Query 013045
Match_columns 450
No_of_seqs 245 out of 1064
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 03:11:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.7 8.3E-18 2.8E-22 137.1 6.6 63 362-424 6-68 (83)
2 1x2n_A Homeobox protein pknox1 99.7 3.8E-17 1.3E-21 129.2 7.3 65 363-427 7-71 (73)
3 3k2a_A Homeobox protein MEIS2; 99.7 4.1E-17 1.4E-21 128.3 6.7 61 367-427 2-62 (67)
4 1du6_A PBX1, homeobox protein 99.7 9.6E-17 3.3E-21 123.7 7.3 62 363-424 3-64 (64)
5 2lk2_A Homeobox protein TGIF1; 99.7 6.4E-17 2.2E-21 135.3 6.1 58 367-424 9-66 (89)
6 1puf_B PRE-B-cell leukemia tra 99.6 2.8E-16 9.4E-21 124.2 7.4 64 364-427 2-65 (73)
7 1k61_A Mating-type protein alp 99.6 3E-16 1E-20 119.6 7.3 59 366-424 1-59 (60)
8 1le8_B Mating-type protein alp 99.6 4.2E-16 1.4E-20 126.7 8.0 65 363-427 2-66 (83)
9 1b72_B Protein (PBX1); homeodo 99.6 4E-16 1.4E-20 126.9 6.6 64 364-427 2-65 (87)
10 1mnm_C Protein (MAT alpha-2 tr 99.6 6E-16 2E-20 126.4 7.5 61 363-423 27-87 (87)
11 1akh_A Protein (mating-type pr 99.5 2.4E-14 8.2E-19 109.1 6.5 58 362-422 4-61 (61)
12 2cra_A Homeobox protein HOX-B1 99.5 4.5E-14 1.5E-18 110.8 8.0 63 363-428 7-69 (70)
13 2ecc_A Homeobox and leucine zi 99.5 3.5E-14 1.2E-18 115.6 7.2 60 365-427 5-64 (76)
14 2djn_A Homeobox protein DLX-5; 99.5 4.2E-14 1.4E-18 111.0 7.0 63 363-428 7-69 (70)
15 2dmu_A Homeobox protein goosec 99.5 4.3E-14 1.5E-18 110.8 7.0 63 363-428 7-69 (70)
16 2e1o_A Homeobox protein PRH; D 99.5 4.6E-14 1.6E-18 110.8 6.3 63 363-428 7-69 (70)
17 2da2_A Alpha-fetoprotein enhan 99.5 9.4E-14 3.2E-18 108.7 7.6 62 363-427 7-68 (70)
18 2da3_A Alpha-fetoprotein enhan 99.5 6.9E-14 2.3E-18 111.7 6.8 63 363-428 17-79 (80)
19 2dmt_A Homeobox protein BARH-l 99.5 1.1E-13 3.6E-18 111.5 7.9 63 363-428 17-79 (80)
20 2hdd_A Protein (engrailed home 99.5 7.8E-14 2.7E-18 106.6 6.7 60 362-424 2-61 (61)
21 1bw5_A ISL-1HD, insulin gene e 99.5 1.2E-13 4E-18 107.2 7.6 60 363-425 3-62 (66)
22 2da4_A Hypothetical protein DK 99.5 2.8E-14 9.7E-19 114.7 4.0 64 363-426 8-72 (80)
23 2da1_A Alpha-fetoprotein enhan 99.4 1.4E-13 4.8E-18 107.7 6.5 62 363-427 7-68 (70)
24 1ig7_A Homeotic protein MSX-1; 99.4 2E-13 6.7E-18 103.1 6.4 57 364-423 1-57 (58)
25 2h1k_A IPF-1, pancreatic and d 99.4 2.1E-13 7.2E-18 105.0 6.4 59 363-424 3-61 (63)
26 1wh5_A ZF-HD homeobox family p 99.4 2.9E-13 9.9E-18 109.9 7.3 62 363-424 17-79 (80)
27 1jgg_A Segmentation protein EV 99.4 2.5E-13 8.5E-18 103.5 6.4 58 364-424 2-59 (60)
28 2vi6_A Homeobox protein nanog; 99.4 3.5E-13 1.2E-17 103.3 7.0 58 363-423 3-60 (62)
29 3rkq_A Homeobox protein NKX-2. 99.4 3.1E-13 1.1E-17 101.3 6.5 57 363-422 2-58 (58)
30 2k40_A Homeobox expressed in E 99.4 4.1E-13 1.4E-17 104.4 6.8 60 364-426 2-61 (67)
31 2dmq_A LIM/homeobox protein LH 99.4 3.2E-13 1.1E-17 108.2 6.2 59 363-424 7-65 (80)
32 1ahd_P Antennapedia protein mu 99.4 2.5E-13 8.5E-18 106.4 5.4 61 363-426 2-62 (68)
33 1fjl_A Paired protein; DNA-bin 99.4 3.3E-13 1.1E-17 108.6 6.3 61 361-424 16-76 (81)
34 2l7z_A Homeobox protein HOX-A1 99.4 6.1E-13 2.1E-17 105.5 7.7 61 363-426 7-67 (73)
35 1ftt_A TTF-1 HD, thyroid trans 99.4 4.6E-13 1.6E-17 104.7 6.1 60 363-425 2-61 (68)
36 2dms_A Homeobox protein OTX2; 99.4 7.4E-13 2.5E-17 106.4 7.2 60 363-425 7-66 (80)
37 2dn0_A Zinc fingers and homeob 99.4 9.9E-13 3.4E-17 104.8 7.6 59 365-426 10-68 (76)
38 1nk2_P Homeobox protein VND; h 99.4 7.1E-13 2.4E-17 105.9 6.2 59 363-424 9-67 (77)
39 3a02_A Homeobox protein arista 99.4 1E-12 3.5E-17 100.1 6.6 56 366-424 2-57 (60)
40 1zq3_P PRD-4, homeotic bicoid 99.3 7E-13 2.4E-17 103.6 5.6 59 363-424 2-60 (68)
41 2kt0_A Nanog, homeobox protein 99.3 1.2E-12 4.2E-17 105.7 7.1 60 363-425 22-81 (84)
42 2cue_A Paired box protein PAX6 99.3 7E-13 2.4E-17 106.7 5.5 59 363-424 7-65 (80)
43 1yz8_P Pituitary homeobox 2; D 99.3 2.8E-13 9.7E-18 105.7 2.9 60 363-425 3-62 (68)
44 2ly9_A Zinc fingers and homeob 99.3 2.7E-12 9.2E-17 101.4 8.3 63 364-429 7-69 (74)
45 2m0c_A Homeobox protein arista 99.3 1.7E-12 5.6E-17 102.3 7.0 60 363-425 9-68 (75)
46 1b8i_A Ultrabithorax, protein 99.3 1.5E-12 5.2E-17 105.2 6.9 61 362-425 19-79 (81)
47 1puf_A HOX-1.7, homeobox prote 99.3 1.5E-12 5.1E-17 104.0 6.5 59 363-424 13-71 (77)
48 2d5v_A Hepatocyte nuclear fact 99.3 1.3E-12 4.5E-17 117.6 6.8 64 360-426 94-157 (164)
49 2da5_A Zinc fingers and homeob 99.3 2.4E-12 8.4E-17 102.6 7.1 59 365-426 9-67 (75)
50 2hi3_A Homeodomain-only protei 99.3 2E-12 6.7E-17 102.4 6.0 58 364-424 3-61 (73)
51 3a03_A T-cell leukemia homeobo 99.3 2.1E-12 7.2E-17 97.4 5.7 53 368-423 2-54 (56)
52 3a01_A Homeodomain-containing 99.3 1.8E-12 6E-17 107.6 5.7 60 363-425 17-76 (93)
53 1uhs_A HOP, homeodomain only p 99.3 2.4E-12 8.1E-17 101.5 6.1 59 365-425 3-61 (72)
54 2cuf_A FLJ21616 protein; homeo 99.3 1.8E-12 6.2E-17 107.5 5.5 59 363-424 7-80 (95)
55 3d1n_I POU domain, class 6, tr 99.3 3E-12 1E-16 114.3 7.1 58 363-423 93-150 (151)
56 2r5y_A Homeotic protein sex co 99.3 3.1E-12 1.1E-16 104.6 6.0 60 362-424 27-86 (88)
57 2dmp_A Zinc fingers and homeob 99.3 8.5E-12 2.9E-16 102.9 8.4 59 366-427 16-74 (89)
58 3nar_A ZHX1, zinc fingers and 99.3 6.2E-12 2.1E-16 104.6 7.3 61 363-426 25-85 (96)
59 2ecb_A Zinc fingers and homeob 99.3 1E-11 3.5E-16 103.5 8.5 55 367-424 15-69 (89)
60 1wh7_A ZF-HD homeobox family p 99.3 4.4E-12 1.5E-16 103.3 5.5 61 363-424 17-79 (80)
61 1b72_A Protein (homeobox prote 99.3 4.5E-12 1.5E-16 105.5 5.6 60 362-424 33-92 (97)
62 2e19_A Transcription factor 8; 99.2 1.2E-11 4.2E-16 96.5 7.4 57 366-425 6-62 (64)
63 3nau_A Zinc fingers and homeob 99.2 5.3E-12 1.8E-16 100.5 5.1 53 369-424 10-62 (66)
64 2cqx_A LAG1 longevity assuranc 99.2 7E-12 2.4E-16 99.9 5.7 61 365-428 10-71 (72)
65 1e3o_C Octamer-binding transcr 99.2 1.4E-11 4.7E-16 111.2 7.4 60 362-424 100-159 (160)
66 1au7_A Protein PIT-1, GHF-1; c 99.2 2E-11 6.8E-16 108.9 7.5 60 362-424 86-145 (146)
67 2xsd_C POU domain, class 3, tr 99.2 1.6E-11 5.6E-16 111.6 6.9 64 361-427 97-160 (164)
68 1x2m_A LAG1 longevity assuranc 99.1 4.2E-11 1.4E-15 94.5 6.1 55 373-429 10-64 (64)
69 2l9r_A Homeobox protein NKX-3. 99.1 6.8E-11 2.3E-15 94.1 7.3 55 369-426 10-64 (69)
70 1lfb_A Liver transcription fac 99.1 4.8E-11 1.6E-15 100.9 6.4 63 360-425 6-89 (99)
71 1wi3_A DNA-binding protein SAT 99.1 1.3E-10 4.4E-15 93.5 7.6 65 362-428 6-70 (71)
72 3l1p_A POU domain, class 5, tr 99.1 3.2E-11 1.1E-15 108.4 4.5 60 362-424 95-154 (155)
73 2da6_A Hepatocyte nuclear fact 99.1 6.3E-11 2.2E-15 101.3 5.6 59 363-424 6-85 (102)
74 1mh3_A Maltose binding-A1 home 99.0 3.6E-10 1.2E-14 110.6 5.6 54 366-422 368-421 (421)
75 2h8r_A Hepatocyte nuclear fact 98.9 8.7E-10 3E-14 105.4 6.7 57 363-422 142-219 (221)
76 1ic8_A Hepatocyte nuclear fact 98.9 6.2E-10 2.1E-14 104.3 4.0 59 362-423 114-193 (194)
77 2da7_A Zinc finger homeobox pr 98.8 6.3E-09 2.1E-13 83.9 6.1 48 372-422 14-61 (71)
78 2nzz_A Penetratin conjugated G 95.2 0.0027 9.2E-08 45.3 -0.4 18 408-425 1-18 (37)
79 2ys9_A Homeobox and leucine zi 94.5 0.022 7.6E-07 45.8 3.1 45 370-417 13-57 (70)
80 1hlv_A CENP-B, major centromer 62.4 18 0.00061 29.7 6.5 50 365-420 3-52 (131)
81 2glo_A Brinker CG9653-PA; prot 58.0 13 0.00045 27.1 4.4 48 366-417 2-49 (59)
82 1tc3_C Protein (TC3 transposas 50.3 17 0.00057 23.9 3.6 43 367-417 3-45 (51)
83 2elh_A CG11849-PA, LD40883P; s 47.8 22 0.00074 27.9 4.4 46 365-418 18-63 (87)
84 2o8x_A Probable RNA polymerase 44.1 17 0.00059 26.3 3.1 50 368-425 14-63 (70)
85 3hug_A RNA polymerase sigma fa 40.7 12 0.00042 29.3 2.0 48 369-424 37-84 (92)
86 2jqq_A Conserved oligomeric go 37.8 39 0.0013 31.9 5.1 39 244-284 82-120 (204)
87 3swk_A Vimentin; cytoskeleton, 36.2 1.1E+02 0.0039 24.7 7.1 48 236-283 20-76 (86)
88 2p7v_B Sigma-70, RNA polymeras 33.3 30 0.001 25.5 2.9 55 368-426 4-58 (68)
89 3mzy_A RNA polymerase sigma-H 33.0 20 0.00068 29.4 2.1 47 369-424 109-155 (164)
90 1sse_B AP-1 like transcription 33.0 38 0.0013 28.2 3.7 29 156-187 20-48 (86)
91 1ku3_A Sigma factor SIGA; heli 31.7 38 0.0013 25.2 3.3 53 368-424 9-62 (73)
92 1tty_A Sigma-A, RNA polymerase 31.2 31 0.0011 26.9 2.8 55 368-426 17-71 (87)
93 2rnj_A Response regulator prot 28.3 96 0.0033 24.1 5.3 49 368-425 28-76 (91)
94 2k27_A Paired box protein PAX- 27.2 2E+02 0.007 24.1 7.6 56 367-425 81-143 (159)
95 1fse_A GERE; helix-turn-helix 27.1 75 0.0026 23.0 4.2 50 367-425 9-58 (74)
96 3bd1_A CRO protein; transcript 26.2 40 0.0014 25.2 2.6 23 396-418 14-36 (79)
97 1rp3_A RNA polymerase sigma fa 26.0 29 0.00097 30.4 2.0 48 368-423 186-233 (239)
98 1jko_C HIN recombinase, DNA-in 25.9 41 0.0014 22.4 2.4 41 368-416 4-44 (52)
99 1iuf_A Centromere ABP1 protein 25.7 81 0.0028 26.9 4.8 53 364-419 6-62 (144)
100 3c57_A Two component transcrip 25.4 67 0.0023 25.4 3.9 50 368-426 26-75 (95)
101 2r1j_L Repressor protein C2; p 24.8 41 0.0014 23.7 2.3 23 396-418 21-43 (68)
102 2xi8_A Putative transcription 24.8 40 0.0014 23.5 2.3 23 396-418 17-39 (66)
103 1or7_A Sigma-24, RNA polymeras 24.8 38 0.0013 28.9 2.5 48 369-424 140-187 (194)
104 1zug_A Phage 434 CRO protein; 24.4 40 0.0014 24.0 2.2 24 396-419 19-42 (71)
105 1x3u_A Transcriptional regulat 23.9 46 0.0016 24.7 2.5 47 370-425 17-63 (79)
106 3lsg_A Two-component response 23.8 1.3E+02 0.0044 23.5 5.3 41 374-417 3-43 (103)
107 1je8_A Nitrate/nitrite respons 23.7 58 0.002 25.1 3.2 49 368-425 20-68 (82)
108 2q1z_A RPOE, ECF SIGE; ECF sig 22.7 26 0.0009 29.7 1.0 47 369-423 135-181 (184)
109 2rn7_A IS629 ORFA; helix, all 22.5 1.6E+02 0.0055 23.2 5.7 52 367-419 4-56 (108)
110 1adr_A P22 C2 repressor; trans 22.0 49 0.0017 23.9 2.3 23 396-418 21-43 (76)
111 1s7o_A Hypothetical UPF0122 pr 22.0 45 0.0015 27.8 2.4 47 369-423 22-68 (113)
112 3bs3_A Putative DNA-binding pr 21.7 51 0.0017 23.9 2.4 23 396-418 26-48 (76)
113 3ol1_A Vimentin; structural ge 21.7 2.6E+02 0.0089 23.6 7.1 47 237-283 41-96 (119)
114 1xc0_A Pardaxin P-4, PA4; BEND 20.9 49 0.0017 22.5 1.8 22 176-197 5-26 (33)
115 2b5a_A C.BCLI; helix-turn-heli 20.9 53 0.0018 23.8 2.3 23 396-418 26-48 (77)
116 3kz3_A Repressor protein CI; f 20.7 1.2E+02 0.004 22.6 4.3 38 376-416 40-77 (80)
117 1r69_A Repressor protein CI; g 20.7 54 0.0019 23.1 2.3 23 396-418 17-39 (69)
118 2wiu_B HTH-type transcriptiona 20.2 68 0.0023 23.9 2.9 23 396-418 28-50 (88)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.71 E-value=8.3e-18 Score=137.06 Aligned_cols=63 Identities=41% Similarity=0.758 Sum_probs=59.6
Q ss_pred hhcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 362 ~kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
.++|+|+.|+++++.+|+.||.+|..+|||+..+|..||..|||+..||.+||+|+|+|.|+.
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPD 68 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHH
Confidence 356778899999999999999999999999999999999999999999999999999999875
No 2
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=3.8e-17 Score=129.19 Aligned_cols=65 Identities=46% Similarity=0.847 Sum_probs=61.0
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ps 427 (450)
.+|+|+.|++.++.+|+.||..|..+|||+..+|..||..+||++.||.+||+|+|+|.|++...
T Consensus 7 ~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 7 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 46777899999999999999999999999999999999999999999999999999999987654
No 3
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=4.1e-17 Score=128.27 Aligned_cols=61 Identities=41% Similarity=0.796 Sum_probs=54.0
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCCC
Q 013045 367 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (450)
Q Consensus 367 rgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ps 427 (450)
.|+||++++.+|+.||.+|..+|||+..+|..||..+||+..||.+||+|+|+|.|++...
T Consensus 2 ~g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999988653
No 4
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=9.6e-17 Score=123.73 Aligned_cols=62 Identities=31% Similarity=0.583 Sum_probs=58.6
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
.+++|..|++.+..+|+.||..|..+|||+..++..||..+||+..||.+||+|+|+|.|++
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 46778899999999999999999999999999999999999999999999999999999874
No 5
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.66 E-value=6.4e-17 Score=135.29 Aligned_cols=58 Identities=38% Similarity=0.678 Sum_probs=55.3
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 367 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 367 rgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
..-||++++.+|++||.+|..+|||++++|..||..|||+.+||+|||+|+|+|.|++
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~ 66 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPD 66 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhH
Confidence 3569999999999999999999999999999999999999999999999999999874
No 6
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.64 E-value=2.8e-16 Score=124.23 Aligned_cols=64 Identities=31% Similarity=0.599 Sum_probs=60.1
Q ss_pred cCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCCC
Q 013045 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (450)
Q Consensus 364 KRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ps 427 (450)
+|+|+.|++.++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|+|.|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 6788899999999999999999999999999999999999999999999999999999886543
No 7
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.64 E-value=3e-16 Score=119.56 Aligned_cols=59 Identities=25% Similarity=0.529 Sum_probs=56.4
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 366 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 366 KrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
|+++|+++++.+|+.||..|..+|||+..++..||..+||++.||.+||+|+|+|.|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 46799999999999999999999999999999999999999999999999999998874
No 8
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.63 E-value=4.2e-16 Score=126.68 Aligned_cols=65 Identities=22% Similarity=0.445 Sum_probs=58.0
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ps 427 (450)
+++++.+|+.+++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|+|.|+...+
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 34455669999999999999999999999999999999999999999999999999999987543
No 9
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.62 E-value=4e-16 Score=126.91 Aligned_cols=64 Identities=31% Similarity=0.599 Sum_probs=59.6
Q ss_pred cCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCCC
Q 013045 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (450)
Q Consensus 364 KRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ps 427 (450)
+|+|..|++.++.+|+.||..|..+|||+..+|..||..+||+..||.+||+|+|+|.|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6788999999999999999999999999999999999999999999999999999999887543
No 10
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.62 E-value=6e-16 Score=126.44 Aligned_cols=61 Identities=25% Similarity=0.523 Sum_probs=57.4
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK 423 (450)
++|+|..|+++++.+|+.||..|..+|||+..+|..||..+||+..||.+||+|+|+|.|.
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 4566789999999999999999999999999999999999999999999999999999763
No 11
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.50 E-value=2.4e-14 Score=109.13 Aligned_cols=58 Identities=17% Similarity=0.346 Sum_probs=47.8
Q ss_pred hhcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 013045 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 422 (450)
Q Consensus 362 ~kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~k 422 (450)
.++|+|..|+..+..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.+
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 34567789999999999999998 79999999999999999999999999999999864
No 12
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=4.5e-14 Score=110.84 Aligned_cols=63 Identities=21% Similarity=0.363 Sum_probs=58.7
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCCCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ps~ 428 (450)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..+++
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (70)
T 2cra_A 7 GRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPSS 69 (70)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCTTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCCCC
Confidence 4677789999999999999998 89999999999999999999999999999999999987764
No 13
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=3.5e-14 Score=115.56 Aligned_cols=60 Identities=25% Similarity=0.371 Sum_probs=55.6
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCCC
Q 013045 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (450)
Q Consensus 365 RKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ps 427 (450)
.++++|+++++.+|+.||.. +|||+..++..||..|||+..||.+||+|+|.|.|+....
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~---~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 56788999999999999998 8999999999999999999999999999999999876543
No 14
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=4.2e-14 Score=111.03 Aligned_cols=63 Identities=24% Similarity=0.368 Sum_probs=58.5
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCCCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ps~ 428 (450)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..+++
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ss 69 (70)
T 2djn_A 7 GRKPRTIYSSFQLAALQRRFQK---TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGPSS 69 (70)
T ss_dssp CCCSSCSSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCCCC
Confidence 4677789999999999999987 89999999999999999999999999999999999987764
No 15
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=4.3e-14 Score=110.82 Aligned_cols=63 Identities=22% Similarity=0.451 Sum_probs=58.6
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCCCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ps~ 428 (450)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++..+++
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~~ 69 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPSS 69 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCCC
Confidence 4677789999999999999998 89999999999999999999999999999999999887654
No 16
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=4.6e-14 Score=110.79 Aligned_cols=63 Identities=25% Similarity=0.425 Sum_probs=58.4
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCCCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ps~ 428 (450)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++..++.
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~s 69 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPSS 69 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCCC
Confidence 4667789999999999999988 89999999999999999999999999999999999877654
No 17
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.47 E-value=9.4e-14 Score=108.70 Aligned_cols=62 Identities=23% Similarity=0.450 Sum_probs=57.7
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ps 427 (450)
++|+|..|+.++..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++...+
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 4667789999999999999998 8899999999999999999999999999999999987654
No 18
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.46 E-value=6.9e-14 Score=111.71 Aligned_cols=63 Identities=25% Similarity=0.403 Sum_probs=58.2
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCCCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ps~ 428 (450)
++|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..++.
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~f~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~s 79 (80)
T 2da3_A 17 DKRLRTTITPEQLEILYQKYLL---DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPSS 79 (80)
T ss_dssp CTTCCSSCCTTTHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhccCC
Confidence 4567789999999999999998 78999999999999999999999999999999999887653
No 19
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=111.49 Aligned_cols=63 Identities=22% Similarity=0.359 Sum_probs=58.5
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCCCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ps~ 428 (450)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..++.
T Consensus 17 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ss 79 (80)
T 2dmt_A 17 GRRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGPSS 79 (80)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccCCC
Confidence 4567788999999999999998 88999999999999999999999999999999999987764
No 20
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.46 E-value=7.8e-14 Score=106.62 Aligned_cols=60 Identities=30% Similarity=0.401 Sum_probs=52.8
Q ss_pred hhcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 362 ~kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
.++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccccC
Confidence 35778889999999999999998 8999999999999999999999999999999998864
No 21
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.46 E-value=1.2e-13 Score=107.21 Aligned_cols=60 Identities=27% Similarity=0.401 Sum_probs=56.2
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ 425 (450)
++|+|..|+.++..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4677889999999999999998 89999999999999999999999999999999998764
No 22
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.8e-14 Score=114.65 Aligned_cols=64 Identities=13% Similarity=0.261 Sum_probs=57.1
Q ss_pred hcCCCCCCChhHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSH-SKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H-~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~p 426 (450)
++|+|..|+.+++.+|+.||..+ ..+|||+..++..||..+||++.||.+||+|+|.|.++...
T Consensus 8 ~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~ 72 (80)
T 2da4_A 8 ALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGI 72 (80)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccC
Confidence 45677789999999999999885 44599999999999999999999999999999999987543
No 23
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.43 E-value=1.4e-13 Score=107.72 Aligned_cols=62 Identities=29% Similarity=0.510 Sum_probs=57.2
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ps 427 (450)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++....
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 7 GKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp CCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 4677789999999999999998 8999999999999999999999999999999999887543
No 24
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.42 E-value=2e-13 Score=103.10 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=53.6
Q ss_pred cCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccC
Q 013045 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (450)
Q Consensus 364 KRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK 423 (450)
+|+|..|+.++..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467789999999999999998 899999999999999999999999999999999765
No 25
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.42 E-value=2.1e-13 Score=105.00 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=54.0
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 4677889999999999999998 8999999999999999999999999999999998763
No 26
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.41 E-value=2.9e-13 Score=109.90 Aligned_cols=62 Identities=21% Similarity=0.294 Sum_probs=57.1
Q ss_pred hcCCCCCCChhHHHHHHHHHHh-cCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQS-HSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~-H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
+||+|..|+.+++..|+.+|.. ++++|||+..++..||..+||++.||.+||+|+|.+.+++
T Consensus 17 ~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 17 RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp SCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 5677789999999999999986 6789999999999999999999999999999999998764
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.41 E-value=2.5e-13 Score=103.50 Aligned_cols=58 Identities=19% Similarity=0.309 Sum_probs=53.8
Q ss_pred cCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 364 KRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 467789999999999999998 8999999999999999999999999999999998763
No 28
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.41 E-value=3.5e-13 Score=103.32 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=51.4
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK 423 (450)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 4567789999999999999998 889999999999999999999999999999999886
No 29
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.40 E-value=3.1e-13 Score=101.29 Aligned_cols=57 Identities=18% Similarity=0.305 Sum_probs=53.2
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 422 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~k 422 (450)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ---QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 4677889999999999999986 89999999999999999999999999999999864
No 30
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.39 E-value=4.1e-13 Score=104.37 Aligned_cols=60 Identities=25% Similarity=0.382 Sum_probs=55.7
Q ss_pred cCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCC
Q 013045 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (450)
Q Consensus 364 KRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~p 426 (450)
+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV---NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 567889999999999999976 999999999999999999999999999999999987643
No 31
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.2e-13 Score=108.19 Aligned_cols=59 Identities=25% Similarity=0.402 Sum_probs=55.5
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
++|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAI---NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 65 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHH
Confidence 4677889999999999999998 8899999999999999999999999999999999874
No 32
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.39 E-value=2.5e-13 Score=106.37 Aligned_cols=61 Identities=25% Similarity=0.294 Sum_probs=56.8
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~p 426 (450)
++|+|..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 5778899999999999999998 889999999999999999999999999999999987543
No 33
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.39 E-value=3.3e-13 Score=108.65 Aligned_cols=61 Identities=23% Similarity=0.351 Sum_probs=55.7
Q ss_pred HhhcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 361 ILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 361 ~~kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
..++|+|..|+..+..+|+.||.. +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhh
Confidence 345667789999999999999998 8999999999999999999999999999999998864
No 34
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.39 E-value=6.1e-13 Score=105.48 Aligned_cols=61 Identities=16% Similarity=0.271 Sum_probs=56.6
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~p 426 (450)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+...
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 4667789999999999999998 899999999999999999999999999999999988643
No 35
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.38 E-value=4.6e-13 Score=104.68 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=56.2
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ 425 (450)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 5677889999999999999998 88999999999999999999999999999999998754
No 36
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=7.4e-13 Score=106.39 Aligned_cols=60 Identities=17% Similarity=0.323 Sum_probs=55.7
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ 425 (450)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 7 GRRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 4667789999999999999998 89999999999999999999999999999999988754
No 37
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=9.9e-13 Score=104.85 Aligned_cols=59 Identities=20% Similarity=0.349 Sum_probs=54.9
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCC
Q 013045 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (450)
Q Consensus 365 RKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~p 426 (450)
+.|.+|+.++..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+...
T Consensus 10 ~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 10 IYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 45788999999999999998 889999999999999999999999999999999988644
No 38
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.36 E-value=7.1e-13 Score=105.92 Aligned_cols=59 Identities=19% Similarity=0.327 Sum_probs=54.4
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~ 67 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhh
Confidence 3566778999999999999998 8899999999999999999999999999999998763
No 39
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.35 E-value=1e-12 Score=100.11 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=49.8
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 366 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 366 KrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
.|..|+.++..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp ---CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CCcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 3578999999999999988 8999999999999999999999999999999998874
No 40
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.35 E-value=7e-13 Score=103.65 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=55.1
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHH
Confidence 4677889999999999999987 8999999999999999999999999999999998864
No 41
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.35 E-value=1.2e-12 Score=105.68 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=55.6
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ 425 (450)
++|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 22 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 22 KQKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4567789999999999999998 88999999999999999999999999999999988753
No 42
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.35 E-value=7e-13 Score=106.68 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=55.1
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (80)
T 2cue_A 7 GQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 65 (80)
T ss_dssp SCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHH
Confidence 4677789999999999999987 8999999999999999999999999999999998874
No 43
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.34 E-value=2.8e-13 Score=105.74 Aligned_cols=60 Identities=18% Similarity=0.347 Sum_probs=55.5
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ 425 (450)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 4677889999999999999987 89999999999999999999999999999999987653
No 44
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.34 E-value=2.7e-12 Score=101.39 Aligned_cols=63 Identities=22% Similarity=0.352 Sum_probs=57.4
Q ss_pred cCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCCCCC
Q 013045 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 429 (450)
Q Consensus 364 KRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ps~s 429 (450)
++.|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.....+
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 69 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQC 69 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSCC
T ss_pred CCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCCC
Confidence 567789999999999999998 889999999999999999999999999999999988755433
No 45
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.33 E-value=1.7e-12 Score=102.33 Aligned_cols=60 Identities=20% Similarity=0.348 Sum_probs=55.2
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ 425 (450)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 9 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 9 KRRNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CCSCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 4566778999999999999998 88999999999999999999999999999999988753
No 46
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.33 E-value=1.5e-12 Score=105.22 Aligned_cols=61 Identities=23% Similarity=0.306 Sum_probs=53.5
Q ss_pred hhcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCC
Q 013045 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (450)
Q Consensus 362 ~kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ 425 (450)
.++|+|..|+..+..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 34667889999999999999998 88999999999999999999999999999999998764
No 47
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.33 E-value=1.5e-12 Score=104.04 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=54.7
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 13 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 13 TRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 4567789999999999999998 8899999999999999999999999999999998763
No 48
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.33 E-value=1.3e-12 Score=117.56 Aligned_cols=64 Identities=20% Similarity=0.302 Sum_probs=54.0
Q ss_pred HHhhcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCC
Q 013045 360 EILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (450)
Q Consensus 360 e~~kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~p 426 (450)
....||+|..|+..++.+|+.||.. +|||+..+|..||..+||++.||.+||+|+|+|.|+...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 3445778889999999999999999 789999999999999999999999999999999988643
No 49
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2.4e-12 Score=102.63 Aligned_cols=59 Identities=24% Similarity=0.418 Sum_probs=54.3
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCC
Q 013045 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (450)
Q Consensus 365 RKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~p 426 (450)
+|+.+|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 45678999999999999998 899999999999999999999999999999999987543
No 50
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.31 E-value=2e-12 Score=102.41 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=53.8
Q ss_pred cCCCCCCChhHHHHHHHHHH-hcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 364 KRRAGKLPGDTTSVLKSWWQ-SHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 364 KRKrgkLpkea~~iLk~Wf~-~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
+++|..|+.++..+|+.+|. . +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~ 61 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 61 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT---TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 46778999999999999998 5 7899999999999999999999999999999998774
No 51
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.30 E-value=2.1e-12 Score=97.43 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=49.1
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccC
Q 013045 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (450)
Q Consensus 368 gkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK 423 (450)
..|+.++...|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+
T Consensus 2 T~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp --CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 36899999999999998 899999999999999999999999999999999875
No 52
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.30 E-value=1.8e-12 Score=107.61 Aligned_cols=60 Identities=18% Similarity=0.332 Sum_probs=55.7
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ 425 (450)
++|+|..|+..+...|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 76 (93)
T 3a01_A 17 RKKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQT 76 (93)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhh
Confidence 4667789999999999999998 88999999999999999999999999999999988753
No 53
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.30 E-value=2.4e-12 Score=101.52 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=53.4
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCC
Q 013045 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (450)
Q Consensus 365 RKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ 425 (450)
++|..|+..+..+|+.+|.. .+|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~--~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNK--VNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHS--SCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHc--cCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 56788999999999999972 178999999999999999999999999999999988753
No 54
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.30 E-value=1.8e-12 Score=107.52 Aligned_cols=59 Identities=19% Similarity=0.382 Sum_probs=55.2
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhC---------------CChhhhhhhhhhhhhhccCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETG---------------LQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~Tg---------------Ls~kQInNWFiNrRkR~kK~ 424 (450)
++|+|..|+..++.+|+.||.. +|||+..++..||..+| |+..||.+||+|+|+|.|+.
T Consensus 7 ~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~ 80 (95)
T 2cuf_A 7 GRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 80 (95)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 4567779999999999999999 89999999999999999 99999999999999999864
No 55
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.29 E-value=3e-12 Score=114.30 Aligned_cols=58 Identities=17% Similarity=0.444 Sum_probs=54.2
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK 423 (450)
++|+|..|+..++.+|+.||.. +|||+..++..||..+||++.||.+||+|+|.|.||
T Consensus 93 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 93 KRKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4556678999999999999998 899999999999999999999999999999999886
No 56
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.28 E-value=3.1e-12 Score=104.60 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=53.3
Q ss_pred hhcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 362 ~kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
..+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 35677889999999999999987 8999999999999999999999999999999998875
No 57
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=8.5e-12 Score=102.86 Aligned_cols=59 Identities=22% Similarity=0.375 Sum_probs=53.4
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCCC
Q 013045 366 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (450)
Q Consensus 366 KrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ps 427 (450)
|+.+++.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++....
T Consensus 16 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~ 74 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQA 74 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSC
T ss_pred ccccCCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHh
Confidence 4455999999999999998 8899999999999999999999999999999998776543
No 58
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.27 E-value=6.2e-12 Score=104.60 Aligned_cols=61 Identities=25% Similarity=0.351 Sum_probs=55.4
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~p 426 (450)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 3467789999999999999998 889999999999999999999999999999999998653
No 59
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.27 E-value=1e-11 Score=103.49 Aligned_cols=55 Identities=22% Similarity=0.339 Sum_probs=51.0
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 367 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 367 rgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
.+.|+.+++.+|+.+|.. +|||+..+|..||..+||++.||.+||+|+|.|.++.
T Consensus 15 ~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~ 69 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69 (89)
T ss_dssp CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred hccCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHH
Confidence 348999999999999998 8899999999999999999999999999999887653
No 60
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.26 E-value=4.4e-12 Score=103.26 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=54.5
Q ss_pred hcCCCCCCChhHHHHHHHHHHhc--CCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSH--SKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H--~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
+||+|..|+.+++..|+ -|..+ .++|||+..++..||..+||++.||.+||+|+|.+.+++
T Consensus 17 ~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 17 TKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp SSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 56777889999999999 57774 448999999999999999999999999999999998864
No 61
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.25 E-value=4.5e-12 Score=105.51 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=53.0
Q ss_pred hhcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 362 ~kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
..+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 45667889999999999999987 8899999999999999999999999999999998764
No 62
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.2e-11 Score=96.55 Aligned_cols=57 Identities=16% Similarity=0.327 Sum_probs=51.9
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCC
Q 013045 366 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (450)
Q Consensus 366 KrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ 425 (450)
.+..+.++++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++-.
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~ 62 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYAL---NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQ 62 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSS
T ss_pred CCCCccHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCC
Confidence 3467789999999999976 89999999999999999999999999999999988754
No 63
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.24 E-value=5.3e-12 Score=100.47 Aligned_cols=53 Identities=26% Similarity=0.476 Sum_probs=48.8
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 369 kLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
+-+++++..|+..|.. +|||+..++..||..|||+..||.+||+|+|.|.|+.
T Consensus 10 ~~~~~Ql~~LE~~F~~---~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 10 KKTKEQIAHLKASFLQ---SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp -CCHHHHHHHHHHHHG---GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 4578999999999999 8899999999999999999999999999999988753
No 64
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.24 E-value=7e-12 Score=99.89 Aligned_cols=61 Identities=20% Similarity=0.375 Sum_probs=55.2
Q ss_pred CCCCCCChhHHHHHHHHH-HhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCCCC
Q 013045 365 RRAGKLPGDTTSVLKSWW-QSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (450)
Q Consensus 365 RKrgkLpkea~~iLk~Wf-~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ps~ 428 (450)
++++.++.++..+|+..| .. ++||+..++..||..+||++.||.+||+|+|.+.++..++.
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~---~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~~s~ 71 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSV---TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGPSS 71 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCCCCC
Confidence 456678889999999999 76 88999999999999999999999999999999999887653
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.22 E-value=1.4e-11 Score=111.20 Aligned_cols=60 Identities=18% Similarity=0.356 Sum_probs=53.8
Q ss_pred hhcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 362 ~kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
.++|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 45677889999999999999998 8999999999999999999999999999999999875
No 66
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.20 E-value=2e-11 Score=108.92 Aligned_cols=60 Identities=18% Similarity=0.412 Sum_probs=54.1
Q ss_pred hhcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 362 ~kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
.++|+|..|+..+...|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 34566789999999999999998 8999999999999999999999999999999998874
No 67
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.20 E-value=1.6e-11 Score=111.61 Aligned_cols=64 Identities=17% Similarity=0.379 Sum_probs=52.0
Q ss_pred HhhcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCCC
Q 013045 361 ILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (450)
Q Consensus 361 ~~kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ps 427 (450)
..++|+|..|+..++..|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+...+
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ---------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred ccCCCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 345667789999999999999998 8999999999999999999999999999999999987654
No 68
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.15 E-value=4.2e-11 Score=94.48 Aligned_cols=55 Identities=20% Similarity=0.409 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCCCCC
Q 013045 373 DTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 429 (450)
Q Consensus 373 ea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ps~s 429 (450)
.....|+..|.. .++||+..++..||..+||++.||.+||+|+|.+.|+..|+.+
T Consensus 10 ~~~~~LE~~F~~--~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~~~~~ 64 (64)
T 1x2m_A 10 QPNAILEKVFTA--ITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSGPSSG 64 (64)
T ss_dssp CHHHHHHHHHHT--TCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred hHHHHHHHHHHH--cCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCCCCC
Confidence 468899999943 2679999999999999999999999999999999998888753
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.15 E-value=6.8e-11 Score=94.06 Aligned_cols=55 Identities=18% Similarity=0.308 Sum_probs=50.9
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCC
Q 013045 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (450)
Q Consensus 369 kLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~p 426 (450)
.++..+...|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+...
T Consensus 10 ~~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 10 HMSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred cCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 4678899999999988 889999999999999999999999999999999987654
No 70
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.14 E-value=4.8e-11 Score=100.95 Aligned_cols=63 Identities=24% Similarity=0.383 Sum_probs=52.0
Q ss_pred HHhhcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHH------------------hC---CChhhhhhhhhhhh
Q 013045 360 EILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQE------------------TG---LQLKQINNWFINQR 418 (450)
Q Consensus 360 e~~kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~------------------Tg---Ls~kQInNWFiNrR 418 (450)
..+++|+|..|+..+..+|+.+|.. +|||+..+|..||.. +| |+..||.+||+|+|
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHH
Confidence 3455677789999999999999987 899999999999999 77 99999999999999
Q ss_pred hhccCCC
Q 013045 419 KRNWHSN 425 (450)
Q Consensus 419 kR~kK~~ 425 (450)
++.++..
T Consensus 83 ~k~k~k~ 89 (99)
T 1lfb_A 83 KEEAFRH 89 (99)
T ss_dssp HTTSCCC
T ss_pred HHHHHhc
Confidence 9886643
No 71
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.12 E-value=1.3e-10 Score=93.50 Aligned_cols=65 Identities=28% Similarity=0.347 Sum_probs=59.1
Q ss_pred hhcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCCCC
Q 013045 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (450)
Q Consensus 362 ~kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ps~ 428 (450)
.+||.|+.|+.++..+|+..|.. .+|||+.+.++.||.+|||++.+|..||+|+|--.+++.++.
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~--~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~~~~~ 70 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHD--VGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGPSS 70 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHH--HCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSSCSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecCCCCCC
Confidence 45778889999999999999987 356999999999999999999999999999999999887764
No 72
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.11 E-value=3.2e-11 Score=108.42 Aligned_cols=60 Identities=22% Similarity=0.424 Sum_probs=54.7
Q ss_pred hhcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 362 ~kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
.+||+|..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLK---SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTT---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 35667788999999999999976 8999999999999999999999999999999998875
No 73
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=6.3e-11 Score=101.32 Aligned_cols=59 Identities=24% Similarity=0.352 Sum_probs=54.0
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHh---------------------CCChhhhhhhhhhhhhhc
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQET---------------------GLQLKQINNWFINQRKRN 421 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~T---------------------gLs~kQInNWFiNrRkR~ 421 (450)
++|+|..|++.++.+|+.+|.. +|||+..+|+.||..+ +|+..+|.+||+|+|+|.
T Consensus 6 ~Rr~Rt~ft~~ql~~Le~~F~~---~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 6 SGRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp SCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 4566778999999999999998 8899999999999999 799999999999999998
Q ss_pred cCC
Q 013045 422 WHS 424 (450)
Q Consensus 422 kK~ 424 (450)
++.
T Consensus 83 kr~ 85 (102)
T 2da6_A 83 AFR 85 (102)
T ss_dssp HHH
T ss_pred HHh
Confidence 763
No 74
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.97 E-value=3.6e-10 Score=110.60 Aligned_cols=54 Identities=20% Similarity=0.390 Sum_probs=50.2
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 013045 366 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 422 (450)
Q Consensus 366 KrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~k 422 (450)
.+..|...++..|+..|.. +|||++.+|..||..|||++.||++||+|+|+|.|
T Consensus 368 ~~~~~~~~q~~~Le~~f~~---~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 368 AAAAISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHCSSCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhcchHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3457899999999999988 88999999999999999999999999999999975
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.94 E-value=8.7e-10 Score=105.42 Aligned_cols=57 Identities=25% Similarity=0.408 Sum_probs=52.3
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhhhhhc
Q 013045 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETG---------------------LQLKQINNWFINQRKRN 421 (450)
Q Consensus 363 kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~Tg---------------------Ls~kQInNWFiNrRkR~ 421 (450)
++|.|.+|++.++.+|+.||.. +|||+..+|+.||..|| |+..||.|||+|+|++.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 5666778999999999999998 89999999999999998 89999999999999975
Q ss_pred c
Q 013045 422 W 422 (450)
Q Consensus 422 k 422 (450)
.
T Consensus 219 ~ 219 (221)
T 2h8r_A 219 A 219 (221)
T ss_dssp C
T ss_pred h
Confidence 3
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.89 E-value=6.2e-10 Score=104.29 Aligned_cols=59 Identities=24% Similarity=0.385 Sum_probs=52.5
Q ss_pred hhcCCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhhhhh
Q 013045 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETG---------------------LQLKQINNWFINQRKR 420 (450)
Q Consensus 362 ~kKRKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~Tg---------------------Ls~kQInNWFiNrRkR 420 (450)
+++|+|..|++.++.+|+.+|.. +|||+..+|..||..|+ |+..||.+||+|+|++
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F~~---~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH---HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 34667789999999999999998 88999999999999999 9999999999999999
Q ss_pred ccC
Q 013045 421 NWH 423 (450)
Q Consensus 421 ~kK 423 (450)
.+.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 764
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=6.3e-09 Score=83.90 Aligned_cols=48 Identities=21% Similarity=0.448 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 013045 372 GDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 422 (450)
Q Consensus 372 kea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~k 422 (450)
++++.+|+..|.. +|||+.+++..||..+||++..|+.||+|+|.+..
T Consensus 14 k~ql~~Lk~yF~~---n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~~ 61 (71)
T 2da7_A 14 KDHMSVLKAYYAM---NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQY 61 (71)
T ss_dssp THHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccccc
Confidence 6789999999999 89999999999999999999999999999998543
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=95.23 E-value=0.0027 Score=45.26 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=15.8
Q ss_pred hhhhhhhhhhhhhccCCC
Q 013045 408 KQINNWFINQRKRNWHSN 425 (450)
Q Consensus 408 kQInNWFiNrRkR~kK~~ 425 (450)
.||..||+|+|.|.|+..
T Consensus 1 rQVkIWFQNRRaK~Kk~~ 18 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRV 18 (37)
T ss_dssp CCTTTTTTCSHHHHTSSH
T ss_pred CCceeccHHHHHHHHHHh
Confidence 489999999999998863
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.50 E-value=0.022 Score=45.81 Aligned_cols=45 Identities=27% Similarity=0.522 Sum_probs=39.9
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 013045 370 LPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQ 417 (450)
Q Consensus 370 Lpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNr 417 (450)
.++..+++|+++|..|. ...+++...|+.+++|+..||..||.-+
T Consensus 13 ~~p~~~e~L~~Yy~~hk---~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAHQ---QLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCCCCHHHHHHHHHTC---CCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHhc---ccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 45567899999999987 7889999999999999999999999643
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=62.42 E-value=18 Score=29.69 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=38.7
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhh
Q 013045 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 420 (450)
Q Consensus 365 RKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR 420 (450)
++|.+|+.+.+..+-.++.. .+.++. ..+|+.+|++...|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~---~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEE---NPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHH---CTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHH---CCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 35678999998777777765 445552 368899999999999999887664
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=58.00 E-value=13 Score=27.08 Aligned_cols=48 Identities=6% Similarity=0.155 Sum_probs=32.6
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 013045 366 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQ 417 (450)
Q Consensus 366 KrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNr 417 (450)
++++|+.+.+......+.. . ++.......+|...|++...|.+|....
T Consensus 2 ~r~~ys~efK~~~~~~~~~-g---~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYRN-D---NDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCCCHHHHHHHHHHHHH-C---TTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCCcCCHHHHHHHHHHHHc-C---CCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4568998887666554443 1 1211225689999999999999996543
No 82
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=50.27 E-value=17 Score=23.87 Aligned_cols=43 Identities=7% Similarity=0.034 Sum_probs=29.6
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 013045 367 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQ 417 (450)
Q Consensus 367 rgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNr 417 (450)
+..|+.+.+..+...+... + ....+|+.+|++..-|..|+...
T Consensus 3 ~~~l~~~~~~~i~~~~~~g----~----s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 3 GSALSDTERAQLDVMKLLN----V----SLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp SCCCCHHHHHHHHHHHHTT----C----CHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHhhH
Confidence 3568887765444444431 2 25578999999999999998543
No 83
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=47.77 E-value=22 Score=27.91 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=32.1
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhh
Q 013045 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQR 418 (450)
Q Consensus 365 RKrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrR 418 (450)
+++++|+.+.+......+.. . + -...+|+.+|++...|..|....+
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~-g---~----s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHD-G---E----SKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHH-T---C----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHC-C---C----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34568998886555455433 1 1 255889999999999999985444
No 84
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=44.10 E-value=17 Score=26.26 Aligned_cols=50 Identities=14% Similarity=0.023 Sum_probs=38.7
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCC
Q 013045 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (450)
Q Consensus 368 gkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ 425 (450)
..||...+.+|...|... + .-.++|+..|++...|..+....|++.++-.
T Consensus 14 ~~L~~~~r~il~l~~~~g----~----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLLG----L----SYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp TSSCHHHHHHHHHHHTSC----C----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred HhCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 468999999998765442 2 2357899999999999999999999987654
No 85
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=40.69 E-value=12 Score=29.29 Aligned_cols=48 Identities=8% Similarity=0.155 Sum_probs=38.3
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 369 kLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
.||...+.+|.-.|...+ .-.++|+.+|++..-|..+....|++.++.
T Consensus 37 ~L~~~~r~vl~l~~~~g~--------s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW--------STAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC--------CHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 488999999977554422 245789999999999999999999988753
No 86
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=37.82 E-value=39 Score=31.94 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHhhhC
Q 013045 244 THYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTG 284 (450)
Q Consensus 244 eaYC~mL~kYkEEL~kP~~~~~~EA~~fc~~IEsQL~sL~~ 284 (450)
..|-.-|-....-|..+.+ ..|.+.+|+++-..|..+|+
T Consensus 82 l~YLkkLD~l~~~Lq~h~~--Lse~l~l~kqLs~sLh~mC~ 120 (204)
T 2jqq_A 82 LEYLKKLDEIYGSLRNHSQ--LTEALSLGKRLSKSLHEMCG 120 (204)
T ss_dssp HHHHHHHHHHHHTCSSSSH--HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHhC
Confidence 3577788888888888764 67999999999999999997
No 87
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=36.17 E-value=1.1e+02 Score=24.70 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhHH---------HhhhHHHHHHHHHHHHHHHHhhh
Q 013045 236 DKELDQFMTHYVLLLCSFKEQLQQH---------VRVHAMEAVMACWEIEQSLQSLT 283 (450)
Q Consensus 236 DPELDQFMeaYC~mL~kYkEEL~kP---------~~~~~~EA~~fc~~IEsQL~sL~ 283 (450)
.-|+|..-.+--+...||.+|+..- +++..++|.+.--.+|.++.+|.
T Consensus 20 ~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 20 EVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3577776666777788888887652 23455788888888999998886
No 88
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=33.32 E-value=30 Score=25.48 Aligned_cols=55 Identities=11% Similarity=0.123 Sum_probs=39.8
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCC
Q 013045 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (450)
Q Consensus 368 gkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~p 426 (450)
..||+..+.+|...|.-.....+ .-.++|+.+|++...|..+....+++.++...
T Consensus 4 ~~L~~~er~il~l~~~l~~~~g~----s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~ 58 (68)
T 2p7v_B 4 AGLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 58 (68)
T ss_dssp CCCCHHHHHHHHHHTTTTSSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCG
T ss_pred HcCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 35888999998776511000112 23578999999999999999999999987543
No 89
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=33.03 E-value=20 Score=29.40 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=36.7
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 369 kLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
.||+..+.+|. .|... | .-.++|+.+|++...|.++....|++.++.
T Consensus 109 ~L~~~~r~v~~-~~~~g----~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG----Y----SYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHTTT----C----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC----C----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 47888989998 33331 2 235789999999999999999999988753
No 90
>1sse_B AP-1 like transcription factor YAP1; disulfide bond, nuclear export signal, NES, redox- regulation, transcription activator; NMR {Saccharomyces cerevisiae} SCOP: g.78.1.1
Probab=33.00 E-value=38 Score=28.17 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=18.8
Q ss_pred CCCceeccCCCccchhhhHHHHHHHhhCCChH
Q 013045 156 SEGVVVESGADGVVNWQNARYKAEILSHPLYE 187 (450)
Q Consensus 156 ~~~~~~~~~~~~~~~~e~e~lKAkI~sHPlYp 187 (450)
.+.||. +..+.++.. ..+=.+|.+||+|.
T Consensus 20 ~~~vvp-s~~g~lL~c--~~iWd~I~shP~~~ 48 (86)
T 1sse_B 20 DNDVVP-SKEGSLLRC--SEIWDRITTHPKYS 48 (86)
T ss_dssp CCCSSC-CSSCCEECH--HHHHHHHHTCSCCS
T ss_pred cCeeee-CCCcceecH--HHHHHHHhcCcchh
Confidence 444554 444445544 45568999999998
No 91
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=31.68 E-value=38 Score=25.24 Aligned_cols=53 Identities=15% Similarity=0.006 Sum_probs=39.1
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc-CC
Q 013045 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW-HS 424 (450)
Q Consensus 368 gkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~k-K~ 424 (450)
..||+..+.+|...|.-.....+ .-.++|+.+|++...|..|....+++.+ ..
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~----s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~ 62 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLKYHE 62 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHhcccCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhH
Confidence 46899999999776641000112 2247899999999999999999999988 54
No 92
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=31.18 E-value=31 Score=26.88 Aligned_cols=55 Identities=13% Similarity=0.104 Sum_probs=40.3
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCC
Q 013045 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (450)
Q Consensus 368 gkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~p 426 (450)
..||...+.+|...|.-..... -.-..+|..+|++...|..+....+++.++...
T Consensus 17 ~~L~~~er~vl~l~~~l~~~~~----~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~ 71 (87)
T 1tty_A 17 KTLSPREAMVLRMRYGLLDGKP----KTLEEVGQYFNVTRERIRQIEVKALRKLRHPSR 71 (87)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSC----CCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBS
T ss_pred HhCCHHHHHHHHHHHccCCCCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999977664100011 223578999999999999999999999987543
No 93
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=28.29 E-value=96 Score=24.06 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=38.0
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCC
Q 013045 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (450)
Q Consensus 368 gkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ 425 (450)
..||...+.+|.-+ ..- |.. .++|+.+|++..-|.++....|++.+..+
T Consensus 28 ~~Lt~~e~~vl~l~-~~g----~s~----~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 76 (91)
T 2rnj_A 28 EMLTEREMEILLLI-AKG----YSN----QEIASASHITIKTVKTHVSNILSKLEVQD 76 (91)
T ss_dssp GGCCSHHHHHHHHH-HTT----CCT----THHHHHHTCCHHHHHHHHHHHHHHTTCCS
T ss_pred hcCCHHHHHHHHHH-HcC----CCH----HHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 35888898998764 331 222 37899999999999999999999987654
No 94
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=27.20 E-value=2e+02 Score=24.13 Aligned_cols=56 Identities=9% Similarity=0.031 Sum_probs=36.3
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCCHHHHHH-HHHHh------CCChhhhhhhhhhhhhhccCCC
Q 013045 367 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKAR-LVQET------GLQLKQINNWFINQRKRNWHSN 425 (450)
Q Consensus 367 rgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~-LA~~T------gLs~kQInNWFiNrRkR~kK~~ 425 (450)
+.+++.+....+..++.+ .|--+..+... |.+.. .++...|..|+...+..-.+.-
T Consensus 81 ~~~~~~~~~~~I~~~~~~---~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~~~ 143 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQ---NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLP 143 (159)
T ss_dssp CCCCCTTHHHHHHHHHHH---CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSCCC
T ss_pred CCCCCHHHHHHHHHHHHH---CccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCccCc
Confidence 456777778888888876 34445444332 33221 4899999999987776655543
No 95
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=27.11 E-value=75 Score=23.00 Aligned_cols=50 Identities=14% Similarity=0.054 Sum_probs=38.7
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCC
Q 013045 367 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (450)
Q Consensus 367 rgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ 425 (450)
...|+...+.+|..++.. + .-.++|+.+|++..-|..++...+++....+
T Consensus 9 ~~~L~~~e~~il~~~~~g-----~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 58 (74)
T 1fse_A 9 KPLLTKREREVFELLVQD-----K----TTKEIASELFISEKTVRNHISNAMQKLGVKG 58 (74)
T ss_dssp CCCCCHHHHHHHHHHTTT-----C----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCHHHHHHHHHHHcC-----C----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Confidence 457999999998774221 3 2357999999999999999999998887643
No 96
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=26.20 E-value=40 Score=25.22 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 013045 396 KARLVQETGLQLKQINNWFINQR 418 (450)
Q Consensus 396 K~~LA~~TgLs~kQInNWFiNrR 418 (450)
...||+.+|++...|..|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46899999999999999998765
No 97
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=26.00 E-value=29 Score=30.44 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=38.8
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccC
Q 013045 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (450)
Q Consensus 368 gkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK 423 (450)
..||...+.+|...|... | .-.++|+.+|++...|..+....|++.++
T Consensus 186 ~~L~~~~r~vl~l~~~~g----~----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFYEE----L----PAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TTSCHHHHHHHHHHHTSC----C----CHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHhcC----C----CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 358999999998766442 2 23479999999999999999999998875
No 98
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=25.87 E-value=41 Score=22.40 Aligned_cols=41 Identities=7% Similarity=0.154 Sum_probs=27.9
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 013045 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFIN 416 (450)
Q Consensus 368 gkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiN 416 (450)
.+++.+....+...+... + ....+|+.+|++..-|..|+..
T Consensus 4 ~~~~~~~~~~i~~l~~~g----~----s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 4 RAINKHEQEQISRLLEKG----H----PRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp CSSCTTHHHHHHHHHHTT----C----CHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCCHHHHHHHHHHHHcC----C----CHHHHHHHHCCCHHHHHHHHHH
Confidence 456666555554544431 1 2457899999999999999854
No 99
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=25.66 E-value=81 Score=26.94 Aligned_cols=53 Identities=8% Similarity=0.147 Sum_probs=38.2
Q ss_pred cCCCCCCChhHHHHHHHHH-HhcCCCCCCCHHHHHHHHH-Hh--CCChhhhhhhhhhhhh
Q 013045 364 KRRAGKLPGDTTSVLKSWW-QSHSKWPYPTEEDKARLVQ-ET--GLQLKQINNWFINQRK 419 (450)
Q Consensus 364 KRKrgkLpkea~~iLk~Wf-~~H~~~PYPSe~eK~~LA~-~T--gLs~kQInNWFiNrRk 419 (450)
+++|..|+-+++..|..|+ .. +|-.+..+....|. .+ +++...|..|..|+-.
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~---~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL---QNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS---SSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 5678899999999999988 45 55455443333222 77 7899999999987554
No 100
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=25.37 E-value=67 Score=25.42 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=39.5
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCCC
Q 013045 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (450)
Q Consensus 368 gkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~p 426 (450)
..||...+.+|.-.+.. | .-.++|+.+|++..-|.++....|++.+..+.
T Consensus 26 ~~Lt~~e~~vl~l~~~g-----~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 75 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEG-----L----TNKQIADRMFLAEKTVKNYVSRLLAKLGMERR 75 (95)
T ss_dssp -CCCHHHHHHHHHHHTT-----C----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred hcCCHHHHHHHHHHHcC-----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 35899999999875322 2 22579999999999999999999999987654
No 101
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=24.79 E-value=41 Score=23.66 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 013045 396 KARLVQETGLQLKQINNWFINQR 418 (450)
Q Consensus 396 K~~LA~~TgLs~kQInNWFiNrR 418 (450)
...||+.+|++...|..|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 45799999999999999997743
No 102
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=24.78 E-value=40 Score=23.53 Aligned_cols=23 Identities=17% Similarity=0.106 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 013045 396 KARLVQETGLQLKQINNWFINQR 418 (450)
Q Consensus 396 K~~LA~~TgLs~kQInNWFiNrR 418 (450)
...||+.+|++...|..|..+.+
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998753
No 103
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=24.76 E-value=38 Score=28.86 Aligned_cols=48 Identities=8% Similarity=0.043 Sum_probs=37.8
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCC
Q 013045 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (450)
Q Consensus 369 kLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~ 424 (450)
.||...+.+|.-.|... |+ -.++|+.+|++...|.++....|++.++.
T Consensus 140 ~L~~~~r~vl~l~~~~g----~s----~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 140 SLPEDLRMAITLRELDG----LS----YEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp HSCHHHHHHHHHHHTTC----CC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHcC----CC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 37888888887655442 22 24799999999999999999999998764
No 104
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=24.41 E-value=40 Score=23.98 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChhhhhhhhhhhhh
Q 013045 396 KARLVQETGLQLKQINNWFINQRK 419 (450)
Q Consensus 396 K~~LA~~TgLs~kQInNWFiNrRk 419 (450)
...||+.+|++...|..|..+.+.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 357999999999999999987543
No 105
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=23.89 E-value=46 Score=24.66 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=36.0
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCC
Q 013045 370 LPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (450)
Q Consensus 370 Lpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ 425 (450)
||+..+.+|.-++.. ++ -.++|+.+|++...|..++...+++.+..+
T Consensus 17 L~~~e~~vl~l~~~g-----~s----~~eIA~~l~is~~tV~~~~~r~~~kl~~~~ 63 (79)
T 1x3u_A 17 LSERERQVLSAVVAG-----LP----NKSIAYDLDISPRTVEVHRANVMAKMKAKS 63 (79)
T ss_dssp HCHHHHHHHHHHTTT-----CC----HHHHHHHTTSCHHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHHcC-----CC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 677777888664221 22 247999999999999999999999988754
No 106
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=23.81 E-value=1.3e+02 Score=23.48 Aligned_cols=41 Identities=10% Similarity=0.027 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 013045 374 TTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQ 417 (450)
Q Consensus 374 a~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNr 417 (450)
....+..|...|+..|-++. ..||+.+|++...+...|.-.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~---~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTL---SVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCH---HHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCH---HHHHHHHCcCHHHHHHHHHHH
Confidence 45667788888876654554 457888888888888777543
No 107
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=23.74 E-value=58 Score=25.09 Aligned_cols=49 Identities=10% Similarity=0.058 Sum_probs=38.0
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccCCC
Q 013045 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (450)
Q Consensus 368 gkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK~~ 425 (450)
..|+...+.+|.-++.. + .-.++|+.+|++..-|.++....+++.+..+
T Consensus 20 ~~Lt~~e~~vl~l~~~g-----~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 20 NQLTPRERDILKLIAQG-----L----PNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp GGSCHHHHHHHHHHTTT-----C----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred ccCCHHHHHHHHHHHcC-----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 35888888888774221 2 3457899999999999999999999987654
No 108
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=22.72 E-value=26 Score=29.69 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=37.8
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccC
Q 013045 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (450)
Q Consensus 369 kLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK 423 (450)
.||...+.+|.-.|...+ +| .++|+.+|++...|.++....|++.++
T Consensus 135 ~L~~~~r~vl~l~~~~g~--s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGDL--TH------RELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp TSCHHHHHHHHHHHHSCC--SS------CCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC--CH------HHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 489999999977655533 33 268999999999999999999998865
No 109
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=22.51 E-value=1.6e+02 Score=23.19 Aligned_cols=52 Identities=6% Similarity=0.155 Sum_probs=33.4
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHhCCChhhhhhhhhhhhh
Q 013045 367 AGKLPGDTTSVLKSWWQSHSKWPYPTE-EDKARLVQETGLQLKQINNWFINQRK 419 (450)
Q Consensus 367 rgkLpkea~~iLk~Wf~~H~~~PYPSe-~eK~~LA~~TgLs~kQInNWFiNrRk 419 (450)
+++|+.+.+...-..+..+. .=|++. .....+|..+|++...|.+|..-.+.
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~-~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~~ 56 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQ-GEYDSQWATICSIAPKIGCTPETLRVWVRQHER 56 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhcc-cccccccccHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 45788887654444433210 002332 35678999999999999999765443
No 110
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=22.05 E-value=49 Score=23.87 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 013045 396 KARLVQETGLQLKQINNWFINQR 418 (450)
Q Consensus 396 K~~LA~~TgLs~kQInNWFiNrR 418 (450)
...||+.+|++...|..|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999987743
No 111
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=22.03 E-value=45 Score=27.77 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=37.9
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccC
Q 013045 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (450)
Q Consensus 369 kLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiNrRkR~kK 423 (450)
.||+..+.++...|.... .-.++|+.+|++..-|..|....|++.++
T Consensus 22 ~L~~~~r~vl~l~y~~g~--------s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY--------SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC--------CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 489999999877655422 23578999999999999999999988765
No 112
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=21.75 E-value=51 Score=23.85 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 013045 396 KARLVQETGLQLKQINNWFINQR 418 (450)
Q Consensus 396 K~~LA~~TgLs~kQInNWFiNrR 418 (450)
...||+.+|++...|..|..+.+
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998754
No 113
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=21.68 E-value=2.6e+02 Score=23.64 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHH---------HhhhHHHHHHHHHHHHHHHHhhh
Q 013045 237 KELDQFMTHYVLLLCSFKEQLQQH---------VRVHAMEAVMACWEIEQSLQSLT 283 (450)
Q Consensus 237 PELDQFMeaYC~mL~kYkEEL~kP---------~~~~~~EA~~fc~~IEsQL~sL~ 283 (450)
-|+|..-.+.-+...||.+|+..- +++..+++.+.--.+|.++.+|.
T Consensus 41 leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~ 96 (119)
T 3ol1_A 41 VERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 96 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 344444444445555666665442 22344566666667888888887
No 114
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=20.91 E-value=49 Score=22.52 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=17.4
Q ss_pred HHHHHhhCCChHHHHHHHHhhh
Q 013045 176 YKAEILSHPLYEQLLSAHVACL 197 (450)
Q Consensus 176 lKAkI~sHPlYp~LL~AyidCl 197 (450)
+-.||.+-|||.-||+|--..+
T Consensus 5 lipkiissplfktllsavgsal 26 (33)
T 1xc0_A 5 LIPKIISSPLFKTLLSAVGSAL 26 (33)
T ss_dssp SHHHHTTTTTHHHHHHHHHHHT
T ss_pred hhhHHHccHHHHHHHHHHHHHh
Confidence 3468999999999998865443
No 115
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=20.90 E-value=53 Score=23.79 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 013045 396 KARLVQETGLQLKQINNWFINQR 418 (450)
Q Consensus 396 K~~LA~~TgLs~kQInNWFiNrR 418 (450)
...||+.+|++...|..|..+.+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 35799999999999999997653
No 116
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=20.69 E-value=1.2e+02 Score=22.56 Aligned_cols=38 Identities=8% Similarity=0.074 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 013045 376 SVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFIN 416 (450)
Q Consensus 376 ~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQInNWFiN 416 (450)
..+..|..-.. .|+...-..||..+|++...+.-|+.-
T Consensus 40 ~~is~~e~g~~---~~~~~~~~~ia~~l~v~~~~l~~~l~~ 77 (80)
T 3kz3_A 40 SAVAALFNGIN---ALNAYNAALLAKILKVSVEEFSPSIAR 77 (80)
T ss_dssp HHHHHHHTTSS---CCCHHHHHHHHHHHTSCGGGTCHHHHH
T ss_pred HHHHHHHcCCC---CCCHHHHHHHHHHhCCCHHHHhHHHHh
Confidence 44556654322 478899999999999999999888753
No 117
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=20.67 E-value=54 Score=23.13 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 013045 396 KARLVQETGLQLKQINNWFINQR 418 (450)
Q Consensus 396 K~~LA~~TgLs~kQInNWFiNrR 418 (450)
...||+.+|++...|..|..+.+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999987754
No 118
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=20.21 E-value=68 Score=23.91 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 013045 396 KARLVQETGLQLKQINNWFINQR 418 (450)
Q Consensus 396 K~~LA~~TgLs~kQInNWFiNrR 418 (450)
...||+.+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 35799999999999999998754
Done!