Query 013040
Match_columns 451
No_of_seqs 70 out of 72
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 03:05:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013040.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013040hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p8ia1 d.58.55.1 (A:1-115) Pu 14.7 26 0.0019 28.4 1.2 19 402-420 67-85 (115)
2 d1g2ha_ a.4.1.12 (A:) Transcri 13.9 27 0.0019 24.7 1.0 18 115-132 44-61 (61)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 10.0 1.5E+02 0.011 24.9 4.9 30 107-136 65-94 (447)
4 d1vd6a1 c.1.18.3 (A:8-224) Put 8.3 81 0.0059 24.9 2.2 22 403-426 168-189 (217)
5 d1vp2a_ c.51.4.1 (A:) Putative 8.1 51 0.0037 27.7 0.9 12 266-277 170-181 (189)
6 d1lfma_ a.3.1.1 (A:) Mitochond 8.0 1.1E+02 0.008 21.5 2.7 18 396-413 84-101 (103)
7 d3dhxa1 d.58.18.13 (A:2-100) M 6.9 1.7E+02 0.012 21.7 3.4 25 400-424 74-98 (99)
8 d1ixra2 b.40.4.2 (A:1-62) DNA 6.7 58 0.0042 22.9 0.5 16 407-422 47-62 (62)
9 d1ql3a_ a.3.1.1 (A:) Cytochrom 6.4 1.4E+02 0.01 22.3 2.6 17 397-413 82-98 (99)
10 g2vt1.1 d.367.1.1 (A:237-257,B 6.1 90 0.0066 24.2 1.3 13 200-212 89-101 (102)
No 1
>d2p8ia1 d.58.55.1 (A:1-115) Putative dioxygenase BxeB0224 {Burkholderia xenovorans [TaxId: 36873]}
Probab=14.73 E-value=26 Score=28.40 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=16.7
Q ss_pred hHHHHHHHhhcCCCceEEE
Q 013040 402 IRQALVAYLQHNNGGITLF 420 (451)
Q Consensus 402 kRQAlVtYLq~N~~GITvf 420 (451)
.-.++|.+|+-||||.||+
T Consensus 67 ~F~~vv~WL~~nRg~LsVl 85 (115)
T d2p8ia1 67 QFADLVGWLTLNHGALDIF 85 (115)
T ss_dssp HHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHHhCCCceEE
Confidence 3567899999999999997
No 2
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=13.85 E-value=27 Score=24.69 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=14.6
Q ss_pred HHHHHHHhhhhhhcccce
Q 013040 115 LVGFFILSRFFSKYGLRH 132 (451)
Q Consensus 115 avSf~cLS~~~rkyGLRr 132 (451)
.|+--+|.+.++|||++|
T Consensus 44 gisr~tL~rKlkk~gi~k 61 (61)
T d1g2ha_ 44 GVSHTAIANKLKQYGIGK 61 (61)
T ss_dssp TSCTHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHhCCCC
Confidence 456678999999999976
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=10.04 E-value=1.5e+02 Score=24.90 Aligned_cols=30 Identities=17% Similarity=-0.077 Sum_probs=19.1
Q ss_pred ccchhhHHHHHHHHHhhhhhhcccceeecc
Q 013040 107 QFPESGLALVGFFILSRFFSKYGLRHLLFL 136 (451)
Q Consensus 107 q~s~s~lAavSf~cLS~~~rkyGLRr~Lfl 136 (451)
.-......+++-+-...+..|||.|+.+.+
T Consensus 65 ~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~ 94 (447)
T d1pw4a_ 65 LSGISIAYGFSKFIMGSVSDRSNPRVFLPA 94 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 333334445555566677889999987754
No 4
>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]}
Probab=8.27 E-value=81 Score=24.93 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=18.0
Q ss_pred HHHHHHHhhcCCCceEEEEEEeeh
Q 013040 403 RQALVAYLQHNNGGITLFGFALDR 426 (451)
Q Consensus 403 RQAlVtYLq~N~~GITvfGf~lDR 426 (451)
.+++|..+.++ |+.||.|++|-
T Consensus 168 ~~~~v~~~~~~--g~~v~~wTvn~ 189 (217)
T d1vd6a1 168 TEEAVAGWRKR--GLFVVAWTVNE 189 (217)
T ss_dssp CHHHHHHHHHT--TCEEEEECCCC
T ss_pred HHHHHHHHHHC--CCEEEEECCCC
Confidence 35688888865 99999999964
No 5
>d1vp2a_ c.51.4.1 (A:) Putative inosine/xanthosine triphosphate pyrophosphatase TM0159 {Thermotoga maritima [TaxId: 2336]}
Probab=8.11 E-value=51 Score=27.75 Aligned_cols=12 Identities=33% Similarity=0.326 Sum_probs=9.2
Q ss_pred hhhhhhHHHHHH
Q 013040 266 ATSHRYRFFIIA 277 (451)
Q Consensus 266 ~ISHRfR~Fil~ 277 (451)
+||||.|.+--+
T Consensus 170 ~iSHR~~A~~kl 181 (189)
T d1vp2a_ 170 KISHRSKAFRKL 181 (189)
T ss_dssp HHSHHHHHHHHH
T ss_pred hcCHHHHHHHHH
Confidence 589999987543
No 6
>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]}
Probab=8.02 E-value=1.1e+02 Score=21.51 Aligned_cols=18 Identities=39% Similarity=0.349 Sum_probs=14.7
Q ss_pred CCchHHhHHHHHHHhhcC
Q 013040 396 EPPSFQIRQALVAYLQHN 413 (451)
Q Consensus 396 ~~~SfqkRQAlVtYLq~N 413 (451)
..-|=|+|+++|.||+..
T Consensus 84 ~~ls~~ei~dviAYLkt~ 101 (103)
T d1lfma_ 84 GIKKKGERQDLVAYLKSA 101 (103)
T ss_dssp CCCSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 345789999999999864
No 7
>d3dhxa1 d.58.18.13 (A:2-100) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
Probab=6.94 E-value=1.7e+02 Score=21.69 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=22.0
Q ss_pred HHhHHHHHHHhhcCCCceEEEEEEe
Q 013040 400 FQIRQALVAYLQHNNGGITLFGFAL 424 (451)
Q Consensus 400 fqkRQAlVtYLq~N~~GITvfGf~l 424 (451)
=++.|+...||+.+.--+.|-|+++
T Consensus 74 ~~~i~~al~~L~~~~v~vEvlgyV~ 98 (99)
T d3dhxa1 74 QQDTQAAIAWLQEHHVKVEVLGYVL 98 (99)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCeEEEeeeec
Confidence 4677888999999999999999987
No 8
>d1ixra2 b.40.4.2 (A:1-62) DNA helicase RuvA subunit, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=6.71 E-value=58 Score=22.94 Aligned_cols=16 Identities=31% Similarity=0.654 Sum_probs=12.9
Q ss_pred HHHhhcCCCceEEEEE
Q 013040 407 VAYLQHNNGGITLFGF 422 (451)
Q Consensus 407 VtYLq~N~~GITvfGf 422 (451)
-||++-...++++|||
T Consensus 47 ~t~~~vrED~~~LyGF 62 (62)
T d1ixra2 47 HTHLLLKEEGLSLYGF 62 (62)
T ss_dssp EECCCCCSSCCCEEEE
T ss_pred EEEEEEecCCCCccCC
Confidence 4677777788999998
No 9
>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans [TaxId: 266]}
Probab=6.36 E-value=1.4e+02 Score=22.32 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=14.3
Q ss_pred CchHHhHHHHHHHhhcC
Q 013040 397 PPSFQIRQALVAYLQHN 413 (451)
Q Consensus 397 ~~SfqkRQAlVtYLq~N 413 (451)
..+=+.|++++.||+..
T Consensus 82 l~~~~d~~dliaYLks~ 98 (99)
T d1ql3a_ 82 LPKIEDRANLIAYLEGQ 98 (99)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhhc
Confidence 45688999999999875
No 10
>g2vt1.1 d.367.1.1 (A:237-257,B:258-338) Surface presentation of antigens protein SpaS {Shigella flexneri [TaxId: 623]}
Probab=6.06 E-value=90 Score=24.24 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHH
Q 013040 200 VMFVLVLASWVYR 212 (451)
Q Consensus 200 v~~~l~l~SW~Yr 212 (451)
-.-++++.+|+||
T Consensus 89 y~aVAeIL~~v~~ 101 (102)
T g2vt1.1 89 LDEVLRLIVWLEQ 101 (102)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4458899999997
Done!