Query 013039
Match_columns 451
No_of_seqs 130 out of 1193
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 03:04:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.9 6.5E-20 2.2E-24 183.5 26.5 357 35-410 5-380 (445)
2 3gia_A Uncharacterized protein 99.8 7.9E-17 2.7E-21 161.1 26.4 347 36-409 4-369 (444)
3 4djk_A Probable glutamate/gamm 99.7 2.4E-14 8.3E-19 145.6 29.9 294 35-345 8-321 (511)
4 2jln_A MHP1; hydantoin, transp 98.8 2.2E-06 7.7E-11 86.1 28.3 292 37-345 24-331 (501)
5 3dh4_A Sodium/glucose cotransp 98.3 0.00043 1.5E-08 70.0 27.5 151 35-199 17-169 (530)
6 2xq2_A Sodium/glucose cotransp 98.0 0.0018 6.1E-08 66.4 25.2 149 36-198 47-197 (593)
7 2a65_A Leutaa, Na(+):neurotran 93.5 6.6 0.00023 39.0 36.3 32 40-71 9-41 (519)
8 4ain_A Glycine betaine transpo 88.2 22 0.00074 35.2 20.0 157 36-194 92-270 (539)
9 2wsw_A BCCT family betaine/car 57.8 95 0.0033 30.5 11.6 163 36-201 87-275 (509)
10 2l2t_A Receptor tyrosine-prote 21.0 1.3E+02 0.0046 18.4 3.7 11 380-390 12-22 (44)
11 4b4a_A TATC, SEC-independent p 20.1 4E+02 0.014 23.2 8.3 25 310-334 147-171 (249)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.86 E-value=6.5e-20 Score=183.52 Aligned_cols=357 Identities=15% Similarity=0.096 Sum_probs=228.3
Q ss_pred cccCCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHh
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~ 114 (451)
+++|+.+.++..+..+++++|+|++.+|....+.|.. +++..++.+++.......+.|...+.|..+ +..++.++.+
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~ 81 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPSPG--GSYAYARRCF 81 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCTT--THHHHHHHHS
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CchhhHHhHc
Confidence 3568899999999999999999999999888888864 777788889999999999999999888866 8899999999
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 013039 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (451)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 194 (451)
||++| ++..+..++........+....++++..+++... ..+....+.+++ ++..-....++.+...+++.+..
T Consensus 82 G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~in~~g~~~~~~~~~~~~ 155 (445)
T 3l1l_A 82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK----DPWVLTITCVVV-LWIFVLLNIVGPKMITRVQAVAT 155 (445)
T ss_dssp CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG----SHHHHHHHHHHH-HHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc----ccHHHHHHHHHH-HHHHHHHHHhchHHHHHHHHHHH
Confidence 99888 8888888887777777777777777665443211 001111111122 22222233457788877777666
Q ss_pred HHHHHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCCchHHH
Q 013039 195 VMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274 (451)
Q Consensus 195 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~~~~ 274 (451)
...+..++++++..+.....++....+.+. ...++.++..++...+|+|.|++.+....+|+ |||+|+ .+|++.
T Consensus 156 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r~-ip~a~~ 229 (445)
T 3l1l_A 156 VLALIPIVGIAVFGWFWFRGETYMAAWNVS-GLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKRN-VPIATI 229 (445)
T ss_dssp HHHHHHHHHHHHTTSTTCCCCCCCCC------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChhhcccccCcc-CCccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCcccc-ccHHHH
Confidence 655544443333333222222221122111 11235688999999999999999999999999 899776 899999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCcch----h---HHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHhhhc
Q 013039 275 VAYIVVALCYFPVALIGYWMFGNKVE----D---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK 347 (451)
Q Consensus 275 ~~~~~~~~~Y~~~~~~gy~~fg~~~~----~---~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~ 347 (451)
.+...+.++|++.........+.+.. + .+..... .++...+..+...++.+.+.....+...+.+....+++
T Consensus 230 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg 308 (445)
T 3l1l_A 230 GGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDG 308 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999998877666653221 1 1111111 13455566677777777776666666666665554432
Q ss_pred c--------CCCchhHHHHHHHHHHHHHHHHHHHhcc----chhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCC
Q 013039 348 L--------NFSPTRLLRFVVRNLYVASTMFIGITFP----FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRK 410 (451)
Q Consensus 348 ~--------~~~~~~~~~~~~~~~~~~~~~~la~~v~----~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~~ 410 (451)
. + +++.+.+.......+.....+....| .++.+.++.+ ....+.|.++.+.+++.+++++
T Consensus 309 ~lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 309 LFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp SSCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred CCcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence 1 2 22333333333322222222211122 3555555544 3456889999999998887654
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.77 E-value=7.9e-17 Score=161.06 Aligned_cols=347 Identities=12% Similarity=0.072 Sum_probs=221.2
Q ss_pred ccCCChHHHHHHHHHhhhhccccccHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHh
Q 013039 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPY-AMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (451)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~-a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~ 114 (451)
++|+.+.++..+..+++++|+|++..|. +....|. ..++.+++.+++.......+.|...+.|..+ ...+..++.+
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~G--g~y~~~~~~~ 80 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNA--GPIAFIHKAI 80 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTT--THHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--cHHHhHHHHh
Confidence 5788999999999999999999999875 4556665 5777788899999999999999999888865 8889999999
Q ss_pred cccc-cchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhH---HHHHHHHHHHHhcCCCchhHHHHH
Q 013039 115 GEKL-GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYF---IMIFASVHFVLSHLPNFNAIAGVS 190 (451)
Q Consensus 115 G~~~-g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~i~~~i~~pl~~~~~l~~l~~~s 190 (451)
|+++ + ....+..++........+....++++..+++.. ....+ ..+..++.+-....++.+...+++
T Consensus 81 G~~~~~-g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~ 151 (444)
T 3gia_A 81 GDNIIT-GALSILLWMSYVISIALFAKGFAGYFLPLINAP--------INTFNIAITEIGIVAFFTALNFFGSKAVGRAE 151 (444)
T ss_dssp CSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9863 3 233456666666666677777777776654321 11111 111112222223345777777777
Q ss_pred HHHHHHHHHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCCc
Q 013039 191 LAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMW 270 (451)
Q Consensus 191 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~ 270 (451)
.+.....+..++++++..+.....++.. +...+.++.++..++....|+|.|++.+....+|+ |||+|+ .+
T Consensus 152 ~~~~~~~i~~~~~~ii~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~----k~P~r~-ip 222 (444)
T 3gia_A 152 FFIVLVKLLILGLFIFAGLITIHPSYVI----PDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHI----ENPKKN-VP 222 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCGGGTS----CCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGB----SSHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChhhcC----CCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHc----cCcccc-hh
Confidence 6666654444333333333222222221 12234566789999999999999999999999999 899776 89
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhccCcch----hH----HhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHHH
Q 013039 271 RGVVVAYIVVALCYFPVALIGYWMFGNKVE----DN----ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIET 342 (451)
Q Consensus 271 ~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~~----~~----il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~ 342 (451)
|++..+...++++|.+..+......+.+.. ++ ...... +++...+..+...++.+.+.....+...+.+..
T Consensus 223 ~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a 301 (444)
T 3gia_A 223 RAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFL-GNLGFLLISIGALFSISSAMNATIYGGANVAYS 301 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988776555542210 11 111111 134445666666777777666666666666655
Q ss_pred Hhhhcc------CCCchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCC
Q 013039 343 LLVKKL------NFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR 409 (451)
Q Consensus 343 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~ 409 (451)
+.+++. +.+++.+.+..... ...+.++.. ..+++.+.++.+ .+..+.|.++.+.+++.+|++
T Consensus 302 ~a~dg~lP~~f~~~~~~~P~~a~~~~--~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~r~~~ 369 (444)
T 3gia_A 302 LAKDGELPEFFERKVWFKSTEGLYIT--SALGVLFAL-LFNMEGVASITS--AVFMVIYLFVILSHYILIDEV 369 (444)
T ss_dssp HHHHSSCCSSCCTTSCCSCTHHHHHH--HHHHHHHHH-HSCHHHHHHHHH--HHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHCCCCCHHHhCCCCCCCcHHHHHH--HHHHHHHHH-HcCHHHHHHHHH--HHHHHHHHHHHHHHHHhhhcC
Confidence 554322 11111222222221 112222222 235777777744 345688888888888877654
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.68 E-value=2.4e-14 Score=145.61 Aligned_cols=294 Identities=9% Similarity=0.033 Sum_probs=169.9
Q ss_pred cccCCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHhhh--hcCCCccCCHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITL-YTLWQMVEMHE--MVPGKRFDRYHELGQ 111 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~-~s~~~l~~~~~--~~~~~~~~sy~~~~~ 111 (451)
+.+|+.+.++.+...++.++| +..+|. ....|.. .++..++.+++.. ..+..+.|... +.| .+ .....++
T Consensus 8 ~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~G--G~y~~~~ 80 (511)
T 4djk_A 8 GKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EG--GVFAWVS 80 (511)
T ss_dssp ----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC------CHHHHHH
T ss_pred ccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CC--ChhhhHH
Confidence 457899999999999999985 677886 4556643 4444444444433 37888999988 888 76 8999999
Q ss_pred HHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHH--HHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHH
Q 013039 112 HAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVH--ELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGV 189 (451)
Q Consensus 112 ~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 189 (451)
+.+||++| ++..+..++.......++....++.+..++ +... ...+....+.+++.++ +-+...+..+...++
T Consensus 81 ~~~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~-~~~in~~g~~~~~~~ 155 (511)
T 4djk_A 81 NTLGPRWG-FAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALN---EDPITKTIAALIILWA-LALTQFGGTKYTARI 155 (511)
T ss_dssp HHHCHHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGT---SCSSHHHHHHHHHHHH-HHHHHHTCSSSHHHH
T ss_pred hhcCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc---cCcHHHHHHHHHHHHH-HHHHHHhChHHHHHH
Confidence 99999888 888888888777766666666666654432 1111 0112122222222222 222223456666666
Q ss_pred HHHHHHHH----HHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCC
Q 013039 190 SLAAAVMS----LSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (451)
Q Consensus 190 s~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~ 265 (451)
+.+..... +..+++........+...+.+.+.....+.....+...++...+|+|.|.+......+|+ |||+
T Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~----k~P~ 231 (511)
T 4djk_A 156 AKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEM----SNPG 231 (511)
T ss_dssp THHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSS----SCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhc----cCcc
Confidence 55543321 111111111111112111111111111111111234456788899999999999999999 9998
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhhhhhhccCcch---h-------HHhhCCC-ChhHHHHHHHHHHHHHHHhhhccccc
Q 013039 266 KGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE---D-------NILLSLE-KPTWLIVMANFFVVVHVIGSYQIYAM 334 (451)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~~---~-------~il~~~~-~~~~~~~~~~~~~~i~~~~s~pl~~~ 334 (451)
|. ++|++..++.+++++|++..+......+++.. + ....... ...+...+..+...++.+.+......
T Consensus 232 k~-ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (511)
T 4djk_A 232 RD-YPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIV 310 (511)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cc-hhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 89999999999999999998877766654321 1 1222332 02456667777777777776655555
Q ss_pred cHHHHHHHHhh
Q 013039 335 PVFDMIETLLV 345 (451)
Q Consensus 335 ~~~~~~~~~~~ 345 (451)
...+.+..+.+
T Consensus 311 ~~sR~l~a~ar 321 (511)
T 4djk_A 311 GPSRGMYVTAQ 321 (511)
T ss_dssp HHHHHTCHHHH
T ss_pred HHHHHHHHHcc
Confidence 55555544443
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.85 E-value=2.2e-06 Score=86.11 Aligned_cols=292 Identities=10% Similarity=0.045 Sum_probs=161.9
Q ss_pred cCCChHHHHHHHHHhhhhccccccHHHHHHh-hChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHhc
Q 013039 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQ-LGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (451)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~-~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~G 115 (451)
+|+.++++-...-++..++.+.+.+...+.. .++.-+++..++..++...-+.+......+. +. ++.++.|..||
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~-Gl---~~~v~~R~~FG 99 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRW-GI---NFTVAARMPFG 99 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-CC---CHHHHTTTTSC
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhc-CC---ChhhhhHhhcc
Confidence 4567889999999999888888877765544 2345555555555555444444444544433 22 79999999999
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcc-hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 013039 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIK-LSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (451)
Q Consensus 116 ~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 194 (451)
++ |..+..+...+..+|.........++.+..++....+ +. ...+.+++.++.+++.+ ...+.++++..+..
T Consensus 100 ~~-Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g-----~~~~~v~~~i~~~l~~~~~~-~G~~~i~~~~~~~~ 172 (501)
T 2jln_A 100 IR-GSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTG-----FTNLPLWIVIFGAIQVVTTF-YGITFIRWMNVFAS 172 (501)
T ss_dssp TT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----cchHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHH
Confidence 74 6688899999999998888888889998888765431 12 23445556666666664 46777777777666
Q ss_pred HHHHHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhH-hhhcccceeecccccccccCCCCCCC-------
Q 013039 195 VMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDV-AFAYAGHNVVLEIQATIPSTPEKPSK------- 266 (451)
Q Consensus 195 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~faf~~h~~~~~i~~~m~~~~~~p~~------- 266 (451)
...++..+.+.+..+.+...+ ...... .++......+..++... .+.-....+.+.+.+++ |+++.
T Consensus 173 p~~~i~~i~~~~~~l~~~g~~-~~~~~~-~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~----~~~~~~~~~~~~ 246 (501)
T 2jln_A 173 PVLLAMGVYMVYLMLDGADVS-LGEVMS-MGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKEC----KVDPNASREGQT 246 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC-HHHHTT-CCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTB----CCCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCc-chhhhc-cCCccchHHHHHHHHHHHHHHHHHHhccCcccccC----CCCccccccchh
Confidence 544433333333222221110 000000 01111223444444432 22223346678888888 44443
Q ss_pred --CC-CchHHHHHHHHHHHHHHHHHhhhhhhccCcchhHHhhC-CCChhHHHHHHH-HHHHHHHHhhhc-cccccHHHHH
Q 013039 267 --GP-MWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLS-LEKPTWLIVMAN-FFVVVHVIGSYQ-IYAMPVFDMI 340 (451)
Q Consensus 267 --~~-~~~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~~~~il~~-~~~~~~~~~~~~-~~~~i~~~~s~p-l~~~~~~~~~ 340 (451)
++ .......+..+...+..++|.......+...+..++.. ++.......++. +.+.++.+++-- ...++.-..+
T Consensus 247 ~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l 326 (501)
T 2jln_A 247 KADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTL 326 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 11 11223344555555555555543333333333334333 222222233444 555555555444 3677777777
Q ss_pred HHHhh
Q 013039 341 ETLLV 345 (451)
Q Consensus 341 ~~~~~ 345 (451)
.+...
T Consensus 327 ~~~~~ 331 (501)
T 2jln_A 327 CSTFP 331 (501)
T ss_dssp HHHST
T ss_pred HHhCc
Confidence 77753
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.31 E-value=0.00043 Score=70.02 Aligned_cols=151 Identities=15% Similarity=0.140 Sum_probs=79.8
Q ss_pred cccCCChHHHHHHHHHhhhhccc-cccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHH
Q 013039 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (451)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~ 113 (451)
-..|+.+++...+.+..+.+++. .+++|-...+.|+........ .++.....+..+....++. +..|.+|.-++-
T Consensus 17 laGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~---~~~T~~e~l~~R 92 (530)
T 3dh4_A 17 XAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEK---GIYTIPEFVEKR 92 (530)
T ss_dssp CCCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT---TCCSHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHHc---CCccHHHHHHHH
Confidence 34688999999999998888875 888998878788753321111 1111112222333333332 245999999999
Q ss_pred hcccccchhhHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 013039 114 FGEKLGLYIVVPQQLI-VEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192 (451)
Q Consensus 114 ~G~~~g~~~~~~~~~~-~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 192 (451)
||++.+ .+..+...+ ..+..+.+.+...+..++.++ .++....+++..+++..-+..-.++...+...+
T Consensus 93 fg~~~~-~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~---------Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~i 162 (530)
T 3dh4_A 93 FNKKLK-TILAVFWISLYIFVNLTSVLYLGGLALETIL---------GIPLMYSILGLALFALVYSIYGGLSAVVWTDVI 162 (530)
T ss_dssp TCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT---------TCCHHHHHHHHHHHHHHTTC------CCSHHHH
T ss_pred cCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 998654 544443332 222222222222333333332 244444455555555555666677777666666
Q ss_pred HHHHHHH
Q 013039 193 AAVMSLS 199 (451)
Q Consensus 193 ~~~~~v~ 199 (451)
-.++.+.
T Consensus 163 Q~~im~~ 169 (530)
T 3dh4_A 163 QVFFLVL 169 (530)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6654443
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.01 E-value=0.0018 Score=66.42 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=76.1
Q ss_pred ccCCChHHHHHHHHHhhhhccc-cccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHh
Q 013039 36 SSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (451)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~ 114 (451)
..|+.+++...+.+..+.+++. .++.|....+.|+......+. ..+........+..-.++. +..|.+|..++-|
T Consensus 47 aGR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~---~~~T~~e~l~~Rf 122 (593)
T 2xq2_A 47 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEK---GIYTIPEFVEKRF 122 (593)
T ss_dssp ----CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT---TCCSHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC---CCCCcHHHHHHHc
Confidence 3578899999999988888775 678898777788643211111 1111111222233333332 2459999999999
Q ss_pred cccccchhhHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 013039 115 GEKLGLYIVVPQQLI-VEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (451)
Q Consensus 115 G~~~g~~~~~~~~~~-~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 193 (451)
|++.+ .+..+...+ ..+......+...+..++.++ +++....+++..+++...+..-.++...+...+-
T Consensus 123 g~~~~-~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~---------Gi~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ 192 (593)
T 2xq2_A 123 NKKLK-TILAVFWISLYIFVNLTSVLYLGGLALETIL---------GIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQ 192 (593)
T ss_dssp CHHHH-HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHHTTC---CCHHHHHH
T ss_pred cCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 97654 444433322 222222223333444444443 2344444445555555556666677666666555
Q ss_pred HHHHH
Q 013039 194 AVMSL 198 (451)
Q Consensus 194 ~~~~v 198 (451)
.+..+
T Consensus 193 ~iiml 197 (593)
T 2xq2_A 193 VFFLV 197 (593)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=93.48 E-value=6.6 Score=38.97 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=26.5
Q ss_pred ChHHHHHHHHHhhhhccc-cccHHHHHHhhChh
Q 013039 40 AKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWG 71 (451)
Q Consensus 40 ~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~ 71 (451)
.+..+-++..++..+|-| +.=.||...+-|-.
T Consensus 9 ~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGg 41 (519)
T 2a65_A 9 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41 (519)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTH
T ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCc
Confidence 455788999999999999 88899988777744
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=88.19 E-value=22 Score=35.24 Aligned_cols=157 Identities=15% Similarity=0.111 Sum_probs=80.2
Q ss_pred ccCCChHHHHHHHHHhhhhccccccH----HHH-HHh--hC-----hhHHHHHHHHHHHHHHHHHHHHHHhhhh---cCC
Q 013039 36 SSRNAKWWYSAFHNVTAMVGAGVLSL----PYA-MAQ--LG-----WGPGVAILILSWIITLYTLWQMVEMHEM---VPG 100 (451)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~l----P~a-~~~--~G-----~~~gii~~i~~~~~~~~s~~~l~~~~~~---~~~ 100 (451)
++.+.|.++-+..++.+-+|+|++.- |.. +.+ .| .-.+.....+=+.+.-|+.+.+.-.+-. ++.
T Consensus 92 ~kPefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~yrk 171 (539)
T 4ain_A 92 EAPEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRV 171 (539)
T ss_dssp CCCSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCCCT
T ss_pred CCCCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhcC
Confidence 45678889999999999999998853 322 211 11 1123333444455555565555543321 211
Q ss_pred CccCC-----HHHHHHH-HhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHH
Q 013039 101 KRFDR-----YHELGQH-AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVH 174 (451)
Q Consensus 101 ~~~~s-----y~~~~~~-~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 174 (451)
.+..+ |+=++++ .-|+ .| .+++++-.+...+....-+-+....+..-++...+-+..+...+..+++...++
T Consensus 172 ~~pl~iss~l~PllG~r~~~G~-~G-~~IDilav~atv~GvatSLGlg~~Qi~~Gl~~lfGi~~~~~~~qi~ii~vit~i 249 (539)
T 4ain_A 172 GRKQLLSSAFVPLIGEKGAEGW-LG-KLIDILAIIATVFGTACSLGLGALQIGAGLSAANIIEDPSDWTIVGIVSVLTLA 249 (539)
T ss_dssp CCCSCTTGGGHHHHHHHHTTSH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCSTTTTTHHHHHHHHH
T ss_pred CCCCcHHHHhHhhcCCCccCCc-ch-hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Confidence 11112 5556666 5664 67 677777776666555555555556666556655543211122233333333344
Q ss_pred HHHhcCCCc-hhHHHHHHHHH
Q 013039 175 FVLSHLPNF-NAIAGVSLAAA 194 (451)
Q Consensus 175 ~pl~~~~~l-~~l~~~s~~~~ 194 (451)
+.++....+ |..+++|.+.+
T Consensus 250 ~~~Sa~sGl~kGIk~LS~~N~ 270 (539)
T 4ain_A 250 FIFSAISGVGKGIQYLSNANM 270 (539)
T ss_dssp HHHHHHC---CCHHHHGGGHC
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 444544443 33444444433
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=57.79 E-value=95 Score=30.45 Aligned_cols=163 Identities=13% Similarity=0.072 Sum_probs=83.9
Q ss_pred ccCCChHHHHHHHHHhhhhccccccH----HHH-HHh--hC----hh----HHHHHHHHHHHHHHHHHHHHHH-----hh
Q 013039 36 SSRNAKWWYSAFHNVTAMVGAGVLSL----PYA-MAQ--LG----WG----PGVAILILSWIITLYTLWQMVE-----MH 95 (451)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~l----P~a-~~~--~G----~~----~gii~~i~~~~~~~~s~~~l~~-----~~ 95 (451)
++.+.+.++-+..++.+-+|+|++.- |.. +.+ .| -. .+.....+=+.+..|+.+.+.- ..
T Consensus 87 ~kPefs~~sW~aMlF~aGmGiGl~fwgvaEP~~h~~~pP~~~~~~s~eAa~~Am~~tffHWG~~~WaiYal~~lalayf~ 166 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISSPPFGMEGYSAPAKEIGLAYSLFHWGPLPWATYSFLSVAFAYFF 166 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCSTTCCTTCHHHHHHHHHHHHHHTSHHHHHTTHHHHHHHHHHH
T ss_pred CCCCCccchHHHHHHHHhhhhHHhhhhhhhhHHHccCCCCCCCCCcHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999998874 322 221 11 11 1122222323333333333332 22
Q ss_pred h-hcCC-C--ccCCHHHHH-HHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHH
Q 013039 96 E-MVPG-K--RFDRYHELG-QHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIF 170 (451)
Q Consensus 96 ~-~~~~-~--~~~sy~~~~-~~~~G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 170 (451)
. |+.. . |..=|+-++ ++.-|+ .| .++|++-.+...+....-+-+....+..-++...+-+.. ...+..+++.
T Consensus 167 y~r~~~pl~iss~l~PllG~~r~~G~-~G-~~IDilav~at~~G~atsLGlg~~qi~~Gl~~lfGi~~~-~~~qi~ii~v 243 (509)
T 2wsw_A 167 FVRKMEVIRPSSTLVPLVGEKHVNGL-FG-TVVDNFYLVALILAMGTSLGLATPLVTECIQYLFGIPHT-LQLDAIIISC 243 (509)
T ss_dssp HTSCCCCCSGGGGCHHHHHHHHHHSH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHH
T ss_pred HHcCCCCcchHHHhHhhcCCcccCCc-hh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-cHHHHHHHHH
Confidence 2 2111 1 112366677 677774 78 567776665555444444455555555555555432211 1112222333
Q ss_pred HHHHHHHhcCCCc-hhHHHHHHHHHHHHHHHH
Q 013039 171 ASVHFVLSHLPNF-NAIAGVSLAAAVMSLSYS 201 (451)
Q Consensus 171 ~~i~~pl~~~~~l-~~l~~~s~~~~~~~v~~~ 201 (451)
..+++..+....+ |..+++|.+.+.+.+..+
T Consensus 244 it~~~~~Sa~sGl~kGIk~LS~~N~~la~~Ll 275 (509)
T 2wsw_A 244 WILLNAICVAFGLQKGVKIASDVRTYLSFLML 275 (509)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666677 667777777766555433
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=20.96 E-value=1.3e+02 Score=18.39 Aligned_cols=11 Identities=27% Similarity=0.446 Sum_probs=5.5
Q ss_pred hhhhhhhhhhh
Q 013039 380 GLLGFFGGFAF 390 (451)
Q Consensus 380 ~i~~~~G~~~~ 390 (451)
...+++|++..
T Consensus 12 IA~gVVgGv~~ 22 (44)
T 2l2t_A 12 IAAGVIGGLFI 22 (44)
T ss_dssp HHHHHHHHHHH
T ss_pred EEEeehHHHHH
Confidence 34455555554
No 11
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=20.14 E-value=4e+02 Score=23.16 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccc
Q 013039 310 PTWLIVMANFFVVVHVIGSYQIYAM 334 (451)
Q Consensus 310 ~~~~~~~~~~~~~i~~~~s~pl~~~ 334 (451)
+++...+.++.....+..-.|+...
T Consensus 147 ~~Yl~fv~~l~l~fGl~FelPvi~~ 171 (249)
T 4b4a_A 147 DMYISFVLKLVVAFGIAFEMPIVLY 171 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777776543
Done!