Citrus Sinensis ID: 013042

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-
Protein Sequence
MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSKSRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRASYSTSGPVSSGVTSGSASLKKSNSGPLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKVSGPLDSMGSMKIPSSVPHNQAITVLSQDEDFDFKRNFPKPIFCCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISGVVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRLKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASKNDVIPV
Secondary Structure (PSIPRED)
ccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHccccccEEEEEEEEEEccccccccccccccEEEEEccEEEEccccccccccccccccccccHHccccEEEEEEccccccEEEEEEcccccEEEEEEccEEEEcccccccccHHHHHHHHHcccccHHHHHHHHccccccccEEEEEEEEEEcccEEEEccccccccccccccEEcccccccEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccEEEEEEEEEcccccccccccccccEEEEEEEEEEEcccccccccccccccEEcccHHHHHEEEEEEEccccccEEEEEcccccEEEEEEcccEEEEEccccccccHHHHHHHHHccccccccEEEEEccEEEcccEEEEEEEEEEcccEEEEEccccccccccHHHHEEccccEcEEEEEEcccccccEEcc
Coil and Loop (DISEMBL)
mgsrfpshqlsnglyvsgrpeqpkertptmssvampytggdikksgelgkmfdipvdgsksrksgpinnapsrtgsfggaashsgpimpnaasrasystsgpvssgvtsgsaslkksnsgplnkhgeplkkssgpqsggvtpsgrqnsgplapalpttglitsgpissaplnssgaprkvsgpldsmgsmkipssvphnqaitvlsqdedfdfkrnfpkpiFCCVAAlfgwntfwGRKAIISYIARypdaelrnakngqfvKISGVvtcgnvplessfqkvprciytstslyeyrgwgskaanpthrrftWGLRSLERRAVDFYISDFQSGLRALVKtgygarvtpyvddslaidvnpgkeelsPEFIRWLAERNLSSDDRIMRLKegyikegstVSVMGVVqrndnvlmivpppepittgcqwakcivpaSLDGIVLRCedaskndvipv
Flexible Loop (DISEMBL)
mgsrfpshqlsnglyvsgrpeqpkertptmssvampytggdikksgelGKMFDIPvdgsksrksgpinnAPSRTGSFGGAASHSGPIMPNAASRASYSTSGPVSSGVTSGSASLKksnsgplnkhgeplkkssgpqSGGVTPSGRQNSGPLAPALPTTGLITSGPIssaplnssgapRKVSGPLDSMGSMKIPSSVPHNQAITVLSQDEDFDFKRNFPKPIFCCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISGVVTCGnvplessfqkvprcIYTSTSLYEYRgwgskaanpthrrfTWGLRSLERRAVDFYISDFQSGLRALVKTGygarvtpyvddslaidvnpgkeelspefIRWLAernlssddrIMRLKegyikegstvsVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRcedaskndvipv
Low Complexity Region (SEG)
MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSKSRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRasystsgpvssgvtsgsasLKKSNSGPLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKVSGPLDSMGSMKIPSSVPHNQAITVLSQDEDFDFKRNFPKPIFCCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISGVVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRLKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASKNDVIPV
Disordered region (IsUnstruct)
*********************************************************************************************************************************************************************************************************ITVLSQDEDFDFKRNFPKPIFCCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISGVVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRLKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCE**********
Disordered Region (DISOPRED)
*************************************************************************************************************************************************************************************************************SQDEDFDFKRNFPKPIFCCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISGVVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPG*EELSPEFIRWLAERNLSSDDRIMRLKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDAS***VIPV
Disordered Region (DISEMBL)
**********SNGLYVSG************SSVAMPYTGGDIKKSGELGKMFDIPVDGSKSRKSGPINNAPSRTGSFGGAASHSGPIMPNA********************************************************SGPLAPALPTTGLITSGPISSAPLNSSGAPRKVSGPLDSMGSMKIPSSVPHNQAITVLSQDEDFDFKRNFPKPIFCCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISGVVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRLKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASKNDVIPV
Disordered Region (DISPRO)
***************************************GDIKKSGELGKMFDIPVD*************************************************************************************************LPT******************************************QAITVLSQDEDFDFKRNFPKPIFCCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISGVVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRLKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASKNDVIPV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSKSRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRASYSTSGPVSSGVTSGSASLKKSNSGPLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKVSGPLDSMGSMKIPSSVPHNQAITVLSQDEDFDFKRNFPKPIFCCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISGVVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRLKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASKNDVIPV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	451	2.2.26 [Sep-21-2011]
Q9FZ45	474	Uncharacterized membrane	yes	no	0.971	0.924	0.671	0.0

>sp|Q9FZ45|Y1686_ARATH Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1

 Score =  637 bits (1644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/487 (67%), Positives = 371/487 (76%), Gaps = 49/487 (10%)

Query: 1   MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK 60
           MGSR+PSHQLSNGL+VSGRPEQPKER PTMS+VAMPYTGGDIK+SGELGKMFDIP DG+K
Sbjct: 1   MGSRYPSHQLSNGLFVSGRPEQPKERAPTMSAVAMPYTGGDIKRSGELGKMFDIPADGTK 60

Query: 61  SRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRASYSTSGPVSSGVTSGSASLKKSNSG 120
           SRKSGPI  APSR+GSF G A  SGP  P A  R S S +       ++GS S+KK+NSG
Sbjct: 61  SRKSGPIPGAPSRSGSFAGTA-QSGPGAPMATGRMSGSLA-------SAGSVSMKKTNSG 112

Query: 121 PLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKV 180
           PL+KHGEPLKKSSGPQSGGVT   RQNSG + P LP TGLITSGPI+S PLNSSGAPRKV
Sbjct: 113 PLSKHGEPLKKSSGPQSGGVT---RQNSGSI-PILPATGLITSGPITSGPLNSSGAPRKV 168

Query: 181 SGPLDSMGSMK--IPSSVPHNQAITVLSQDEDFDFKRNFPKPI----------------- 221
           SGPLDS G MK  +P+ V HNQA+T L  ++DF   ++FPKP+                 
Sbjct: 169 SGPLDSSGLMKSHMPTVV-HNQAVTTLGPEDDFSCLKSFPKPVLWLVVLIFIMGFLAGGF 227

Query: 222 -----------------FCCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKIS 264
                            F  VAALF WN  WGR+ I  +IARYPDA+LR AKNGQ VK++
Sbjct: 228 ILGAVHNPILLVVVAILFTVVAALFIWNICWGRRGITDFIARYPDADLRTAKNGQHVKVT 287

Query: 265 GVVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFY 324
           GVVTCGNVPLESSF +VPRC+YTST LYEYRGWGSK AN +HR FTWGLRS ER  VDFY
Sbjct: 288 GVVTCGNVPLESSFHRVPRCVYTSTCLYEYRGWGSKPANSSHRHFTWGLRSSERHVVDFY 347

Query: 325 ISDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMR 384
           ISDFQSGLRALVKTG GA+VTP VDDS+ ID   G E++SP+F+RWL ++NL+SDDRIMR
Sbjct: 348 ISDFQSGLRALVKTGSGAKVTPLVDDSVVIDFKQGSEQVSPDFVRWLGKKNLTSDDRIMR 407

Query: 385 LKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDAS 444
           LKEGYIKEGSTVSV+GVVQRNDNVLMIVP  EP+  G QW +C  P SL+GIVLRCED+S
Sbjct: 408 LKEGYIKEGSTVSVIGVVQRNDNVLMIVPSSEPLAAGWQWRRCTFPTSLEGIVLRCEDSS 467

Query: 445 KNDVIPV 451
             D IPV
Sbjct: 468 NVDAIPV 474


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.132    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,053,160
Number of Sequences: 539616
Number of extensions: 8122743
Number of successful extensions: 21066
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 446
Number of HSP's that attempted gapping in prelim test: 19075
Number of HSP's gapped (non-prelim): 1675
length of query: 451
length of database: 191,569,459
effective HSP length: 121
effective length of query: 330
effective length of database: 126,275,923
effective search space: 41671054590
effective search space used: 41671054590
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	451
224097428	485	predicted protein [Populus trichocarpa]	0.997	0.927	0.820	0.0
224113259	485	predicted protein [Populus trichocarpa]	0.997	0.927	0.818	0.0
255544532	486	conserved hypothetical protein [Ricinus	1.0	0.927	0.827	0.0
356526298	485	PREDICTED: uncharacterized membrane prot	0.997	0.927	0.775	0.0
356523113	484	PREDICTED: uncharacterized membrane prot	0.995	0.927	0.771	0.0
356526336	487	PREDICTED: uncharacterized membrane prot	0.982	0.909	0.767	0.0
356521668	483	PREDICTED: uncharacterized membrane prot	0.982	0.917	0.765	0.0
388509912	483	unknown [Lotus japonicus]	0.993	0.927	0.757	0.0
225445951	481	PREDICTED: uncharacterized membrane prot	0.988	0.927	0.751	0.0
449512773	485	PREDICTED: uncharacterized membrane prot	1.0	0.929	0.740	0.0

>gi|224097428|ref|XP_002310930.1| predicted protein [Populus trichocarpa] gi|222850750|gb|EEE88297.1| predicted protein [Populus trichocarpa]

 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/486 (82%), Positives = 424/486 (87%), Gaps = 36/486 (7%)

Query: 1   MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK 60
           MGSRFPSHQLSNGLYVSGRPEQPKER PTMSSVAMPYTGGDIK+SGELGKMFDIPVDGSK
Sbjct: 1   MGSRFPSHQLSNGLYVSGRPEQPKERAPTMSSVAMPYTGGDIKRSGELGKMFDIPVDGSK 60

Query: 61  SRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRASYSTSGPVSSGVTSGSASLKKSNSG 120
           SRKSGPI  APSRTGSFGGAASHSGPIMPNAA+RA+Y+TSG VSSG T GS SLKKSNSG
Sbjct: 61  SRKSGPITGAPSRTGSFGGAASHSGPIMPNAAARAAYTTSGAVSSGGT-GSVSLKKSNSG 119

Query: 121 PLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKV 180
           PLNKHGEP+KKSSGPQSGGVTPSGRQNSGP+ P LPTTGLITSGPISS PLNSSGAPRKV
Sbjct: 120 PLNKHGEPVKKSSGPQSGGVTPSGRQNSGPIPPVLPTTGLITSGPISSGPLNSSGAPRKV 179

Query: 181 SGPLDSMGSMKIPS-SVPHNQAITVLSQDEDFDFKRNFPKPI------------------ 221
           SGPL+SMGSMK P  +V HNQA+TVLSQD+DF F++NFPK I                  
Sbjct: 180 SGPLESMGSMKNPGYAVIHNQAVTVLSQDDDFSFRKNFPKLILWSLILLFVMGFIAGGFI 239

Query: 222 ----------------FCCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISG 265
                           F  VA+ F WNT +GR+AI++YIARYPDAELRNAKNGQFVKISG
Sbjct: 240 LGAVHNAILLIVVVVLFGAVASFFIWNTCFGRRAIMAYIARYPDAELRNAKNGQFVKISG 299

Query: 266 VVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYI 325
           VVTCGNVPLESSFQ+VPRC+YTSTSLYEYRGW SKAANPTHRRF+WGLRSLERRAVDFYI
Sbjct: 300 VVTCGNVPLESSFQRVPRCVYTSTSLYEYRGWDSKAANPTHRRFSWGLRSLERRAVDFYI 359

Query: 326 SDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRL 385
           SDFQSGLRALVKTGYGARVTPYVDDSL ID NPG EELSP+F++WL ERNLSSDDRIMR+
Sbjct: 360 SDFQSGLRALVKTGYGARVTPYVDDSLVIDANPGAEELSPDFVKWLGERNLSSDDRIMRM 419

Query: 386 KEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASK 445
           KEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCI PASL+GIVLRCED SK
Sbjct: 420 KEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIFPASLEGIVLRCEDTSK 479

Query: 446 NDVIPV 451
           NDVIPV
Sbjct: 480 NDVIPV 485

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113259|ref|XP_002316439.1| predicted protein [Populus trichocarpa] gi|222865479|gb|EEF02610.1| predicted protein [Populus trichocarpa]

 Score =  799 bits (2064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/486 (81%), Positives = 425/486 (87%), Gaps = 36/486 (7%)

Query: 1   MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK 60
           MGSRFPSHQLSNGLYVSGRPEQPKER PTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK
Sbjct: 1   MGSRFPSHQLSNGLYVSGRPEQPKERAPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK 60

Query: 61  SRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRASYSTSGPVSSGVTSGSASLKKSNSG 120
           SRKSGPI  APSRTGSFGGAASHSGPIMPNAA+RA+++TSG +SSG T GSASLKKSNSG
Sbjct: 61  SRKSGPITGAPSRTGSFGGAASHSGPIMPNAAARAAHTTSGAMSSGGT-GSASLKKSNSG 119

Query: 121 PLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKV 180
           PLNKHGEP+KK SGPQSGGVTPSGRQNSGP+ P LPTTGLITSGPISS PLNSSGAPRKV
Sbjct: 120 PLNKHGEPVKKLSGPQSGGVTPSGRQNSGPIPPVLPTTGLITSGPISSGPLNSSGAPRKV 179

Query: 181 SGPLDSMGSMKIP-SSVPHNQAITVLSQDEDFDFKRNFPKPI------------------ 221
           SGPL+SMGSMKIP S++ HNQA+TVLSQD+DF F++ FPK I                  
Sbjct: 180 SGPLESMGSMKIPGSAILHNQAVTVLSQDDDFSFRKTFPKLILWSLILLFLMGFIAGGFI 239

Query: 222 ----------------FCCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISG 265
                           F  V +LF WNT +GRKAI++YIARYPDAELRNAKNGQFVKISG
Sbjct: 240 LAAVHNAILLIVVVVLFGAVTSLFIWNTCFGRKAIMAYIARYPDAELRNAKNGQFVKISG 299

Query: 266 VVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYI 325
           VVTCGNVPLESSFQ++PRC+YTSTSLYEYRGW SKAANPTHRRF+WGLRSLERRAVDFYI
Sbjct: 300 VVTCGNVPLESSFQRIPRCVYTSTSLYEYRGWDSKAANPTHRRFSWGLRSLERRAVDFYI 359

Query: 326 SDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRL 385
           SDFQSGLRALVKTGYGARVTPYVDDSL IDVNPG EELSPEFI+WL ERNLSSDDRIMR+
Sbjct: 360 SDFQSGLRALVKTGYGARVTPYVDDSLVIDVNPGTEELSPEFIKWLGERNLSSDDRIMRM 419

Query: 386 KEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASK 445
           KEGYIKEGSTVSVMGVVQRN+NVLMIVPPPEPIT+GCQW KCI PASL+GIVLRCED SK
Sbjct: 420 KEGYIKEGSTVSVMGVVQRNENVLMIVPPPEPITSGCQWTKCIFPASLEGIVLRCEDTSK 479

Query: 446 NDVIPV 451
           NDVIPV
Sbjct: 480 NDVIPV 485

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544532|ref|XP_002513327.1| conserved hypothetical protein [Ricinus communis] gi|223547235|gb|EEF48730.1| conserved hypothetical protein [Ricinus communis]

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/486 (82%), Positives = 423/486 (87%), Gaps = 35/486 (7%)

Query: 1   MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK 60
           MGSRFPSHQLSNGLYVSGRPEQPKER PTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK
Sbjct: 1   MGSRFPSHQLSNGLYVSGRPEQPKERPPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK 60

Query: 61  SRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRASYSTSGPVSSGVTSGSASLKKSNSG 120
           SRKSGPI  APSRTGSFGGAASHSGPIMPNAA+RA+Y+TSG  SSG  SGSASLKKSNSG
Sbjct: 61  SRKSGPITGAPSRTGSFGGAASHSGPIMPNAAARAAYTTSGAASSGGVSGSASLKKSNSG 120

Query: 121 PLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKV 180
           PLN+HG+P+KKSSGPQSGGVTPSGRQNSGPL P LP TGLITSGPISS PLNSSGAPRKV
Sbjct: 121 PLNRHGDPVKKSSGPQSGGVTPSGRQNSGPLPPVLPATGLITSGPISSGPLNSSGAPRKV 180

Query: 181 SGPLDSMGSMKIP-SSVPHNQAITVLSQDEDFDFKRNFPKPI------------------ 221
           SGPL+SMGSMK+P S+V HNQA+T+L+Q++DF F++NFPKPI                  
Sbjct: 181 SGPLESMGSMKLPGSAVVHNQAVTILTQEDDFSFRKNFPKPILWSLILLFVMGFIAGGFI 240

Query: 222 ----------------FCCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISG 265
                           F  VA LF WNTF+GRKAI+ +IARYPDAELRNAKNGQFVKISG
Sbjct: 241 LGAVHNAILLIVVVILFGAVAGLFIWNTFFGRKAIMGFIARYPDAELRNAKNGQFVKISG 300

Query: 266 VVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYI 325
           VVTCGNVPLESSFQKVPRC+YTSTSLYEYRGW SKAANPTHRRFTWGLRSLERRAVDFYI
Sbjct: 301 VVTCGNVPLESSFQKVPRCVYTSTSLYEYRGWDSKAANPTHRRFTWGLRSLERRAVDFYI 360

Query: 326 SDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRL 385
           SDFQSGLRALVKTGY ARVTPYVDDSL IDVNP  EELSPEFIRWL ERNLS DDRIMR+
Sbjct: 361 SDFQSGLRALVKTGYAARVTPYVDDSLVIDVNPSTEELSPEFIRWLGERNLSRDDRIMRM 420

Query: 386 KEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASK 445
           KEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQW KCI PASLDGIVLRCED SK
Sbjct: 421 KEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWPKCIFPASLDGIVLRCEDTSK 480

Query: 446 NDVIPV 451
           NDVIPV
Sbjct: 481 NDVIPV 486

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526298|ref|XP_003531755.1| PREDICTED: uncharacterized membrane protein At1g16860-like [Glycine max]

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/486 (77%), Positives = 414/486 (85%), Gaps = 36/486 (7%)

Query: 1   MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK 60
           MGSR PSH+LSNGLYVSGRPEQPKERTPTM+S A+PYTGGDIKKSGELGKMFDIPVDGSK
Sbjct: 1   MGSRIPSHKLSNGLYVSGRPEQPKERTPTMTSTAVPYTGGDIKKSGELGKMFDIPVDGSK 60

Query: 61  SRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRASYSTSGPVSSGVTSGSASLKKSNSG 120
           SRKSGPI  APSRTGSFGGA SHSGPI PNAA+RA+Y+TSGP++SG  +GS S+KKSNSG
Sbjct: 61  SRKSGPITGAPSRTGSFGGAGSHSGPIQPNAAARAAYTTSGPMTSGGMAGSTSMKKSNSG 120

Query: 121 PLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKV 180
           PLNKHGEP+KKSSGPQSGGVTP GRQNSGPLAP LPTTGLITSGPISS PLNSSGAPRKV
Sbjct: 121 PLNKHGEPVKKSSGPQSGGVTPVGRQNSGPLAPVLPTTGLITSGPISSGPLNSSGAPRKV 180

Query: 181 SGPLDSMGSMKIP-SSVPHNQAITVLSQDEDFDFKRNFPKPI------------------ 221
           SGPL++ GSMK+  S+  HNQA+TVLSQ +D  F+RNFPK +                  
Sbjct: 181 SGPLEATGSMKLQGSAAVHNQAVTVLSQGDD-SFRRNFPKAVLWLLILLFVMGFIAGGFI 239

Query: 222 ----------------FCCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISG 265
                           F  VAA F WNT+WGR++I+ ++A YPD+ELR AKNGQFVK+SG
Sbjct: 240 LGAVHNAILLIVVVVLFGLVAASFTWNTYWGRRSIMGFVAHYPDSELRTAKNGQFVKVSG 299

Query: 266 VVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYI 325
           VVTCGNVPLESSFQKVPRC+YTSTSLYEYRGW SKAANPTHRR TWGLR LERR VDFYI
Sbjct: 300 VVTCGNVPLESSFQKVPRCVYTSTSLYEYRGWNSKAANPTHRRLTWGLRLLERRVVDFYI 359

Query: 326 SDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRL 385
           SDFQSGLRALVKTG+GARVTPYVDDS+ I+VNP KEEL PEF+RWL ERNLSSDDRIMRL
Sbjct: 360 SDFQSGLRALVKTGHGARVTPYVDDSVLINVNPTKEELPPEFLRWLEERNLSSDDRIMRL 419

Query: 386 KEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASK 445
           +EGYIKEGSTVSVMG+VQRN+NVLMIVPPP+PITTGCQW KCI PASL+GIVLRCEDASK
Sbjct: 420 EEGYIKEGSTVSVMGIVQRNENVLMIVPPPDPITTGCQWTKCIFPASLEGIVLRCEDASK 479

Query: 446 NDVIPV 451
           NDVIPV
Sbjct: 480 NDVIPV 485

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523113|ref|XP_003530186.1| PREDICTED: uncharacterized membrane protein At1g16860 [Glycine max]

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/486 (77%), Positives = 412/486 (84%), Gaps = 37/486 (7%)

Query: 1   MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK 60
           MGSR PSH+LSNGLYVSGRPEQPKERTPTM+S A+PYTGGDIKKSGELGKMFDIPVDGSK
Sbjct: 1   MGSRIPSHKLSNGLYVSGRPEQPKERTPTMTSTAVPYTGGDIKKSGELGKMFDIPVDGSK 60

Query: 61  SRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRASYSTSGPVSSGVTSGSASLKKSNSG 120
           SRKSGPI  APSRTGSFGGA SHSGP+ PNAA+RA+Y TSGP++SG  +GS S+KKSNSG
Sbjct: 61  SRKSGPITGAPSRTGSFGGAGSHSGPMQPNAAARATY-TSGPMTSGGMAGSTSMKKSNSG 119

Query: 121 PLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKV 180
           PLNKHGEP+KKSSGPQSGGVTP GRQNSGPLAP LPTTGLITSGPISS PLNSSGAPRKV
Sbjct: 120 PLNKHGEPVKKSSGPQSGGVTPVGRQNSGPLAPVLPTTGLITSGPISSGPLNSSGAPRKV 179

Query: 181 SGPLDSMGSMKIP-SSVPHNQAITVLSQDEDFDFKRNFPKPI------------------ 221
           SGPL++ GSMK+  S+  HNQA+TVLSQ +D  F+RNFPK +                  
Sbjct: 180 SGPLEATGSMKLQGSAAVHNQAVTVLSQGDD-SFRRNFPKAVLWLLILLFVMGFIAGGFI 238

Query: 222 ----------------FCCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISG 265
                           F  VAA F WNT+WGR++I+ ++  YPD+ELR AKNGQFVK+SG
Sbjct: 239 LGAVHNAILLIVVVILFGLVAASFTWNTYWGRRSIMGFVTHYPDSELRTAKNGQFVKVSG 298

Query: 266 VVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYI 325
           VVTCGNVPLESSFQKVPRC+YTSTSLYEYRGW SKAANP HRR TWGLR LERR VDFYI
Sbjct: 299 VVTCGNVPLESSFQKVPRCVYTSTSLYEYRGWDSKAANPAHRRLTWGLRLLERRVVDFYI 358

Query: 326 SDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRL 385
           SDFQSGLRALVKTG+GARVTPYVDDS+ I+VNP KEELSPEF+RWL ERNLSSDDRIMRL
Sbjct: 359 SDFQSGLRALVKTGHGARVTPYVDDSVLINVNPTKEELSPEFLRWLGERNLSSDDRIMRL 418

Query: 386 KEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASK 445
           +EGYIKEGSTVSVMGVVQRN+NVLMIVPPP+PITTGCQW KCI P+SL+GIVLRCEDASK
Sbjct: 419 EEGYIKEGSTVSVMGVVQRNENVLMIVPPPDPITTGCQWTKCIFPSSLEGIVLRCEDASK 478

Query: 446 NDVIPV 451
           NDVIPV
Sbjct: 479 NDVIPV 484

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526336|ref|XP_003531774.1| PREDICTED: uncharacterized membrane protein At1g16860-like [Glycine max]

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/486 (76%), Positives = 406/486 (83%), Gaps = 43/486 (8%)

Query: 1   MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK 60
           MGSRFPSHQLSNGLYVSGRPEQPKE+TPTMSSVAMPYTGGDIK+SGELGKMFDIP+DGSK
Sbjct: 1   MGSRFPSHQLSNGLYVSGRPEQPKEKTPTMSSVAMPYTGGDIKRSGELGKMFDIPMDGSK 60

Query: 61  SRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRASYSTSGPVSSGVTSGSASLKKSNSG 120
           SRKSGPI+NAPSRTGSF GAASHSGPIM NAA+R++Y TSG VS+G  S SAS+KK+NSG
Sbjct: 61  SRKSGPISNAPSRTGSFAGAASHSGPIMQNAAARSAYITSGNVSTGGMSASASMKKTNSG 120

Query: 121 PLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKV 180
           PLNKHGEP+KKSSGPQSGGVT   RQNSGP+ P LPTTGLITSGP     LNSSGAPRKV
Sbjct: 121 PLNKHGEPVKKSSGPQSGGVT---RQNSGPIPPVLPTTGLITSGP-----LNSSGAPRKV 172

Query: 181 SGPLDSMGSMKIPSS-VPHNQAITVLSQDEDFDFKRNFPKPI------------------ 221
           SG LDS GSMK  SS V HN A+T LS D+++ F+RNFPKPI                  
Sbjct: 173 SGQLDSTGSMKSHSSFVAHNPAVTTLSLDDEYSFRRNFPKPILWSVILIFVMGFIAGGFI 232

Query: 222 ----------------FCCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISG 265
                           F  VAALF WN+ +GRKAI+ +I+RYPDAELR AKNGQFVK+SG
Sbjct: 233 LGAVRNAILLIVVVILFGAVAALFTWNSCFGRKAIVGFISRYPDAELRTAKNGQFVKVSG 292

Query: 266 VVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYI 325
           VVTCGNVPLESSFQKVPRC+YTSTSLYEYRGW SKAANP HRRFTWGLR+ ER  VDFYI
Sbjct: 293 VVTCGNVPLESSFQKVPRCVYTSTSLYEYRGWDSKAANPKHRRFTWGLRAAERHVVDFYI 352

Query: 326 SDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRL 385
           SDFQSGLRALVKTGYGARVTPYVDDS+ IDVNP  +++SPEF+RWL ER LSSDDRIM+L
Sbjct: 353 SDFQSGLRALVKTGYGARVTPYVDDSVVIDVNPANKDMSPEFLRWLGERKLSSDDRIMQL 412

Query: 386 KEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASK 445
           KEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEP+TTGCQWAKCI PASL+GIVLRCED SK
Sbjct: 413 KEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPLTTGCQWAKCIFPASLEGIVLRCEDTSK 472

Query: 446 NDVIPV 451
            DVIPV
Sbjct: 473 IDVIPV 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521668|ref|XP_003529475.1| PREDICTED: uncharacterized membrane protein At1g16860-like [Glycine max]

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/486 (76%), Positives = 405/486 (83%), Gaps = 43/486 (8%)

Query: 1   MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK 60
           MGSRFPSHQLSNGLYVSGRPEQPKE+TPTMSSVAMPYTGGDIKKSGELGKMFDIP+DGSK
Sbjct: 1   MGSRFPSHQLSNGLYVSGRPEQPKEKTPTMSSVAMPYTGGDIKKSGELGKMFDIPMDGSK 60

Query: 61  SRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRASYSTSGPVSSGVTSGSASLKKSNSG 120
           SRKSGPINNAPSRTGSF GAASHSGPIM NAA+R+ Y TSG VS+G  S SAS+KK+NSG
Sbjct: 61  SRKSGPINNAPSRTGSFAGAASHSGPIMQNAAARSVYITSGNVSAGGMSASASMKKTNSG 120

Query: 121 PLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKV 180
           PLNKHGEP+KKSSGPQSGGVT   RQNSGP+ P LPTTGLITSGP     LNSSGAPRKV
Sbjct: 121 PLNKHGEPVKKSSGPQSGGVT---RQNSGPIPPVLPTTGLITSGP-----LNSSGAPRKV 172

Query: 181 SGPLDSMGSMK-IPSSVPHNQAITVLSQDEDFDFKRNFPKPI------------------ 221
           SG LDS GSMK + S V HN A+T LS D+++ F++NFPKPI                  
Sbjct: 173 SGQLDSTGSMKSLSSFVAHNPAVTTLSLDDEYSFRKNFPKPILWSVILIFVMGFIAGGFI 232

Query: 222 ----------------FCCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISG 265
                           F  VAALF WN+ +GRKAI+ +I+RYPDAELR AKNGQFVK+SG
Sbjct: 233 LGAVHNAILLIVVVILFGAVAALFTWNSCFGRKAIVGFISRYPDAELRTAKNGQFVKVSG 292

Query: 266 VVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYI 325
           VVTCGNVPLESSFQKVPRC+YTSTSLYEYRGW SKAANP HRRFTWGLR+ ER  VDFYI
Sbjct: 293 VVTCGNVPLESSFQKVPRCVYTSTSLYEYRGWDSKAANPKHRRFTWGLRAAERHVVDFYI 352

Query: 326 SDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRL 385
           SDFQSGLRALVKTGYGARVTPYVDDS+ IDVNP  +++SPEF+RWL ER LSSDDRIM+L
Sbjct: 353 SDFQSGLRALVKTGYGARVTPYVDDSIVIDVNPANKDMSPEFLRWLGERKLSSDDRIMQL 412

Query: 386 KEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASK 445
           KEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEP++TGCQWAKCI PASL+GIVLRCED SK
Sbjct: 413 KEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPLSTGCQWAKCIFPASLEGIVLRCEDTSK 472

Query: 446 NDVIPV 451
            DVIPV
Sbjct: 473 IDVIPV 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509912|gb|AFK43022.1| unknown [Lotus japonicus]

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/486 (75%), Positives = 401/486 (82%), Gaps = 38/486 (7%)

Query: 1   MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK 60
           M SR PSHQLSNGLYVSGRPEQPKERTPT +S A+PYTGGDIK+SGELGKMFDIP DGSK
Sbjct: 1   MASRIPSHQLSNGLYVSGRPEQPKERTPTKTSTAVPYTGGDIKRSGELGKMFDIPTDGSK 60

Query: 61  SRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRASYSTSGPVSSGVTSGSASLKKSNSG 120
           SRKSGP+  APSRTGSFGGA SHSGPI PNAA+RA+Y+TSGP++SG   GS S KKSNSG
Sbjct: 61  SRKSGPLTGAPSRTGSFGGAGSHSGPIQPNAAARAAYTTSGPMTSGGMPGSTSTKKSNSG 120

Query: 121 PLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKV 180
           PLNKHGEPLKKSSGPQSGGVT    QNSGPLAP LPTTGLITSGPISS PLNSSGAPRKV
Sbjct: 121 PLNKHGEPLKKSSGPQSGGVTC---QNSGPLAPILPTTGLITSGPISSGPLNSSGAPRKV 177

Query: 181 SGPLDSMGSMKIP-SSVPHNQAITVLSQDEDFDFKRNFPKPIFCCV-------------- 225
           SGPL++ GSMK+  S+  HNQA+TVLSQD ++ F+RNFPK +   +              
Sbjct: 178 SGPLETTGSMKLQGSAAVHNQAVTVLSQDNEYSFRRNFPKAMLWLLILLFVMGFIAGGFI 237

Query: 226 --------------------AALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISG 265
                               AA F WNT+WGR+AI+ +I  YPD+ELR AKNGQFVK SG
Sbjct: 238 LGAVHNAILLVVVVVLFGLVAASFTWNTYWGRRAIMGFITHYPDSELRTAKNGQFVKASG 297

Query: 266 VVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYI 325
           VVTCGNVPLESSFQK+PRC+YTSTSLYEYRGW SKAANPTHR+FTWGLR LERR VDFYI
Sbjct: 298 VVTCGNVPLESSFQKIPRCVYTSTSLYEYRGWDSKAANPTHRQFTWGLRYLERRLVDFYI 357

Query: 326 SDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRL 385
           SDFQSGLRALVKTG+GARVTPYVDDS+ I VNP KEELSPEF+RWL ERNLSSDDR MR 
Sbjct: 358 SDFQSGLRALVKTGHGARVTPYVDDSVLISVNPTKEELSPEFLRWLGERNLSSDDRTMRW 417

Query: 386 KEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASK 445
           +EGYIKEGSTVSVMGVVQRN+NVLMIVPPPEPIT GCQW KCI PASL+GIVLRCED SK
Sbjct: 418 EEGYIKEGSTVSVMGVVQRNENVLMIVPPPEPITMGCQWTKCIFPASLEGIVLRCEDMSK 477

Query: 446 NDVIPV 451
           NDVIPV
Sbjct: 478 NDVIPV 483

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445951|ref|XP_002264547.1| PREDICTED: uncharacterized membrane protein At1g16860 [Vitis vinifera] gi|147844463|emb|CAN82086.1| hypothetical protein VITISV_031055 [Vitis vinifera]

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/486 (75%), Positives = 403/486 (82%), Gaps = 40/486 (8%)

Query: 1   MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK 60
           MGSRFPSHQLSNGLYVSGRPEQPKER PTMSS AMPYTGGDIK+SGELGKMFDIPVDGS+
Sbjct: 1   MGSRFPSHQLSNGLYVSGRPEQPKERPPTMSSTAMPYTGGDIKRSGELGKMFDIPVDGSR 60

Query: 61  SRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRASYSTSGPVSSGVTSGSASLKKSNSG 120
           SRKSGPINNAPSRTGSFGGAASHSGPIM N+ +R      G VSS    GSAS+KK+NSG
Sbjct: 61  SRKSGPINNAPSRTGSFGGAASHSGPIMSNSINRP-----GSVSSAGIPGSASVKKTNSG 115

Query: 121 PLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKV 180
           PLN+HG+P+KKSSGPQ GG     RQNSGPLAP LPTTGLITSGPISS PLNSSGAPRKV
Sbjct: 116 PLNRHGDPVKKSSGPQPGGGNSVSRQNSGPLAPVLPTTGLITSGPISSGPLNSSGAPRKV 175

Query: 181 SGPLDSMGSMKI-PSSVPHNQAITVLSQDEDFDFKRNFPKPI------------------ 221
           SGPLDS GS+K+  +S+ HNQA+T LSQ++++ F R+FPKPI                  
Sbjct: 176 SGPLDSTGSLKLHAASIAHNQAVTNLSQEDEYSFHRSFPKPILWSMVLLFVMGFIAGGFI 235

Query: 222 ----------------FCCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISG 265
                           F  VAA+F WNT+WGR+AI  +IARYPDAELR A++GQFVK+SG
Sbjct: 236 LGAVHNPILLIVVVVLFGAVAAVFIWNTYWGRRAITGFIARYPDAELRTARDGQFVKVSG 295

Query: 266 VVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYI 325
           VVTCGNVPLESSFQ+VPRC+YTSTSLYEYRGW SKAANPTHRRFTWGLRSLER  VDFYI
Sbjct: 296 VVTCGNVPLESSFQRVPRCVYTSTSLYEYRGWDSKAANPTHRRFTWGLRSLERHVVDFYI 355

Query: 326 SDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRL 385
           SDFQSGLRALVKTGYGARVTPYVD+S+ +D+N    ++SPEFIRWL ERNLSSDDR+MRL
Sbjct: 356 SDFQSGLRALVKTGYGARVTPYVDESVVVDINQSNRDMSPEFIRWLGERNLSSDDRVMRL 415

Query: 386 KEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASK 445
           KEGYIKEGSTVSVMGVVQRN+NVLMIVPPPEP  TGCQWAKCI+PASL+GIVLRCED SK
Sbjct: 416 KEGYIKEGSTVSVMGVVQRNENVLMIVPPPEPFPTGCQWAKCILPASLEGIVLRCEDTSK 475

Query: 446 NDVIPV 451
            DVIPV
Sbjct: 476 IDVIPV 481

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449512773|ref|XP_004164135.1| PREDICTED: uncharacterized membrane protein At1g16860-like [Cucumis sativus]

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/485 (74%), Positives = 394/485 (81%), Gaps = 34/485 (7%)

Query: 1   MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK 60
           M SR PSHQLSNGLYVSGRPEQPKER PTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK
Sbjct: 1   MSSRIPSHQLSNGLYVSGRPEQPKERPPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK 60

Query: 61  SRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRASYSTSGPVSSGVTSGSASLKKSNSG 120
           S+KSGPI +   R+GSFGG ASHSGPIMPNA +R  Y+TSG + S   SGS SLKKSNSG
Sbjct: 61  SKKSGPITSGSLRSGSFGGVASHSGPIMPNATARTMYTTSGSLPSQGLSGSVSLKKSNSG 120

Query: 121 PLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKV 180
           PL+KHGEP+KK SGPQSGGVTP GRQNSGPL P LP TGLITSGPISS PLNSSGA RKV
Sbjct: 121 PLSKHGEPVKKLSGPQSGGVTPIGRQNSGPLPPVLPATGLITSGPISSGPLNSSGAQRKV 180

Query: 181 SGPLDSMGSMKIPSSVPHNQAITVLSQDEDFDFKRNFPKPI------------------- 221
           SGPL+SMGS+K+  S  H  A+T L+ D+D+ F +NFPK +                   
Sbjct: 181 SGPLESMGSIKLQGSAAHGHAVTTLTYDDDYSFAKNFPKIVLWSLILLFVMGFIAGGFIL 240

Query: 222 ---------------FCCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISGV 266
                          F  V  LF WNT+WGR+AI+ +I RYPD+ELR AKNGQFVK+SGV
Sbjct: 241 GAVHNAILLIVVVVLFAAVGTLFVWNTYWGRRAIMGFITRYPDSELRTAKNGQFVKVSGV 300

Query: 267 VTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYIS 326
           VTCGNVPLESSFQK+PRC+YTSTSLYEYRGW SKAANPTHRRFTWGLRSLER  VDFYIS
Sbjct: 301 VTCGNVPLESSFQKIPRCVYTSTSLYEYRGWSSKAANPTHRRFTWGLRSLERHVVDFYIS 360

Query: 327 DFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRLK 386
           DFQSGLRALVKTGYGARVTPYVDD + IDVNP  EELSP FIRWL ERNLSSD R+M LK
Sbjct: 361 DFQSGLRALVKTGYGARVTPYVDDPIVIDVNPLNEELSPNFIRWLGERNLSSDGRVMHLK 420

Query: 387 EGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASKN 446
           EGYIKEGSTVSVMGVVQRN+NVLMIVPPP+PI +GC+W+KCI PAS++GIVL+CED SKN
Sbjct: 421 EGYIKEGSTVSVMGVVQRNENVLMIVPPPDPIASGCEWSKCIFPASIEGIVLQCEDTSKN 480

Query: 447 DVIPV 451
           DVIPV
Sbjct: 481 DVIPV 485

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	451
TAIR|locus:2015646	474	AT1G16860 [Arabidopsis thalian	0.512	0.487	0.735	1e-169
TAIR|locus:2037533	468	AT1G78880 "AT1G78880" [Arabido	0.512	0.493	0.740	6.9e-145
TAIR|locus:2132075	445	AT4G22290 "AT4G22290" [Arabido	0.955	0.968	0.462	1.3e-98

TAIR|locus:2015646 AT1G16860 [Arabidopsis thaliana (taxid:3702)]

 Score = 925 (330.7 bits), Expect = 1.0e-169, Sum P(2) = 1.0e-169
 Identities = 170/231 (73%), Positives = 193/231 (83%)

Query:   221 IFCCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISGVVTCGNVPLESSFQK 280
             +F  VAALF WN  WGR+ I  +IARYPDA+LR AKNGQ VK++GVVTCGNVPLESSF +
Sbjct:   244 LFTVVAALFIWNICWGRRGITDFIARYPDADLRTAKNGQHVKVTGVVTCGNVPLESSFHR 303

Query:   281 VPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGY 340
             VPRC+YTST LYEYRGWGSK AN +HR FTWGLRS ER  VDFYISDFQSGLRALVKTG 
Sbjct:   304 VPRCVYTSTCLYEYRGWGSKPANSSHRHFTWGLRSSERHVVDFYISDFQSGLRALVKTGS 363

Query:   341 GARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRLKEGYIKEGSTVSVMG 400
             GA+VTP VDDS+ ID   G E++SP+F+RWL ++NL+SDDRIMRLKEGYIKEGSTVSV+G
Sbjct:   364 GAKVTPLVDDSVVIDFKQGSEQVSPDFVRWLGKKNLTSDDRIMRLKEGYIKEGSTVSVIG 423

Query:   401 VVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASKNDVIPV 451
             VVQRNDNVLMIVP  EP+  G QW +C  P SL+GIVLRCED+S  D IPV
Sbjct:   424 VVQRNDNVLMIVPSSEPLAAGWQWRRCTFPTSLEGIVLRCEDSSNVDAIPV 474

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2037533 AT1G78880 "AT1G78880" [Arabidopsis thaliana (taxid:3702)]

 Score = 926 (331.0 bits), Expect = 6.9e-145, Sum P(2) = 6.9e-145
 Identities = 171/231 (74%), Positives = 195/231 (84%)

Query:   221 IFCCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISGVVTCGNVPLESSFQK 280
             +F  VAALF WN    R+ I  +IARYPDA+LR AKNGQ+VK++GVVTCGNVPLESSF +
Sbjct:   238 LFTVVAALFIWNISCERRGITDFIARYPDADLRTAKNGQYVKVTGVVTCGNVPLESSFHR 297

Query:   281 VPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGY 340
             VPRC+YTST LYEYRGWGSK AN +HRRFTWGLRS ER  VDFYISDFQSGLRALVKTG 
Sbjct:   298 VPRCVYTSTCLYEYRGWGSKPANASHRRFTWGLRSAERHVVDFYISDFQSGLRALVKTGN 357

Query:   341 GARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRLKEGYIKEGSTVSVMG 400
             GA+VTP VDDS+ ID  PG E+ SP+F+RWL ++NL++DDRIMRLKEGYIKEGSTVSV+G
Sbjct:   358 GAKVTPLVDDSVVIDFKPGNEQASPDFVRWLGKKNLTNDDRIMRLKEGYIKEGSTVSVIG 417

Query:   401 VVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASKNDVIPV 451
             VVQRNDNVLMIVP  EP+  G QW+KC  PASL+GIVLRCED+S  D IPV
Sbjct:   418 VVQRNDNVLMIVPTTEPLAAGWQWSKCTFPASLEGIVLRCEDSSNVDAIPV 468

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2132075 AT4G22290 "AT4G22290" [Arabidopsis thaliana (taxid:3702)]

 Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
 Identities = 215/465 (46%), Positives = 280/465 (60%)

Query:     1 MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK 60
             M  R  SHQL NGLYVSG+ EQPKER PTM++ A+PYTGGDIKKSGELG+MFDI V  S 
Sbjct:     1 MAGRIQSHQLPNGLYVSGKLEQPKERPPTMAARAVPYTGGDIKKSGELGRMFDISVVDSA 60

Query:    61 SRKSGPINNAPSRTG--SFGGAASHSGPIMPNAASRXXXXXXXXXXXXXXXXXXXLKKSN 118
             S +  P    P   G  S GG +    P  P  +                         N
Sbjct:    61 SFQGPP----PLIVGGNSSGGTSRLQAP--PRVSGSSSNPNSGSVRSG----------PN 104

Query:   119 SGPLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLIT---SGPISSAPLNSSG 175
             SG + K   PL +   P +G +T     +SGP+      +G +    S   SS P   S 
Sbjct:   105 SGSVKKFSGPLSQLQ-P-TGLITSGSLGSSGPILSGSRRSGQLDHQLSNLASSKPKYGSS 162

Query:   176 APRKVSGPLDSMGSMKIPSSVPHNQAITVLSQDEDFDFKR-NFPKPIF--------CCVA 226
                    P+  +G  K+P ++     I          F      KP+         C   
Sbjct:   163 VTSLNVDPV-RVG-FKVPKAMVWAVLIVAAMGLLVGAFLTVAVKKPVVIAAVLAAVCPAI 220

Query:   227 ALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISGVVTCGNVPLESSFQKVPRCIY 286
              +  WN  W RK ++S+I +YPDAELR A +GQFVK++GVVTCG++PLESSFQ+ PRC+Y
Sbjct:   221 VVLVWNCVWRRKGLLSFIKKYPDAELRGAIDGQFVKVTGVVTCGSIPLESSFQRTPRCVY 280

Query:   287 TSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGYGARVTP 346
              ST LYEY+G+G K+ANP HR F+WG R  E+   DFYISDFQSGLRALVK GYG++V+P
Sbjct:   281 VSTELYEYKGFGGKSANPKHRCFSWGSRHAEKYVSDFYISDFQSGLRALVKAGYGSKVSP 340

Query:   347 YVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRLKEGYIKEGSTVSVMGVVQRND 406
             +V  +   +V    ++LSP F++WL++RNLS+DDR+MRLKEGYIKEGSTVSVMG+V+R+D
Sbjct:   341 FVKPATVANVTTQNKDLSPSFLKWLSDRNLSADDRVMRLKEGYIKEGSTVSVMGMVRRHD 400

Query:   407 NVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASKNDVIPV 451
             NVLMIVPP E +++GC+W  C+ P   DG+++ C+D    DVIPV
Sbjct:   401 NVLMIVPPAEAVSSGCRWWHCLFPTYADGLIITCDDNQNADVIPV 445


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.133   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      451       432   0.00086  118 3  11 23  0.45    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  262 KB (2139 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  40.08u 0.09s 40.17t   Elapsed:  00:00:02
  Total cpu time:  40.08u 0.09s 40.17t   Elapsed:  00:00:02
  Start:  Mon May 20 19:29:30 2013   End:  Mon May 20 19:29:32 2013

GO:0004221 "ubiquitin thiolesterase activity" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FZ45	Y1686_ARATH	No assigned EC number	0.6714	0.9711	0.9240	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00080044 hypothetical protein (485 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	451
PF12483	160	GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 Thi	97.8
cd06094	89	RP_Saci_like RP_Saci_like, retropepsin family. Ret	80.75

>PF12483 GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 150 and 163 amino acids in length

Probab=97.80  E-value=0.00015  Score=64.63  Aligned_cols=101  Identities=21%  Similarity=0.288  Sum_probs=67.0

Q ss_pred             cccceeeeeeeeceEEeecCCceeEEE-EeCCCCeeeEeeecceeEecCCCCCCCCHHHHHHHHhcC-CCCCCceeEEee
Q 013042          310 TWGLRSLERRAVDFYISDFQSGLRALV-KTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERN-LSSDDRIMRLKE  387 (451)
Q Consensus       310 ~Wglr~~Er~~~DFYISDfqSGlRALV-KaG~GakVtp~V~es~vvd~g~~~kdlS~~f~~WL~erN-LSsd~r~mRlkE  387 (451)
                      .|.+.+..+..+.||+.|  ..-|.+| ....++.+.--.+-+.....   .......+..|+...- +.  .+=.||+|
T Consensus        18 ~~~~v~~~~~~vPF~L~D--~tg~v~V~~~p~~a~l~l~~v~~~f~p~---~~~~~~~~~~~~~~~~~~~--~~G~r~~E   90 (160)
T PF12483_consen   18 SWRTVSSGTSEVPFYLED--GTGRVRVVDDPEGAELDLETVYDRFEPS---PSSPPDGLFGFFSGERELE--PKGYRYTE   90 (160)
T ss_pred             cEEEEEcceeEcCEEEEC--CceEEEEecCcccCccceeeEEEEeEEC---CCCccceeeeeeccceecc--ccccEEEE
Confidence            499999999999999999  4455555 56666655322222221111   1133333444333222 11  33479999


Q ss_pred             eeeeeCCeEEEEEEEE-ecCceeEEeCCCCc
Q 013042          388 GYIKEGSTVSVMGVVQ-RNDNVLMIVPPPEP  417 (451)
Q Consensus       388 GyIkEGstVSVmGvvq-r~~~~lmIvpP~e~  417 (451)
                      -.|.+|++|.|+|.+. ..|..++|-+|.+.
T Consensus        91 ~~L~~G~~ltvvGe~~~~~~g~~~i~~p~~g  121 (160)
T PF12483_consen   91 EILPVGTPLTVVGELVRDGDGNLVIQPPKDG  121 (160)
T ss_pred             EEcCCCCEEEEEEEEEEcCCCcEEEeCCCCC
Confidence            9999999999999995 55568999999986

There is a single completely conserved residue E that may be functionally important. GIDE is an E3 ubiquitin ligase which is involved in inducing apoptosis. ; GO: 0016881 acid-amino acid ligase activity

>cd06094 RP_Saci_like RP_Saci_like, retropepsin family

Probab=80.75  E-value=1.4  Score=37.98  Aligned_cols=24  Identities=46%  Similarity=0.616  Sum_probs=20.7

Q ss_pred             eEEeecCCceeEEEEeCCCCeeeE
Q 013042          323 FYISDFQSGLRALVKTGYGARVTP  346 (451)
Q Consensus       323 FYISDfqSGlRALVKaG~GakVtp  346 (451)
                      |||.|++||+|+||-||..-.|-|
T Consensus         1 l~v~D~~s~~~fLVDTGA~vSviP   24 (89)
T cd06094           1 LHVRDRTSGLRFLVDTGAAVSVLP   24 (89)
T ss_pred             CeeEECCCCcEEEEeCCCceEeec
Confidence            799999999999999998755554

Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	451
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 49/304 (16%), Positives = 88/304 (28%), Gaps = 96/304 (31%)

Query: 184 LD-SMGSMKIPSSVPHNQAI-TVLSQD--EDFDFK--RNFPKPIFCCVAALFGWNTFWGR 237
           +D   G  +        + I +V      ++FD K  ++ PK I                
Sbjct: 7   MDFETGEHQY-----QYKDILSVFEDAFVDNFDCKDVQDMPKSIL--------------S 47

Query: 238 KAIISYIARYPDAELR----------NAKNG--QFVKISGVVTCGNVP-LESSFQKVPRC 284
           K  I +I    DA               +    +FV     V   N   L S  +   R 
Sbjct: 48  KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV---EEVLRINYKFLMSPIKTEQRQ 104

Query: 285 IYTSTSLYEY---RGWGSKAANPTHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGYG 341
               T +Y     R +     N    +      ++ R          +  L  L      
Sbjct: 105 PSMMTRMYIEQRDRLYND---NQVFAK-----YNVSRLQP---YLKLRQALLEL------ 147

Query: 342 ARVTPYV---------DDSLAIDV-NPGKEELSPEF-IRWLAERNLSSDDRIM-RLKEGY 389
            R    V            +A+DV    K +   +F I WL  +N +S + ++  L++  
Sbjct: 148 -RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 390 IKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIV-----PASLDGIVLRCEDAS 444
            +     +      R+D+          I +     + ++        L  +VL      
Sbjct: 207 YQIDPNWT-----SRSDH---SSNIKLRIHSIQAELRRLLKSKPYENCL--LVLL----- 251

Query: 445 KNDV 448
             +V
Sbjct: 252 --NV 253

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 7e-04
 Identities = 30/244 (12%), Positives = 67/244 (27%), Gaps = 79/244 (32%)

Query: 184 LDSM-GSMKIPSSVPHNQAITVLSQDEDFDFKRNFPKPIFCCVAALFGWNTFWGRKAIIS 242
           +D + GS K  + V    A+ V      +  +      IF        W           
Sbjct: 155 IDGVLGSGK--TWV----ALDVCL---SYKVQCKMDFKIF--------WLNL-KNC---- 192

Query: 243 YIARYPDAELRNAKNGQFVKISGVVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAA 302
                P+  L   +      +   +             +        S+           
Sbjct: 193 ---NSPETVLEMLQK-----LLYQIDPNWTSRSDHSSNIK---LRIHSIQAEL------- 234

Query: 303 NPTHRRF--TWGL-RSL-------ERRAVD-FYISDFQSGLRALVKTGYGARVTPYVDDS 351
               RR   +      L         +A + F   +     + L+ T +  +VT ++  +
Sbjct: 235 ----RRLLKSKPYENCLLVLLNVQNAKAWNAF---NLSC--KILLTTRF-KQVTDFLSAA 284

Query: 352 LA--IDVNPGKEELSPE-----FIRWLAERNLSSDDRIMRLKEGYIKEGS--TVSVMGVV 402
               I ++     L+P+      +++L   +    D    L    +   +   +S++   
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYL---DCRPQD----LPR-EVLTTNPRRLSIIAES 336

Query: 403 QRND 406
            R+ 
Sbjct: 337 IRDG 340

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00