Query 013040
Match_columns 451
No_of_seqs 70 out of 72
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 03:05:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qz7_B Axin; beta-catenin, pro 13.6 84 0.0029 25.3 1.9 24 236-259 21-44 (70)
2 2p8i_A Putative dioxygenase; Y 13.1 64 0.0022 28.0 1.2 18 403-420 69-86 (117)
3 2peb_A Putative dioxygenase; s 12.0 73 0.0025 27.9 1.2 18 403-420 66-83 (122)
4 3ech_C 25-MER fragment of prot 10.7 1.1E+02 0.0038 19.9 1.4 17 147-163 1-17 (25)
5 3nkl_A UDP-D-quinovosamine 4-d 7.9 2.4E+02 0.0082 22.7 2.8 23 404-427 17-39 (141)
6 1xou_A ESPA; coiled coil, heli 7.5 89 0.003 29.3 0.0 27 406-432 107-138 (192)
7 2zjr_L 50S ribosomal protein L 6.6 1.2E+02 0.0039 26.2 0.2 20 254-273 7-29 (114)
8 3r8s_O 50S ribosomal protein L 6.4 1.9E+02 0.0064 24.8 1.5 20 253-273 6-25 (116)
9 2bhm_A Type IV secretion syste 6.2 2.5E+02 0.0085 24.2 2.2 21 409-429 141-161 (164)
10 1m45_B IQ2, IQ2 motif from MYO 5.9 62 0.0021 21.2 -1.4 11 407-417 6-16 (26)
No 1
>1qz7_B Axin; beta-catenin, protein-protein complex, cell adhesion; 2.20A {Xenopus laevis}
Probab=13.56 E-value=84 Score=25.28 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=16.8
Q ss_pred chhhhhcccCCCCCHHHHHHHHHH
Q 013040 236 GLHNMFEGRRSGSDAGFIFREHLR 259 (451)
Q Consensus 236 ~~~klfe~~~~~sDv~~il~EH~R 259 (451)
||..++-++..+-|..+||.||+.
T Consensus 21 g~~g~~~rd~~EedPesILDeHvs 44 (70)
T 1qz7_B 21 GCVGMQIRDAHEENPESILDEHVQ 44 (70)
T ss_pred cccccccccccccChHHHHHHHHH
Confidence 444555454446799999999974
No 2
>2p8i_A Putative dioxygenase; YP_555069.1, structural genomics, JOIN for structural genomics, JCSG, protein structure initiative oxidoreductase; HET: MSE CIT; 1.40A {Burkholderia xenovorans} SCOP: d.58.55.1 PDB: 2nyh_A*
Probab=13.12 E-value=64 Score=28.00 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=16.3
Q ss_pred HHHHHHHhhcCCCceEEE
Q 013040 403 RQALVAYLQHNNGGITLF 420 (451)
Q Consensus 403 RQAlVtYLq~N~~GITvf 420 (451)
-.++|.+|+.||||.+|+
T Consensus 69 f~~~v~WL~~nrg~LsVL 86 (117)
T 2p8i_A 69 FADLVGWLTLNHGALDIF 86 (117)
T ss_dssp HHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHhCCCCeEE
Confidence 458999999999999997
No 3
>2peb_A Putative dioxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.46A {Nostoc punctiforme}
Probab=11.97 E-value=73 Score=27.89 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=16.3
Q ss_pred HHHHHHHhhcCCCceEEE
Q 013040 403 RQALVAYLQHNNGGITLF 420 (451)
Q Consensus 403 RQAlVtYLq~N~~GITvf 420 (451)
-.++|.||+.||||.+|+
T Consensus 66 f~~~v~WL~lnrg~LsVL 83 (122)
T 2peb_A 66 FDKVVPWLMLNREGLDIL 83 (122)
T ss_dssp HHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHhCCCceEE
Confidence 458999999999999997
No 4
>3ech_C 25-MER fragment of protein ARMR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa}
Probab=10.67 E-value=1.1e+02 Score=19.92 Aligned_cols=17 Identities=47% Similarity=0.583 Sum_probs=12.5
Q ss_pred HhhHHHHHHHHHHHHHH
Q 013040 147 RRGYTRELDKAFRYLAC 163 (451)
Q Consensus 147 r~gY~~~l~~sfrlLa~ 163 (451)
|+||+++|.++-|-=|+
T Consensus 1 rr~~te~lrr~arrnaw 17 (25)
T 3ech_C 1 RRDYTEQLRRAARRNAW 17 (26)
T ss_dssp -CCHHHHHHHHHHHTHH
T ss_pred CCcHHHHHHHHHHHhHH
Confidence 68999999988776554
No 5
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=7.91 E-value=2.4e+02 Score=22.68 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=18.5
Q ss_pred HHHHHHhhcCCCceEEEEEEeehh
Q 013040 404 QALVAYLQHNNGGITLFGFALDRG 427 (451)
Q Consensus 404 QAlVtYLq~N~~GITvfGf~lDR~ 427 (451)
+.+..++++++ |..+.||+-|..
T Consensus 17 ~~l~~~l~~~~-g~~vvg~~d~~~ 39 (141)
T 3nkl_A 17 LQLANMLRQGK-EFHPIAFIDDDR 39 (141)
T ss_dssp HHHHHHHHHSS-SEEEEEEECSCG
T ss_pred HHHHHHHHhCC-CcEEEEEEECCc
Confidence 45788888887 899999997764
No 6
>1xou_A ESPA; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.1
Probab=7.51 E-value=89 Score=29.35 Aligned_cols=27 Identities=30% Similarity=0.597 Sum_probs=0.0
Q ss_pred HHHHhhcCCCceEEEEEE-----eehhhHHHH
Q 013040 406 LVAYLQHNNGGITLFGFA-----LDRGLLHTI 432 (451)
Q Consensus 406 lVtYLq~N~~GITvfGf~-----lDR~~LhTI 432 (451)
.+.|++.-|-||||=|-. ||.|=|-++
T Consensus 107 VI~Ymrd~~NgItVdG~s~IddyLdkG~LqaV 138 (192)
T 1xou_A 107 VISYINDPRNDITISGIDNINAQLGAGDLQTV 138 (192)
T ss_dssp --------------------------------
T ss_pred HHHHHHccCCCeeecCchhHHHHhccccHHHH
Confidence 489999999999999999 888776654
No 7
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=6.58 E-value=1.2e+02 Score=26.21 Aligned_cols=20 Identities=40% Similarity=0.677 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhh---hhhhHH
Q 013040 254 FREHLRIRKQLSAT---SHRYRF 273 (451)
Q Consensus 254 l~EH~RIR~qL~~I---SHRfR~ 273 (451)
.+.|.|||+.++.+ +.|+|.
T Consensus 7 ~~r~~r~r~ki~gt~~~~~rpRL 29 (114)
T 2zjr_L 7 IRRKLRTRRKVRTTTAASGRLRL 29 (114)
T ss_dssp -CHHHHHHHHHHSCSTTTCSEEE
T ss_pred HHHHHHHHhhhccccCCCCCCEE
Confidence 46799999999998 888873
No 8
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=6.44 E-value=1.9e+02 Score=24.78 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhhhhhhhHH
Q 013040 253 IFREHLRIRKQLSATSHRYRF 273 (451)
Q Consensus 253 il~EH~RIR~qL~~ISHRfR~ 273 (451)
-++.|.|+|+.+.. +-|+|.
T Consensus 6 r~~r~~r~R~ki~~-~~rpRL 25 (116)
T 3r8s_O 6 RIRRATRARRKLQE-LGATRL 25 (116)
T ss_dssp HHHHHHHHHHHHHT-TTCCEE
T ss_pred HHHHHHHHHHHhcc-CCCCEE
Confidence 45779999999988 888883
No 9
>2bhm_A Type IV secretion system protein VIRB8; bacterial protein, bacterial type IV secretion; 2.4A {Brucella melitensis biovar suis} SCOP: d.17.4.26
Probab=6.19 E-value=2.5e+02 Score=24.20 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=16.9
Q ss_pred HhhcCCCceEEEEEEeehhhH
Q 013040 409 YLQHNNGGITLFGFALDRGLL 429 (451)
Q Consensus 409 YLq~N~~GITvfGf~lDR~~L 429 (451)
-+..||.|+.|-.|-.|+..+
T Consensus 141 ~~~~NPlGf~Vt~y~~d~e~~ 161 (164)
T 2bhm_A 141 ARLTNPLGFNVTSYRVDPEMG 161 (164)
T ss_dssp HHTTCTTCEEEEEEEEEEC--
T ss_pred HHhhCCCceEEEEEeeCchhh
Confidence 357899999999999998753
No 10
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=5.94 E-value=62 Score=21.22 Aligned_cols=11 Identities=45% Similarity=0.785 Sum_probs=8.8
Q ss_pred HHHhhcCCCce
Q 013040 407 VAYLQHNNGGI 417 (451)
Q Consensus 407 VtYLq~N~~GI 417 (451)
+.|||||-.|.
T Consensus 6 ikylqnnikgf 16 (26)
T 1m45_B 6 IKYLQNNIKGF 16 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhccceE
Confidence 68999997764
Done!