Query 013046
Match_columns 450
No_of_seqs 159 out of 291
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 03:12:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qip_A Protein of unknown func 8.8 1.7E+02 0.006 25.3 2.6 30 128-159 112-141 (165)
2 2fcj_A Small toprim domain pro 7.4 2E+02 0.007 24.4 2.2 29 125-153 49-77 (119)
3 3gxh_A Putative phosphatase (D 6.1 2.2E+02 0.0076 24.2 1.9 32 3-38 87-118 (157)
4 3aek_B Light-independent proto 5.5 2E+02 0.0068 30.0 1.4 36 2-37 74-112 (525)
5 2hiy_A Hypothetical protein; C 5.5 2.6E+02 0.0087 25.2 1.9 19 3-21 62-80 (183)
6 4h3d_A 3-dehydroquinate dehydr 5.0 3.3E+02 0.011 25.6 2.4 43 392-448 196-238 (258)
7 2zjd_A Microtubule-associated 4.9 2.3E+02 0.0078 24.5 1.1 19 6-24 26-44 (130)
8 1jgn_B PAIP2, polyadenylate-bi 4.8 2.1E+02 0.0073 17.9 0.6 11 68-78 13-23 (26)
9 3tjy_A Effector protein hopab3 4.7 1.1E+02 0.0039 24.9 -0.9 28 384-411 40-67 (94)
10 3hgl_A Effector protein hopab2 4.7 1.1E+02 0.0039 24.6 -0.9 26 385-410 43-68 (85)
No 1
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=8.82 E-value=1.7e+02 Score=25.29 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=22.5
Q ss_pred EEEEecCCCCChhHHHHHhhhhcCCCceeecc
Q 013046 128 GIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGD 159 (450)
Q Consensus 128 gii~fgd~~~d~~~ll~gL~~al~~~~vI~Gg 159 (450)
-||+-||+ |..|+++.|++.++..+.++|-
T Consensus 112 ~vLvSgD~--DF~plv~~lr~~~G~~V~v~g~ 141 (165)
T 2qip_A 112 VILVSGDG--DFSLLVERIQQRYNKKVTVYGV 141 (165)
T ss_dssp EEEECCCG--GGHHHHHHHHHHHCCEEEEEEC
T ss_pred EEEEECCh--hHHHHHHHHHHHcCcEEEEEeC
Confidence 34444444 7999999999878888877773
No 2
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=7.35 E-value=2e+02 Score=24.39 Aligned_cols=29 Identities=3% Similarity=0.106 Sum_probs=25.9
Q ss_pred CCcEEEEecCCCCChhHHHHHhhhhcCCC
Q 013046 125 SPVGIIMFGKEDMDQKPIIEKLDYAMSMN 153 (450)
Q Consensus 125 ~p~gii~fgd~~~d~~~ll~gL~~al~~~ 153 (450)
.-++||+|-|+...|+.+-+.|...+|..
T Consensus 49 ~~r~VIi~TD~D~~GekIRk~i~~~lp~~ 77 (119)
T 2fcj_A 49 EGYDVYLLADADEAGEKLRRQFRRMFPEA 77 (119)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHCTTS
T ss_pred cCCCEEEEECCCccHHHHHHHHHHHCCCC
Confidence 35899999999999999999999999864
No 3
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Probab=6.14 E-value=2.2e+02 Score=24.22 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=20.9
Q ss_pred hhhHHHHHhhCCCCcEEEEeeccccccccccchhhh
Q 013046 3 RTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFRE 38 (450)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (450)
+..+.+.+++|. ||.|+|+.| . |.+.--....
T Consensus 87 ~~~~~i~~~~G~--dVLVnnAgg-~-r~~~l~~~~~ 118 (157)
T 3gxh_A 87 AFFAAMDQHKGK--DVLVHCLAN-Y-RASAFAYLYQ 118 (157)
T ss_dssp HHHHHHHHTTTS--CEEEECSBS-H-HHHHHHHHHH
T ss_pred HHHHHHHhcCCC--CEEEECCCC-C-CHHHHHHHHH
Confidence 345667778887 999999965 3 4444334443
No 4
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=5.53 E-value=2e+02 Score=30.04 Aligned_cols=36 Identities=8% Similarity=0.189 Sum_probs=25.9
Q ss_pred chhhHHHHHhhCCC-CcEEEEeeccccccc--cccchhh
Q 013046 2 RRTLDFLVKHLGLR-TPIILSVVHGVMGRD--ALTDEFR 37 (450)
Q Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~ 37 (450)
.+++.-+.+++--+ |-|+.||.+++||-| ++..|++
T Consensus 74 ~~aI~~~~~~~~P~~I~V~tTC~~elIGdDi~~v~~~~~ 112 (525)
T 3aek_B 74 KDALAAAHARYKPQAMAVALTCTAELLQDDPNGISRALN 112 (525)
T ss_dssp HHHHHHHHHHHCCSEEEEEECTTGGGSCCCHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCEEEEECCcHHHHhcccHHHHHHHhc
Confidence 34555566666555 889999999999988 4555554
No 5
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=5.53 E-value=2.6e+02 Score=25.20 Aligned_cols=19 Identities=16% Similarity=0.203 Sum_probs=15.6
Q ss_pred hhhHHHHHhhCCCCcEEEE
Q 013046 3 RTLDFLVKHLGLRTPIILS 21 (450)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (450)
+..+.|.+++|+.+||||=
T Consensus 62 ~ie~~l~~~fg~~v~v~vr 80 (183)
T 2hiy_A 62 KLETFFAVHYPFIQSFSLL 80 (183)
T ss_dssp HHHHHHHHHCTTCCCCEEE
T ss_pred HHHHHHHHhcCCCCCEEEe
Confidence 4567889999999999873
No 6
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=4.96 E-value=3.3e+02 Score=25.63 Aligned_cols=43 Identities=12% Similarity=0.192 Sum_probs=25.1
Q ss_pred HhhCCCCceeeeecccccCCCCCccCCCCCCCCCCcccccccccceeEeeeecCCCC
Q 013046 392 FENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAP 448 (450)
Q Consensus 392 ~e~lp~vPlaGFy~~GEIgP~~~~~~~g~~~~~~~~~~~~LH~yT~v~~l~s~~p~~ 448 (450)
++..++.|+++ +|.||.|. +.. . .+.+.|-..+++.+.+..+|
T Consensus 196 ~~~~~~~P~I~-~~MG~~G~-----~SR-------i-~~~~fGS~lTf~~~~~~sAP 238 (258)
T 4h3d_A 196 FKIYADRPIIT-MSMSGMGV-----ISR-------L-CGEIFGSALTFGAAKSVSAP 238 (258)
T ss_dssp HHHTCSSCBEE-EECTGGGG-----GGG-------T-CHHHHCBCEEECBCC---CT
T ss_pred HHhcCCCCEEE-EeCCCCCh-----HHH-------H-HHHHhCCceEeccCCCCCCC
Confidence 34467899997 89999998 211 0 23344455667666655554
No 7
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=4.88 E-value=2.3e+02 Score=24.46 Aligned_cols=19 Identities=11% Similarity=0.307 Sum_probs=14.7
Q ss_pred HHHHHhhCCCCcEEEEeec
Q 013046 6 DFLVKHLGLRTPIILSVVH 24 (450)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (450)
.-|.+|...+|||||=-+.
T Consensus 26 ~~ir~kyP~kIPVIvEk~~ 44 (130)
T 2zjd_A 26 RLIREQHPTKIPVIIERYK 44 (130)
T ss_dssp HHHHHHCTTEEEEEEEECT
T ss_pred HHHHHhCCCceEEEEEEcC
Confidence 4578899999999985443
No 8
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=4.83 E-value=2.1e+02 Score=17.92 Aligned_cols=11 Identities=36% Similarity=0.905 Sum_probs=8.5
Q ss_pred ccCCcccccee
Q 013046 68 YLPGLKVDAIP 78 (450)
Q Consensus 68 ~~pg~~~~~~~ 78 (450)
|.||.|-..|.
T Consensus 13 f~pgvkygni~ 23 (26)
T 1jgn_B 13 FVPGVKYGNIX 23 (26)
T ss_dssp CCTTSCTTCC-
T ss_pred cCCCceeccee
Confidence 78999988764
No 9
>3tjy_A Effector protein hopab3; type III effector, hoppmal, structural genomics, PSI-biology; HET: MSE; 1.70A {Pseudomonas syringae PV} PDB: 3svi_A
Probab=4.74 E-value=1.1e+02 Score=24.89 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=23.7
Q ss_pred CccchhhHHhhCCCCceeeeecccccCC
Q 013046 384 LNVDSFPFFENFPSAPLAGIFCGGEIGR 411 (450)
Q Consensus 384 ~~~E~~~v~e~lp~vPlaGFy~~GEIgP 411 (450)
.-+|...+++.||+++..|+-..-|++-
T Consensus 40 sr~eq~Il~qHFPnM~~~gI~~~seLA~ 67 (94)
T 3tjy_A 40 SRAEQNVFLQHFPDMLPCGIDRNSELAI 67 (94)
T ss_dssp CHHHHHHHHHHCTTHHHHCCCTTSHHHH
T ss_pred hHHHHHHHHHHCcccccccCCCccHHHH
Confidence 3468999999999999999988888763
No 10
>3hgl_A Effector protein hopab2; five helices, hypersensitive response elicitation, ligase, secreted, UBL conjugation, UBL conjugation pathway; 1.90A {Pseudomonas syringae PV} PDB: 3hgk_E
Probab=4.73 E-value=1.1e+02 Score=24.56 Aligned_cols=26 Identities=31% Similarity=0.577 Sum_probs=22.3
Q ss_pred ccchhhHHhhCCCCceeeeecccccC
Q 013046 385 NVDSFPFFENFPSAPLAGIFCGGEIG 410 (450)
Q Consensus 385 ~~E~~~v~e~lp~vPlaGFy~~GEIg 410 (450)
-+|-..+++.||+++..|+-..-|++
T Consensus 43 r~e~~il~qHFPnm~~~Gi~~~S~LA 68 (85)
T 3hgl_A 43 RVEQNIFRQHFPNMPMHGISRDSELA 68 (85)
T ss_dssp HHHHHHHHHHCTTHHHHCCCTTCHHH
T ss_pred HHHHHHHHHHChhhhhccCCCCCHHH
Confidence 45889999999999999988877765
Done!