Query 013044
Match_columns 451
No_of_seqs 384 out of 2049
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 03:10:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.7E-40 5.7E-45 321.9 28.6 385 44-449 4-414 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 2.9E-35 9.9E-40 282.0 20.9 357 48-449 24-390 (451)
3 3o7q_A L-fucose-proton symport 100.0 5.7E-34 2E-38 271.9 25.2 330 53-447 27-388 (438)
4 2gfp_A EMRD, multidrug resista 100.0 1.7E-32 5.8E-37 256.2 8.5 328 56-449 4-334 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 2.7E-29 9.2E-34 243.2 20.3 346 89-448 49-429 (491)
6 2xut_A Proton/peptide symporte 99.9 4E-24 1.4E-28 208.6 14.4 142 91-233 51-197 (524)
7 2cfq_A Lactose permease; trans 99.9 6.7E-26 2.3E-30 214.3 1.1 317 72-446 27-353 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 9.8E-14 3.4E-18 132.3 16.8 145 89-234 283-433 (451)
9 2cfq_A Lactose permease; trans 99.4 2.3E-13 7.9E-18 128.3 10.6 146 92-238 257-404 (417)
10 3o7q_A L-fucose-proton symport 99.4 7.2E-13 2.5E-17 125.8 10.3 141 89-233 290-431 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.4 3.3E-12 1.1E-16 123.2 11.7 142 90-233 315-470 (491)
12 4gc0_A D-xylose-proton symport 99.3 2.7E-12 9.2E-17 123.8 8.1 150 89-238 307-467 (491)
13 2gfp_A EMRD, multidrug resista 99.0 1.4E-10 5E-15 107.4 3.2 129 89-221 230-363 (375)
14 2xut_A Proton/peptide symporte 98.8 8.4E-09 2.9E-13 100.1 8.2 138 95-232 336-500 (524)
15 2g9p_A Antimicrobial peptide l 65.8 3.5 0.00012 19.4 1.5 14 113-126 2-15 (26)
16 4dve_A Biotin transporter BIOY 30.3 1.2E+02 0.0041 24.2 6.1 25 100-124 99-123 (198)
17 3arc_T Photosystem II reaction 23.5 66 0.0022 16.9 2.2 11 229-239 18-28 (32)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.7e-40 Score=321.92 Aligned_cols=385 Identities=30% Similarity=0.498 Sum_probs=302.3
Q ss_pred CccchHHHHHHHHHHHhhhhhcccccccccccccccCCCCCC-cccccCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 013044 44 NYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSG-ISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILG 122 (451)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G 122 (451)
+++.+..+.+.++.+++.+++|||.++++..+|.+.++.... +...+.+..+.|++.+++.+|..+|++++|+++||+|
T Consensus 4 ~~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~G 83 (491)
T 4gc0_A 4 QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG 83 (491)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC
T ss_pred CcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667777777788999999999999999998876542111 0001345677899999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHH------------------HhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCCcchH
Q 013044 123 RRRELILAALLYLVGALVTA------------------LAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQL 184 (451)
Q Consensus 123 rr~~~~~~~~l~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 184 (451)
||++++++.+++.+++++++ +++|+++++++|+++|+|.|+..+...++++|+.|+++|++.
T Consensus 84 Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~ 163 (491)
T 4gc0_A 84 RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKL 163 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhh
Confidence 99999999999999999999 478999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccc-------ccchhHHHhhhHHHHHHHHHHhhcccCchHHHHHhhccccCCccchHH
Q 013044 185 ISLKEFFIVLGMVGGYGIGSLLVDL-------VAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRE 257 (451)
Q Consensus 185 ~~~~~~~~~~G~~~g~~l~~~l~~~-------~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 257 (451)
.++.+.+..+|.++++.++..+... ..+||+.+.+..+..++.++..+++||+|+|+..++ +.+
T Consensus 164 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~---------~~~ 234 (491)
T 4gc0_A 164 VSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRG---------KQE 234 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTT---------CHH
T ss_pred HHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcC---------chh
Confidence 9999999999999999988876542 126899999999998888888899999999999887 667
Q ss_pred HHHHHHHHHhCCCCCCCCchhHHHHHHhhcccccccccchhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH
Q 013044 258 SAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS 337 (451)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (451)
++.+.+++..+....+++ ..+..+..+ ++++....... ...++..+......+.++.+.+.+.+|.+.+.+.
T Consensus 235 ~a~~~l~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (491)
T 4gc0_A 235 QAEGILRKIMGNTLATQA---VQEIKHSLD--HGRKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT 306 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhHHHhcCCchhHHH---HHHHHHHHH--hhhhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh
Confidence 777766665432211110 000000000 00111111112 2235566667777788888888999999999998
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhchhHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHhhc
Q 013044 338 AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQ 417 (451)
Q Consensus 338 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (451)
.+. +...........++..+++.++.+++.||+|||+.++.+.....++++.++..... ....+..++..+++..+++
T Consensus 307 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~ 384 (491)
T 4gc0_A 307 LGA-STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-QAPGIVALLSMLFYVAAFA 384 (491)
T ss_dssp SSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHH
T ss_pred cCC-CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHH
Confidence 888 77778888888999999999999999999999999999888888887777655443 2334455556666677777
Q ss_pred cccCCCceeeeeeecchhhhhhhhhhheeeee
Q 013044 418 VIKNFNPSKIYHFRIFFFEMTRIVCSIYCAKL 449 (451)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (451)
. ++.|+.+.+.+|++|++.|+++.++++++
T Consensus 385 ~--~~~~~~~~~~~E~fPt~~R~~~~g~~~~~ 414 (491)
T 4gc0_A 385 M--SWGPVCWVLLSEIFPNAIRGKALAIAVAA 414 (491)
T ss_dssp T--TTTHHHHHHHHHSSCTTTHHHHHHHHHHH
T ss_pred h--HHHHHHHHHHHHhCCHhHHHHHHHHHHHH
Confidence 7 78899999999999999999999987654
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.9e-35 Score=281.99 Aligned_cols=357 Identities=13% Similarity=0.022 Sum_probs=264.5
Q ss_pred hHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCcccccCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHH
Q 013044 48 SAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRREL 127 (451)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~ 127 (451)
+..+..+...+++.+..+++...+.+.+|.+.++ + .+..+.|++.+++.++..++++++|+++||+|||+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l 95 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-------G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL 95 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-------T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH
Confidence 3445566777788888888989999999999988 8 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHHHh
Q 013044 128 ILAALLYLVGALVTAL----APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIG 203 (451)
Q Consensus 128 ~~~~~l~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~ 203 (451)
+++.++.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 96 PAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccc-hhHHHhhhHHHHHH-HHHHhhcccCchHHHHHhhccccCCccchHHHHHHHHHHHhCCCCCCCCchhHHH
Q 013044 204 SLLVDLVAG-WRYMYGASTPLAVI-MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDE 281 (451)
Q Consensus 204 ~~l~~~~~~-wr~~f~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (451)
+.+.+.. + ||+.|++.+++.++ .++..+++||+|+....++ +.+.....++ +.++
T Consensus 176 ~~l~~~~-g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-------------------~~~~ 232 (451)
T 1pw4_A 176 LLGMAWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP---IEEYKNDYPD-------------------DYNE 232 (451)
T ss_dssp HHHHHHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS---CTTTCCC--------------------------
T ss_pred HHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCC---hhhhcccccc-------------------cchh
Confidence 9988776 7 99999999988877 4455567888775311100 0000000000 0000
Q ss_pred HHHhhcccccccccchhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHH
Q 013044 282 ILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIM 360 (451)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~ 360 (451)
..++....++...+++++++..+...+ ..+...........+.|.++++ .|+ +..+.+.......++.+++
T Consensus 233 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~ 304 (451)
T 1pw4_A 233 ---KAEQELTAKQIFMQYVLPNKLLWYIAI----ANVFVYLLRYGILDWSPTYLKEVKHF-ALDKSSWAYFLYEYAGIPG 304 (451)
T ss_dssp ---------CCTHHHHHHTSSCHHHHHHHH----HHHHHHHHHHHHHHHHHHHBTTBSCC-CHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhcccccccchHHHHHcCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHH
Confidence 000000111111345555433333322 2233333445677788888877 688 8899999999999999999
Q ss_pred HHHHHHHhhhc--CCchhhhchhHHHH-HHHHHHHHhhhccCCcchHHHHHHHHHHHhhccccCCCceeeeeeecchhhh
Q 013044 361 TGLAVLVVERL--GRRPLLLGGVSGIV-ISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQVIKNFNPSKIYHFRIFFFEM 437 (451)
Q Consensus 361 ~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (451)
.++.+++.||+ +||+.+..+..+.. ++.+++. .....+.+...+..++.+.+.+. ..+....+..|..|++
T Consensus 305 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~ 378 (451)
T 1pw4_A 305 TLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW---MNPAGNPTVDMICMIVIGFLIYG---PVMLIGLHALELAPKK 378 (451)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT---SCCTTCHHHHHHHHHHHHHHHTH---HHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH---HhcccCHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHhchh
Confidence 99999999999 99988777665554 4333221 11122444444444454444443 4555567889999999
Q ss_pred hhhhhhheeeee
Q 013044 438 TRIVCSIYCAKL 449 (451)
Q Consensus 438 ~~~~~~~~~~~~ 449 (451)
.|+++.++.+.+
T Consensus 379 ~~g~~~~~~~~~ 390 (451)
T 1pw4_A 379 AAGTAAGFTGLF 390 (451)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHHHHHH
Confidence 999999887654
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=5.7e-34 Score=271.94 Aligned_cols=330 Identities=16% Similarity=0.144 Sum_probs=254.1
Q ss_pred HHHHHHHhhhhhcccccccccccccccCCCCCCcccccCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q 013044 53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAAL 132 (451)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 132 (451)
.+..+++..+..+++....++.+|.+.++ +|++..+.|++.+++.++..++++++|+++||+|||++++++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~ 99 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF 99 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHH
Confidence 33455566677778888889999999888 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH---HHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHHHhhhhc-c
Q 013044 133 LYLVGALVT---ALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV-D 208 (451)
Q Consensus 133 l~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~-~ 208 (451)
+.+++.+++ ++++|++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+. +
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 179 (438)
T 3o7q_A 100 LYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS 179 (438)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999 888999999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred cccc------------------------hhHHHhhhHHHHHHHHHHhhc--ccCchHHHHHhhccccCCccchHHHHHHH
Q 013044 209 LVAG------------------------WRYMYGASTPLAVIMGMGMWW--LPASPRWLLLCAMKRKGDMQDLRESAISC 262 (451)
Q Consensus 209 ~~~~------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (451)
.... ||+.|++.+++.++..+..++ .||+++. . +.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~---~~~----------- 241 (438)
T 3o7q_A 180 NVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----N---HSD----------- 241 (438)
T ss_dssp SSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT----C---CCC-----------
T ss_pred ccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc----c---ccc-----------
Confidence 5423 999998888777664444433 3444320 0 000
Q ss_pred HHHHhCCCCCCCCchhHHHHHHhhcccccccccchhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHH-HHHc-CC
Q 013044 263 LCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASI-LQSA-GF 340 (451)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~ 340 (451)
+++++.+.+++++++++..+...+...+... .......|.|.+ +++. |+
T Consensus 242 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~ 292 (438)
T 3o7q_A 242 -------------------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGM 292 (438)
T ss_dssp -------------------------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHSTTC
T ss_pred -------------------------ccccchhhhHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccCCc
Confidence 0011122345667776655554444333333 234556677777 7776 88
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhchhHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHhhcccc
Q 013044 341 SAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQVIK 420 (451)
Q Consensus 341 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (451)
+..+++.......++.+++.++.+++.||++||+.+..+.++..++.+++.. .++.+ ..+..++.+.+.+.
T Consensus 293 -~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~g~~~~~-- 363 (438)
T 3o7q_A 293 -TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF-----AGGHV-GLIALTLCSAFMSI-- 363 (438)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CCHHH-HHHHHHHHHHHHTT--
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH-----cCCcH-HHHHHHHHHHHHHH--
Confidence 8899999999999999999999999999999999998888777776655443 12333 33344555555554
Q ss_pred CCCceeeeeeecchhhhhhhhhhheee
Q 013044 421 NFNPSKIYHFRIFFFEMTRIVCSIYCA 447 (451)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (451)
..|....+..|..|++ ++.+.++..
T Consensus 364 -~~~~~~~~~~~~~~~~-~~~~~~~~~ 388 (438)
T 3o7q_A 364 -QYPTIFSLGIKNLGQD-TKYGSSFIV 388 (438)
T ss_dssp -HHHHHHHHHHSSCGGG-HHHHHHHHH
T ss_pred -HHHHHHHHHHhhcccc-ccchhhHHH
Confidence 5667777766777766 666666543
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.97 E-value=1.7e-32 Score=256.22 Aligned_cols=328 Identities=13% Similarity=0.089 Sum_probs=248.3
Q ss_pred HHHHhhhhhcccccccccccccccCCCCCCcccccCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHH
Q 013044 56 FPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL 135 (451)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~ 135 (451)
.+++..+..+++.....+.+|.+.++ +|.++.+.+++.+++.++..+++++.|+++||+|||++++.+.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 76 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD-------LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM 76 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-------SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 44556667777888888999999888 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHHHhhhhcccccchhH
Q 013044 136 VGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRY 215 (451)
Q Consensus 136 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~ 215 (451)
++.++.++++|++.++++|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++++.+.. +||+
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~ 155 (375)
T 2gfp_A 77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWRA 155 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887 9999
Q ss_pred HHhhhHHHHHHHHH-HhhcccCchHHHHHhhccccCCccchHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhcccccccc
Q 013044 216 MYGASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKE 294 (451)
Q Consensus 216 ~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (451)
.|++.+++.++..+ ..+++||+++.. + ++++.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------------------------------------------~~~~~~ 189 (375)
T 2gfp_A 156 CYLFLLVLCAGVTFSMARWMPETRPVD---A-------------------------------------------PRTRLL 189 (375)
T ss_dssp HHHHHHHHHHHHHCCCCCSSCCCSTTT---C-------------------------------------------CCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcccCCCC---c-------------------------------------------ccccHH
Confidence 99999888877554 555677765410 0 001122
Q ss_pred cchhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 013044 295 VSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGR 373 (451)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 373 (451)
.+++++++++..+...+...+. .........+.|.++++ .|. +..+.+.......++.+++.++.+++.||.++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 190 TSYKTLFGNSGFNCYLLMLIGG----LAGIAAFEACSGVLMGAVLGL-SSMTVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp TCSTHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCSCSSHHHHHH-HHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHhcCcchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666655444433333222 22334555666666655 677 88889999999999999999999999999887
Q ss_pred chhhhchhHH-HHHHHHHHHHhhhccCCcchHHHHHHHHHHHhhccccCCCceeeeeeecchhhhhhhhhhheeeee
Q 013044 374 RPLLLGGVSG-IVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQVIKNFNPSKIYHFRIFFFEMTRIVCSIYCAKL 449 (451)
Q Consensus 374 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (451)
+ ...+... ...+...+.... ...++.+...+..++.+.+.+. ..+....+..|..| +.|+++.++.+..
T Consensus 265 ~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~g~~~~~---~~~~~~~~~~~~~p-~~~g~~~g~~~~~ 334 (375)
T 2gfp_A 265 L--MWQSVICCLLAGLLMWIPDW-FGVMNVWTLLVPAALFFFGAGM---LFPLATSGAMEPFP-FLAGTAGALVGGL 334 (375)
T ss_dssp H--HHHHHHHHHHTSSSSSHHHH-HHHHHHHHHHHHHHHHHHHHHH---TSSTTHHHHHTHHH-HHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHhh-hccccHHHHHHHHHHHHHHHHH---hhHHHHHHHHHhCC-cccchHHHHHHHH
Confidence 2 2222222 111111111110 0012334444555566666665 56777788888888 7899998876543
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=2.7e-29 Score=243.18 Aligned_cols=346 Identities=13% Similarity=0.008 Sum_probs=224.0
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHhhhhhh-hcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhh
Q 013044 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA 167 (451)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 167 (451)
+|.+..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+++.+++++++|++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 79999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCC--cchHHHHHHHHHHHHHHHHHHHhhhhcccccchhHHHhhhHHHHHHHHHHhhcc-cCchHHHHHh
Q 013044 168 APMYIAETAPTPM--RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL-PASPRWLLLC 244 (451)
Q Consensus 168 ~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~ 244 (451)
..++++|++|+++ |+.++++++.+.++|..++|.+++.+.+.. +||+.|++.++..++..+..++. ++..+
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~----- 202 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYFGGKKTLD----- 202 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhCccccc-----
Confidence 9999999999988 777888899999999999999999999887 99999999877766644443332 22110
Q ss_pred hccccCCccchHHHHHHHHHH---------------HhCCCCCCCCchhHHHHHH---h---hcccccccccchhhhhcc
Q 013044 245 AMKRKGDMQDLRESAISCLCR---------------LRGQSIGDSAPTEVDEILT---E---LSYVGEDKEVSLREVFHG 303 (451)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~ 303 (451)
++.++.+.+.+.++.++..+. ......+.+.......... . .....++++....+..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV 282 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 000111111122222222221 1111111111110000000 0 000000001000111111
Q ss_pred cchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhh----
Q 013044 304 KCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLL---- 378 (451)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~---- 378 (451)
...........+... .+.....+.+.+.++ .+. +....+.......++.+++.++.+++.||++||+...
T Consensus 283 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~ 357 (491)
T 4aps_A 283 VSYIPLFIAAVLFWA----IEEQGSVVLATFAAERVDS-SWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKF 357 (491)
T ss_dssp TTHHHHHHHHHHHHH----HHGGGGTHHHHHHHHSCCC-SSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHH
T ss_pred HHHHHHHHHHHHHHH----HHhhccHHHHHHHHHHhcc-CccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHH
Confidence 111122222222222 223344455666655 454 5567778888889999999999999999999987655
Q ss_pred -chhHHHHHHHHHHHHhhhc----cCCcchHHHHHHHHHHHhhccccCCCceeeeeeecchhhhhhhhhhheeee
Q 013044 379 -GGVSGIVISLFLLGSYYLF----LDDVPAVAVVALLLYVGCYQVIKNFNPSKIYHFRIFFFEMTRIVCSIYCAK 448 (451)
Q Consensus 379 -~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (451)
.+..+.+++.+++...... ...+.+...+..++.+.+.+. ..+....+..|..|++.|+++.++.+.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~---~~~~~~~~~~~~~p~~~~g~~~g~~~~ 429 (491)
T 4aps_A 358 AVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEML---ISPVGLSVTTKLAPKAFNSQMMSMWFL 429 (491)
T ss_dssp HHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHT---TTTHHHHHHHHHTTTTCSSSSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHH---HhHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5555555555544332111 112344455555555555554 567778899999999999999887654
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.91 E-value=4e-24 Score=208.59 Aligned_cols=142 Identities=18% Similarity=0.200 Sum_probs=131.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhhhh-cchHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhhhhhhH
Q 013044 91 LSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAP-DFIIMVVGRFVFGIGIGLAMHAA 168 (451)
Q Consensus 91 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~ 168 (451)
.+..+.|++.+++.++..++.++.|+++||+ |||+++.++.++.+++.+++++++ +++.++++|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHhccCCCCcchHHHH---HHHHHHHHHHHHHHHhhhhcccccchhHHHhhhHHHHHHHHHHhhc
Q 013044 169 PMYIAETAPTPMRGQLISL---KEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 233 (451)
Q Consensus 169 ~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 233 (451)
.+++.|++|+++|+++.+. ...+.++|.+++|.+++.+.+.. +||+.|++.+++.++..+..++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-GAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877666 89999999999999999998876 9999999988887765444433
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.91 E-value=6.7e-26 Score=214.28 Aligned_cols=317 Identities=15% Similarity=0.064 Sum_probs=189.8
Q ss_pred cccccc-ccCCCCCCcccccCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHH---HHHHHhhhH
Q 013044 72 SCATIS-IESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGA---LVTALAPDF 147 (451)
Q Consensus 72 ~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~---~~~~~~~~~ 147 (451)
.+.+|. +.++ +|.++.+.|++.+++.++..++++++|+++||+|||++++++..+.+++. ....+.+..
T Consensus 27 ~~~~~~~l~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (417)
T 2cfq_A 27 FPFFPIWLHDI-------NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99 (417)
T ss_dssp TTTHHHHHHTT-------TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444554 4555 79999999999999999999999999999999999999999888775532 211222221
Q ss_pred -HHHHHHHHHHHHHHhhhhhhHHHHHHhccCC--CCcchHHHHHHHHHHHHHHHHHHHhhhhcccccchhHHHhhhHHHH
Q 013044 148 -IIMVVGRFVFGIGIGLAMHAAPMYIAETAPT--PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLA 224 (451)
Q Consensus 148 -~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~ 224 (451)
..++..+.+.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++++.+. +||+.|++.++..
T Consensus 100 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~--~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFWLGSGCA 177 (417)
T ss_dssp HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH--CSHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh--chhHHHHHHHHHH
Confidence 1233445555554444333333334444332 3567777887777889999999999998763 8999999888776
Q ss_pred HHHHHHhhcccCchHHHHHhhccccCCccchHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhcccccccccchhhhhccc
Q 013044 225 VIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK 304 (451)
Q Consensus 225 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (451)
++..+..++.+|+++. +. ++.+. + .. +.++....+++++++++
T Consensus 178 ~~~~~~~~~~~~~~~~---~~--~~~~~--~---------------~~---------------~~~~~~~~~~~~~~~~~ 220 (417)
T 2cfq_A 178 LILAVLLFFAKTDAPS---SA--TVANA--V---------------GA---------------NHSAFSLKLALELFRQP 220 (417)
T ss_dssp TTHHHHSCSSCCCCSC---SS--CSSSS--S---------------SS---------------CCCCCCHHHHHHHTTCH
T ss_pred HHHHHHHHHcCccccc---cc--ccccc--c---------------cc---------------ccccccHHHHHHHhcCC
Confidence 5554444444443210 00 00000 0 00 00001112334566654
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHc-CCC--CchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhchh
Q 013044 305 CLKALIIGAGLVLFQQITGQPSVLYYAASILQSA-GFS--AASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGV 381 (451)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 381 (451)
..+...+...... ..+.....+.|.++.+. +.. +....+.......++.+++.++.+++.||+|||+.+..+.
T Consensus 221 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~ 296 (417)
T 2cfq_A 221 KLWFLSLYVIGVS----CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAG 296 (417)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 4433332211111 11223333455555442 210 2334567777778888999999999999999999888777
Q ss_pred HHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHhhccccCCCceeeeeeecchhhhhhhhhhhee
Q 013044 382 SGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQVIKNFNPSKIYHFRIFFFEMTRIVCSIYC 446 (451)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (451)
.+.+++.+.++. .++.+..++..++...+++. ..+..+.+.+|.+|++.|+++.++.
T Consensus 297 ~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~p~~~~g~~~g~~ 353 (417)
T 2cfq_A 297 TIMSVRIIGSSF-----ATSALEVVILKTLHMFEVPF---LLVGCFKYITSQFEVRFSATIYLVC 353 (417)
T ss_dssp HHHHHHHHHHTT-----CCSHHHHHHHTTHHHHHHHH---HHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 766665444321 22333333333333333332 2334467889999999999987763
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.55 E-value=9.8e-14 Score=132.27 Aligned_cols=145 Identities=16% Similarity=0.151 Sum_probs=128.7
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHhhhhhhh--cchHHHHHHHHHHH-HHHHHHHHh--hhHHHHHHHHHHHHHHHhh
Q 013044 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL--GRRRELILAALLYL-VGALVTALA--PDFIIMVVGRFVFGIGIGL 163 (451)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~~~l~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~~~ 163 (451)
+|.+..+.+++.+...++..++.++.|++.||+ |||+.+.++..+.. ++.++..+. .+.+.+.+..++.|++.+.
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 688999999999999999999999999999999 99999988887776 666666665 3678888889999999999
Q ss_pred hhhhHHHHHHhccCCCCcchHHHHHHHHHHH-HHHHHHHHhhhhcccccchhHHHhhhHHHHHHHHHHhhcc
Q 013044 164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVL-GMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL 234 (451)
Q Consensus 164 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 234 (451)
..+...+++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+.. +|+..|++.+++.++..+..+++
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999999999999987 89999999888887755555444
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.45 E-value=2.3e-13 Score=128.26 Aligned_cols=146 Identities=14% Similarity=0.136 Sum_probs=124.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHH
Q 013044 92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMY 171 (451)
Q Consensus 92 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 171 (451)
+....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888889999999999999999999999999998888888888888888888888888898888777888899
Q ss_pred HHhccCCCCcchHHHH-HHHHHHHHHHHHHHHhhhhcccccchhHHHhhhHHHHHHHHHH-hhcccCch
Q 013044 172 IAETAPTPMRGQLISL-KEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG-MWWLPASP 238 (451)
Q Consensus 172 i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~ 238 (451)
+.|.+|++.|+++.++ .+....+|.+++|.+++.+.+.. +++..|.+.+++.++..+. +++.||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 48888899999999999998876 8999999888887774444 44456543
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.40 E-value=7.2e-13 Score=125.78 Aligned_cols=141 Identities=9% Similarity=-0.017 Sum_probs=121.5
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhH
Q 013044 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA 168 (451)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 168 (451)
+|.+..+.++..+.+.++..++.++.|+++||+|||+++.++.++..++.++..+.++.+.++.. ++.|++.+...+..
T Consensus 290 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~ 368 (438)
T 3o7q_A 290 PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTI 368 (438)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999988887765554 88999999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHHHHHHHHHHHhhhhcccccc-hhHHHhhhHHHHHHHHHHhhc
Q 013044 169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAG-WRYMYGASTPLAVIMGMGMWW 233 (451)
Q Consensus 169 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~-wr~~f~~~~~~~~~~~~~~~~ 233 (451)
.++..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+.. | ++..|++.++..++..+..+.
T Consensus 369 ~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 369 FSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA-GNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp HHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH-TSSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999865 888888777 55699999999999999987 6 999998876665554443333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.35 E-value=3.3e-12 Score=123.16 Aligned_cols=142 Identities=11% Similarity=0.022 Sum_probs=116.9
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHH-----HHHHHHHHHHHHHHHhh---------hHHHHHHHHH
Q 013044 90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELI-----LAALLYLVGALVTALAP---------DFIIMVVGRF 155 (451)
Q Consensus 90 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-----~~~~l~~~~~~~~~~~~---------~~~~l~~~r~ 155 (451)
+.+..+.+++.+...++..++.++.|++.||+|||+... .+.++.+++.++..+.. +.+.++++-+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
T 4aps_A 315 DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWA 394 (491)
T ss_dssp CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHH
T ss_pred ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Confidence 444466788888889999999999999999999986655 77777777777776643 7788888899
Q ss_pred HHHHHHhhhhhhHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHHHhhhhcccccchhHHHhhhHHHHHHHHHHhhc
Q 013044 156 VFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 233 (451)
Q Consensus 156 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 233 (451)
+.|++.+...+...+++.|.+|+++|+++.++......+|..+++.+.+.+.+. ++.+.|.+.++++++..+..++
T Consensus 395 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 395 LVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK--SEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp HHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS--STTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988764 6777888888777774444433
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.31 E-value=2.7e-12 Score=123.77 Aligned_cols=150 Identities=15% Similarity=0.010 Sum_probs=110.4
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHH-HHHHHhh
Q 013044 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP----DFIIMVVGRFV-FGIGIGL 163 (451)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~----~~~~l~~~r~l-~G~~~~~ 163 (451)
.+.+............+...++.++.+.+.||+|||+.++.+.....++.+..+... +.+..++.-++ .+.....
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
T 4gc0_A 307 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS 386 (491)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH
Confidence 456667777777888889999999999999999999999999888888777665431 11222222222 2222233
Q ss_pred hhhhHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHHHhhhhcccc-----cchhHHHhhhHHHHHH-HHHHhhcccCc
Q 013044 164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV-----AGWRYMYGASTPLAVI-MGMGMWWLPAS 237 (451)
Q Consensus 164 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-----~~wr~~f~~~~~~~~~-~~~~~~~~~e~ 237 (451)
..+....+.+|.+|.+.|++++++......+|.++++.+...+.+.. .++.+.|++.++++++ .++.++++||+
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 45677889999999999999999999999999998888776654321 1566778888888777 55566789998
Q ss_pred h
Q 013044 238 P 238 (451)
Q Consensus 238 ~ 238 (451)
.
T Consensus 467 k 467 (491)
T 4gc0_A 467 K 467 (491)
T ss_dssp T
T ss_pred C
Confidence 5
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.98 E-value=1.4e-10 Score=107.44 Aligned_cols=129 Identities=16% Similarity=0.088 Sum_probs=104.7
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH-HHHHHH--HHHH--hhhHHHHHHHHHHHHHHHhh
Q 013044 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALL-YLVGAL--VTAL--APDFIIMVVGRFVFGIGIGL 163 (451)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l-~~~~~~--~~~~--~~~~~~l~~~r~l~G~~~~~ 163 (451)
+|.++.+.+++.+...++..++.++.+++.||+|++.. .+..+ ...+.. .... .++.+.+++..++.|++.+.
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 307 (375)
T 2gfp_A 230 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGM 307 (375)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHH--HHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHH
Confidence 68888999999999999999999999999999998332 23222 222222 2222 24778888889999999999
Q ss_pred hhhhHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHHHhhhhcccccchhHHHhhhH
Q 013044 164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGAST 221 (451)
Q Consensus 164 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~ 221 (451)
..+...+++.|..| ++|+++.++.+....+|..+++.+.+.+.+.. +|+..+++.+
T Consensus 308 ~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-~~~~~~~~~~ 363 (375)
T 2gfp_A 308 LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG-QGSLGLLMTL 363 (375)
T ss_dssp TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH-HHHHHHHHHH
T ss_pred hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccHHHHHHH
Confidence 99999999999998 89999999999999999999999999987765 7877776643
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.79 E-value=8.4e-09 Score=100.12 Aligned_cols=138 Identities=9% Similarity=0.051 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhh----hhhcc----hHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHH
Q 013044 95 EIGLITSGSLYGALIGSILAFNIA----DILGR----RRELILAALLYLVGALVTALA---------PDFIIMVVGRFVF 157 (451)
Q Consensus 95 ~~g~~~s~~~~~~~~~~~~~g~l~----dr~Gr----r~~~~~~~~l~~~~~~~~~~~---------~~~~~l~~~r~l~ 157 (451)
..+++.+...++..++.++.+++. ||.|+ ++.+.++.++.+++.++.++. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 456677777777777777777764 55543 356777888888887777664 3677888889999
Q ss_pred HHHHhhhhhhHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHHHhhhhcccc-cch---------hHHHhhhHHHHHHH
Q 013044 158 GIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV-AGW---------RYMYGASTPLAVIM 227 (451)
Q Consensus 158 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-~~w---------r~~f~~~~~~~~~~ 227 (451)
|++.+...+...+++.|..|+++|++++|+.+....+|..+++.+.+.+.+.. .+| +..|++.+++.++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987632 124 34466666666664
Q ss_pred HHHhh
Q 013044 228 GMGMW 232 (451)
Q Consensus 228 ~~~~~ 232 (451)
.+..+
T Consensus 496 ~~~~~ 500 (524)
T 2xut_A 496 AIVFA 500 (524)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 44433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=65.82 E-value=3.5 Score=19.43 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=11.4
Q ss_pred HHhhhhhhhcchHH
Q 013044 113 LAFNIADILGRRRE 126 (451)
Q Consensus 113 ~~g~l~dr~Grr~~ 126 (451)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46789999999865
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=30.28 E-value=1.2e+02 Score=24.24 Aligned_cols=25 Identities=16% Similarity=-0.007 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcch
Q 013044 100 TSGSLYGALIGSILAFNIADILGRR 124 (451)
Q Consensus 100 ~s~~~~~~~~~~~~~g~l~dr~Grr 124 (451)
+.-|.+|+.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4567888899999999999987543
No 17
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=23.51 E-value=66 Score=16.89 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=6.8
Q ss_pred HHhhcccCchH
Q 013044 229 MGMWWLPASPR 239 (451)
Q Consensus 229 ~~~~~~~e~~~ 239 (451)
....+++|+|+
T Consensus 18 FFAI~FRePPr 28 (32)
T 3arc_T 18 FFAIFFREPPR 28 (32)
T ss_dssp HHHHHTSCCCC
T ss_pred HHhhhhcCCCC
Confidence 34445688875
Done!