhhh-ccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 899887 89999999988888877777776666665
No 54
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.08 E-value=1.1e-09 Score=92.94 Aligned_cols=213 Identities=16% Similarity=0.230 Sum_probs=143.4
Q ss_pred CChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhh------------cCCCc----
Q 013039 39 NAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM------------VPGKR---- 102 (451)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~------------~~~~~---- 102 (451)
..+-......++|-++|+|-|+||.+|+.+||.+++.++.+.+++++.+..+..|+... ..+.+
T Consensus 11 lysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~ 90 (319)
T KOG3832|consen 11 LYSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDE 90 (319)
T ss_pred hhhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccc
Confidence 34556678899999999999999999999999999999999999999999888885310 00000
Q ss_pred --------------------------------------cCCHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhh
Q 013039 103 --------------------------------------FDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGK 144 (451)
Q Consensus 103 --------------------------------------~~sy~~~~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~ 144 (451)
+...+|++...|.+ .|--+..+++++++||....|...+..
T Consensus 91 stasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnk-vgln~fyf~iiiylfgdlaiyaaavpf 169 (319)
T KOG3832|consen 91 STASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNK-VGLNFFYFAIIIYLFGDLAIYAAAVPF 169 (319)
T ss_pred cccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhhhhhhcCch
Confidence 01367788888884 887889999999999999999988776
Q ss_pred hHHHHHHHhhc-C-------CCC-----Cc--------chhhHHHHHH-HHHHHHhcCCCchhHHHHHHHHHHHHHHHHH
Q 013039 145 SLHKVHELLCK-E-------PCK-----EI--------KLSYFIMIFA-SVHFVLSHLPNFNAIAGVSLAAAVMSLSYST 202 (451)
Q Consensus 145 ~l~~~~~~~~~-~-------~~~-----~~--------~~~~~~~i~~-~i~~pl~~~~~l~~l~~~s~~~~~~~v~~~~ 202 (451)
..-++.....+ . +|. -| -++++..++. ++.+|+.+. ++++.+.++++..+.-....+
T Consensus 170 s~m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~ 248 (319)
T KOG3832|consen 170 SAMNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFI 248 (319)
T ss_pred HhhhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhcc
Confidence 66666554322 1 111 01 1233344443 345677665 788888888877775433222
Q ss_pred HHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeeccccccc
Q 013039 203 IAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATI 257 (451)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m 257 (451)
..+...-.+. .++.. +..|+....-++-..++...|+|.+|.+.|.....+
T Consensus 249 ~g~~l~tmqa-eedaa---~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gag 299 (319)
T KOG3832|consen 249 LGISLATMQA-EEDAA---AAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAG 299 (319)
T ss_pred chhhhhhhhh-ccccc---ccCCccccccccccccchhhHHHHhhccCCCCCCCC
Confidence 1111111111 11111 222333444567778899999999999999998887
No 55
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.95 E-value=1.9e-06 Score=86.75 Aligned_cols=298 Identities=15% Similarity=0.063 Sum_probs=162.8
Q ss_pred cCCChHHHHHHHHHhhhhccccccHHHHHHhh--ChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHh
Q 013039 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQL--GWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (451)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~--G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~ 114 (451)
+|+.++++-....++..+...-+......... ++.-+++..++..++...-+.+......++ + .++..+.|..|
T Consensus 11 ~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~-G---l~~~v~sR~~F 86 (442)
T TIGR00800 11 ERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKY-G---LPFPVLSRASF 86 (442)
T ss_pred cCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHh-C---CCcchhhhhhh
Confidence 34457777777777776665555555443333 344455555544444444444444443332 2 27889999999
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCC---c--chhhHHHHHHHHHHHHhcCCCchhHHHH
Q 013039 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKE---I--KLSYFIMIFASVHFVLSHLPNFNAIAGV 189 (451)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~---~--~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 189 (451)
|. .|..+..++..+...+.........++.+..+++...+..... . ....+.+++..+..++......+..++.
T Consensus 87 G~-~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~ 165 (442)
T TIGR00800 87 GI-YGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLF 165 (442)
T ss_pred hh-hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 97 4668999999999999999999999999988888765321000 0 1122333444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHhhheeee-ccCCCccccccccCcccchhhHHHHhhhHhhhccc-ceeecccccccccCCCCCCCC
Q 013039 190 SLAAAVMSLSYSTIAWSASVRK-GVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAG-HNVVLEIQATIPSTPEKPSKG 267 (451)
Q Consensus 190 s~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~-h~~~~~i~~~m~~~~~~p~~~ 267 (451)
...+....+..+.+.+...... +..+..+ .......+.....+..++...+-.+.. -.+.+.+.+.+ |++++.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~----~~~~~~ 240 (442)
T TIGR00800 166 EWLAVVPPFAAFGMLIWALSKAHGKGPLGE-LTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFG----KSKKTA 240 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcccc-CCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhc----CCccch
Confidence 5555543322222222111121 1111110 100011123345666666664444333 46888899988 555444
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhhhh----ccCcch--hHHhhCCCChhHHHHHHH------HHH-HHHHHhhhccccc
Q 013039 268 PMWRGVVVAYIVVALCYFPVALIGYWM----FGNKVE--DNILLSLEKPTWLIVMAN------FFV-VVHVIGSYQIYAM 334 (451)
Q Consensus 268 ~~~~~~~~~~~~~~~~Y~~~~~~gy~~----fg~~~~--~~il~~~~~~~~~~~~~~------~~~-~i~~~~s~pl~~~ 334 (451)
. +....++....+....+|+.+... +|+... .+....+.... .....+ ++. +..+.++.-...+
T Consensus 241 ~--~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~-~~~~~~~~~f~~~~~vl~~~~t~~~~N~y 317 (442)
T TIGR00800 241 I--WGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLT-YAVGARAVFGFGFCFVVAQLSTNISANSY 317 (442)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccc-hhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3 556777777777777777776654 665432 23344443221 111111 222 2222346666778
Q ss_pred cHHHHHHHHhhhc
Q 013039 335 PVFDMIETLLVKK 347 (451)
Q Consensus 335 ~~~~~~~~~~~~~ 347 (451)
+....+.+.+.++
T Consensus 318 s~~l~l~~l~~~~ 330 (442)
T TIGR00800 318 SAGLDIAALLPKY 330 (442)
T ss_pred chHHHHHHhCcCc
Confidence 8777777777543
No 56
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.87 E-value=3.9e-06 Score=77.54 Aligned_cols=142 Identities=18% Similarity=0.168 Sum_probs=101.8
Q ss_pred HHHHHHHhhhhccccccHH---HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhcccccc
Q 013039 44 YSAFHNVTAMVGAGVLSLP---YAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGL 120 (451)
Q Consensus 44 ~~~~~l~~~~iG~GiL~lP---~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~~~g~ 120 (451)
+-.+..+++++|+|.=+== .-|..-|+. |+.-.++++++-..++..+.+...+.+. ++|.|..+..+||+++
T Consensus 7 ~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~a---~~y~~~~~~v~~~~~~- 81 (349)
T COG3949 7 RWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFNA---TSYREILKYVSGPKFA- 81 (349)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcc---cchHHHHHHHhhHHHH-
Confidence 4456677799999976632 234455766 7777788888888888888888775543 3999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 013039 121 YIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLS 199 (451)
Q Consensus 121 ~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~v~ 199 (451)
.+.++.+.+.++++++.-+.-.+..+++.++- ..+.-.++..+.+..+.+.++.+.+-.+..+-+-+.+.
T Consensus 82 ki~d~~iif~lf~~~vVM~AGags~~~e~~~l---------P~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi 151 (349)
T COG3949 82 KIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL---------PYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLII 151 (349)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHhCc---------cHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHH
Confidence 88899999999999998888888888877542 22222244444445555566677777666655554433
No 57
>PRK11375 allantoin permease; Provisional
Probab=98.70 E-value=0.00022 Score=72.31 Aligned_cols=298 Identities=11% Similarity=0.018 Sum_probs=150.8
Q ss_pred cCCChHHHHHHHHHhhhhccccccHHHHH--HhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHh
Q 013039 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAM--AQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (451)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP~a~--~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~ 114 (451)
+|+.++++-+..-++..+..+.+.+-.+. ...++..+++..++..++...-+.+......++ ..++.-+.|..|
T Consensus 24 ~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~----Gl~~~v~sR~sF 99 (484)
T PRK11375 24 QRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKY----GVPFAMILRASY 99 (484)
T ss_pred ccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHhccccccc----CCChhHhHHHHH
Confidence 44467666666666555543333222111 123344445554444444444444444433322 238999999999
Q ss_pred cccccchhhHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHhhcCC--------CCCcch--hhHHHHHHHHHHHHhcCCCc
Q 013039 115 GEKLGLYIVVPQQL-IVEVGVCIVYMVTGGKSLHKVHELLCKEP--------CKEIKL--SYFIMIFASVHFVLSHLPNF 183 (451)
Q Consensus 115 G~~~g~~~~~~~~~-~~~~g~~~~y~~~~~~~l~~~~~~~~~~~--------~~~~~~--~~~~~i~~~i~~pl~~~~~l 183 (451)
|.+ |..+..+... +...+.........++.+..++....+.. ....+. ....+++.++..++.+ ...
T Consensus 100 G~~-Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~-~g~ 177 (484)
T PRK11375 100 GVR-GALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGF-GGG 177 (484)
T ss_pred ccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHHH-cCH
Confidence 975 6577777764 45666666677777788777765543210 011111 1222344455566554 456
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhheeee-ccCCCccccccc-cCcccchhhHHHHhhhHhhhcc-cceeecccccccccC
Q 013039 184 NAIAGVSLAAAVMSLSYSTIAWSASVRK-GVQPDVAYGYKA-KTAAGTVFNFFSALGDVAFAYA-GHNVVLEIQATIPST 260 (451)
Q Consensus 184 ~~l~~~s~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~-~h~~~~~i~~~m~~~ 260 (451)
+.++++..++..+.....+...+..+.. +..+-.+..... .........+..++...+=++. .-.+.|.+.+..
T Consensus 178 ~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~--- 254 (484)
T PRK11375 178 KVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNA--- 254 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhccc---
Confidence 6666666665554433222222222222 211111110000 0011123445555544444555 345788888887
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHhhh----hhhccCcc--hhHHhhCCCChhHHHHHHHHHHHHHHHhhh-cccc
Q 013039 261 PEKPSKGPMWRGVVVAYIVVALCYFPVALIG----YWMFGNKV--EDNILLSLEKPTWLIVMANFFVVVHVIGSY-QIYA 333 (451)
Q Consensus 261 ~~~p~~~~~~~~~~~~~~~~~~~Y~~~~~~g----y~~fg~~~--~~~il~~~~~~~~~~~~~~~~~~i~~~~s~-pl~~ 333 (451)
|++++.. +....+..+...+...+|+.. ...+|+.. +.+++..+.+ ......+.+...++..++- ....
T Consensus 255 -k~~~~~~--~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~-~~~~~~a~l~~v~a~~~tN~~~N~ 330 (484)
T PRK11375 255 -HSFRAQA--LGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDS-LFASFFAVLVILMTTISTNATGNI 330 (484)
T ss_pred -CChhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6654433 555556666665554444432 33554432 3344554432 3344445555666666554 4688
Q ss_pred ccHHHHHHHHhhhc
Q 013039 334 MPVFDMIETLLVKK 347 (451)
Q Consensus 334 ~~~~~~~~~~~~~~ 347 (451)
++.-..+.+.+.++
T Consensus 331 ys~~~~l~~l~pk~ 344 (484)
T PRK11375 331 IPAGYQIAALAPTK 344 (484)
T ss_pred ccHHHHHHHhCcCc
Confidence 88888888888654
No 58
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.61 E-value=4.9e-05 Score=74.54 Aligned_cols=262 Identities=15% Similarity=0.139 Sum_probs=150.5
Q ss_pred CHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCch
Q 013039 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFN 184 (451)
Q Consensus 105 sy~~~~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~ 184 (451)
+-....|..||. +|.++..+.+.+.+.|....-....++..... .+.+...++++..+++...+.. ..+
T Consensus 82 pqmi~sR~~fG~-~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~---------~~~~~~~~ili~g~l~~l~~if-G~r 150 (442)
T COG1457 82 PQMILSRYPFGV-KGSILPSLLNGITLIGWFGVNVILSGIAIGSG---------TGLPVWAGILIIGVLMTLVTIF-GYR 150 (442)
T ss_pred Chheeecccccc-hhHHHHHHHHHHHHhhHHHHHHHHhccccccC---------CCCcHHHHHHHHHHHHHHHHHH-hHH
Confidence 445778899997 56699999999999999888888887762111 2344556666666666655554 445
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhheee-eccCCCccccccccCcccchhhHHHHhhhHhhhcccc-eeecccccccccCCC
Q 013039 185 AIAGVSLAAAVMSLSYSTIAWSASVR-KGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGH-NVVLEIQATIPSTPE 262 (451)
Q Consensus 185 ~l~~~s~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h-~~~~~i~~~m~~~~~ 262 (451)
.+..++..++...++.....+...+. ++..+. .+ ...+.++.++..+++...-.+... +-...+.+.+ |
T Consensus 151 ~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~---~~--~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~----~ 221 (442)
T COG1457 151 ALHKLERIAVPLLLLLFLYLLALLFRSKGGLDA---LW--VKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYA----P 221 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccce---ee--ccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhc----C
Confidence 55444444444333222222222222 111111 11 122556677777777666555554 5556677777 3
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhccCcc-hhHHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHH
Q 013039 263 KPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV-EDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIE 341 (451)
Q Consensus 263 ~p~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~-~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~ 341 (451)
+|+-++.-.....+......+-++.|.....+-|+.. ..+....+.. +...+-+...++..++--...++..-.+.
T Consensus 222 ~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~ 298 (442)
T COG1457 222 SPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFA 298 (442)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3331223355557777777777788888878777666 4455555542 45566666677777777777777776666
Q ss_pred HHhhhccCCCchhHHHHHHHHHHHHHHHHHHH----hccchhhhhhhhhhhhhhhhHHH
Q 013039 342 TLLVKKLNFSPTRLLRFVVRNLYVASTMFIGI----TFPFFGGLLGFFGGFAFAPTTYF 396 (451)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~----~v~~~~~i~~~~G~~~~~~~~~i 396 (451)
+...+- ++..+.+...+. ..++++. +..+++..+.++|..........
T Consensus 299 ~i~~~l-----~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~ 350 (442)
T COG1457 299 NIIPKL-----SKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVM 350 (442)
T ss_pred Hhhhhh-----hhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666531 122222222221 2222222 35567777777776664444433
No 59
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.52 E-value=0.00047 Score=67.98 Aligned_cols=251 Identities=15% Similarity=0.123 Sum_probs=141.1
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHH
Q 013039 68 LGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLH 147 (451)
Q Consensus 68 ~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~ 147 (451)
.++..+++..++..++...-+.+......+. + .++.-+.|..||. .|..+..+...+...|.-.......++.+.
T Consensus 26 L~~~~ai~aiilG~~i~~~~~~l~~~~G~~~-G---l~~~v~sR~~FG~-~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~ 100 (386)
T TIGR02358 26 LGLTRGLLAILLGHLVGVLLLSAAGVIGADT-G---LSAMGSLKLSLGS-KGSVLPSLLNLLQLVGWTAVMIIVGAKAAS 100 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhccc-C---cCHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445455555554444444344444433322 2 3799999999997 577888999899999888888888899999
Q ss_pred HHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHhhheeeeccCCCccccccccCcc
Q 013039 148 KVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAA 227 (451)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (451)
.+.+...+.+ +...+..+..++..+.+. ...+.++++..++..+.....+...+....+...++ ... . +
T Consensus 101 ~~~~~~~~~~----~~~~~~~i~~~l~~~~~~-~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~-~--~ 169 (386)
T TIGR02358 101 LLGGRLFGEE----SPMLWILIVGILVTLWLL-SGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSE---LWN-R--A 169 (386)
T ss_pred HHHHHhcCCC----chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh---hcC-C--C
Confidence 9887643221 123344444444455444 366777777777766544433333332222221111 111 1 1
Q ss_pred cchhhHHHHhhhHhhh-cccceeecccccccccCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhccCcchhHHhhC
Q 013039 228 GTVFNFFSALGDVAFA-YAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLS 306 (451)
Q Consensus 228 ~~~~~~~~~~~~~~fa-f~~h~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~~~~il~~ 306 (451)
.+ ..+..++....-. -......+.+.+.. |+|++ ..+....+..+...+-.++|.......++.....+...
T Consensus 170 ~~-~s~~~~~~~~~~~~~swa~~~~DysRy~----k~~~~--~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~ 242 (386)
T TIGR02358 170 GD-MSFAVAVELVIAMPLSWLPLIADYTRFA----RNPRH--VFLGTVLGYFIGSCWMYFLGLAVTLATGQTDIISILAG 242 (386)
T ss_pred CC-ccHHHHHHHHHHHHHHHHHHccchhhhc----CCCcc--eehHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHh
Confidence 11 2233333332211 12223467777776 55543 44677778888888888888877666665433333333
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHhh
Q 013039 307 LEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLV 345 (451)
Q Consensus 307 ~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~ 345 (451)
.. ....+-+...++..++-....++.-..+.+.++
T Consensus 243 ~g----~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~~ 277 (386)
T TIGR02358 243 AG----LGIPALLIILLSTVTTTFMDIYSAAISTGNLLP 277 (386)
T ss_pred cc----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 21 112334445555556666677777777777764
No 60
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.50 E-value=0.00071 Score=68.83 Aligned_cols=153 Identities=11% Similarity=0.154 Sum_probs=98.2
Q ss_pred cccCCChHHHHHHHHHhhhhccc-cccHHHHHHhhChhHHHHHHHHHH-HHHHHH----HHHHHHhhhhcCCCccCCHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSW-IITLYT----LWQMVEMHEMVPGKRFDRYHE 108 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~~i~~~-~~~~~s----~~~l~~~~~~~~~~~~~sy~~ 108 (451)
-..|+.+++.....+..+.+|++ .++.|....+.|+. ........ ...+.. +..+.+..++. + ..|.+|
T Consensus 37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~T~~e 111 (471)
T TIGR02119 37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLG--WVLLAMIQVPTGYFVLGVLGKKFAIISRKY-N--AITIND 111 (471)
T ss_pred EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C--CccHHH
Confidence 45688999999999999999886 67788777777753 11111111 111111 12222223333 2 459999
Q ss_pred HHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHH
Q 013039 109 LGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAG 188 (451)
Q Consensus 109 ~~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 188 (451)
+-++-||++..+.+..+...+..++...+.+...+..++.+++ ++....+++..+++......-.++...+
T Consensus 112 ~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g---------i~~~~~iii~~~iv~iYt~~GG~~av~~ 182 (471)
T TIGR02119 112 VLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG---------LSYLTALFIFSSSVLIYTTFGGFRAVAL 182 (471)
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999766667777777777777666667777777766653 3444445555555666667778888888
Q ss_pred HHHHHHHHHHHHH
Q 013039 189 VSLAAAVMSLSYS 201 (451)
Q Consensus 189 ~s~~~~~~~v~~~ 201 (451)
...+-....+...
T Consensus 183 td~iQ~~v~~~~~ 195 (471)
T TIGR02119 183 TDAIQGIVMFTGT 195 (471)
T ss_pred HHHHHHHHHHHHH
Confidence 8877766544433
No 61
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.38 E-value=0.0039 Score=63.59 Aligned_cols=154 Identities=12% Similarity=0.116 Sum_probs=92.7
Q ss_pred cccCCChHHHHHHHHHhhhhcc-ccccHHHHHHhhChhHHHHHHH--HHH-HHHHHHHHHHHHhhhhcCCCccCCHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGA-GVLSLPYAMAQLGWGPGVAILI--LSW-IITLYTLWQMVEMHEMVPGKRFDRYHELG 110 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~-GiL~lP~a~~~~G~~~gii~~i--~~~-~~~~~s~~~l~~~~~~~~~~~~~sy~~~~ 110 (451)
-..|+.+++...+.+..+.+|+ ..+..|....+.|+........ ... +...+-+..+.+..++. + ..|..|+.
T Consensus 38 ~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~--~~T~~e~l 114 (483)
T PRK09442 38 LGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY-N--AVTLNDML 114 (483)
T ss_pred eeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C--CccHHHHH
Confidence 4468889999999998888877 4777887666667531111110 111 11112222233333433 2 45999999
Q ss_pred HHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHH
Q 013039 111 QHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVS 190 (451)
Q Consensus 111 ~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 190 (451)
++-||++..+.+..+......++.....+...+..++.+++ ++....+++..+++...+..-.++...+..
T Consensus 115 ~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g---------i~~~~~iii~~~iv~iYt~~GGl~av~~TD 185 (483)
T PRK09442 115 RARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG---------ISYETGLLIFGITVALYTAFGGFRAVVLTD 185 (483)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999766556666655555555555566666666666542 333444455555556667777888888877
Q ss_pred HHHHHHHHHH
Q 013039 191 LAAAVMSLSY 200 (451)
Q Consensus 191 ~~~~~~~v~~ 200 (451)
.+-.+..+..
T Consensus 186 ~iQ~~i~~~~ 195 (483)
T PRK09442 186 ALQGIVMLVG 195 (483)
T ss_pred HHHHHHHHHH
Confidence 7776654443
No 62
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.36 E-value=0.00057 Score=68.14 Aligned_cols=150 Identities=14% Similarity=0.179 Sum_probs=97.5
Q ss_pred cCCChHHHHHHHHHhhhhccc-cccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhc
Q 013039 37 SRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (451)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G 115 (451)
.|+.+++...+.+..+.+|++ .++.|....+.|+. +....+...........++.+..++.+ ..|..|..++-||
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~T~~e~l~~Ryg 77 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFINNG---AYTMPEYLEKRFG 77 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcC---CCchhHHHHHHhC
Confidence 477888999999998888875 77889877777854 222212222222334444444444322 4599999999999
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 013039 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAV 195 (451)
Q Consensus 116 ~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 195 (451)
++..+.+..+...+..+......+...+..++.+++ ++....+++..+++...+..-.++...+...+-.+
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g---------i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~ 148 (407)
T TIGR00813 78 KRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG---------LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAV 148 (407)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 866767777777777777777777777777777653 33344444555555555666778887777777766
Q ss_pred HHHH
Q 013039 196 MSLS 199 (451)
Q Consensus 196 ~~v~ 199 (451)
+.+.
T Consensus 149 i~~~ 152 (407)
T TIGR00813 149 IMIL 152 (407)
T ss_pred HHHH
Confidence 5443
No 63
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.35 E-value=3.3e-05 Score=77.52 Aligned_cols=224 Identities=15% Similarity=0.151 Sum_probs=119.2
Q ss_pred cccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhh--hcCCCccCCHHHHHHHHhcccccchhhHHHHHHHHHHHH
Q 013039 58 VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHE--MVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVC 135 (451)
Q Consensus 58 iL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~--~~~~~~~~sy~~~~~~~~G~~~g~~~~~~~~~~~~~g~~ 135 (451)
.|=+|+...++|+...++.+.+.-.+..+|..-+...+. ..++.+ -|..+ .+.+||..| --+....++.+...|
T Consensus 87 FLR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGG--aYymI-SRsLGpEfG-GSIGllFf~anV~~~ 162 (945)
T KOG1288|consen 87 FLRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGG--AYYMI-SRSLGPEFG-GSIGLLFFVANVFNC 162 (945)
T ss_pred HHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCc--eEEEE-EcccCcccC-CeeeehhhHHHHhcc
Confidence 344688888999888888877766666666555544332 233333 45444 344566666 444555555556666
Q ss_pred HHHHHHhhhhHHHHHHHhhcCCCC--Cc-chhhHHH----HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHhhhe
Q 013039 136 IVYMVTGGKSLHKVHELLCKEPCK--EI-KLSYFIM----IFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSAS 208 (451)
Q Consensus 136 ~~y~~~~~~~l~~~~~~~~~~~~~--~~-~~~~~~~----i~~~i~~pl~~~~~l~~l~~~s~~~~~~~v~~~~~~~~~~ 208 (451)
..++.-+.+-+-+.+.....+... .+ +-.+|-. +...+++.+|+. .-.-.++.+.+..+........+.+..
T Consensus 163 am~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~l-GsalfAkas~i~f~~is~s~~si~iS~ 241 (945)
T KOG1288|consen 163 AMNISGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLL-GSALFAKASNILFVVISVSLFSIPISF 241 (945)
T ss_pred hhhhhhhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHh-hHHHHHhhhhhhhhHHHHHHhhhhhee
Confidence 556655544444443321111000 01 1122322 222333344444 233344555444443222233333444
Q ss_pred eeeccCCCc-----ccc-------------------------ccccCcccchhhHHHHhhhHhhhcccceeecccccccc
Q 013039 209 VRKGVQPDV-----AYG-------------------------YKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIP 258 (451)
Q Consensus 209 ~~~~~~~~~-----~~~-------------------------~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~ 258 (451)
+..+..++. ++. +.......+..++-..++++.-+-.|...=.....|+
T Consensus 242 ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSgEL- 320 (945)
T KOG1288|consen 242 IFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMSGEL- 320 (945)
T ss_pred EEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcCccc-
Confidence 433322111 000 0000111233456777777766666666556667777
Q ss_pred cCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 013039 259 STPEKPSKGPMWRGVVVAYIVVALCYFPVALIG 291 (451)
Q Consensus 259 ~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~~~g 291 (451)
|+|+|. +++....+...++++|++..++-
T Consensus 321 ---k~PSkS-IP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 321 ---KAPSKS-IPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred ---cCcccc-CCccchHHHHHHHHHHHHHHHHh
Confidence 999998 99999999999999999987764
No 64
>PRK12488 acetate permease; Provisional
Probab=98.30 E-value=0.0055 Score=63.45 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=94.9
Q ss_pred cccCCChHHHHHHHHHhhhhccc-cccHHHHHHhhChhHHHHHHHHHHHHHHH-HHHHHHHhhhhcCCCccCCHHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLY-TLWQMVEMHEMVPGKRFDRYHELGQH 112 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~~i~~~~~~~~-s~~~l~~~~~~~~~~~~~sy~~~~~~ 112 (451)
-..|+.+++...+.+..+.+|++ .++.|......|+. +. +..+...+.+. ...++.+-.++. +..|.+|..++
T Consensus 64 laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~-~~~~g~~~g~~~~~~~~a~~lr~~---g~~T~~d~l~~ 138 (549)
T PRK12488 64 TAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GL-LYALGVLAGWPIILFLIAERLRNL---GKYTFADVVSY 138 (549)
T ss_pred eeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HH-HHHHHHHHHHHHHHHHHHHHHHHC---CCcchHHHHHH
Confidence 34578999999999999988886 67899877777864 22 22222222221 123333333322 24699999998
Q ss_pred HhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 013039 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192 (451)
Q Consensus 113 ~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 192 (451)
-||.+.-|.+..+...+.........+...+..++.+++ ++....+++..+++...+..-.++...+...+
T Consensus 139 Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g---------i~~~~~iii~~~i~~~Yt~~GGm~av~~td~i 209 (549)
T PRK12488 139 RLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG---------ISYLYAVVIVGALMVLYVTFGGMLATTWVQII 209 (549)
T ss_pred HcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 888655557777766666666666666666666665542 34444455555555666667788888777777
Q ss_pred HHHHHHH
Q 013039 193 AAVMSLS 199 (451)
Q Consensus 193 ~~~~~v~ 199 (451)
-.+..+.
T Consensus 210 Q~~im~~ 216 (549)
T PRK12488 210 KAVLLLS 216 (549)
T ss_pred HHHHHHH
Confidence 7665443
No 65
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.23 E-value=0.0014 Score=63.84 Aligned_cols=316 Identities=14% Similarity=0.114 Sum_probs=144.6
Q ss_pred HHHHhhhhccccccHHHH-HHhhC--hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhcccccchhh
Q 013039 47 FHNVTAMVGAGVLSLPYA-MAQLG--WGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIV 123 (451)
Q Consensus 47 ~~l~~~~iG~GiL~lP~a-~~~~G--~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~~~g~~~~ 123 (451)
+.++.-.+|+|.|-.|-. -.++| |..+.+.+++.++..-..+.+ +..+.+ + +|+++.++. ||+++ .+.
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av~~~g-G--~~~~l~~~~-g~~f~-~lf 72 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----ALALVG-G--GYDSLSARI-GKVFG-ILF 72 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----eeeecC-C--CHHHHHHHh-ChHHH-HHH
Confidence 356777899999999854 44555 566666666666655444433 222222 2 788877765 67777 444
Q ss_pred HHHHHHHHH-H------HHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 013039 124 VPQQLIVEV-G------VCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVM 196 (451)
Q Consensus 124 ~~~~~~~~~-g------~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 196 (451)
.+.+.+..- + ..++|-.. +..+++ ............+++..+.+.+++ |.-|-..++..+-+.+
T Consensus 73 ~~~~~l~iGP~~aiPRtaa~s~e~~----i~p~~~----~~~~~~~l~i~siiff~i~~~l~~-~~~k~~~~iGk~LTP~ 143 (378)
T TIGR00796 73 TVILYLTIGPLFAIPRTATVSFEMG----IAPLLH----SPTSLLALFIFSLIFFAVVLLLSL-NPSKLIDRVGKFLTPA 143 (378)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHH----HHhccC----cccchHHHHHHHHHHHHHHHHHHc-CcccHHHHhHHHHHHH
Confidence 444332221 1 12222222 111111 111101111122233333333444 3334444444444443
Q ss_pred HHHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcc-------cceeeccccc-ccccCCCCCCCCC
Q 013039 197 SLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYA-------GHNVVLEIQA-TIPSTPEKPSKGP 268 (451)
Q Consensus 197 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~-------~h~~~~~i~~-~m~~~~~~p~~~~ 268 (451)
.+..+..+++..+.+...+ .... ..+... ...+.+++---.+++. +...+-.+.+ |+ |||+|.
T Consensus 144 lLi~l~~lii~g~~~p~g~-~~~~--~~~~~~-~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~----~~~~~~- 214 (378)
T TIGR00796 144 LLVTLLALIIKALLWPAGP-ILAA--SGAYAS-QQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGV----TKPKKI- 214 (378)
T ss_pred HHHHHHHHHHHHHHcCCCC-cCCc--cccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCHHHH-
Confidence 3333344444444332111 1100 000000 0123333333333333 4445555555 77 677655
Q ss_pred CchHHHH---HHHHHHHHHHHHHhhhhhhcc---Cc-chhHHhhCCCC---hhHHHHHHHHHHHHHHHhhhccccccHHH
Q 013039 269 MWRGVVV---AYIVVALCYFPVALIGYWMFG---NK-VEDNILLSLEK---PTWLIVMANFFVVVHVIGSYQIYAMPVFD 338 (451)
Q Consensus 269 ~~~~~~~---~~~~~~~~Y~~~~~~gy~~fg---~~-~~~~il~~~~~---~~~~~~~~~~~~~i~~~~s~pl~~~~~~~ 338 (451)
.++.... +......+|...+..|...-+ +. ..+.++.+..+ ++....+..+.+.++++++-.-....+.+
T Consensus 215 ~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~ 294 (378)
T TIGR00796 215 TKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSE 294 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554 445555566666666544322 11 12333333211 24455667777777777776666666555
Q ss_pred HHHHHhhhccCCCchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHH
Q 013039 339 MIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWL 403 (451)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l 403 (451)
.+++...+ .+.. .......+.+..++. -.++.+.++ ....+.++.|....+
T Consensus 295 ~f~~~~~k-----~~y~---~~v~~~~l~s~~ia~--~Gl~~Ii~~----~~PvL~~~YP~~i~l 345 (378)
T TIGR00796 295 YFHKLVPK-----LSYK---TWVIVFTLFSFIVAN--LGLTQIISI----SIPVLMIIYPLAIVL 345 (378)
T ss_pred HHHHhcCC-----CCHH---HHHHHHHHHHHHHHH--hCHHHHHHH----HHHHHHHHHHHHHHH
Confidence 55555321 1111 112222233333333 256777775 445666667766544
No 66
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.17 E-value=0.0069 Score=61.76 Aligned_cols=149 Identities=14% Similarity=0.102 Sum_probs=94.1
Q ss_pred cccCCChHHHHHHHHHhhhhc-cccccHHHHHHhhChhHHHHHHH---HHHHHHHHHHHHHHHhhhhcCCCccCCHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVG-AGVLSLPYAMAQLGWGPGVAILI---LSWIITLYTLWQMVEMHEMVPGKRFDRYHELG 110 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG-~GiL~lP~a~~~~G~~~gii~~i---~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~ 110 (451)
...|+.+.+-.......+.++ .-.+.+|....+.|+....+... ...+...+-+..+.+..+ .++ ..|.+|.-
T Consensus 35 ~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~-~~~--~~T~~d~l 111 (493)
T COG0591 35 LGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAK-ARG--ATTIPDFL 111 (493)
T ss_pred ccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccC--CccHHHHH
Confidence 446777777777777777777 67999999888888664444333 222223333444444442 222 56999999
Q ss_pred HHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHH
Q 013039 111 QHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVS 190 (451)
Q Consensus 111 ~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 190 (451)
++-||++..|.+..+...+....-+...+...+..++..++ .+...-..+...++..-...-.++...+..
T Consensus 112 ~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g---------i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td 182 (493)
T COG0591 112 EARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG---------ISYVTGILIGALIVALYTFLGGLRAVVWTD 182 (493)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---------CCHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 99999657778988888888888888888888888855544 222332333333444444444555555554
Q ss_pred HHHHH
Q 013039 191 LAAAV 195 (451)
Q Consensus 191 ~~~~~ 195 (451)
.+--.
T Consensus 183 ~iqg~ 187 (493)
T COG0591 183 FIQGL 187 (493)
T ss_pred HHHHH
Confidence 44333
No 67
>PRK11017 codB cytosine permease; Provisional
Probab=98.16 E-value=0.0055 Score=60.92 Aligned_cols=205 Identities=14% Similarity=0.105 Sum_probs=102.9
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHH
Q 013039 68 LGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLH 147 (451)
Q Consensus 68 ~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~ 147 (451)
.++..+++..++...+...-..+......+. + .++..+.|..||.+ |..+..+...+...+.........++.++
T Consensus 39 Ls~~~ai~aiilG~~i~~~~~~l~~~~G~k~-G---~~~~v~sR~~FG~~-Gs~l~~~~~~i~~igW~av~~~~~~~~l~ 113 (404)
T PRK11017 39 LSFVDFLLAVLIGNLLLGIYTAALGYIGAKT-G---LSTHLLARFSFGEK-GSWLPSLLLGFTQVGWFGVGVAMFAIPVV 113 (404)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-C---cCHHHHHHHHhchh-HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4455455555544444443333444433322 2 38999999999974 66888887777777766665555555555
Q ss_pred HHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHhhheeee-ccCCCccccccccCc
Q 013039 148 KVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRK-GVQPDVAYGYKAKTA 226 (451)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 226 (451)
...+ .+...+.+++.++..+.+.. ..+.+++++..+........+...+....+ +...... .. .
T Consensus 114 ~~~~---------~~~~~~~~i~~~l~~~~~~~-G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~-~~--~-- 178 (404)
T PRK11017 114 KATG---------LDINLLIVLSGLLMTVTAYF-GISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLK-AI--V-- 178 (404)
T ss_pred HHhC---------CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhh-cC--C--
Confidence 4332 12233444455555555443 244444444444443222222222222221 1111110 00 0
Q ss_pred ccchhhHHHHhhhHhhhccc-ceeecccccccccCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhccCc
Q 013039 227 AGTVFNFFSALGDVAFAYAG-HNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK 298 (451)
Q Consensus 227 ~~~~~~~~~~~~~~~faf~~-h~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~ 298 (451)
+.+...+..++...+-.+.. -.+.+.+.+.. |++++. ......+..+...+-.++|.......|+.
T Consensus 179 ~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~----k~~~~~--~~~~~lg~~i~~~~~~~~G~~~a~~~~~~ 245 (404)
T PRK11017 179 PAEPLDFSAALTLVVGSFISGGTLTADFVRFG----RSAKIA--VLATMVAFFLGNSLMFIFGAAGAAVYGQA 245 (404)
T ss_pred CCCcccHHHHHHHHHHHHHHhHhcCCChHhhc----cCccce--eehhHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 11223455555554444433 46777888876 544332 24555666666666666676655566553
No 68
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.16 E-value=0.014 Score=60.42 Aligned_cols=150 Identities=14% Similarity=0.173 Sum_probs=89.1
Q ss_pred cccCCChHHHHHHHHHhhhhcc-ccccHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHhhhhcCCCccCCHHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGA-GVLSLPYAMAQLGWGPGVAILILSWIITL-YTLWQMVEMHEMVPGKRFDRYHELGQH 112 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~-GiL~lP~a~~~~G~~~gii~~i~~~~~~~-~s~~~l~~~~~~~~~~~~~sy~~~~~~ 112 (451)
-..|+.+++...+.+.++.+++ ..+..|....+.|+. +... .+...+.+ ....++.+-.++. +..|.+|..++
T Consensus 64 laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~-~~g~~~~~~i~~~~~a~~lrr~---g~~T~~d~l~~ 138 (549)
T TIGR02711 64 TAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIY-SLGFLVGWPIILFLIAERLRNL---GRYTFADVASY 138 (549)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHH-HHHHHHHHHHHHHHHHHHHHHc---CCccHHHHHHH
Confidence 3467888888888888887765 588899877777864 2221 22222222 2233344433332 24699999999
Q ss_pred HhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 013039 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192 (451)
Q Consensus 113 ~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 192 (451)
=||+|.-|.+..+...+.........+...+..++.+++ ++....+++..+++..-+..-.++...+...+
T Consensus 139 Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g---------i~~~~~iii~~~i~~~Yt~~GGm~av~~td~i 209 (549)
T TIGR02711 139 RLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG---------LNYHVAVVLVGILMVMYVLFGGMLATTWVQII 209 (549)
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 888655556655555555555455555556655555532 33344444555555555666677777777777
Q ss_pred HHHHHH
Q 013039 193 AAVMSL 198 (451)
Q Consensus 193 ~~~~~v 198 (451)
-.+..+
T Consensus 210 Q~~im~ 215 (549)
T TIGR02711 210 KAVLLL 215 (549)
T ss_pred HHHHHH
Confidence 665443
No 69
>PRK09395 actP acetate permease; Provisional
Probab=98.15 E-value=0.015 Score=60.32 Aligned_cols=150 Identities=13% Similarity=0.148 Sum_probs=90.1
Q ss_pred cccCCChHHHHHHHHHhhhhccc-cccHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHhhhhcCCCccCCHHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITL-YTLWQMVEMHEMVPGKRFDRYHELGQH 112 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~~i~~~~~~~-~s~~~l~~~~~~~~~~~~~sy~~~~~~ 112 (451)
-..|+.+++...+.+..+.+|++ .++.|-...+.|+.. . ...+...+.. ....++.+-.++ .+..|++|..++
T Consensus 66 ~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~-~~~~~~~~g~~~~~~~~~~~~r~---~g~~T~~d~l~~ 140 (551)
T PRK09395 66 TAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-L-IYSIGFLVGWPIILFLIAERLRN---LGKYTFADVASY 140 (551)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-H-HHHHHHHHHHHHHHHHHHHHHhh---CCCccHHHHHHH
Confidence 45678899988899998888875 788898777778742 2 2222222221 122333333332 235699999999
Q ss_pred HhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 013039 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192 (451)
Q Consensus 113 ~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 192 (451)
-||++.-|.+..+...+.........+...+..++.++ +++....+++..+++..-+..-.++...+...+
T Consensus 141 Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~---------gi~~~~~ili~~~i~~iYt~~GGm~av~~TD~i 211 (551)
T PRK09395 141 RLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF---------GLNYHVAVVLVGVLMMVYVLFGGMLATTWVQII 211 (551)
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 99965444666655555444444455555555555543 234444455555555666666678887777776
Q ss_pred HHHHHH
Q 013039 193 AAVMSL 198 (451)
Q Consensus 193 ~~~~~v 198 (451)
-.+..+
T Consensus 212 Q~iim~ 217 (551)
T PRK09395 212 KAVLLL 217 (551)
T ss_pred HHHHHH
Confidence 655443
No 70
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.11 E-value=0.016 Score=60.16 Aligned_cols=151 Identities=9% Similarity=0.035 Sum_probs=92.9
Q ss_pred cccCCChHHHHHHHHHhhhhccc-cccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~ 113 (451)
-..|+.+++...+.+..+.++++ .++.|....+.|+..-...+ ...........++.+-.++.. ..|.+|.-++-
T Consensus 29 laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~-g~~~~~~~~~~~~~p~~rr~~---~~T~~e~l~~R 104 (552)
T TIGR03648 29 VAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLM-GWTGGYVLLALLLAPYLRKFG---KYTVPDFIGDR 104 (552)
T ss_pred eeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHCC---CccHHHHHHHH
Confidence 45689999999999999988765 77888776667764211111 111111223344555444432 45899999999
Q ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 013039 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (451)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 193 (451)
||+|..|.+..+...+.........+...+..++.+.+ ++....+++..+++..-+..-.++...+...+-
T Consensus 105 f~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g---------i~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ 175 (552)
T TIGR03648 105 YYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE---------VDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQ 175 (552)
T ss_pred hCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 98766667766666666665555556666666655542 344444455555555556666788877777666
Q ss_pred HHHHH
Q 013039 194 AVMSL 198 (451)
Q Consensus 194 ~~~~v 198 (451)
.+..+
T Consensus 176 ~iim~ 180 (552)
T TIGR03648 176 YIVLI 180 (552)
T ss_pred HHHHH
Confidence 55433
No 71
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.07 E-value=0.019 Score=58.63 Aligned_cols=154 Identities=13% Similarity=0.066 Sum_probs=83.7
Q ss_pred cccCCChHHHHHHHHHhhhhccc-cccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcC--CCccCCHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVP--GKRFDRYHELGQ 111 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~--~~~~~sy~~~~~ 111 (451)
-..|+.+++...+.+..+.+++. .+..|....+.|+..... .+...+........+.+-.++.. +.+..|.+|+-+
T Consensus 33 lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~-~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~ 111 (487)
T TIGR02121 33 LGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWI-AIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFE 111 (487)
T ss_pred eeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHH
Confidence 34688899999988888888765 667887666778753211 11111112223334444323221 223568999999
Q ss_pred HHhccccc--chhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHH
Q 013039 112 HAFGEKLG--LYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGV 189 (451)
Q Consensus 112 ~~~G~~~g--~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 189 (451)
+-||++.+ +.+..+...+.........+...+..++.+++ ++....+++..++...-+..-.++...+.
T Consensus 112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g---------i~~~~~iii~~~i~~~Yt~~GGl~av~~T 182 (487)
T TIGR02121 112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG---------LDYKTGLLIGALIIVIYTFFGGFLAVSWT 182 (487)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99996432 12223323322333333444445555555432 33344444555555555566677777777
Q ss_pred HHHHHHHHH
Q 013039 190 SLAAAVMSL 198 (451)
Q Consensus 190 s~~~~~~~v 198 (451)
..+-.+..+
T Consensus 183 D~iQ~~i~~ 191 (487)
T TIGR02121 183 DFVQGLLMF 191 (487)
T ss_pred HHHHHHHHH
Confidence 766665443
No 72
>PRK10484 putative transporter; Provisional
Probab=98.04 E-value=0.016 Score=59.80 Aligned_cols=156 Identities=12% Similarity=0.024 Sum_probs=78.7
Q ss_pred cccCCChHHHHHHHHHhhhhccc-cccHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHhhhhcCCCccCCHHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITL-YTLWQMVEMHEMVPGKRFDRYHELGQH 112 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~~i~~~~~~~-~s~~~l~~~~~~~~~~~~~sy~~~~~~ 112 (451)
-..|+.+++...+.+..+.++++ .++.|....+.|+.. ..... .+.+.. .....+.+-.+| .+..|.+|+-++
T Consensus 35 lagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~-~~~~~-~~~~~~~~~~~~~~p~~~r---~~~~T~~e~l~~ 109 (523)
T PRK10484 35 LAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSV-MAWEV-TAAIALIILALIFLPRYLK---SGITTIPDFLEE 109 (523)
T ss_pred ecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHH-HHHHH-HHHHHHHHHHHHHHHHHHh---cCCccHHHHHHH
Confidence 45688999999999998888775 777887766678542 11111 111111 223333332232 235699999999
Q ss_pred HhcccccchhhHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHH----HHHHHHHHHhcCCCchhHH
Q 013039 113 AFGEKLGLYIVVPQQLIVEVGVC-IVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIM----IFASVHFVLSHLPNFNAIA 187 (451)
Q Consensus 113 ~~G~~~g~~~~~~~~~~~~~g~~-~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----i~~~i~~pl~~~~~l~~l~ 187 (451)
-||++.. .+......+...... ...+...+..+..++.... ..+++...... +..++...-+..-.++...
T Consensus 110 Ryg~~~~-~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~---~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~ 185 (523)
T PRK10484 110 RYDKTTR-RIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSE---LLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVA 185 (523)
T ss_pred hcCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh---hcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 9998655 333333322222221 1122222233333321100 01122222111 1223334445566788887
Q ss_pred HHHHHHHHHHHH
Q 013039 188 GVSLAAAVMSLS 199 (451)
Q Consensus 188 ~~s~~~~~~~v~ 199 (451)
+...+-.+..+.
T Consensus 186 ~TD~iQ~vim~i 197 (523)
T PRK10484 186 VSDTINGIGLLI 197 (523)
T ss_pred HHHHHHHHHHHH
Confidence 777777665443
No 73
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.01 E-value=0.00065 Score=67.73 Aligned_cols=149 Identities=17% Similarity=0.194 Sum_probs=83.0
Q ss_pred cCCChHHHHHHHHHhhhhccc-cccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhc
Q 013039 37 SRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (451)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G 115 (451)
.|+.+++...+.+..+.+|++ +++.|....+.|+. +....+............+.+-.++.+ ..|..|+-++-||
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~---~~T~~e~~~~Ryg 80 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGIS-GLWYAIGYAIGFLLFALFFAPRLRRSG---AVTIPEYLEKRYG 80 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GG-GGHHHHHHHHHHHHHHHHTHHHHHHTT-----SHHHHHHHHT-
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-eeeeccccchhHHHHHHHHHHhhcccc---hhhhhhhhhhhcC
Confidence 578899999999999999885 77889887888875 322223223333334444455444332 4599999999999
Q ss_pred ccc-cchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 013039 116 EKL-GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (451)
Q Consensus 116 ~~~-g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 194 (451)
++. .+.+..+.............+...+..++.+++ ++.....++..++.......-.++...+...+-.
T Consensus 81 ~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g---------i~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~ 151 (406)
T PF00474_consen 81 SKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG---------IPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQG 151 (406)
T ss_dssp HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHTTCTT------SHHHHHH
T ss_pred Cchhhhhhcccccchhhhhhhhccccccccchhhccc---------hhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHH
Confidence 865 345555555555556666666666666665542 3444445555555555666666777666666655
Q ss_pred HHHH
Q 013039 195 VMSL 198 (451)
Q Consensus 195 ~~~v 198 (451)
++.+
T Consensus 152 ~i~~ 155 (406)
T PF00474_consen 152 VIMI 155 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 74
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.99 E-value=0.022 Score=56.49 Aligned_cols=346 Identities=12% Similarity=0.076 Sum_probs=160.1
Q ss_pred cccCCChHHHHHHHHHhhhhccccccHHHHHHhhCh--hHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCc-cCCHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGW--GPGVAILILSWIITLYTLWQMVEMHEMVPGKR-FDRYHELGQ 111 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~--~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~-~~sy~~~~~ 111 (451)
+++|+=+++.-+..-.+...-.+-..+-...-+.|+ .-.++.+++.-++....+.+-. +++.+ ..+|+...|
T Consensus 36 ~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng-----~~G~~~gIpFpv~~R 110 (497)
T COG1953 36 AEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNG-----HAGSKYGIPFPVLSR 110 (497)
T ss_pred cccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcc-----CcccccCCCchHHHH
Confidence 345566766666655554443333333222222332 2222222222222222222222 22322 458999999
Q ss_pred HHhcccccc--hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcC----C----CCCcchhhHH--HHHHHHHHHHhc
Q 013039 112 HAFGEKLGL--YIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKE----P----CKEIKLSYFI--MIFASVHFVLSH 179 (451)
Q Consensus 112 ~~~G~~~g~--~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~----~----~~~~~~~~~~--~i~~~i~~pl~~ 179 (451)
..||-+..+ .+......+.-||.. .-..+..+..++....+. + ....+...++ +++-++.++ +.
T Consensus 111 aSFGi~Ga~~p~l~R~i~A~~WyGvq---ty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l-~~ 186 (497)
T COG1953 111 ASFGIYGANFPALIRAIVAIVWYGVQ---TYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLL-VL 186 (497)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHH-HH
Confidence 999853221 344555555566653 333444555555544332 0 1111222222 222233333 34
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhhheeeeccC-CCccccccccCc-ccchhhHHHHhhhHhhhccc-ceeecccccc
Q 013039 180 LPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQ-PDVAYGYKAKTA-AGTVFNFFSALGDVAFAYAG-HNVVLEIQAT 256 (451)
Q Consensus 180 ~~~l~~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~-h~~~~~i~~~ 256 (451)
.+..+.++++-..+-.+..+.+..+++....+... ............ +..+..+..++...+-.|.- .-|+|...+.
T Consensus 187 ~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRf 266 (497)
T COG1953 187 FKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRF 266 (497)
T ss_pred hcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcc
Confidence 45677777666665554444444444333332111 001001011111 22223344444333333332 5788888887
Q ss_pred cccCCCCCCCCCCchHHHHHHHHHHHHHHHHH----hhhhhhccCc--chhHHhhCCCChhHHHHHHHHHHHH-HHHhhh
Q 013039 257 IPSTPEKPSKGPMWRGVVVAYIVVALCYFPVA----LIGYWMFGNK--VEDNILLSLEKPTWLIVMANFFVVV-HVIGSY 329 (451)
Q Consensus 257 m~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~----~~gy~~fg~~--~~~~il~~~~~~~~~~~~~~~~~~i-~~~~s~ 329 (451)
- |+|+... ..-..+..+.+.+.-++| ..++..||+. .+.+++.++.++.....++.+.+++ ++-++.
T Consensus 267 a----~s~~~~~--~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~~Ni 340 (497)
T COG1953 267 A----KSQKAQI--WGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATISTNI 340 (497)
T ss_pred c----CChhhhh--hccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHhhhH
Confidence 7 5544433 223345555555555554 4478889987 4568888887654444244444444 344555
Q ss_pred ccccccHHHHHHHHhhhccCCCchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHH
Q 013039 330 QIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFL 397 (451)
Q Consensus 330 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~ 397 (451)
.-...+...-+.+.+.++.+.+ |-..+.....++.++.-+=..-..+...++..|++.+++...++
T Consensus 341 ~aN~vsp~~D~s~l~Pk~in~k--rg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmi 406 (497)
T COG1953 341 AANIVSPGYDLSALFPKYINIK--RGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMI 406 (497)
T ss_pred HhccCChHHHHHHhcccccchh--hhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777776654422 11112222222233333322223355555555566665555443
No 75
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.92 E-value=0.026 Score=55.56 Aligned_cols=364 Identities=16% Similarity=0.105 Sum_probs=165.3
Q ss_pred CCChHHHHHHHHHhhhhccccccHHHH-HHhhChhHHHHHHHHHHHHHHHHHH-HHHHhhhhcCCCccCCHHHHHHHHhc
Q 013039 38 RNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLW-QMVEMHEMVPGKRFDRYHELGQHAFG 115 (451)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~~gii~~i~~~~~~~~s~~-~l~~~~~~~~~~~~~sy~~~~~~~~G 115 (451)
++.......+....+-+|.|-++--.. =++-|+-+ ++.++...+..+-.. +-.|... .++. +..|..++.++
T Consensus 15 ~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~l--l~vills~l~~~~~Q~~~arLgi-vTG~---~laq~ir~~y~ 88 (416)
T COG1914 15 KLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSL--LWVILLSNLMAYILQELSARLGI-VTGK---GLAEAIRERYL 88 (416)
T ss_pred HHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-HhCC---cHHHHHHHHcc
Confidence 334445556666666677765554332 23345432 222222222222222 2222222 2332 78899999999
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 013039 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAV 195 (451)
Q Consensus 116 ~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 195 (451)
++++ ++..+...+....++++...-.+-.++.++. ++...-.++.++..+.....|+.+.+..+...-.+
T Consensus 89 ~~~~-~~~~~~~~i~~~at~iae~~G~aial~ll~~---------ip~~~g~iItav~~~iil~~~~~r~~E~~v~~l~~ 158 (416)
T COG1914 89 PGLG-ILLWILAEIAGIATDIAEVAGIAIALNLLFG---------IPLIIGAVITAVDVLIILLLKGYRLLERVVLILGL 158 (416)
T ss_pred chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9888 8888888888888888877777766665542 12223333444444444344456676655544443
Q ss_pred HHHHHHHHHhhheeeeccCCCccccccc--cCcccchhhHHHHhhh-------HhhhcccceeecccccccccCCCCCCC
Q 013039 196 MSLSYSTIAWSASVRKGVQPDVAYGYKA--KTAAGTVFNFFSALGD-------VAFAYAGHNVVLEIQATIPSTPEKPSK 266 (451)
Q Consensus 196 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------~~faf~~h~~~~~i~~~m~~~~~~p~~ 266 (451)
..+...+ +..+... ++ ......+ .|...+.......+++ ..+-...|.+.. +..+ ++.++
T Consensus 159 ~~~i~~~---~~~~~~~-p~-~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~---~~~~---~~~~~ 227 (416)
T COG1914 159 VLVILFV---YVAFVAP-PP-WGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQD---AGIK---GEENL 227 (416)
T ss_pred HHHHHHH---HHHhhcC-CC-HHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceecc---cccc---chhHH
Confidence 2222111 1111111 11 1100111 1111111112222222 222222232222 1100 11111
Q ss_pred CCCchH---HHHHHHHHHHHHHHHHhhhhhhc-cCcc-h--hHHhhC---CC--ChhHHHHHHHHHHHHHHHhhhccccc
Q 013039 267 GPMWRG---VVVAYIVVALCYFPVALIGYWMF-GNKV-E--DNILLS---LE--KPTWLIVMANFFVVVHVIGSYQIYAM 334 (451)
Q Consensus 267 ~~~~~~---~~~~~~~~~~~Y~~~~~~gy~~f-g~~~-~--~~il~~---~~--~~~~~~~~~~~~~~i~~~~s~pl~~~ 334 (451)
+.++.. ..+++....++...+-......| +++. + ++.... .. -++....+-.+..+.+=.++.....+
T Consensus 228 ~~~~~~~~d~~i~~~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~~~~~ 307 (416)
T COG1914 228 RALRYSRIDTIIGMIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTVVATY 307 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHhh
Confidence 112222 23444444444444433333333 2221 1 111111 10 01222222233333333333333333
Q ss_pred cHHHHHHHHhhhccCCCchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcC---CC-
Q 013039 335 PVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP---RK- 410 (451)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~---~~- 410 (451)
.....++...+.+ .+.+.+|...+.+..+++.++.....+...++.+.+.+.+..+-+..++++++-.+|+ +.
T Consensus 308 a~~~~~~g~~~~~---~~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~ 384 (416)
T COG1914 308 AGQIVMEGFLNWR---IPLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYK 384 (416)
T ss_pred hhHHHHHhhhccc---CchHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhccc
Confidence 3333344333221 2345666777766666666665555588999999998888888888888877776664 22
Q ss_pred -cchhHHHHHHHHHHHHHHHHH
Q 013039 411 -YSLSWCINWICIVLGLCLMIL 431 (451)
Q Consensus 411 -~~~~~~~~~~~~~~g~~~~v~ 431 (451)
.+|.+...|..+++-..+.+.
T Consensus 385 ~~~~~~~~~~~v~~~i~~L~i~ 406 (416)
T COG1914 385 NPRWLTVLGWIVVILIVALNII 406 (416)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 233344455444444443333
No 76
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.87 E-value=0.00075 Score=64.09 Aligned_cols=146 Identities=16% Similarity=0.185 Sum_probs=98.8
Q ss_pred CChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCCccCCHHHHHHHHhccc
Q 013039 39 NAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHE-MVPGKRFDRYHELGQHAFGEK 117 (451)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~-~~~~~~~~sy~~~~~~~~G~~ 117 (451)
..+.+...-+=+.++-|+|...=|..-.+-||.++.++.++.+++.---.....-... |++++ |.+|++++..|++
T Consensus 51 P~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~---Si~~i~~~~lG~~ 127 (376)
T PF02554_consen 51 PTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGK---SIGEIAGKYLGKR 127 (376)
T ss_pred CCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCc---cHHHHHHHHHHHH
Confidence 4455677888889999999999998889999999999988877776665555555433 44443 9999999999985
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 013039 118 LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMS 197 (451)
Q Consensus 118 ~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 197 (451)
++.++.+..++.+.....++....++.+....... ...+..+...+.+-+...|.--.+...+.+++...
T Consensus 128 -~~~lf~~f~~~~lilV~avF~~v~a~~~~~~p~~~---------~~~~~~I~~Ai~~G~~~y~~~~~~~~~t~i~vvll 197 (376)
T PF02554_consen 128 -AKKLFLIFIFFLLILVIAVFADVVANTFVNSPWAA---------TSSLLFIPIAILFGLLVYKRGGNLGPATIIGVVLL 197 (376)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHH---------HHHHHHHHHHHHHhHhheecCCchHhhHHHHHHHH
Confidence 55888888888888877777777766664432211 12233333333333333333334566666666643
No 77
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.82 E-value=0.00011 Score=74.11 Aligned_cols=243 Identities=14% Similarity=0.117 Sum_probs=122.2
Q ss_pred ccCCChHHHHHHHHHhhhhccccccHHHHHHhh--ChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHH
Q 013039 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQL--GWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (451)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~--G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~ 113 (451)
++|+.++++-....++..+....+.+....... ++..+++..++..++...-..+......| .+. ++..+.|..
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r-~Gl---~~~v~sR~~ 80 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPR-TGL---PTMVLSRAS 80 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHC-C------HHHHTTTT
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccc-cCC---Cchhcchhc
Confidence 356667888888888888777776666554333 44555555555555544444444444443 233 788999999
Q ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcC--------CCCCcchhhHHHHHHHHHHHHhcCCCchh
Q 013039 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKE--------PCKEIKLSYFIMIFASVHFVLSHLPNFNA 185 (451)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 185 (451)
||. .|..+..+...+...|.........++.+..+.+...+. ...........+++.++..+.. ....+.
T Consensus 81 FG~-~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~g~~~ 158 (440)
T PF02133_consen 81 FGY-RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFA-IYGMKA 158 (440)
T ss_dssp S-T-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHH-CTHHHH
T ss_pred cCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHH-hcCHHH
Confidence 996 587999999899999988888888999999888765320 0000111111222223333322 345667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhccc-ceeecccccccccCCCCC
Q 013039 186 IAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAG-HNVVLEIQATIPSTPEKP 264 (451)
Q Consensus 186 l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~-h~~~~~i~~~m~~~~~~p 264 (451)
++++............+........+... +. .......+.....+..++....-.+.. -.+.+.+.+.+ |++
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~----~~~ 231 (440)
T PF02133_consen 159 LRRLAVIAAPILLVVFIGMLIWALSKAGG-GP--LLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYA----KSD 231 (440)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHCT--HH--HCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC------H
T ss_pred HHhHHhhhhHHHHhhhhheeEEEeecCCc-ch--hhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhC----CCC
Confidence 76666655553332222222222211111 00 111000111111344454444333333 35566788888 444
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhhhh
Q 013039 265 SKGPMWRGVVVAYIVVALCYFPVALIGYW 293 (451)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~ 293 (451)
++. .+....+..........++..+..
T Consensus 232 ~~~--~~~~~~~~~~~~~~~~~~g~lg~~ 258 (440)
T PF02133_consen 232 TSA--WWGFWLGFPGGFIPFVLVGILGAA 258 (440)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCc--EEEEeehhhhHHHHHHHHHHHHHH
Confidence 333 366666666666666666665543
No 78
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.81 E-value=0.055 Score=55.48 Aligned_cols=152 Identities=12% Similarity=0.089 Sum_probs=85.0
Q ss_pred cccCCChHHHHHHHHHhhhhccc-cccHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHH-h---hhhcCCCccCCHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIIT-LYTLWQMVE-M---HEMVPGKRFDRYHE 108 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~~i~~~~~~-~~s~~~l~~-~---~~~~~~~~~~sy~~ 108 (451)
-..|+.+++...+.+..+.+|+. .++.|....+.|+.. .+..+...+. .....++.+ . .+++.+ ..|.+|
T Consensus 37 lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~--~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~T~~e 112 (502)
T PRK15419 37 LGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE--SWIAIGLTLGAWINWKLVAGRLRVHTEYNNN--ALTLPD 112 (502)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ceeHHH
Confidence 45688999999999998888876 667898777778653 2222221122 112222221 1 111222 458999
Q ss_pred HHHHHhccccc--chhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhH
Q 013039 109 LGQHAFGEKLG--LYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAI 186 (451)
Q Consensus 109 ~~~~~~G~~~g--~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 186 (451)
.-++-||++.. +.+..+...+.....+...+...+..++.+++ ++....+++..+++..-+..-.++..
T Consensus 113 ~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g---------i~~~~~iii~~~iv~iYt~~GGl~aV 183 (502)
T PRK15419 113 YFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG---------MSYETALWAGAAATILYTFIGGFLAV 183 (502)
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999996322 12233333333333333344444555554432 34444455555566666667778888
Q ss_pred HHHHHHHHHHHHH
Q 013039 187 AGVSLAAAVMSLS 199 (451)
Q Consensus 187 ~~~s~~~~~~~v~ 199 (451)
.+...+-.+..+.
T Consensus 184 ~~TD~iQ~~imi~ 196 (502)
T PRK15419 184 SWTDTVQASLMIF 196 (502)
T ss_pred HHHHHHHHHHHHH
Confidence 8877777665443
No 79
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.67 E-value=0.078 Score=53.13 Aligned_cols=78 Identities=9% Similarity=0.075 Sum_probs=41.9
Q ss_pred CCHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHH--HHHhcCC
Q 013039 104 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVH--FVLSHLP 181 (451)
Q Consensus 104 ~sy~~~~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~--~pl~~~~ 181 (451)
++..|..++-+|+++. ++..+...+...+....-..-.+..++.+++ ++......+..+.. +.....+
T Consensus 94 ~~l~~~ir~~~~~~~~-~~~~~~~~l~~~~~~~~e~~G~a~al~ll~g---------ip~~~~v~i~~~~~~~~l~l~~~ 163 (439)
T PRK00701 94 RDLAQACRDRYPRPVV-WFLWIQAELAIMATDLAEVIGAAIALKLLFG---------IPLLQGALITALDTFLILMLQRR 163 (439)
T ss_pred CCHHHHHHHHCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHHHhc
Confidence 3899999999997655 5555555555555555555544444433321 22233333333222 2212345
Q ss_pred CchhHHHHHH
Q 013039 182 NFNAIAGVSL 191 (451)
Q Consensus 182 ~l~~l~~~s~ 191 (451)
+.+.+.++..
T Consensus 164 ~y~~~E~i~~ 173 (439)
T PRK00701 164 GFRPLEAIIG 173 (439)
T ss_pred CccHHHHHHH
Confidence 6777777754
No 80
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=97.59 E-value=0.034 Score=57.20 Aligned_cols=150 Identities=15% Similarity=0.252 Sum_probs=83.7
Q ss_pred HHHHhhhhccc-cccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCCccCCHHHHHHHHhcccccchhh
Q 013039 47 FHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM--VPGKRFDRYHELGQHAFGEKLGLYIV 123 (451)
Q Consensus 47 ~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~--~~~~~~~sy~~~~~~~~G~~~g~~~~ 123 (451)
.-.+-.+.|.= .+=|-+....+|..-+.++..++++++..|..-+...+.. .|+.+ +|.-+.+ .+||.+| ..+
T Consensus 122 LPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGG--sYfmISR-sLGPEFG-gAV 197 (1075)
T KOG2082|consen 122 LPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGG--SYFMISR-SLGPEFG-GAV 197 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC--eeEEEec-ccCcccc-cee
Confidence 33444445432 3335677788899889999999999988888887776542 45555 7766554 5677778 666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHH-HHHHhh--cC-----CC-CCc-chhhHHHHHHHHHHHHhc--CCCchhHHHHHH
Q 013039 124 VPQQLIVEVGVCIVYMVTGGKSLHK-VHELLC--KE-----PC-KEI-KLSYFIMIFASVHFVLSH--LPNFNAIAGVSL 191 (451)
Q Consensus 124 ~~~~~~~~~g~~~~y~~~~~~~l~~-~~~~~~--~~-----~~-~~~-~~~~~~~i~~~i~~pl~~--~~~l~~l~~~s~ 191 (451)
.+|..+-.-.....|+.-.-+.+-. ++|... +. +. ... +-+.+..++++++...++ .|-+++++.++.
T Consensus 198 GlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~A~vfL 277 (1075)
T KOG2082|consen 198 GLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNKFAPVFL 277 (1075)
T ss_pred eehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 6666555444555566654444433 333211 10 00 011 234444444444433333 344555555555
Q ss_pred HHHHHHHHH
Q 013039 192 AAAVMSLSY 200 (451)
Q Consensus 192 ~~~~~~v~~ 200 (451)
..++++++.
T Consensus 278 ~CVILSIla 286 (1075)
T KOG2082|consen 278 ACVILSILA 286 (1075)
T ss_pred HHHHHHHHH
Confidence 555554443
No 81
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.57 E-value=0.0033 Score=61.96 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=86.7
Q ss_pred cCCChHHHHHHHHHhhhhccc-cccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCc-cCCH-----HHH
Q 013039 37 SRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKR-FDRY-----HEL 109 (451)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~-~~sy-----~~~ 109 (451)
+++.|.+|+.+..+.+.+|.| ++.+|.+.+..| ..++.++.+.+++..-+.+.-.-...++.+.+ +.+| ..+
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi 122 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYI 122 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHH
Confidence 345899999999999999998 999999976665 55777777777666655554444444332211 1236 777
Q ss_pred HHHHhcccccchhhHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHH
Q 013039 110 GQHAFGEKLGLYIVVPQQLIVEVG-VCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAG 188 (451)
Q Consensus 110 ~~~~~G~~~g~~~~~~~~~~~~~g-~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 188 (451)
-+...||+.| .+..++ .+..++ .+.......++.++..+ +.+ .+...+...++.-+.....++.+..
T Consensus 123 ~~gl~~k~lg-~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~---------~~~-~~v~~i~l~~l~~~vi~GGik~Ia~ 190 (425)
T TIGR00835 123 KKGLGMRWLA-VLFAVF-LIASFGIGNMVQANAIASALSNAF---------NVP-KLVTGIVLTVLTALIIFGGLKRIAK 190 (425)
T ss_pred HHHhCccHHH-HHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc---------CCc-HHHHHHHHHHHHHHHHhcCchHHHH
Confidence 7777776555 444444 222222 22333333333333211 122 2222233333333445568888888
Q ss_pred HHHHHHHHHH
Q 013039 189 VSLAAAVMSL 198 (451)
Q Consensus 189 ~s~~~~~~~v 198 (451)
++...+..+.
T Consensus 191 v~~~lvP~m~ 200 (425)
T TIGR00835 191 ISSVVVPFMA 200 (425)
T ss_pred HHHHHHHHHH
Confidence 8877776544
No 82
>PRK15015 carbon starvation protein A; Provisional
Probab=97.25 E-value=0.0049 Score=62.71 Aligned_cols=100 Identities=26% Similarity=0.265 Sum_probs=73.4
Q ss_pred HHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHh-hhhcCCCccCCHHHHHHHHhcccccch
Q 013039 43 WYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEM-HEMVPGKRFDRYHELGQHAFGEKLGLY 121 (451)
Q Consensus 43 ~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~-~~~~~~~~~~sy~~~~~~~~G~~~g~~ 121 (451)
+-.+-+=+.++-|+|.+.=|..-.+.||.++.+++++.+++.---..+..-. +.|+++ | |.+|++++..|++.| .
T Consensus 86 ~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~G-r--Sig~ia~~~iG~~~~-~ 161 (701)
T PRK15015 86 KVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDG-R--SLGELVKEEMGPTAG-V 161 (701)
T ss_pred cchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCC-c--cHHHHHHHHhhHHHH-H
Confidence 4566677889999999999998889999999999888766654444444433 333443 3 999999999998644 7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhH
Q 013039 122 IVVPQQLIVEVGVCIVYMVTGGKSL 146 (451)
Q Consensus 122 ~~~~~~~~~~~g~~~~y~~~~~~~l 146 (451)
+..+..++.+......+...+.+.+
T Consensus 162 lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 162 IALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766666666666555555
No 83
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=97.21 E-value=0.13 Score=50.34 Aligned_cols=231 Identities=13% Similarity=0.106 Sum_probs=109.9
Q ss_pred CCHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhc--CC
Q 013039 104 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSH--LP 181 (451)
Q Consensus 104 ~sy~~~~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~~ 181 (451)
++..|..++.+|++++ +...+...+.......+-....+..++.++ .++...+..+..+..+.+.+ .+
T Consensus 42 ~~l~~~~~~~~g~~~~-~~~~~~~~l~~~~~~~~~~~g~a~al~ll~---------g~~~~~~~~~~~~~~~~ll~~~~~ 111 (358)
T PF01566_consen 42 KGLAEGIRERFGRGWA-WFLWILIFLANIATQAAEIIGIAIALNLLF---------GIPLWIWVLLVAVIAILLLWLSSG 111 (358)
T ss_pred CChhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------CCCcHHHHHHHHHHHHHHHHHHhc
Confidence 3888999999998777 666666666666666666655555554443 13335555555554444444 66
Q ss_pred CchhHHHHHHHHHHHH-HHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeec--ccccccc
Q 013039 182 NFNAIAGVSLAAAVMS-LSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVL--EIQATIP 258 (451)
Q Consensus 182 ~l~~l~~~s~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~--~i~~~m~ 258 (451)
+.+.+.++...-+... +.++...+. .+.+..+...+.. .|..++...+...++.+-....-|.... ....|-+
T Consensus 112 ~y~~~E~~~~~lv~~m~l~f~~~~~~---~~p~~~~~~~g~~-~P~~p~~~~~~~~valiGttv~p~~lf~~s~~~~~k~ 187 (358)
T PF01566_consen 112 GYRRLERILKVLVAVMVLAFLIAAFI---VHPDWGEVARGLV-VPSIPGPGSLLFAVALIGTTVMPHNLFLHSSLVQEKG 187 (358)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHh---cchhHHHHhhhcc-CCCCcchhHHHHHHHHHHHhhhHHHHHHHHHHhhhcc
Confidence 7888877766555543 222222221 1111111111111 0111112344444444443333332221 1222211
Q ss_pred cCC-CC-CC--CCCCchHHHHHHHHHHHHHHHHHhhhhhhcc-Cc--ch--h---HHhhCCCChhHHHHHHHHHHHHHHH
Q 013039 259 STP-EK-PS--KGPMWRGVVVAYIVVALCYFPVALIGYWMFG-NK--VE--D---NILLSLEKPTWLIVMANFFVVVHVI 326 (451)
Q Consensus 259 ~~~-~~-p~--~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg-~~--~~--~---~il~~~~~~~~~~~~~~~~~~i~~~ 326 (451)
.+. ++ ++ .+..+.-...++.+..++-..+-+.+...+. +. .. . ..+...-.+++...+..+....+.+
T Consensus 188 ~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~~~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~f 267 (358)
T PF01566_consen 188 WTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSEVETAAQAAQALEPLLGSPWARYLFAIGLFAAGF 267 (358)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHhcCchHHHHhHHHHHHHHHH
Confidence 000 00 00 1112233445555555544444444444442 11 11 1 2233222214666676777777777
Q ss_pred hhhccccccHHHHHHHHhhhcc
Q 013039 327 GSYQIYAMPVFDMIETLLVKKL 348 (451)
Q Consensus 327 ~s~pl~~~~~~~~~~~~~~~~~ 348 (451)
.+.+.........+.+.++.+.
T Consensus 268 ss~i~~~~~~~~~~~~~~~~~~ 289 (358)
T PF01566_consen 268 SSSITATLAGAYVLADFLGWRW 289 (358)
T ss_pred hhHHHhccccceehHhhhcCCC
Confidence 7777777777777777775543
No 84
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.0019 Score=64.48 Aligned_cols=237 Identities=18% Similarity=0.208 Sum_probs=133.2
Q ss_pred cCCChHHHHHHHHH-hhhhcc-ccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCCccCCHHHHHHH
Q 013039 37 SRNAKWWYSAFHNV-TAMVGA-GVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM--VPGKRFDRYHELGQH 112 (451)
Q Consensus 37 ~~~~s~~~~~~~l~-~~~iG~-GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~--~~~~~~~sy~~~~~~ 112 (451)
+=+-+|++.++.-. =++.|. =.|=+++...++|...+++++.+...++..|..--....++ .++.+ .|. +..+
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg--~yf-lis~ 103 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG--VYF-LISR 103 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc--EEE-EEEe
Confidence 33567776665432 223332 14557899999999999999888777776665544443332 22222 343 3444
Q ss_pred HhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcC--CCchhHHHHH
Q 013039 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL--PNFNAIAGVS 190 (451)
Q Consensus 113 ~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--~~l~~l~~~s 190 (451)
.+|+..| ..+.+...+.+-..+..|.+-+++.+..+++...... ++. ...+..++.+..+.. ++..+++.+-
T Consensus 104 slg~efg-gsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~~~---i~g--i~~vt~~ill~i~~ag~~w~~k~q~~l 177 (643)
T KOG2083|consen 104 SLGPEFG-GSIGIIYAFANAVATAMYVVGFAESVAHLFETESKEM---IDG--IGSVTVLILLAINVAGVEWEAKLQIVL 177 (643)
T ss_pred ccccccc-chhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccHHH---hcc--hhHHHHHHHHHhhhccchhHHHHHHHH
Confidence 5677778 7777888888888888899999999999888653211 111 112222222222222 2333333222
Q ss_pred HHHHHHHHHHHHHHhhheeeeccCC-C-ccccc--cccCcccch---hhHHHHhhhHhhhcccceeecccccccccCCCC
Q 013039 191 LAAAVMSLSYSTIAWSASVRKGVQP-D-VAYGY--KAKTAAGTV---FNFFSALGDVAFAYAGHNVVLEIQATIPSTPEK 263 (451)
Q Consensus 191 ~~~~~~~v~~~~~~~~~~~~~~~~~-~-~~~~~--~~~~~~~~~---~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~ 263 (451)
.+-+..++. --++...+.....+ + ..+.. -..+...++ .+++..++++.=+..|.-.=..+..++ |+
T Consensus 178 l~il~iai~--~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL----~~ 251 (643)
T KOG2083|consen 178 LLILLIAIA--DFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDL----KD 251 (643)
T ss_pred HHHHHHHHH--HhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCC----CC
Confidence 222221111 00111111111000 0 00000 000111122 367888888888887777777778888 89
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHh
Q 013039 264 PSKGPMWRGVVVAYIVVALCYFPVAL 289 (451)
Q Consensus 264 p~~~~~~~~~~~~~~~~~~~Y~~~~~ 289 (451)
|++. +++....+....+.+|..+..
T Consensus 252 Pq~~-IP~GaL~Ai~vst~~yl~~i~ 276 (643)
T KOG2083|consen 252 PQKA-IPLGALLAIGVSTLLYLIFIA 276 (643)
T ss_pred chhh-cccchhhhhhhhhhhhhhhhh
Confidence 9887 899999999999999966543
No 85
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=97.18 E-value=0.18 Score=49.74 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=83.7
Q ss_pred cccCCChHHHHHHHHHhhhhccc-cccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCC---Cc--cCCHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPG---KR--FDRYHE 108 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~---~~--~~sy~~ 108 (451)
+++++.|.+|+.+..+.+.+|.| |.....|..-.| +.++.++.+.+++..-+-..=.-.+.+++. ++ .-.-..
T Consensus 14 ~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG-PGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~y 92 (416)
T PF01235_consen 14 EEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGG-PGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMY 92 (416)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHH
Confidence 34568999999999999999999 777888887655 447777777777655443322222322221 11 112345
Q ss_pred HHHHHhcccccchhhHHHHHHHHHHH--HHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhH
Q 013039 109 LGQHAFGEKLGLYIVVPQQLIVEVGV--CIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAI 186 (451)
Q Consensus 109 ~~~~~~G~~~g~~~~~~~~~~~~~g~--~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 186 (451)
+.++.+|.||...+..++ .+..++. .......+++.+++.+ ++++. ...+...++.-+.....+|++
T Consensus 93 yi~~gl~~k~la~~fai~-~~~~~~~~~~~~Q~nsi~~~~~~~f---------~i~~~-~~gi~l~~l~~~vi~GGikrI 161 (416)
T PF01235_consen 93 YIEKGLGSKWLAILFAIF-LIIAFGIGFNMVQANSIADALSSAF---------GIPPW-ITGIILAILVALVIFGGIKRI 161 (416)
T ss_pred HHHHHhccchHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhhc---------cccHH-HHHHHHHHHHHHHHHcchhHH
Confidence 677788876654554444 2222222 2333333333333222 22322 233333334445566788888
Q ss_pred HHHHHHHHHH
Q 013039 187 AGVSLAAAVM 196 (451)
Q Consensus 187 ~~~s~~~~~~ 196 (451)
..++..-+-+
T Consensus 162 ~~v~~~lVP~ 171 (416)
T PF01235_consen 162 AKVSEKLVPF 171 (416)
T ss_pred HHHHHHHHHH
Confidence 8777555543
No 86
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=97.17 E-value=0.19 Score=49.80 Aligned_cols=331 Identities=16% Similarity=0.188 Sum_probs=155.6
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHH-hhC--hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhccc
Q 013039 41 KWWYSAFHNVTAMVGAGVLSLPYAMA-QLG--WGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEK 117 (451)
Q Consensus 41 s~~~~~~~l~~~~iG~GiL~lP~a~~-~~G--~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~~ 117 (451)
.....-+.++.-..|+|-|-.|-... ++| |..+.+-+++.++.--.-+ -.+....+. +++++++++ ||+
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lg----via~~~~~~---~~~~l~~~v-~~~ 75 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLG----VIAVAKSGG---GIEDLASRV-GPK 75 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHH----HHHHhhcCC---CHHHHhccc-CcH
Confidence 34566778889999999999985543 334 7777777776665433222 221111121 788888876 455
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCC--chhHHHHHHHHHH
Q 013039 118 LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPN--FNAIAGVSLAAAV 195 (451)
Q Consensus 118 ~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~--l~~l~~~s~~~~~ 195 (451)
.+..+..+... ..|-..+-=...+-..+..+....+. ...++.....+++..+.+-+++.++ ++.+.++-.-.++
T Consensus 76 f~~if~~~i~l--~IGP~~aiPRtaa~sfe~~i~p~~~~-~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL 152 (427)
T PF05525_consen 76 FALIFTILIYL--SIGPLFAIPRTAAVSFEMGIAPFFPE-NSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILL 152 (427)
T ss_pred HHHHHHHHHHH--HHHhcccCcchhhhhHHHhhhccCCc-ccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Confidence 55222211111 11111111111111222111111111 2234445555666666666666543 4444443333333
Q ss_pred HHHHHHHHHhhheeeeccCC--CccccccccCcccch---hhHHHHhhhHhhhcccceeecccccccccCCCCCCCC--C
Q 013039 196 MSLSYSTIAWSASVRKGVQP--DVAYGYKAKTAAGTV---FNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKG--P 268 (451)
Q Consensus 196 ~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~--~ 268 (451)
..+.++++..+.+...+ ..+..+...+-..++ .+-..+++-+.|+-.- ..-.++.. .+|+++. .
T Consensus 153 ---~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iI----i~~i~~~g--~~~~k~~~~~ 223 (427)
T PF05525_consen 153 ---ILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIII----INAIRQKG--YKDKKEIKKY 223 (427)
T ss_pred ---HHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHH----HHHHHHhC--CCCHHHHHHH
Confidence 22333333333332111 111111111101111 2334455555554332 22222220 0112111 1
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhhhcc---Ccch-hHHhhCCCC---hhHHHHHHHHHHHHHHHhhhccccccHHHHHH
Q 013039 269 MWRGVVVAYIVVALCYFPVALIGYWMFG---NKVE-DNILLSLEK---PTWLIVMANFFVVVHVIGSYQIYAMPVFDMIE 341 (451)
Q Consensus 269 ~~~~~~~~~~~~~~~Y~~~~~~gy~~fg---~~~~-~~il~~~~~---~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~ 341 (451)
..++-.++...-.++|...+..|...-+ ++.+ +.++....+ ++....+..+.+.++++++-.-+...+.|.++
T Consensus 224 ~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~ 303 (427)
T PF05525_consen 224 TIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFS 303 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223346666777788888777765443 2232 344443321 23455677777888888877777777777777
Q ss_pred HHhhhccCCCchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 013039 342 TLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAI 405 (451)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~ 405 (451)
+..+ | .+...+ ..+..+.++++|. -.++.++++ ....+.++.|....+..
T Consensus 304 ~~~~-k----isY~~~---v~i~~i~S~~ian--~Gl~~Ii~~----s~PiL~~iYP~~IvLIl 353 (427)
T PF05525_consen 304 ELFP-K----ISYKVW---VIIFTIFSFIIAN--LGLDQIIKI----SVPILMFIYPVAIVLIL 353 (427)
T ss_pred HHhc-c----cChHHH---HHHHHHHHHHHHH--hCHHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 7765 2 111211 2222233344432 236677766 44778888888776643
No 87
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.07 E-value=0.36 Score=47.52 Aligned_cols=238 Identities=13% Similarity=0.110 Sum_probs=115.5
Q ss_pred CChHHHHHHHHHhhhhccc-cccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhh--hcCCCccCCHHHHHHHHhc
Q 013039 39 NAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHE--MVPGKRFDRYHELGQHAFG 115 (451)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~--~~~~~~~~sy~~~~~~~~G 115 (451)
-.|...-+...+++.+|-| +--.||...+.|-..-.+. .++..+..=--.++.|... +.+.+...+|+++.. +
T Consensus 8 w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~-yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~---~ 83 (439)
T COG0733 8 WSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLP-YLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP---K 83 (439)
T ss_pred hhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHH-HHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc---C
Confidence 3455778888999999999 8889998888875533333 3333333333344555432 222222346666664 3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCC---CC-------Cc-chhhHHHHH---HHHHHHHhcCC
Q 013039 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEP---CK-------EI-KLSYFIMIF---ASVHFVLSHLP 181 (451)
Q Consensus 116 ~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~---~~-------~~-~~~~~~~i~---~~i~~pl~~~~ 181 (451)
++ . ...........+..+.-|.++.+-.+..+.....+.- .. +. ++....... ..++..+...|
T Consensus 84 ~~-~-~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~ 161 (439)
T COG0733 84 KK-W-EWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSR 161 (439)
T ss_pred cc-c-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 32 2 2334444555555666666666666666555443210 00 00 111111111 11112223344
Q ss_pred Cchh-HHHHHHHHHHHHHHHHHHHhhheeee-ccCCCcccccccc-CcccchhhHHHHhhhHhhhccc-ceeeccccccc
Q 013039 182 NFNA-IAGVSLAAAVMSLSYSTIAWSASVRK-GVQPDVAYGYKAK-TAAGTVFNFFSALGDVAFAYAG-HNVVLEIQATI 257 (451)
Q Consensus 182 ~l~~-l~~~s~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~-h~~~~~i~~~m 257 (451)
.+++ ..+.+.+-+-..+...+.++++.+.. |-.++.+.-+.++ ..-.+++....+++-..|+..- .....++...+
T Consensus 162 GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL 241 (439)
T COG0733 162 GVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYL 241 (439)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444 55555555554444444444444432 2122222211111 1122356678899999998765 45555566666
Q ss_pred ccCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013039 258 PSTPEKPSKGPMWRGVVVAYIVVALCYFPVA 288 (451)
Q Consensus 258 ~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~ 288 (451)
+|+ .++.+........-+.+=.+.|
T Consensus 242 ----~k~--~~l~~sa~~v~~~n~~~s~lAG 266 (439)
T COG0733 242 ----SKK--SDLVSSALSIVLLNTLISLLAG 266 (439)
T ss_pred ----Ccc--cchhhhHHHHHHHHHHHHHHHH
Confidence 222 2244554444444444434433
No 88
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=96.89 E-value=0.58 Score=47.08 Aligned_cols=104 Identities=22% Similarity=0.252 Sum_probs=76.2
Q ss_pred ChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHh-hhhcCCCccCCHHHHHHHHhcccc
Q 013039 40 AKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEM-HEMVPGKRFDRYHELGQHAFGEKL 118 (451)
Q Consensus 40 ~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~-~~~~~~~~~~sy~~~~~~~~G~~~ 118 (451)
.+.+..+-+=+.++-|+|.+.=|..-++.||.++.+++++.+++.---...++-. +.|+++. |.+|++++.+|++.
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~---Si~~ia~~~lG~~a 128 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGK---SIGEIAGKYLGRTA 128 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCc---cHHHHHHHHhhhhH
Confidence 3445667778889999999999999999999999999888777765555555443 3344443 99999999999976
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhHH
Q 013039 119 GLYIVVPQQLIVEVGVCIVYMVTGGKSLH 147 (451)
Q Consensus 119 g~~~~~~~~~~~~~g~~~~y~~~~~~~l~ 147 (451)
| .+..+..++..............+.+.
T Consensus 129 ~-~~~~~~~l~iliiv~Avfa~vv~~~l~ 156 (575)
T COG1966 129 K-VFFLLLALILLILVGAVFAAVIAKLLA 156 (575)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6 777776666666555555555444443
No 89
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.27 E-value=1.4 Score=43.72 Aligned_cols=289 Identities=13% Similarity=0.110 Sum_probs=145.8
Q ss_pred ccCCHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCC
Q 013039 102 RFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLP 181 (451)
Q Consensus 102 ~~~sy~~~~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~ 181 (451)
++++..|....-++.+.-|++..+.-.+..+.-.++.+.-.+..+.-+++ .+...-.++..+++..-...-
T Consensus 102 GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g---------v~~~vgv~ig~ilm~~Yvv~G 172 (529)
T COG4147 102 GKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG---------VPYHVGVVIGGILMMVYVVLG 172 (529)
T ss_pred CCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC---------CCceeehhhHhHHHHHHHHhc
Confidence 35699998888888777777777766666666666677767666666654 222333444445555555667
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH-hhheeeeccCCC--------cccc----c--cccCcccchhhHHHHhhhHhhhccc
Q 013039 182 NFNAIAGVSLAAAVMSLSYSTIA-WSASVRKGVQPD--------VAYG----Y--KAKTAAGTVFNFFSALGDVAFAYAG 246 (451)
Q Consensus 182 ~l~~l~~~s~~~~~~~v~~~~~~-~~~~~~~~~~~~--------~~~~----~--~~~~~~~~~~~~~~~~~~~~faf~~ 246 (451)
..+...|.+.+--+..+....+. +......+..+. .+.. . ++-....++.+++...-..++...+
T Consensus 173 GM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAg 252 (529)
T COG4147 173 GMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAG 252 (529)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCC
Confidence 78888888776555333211111 111111111110 0000 0 0001123444554444445565555
Q ss_pred -ceeecccccccccCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhc---c-----------------CcchhHHhh
Q 013039 247 -HNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMF---G-----------------NKVEDNILL 305 (451)
Q Consensus 247 -h~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~f---g-----------------~~~~~~il~ 305 (451)
.+.+...+.-+ +- +.-++.+..+..+...+|+..-+.|+.+- + |...+-+..
T Consensus 253 LPHil~RFfTvp-----~~--k~AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~~~w~~~~D~~~~gi~~ 325 (529)
T COG4147 253 LPHILMRFFTVP-----DA--KEARKSVFWATGFIGIFYILTPIIGAGARLLVGTNPVGKPAWAAKWIKTGDANGDGIGG 325 (529)
T ss_pred CCeEEEEEEecC-----cH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhccccccccccccccc
Confidence 34444444433 22 22448899999999999999877776532 1 211111110
Q ss_pred --C---------CCChhHHHH-H--HHHHHHHHHHhhhcccc--ccHHHHHHHHhhhccCCCchhHHHHHHHHHHHHHHH
Q 013039 306 --S---------LEKPTWLIV-M--ANFFVVVHVIGSYQIYA--MPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTM 369 (451)
Q Consensus 306 --~---------~~~~~~~~~-~--~~~~~~i~~~~s~pl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (451)
| +.++++..- + ..+...++......+.. ....|...+.++++.++++.....-+...+..+...
T Consensus 326 ~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~vik~~ase~~~v~vaRi~~v~~~vva~ 405 (529)
T COG4147 326 WTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAMVIKKGATEKKEVRVARIAVVILGVVAI 405 (529)
T ss_pred ccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhCCCCCccceehhHHHHHHHHHHHHH
Confidence 0 111222211 1 22222222222222222 113444555555553322222222223334444555
Q ss_pred HHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcC
Q 013039 370 FIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP 408 (451)
Q Consensus 370 ~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~ 408 (451)
.+++.-|+ .+..++|--++......+|.+++=..-||
T Consensus 406 ~lgi~~~g--nVaflVa~AF~lAaSa~fPvivlglfWKr 442 (529)
T COG4147 406 LLGILPPG--NVAFLVALAFALAASANFPVIVLGLFWKR 442 (529)
T ss_pred HheecCCc--cHHHHHHHHHHHHHHcccchhhHHHHHhh
Confidence 56665566 77777787777778888998876544443
No 90
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=96.10 E-value=1.6 Score=43.47 Aligned_cols=328 Identities=12% Similarity=0.086 Sum_probs=149.4
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHH-hhC--hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhccc
Q 013039 41 KWWYSAFHNVTAMVGAGVLSLPYAMA-QLG--WGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEK 117 (451)
Q Consensus 41 s~~~~~~~l~~~~iG~GiL~lP~a~~-~~G--~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~~ 117 (451)
.....-+.++.-..|+|=|-.|-... ++| |..+.+-+++.++.- =++.-.+....+ + ++++++++. ||+
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~Vgl----PlLgiiava~~~-g--~~~~l~~rv-~~~ 80 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGL----PVLTVVALAKVG-G--GVDSLSTPI-GKV 80 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHH----HHHHHHHHhhcC-C--CHHHHhhhc-chH
Confidence 45777888999999999999985543 444 666666666554432 222222221222 2 788888877 455
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCC--chhHHHHHHHHHH
Q 013039 118 LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPN--FNAIAGVSLAAAV 195 (451)
Q Consensus 118 ~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~--l~~l~~~s~~~~~ 195 (451)
.+..+ ...+. ...|=+.+-=...+...+.-+....++ +........+++..+.+.+++.++ ++.+.++-.-.++
T Consensus 81 f~~~f-~~~i~-l~IGP~~aiPRtaavsfEm~i~p~~~~--~~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL 156 (439)
T PRK15433 81 AGVLL-ATVCY-LAVGPLFATPRTATVSFEVGIAPLTGD--SALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKI 156 (439)
T ss_pred HHHHH-HHHHH-HHHhhccccCCccccchhheeeccCCc--ccHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHH
Confidence 55222 21111 111111000001111111101111110 012222334455555566666442 4444444433333
Q ss_pred HHHHHHHHHhhheeeeccCC--CccccccccCcc---cchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCC--C
Q 013039 196 MSLSYSTIAWSASVRKGVQP--DVAYGYKAKTAA---GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKG--P 268 (451)
Q Consensus 196 ~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~--~ 268 (451)
.. +.++++..+.+...+ ..+..+...+-. .+-.+-..+++-..|+-.-...+- .+.. +++++. .
T Consensus 157 ~~---l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i~--~~G~----~~~~~~~k~ 227 (439)
T PRK15433 157 IA---LVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAAR--SRGV----TEARLLTRY 227 (439)
T ss_pred HH---HHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HcCC----CCHHHHHHH
Confidence 22 222223333321111 010111001001 111345666777777644333321 1112 222221 1
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhhh---ccCc-chhHHhhCCC---ChhHHHHHHHHHHHHHHHhhhccccccHHHHHH
Q 013039 269 MWRGVVVAYIVVALCYFPVALIGYWM---FGNK-VEDNILLSLE---KPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIE 341 (451)
Q Consensus 269 ~~~~~~~~~~~~~~~Y~~~~~~gy~~---fg~~-~~~~il~~~~---~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~ 341 (451)
..++-.++.....++|...+..|... +++. ..+.++.... -+++...+..+.+.+.++++-.-....+.+-++
T Consensus 228 t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~ 307 (439)
T PRK15433 228 TVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFA 307 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233466677778888888887654 3322 2334443321 124556667777777777777776666666666
Q ss_pred HHhhhccCCCchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHH
Q 013039 342 TLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLA 404 (451)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~ 404 (451)
+.+. .++. ....+..+.++.++. -.++.++++ ....+.++.|...-+.
T Consensus 308 ~~~~------isY~---~~v~i~~l~S~~lSn--~G~~~II~~----s~PiL~~iYP~~IvLi 355 (439)
T PRK15433 308 QYVP------LSYR---TLVFILGGFSMVVSN--LGLSQLIQI----SVPVLTAIYPPCIALV 355 (439)
T ss_pred hhcC------CcHH---HHHHHHHHHHHHHHH--hHHHHHHHH----HHHHHHHHhHHHHHHH
Confidence 6542 1111 222223333333332 125566555 3466777778776554
No 91
>PHA02764 hypothetical protein; Provisional
Probab=95.70 E-value=1.9 Score=40.51 Aligned_cols=96 Identities=13% Similarity=-0.014 Sum_probs=66.2
Q ss_pred cccCCChHHHHHHHHHhhhhccccccHHHHHHhh--ChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQL--GWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~--G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~ 112 (451)
..-|+.+.+++++.-++.+-+....+.|+-+... |.. .....++.++++...+....|...+.|+.+ .-....++
T Consensus 9 GLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAG--GdYVYISR 85 (399)
T PHA02764 9 GIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNG--GDYAYIRT 85 (399)
T ss_pred CceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ceEEEhHH
Confidence 3457788899998666554433344667644443 433 445567778888888889999888888876 66677999
Q ss_pred HhcccccchhhHHHHHHHHHHH
Q 013039 113 AFGEKLGLYIVVPQQLIVEVGV 134 (451)
Q Consensus 113 ~~G~~~g~~~~~~~~~~~~~g~ 134 (451)
++||++| ++..+..+......
T Consensus 86 AFGP~~G-FLvG~a~WLtl~~G 106 (399)
T PHA02764 86 AFSSKFY-TIFGISLWLTYVLS 106 (399)
T ss_pred hhCccHH-HHHHHHHHHHHHhh
Confidence 9999777 77666666554443
No 92
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.78 E-value=0.3 Score=48.41 Aligned_cols=81 Identities=15% Similarity=0.347 Sum_probs=63.9
Q ss_pred CHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCch
Q 013039 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFN 184 (451)
Q Consensus 105 sy~~~~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~ 184 (451)
=..++++..+|+ .|..+..+...+.|+-++++.....+|++++..+ +.+++.|..++.++-+.++.. +++
T Consensus 262 lL~~i~~~~~G~-~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~--------kisY~~~v~i~~i~S~~ian~-Gl~ 331 (427)
T PF05525_consen 262 LLSQIANHLFGS-AGQILLGIIVFLACLTTAIGLISACAEYFSELFP--------KISYKVWVIIFTIFSFIIANL-GLD 331 (427)
T ss_pred HHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccChHHHHHHHHHHHHHHHHh-CHH
Confidence 477889999996 7889999999999999999999999999999887 356677877777766666555 566
Q ss_pred hHHHHHHHHHH
Q 013039 185 AIAGVSLAAAV 195 (451)
Q Consensus 185 ~l~~~s~~~~~ 195 (451)
.+-.++.--+.
T Consensus 332 ~Ii~~s~PiL~ 342 (427)
T PF05525_consen 332 QIIKISVPILM 342 (427)
T ss_pred HHHHHHHHHHH
Confidence 66555544333
No 93
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.47 E-value=0.45 Score=46.61 Aligned_cols=82 Identities=16% Similarity=0.367 Sum_probs=61.7
Q ss_pred CCHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCc
Q 013039 104 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNF 183 (451)
Q Consensus 104 ~sy~~~~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l 183 (451)
.-..+++++.||+ .|..+..+...+.+++++++.....+++++.+.+ +.+++.|.++..+..+.++.. ++
T Consensus 255 ~~l~~~a~~~~G~-~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~--------k~~y~~~v~~~~l~s~~ia~~-Gl 324 (378)
T TIGR00796 255 QILSAYSQHLFGS-LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP--------KLSYKTWVIVFTLFSFIVANL-GL 324 (378)
T ss_pred HHHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHh-CH
Confidence 3678899999997 7889999999999999999999999999888754 245566666666555554443 66
Q ss_pred hhHHHHHHHHHH
Q 013039 184 NAIAGVSLAAAV 195 (451)
Q Consensus 184 ~~l~~~s~~~~~ 195 (451)
+++-.++..-+.
T Consensus 325 ~~Ii~~~~PvL~ 336 (378)
T TIGR00796 325 TQIISISIPVLM 336 (378)
T ss_pred HHHHHHHHHHHH
Confidence 666665544444
No 94
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=94.16 E-value=6.7 Score=39.09 Aligned_cols=296 Identities=13% Similarity=0.115 Sum_probs=142.5
Q ss_pred cccCCChHHHHHHHHHhhhhccccccHHHHHHhhC--hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCc-cCCHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLG--WGPGVAILILSWIITLYTLWQMVEMHEMVPGKR-FDRYHELGQ 111 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G--~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~-~~sy~~~~~ 111 (451)
+++|.-|+++-+..-....++.+..-+....-+.| |.-+++..++.-.+ +...+ ....+++.. +.+++-..|
T Consensus 51 ~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~---~~~f~--~lns~~G~~yhIsFpv~sR 125 (572)
T KOG2466|consen 51 PSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLF---TAIFL--VLNSRPGSDYHISFPVLSR 125 (572)
T ss_pred cccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHH---HHHHH--HHccCCCcccccceeeeee
Confidence 34567799999999999999998888877766777 44444444332222 22222 222234432 346777777
Q ss_pred HHhcc---cccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCC----C----CCcchhh--HHHHHHHHHHHHh
Q 013039 112 HAFGE---KLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEP----C----KEIKLSY--FIMIFASVHFVLS 178 (451)
Q Consensus 112 ~~~G~---~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~----~----~~~~~~~--~~~i~~~i~~pl~ 178 (451)
..||- .++ .+..+...+..+|+ ..-+.++.+..+++...+.. + ....... ..+++-++.+|+.
T Consensus 126 ~sFGiygS~~p-Ii~R~vma~vwYg~---~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~ 201 (572)
T KOG2466|consen 126 SSFGIYGSLWP-IINRVVMACVWYGV---NAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFY 201 (572)
T ss_pred eehhhhHhHHH-HHHHHHHHHhhhhh---hhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhhee
Confidence 77774 122 34444445555554 33345566666665544211 0 0111222 2345556667776
Q ss_pred cCC--CchhHHHHHHHHHHHHHHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcc-cceeeccccc
Q 013039 179 HLP--NFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYA-GHNVVLEIQA 255 (451)
Q Consensus 179 ~~~--~l~~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~-~h~~~~~i~~ 255 (451)
+.| .++++-..+.+......+ .+++....-.+|..+-.+...........| .+..++.-.+=.|. ...|.|...+
T Consensus 202 ~~~p~~ir~lf~~ka~~t~fA~~-g~LIw~l~kAhG~G~l~~~~st~~gs~~aW-a~~~~i~~~~~~fstl~~N~pDFsR 279 (572)
T KOG2466|consen 202 WFPPYKIRHLFTWKAVLTPFAAF-GFLIWLLKKAHGLGHLFDSKSTVSGSAHAW-AFVRSIMSCIANFSTLIVNAPDFSR 279 (572)
T ss_pred eccHHHhhhHHHHHHhhhHHHHH-HHHHHHHHhcCCccccccCCCcccccchhH-HHHHHHHHHHhccchhhccCchhHh
Confidence 664 344444444444443222 222222222333211111100001111222 23333333332332 2466677766
Q ss_pred ccccCCCCCCCCCCchHHHHHHHHHHHHH----HHHHhhhhhhccCcc--hhHHhhCCCC-----h-hHHHHHHHHHHHH
Q 013039 256 TIPSTPEKPSKGPMWRGVVVAYIVVALCY----FPVALIGYWMFGNKV--EDNILLSLEK-----P-TWLIVMANFFVVV 323 (451)
Q Consensus 256 ~m~~~~~~p~~~~~~~~~~~~~~~~~~~Y----~~~~~~gy~~fg~~~--~~~il~~~~~-----~-~~~~~~~~~~~~i 323 (451)
-- |+|.+.. ..-.++..+.+.+- ++.+..++..||.+- +-+++.++-+ + ......+.++.++
T Consensus 280 F~----ksp~a~~--~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~~~y~~G~RAgvFfi~~~f~l 353 (572)
T KOG2466|consen 280 FA----KSPNAIW--WGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLDTNYSAGARAGVFFIGFGFAL 353 (572)
T ss_pred hc----CCCCccc--hhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhccccccccchhhhHHHHHHHH
Confidence 66 7776544 33333334444444 444556788898753 3355555422 1 1234445555555
Q ss_pred HHHh-hhccccccHHHHHHHHhhhc
Q 013039 324 HVIG-SYQIYAMPVFDMIETLLVKK 347 (451)
Q Consensus 324 ~~~~-s~pl~~~~~~~~~~~~~~~~ 347 (451)
+.+. +.--..++.-.-+..++.+-
T Consensus 354 aql~~NISan~vaagnDl~~L~Pky 378 (572)
T KOG2466|consen 354 AQLGTNISANSVAAGNDLSALLPKY 378 (572)
T ss_pred HHHhcchhccccccchhhHhhCcce
Confidence 5543 33344455555555555443
No 95
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=93.34 E-value=9.2 Score=37.91 Aligned_cols=327 Identities=15% Similarity=0.123 Sum_probs=154.1
Q ss_pred cccCCChHHHHHHHHHhhhhccc-cccHHHHHHhhChhHHHHHHHHHHHHHHHHHH---HHHHhhhhcCCCccC--CHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLW---QMVEMHEMVPGKRFD--RYHE 108 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~---~l~~~~~~~~~~~~~--sy~~ 108 (451)
++++..|.+|+.+.-+.+.+|+| +-....|.+-.| +.++.++.+.+++-.-|.. .|....+++++++.. .=.-
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GG-PGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~y 136 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGG-PGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAY 136 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCC-CccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHH
Confidence 45678899999999999999999 666888887655 4477777776666544432 222222222212110 1122
Q ss_pred HHHHHhcccccchhhHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhH
Q 013039 109 LGQHAFGEKLGLYIVVPQQLIVEVG--VCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAI 186 (451)
Q Consensus 109 ~~~~~~G~~~g~~~~~~~~~~~~~g--~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 186 (451)
+-++-+|.||-..++. ...+..+| ........+++.++.-++ ++ ....-+.+.++.-+.....+|++
T Consensus 137 Yi~kGl~~r~l~v~FA-~~li~afg~i~n~vQ~NsIa~a~~~af~---------~~-~~~~gi~la~l~~~VI~GGi~rI 205 (452)
T COG1115 137 YIEKGLGMRWLAVLFA-FALIAAFGFIGNGVQSNSIASALANAFG---------IP-PLVTGIVLALLVALVIFGGIKRI 205 (452)
T ss_pred HHHhhcCCcHHHHHHH-HHHHHHHHhhcchhhHHHHHHHHHHhcC---------Cc-HHHHHHHHHHHHHHHHHcchHHH
Confidence 4555566444323333 22223333 444444455555444332 22 23333334444455567789999
Q ss_pred HHHHHHHHHHHH-HHHHHHhhhe-eeeccCCCc-----cccccccCcccchh------hHHHHhhhHhhhccc-ceeecc
Q 013039 187 AGVSLAAAVMSL-SYSTIAWSAS-VRKGVQPDV-----AYGYKAKTAAGTVF------NFFSALGDVAFAYAG-HNVVLE 252 (451)
Q Consensus 187 ~~~s~~~~~~~v-~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~------~~~~~~~~~~faf~~-h~~~~~ 252 (451)
..++..-+-++. .+++..++.. ...+..|+. +..+.......+.. -+...+.=-+||=.. ..+.|.
T Consensus 206 a~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~ 285 (452)
T COG1115 206 AKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPI 285 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchh
Confidence 888877666433 3333222222 222222211 01111010011111 123333334555543 566666
Q ss_pred cccccccCCCCCCCCCCchHHHHHHHH-----HHHHHHHHHhhhhhhccCcchh------HHhhCCCChhHHHHHHHHHH
Q 013039 253 IQATIPSTPEKPSKGPMWRGVVVAYIV-----VALCYFPVALIGYWMFGNKVED------NILLSLEKPTWLIVMANFFV 321 (451)
Q Consensus 253 i~~~m~~~~~~p~~~~~~~~~~~~~~~-----~~~~Y~~~~~~gy~~fg~~~~~------~il~~~~~~~~~~~~~~~~~ 321 (451)
....-+ .+||.|.- .+-..+..+ |+..-+.+=+.|-+..++..++ ..-..++ ++...++.+.+
T Consensus 286 aaAaA~--~~hPv~QG--lv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g--~~G~~fv~i~l 359 (452)
T COG1115 286 AAAAAK--TDHPVKQG--LVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLG--SWGSYFVAIAL 359 (452)
T ss_pred HHHhhc--CCCcHHHh--HHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcC--ccHHHHHHHHH
Confidence 655542 26776654 332333333 3333333333343333332121 2222233 35555555555
Q ss_pred HHHHHhhhccccccHHHHHHHHhhhccCCCchhHHHHHHHHHHHHHHHHHHHh-ccchhhhhhhhh
Q 013039 322 VVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGIT-FPFFGGLLGFFG 386 (451)
Q Consensus 322 ~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-v~~~~~i~~~~G 386 (451)
.+-..++..-..+=..++++-+..+ +....+.|.+.+....+-+.. .+....+-++..
T Consensus 360 ~lFafTTIlg~yyyge~~~~fl~~~-------k~~~~~~r~~~l~~v~~Ga~~~l~~vW~laD~~~ 418 (452)
T COG1115 360 FLFAFTTILGWYYYGEKNIEFLFGS-------KKAILLYRLIVLAMVFLGAVLSLDLVWNLADLFM 418 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-------chHHHHHHHHHHHHHHHhccccHHHHHHHHHHhc
Confidence 5555555555555455555544421 134455666666555555532 233444444433
No 96
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=93.08 E-value=12 Score=38.61 Aligned_cols=107 Identities=12% Similarity=0.185 Sum_probs=52.1
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHHHHHHhhheee-eccCCCccccccccCc-ccchhhHHHHhhhHhhhccc-ceeecc
Q 013039 176 VLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVR-KGVQPDVAYGYKAKTA-AGTVFNFFSALGDVAFAYAG-HNVVLE 252 (451)
Q Consensus 176 pl~~~~~l~~l~~~s~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~-h~~~~~ 252 (451)
-++..|.+++..++.......-...++++.+++.. .|..++.++-+.+... -.+..-...+++-.+|+.+. ......
T Consensus 192 ~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it 271 (523)
T PF00209_consen 192 FFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMIT 271 (523)
T ss_dssp TTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHH
T ss_pred HHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceEEE
Confidence 34557888888888776665333333333333332 2222222222211111 11223347799999999886 455555
Q ss_pred cccccccCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013039 253 IQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVA 288 (451)
Q Consensus 253 i~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~ 288 (451)
+...+ |++++..+........-+.+-++.|
T Consensus 272 ~~Sy~------~~~~n~~~~a~~v~~~~~~~sllag 301 (523)
T PF00209_consen 272 YGSYN------KFKNNIFRDALIVAFINTLVSLLAG 301 (523)
T ss_dssp HHTTS-------TTS-SHHHHHHHHHHHHHHHHTTG
T ss_pred EcCcC------CCCccccccceEEEcCchhhhHhHH
Confidence 55544 3333455665555555555554444
No 97
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=91.83 E-value=2 Score=41.94 Aligned_cols=131 Identities=14% Similarity=0.230 Sum_probs=85.4
Q ss_pred HhhhhccccccHH---HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhh-cC--CCccCCHHHHHHHHhcccccchhh
Q 013039 50 VTAMVGAGVLSLP---YAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM-VP--GKRFDRYHELGQHAFGEKLGLYIV 123 (451)
Q Consensus 50 ~~~~iG~GiL~lP---~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~-~~--~~~~~sy~~~~~~~~G~~~g~~~~ 123 (451)
+|+.=.-|.-.=. .....+|++.++.+-.+-..+.+.. ..+++ .+ +++..=..+..+..||+ .|+++.
T Consensus 208 v~alk~~g~~~~~~~~~~~~~aglIa~i~La~iY~~L~ylG-----a~s~~~~~~~~nG~~IL~~~s~~~fG~-~G~~lL 281 (431)
T COG1114 208 VNALKSKGVTTKKQIIKYTIKAGLIAAILLALIYLSLFYLG-----ATSASAAGLAANGGQILSAYSQHLFGS-YGSILL 281 (431)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cchHhhcccccchHHHHHHHHHHHhch-hhHHHH
Confidence 3444444554433 3334457776665544433333333 11111 11 11223477889999996 899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 013039 124 VPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAV 195 (451)
Q Consensus 124 ~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 195 (451)
..+..+.|+-++++.....+|++++.++ +.++..|..++.++-+.++.. +++++-..|.--+.
T Consensus 282 ~~iv~lACLTTaiGLi~a~aefF~~~~p--------~~SY~~~v~if~i~sflvan~-GL~~Ii~isvPvL~ 344 (431)
T COG1114 282 GLIVFLACLTTAVGLIVACAEFFSKLVP--------KLSYKTWVIIFTLISFLVANL-GLEQIIKISVPVLT 344 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 9999999999999999999999999987 456788888888877766655 56666666654443
No 98
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=91.02 E-value=2.8 Score=43.11 Aligned_cols=240 Identities=13% Similarity=0.090 Sum_probs=113.2
Q ss_pred cccCCChHHHHHHHHHhhhhccc-cccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCCccCCHHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHE-MVPGKRFDRYHELGQH 112 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~-~~~~~~~~sy~~~~~~ 112 (451)
...|+..++.-.+.++.+.+|++ ++++|.-..+.|.-. .......++ ....+..... ..-..+..+-+|..++
T Consensus 42 l~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~--~~~~~~~l~---~~~~~~~~f~Pvf~~~~v~~~~eYl~~ 116 (585)
T KOG2349|consen 42 LGGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQY--WFFEWNALL---SVLLLGWIFIPVFYRLGVTTMYEYLEK 116 (585)
T ss_pred hcCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHH--HHHHHHHHH---HHHhhheEEEEEEEecCeeehhHHHHH
Confidence 44578888888899998988886 889998877777442 221111111 1111111110 0112224577888888
Q ss_pred HhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 013039 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192 (451)
Q Consensus 113 ~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 192 (451)
-||++ .|.+..+...+..+.-...++..=+-.+.+.. +++......+..+++.--...-.++..-+.-.+
T Consensus 117 Rf~~~-~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvt---------g~~~~l~~~~~~~ic~~YT~~GGlkaVi~TDv~ 186 (585)
T KOG2349|consen 117 RFGGR-VRYLATLSFILMIFLYLPVDMYAPALAINQVT---------GINLYLIVVILGLICVFYTALGGLKAVIWTDVV 186 (585)
T ss_pred Hhccc-chhhHHHHHHHHHHhheeeeEeehHHHHHHHh---------ccCceeehHHHHHHHHHHHHhcCeeEEEEhhHH
Confidence 88865 54655555544444322222222222222221 122222222222233323334455555555555
Q ss_pred HHHHHHHHHHHHhhheee-eccC--------CC-----c-cccccccCcccchhhHHHHhhhHhhhcccceeeccccccc
Q 013039 193 AAVMSLSYSTIAWSASVR-KGVQ--------PD-----V-AYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATI 257 (451)
Q Consensus 193 ~~~~~v~~~~~~~~~~~~-~~~~--------~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m 257 (451)
-...++.....+.+.... .|.. ++ . +...++.....-|.-++.....-.-.|+.+++...=+-.+
T Consensus 187 Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~lsl 266 (585)
T KOG2349|consen 187 QTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQRYLSL 266 (585)
T ss_pred HHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHhHHhcc
Confidence 555444433333333221 1111 11 1 1122222223344544455555555677788887766666
Q ss_pred ccCCCCCCCCCCchHHHHHHHHHHHHHHH---HHhhhhhhc
Q 013039 258 PSTPEKPSKGPMWRGVVVAYIVVALCYFP---VALIGYWMF 295 (451)
Q Consensus 258 ~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~---~~~~gy~~f 295 (451)
|+- ++.++.........++.... .|+..|..|
T Consensus 267 ----~sl--k~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y 301 (585)
T KOG2349|consen 267 ----PSL--KHAKPSLLLFGYGVLLIMFIMVFVGMIIYALY 301 (585)
T ss_pred ----ccH--HHhhhhhhhhhhHHHHHHHhhcccceeEeeec
Confidence 223 22336655444444444444 455555444
No 99
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=90.99 E-value=20 Score=36.52 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=81.7
Q ss_pred ccCCChHHHHHHHHHhhhhccccccHH----HH-HHh--hCh--------hHHHHHHHHHHHHHHHHHHHHHHhh---hh
Q 013039 36 SSRNAKWWYSAFHNVTAMVGAGVLSLP----YA-MAQ--LGW--------GPGVAILILSWIITLYTLWQMVEMH---EM 97 (451)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP----~a-~~~--~G~--------~~gii~~i~~~~~~~~s~~~l~~~~---~~ 97 (451)
++++.|.++-...++.+-+|+|++.-. .. +.+ .|. -.+.....+=+.+..|+...+.-.. ..
T Consensus 71 ~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~ 150 (485)
T PF02028_consen 71 AKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFF 150 (485)
T ss_dssp S--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheee
Confidence 455678888999999999999988643 21 221 111 1122222333333344443333321 11
Q ss_pred cCCCccCC-----HHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHH
Q 013039 98 VPGKRFDR-----YHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAS 172 (451)
Q Consensus 98 ~~~~~~~s-----y~~~~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 172 (451)
+.+++..+ |+-++++.-|+ .| .++|++..+...+....-+-.....+..-++...+-+.. ...+..+++...
T Consensus 151 y~k~~~~~~ss~l~pl~g~~~~g~-~g-~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~-~~~~~~ii~~~~ 227 (485)
T PF02028_consen 151 YNKGKPLRISSALYPLLGDRINGP-LG-KIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNT-FGLQIIIIIVIT 227 (485)
T ss_dssp HTS---SSGGGGCHHHHHHHHHSH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSST-HHHHHHHHHHHH
T ss_pred eecCCCCchhhhhhhhcCCcccCc-ch-hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCc-hHHHHHHHHHHH
Confidence 11222223 44444444443 55 667777766666666556666666666666655543221 111222223333
Q ss_pred HHHHHhcCCCchh-HHHHHHHHHHHHHHHHHH
Q 013039 173 VHFVLSHLPNFNA-IAGVSLAAAVMSLSYSTI 203 (451)
Q Consensus 173 i~~pl~~~~~l~~-l~~~s~~~~~~~v~~~~~ 203 (451)
+++-.+....+++ .+++|.+.+.+.+..++.
T Consensus 228 ~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~ 259 (485)
T PF02028_consen 228 VIFTISAVSGLDKGIKRLSNINVYLAFALLLF 259 (485)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667744 777887777765544433
No 100
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=87.28 E-value=4.1 Score=40.62 Aligned_cols=80 Identities=15% Similarity=0.276 Sum_probs=61.3
Q ss_pred CHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCch
Q 013039 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFN 184 (451)
Q Consensus 105 sy~~~~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~ 184 (451)
=.....++.+|+ +|+.+..+..++.++.++++-....++.+++..+ .+++.|..+..++.++++.. .++
T Consensus 266 il~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~---------isY~~~v~i~~l~S~~lSn~-G~~ 334 (439)
T PRK15433 266 ILHAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP---------LSYRTLVFILGGFSMVVSNL-GLS 334 (439)
T ss_pred HHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------CcHHHHHHHHHHHHHHHHHh-HHH
Confidence 355678889997 7889999999999999999999999999888753 35677777777777877765 555
Q ss_pred hHHHHHHHHHH
Q 013039 185 AIAGVSLAAAV 195 (451)
Q Consensus 185 ~l~~~s~~~~~ 195 (451)
++-..+.--+.
T Consensus 335 ~II~~s~PiL~ 345 (439)
T PRK15433 335 QLIQISVPVLT 345 (439)
T ss_pred HHHHHHHHHHH
Confidence 55555544333
No 101
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=83.84 E-value=43 Score=34.18 Aligned_cols=118 Identities=16% Similarity=0.091 Sum_probs=70.5
Q ss_pred ccCCChHHHHHHHHHhhhhccccccHH----HHH-Hhh--Chh--------HHHHHHHHHHHHHHHHHHHHHHhhhhc--
Q 013039 36 SSRNAKWWYSAFHNVTAMVGAGVLSLP----YAM-AQL--GWG--------PGVAILILSWIITLYTLWQMVEMHEMV-- 98 (451)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP----~a~-~~~--G~~--------~gii~~i~~~~~~~~s~~~l~~~~~~~-- 98 (451)
++.+-+...-++.++.+-+|+|++.-+ ... .+- |-. .+.....+-+.+..++...+...+..+
T Consensus 84 ~~PEfs~~SW~aMLFaAGmGigl~fwgvaEp~~~y~~pp~~~~~~t~~A~~~Al~~tffHWG~~~WaiY~lvalalaYf~ 163 (537)
T COG1292 84 EKPEFSTLSWLAMLFAAGMGIGLLFWGVAEPVYYYATPPPGAEPNTTEAAEQALAYTFFHWGLHAWAIYALVALALAYFH 163 (537)
T ss_pred CCCCcchhHHHHHHHHcccCceeeEeechhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHhheee
Confidence 445567788889999999999988753 221 111 221 344455556666666666666544321
Q ss_pred -CCCccCC-----HHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhc
Q 013039 99 -PGKRFDR-----YHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCK 155 (451)
Q Consensus 99 -~~~~~~s-----y~~~~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~ 155 (451)
+..+... |+-++++.-|+ +| ..++++-++...+....-+-+....+..-.+...+
T Consensus 164 ~rk~~pl~lss~l~Pllg~~~~G~-~G-~~IDi~aiiaTl~GiATsLG~ga~qi~~Gl~~l~g 224 (537)
T COG1292 164 YRKGLPLLLSSALYPLLGERIKGP-IG-HAVDILAIIATLFGIATSLGLGALQLTAGLSYLFG 224 (537)
T ss_pred EecCCCchhhhhhhhhhcccccCc-cc-hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 1111112 45555564464 77 77888887777766666666666666666666554
No 102
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=82.19 E-value=55 Score=32.37 Aligned_cols=132 Identities=11% Similarity=0.022 Sum_probs=59.9
Q ss_pred HHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhcccccchhhHHHH
Q 013039 48 HNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQ 127 (451)
Q Consensus 48 ~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G~~~g~~~~~~~~ 127 (451)
.+..+-+|.|-++- +.-.-+.+....++.++.+.+. +..+-+.+.|..-...++..|.+++.+++ ++++...+..
T Consensus 12 lva~a~idPG~i~t-~~~aGa~fGy~LLW~llls~~~---~~~~Q~~aaRlg~vTg~~l~~~~r~~~~~-~~~~~~~~~~ 86 (390)
T TIGR01197 12 LMSIAYIDPGNYST-DLQAGAAAGYKLLWVLLLSNIM---ALLLQRLCARLGVVTGLDLAEVCREHYPK-VPRITLWILA 86 (390)
T ss_pred HHHHHhcCchHHHH-HHHHHHHhCHHHHHHHHHHHHH---HHHHHHHHHHheeecCCCHHHHHHHHCCC-chHHHHHHHH
Confidence 33445566666552 1111112233444444444333 33333333332222234899999999996 4545444444
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHH--HHHHHHHHhcCCCchhHHHHHHHH
Q 013039 128 LIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMI--FASVHFVLSHLPNFNAIAGVSLAA 193 (451)
Q Consensus 128 ~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i--~~~i~~pl~~~~~l~~l~~~s~~~ 193 (451)
.....+....-..-.+.-++.+++ ++......+ ...+.+.+...++.+.+.++-..-
T Consensus 87 ~l~ii~~~~~e~~G~a~al~ll~g---------~p~~~~v~~~~~~~~~~~~~~~~~yr~~E~~~~~l 145 (390)
T TIGR01197 87 ELAIIATDMAEVIGTAIALNLLSH---------IPLWGGVLITIVDVFLFLFLDKPGLRILEAFVALL 145 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC---------CcHHHHHHHHHHHHHHHHHHHhCCceeHHHHHHHH
Confidence 443444444443333333333321 222222222 223333444456777777664333
No 103
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=79.80 E-value=62 Score=31.48 Aligned_cols=137 Identities=16% Similarity=0.188 Sum_probs=81.0
Q ss_pred cCCChHHHHHHHHHhhhhccc-cccHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHH----hhhhcCCCccCCHHHHH
Q 013039 37 SRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIIT-LYTLWQMVE----MHEMVPGKRFDRYHELG 110 (451)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~~i~~~~~~-~~s~~~l~~----~~~~~~~~~~~sy~~~~ 110 (451)
.|+.+-+-..+....+=+|+. .++=|.+..+-| +|++++..+-+-+ +.+.-.+.+ .+++++. .+..|+-
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~G--lgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nA---ltI~D~l 112 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYG--LGWVLLAMIQVPTVWLALGVLGKKFAILAREYNA---LTINDLL 112 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhc--hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCC---eeHHHHH
Confidence 456666666666666666553 444577766666 4454444433322 334444443 3343433 3788887
Q ss_pred HHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHH
Q 013039 111 QHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIA 187 (451)
Q Consensus 111 ~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~ 187 (451)
++-+-.+.-.++..+.+.+...+...+..+-.++.++.... .++..-.++++..+..-...-..+...
T Consensus 113 ~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~g---------idY~tgL~ifa~~V~iYt~fGGFRAvv 180 (473)
T COG4145 113 FARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALG---------IDYTTGLLIFAVSVAIYTAFGGFRAVV 180 (473)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHC---------CCchhhHHHHHHHHHHHHhhcceeeee
Confidence 77765445557788888888888888888888888877653 444555566665554444444444443
No 104
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=77.14 E-value=1e+02 Score=32.54 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhhhhccc-cccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHH
Q 013039 41 KWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQM 91 (451)
Q Consensus 41 s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l 91 (451)
+..+-.+..++-.+|-| +.=.|+...+-|...-.+-.+++.++...-+..|
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~L 90 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFL 90 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHH
Confidence 67889999999999999 4559998777765444444555444444444333
No 105
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=68.11 E-value=1.3e+02 Score=29.93 Aligned_cols=147 Identities=16% Similarity=0.173 Sum_probs=83.3
Q ss_pred CCCCCCCchHHH-HHHHHHHHHHHHHHhhhhhhccCcchhHHhhCCCChhHHHHHHHHHHH--HHHHhhhccccccHHHH
Q 013039 263 KPSKGPMWRGVV-VAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVV--VHVIGSYQIYAMPVFDM 339 (451)
Q Consensus 263 ~p~~~~~~~~~~-~~~~~~~~~Y~~~~~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~--i~~~~s~pl~~~~~~~~ 339 (451)
+--|++-++... .......+-.++....++..|+.--+...-+-..+.+-...+...... .+...++|...++.+..
T Consensus 217 ~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai 296 (415)
T COG0814 217 NYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAI 296 (415)
T ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 333433444243 444444444445566666666443222222222222223333333333 33347888888888866
Q ss_pred HHHHhhh----------ccCCCchhHHHHHHHHHHHHHHHHHHHhccc-hhhhhhhhhhhhhhhhHHHHHHHHHHHHhcC
Q 013039 340 IETLLVK----------KLNFSPTRLLRFVVRNLYVASTMFIGITFPF-FGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP 408 (451)
Q Consensus 340 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~-~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~ 408 (451)
..+.+.- ..++.+.+..|..........+.+.+...|. +....+.+|++..++.+-++|.+++.+-++.
T Consensus 297 ~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~ 376 (415)
T COG0814 297 ATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKL 376 (415)
T ss_pred HHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5553321 1112233444666666677777777777765 6777888898999999999999999987654
Q ss_pred C
Q 013039 409 R 409 (451)
Q Consensus 409 ~ 409 (451)
.
T Consensus 377 ~ 377 (415)
T COG0814 377 I 377 (415)
T ss_pred c
Confidence 3
No 106
>PRK09928 choline transport protein BetT; Provisional
Probab=65.30 E-value=2e+02 Score=30.76 Aligned_cols=162 Identities=14% Similarity=0.085 Sum_probs=83.8
Q ss_pred ccCCChHHHHHHHHHhhhhccccccH----HHH-HHh--hCh-------hHHHHHHHHHHHHHHHHHHHHHHhhh---hc
Q 013039 36 SSRNAKWWYSAFHNVTAMVGAGVLSL----PYA-MAQ--LGW-------GPGVAILILSWIITLYTLWQMVEMHE---MV 98 (451)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~l----P~a-~~~--~G~-------~~gii~~i~~~~~~~~s~~~l~~~~~---~~ 98 (451)
++.+.|.++-+..++.+-+|+|++.- |.. +.. .|- -.+...-.+=+.+..|+...+.-.+. .+
T Consensus 89 ~kPefS~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~y 168 (679)
T PRK09928 89 SKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSY 168 (679)
T ss_pred CCCCCCcchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 35667778889999999999998864 322 211 121 11333344445556666655555322 12
Q ss_pred CCCccCCHHHHHHHHhccc----ccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHH
Q 013039 99 PGKRFDRYHELGQHAFGEK----LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVH 174 (451)
Q Consensus 99 ~~~~~~sy~~~~~~~~G~~----~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 174 (451)
..+...+..+..+-.+|+| +| .++++...+...+....-+-+....+..-+....+-+.. ...+..+++...++
T Consensus 169 r~~~pl~issal~pllG~ri~G~~G-~~IDi~av~~tvfGiaTSLGlGv~qi~~GL~~lfGi~~~-~~~q~~ii~vi~~i 246 (679)
T PRK09928 169 RYNLPLTIRSALYPIFGKRINGPIG-HSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPES-LAAQAALIALSVII 246 (679)
T ss_pred cCCCCCchhHhhhhhcCCCCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-cHHHHHHHHHHHHH
Confidence 2222346666666666643 55 566666655555444444444445555555555432221 11222223333344
Q ss_pred HHHhcCCCc-hhHHHHHHHHHHHHHH
Q 013039 175 FVLSHLPNF-NAIAGVSLAAAVMSLS 199 (451)
Q Consensus 175 ~pl~~~~~l-~~l~~~s~~~~~~~v~ 199 (451)
+.++....+ |.++++|.+.+.+.+.
T Consensus 247 ~~~S~~sGl~KGIk~LS~lN~~La~~ 272 (679)
T PRK09928 247 ATISVTSGVNKGIRVLSELNVLLALG 272 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554444 4556666666665443
No 107
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=59.40 E-value=1.9e+02 Score=28.70 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhc---cCcc-hhHHhhCCCC---hhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHhh
Q 013039 273 VVVAYIVVALCYFPVALIGYWMF---GNKV-EDNILLSLEK---PTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLV 345 (451)
Q Consensus 273 ~~~~~~~~~~~Y~~~~~~gy~~f---g~~~-~~~il~~~~~---~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~ 345 (451)
-.++-+.-..+|...+-.|...- ++.. .+.++....+ ++....+..+.+.++++++-.-....+.|.+.+...
T Consensus 230 glIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p 309 (431)
T COG1114 230 GLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVP 309 (431)
T ss_pred HHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556666677877777773332 2222 2344444321 133455666667777777766666666666666654
Q ss_pred hccCCCchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHH
Q 013039 346 KKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLA 404 (451)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~ 404 (451)
+ -++..+ .++....++++|. -.++.++.+ ....+..+.|....+.
T Consensus 310 ~-----~SY~~~---v~if~i~sflvan--~GL~~Ii~i----svPvL~~iYPiaI~Lv 354 (431)
T COG1114 310 K-----LSYKTW---VIIFTLISFLVAN--LGLEQIIKI----SVPVLTAIYPIAIALV 354 (431)
T ss_pred c-----ccHHHH---HHHHHHHHHHHHH--hhHHHHHHH----HHHHHHHHhHHHHHHH
Confidence 1 122222 2223334444432 235555554 4577788888776554
No 108
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=58.56 E-value=34 Score=29.98 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=47.2
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHhcCC----------CcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 013039 380 GLLGFFGGFAFAPTTYFLPCIIWLAIYKPR----------KYSLSWCINWICIVLGLCLMILSPIGGLRQIIL 442 (451)
Q Consensus 380 ~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~----------~~~~~~~~~~~~~~~g~~~~v~g~~~si~~l~~ 442 (451)
...-+.|++.+.-+..++|+...+..++++ .+|...+...+...+|++..+++..-|..++.+
T Consensus 45 ~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 45 CEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred hhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344456778888888899999999998763 234455677778888888888888888777765
No 109
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=57.10 E-value=48 Score=26.39 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=14.5
Q ss_pred CChHHHHHHHHHhhhhccccccHHHH
Q 013039 39 NAKWWYSAFHNVTAMVGAGVLSLPYA 64 (451)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~lP~a 64 (451)
+..|..-++.+.=..+|+..+.+...
T Consensus 38 k~pwK~I~la~~Lli~G~~li~~g~l 63 (115)
T PF05915_consen 38 KIPWKSIALAVFLLIFGTVLIIIGLL 63 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555666666666543
No 110
>PRK09950 putative transporter; Provisional
Probab=51.45 E-value=2.9e+02 Score=28.41 Aligned_cols=162 Identities=17% Similarity=0.177 Sum_probs=89.1
Q ss_pred cCCChHHHHHHHHHhhhhccccccH----HHH-HHh--hCh--------hHHHHHHHHHHHHHHHHHHHHHHhhh----h
Q 013039 37 SRNAKWWYSAFHNVTAMVGAGVLSL----PYA-MAQ--LGW--------GPGVAILILSWIITLYTLWQMVEMHE----M 97 (451)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~l----P~a-~~~--~G~--------~~gii~~i~~~~~~~~s~~~l~~~~~----~ 97 (451)
+++.|.++-+..++.+-+|+|++.- |.. +.. .|. -.+...-.+=+.+..|+...+.-..- .
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~ 160 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFH 160 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4567778888999999999998864 322 211 121 11222333444455555555444321 1
Q ss_pred cCCCccCCHHHHHHHHhccc----ccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHH
Q 013039 98 VPGKRFDRYHELGQHAFGEK----LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASV 173 (451)
Q Consensus 98 ~~~~~~~sy~~~~~~~~G~~----~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i 173 (451)
+++++..+..+..+-.+|+| .| .++|+...+...+....-+-.....+..-+....+.+.. ......++....+
T Consensus 161 ~rk~~pl~iss~~~pllG~~~~g~~G-~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~-~~~~~~ii~vi~~ 238 (506)
T PRK09950 161 VRKNKGLSLSGIIAAITGVKPQGPWG-RLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPNN-FTVQAFVILLSGV 238 (506)
T ss_pred hhcCCCCchHHhhHhhcCCCCCCcch-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHH
Confidence 23333457888888888754 34 566776666666655555555556666666655543221 1122222333344
Q ss_pred HHHHhcCCCc-hhHHHHHHHHHHHHHHH
Q 013039 174 HFVLSHLPNF-NAIAGVSLAAAVMSLSY 200 (451)
Q Consensus 174 ~~pl~~~~~l-~~l~~~s~~~~~~~v~~ 200 (451)
++-++....+ |..+++|.+.+.+.+..
T Consensus 239 if~~S~~~Gl~kGIk~LS~~N~~la~~l 266 (506)
T PRK09950 239 IFCLSSYIGIDNGLQRLSKMVGWGAFLF 266 (506)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4555665565 56677777776655443
No 111
>PLN00151 potassium transporter; Provisional
Probab=51.25 E-value=3.6e+02 Score=29.45 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=20.2
Q ss_pred HHHhhhHhhhcccceeecccccccccCCCCCCCCCCchHHH
Q 013039 234 FSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274 (451)
Q Consensus 234 ~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~~~~ 274 (451)
+.++|-++.+..|-+. ++.+| .|=+++.++.+..
T Consensus 347 w~~LGgVvLciTGaEA---LfADL----GHFg~~sIqiaw~ 380 (852)
T PLN00151 347 WSALGGCVLCATGSEA---MFADL----GYFSVRSIQLAFT 380 (852)
T ss_pred EEEecceeeeeccchh---hhccc----CCCCccceeeeeh
Confidence 4456667777777665 45666 5555555555444
No 112
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=50.24 E-value=3.1e+02 Score=28.37 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=23.3
Q ss_pred HHHHhhhHhhhcccceeecccccccccCCCCCCCCCCchHHHH
Q 013039 233 FFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVV 275 (451)
Q Consensus 233 ~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~~~~~ 275 (451)
-+..+|..+.+..|-+.. |.+| .|=.|++++.+...
T Consensus 203 ~~~~LG~V~L~~TGaEAL---yADm----GHfg~~~Ir~aw~~ 238 (534)
T PF02705_consen 203 GFFVLGAVFLCVTGAEAL---YADM----GHFGRKPIRIAWFF 238 (534)
T ss_pred hhhhcchHHHHHhhHHHH---Hhhh----ccccchhhhhhHHH
Confidence 466777777788887754 5677 66666655555443
No 113
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=43.32 E-value=3.9e+02 Score=27.58 Aligned_cols=46 Identities=11% Similarity=0.087 Sum_probs=37.8
Q ss_pred CHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 013039 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHE 151 (451)
Q Consensus 105 sy~~~~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~ 151 (451)
...++-..+.|+|.. .....+..+..+..+++-.+..+.....+.+
T Consensus 326 p~~~i~~~~lg~k~~-v~~~~l~ii~~f~~gi~s~~a~SR~v~afaR 371 (550)
T KOG1289|consen 326 PIVQIYYQALGKKGA-VFLLSLIIIALFFMGISSLTASSRLVYAFAR 371 (550)
T ss_pred hHHHHHHHhcCCCce-EehhHHHHHHHHHhhHHHHHHHHHHHhhhhc
Confidence 677888889998766 8888888888888888888888887777665
No 114
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=39.90 E-value=1.7e+02 Score=29.96 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=38.9
Q ss_pred HHHHHhhhhHHHHHHHhhcC---CCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHH
Q 013039 137 VYMVTGGKSLHKVHELLCKE---PCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYST 202 (451)
Q Consensus 137 ~y~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~v~~~~ 202 (451)
.+.+...|............ +...+.|..|.++...+..-+....+++.++.++.++-+-....++
T Consensus 404 ~f~vTs~DS~~~~la~~s~~~~~ep~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~lP~~~v~~ 472 (485)
T PF02028_consen 404 IFFVTSADSATYVLAMLSSKGDEEPPRWLRIFWGLIIGALAIVLLLIGGLDALQSASIIGGLPFSFVML 472 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTSSS-HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666555554432 2233466677777666655555557788888888777664443333
No 115
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=39.02 E-value=3.9e+02 Score=27.66 Aligned_cols=17 Identities=24% Similarity=0.036 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHhc
Q 013039 391 APTTYFLPCIIWLAIYK 407 (451)
Q Consensus 391 ~~~~~i~P~l~~l~~~~ 407 (451)
..+..++|+++..+.+-
T Consensus 127 ~~~l~~lp~~~~~~~~~ 143 (522)
T PRK09598 127 IVVLGVLPGYIIYKIPL 143 (522)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 34556899988766654
No 116
>PRK10263 DNA translocase FtsK; Provisional
Probab=38.36 E-value=6.4e+02 Score=29.37 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhc
Q 013039 273 VVVAYIVVALCYFPVALIGYWMF 295 (451)
Q Consensus 273 ~~~~~~~~~~~Y~~~~~~gy~~f 295 (451)
+...+.+.+.+|++++++.|..-
T Consensus 25 ~~gIlLlllAlfL~lALiSYsPs 47 (1355)
T PRK10263 25 ALLILIVLFAVWLMAALLSFNPS 47 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcc
Confidence 44556677788888898888764
No 117
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=33.23 E-value=1.7e+02 Score=29.60 Aligned_cols=181 Identities=13% Similarity=0.121 Sum_probs=90.3
Q ss_pred cCCHHHHHHHHh------cccccchhhHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHhhcCCCCCcchh-hHHHHHHHHH
Q 013039 103 FDRYHELGQHAF------GEKLGLYIVVPQQLIVEVGVCIVYMV-TGGKSLHKVHELLCKEPCKEIKLS-YFIMIFASVH 174 (451)
Q Consensus 103 ~~sy~~~~~~~~------G~~~g~~~~~~~~~~~~~g~~~~y~~-~~~~~l~~~~~~~~~~~~~~~~~~-~~~~i~~~i~ 174 (451)
..+=-|+....+ |.++|-+++.+...+.+++..++--. ..+.-+..++|.+. +++|- ....+...++
T Consensus 321 ~W~Pldil~~~l~~~y~~G~RAgvFfi~~~f~laql~~NISan~vaagnDl~~L~Pkyi-----nIrRG~~~~a~ia~a~ 395 (572)
T KOG2466|consen 321 YWSPLDILNQWLDTNYSAGARAGVFFIGFGFALAQLGTNISANSVAAGNDLSALLPKYI-----NIRRGALICAIIAWAI 395 (572)
T ss_pred ccCHHHHHHHHhccccccccchhhhHHHHHHHHHHHhcchhccccccchhhHhhCcceE-----EecccHHHHHHHHHHh
Confidence 334445555554 33577777777777777776665443 33444555555443 23332 2233335556
Q ss_pred HHHhcCC-CchhHHHHHHHHHHHHHHHHHHHh-hheeeeccCCCccccccccCcccch-hhHHHHhhhHhhhcccceeec
Q 013039 175 FVLSHLP-NFNAIAGVSLAAAVMSLSYSTIAW-SASVRKGVQPDVAYGYKAKTAAGTV-FNFFSALGDVAFAYAGHNVVL 251 (451)
Q Consensus 175 ~pl~~~~-~l~~l~~~s~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~faf~~h~~~~ 251 (451)
.|=-+.+ +=+.+...+..++++.=+.-+++. +..++++... .++-+...+...-. ..=.+-=.+..|-.++.+++|
T Consensus 396 ~PWnll~SSs~F~t~LssysvfLspiagViiaDyF~iRk~~~~-i~~~y~~~~g~yY~~~~G~NwRA~vA~vcG~~P~lp 474 (572)
T KOG2466|consen 396 CPWNLLSSSSKFLTALSSYSVFLSPIAGVIIADYFLIRKGYYK-ITHLYSLSKGSYYYFKKGINWRAFVAYVCGMAPNLP 474 (572)
T ss_pred CchHHhccccHHHHHHHHHHHHHhhccceEeehhheeecceee-eeeeeecCCCceeeeecCccHHHHHHHHhccccCCc
Confidence 6644443 445556666666664332221111 1122333221 11111100000000 001122244566678899999
Q ss_pred ccccccccCCCCCCCCC--CchHHHHHHHHHHHHHHHHHh
Q 013039 252 EIQATIPSTPEKPSKGP--MWRGVVVAYIVVALCYFPVAL 289 (451)
Q Consensus 252 ~i~~~m~~~~~~p~~~~--~~~~~~~~~~~~~~~Y~~~~~ 289 (451)
-+..|..++.|.|+-.- .......++.+.+..|..+..
T Consensus 475 G~a~~V~~~~~v~~G~~~~yy~~yf~sf~isf~vYwiLc~ 514 (572)
T KOG2466|consen 475 GFAGSVGADIKVPDGAVKLYYLDYFFSFLISFLVYWILCL 514 (572)
T ss_pred chhhhcCcccccccceEEEEechHHHHHHHHHHHHHHHHh
Confidence 99999955445554321 112456888888888887653
No 118
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=29.83 E-value=6.3e+02 Score=25.99 Aligned_cols=161 Identities=15% Similarity=0.077 Sum_probs=82.8
Q ss_pred cCCChHHHHHHHHHhhhhccccccH----HHHHHh---hCh--------hHHHHHHHHHHHHHHHHHHHHHHhh---hhc
Q 013039 37 SRNAKWWYSAFHNVTAMVGAGVLSL----PYAMAQ---LGW--------GPGVAILILSWIITLYTLWQMVEMH---EMV 98 (451)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~l----P~a~~~---~G~--------~~gii~~i~~~~~~~~s~~~l~~~~---~~~ 98 (451)
+++.+.++-+..++.+-+|+|++.- |....+ .|. -.+...-.+=+.+..|+...+.-.. ..+
T Consensus 83 kPefs~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~PP~g~e~~s~~A~~~A~~~~~fHWG~~aWaiY~~~~la~ay~~y 162 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFGYFFF 162 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhhhhhhhhhHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 5567778888999999999998874 422211 121 1122223333445555555544432 122
Q ss_pred CCCcc-CCHHHHHHHHhccc-----ccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHH
Q 013039 99 PGKRF-DRYHELGQHAFGEK-----LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAS 172 (451)
Q Consensus 99 ~~~~~-~sy~~~~~~~~G~~-----~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 172 (451)
..++. .+..+..+-.+|+| .| .++|+...+...+....-+-.....+..-++...+-+.. ...+..+++...
T Consensus 163 ~~~~p~l~iss~~~pllG~~~~~g~~G-~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~-~~~~~~ii~~i~ 240 (504)
T PRK03356 163 VRKMDVIRPSSTLVPLVGEKHAKGLFG-TIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHT-LQLDAIIITCWI 240 (504)
T ss_pred hcCCCcccHHHHHHHHcCCCcccCchH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHH
Confidence 23333 26788888888843 34 566666665555555555555555555555555543221 222222223333
Q ss_pred HHHHHhcCCCc-hhHHHHHHHHHHHHHH
Q 013039 173 VHFVLSHLPNF-NAIAGVSLAAAVMSLS 199 (451)
Q Consensus 173 i~~pl~~~~~l-~~l~~~s~~~~~~~v~ 199 (451)
+++-++....+ |.++++|.+.+.+.+.
T Consensus 241 ~if~~S~~~Gl~kGIk~LS~~N~~la~~ 268 (504)
T PRK03356 241 ILNAICVACGLQKGVRIASDVRSYLSFL 268 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443 4455566555554443
No 119
>TIGR00909 2A0306 amino acid transporter.
Probab=28.87 E-value=5.8e+02 Score=25.23 Aligned_cols=46 Identities=11% Similarity=0.093 Sum_probs=36.3
Q ss_pred CHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 013039 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHE 151 (451)
Q Consensus 105 sy~~~~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~ 151 (451)
...+..++..|+ ++..++.+...+..+++..+.....+..+..+.+
T Consensus 265 ~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~ 310 (429)
T TIGR00909 265 PLSLVGYDLGQG-IGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSR 310 (429)
T ss_pred HHHHHHHHhCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777777776 4547888888999999999988888888887764
No 120
>PLN00148 potassium transporter; Provisional
Probab=28.63 E-value=3.7e+02 Score=29.22 Aligned_cols=177 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCCCCCCCCCch---HHHHHHHHHHHHHHHHHhhhhhhccCcchhHHhhCCCChhHHHHHHHHHHHHHHHhhhccccccH
Q 013039 260 TPEKPSKGPMWR---GVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPV 336 (451)
Q Consensus 260 ~~~~p~~~~~~~---~~~~~~~~~~~~Y~~~~~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~ 336 (451)
+.+++++..++. .+..++....++|--+|.....+|.+.-.+..-....+.+.+-.+.-++..+.++.+.=..+..+
T Consensus 9 ~~~~~~~~~w~~~~~~l~La~~alGVVyGDIGTSPLYv~~~~F~~~~~~~~~~~~ilGvLSLIfWtLtLiv~iKYV~ivl 88 (785)
T PLN00148 9 PSRNPSQLSWVNLSRNLLLAYQSFGVVYGDLSTSPLYVYKSTFSGKLQKHQNEETIFGAFSLIFWTFTLIPLLKYVTILL 88 (785)
T ss_pred CCCCCCcchhhHHhHHHHHHHhcccEEeCcccccHHHHHHHHhcCCCCCCCCHHHHHhHHHHHHHHHHHHHHHhheEEEE
Q ss_pred HH---------HHHHHhhhccCCCc-----------------------------------hhHHHHHHHHHHHHHHHHHH
Q 013039 337 FD---------MIETLLVKKLNFSP-----------------------------------TRLLRFVVRNLYVASTMFIG 372 (451)
Q Consensus 337 ~~---------~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~la 372 (451)
|. .+..++.+..+... ++.++.+....++..+++++
T Consensus 89 rAdn~GEGG~fALysLl~r~~~~~~~pn~~~~d~~ls~~~~~~~~~~~~~~~~k~~lE~~~~~~~~ll~l~l~G~am~~g 168 (785)
T PLN00148 89 SADDNGEGGTFALYSLLCRHAKLSLLPNQQAADEELSAYKYGPSTQTVGSSPLKRFLEKHKRLRTALLLVVLFGACMVIG 168 (785)
T ss_pred EecCCCCchHHHHHHHHHHhcccccCccchhhhhhhhhhccCccccchhhhHHHHHhhhchHHHHHHHHHHHHHHHHHHh
Q ss_pred --Hhccchhhhhhhhh----------hhhhhhhHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHHHH
Q 013039 373 --ITFPFFGGLLGFFG----------GFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLR 438 (451)
Q Consensus 373 --~~v~~~~~i~~~~G----------~~~~~~~~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~ 438 (451)
...|.++.+=.+-| .....+.+.++=.+|.++.+... +..+.+..+++++-+++.++|.|+-+.
T Consensus 169 DgvlTPAISVLSAVeGl~v~~p~~~~~~vv~is~~ILv~LF~vQ~~GT~--kVg~~FgPIm~lWf~~i~~iGiyni~~ 244 (785)
T PLN00148 169 DGVLTPAISVLSSVSGLQVTETKLTDGELVLLACVILVGLFALQHCGTH--RVAFMFAPIVIIWLLSIGSIGLYNIIH 244 (785)
T ss_pred ccccchhHHHHHHhccceecCCCCCCCeehhHHHHHHHHHHHHhccccH--HHHhhhhhHHHHHHHHHHHHHHHHHHh
No 121
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=28.35 E-value=6.4e+02 Score=25.56 Aligned_cols=161 Identities=15% Similarity=0.144 Sum_probs=79.3
Q ss_pred cCCChHHHHHHHHHhhhhccccccH----HHH-HHh--hChh---------HHHHHHHHHHHHHHHHHHHHHHhhh---h
Q 013039 37 SRNAKWWYSAFHNVTAMVGAGVLSL----PYA-MAQ--LGWG---------PGVAILILSWIITLYTLWQMVEMHE---M 97 (451)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~l----P~a-~~~--~G~~---------~gii~~i~~~~~~~~s~~~l~~~~~---~ 97 (451)
+.+.|.++-+..++.+-+|+|++.- |.. +.+ .|.- .+.....+=+.+..|+...+.-..- .
T Consensus 34 kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~~~~s~~~A~~~A~~~~~fHWG~~aWaiY~l~ala~aY~~ 113 (453)
T TIGR00842 34 KPEFSTLSWLAMLFAAGMGIGLMFWGVAEPLTYYLTPPFGAGPTSTTQAQEQALAYTLFHWGIHAWAIYALVGLALAYFH 113 (453)
T ss_pred CCCCcchHHHHHHHHHhhhhhhhhhHhhhHHHHhCCCCCCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhh
Confidence 4556777888899999999998864 322 211 1211 1222233334455555555544321 2
Q ss_pred cCCCccCCHHHHHHHHhccc----ccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHH
Q 013039 98 VPGKRFDRYHELGQHAFGEK----LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASV 173 (451)
Q Consensus 98 ~~~~~~~sy~~~~~~~~G~~----~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i 173 (451)
+++++..+..+..+-.+|+| .| .++|+...+...+....-+-.....+..-+....+-+.. ......++....+
T Consensus 114 ~rk~~~~~iss~~~pllG~~~~g~~g-~~ID~l~v~ati~G~atsLGlg~~qi~~gl~~l~gi~~~-~~~~~~ii~~i~~ 191 (453)
T TIGR00842 114 VRKGLPLRLSSALVPLLGERVNGPIG-KAIDIMALVATLFGVATSLGLGAPQINAGLSALFGIPDS-FWLQALIILCVTA 191 (453)
T ss_pred eecCCCCchhhhhhcccCCcccCccH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHH
Confidence 23333456778888778754 34 455655555555544444444555555555555432221 1112222222223
Q ss_pred HHHHhcCCCc-hhHHHHHHHHHHHHHH
Q 013039 174 HFVLSHLPNF-NAIAGVSLAAAVMSLS 199 (451)
Q Consensus 174 ~~pl~~~~~l-~~l~~~s~~~~~~~v~ 199 (451)
++-.+....+ |.++++|.+.+.+.+.
T Consensus 192 ~f~~S~~~Gl~kGIk~LS~~n~~l~~~ 218 (453)
T TIGR00842 192 LACISVASGVGKGIKILSNINMALAFL 218 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444343 4445555555554443
No 122
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=27.82 E-value=74 Score=20.56 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhccCc
Q 013039 271 RGVVVAYIVVALCYFPVALIGYWMFGNK 298 (451)
Q Consensus 271 ~~~~~~~~~~~~~Y~~~~~~gy~~fg~~ 298 (451)
.+..++..+..++..+.|..-|.+||..
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 4566667777777777777788888864
No 123
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=27.36 E-value=6.3e+02 Score=26.33 Aligned_cols=13 Identities=31% Similarity=0.158 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhc
Q 013039 395 YFLPCIIWLAIYK 407 (451)
Q Consensus 395 ~i~P~l~~l~~~~ 407 (451)
-++|+++..+.+-
T Consensus 131 gvlP~~~~~~~~i 143 (545)
T PRK11598 131 GVLPALIACWIKI 143 (545)
T ss_pred HHHHHHHHHhhhh
Confidence 4689887766554
No 124
>CHL00020 psbN photosystem II protein N
Probab=27.15 E-value=62 Score=20.58 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCc
Q 013039 272 GVVVAYIVVALCYFPVALIGYWMFGNK 298 (451)
Q Consensus 272 ~~~~~~~~~~~~Y~~~~~~gy~~fg~~ 298 (451)
+..++..+..++..+.|..-|.+||..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 445666666777777777778888864
No 125
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=25.58 E-value=5e+02 Score=23.86 Aligned_cols=37 Identities=11% Similarity=0.037 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHhhh
Q 013039 310 PTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVK 346 (451)
Q Consensus 310 ~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~ 346 (451)
.+....-.++...+.+..+.|...+=.-..+...+.+
T Consensus 75 ~E~f~~~ikls~~~g~~~a~P~i~yqiw~Fi~PgLy~ 111 (249)
T CHL00182 75 GEYFFSSIKISFYTGLLISSPFIIYQIILFILPGLTK 111 (249)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCH
Confidence 3566777899999999999999877555555555443
No 126
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=25.47 E-value=3e+02 Score=24.01 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhcc
Q 013039 396 FLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYK 448 (451)
Q Consensus 396 i~P~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~l~~~~~~~~ 448 (451)
++|.++-+..+++.+.+.-+...+...++|++-.++|......+..+-.+|.+
T Consensus 82 ~ip~~~G~~s~~rN~i~~l~~y~~~~~~~gl~pl~~g~~~~~~~~~~y~~~~~ 134 (186)
T PF07086_consen 82 LIPSLLGLLSLRRNNISLLRLYMIGSSLFGLLPLIYGAMYYFPEVQQYYRHGK 134 (186)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45666666666554443333334556666776666777666666666555543
No 127
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=24.95 E-value=78 Score=20.21 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCc
Q 013039 273 VVVAYIVVALCYFPVALIGYWMFGNK 298 (451)
Q Consensus 273 ~~~~~~~~~~~Y~~~~~~gy~~fg~~ 298 (451)
...+..+..++-.+.|..-|.+||..
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 34556666667777777788888853
No 128
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=24.81 E-value=6.4e+02 Score=24.36 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=28.0
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhhhccCcchhHHhhCC
Q 013039 269 MWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSL 307 (451)
Q Consensus 269 ~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~~~~il~~~ 307 (451)
-++++..+...+...-.++...||.......++++...+
T Consensus 46 T~~al~~tll~alp~pl~~~~~g~~L~~~~~~~~~~~~l 84 (340)
T PF12794_consen 46 TPRALLLTLLLALPLPLLLLAIGYLLQFAAWSSPFSVAL 84 (340)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHH
Confidence 556777888888888888888898877554555544444
No 129
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=24.47 E-value=4.2e+02 Score=22.14 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=11.2
Q ss_pred hhhhHHHHHHHHHHHHhc
Q 013039 390 FAPTTYFLPCIIWLAIYK 407 (451)
Q Consensus 390 ~~~~~~i~P~l~~l~~~~ 407 (451)
-..+.-++|+++..+.+-
T Consensus 71 ~~l~~~vlP~~~l~~~~i 88 (156)
T PF08019_consen 71 WLLLLGVLPALLLWRVRI 88 (156)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344555678888766554
No 130
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=23.55 E-value=1.3e+02 Score=27.26 Aligned_cols=22 Identities=36% Similarity=0.703 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhHH
Q 013039 414 SWCINWICIVLGLCLMILSPIG 435 (451)
Q Consensus 414 ~~~~~~~~~~~g~~~~v~g~~~ 435 (451)
.+++-|+++++|+++++-++++
T Consensus 222 q~wLwwi~~vlG~ll~lr~~i~ 243 (262)
T KOG4812|consen 222 QYWLWWIFLVLGLLLFLRGFIN 243 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHh
Confidence 3577888999999998888764
No 131
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=21.55 E-value=9.8e+02 Score=25.34 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=19.5
Q ss_pred HHhhhHhhhcccceeecccccccccCCCCCCCCCCchHHH
Q 013039 235 SALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274 (451)
Q Consensus 235 ~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~~~~ 274 (451)
..+|..+.+..|.+. +|.+| .|=.|++++.+..
T Consensus 216 ~~LG~V~L~vTGaEA---LYADm----GHFG~~~Ir~aW~ 248 (622)
T PRK10745 216 FALGAVVLAITGVEA---LYADM----GHFGKFPIRLAWF 248 (622)
T ss_pred EEecceeeeccchHH---Hhhcc----CCCCccceeeeeh
Confidence 345555555555553 57788 6666666655554
No 132
>PF04911 ATP-synt_J: ATP synthase j chain; InterPro: IPR006995 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit J found in the F0 complex of F-ATPases from fungal mitochondria. This subunit does not appear to display sequence similarity with subunits of F-ATPases found in other organisms []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o)
Probab=20.24 E-value=37 Score=22.76 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=29.3
Q ss_pred hhHHHHhhhHhhhcccceeecccccccccCCCCCCCCC
Q 013039 231 FNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGP 268 (451)
Q Consensus 231 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~ 268 (451)
..++.+-.++.|...-.++...=..|-+||||||...+
T Consensus 11 wPFf~ag~iv~ygv~k~~~a~~ns~E~~NDPRNP~~~~ 48 (54)
T PF04911_consen 11 WPFFAAGAIVYYGVNKAQNAMMNSDEFKNDPRNPRAAK 48 (54)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCHHHhcCCCChhhhc
Confidence 45677777777777777777777888889999997553
Done!