Query 013046
Match_columns 450
No_of_seqs 159 out of 291
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 23:51:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013046.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013046hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4398 Uncharacterized protei 100.0 1E-50 2.2E-55 396.2 20.1 254 127-445 126-388 (389)
2 COG3287 Uncharacterized conser 99.9 1E-22 2.2E-27 208.4 17.2 245 125-442 128-379 (379)
3 PF10442 FIST_C: FIST C domain 99.8 1.8E-18 3.9E-23 153.0 10.0 98 288-411 37-135 (136)
4 PF08495 FIST: FIST N domain; 99.6 3.3E-14 7.2E-19 131.8 13.2 99 126-251 97-198 (198)
5 PF08495 FIST: FIST N domain; 66.0 24 0.00051 32.4 7.2 37 126-163 2-39 (198)
6 COG3287 Uncharacterized conser 40.1 51 0.0011 35.1 5.3 44 363-411 29-72 (379)
7 PF12000 Glyco_trans_4_3: Gkyc 34.0 1.5E+02 0.0032 28.0 7.0 66 313-406 32-97 (171)
8 PF05662 YadA_stalk: Coiled st 22.7 43 0.00094 21.3 0.8 15 19-33 3-17 (21)
9 COG1348 NifH Nitrogenase subun 20.0 6.5E+02 0.014 25.7 8.8 41 365-411 177-217 (278)
10 COG1984 DUR1 Allophanate hydro 17.1 7.4E+02 0.016 25.9 8.8 23 307-329 272-294 (314)
No 1
>COG4398 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1e-50 Score=396.19 Aligned_cols=254 Identities=24% Similarity=0.318 Sum_probs=220.2
Q ss_pred cEEEEecCC-CCChhHHHHHhhhhcCCCceeeccc-ccccccccCCCCcceeCCCceecCeEEEEEecCCCCCCCCCCeE
Q 013046 127 VGIIMFGKE-DMDQKPIIEKLDYAMSMNTVFVGDE-RSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQ 204 (450)
Q Consensus 127 ~gii~fgd~-~~d~~~ll~gL~~al~~~~vI~Gg~-agd~~f~~g~~sr~~~~~~~~~~gaVal~f~~d~~~~~~~G~i~ 204 (450)
...|++.|+ ++....++++|+.++|..+ ++||. +|. +.+.+.|.++..+.+.++.|||.+ .| ++
T Consensus 126 ~~~ilL~dp~t~~~n~li~~l~~~~Pgtt-vvGG~~Sgg---~~~G~~~Lf~~~~~~~~G~vGv~L---------~G-i~ 191 (389)
T COG4398 126 DLHLLLPDPYTFPSNLLIEHLNTDLPGTT-VVGGVVSGG---RRRGDTRLFRDHDVLTSGVVGVRL---------PG-IR 191 (389)
T ss_pred CceEEccCCcccchHHHhhccCcCCCCce-EEccEeecC---ccCCceEEeecCCcccCceeEEee---------cc-ce
Confidence 355688999 9999999999999999764 55664 443 223344444444588888999999 67 99
Q ss_pred EEEEeccCCeeeCCCeEEEEeccccccCceEEcccccCccccccCchHhhhhh-------HhhccCCCcceeEEEEeccc
Q 013046 205 FHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHID-------QLENRFPQVELYVGVTKRRK 277 (450)
Q Consensus 205 ~~~~vsqGcrPiGp~~~VT~v~~T~segNvll~l~~~g~~~eLDg~pAL~~L~-------e~~~~l~~~~L~iGva~~~~ 277 (450)
..+.|+|||||||.+|.|| ++++|+| .||+|+|-|..|. +.+++|.+++|++|++++|.
T Consensus 192 l~~vVsQGCRPIGeP~iVt-----~a~~niI---------tEl~gr~PL~~Lr~ii~~lsp~er~L~~~~L~iGi~~DE~ 257 (389)
T COG4398 192 LVPVVSQGCRPIGEPYIVT-----GADGNII---------TELGGRPPLQRLREIVEGLSPDERALVSHGLQIGIVVDEH 257 (389)
T ss_pred ecchhccCcccCCCceEee-----ccCceeE---------eecCCCChHHHHHHHhhccChhhHHHHhcCceEEEEehhh
Confidence 9999999999999999996 9999999 8999999887555 44788999999999999998
Q ss_pred ccCCCCCceeEEEEEEecCCCCCceeeEeeccCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCcccccccc
Q 013046 278 CSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVA 357 (450)
Q Consensus 278 ~~~~~~~~~~vR~ll~~d~~~gs~e~~l~~g~~I~~G~~vqf~~RD~~aA~~dl~~~a~~lr~l~~~~~~k~~l~~~~~~ 357 (450)
+....+++|++|.+++.|+.+|+ |.+++-|++||++||++||++++..||+-..+.. ..++
T Consensus 258 ~~~~~qGDFlIR~lLG~DPs~Ga----IaIgd~Vr~G~~lQF~~RD~~as~~dL~~l~er~---~~e~------------ 318 (389)
T COG4398 258 LAAPGQGDFLIRGLLGADPSTGA----IAIGEVVRVGATLQFQVRDAAAADKDLRLLVERA---AAEL------------ 318 (389)
T ss_pred hcCCCCCceEeeeccccCCCCCc----eeecceeccCcEEEEEEcccccchhHHHHHHHHH---HhhC------------
Confidence 77777899999999999999999 9999999999999999999999998777655544 2222
Q ss_pred CccCCCceeEEEEEEeCCCCcCCCCCCccchhhHHhhCCCCceeeeecccccCCCCCccCCCCCCCCCCcccccccccce
Q 013046 358 NSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYST 437 (450)
Q Consensus 358 ~~~~~~~p~gaLlFSC~GRG~~lfg~~~~E~~~v~e~lp~vPlaGFy~~GEIgP~~~~~~~g~~~~~~~~~~~~LH~yT~ 437 (450)
...++|||||||+|||..|||.+|+|+++|.+.||++|++||||+||||| +++ +|+|||||+
T Consensus 319 ----~~~avGaLmFsC~GRG~~m~G~p~~Ds~~~~~~~~gipl~GFF~~GEIGp-----V~g---------r~~LHG~Ts 380 (389)
T COG4398 319 ----PGRAVGALLFTCNGRGRRMFGVPDHDASTIEELLGGIPLAGFFAAGEIGP-----VAG---------RNALHGFTA 380 (389)
T ss_pred ----CCccceeEEEEecCccccccCCCCccHHHHHHHhCCCcccceeecCcccc-----ccc---------hhhhhccce
Confidence 35789999999999999999999999999999999999999999999999 999 999999999
Q ss_pred eEeeeecC
Q 013046 438 AYLVISYS 445 (450)
Q Consensus 438 v~~l~s~~ 445 (450)
++++|.++
T Consensus 381 ~~ai~~~~ 388 (389)
T COG4398 381 SMALFVDD 388 (389)
T ss_pred eeEEEeec
Confidence 99999875
No 2
>COG3287 Uncharacterized conserved protein [Function unknown]
Probab=99.89 E-value=1e-22 Score=208.44 Aligned_cols=245 Identities=16% Similarity=0.190 Sum_probs=186.2
Q ss_pred CCcEEEEecCC-CCChhHHHHHhhhhcCCCceeecccccc-cccccCCCCcceeCCCceecC-eEEEEEecCCCCCCCCC
Q 013046 125 SPVGIIMFGKE-DMDQKPIIEKLDYAMSMNTVFVGDERSR-FAYRSGDDLRNVCGNPAFISD-AVALVFASDKDKPHGTG 201 (450)
Q Consensus 125 ~p~gii~fgd~-~~d~~~ll~gL~~al~~~~vI~Gg~agd-~~f~~g~~sr~~~~~~~~~~g-aVal~f~~d~~~~~~~G 201 (450)
.+.-.|.|-|+ +.-.+.+++++..+....+||.||.+|| +.|.++ .++.++.+.++ |+-++| ++
T Consensus 128 r~~~~l~f~dgl~~~ee~l~~~~~~~~~~~iPi~GGsAaD~~~~e~t----~v~~~g~v~~~aavi~l~---------~t 194 (379)
T COG3287 128 RPVLALTFIDGLSTSEEVLLDGAVLAALETIPIFGGSAADDLEFERT----YVFDEGEVHEDAAVILLF---------GT 194 (379)
T ss_pred CceEEEEEeccCCcchhhhhhhhhcccccceeeeccccCCCCccceE----EEEEccccccCceEEEEe---------cc
Confidence 34777899999 4446667776777778889999999999 799876 66778788888 555556 99
Q ss_pred CeEEEEEeccCCeeeCCCeEEEEeccccccCceEEcccccCccccccCchHhhhhhHhh---ccCCC-cceeEEEEeccc
Q 013046 202 EIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLE---NRFPQ-VELYVGVTKRRK 277 (450)
Q Consensus 202 ~i~~~~~vsqGcrPiGp~~~VT~v~~T~segNvll~l~~~g~~~eLDg~pAL~~L~e~~---~~l~~-~~L~iGva~~~~ 277 (450)
.+.|+++.++||.|.+.+++|| |+++|+| +||||+||.+.+.+.- ++++. ...-.++...+.
T Consensus 195 ~l~f~~~~~~g~~Pt~~~~~VT-----ka~~~vV---------~EiDgePA~e~Y~e~vg~~e~l~~~~~~~~pl~~~~~ 260 (379)
T COG3287 195 QLKFGHGFAHGFVPTDKTGVVT-----KADGDVV---------YEIDGEPAAEEYAEVVGAVEELDPEMFIPNPLGVRDL 260 (379)
T ss_pred eEEeecccccceEEccceEEEE-----eecCcEE---------EEeCCCcHHHHHHHHhCchhhcChhHhcccceEEEeC
Confidence 9999999999999999999996 8899999 9999999999555442 34432 222234433331
Q ss_pred ccCCCCCceeEEEEEEecCCCCCceeeEeeccCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCcccccccc
Q 013046 278 CSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVA 357 (450)
Q Consensus 278 ~~~~~~~~~~vR~ll~~d~~~gs~e~~l~~g~~I~~G~~vqf~~RD~~aA~~dl~~~a~~lr~l~~~~~~k~~l~~~~~~ 357 (450)
...+++|.+.++|++++. +.+-..++.|..++++.... ...++++ .++....++
T Consensus 261 -----~~~y~vr~p~~~~e~~~~----~f~~~~i~~~v~lr~~~~~~--~~~~~e~---~~~~a~~~~------------ 314 (379)
T COG3287 261 -----GPLYYVRAPQFVDEEGGL----IFLSAAIPLGVVLRLGETGG--IERVTER---ALRRAFEDL------------ 314 (379)
T ss_pred -----CCcEEEeCcceeccccce----EEeeccCCCccEEEeecCCc--ccHHHHH---HHHHHHhhc------------
Confidence 467999999999988554 44555999999999987555 3322222 222223222
Q ss_pred CccCCCceeEEEEEEeCCCCcCCCCCCccchhhHHhhCCCCceeeeecccccCCCCCccCCCCCCCCCCcccccccccce
Q 013046 358 NSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYST 437 (450)
Q Consensus 358 ~~~~~~~p~gaLlFSC~GRG~~lfg~~~~E~~~v~e~lp~vPlaGFy~~GEIgP~~~~~~~g~~~~~~~~~~~~LH~yT~ 437 (450)
++++.+-|.|+|++| .++-+.+.+.+.+++.+|.=|++|||||||++|. .+ .+.-||+|.
T Consensus 315 ----~~~~~~vl~f~C~~R--~l~~~~~~~~~~~~e~l~~~~~vGf~tyGE~~~~-----~g---------~~~h~Nqtf 374 (379)
T COG3287 315 ----PKAPALVLVFDCALR--RLFLDTDKERQPLKEQLPEDPCVGFNTYGEQGPI-----TG---------ENVHHNQTF 374 (379)
T ss_pred ----cCCCceEEEEehhhh--hhhhhhhhhhhHHHHhcccCceeccccccccccc-----cc---------cceeeeeEE
Confidence 234899999999999 6777999999999999996699999999999993 35 588899998
Q ss_pred eEeee
Q 013046 438 AYLVI 442 (450)
Q Consensus 438 v~~l~ 442 (450)
+-..|
T Consensus 375 ~~v~f 379 (379)
T COG3287 375 VGVAF 379 (379)
T ss_pred EEEeC
Confidence 76543
No 3
>PF10442 FIST_C: FIST C domain; InterPro: IPR019494 This entry represents a novel sensory domain, designated FIST C (short for F-box and intracellular signal transduction, C-terminal), which is present in signal transduction proteins from bacteria, archaea and eukaryotes. The chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=99.76 E-value=1.8e-18 Score=153.01 Aligned_cols=98 Identities=23% Similarity=0.308 Sum_probs=85.6
Q ss_pred EEEEEEecCCCCCceeeEeeccCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccCccCCCceeE
Q 013046 288 ITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLG 367 (450)
Q Consensus 288 vR~ll~~d~~~gs~e~~l~~g~~I~~G~~vqf~~RD~~aA~~dl~~~a~~lr~l~~~~~~k~~l~~~~~~~~~~~~~p~g 367 (450)
+|.++.+|+.+|+ |+++..|++|+.||||.+|++.+.++++++++++ . ..+|.+
T Consensus 37 ir~~~~~~~~~gs----l~~~~~v~eG~~v~l~~~~~~~~~~~~~~~~~~~-------~---------------~~~p~~ 90 (136)
T PF10442_consen 37 IRSPLAIDPEDGS----LTFAGDVPEGSEVQLMEGDPEDIIESAEEALEKA-------P---------------GPPPEG 90 (136)
T ss_pred EeeeeEEcCCCCE----EEEeeecCCCCEEEEEcCCHHHHHHHHHHHHHhh-------c---------------CCCceE
Confidence 9999999998999 9999999999999999999999997665544433 1 357999
Q ss_pred EEEEEeCCCCcCCCCCCccchhhHHhhCCC-CceeeeecccccCC
Q 013046 368 GFIFSCCGRGNSFFGGLNVDSFPFFENFPS-APLAGIFCGGEIGR 411 (450)
Q Consensus 368 aLlFSC~GRG~~lfg~~~~E~~~v~e~lp~-vPlaGFy~~GEIgP 411 (450)
+|+|+|+||...|....+.|++.+++.+|+ +|++||||||||+|
T Consensus 91 ~l~f~C~~R~~~l~~~~~~e~~~~~~~~~~~~p~~Gf~t~GEi~~ 135 (136)
T PF10442_consen 91 ALIFSCIGRRLFLGERFDEELEAFQEILGGDAPFIGFYTYGEIGP 135 (136)
T ss_pred EEEEECCCCHHHhCcchHHHHHHHHHHhCCCCCEEEEcccccccc
Confidence 999999999555544788999999999995 99999999999998
No 4
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=99.56 E-value=3.3e-14 Score=131.76 Aligned_cols=99 Identities=22% Similarity=0.361 Sum_probs=85.9
Q ss_pred CcEEEEecCC-CCChhHHHHHhhhhcCCCceeecccccc-cccccCCCCcceeCCCceecC-eEEEEEecCCCCCCCCCC
Q 013046 126 PVGIIMFGKE-DMDQKPIIEKLDYAMSMNTVFVGDERSR-FAYRSGDDLRNVCGNPAFISD-AVALVFASDKDKPHGTGE 202 (450)
Q Consensus 126 p~gii~fgd~-~~d~~~ll~gL~~al~~~~vI~Gg~agd-~~f~~g~~sr~~~~~~~~~~g-aVal~f~~d~~~~~~~G~ 202 (450)
...+++|.|+ +.+.++++++|.......++|+||.+|+ ..|.++ .++.++.+.++ +|+++| .++
T Consensus 97 ~~~~l~~~d~~~~~~~~~l~~l~~~~~~~~~i~GG~a~~~~~~~~~----~v~~~~~~~~~g~v~~~~---------~~~ 163 (198)
T PF08495_consen 97 SPFLLLFADGLSSSEEELLEGLYSSVGPDIPIFGGSAGDNLDFERT----YVFANGQVYSDGAVVVAF---------SGS 163 (198)
T ss_pred CcEEEEEeCCCCcCHHHHHHHHHHhcCCCceEEEEECCCCCcCCce----EEEEeeeeccCcEEEEEE---------cCC
Confidence 4678899998 8889999999988889999999999998 556554 66654455555 999999 679
Q ss_pred eEEEEEeccCCeeeCCCeEEEEeccccccCceEEcccccCccccccCch
Q 013046 203 IQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQ 251 (450)
Q Consensus 203 i~~~~~vsqGcrPiGp~~~VT~v~~T~segNvll~l~~~g~~~eLDg~p 251 (450)
+++.+.+.|||+|+|.+++|| ++++|+| +|||+||
T Consensus 164 l~~~~~~~~g~~p~g~~~~VT-----~a~~~~I---------~eld~~P 198 (198)
T PF08495_consen 164 LKIDSFVSHGWEPIGKPMTVT-----KAEGNII---------YELDGRP 198 (198)
T ss_pred ceEEEEEecCeEeCCCCEEEE-----EecCCEE---------EEECCcC
Confidence 999999999999999999996 8899999 9999997
No 5
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=66.03 E-value=24 Score=32.45 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=31.4
Q ss_pred CcEEEEecCCCCChhH-HHHHhhhhcCCCceeecccccc
Q 013046 126 PVGIIMFGKEDMDQKP-IIEKLDYAMSMNTVFVGDERSR 163 (450)
Q Consensus 126 p~gii~fgd~~~d~~~-ll~gL~~al~~~~vI~Gg~agd 163 (450)
|..+++|.....+.+. +++.|++.+| +..++|+..+.
T Consensus 2 p~lvi~f~s~~~~~~~~i~~~l~~~~p-~~~iiG~st~g 39 (198)
T PF08495_consen 2 PDLVILFCSPEYDEEAKILEALRERLP-DAPIIGCSTAG 39 (198)
T ss_pred CEEEEEEecchhhhhHHHHHHHHHHCC-CCcEEEEccCc
Confidence 6788999998777777 9999999999 77888887554
No 6
>COG3287 Uncharacterized conserved protein [Function unknown]
Probab=40.07 E-value=51 Score=35.13 Aligned_cols=44 Identities=23% Similarity=0.137 Sum_probs=34.8
Q ss_pred CceeEEEEEEeCCCCcCCCCCCccchhhHHhhCCCCceeeeecccccCC
Q 013046 363 KEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGR 411 (450)
Q Consensus 363 ~~p~gaLlFSC~GRG~~lfg~~~~E~~~v~e~lp~vPlaGFy~~GEIgP 411 (450)
.++-.+++|+|.-|=. ...=++++++.+|+++++|.=|.|||.|
T Consensus 29 ~~~~~~~ifF~~~~~~-----~~~l~~~l~~~~pg~~liGCSTaGeitp 72 (379)
T COG3287 29 DRSDFVLIFFSPERDE-----HVQLASALKQAFPGICLIGCSTAGEITP 72 (379)
T ss_pred CCCCeEEEEecccccc-----HHHHHHHHHhhCCCCeEeccccCceEcc
Confidence 4567889888865532 1134689999999999999999999997
No 7
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=34.00 E-value=1.5e+02 Score=28.05 Aligned_cols=66 Identities=26% Similarity=0.312 Sum_probs=43.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccCccCCCceeEEEEEEeCCCCcCCCCCCccchhhHH
Q 013046 313 TGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFF 392 (450)
Q Consensus 313 ~G~~vqf~~RD~~aA~~dl~~~a~~lr~l~~~~~~k~~l~~~~~~~~~~~~~p~gaLlFSC~GRG~~lfg~~~~E~~~v~ 392 (450)
+......+.++.+++..--+.+++.+++|+++ +..|- +++.=.|=|..|| ++
T Consensus 32 ~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~-----------------Gf~PD--vI~~H~GWGe~Lf---------lk 83 (171)
T PF12000_consen 32 PTPGTHPYVRDFEAAVLRGQAVARAARQLRAQ-----------------GFVPD--VIIAHPGWGETLF---------LK 83 (171)
T ss_pred CCCCCCcccccHHHHHHHHHHHHHHHHHHHHc-----------------CCCCC--EEEEcCCcchhhh---------HH
Confidence 34555667888888775444455555555532 33443 5666678886665 89
Q ss_pred hhCCCCceeeeecc
Q 013046 393 ENFPSAPLAGIFCG 406 (450)
Q Consensus 393 e~lp~vPlaGFy~~ 406 (450)
+.||++|+++++=.
T Consensus 84 dv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 84 DVFPDAPLIGYFEF 97 (171)
T ss_pred HhCCCCcEEEEEEE
Confidence 99999999997643
No 8
>PF05662 YadA_stalk: Coiled stalk of trimeric autotransporter adhesin; InterPro: IPR008635 This short motif is found in invasins and haemagglutinins, normally associated with the Hep_Hag repeat (IPR008640 from INTERPRO).; GO: 0009405 pathogenesis, 0019867 outer membrane; PDB: 3NTN_A 3PR7_A 1P9H_A 3D9X_A 3LAA_A 3LA9_A 3EMO_C.
Probab=22.69 E-value=43 Score=21.32 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=9.9
Q ss_pred EEEeecccccccccc
Q 013046 19 ILSVVHGVMGRDALT 33 (450)
Q Consensus 19 ~~~~~~~~~~~~~~~ 33 (450)
|++|+.|.-..|||+
T Consensus 3 ItnVa~G~~~tDAVN 17 (21)
T PF05662_consen 3 ITNVADGTNDTDAVN 17 (21)
T ss_dssp EESE---TTTTSB-B
T ss_pred ceeecCCCCCcccee
Confidence 899999999999986
No 9
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=19.96 E-value=6.5e+02 Score=25.70 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=26.5
Q ss_pred eeEEEEEEeCCCCcCCCCCCccchhhHHhhCCCCceeeeecccccCC
Q 013046 365 VLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGR 411 (450)
Q Consensus 365 p~gaLlFSC~GRG~~lfg~~~~E~~~v~e~lp~vPlaGFy~~GEIgP 411 (450)
-.++++ |+.|+. ....+=++.|.+.+ +.|+++|-=.-+|-.
T Consensus 177 rLgGiI--cNsr~~---~~e~e~v~~fa~~i-gt~li~~vPr~~ivq 217 (278)
T COG1348 177 RLGGII--CNSRSV---DRERELVEAFAERL-GTQLIHFVPRDNIVQ 217 (278)
T ss_pred ceeeEE--ecCCCc---ccHHHHHHHHHHHh-CCceEeeccchHHHH
Confidence 367776 666772 23344566777777 788888876665543
No 10
>COG1984 DUR1 Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]
Probab=17.10 E-value=7.4e+02 Score=25.92 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=19.7
Q ss_pred eccCCCCCCEEEEEcCCHHHHHH
Q 013046 307 DGVGIKTGDYFQFYQPDHNAALA 329 (450)
Q Consensus 307 ~g~~I~~G~~vqf~~RD~~aA~~ 329 (450)
-.+.+++|++|+|..-+.++|.+
T Consensus 272 ~lAQ~~pG~~vrF~~~~~~ea~~ 294 (314)
T COG1984 272 KLAQIRPGSKVRFVPISLEEALA 294 (314)
T ss_pred HHhccCCCCeEEEEECCHHHHHH
Confidence 34568999999999999999884
Done!