Query 013046
Match_columns 450
No_of_seqs 159 out of 291
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 03:12:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013046.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013046hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1icpa_ c.1.4.1 (A:) 12-oxophy 12.9 53 0.0038 30.3 3.1 12 73-84 1-12 (364)
2 d1ybha1 c.31.1.3 (A:281-459) A 10.8 66 0.0048 26.2 2.7 60 4-71 36-95 (179)
3 d1uf3a_ d.159.1.6 (A:) Hypothe 10.5 1E+02 0.0073 24.4 3.8 36 125-160 4-42 (228)
4 d1ttza_ c.47.1.1 (A:) Hypothet 7.9 80 0.0058 22.6 1.9 14 7-20 38-51 (75)
5 d1kfia4 d.129.2.1 (A:444-572) 6.7 2.8E+02 0.02 22.0 4.8 33 312-344 78-119 (129)
6 d1m1na_ c.92.2.3 (A:) Nitrogen 6.5 54 0.0039 31.5 0.2 38 1-38 128-169 (477)
7 d1ozha1 c.31.1.3 (A:188-366) C 6.1 1.7E+02 0.012 23.5 3.2 16 137-152 135-150 (179)
8 d1ci3m1 b.2.6.1 (M:1-169,M:232 5.9 1.2E+02 0.0086 25.5 2.0 44 28-83 85-135 (187)
9 d1gqna_ c.1.10.1 (A:) Type I 3 5.7 66 0.0048 28.1 0.3 44 391-448 191-234 (252)
10 d3d32a1 d.15.1.3 (A:1-118) GAB 5.3 96 0.007 24.3 1.1 18 6-23 21-38 (118)
No 1
>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}
Probab=12.94 E-value=53 Score=30.28 Aligned_cols=12 Identities=42% Similarity=0.692 Sum_probs=11.4
Q ss_pred cccceecccccc
Q 013046 73 KVDAIPLLRRKE 84 (450)
Q Consensus 73 ~~~~~~~~~~~~ 84 (450)
|||.||||.|-+
T Consensus 1 ~~~~~pLFsP~~ 12 (364)
T d1icpa_ 1 QVDKIPLMSPCK 12 (364)
T ss_dssp CCCCCGGGSCEE
T ss_pred CCCCCCCCCCce
Confidence 799999999999
No 2
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}
Probab=10.79 E-value=66 Score=26.19 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=35.1
Q ss_pred hhHHHHHhhCCCCcEEEEeeccccccccccchhhheeeccccCCCCcccccccCCccceEEEEeccCC
Q 013046 4 TLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPG 71 (450)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~pg 71 (450)
.+.-|++++| +||++|. +|++.+.+.|.-.. ...+...++..+.+-++.=+||++|.--+
T Consensus 36 ~l~~lae~~~--~Pv~tt~----~~~g~~~~~h~~~~--G~~G~~g~~~~~~~~~~aDlil~lG~~l~ 95 (179)
T d1ybha1 36 ELGRFVELTG--IPVASTL----MGLGSYPCDDELSL--HMLGMHGTVYANYAVEHSDLLLAFGVRFD 95 (179)
T ss_dssp HHHHHHHHHC--CCEEECT----TTTTSSCTTSTTEE--EECSTTSCHHHHHHHHHCSEEEEESCCCC
T ss_pred HHHHHHhhhc--ccceecc----cccCCCcccccccc--ccCCCcCCHHHHHHHHhhhhhhhcccccc
Confidence 3566778887 6887764 67777777776544 11111111123333445678999997544
No 3
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}
Probab=10.46 E-value=1e+02 Score=24.38 Aligned_cols=36 Identities=8% Similarity=0.023 Sum_probs=21.5
Q ss_pred CCcEEEEecCCCCChhHH---HHHhhhhcCCCceeeccc
Q 013046 125 SPVGIIMFGKEDMDQKPI---IEKLDYAMSMNTVFVGDE 160 (450)
Q Consensus 125 ~p~gii~fgd~~~d~~~l---l~gL~~al~~~~vI~Gg~ 160 (450)
.++.|+++||-+.|.+.| ++..+..=+.-++++|++
T Consensus 4 ~~~~i~~~sd~hg~~eale~~~~~~~~~~~D~vv~~GDl 42 (228)
T d1uf3a_ 4 TVRYILATSNPMGDLEALEKFVKLAPDTGADAIALIGNL 42 (228)
T ss_dssp CCCEEEEEECCTTCHHHHHHHHTHHHHHTCSEEEEESCS
T ss_pred cccEEEEEeCCCCCHHHHHHHHHHHhhcCCCEEEECCCC
Confidence 467888888887775543 333333323345677776
No 4
>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}
Probab=7.95 E-value=80 Score=22.55 Aligned_cols=14 Identities=36% Similarity=0.612 Sum_probs=12.4
Q ss_pred HHHHhhCCCCcEEE
Q 013046 7 FLVKHLGLRTPIIL 20 (450)
Q Consensus 7 ~~~~~~~~~~~~~~ 20 (450)
-+.+|+|-+||||.
T Consensus 38 ~l~~~y~~~IPVl~ 51 (75)
T d1ttza_ 38 ALESAYGLRVPVLR 51 (75)
T ss_dssp HHHHHHTTTCSEEE
T ss_pred HHHHHhCCeeeEEE
Confidence 57889999999997
No 5
>d1kfia4 d.129.2.1 (A:444-572) Exocytosis-sensitive phosphoprotein, pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Probab=6.69 E-value=2.8e+02 Score=22.02 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=25.6
Q ss_pred CCCCEEEEEc---------CCHHHHHHHHHHHHHHHHHHhhh
Q 013046 312 KTGDYFQFYQ---------PDHNAALAACRNASENIRNLKLN 344 (450)
Q Consensus 312 ~~G~~vqf~~---------RD~~aA~~dl~~~a~~lr~l~~~ 344 (450)
-.|+++++|. -|++.|.++|.+++.++.++.+.
T Consensus 78 s~GATiRlY~E~ye~d~~~~~~q~aL~~li~~al~~s~i~~~ 119 (129)
T d1kfia4 78 SVGATIRIYFEQFEQQQIQHETATALANIIKLGLEISDIAQF 119 (129)
T ss_dssp SSSEEEEEEEEEEESSCCCSCHHHHHHHHHHHHHHHHCHHHH
T ss_pred CCCcEEEEEeeecCCCcccCCHHHHHHHHHHHHHHHHhHHHH
Confidence 6788888875 37889999998888887666553
No 6
>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha chain {Azotobacter vinelandii [TaxId: 354]}
Probab=6.45 E-value=54 Score=31.46 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=27.6
Q ss_pred CchhhHHHHHhhC--CCCcEEEEeeccccccc--cccchhhh
Q 013046 1 MRRTLDFLVKHLG--LRTPIILSVVHGVMGRD--ALTDEFRE 38 (450)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~ 38 (450)
|++++.-+.+++- .-+-|+.||.+|+||-| ++..|++|
T Consensus 128 L~~~I~ei~~~~~~pk~I~V~sTC~~~lIGDDi~~v~~~~~~ 169 (477)
T d1m1na_ 128 LAKLIDEVETLFPLNKGISVQSECPIGLIGDDIESVSKVKGA 169 (477)
T ss_dssp HHHHHHHHHHHCTTCCCEEEEECTHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEEECCcHHHHHhhCHHHHHHHHHH
Confidence 3566677777773 45789999999999987 44566553
No 7
>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}
Probab=6.08 E-value=1.7e+02 Score=23.51 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=11.5
Q ss_pred CChhHHHHHhhhhcCC
Q 013046 137 MDQKPIIEKLDYAMSM 152 (450)
Q Consensus 137 ~d~~~ll~gL~~al~~ 152 (450)
.|.+..++.|..++..
T Consensus 135 gD~~~~l~~L~~~l~~ 150 (179)
T d1ozha1 135 GDIAGTLNKLAQNIDH 150 (179)
T ss_dssp SCHHHHHHHHHHTCCS
T ss_pred eCHHHHHHHHHHhhhc
Confidence 4677788888777654
No 8
>d1ci3m1 b.2.6.1 (M:1-169,M:232-249) Cytochrome f, large domain {Phormidium laminosum [TaxId: 32059]}
Probab=5.87 E-value=1.2e+02 Score=25.54 Aligned_cols=44 Identities=32% Similarity=0.480 Sum_probs=29.4
Q ss_pred ccccccchhhhee-----eccccCCCCcccccccCCccceEEEEeccCCccccce--eccccc
Q 013046 28 GRDALTDEFREVK-----FQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAI--PLLRRK 83 (450)
Q Consensus 28 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~l~~~~~pg~~~~~~--~~~~~~ 83 (450)
=.|-+++|.||.. |+.|..+.. =+|.||=+||-|-..| |+|.|-
T Consensus 85 P~dri~~e~kek~~~~~~fqpYs~~~~------------NIlvvGPvpG~~~~EivfPiLsPd 135 (187)
T d1ci3m1 85 PEDRIPEEMKEEVGPSYLFQPYADDKQ------------NIVLVGPLPGDEYEEIVFPVLSPN 135 (187)
T ss_dssp CGGGSCHHHHTTSCCGGGCEESSTTCT------------TEEEEEEEETTTCSSEEEEEECCC
T ss_pred CcccCCHHHHHHhcCceeeeecCCCCC------------CEEEEcCCCCccccEEEEeecCCC
Confidence 3578899999875 333433321 1688999999998754 565554
No 9
>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}
Probab=5.66 E-value=66 Score=28.15 Aligned_cols=44 Identities=9% Similarity=0.196 Sum_probs=28.7
Q ss_pred HHhhCCCCceeeeecccccCCCCCccCCCCCCCCCCcccccccccceeEeeeecCCCC
Q 013046 391 FFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAP 448 (450)
Q Consensus 391 v~e~lp~vPlaGFy~~GEIgP~~~~~~~g~~~~~~~~~~~~LH~yT~v~~l~s~~p~~ 448 (450)
+++..++.|+++ ||.||.|. ... . -+.+.|-..+|+.+.+.++|
T Consensus 191 ~~~~~~~~P~I~-~~MG~~G~-----~SR-------i-~~~~~GS~~tya~~~~~sAP 234 (252)
T d1gqna_ 191 MQQHYADRPVIT-MSMAKEGV-----ISR-------L-AGEVFGSAATFGAVKQASAP 234 (252)
T ss_dssp HHHHTCSSCCEE-EECTTTTH-----HHH-------H-CHHHHTCCEEECBSSSCCST
T ss_pred HHHhCCCCCEEE-EecCCcch-----hHH-------H-HHHHhCCceEeccCCCCCCC
Confidence 345667899999 99999988 211 0 23455666777777665554
No 10
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.32 E-value=96 Score=24.28 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=14.1
Q ss_pred HHHHHhhCCCCcEEEEee
Q 013046 6 DFLVKHLGLRTPIILSVV 23 (450)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~ 23 (450)
.-|.+|..-|+||||--+
T Consensus 21 ~~i~~KyPdriPVIve~~ 38 (118)
T d3d32a1 21 EKIRKKYPDRVPVIVEKA 38 (118)
T ss_dssp HHHHHHCTTEEEEEEEEC
T ss_pred HHHHHHCCCCceEEEEEc
Confidence 347788999999998643
Done!