Your job contains 1 sequence.
>013047
MLQLFLIYILIFPLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVE
NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP
DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH
EAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYG
RGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEYDFDNRYTEFHGRQFIGRGGRSFR
GGYNAPSRAAAGAGPSRSNPTRLWPDGPDRGYGEHHSYRRQPFSQGEDFDRPFIGRQVDD
PYFYDDRAHGVKRSFHVMDHEPDYMGPRRFRPRLDYNDPVIPFHGSHHHDNVGACSNHYS
DDYHVPNYGAHPPYPPYYGDDRLYGGGYFY
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013047
(450 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2042366 - symbol:AT2G44710 species:3702 "Arabi... 580 1.1e-60 2
UNIPROTKB|E7ETM7 - symbol:HNRNPR "Heterogeneous nuclear r... 221 1.4e-15 1
UNIPROTKB|Q2L7G6 - symbol:HNRNPR "Heterogeneous nuclear r... 221 2.3e-15 1
UNIPROTKB|A3KMV6 - symbol:HNRNPR "Uncharacterized protein... 221 2.6e-15 1
UNIPROTKB|E2RE36 - symbol:HNRNPR "Uncharacterized protein... 221 2.6e-15 1
UNIPROTKB|O43390 - symbol:HNRNPR "Heterogeneous nuclear r... 221 2.6e-15 1
TAIR|locus:2134638 - symbol:LIF2 "LHP1-Interacting Factor... 218 3.4e-15 1
RGD|631348 - symbol:Hnrnpr "heterogeneous nuclear ribonuc... 214 1.6e-14 1
UNIPROTKB|Q566E4 - symbol:Hnrnpr "Heterogeneous nuclear r... 214 1.6e-14 1
UNIPROTKB|F1LUZ6 - symbol:Hnrnpr "Protein Hnrnpr" species... 209 1.7e-14 1
UNIPROTKB|I3LKZ4 - symbol:HNRNPR "Uncharacterized protein... 210 1.8e-14 2
UNIPROTKB|F1NWI9 - symbol:SYNCRIP "Uncharacterized protei... 211 3.4e-14 1
UNIPROTKB|E1BZR1 - symbol:HNRNPR "Uncharacterized protein... 215 3.5e-14 2
ZFIN|ZDB-GENE-030131-4862 - symbol:syncrip "synaptotagmin... 208 8.3e-14 2
UNIPROTKB|H0YA96 - symbol:HNRNPD "Heterogeneous nuclear r... 184 1.0e-13 1
RGD|1305683 - symbol:Syncrip "synaptotagmin binding, cyto... 205 1.2e-13 1
UNIPROTKB|Q7TP47 - symbol:Syncrip "Heterogeneous nuclear ... 205 1.2e-13 1
MGI|MGI:1891690 - symbol:Syncrip "synaptotagmin binding, ... 205 1.7e-13 1
UNIPROTKB|F6XIK8 - symbol:SYNCRIP "Uncharacterized protei... 204 1.8e-13 1
UNIPROTKB|O60506 - symbol:SYNCRIP "Heterogeneous nuclear ... 204 2.1e-13 1
UNIPROTKB|F2Z5D4 - symbol:SYNCRIP "Uncharacterized protei... 204 2.2e-13 1
UNIPROTKB|F1MCT8 - symbol:SYNCRIP "Uncharacterized protei... 204 2.2e-13 1
UNIPROTKB|D4A6A2 - symbol:D4A6A2 "Uncharacterized protein... 175 9.8e-13 1
UNIPROTKB|B4DTC3 - symbol:HNRNPD "cDNA FLJ54150, highly s... 188 1.8e-12 1
ZFIN|ZDB-GENE-070424-97 - symbol:hnrnpd "heterogeneous nu... 188 2.2e-12 1
ZFIN|ZDB-GENE-030131-3104 - symbol:syncripl "synaptotagmi... 193 3.1e-12 1
UNIPROTKB|Q5R9H4 - symbol:A1CF "APOBEC1 complementation f... 193 3.3e-12 1
ZFIN|ZDB-GENE-060824-3 - symbol:a1cf "apobec1 complementa... 193 3.3e-12 1
UNIPROTKB|E2QWK5 - symbol:A1CF "Uncharacterized protein" ... 193 3.4e-12 1
RGD|619834 - symbol:A1cf "APOBEC1 complementation factor"... 193 3.4e-12 1
UNIPROTKB|F1LNL0 - symbol:A1cf "APOBEC1 complementation f... 193 3.4e-12 1
MGI|MGI:1917115 - symbol:A1cf "APOBEC1 complementation fa... 193 3.4e-12 1
UNIPROTKB|A5D9H5 - symbol:HNRPD "Heterogeneous nuclear ri... 184 5.6e-12 1
WB|WBGene00002000 - symbol:hrp-2 species:6239 "Caenorhabd... 185 6.0e-12 2
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 184 6.0e-12 1
UNIPROTKB|F1SD00 - symbol:A1CF "Uncharacterized protein" ... 190 6.3e-12 1
UNIPROTKB|H0Y8G5 - symbol:HNRNPD "Heterogeneous nuclear r... 179 6.4e-12 1
UNIPROTKB|G3V6A5 - symbol:Hnrpd "Heterogeneous nuclear ri... 185 6.5e-12 1
ZFIN|ZDB-GENE-030131-2249 - symbol:hnrnpa0a "heterogeneou... 164 8.2e-12 2
UNIPROTKB|F1LUM4 - symbol:F1LUM4 "Uncharacterized protein... 166 9.5e-12 1
UNIPROTKB|E1BB24 - symbol:RBM46 "Uncharacterized protein"... 188 1.0e-11 1
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 182 1.2e-11 1
UNIPROTKB|E1B7G9 - symbol:A1CF "Uncharacterized protein" ... 188 1.2e-11 1
UNIPROTKB|G3V6A4 - symbol:Hnrpd "Protein Hnrpd" species:1... 181 1.2e-11 1
FB|FBgn0038826 - symbol:Syp "Syncrip" species:7227 "Droso... 189 1.3e-11 1
UNIPROTKB|B3KWU8 - symbol:RBM46 "Putative uncharacterized... 186 1.3e-11 1
UNIPROTKB|E2QVD3 - symbol:SYNCRIP "Uncharacterized protei... 188 1.3e-11 1
UNIPROTKB|E2RTF9 - symbol:RBM46 "Uncharacterized protein"... 186 1.4e-11 1
UNIPROTKB|B4DZ27 - symbol:RBM46 "Probable RNA-binding pro... 186 1.4e-11 1
UNIPROTKB|E2R8F4 - symbol:RBM46 "Uncharacterized protein"... 186 1.7e-11 1
UNIPROTKB|Q8TBY0 - symbol:RBM46 "Probable RNA-binding pro... 186 1.7e-11 1
UNIPROTKB|F1RYR7 - symbol:RBM46 "Uncharacterized protein"... 186 1.7e-11 1
RGD|1560205 - symbol:Rbm46 "RNA binding motif protein 46"... 186 1.7e-11 1
UNIPROTKB|E1BQR8 - symbol:A1CF "Uncharacterized protein" ... 185 2.3e-11 1
ZFIN|ZDB-GENE-030131-618 - symbol:hnrnpa0l "heterogeneous... 178 2.8e-11 1
MGI|MGI:3645057 - symbol:Rbm46 "RNA binding motif protein... 184 2.8e-11 1
UNIPROTKB|F8VRQ1 - symbol:HNRNPA1 "Heterogeneous nuclear ... 178 3.0e-11 1
ZFIN|ZDB-GENE-060224-1 - symbol:hnrnpa3 "heterogeneous nu... 178 3.2e-11 1
UNIPROTKB|F8W9F8 - symbol:A1CF "APOBEC1 complementation f... 184 3.4e-11 1
UNIPROTKB|Q9NQ94 - symbol:A1CF "APOBEC1 complementation f... 184 3.5e-11 1
UNIPROTKB|G5E5V7 - symbol:G5E5V7 "Uncharacterized protein... 178 3.5e-11 1
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ... 178 3.7e-11 1
UNIPROTKB|A6H6Y0 - symbol:HNRNPD "Uncharacterized protein... 179 4.0e-11 1
UNIPROTKB|E2RIX2 - symbol:HNRNPD "Uncharacterized protein... 179 4.0e-11 1
UNIPROTKB|Q14103 - symbol:HNRNPD "Heterogeneous nuclear r... 179 4.0e-11 1
MGI|MGI:101947 - symbol:Hnrnpd "heterogeneous nuclear rib... 179 4.0e-11 1
UNIPROTKB|F1SMV6 - symbol:LOC100737174 "Uncharacterized p... 179 4.4e-11 1
FB|FBgn0001215 - symbol:Hrb98DE "Heterogeneous nuclear ri... 166 5.8e-11 2
UNIPROTKB|F1NJQ8 - symbol:RBM46 "Uncharacterized protein"... 179 6.1e-11 1
UNIPROTKB|P51991 - symbol:HNRNPA3 "Heterogeneous nuclear ... 178 6.2e-11 1
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei... 178 6.3e-11 1
RGD|727807 - symbol:Hnrnpa3 "heterogeneous nuclear ribonu... 178 6.3e-11 1
UNIPROTKB|E1BEG2 - symbol:HNRNPA3 "Uncharacterized protei... 178 6.3e-11 1
UNIPROTKB|Q5ZIH1 - symbol:HNRNPD "Uncharacterized protein... 171 6.7e-11 1
UNIPROTKB|F1NCW4 - symbol:HNRNPD "Uncharacterized protein... 171 7.0e-11 1
UNIPROTKB|E1BV69 - symbol:RBM46 "Uncharacterized protein"... 179 8.0e-11 1
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 173 8.6e-11 1
RGD|620365 - symbol:Hnrpd "heterogeneous nuclear ribonucl... 176 8.7e-11 1
UNIPROTKB|Q9JJ54 - symbol:Hnrnpd "Heterogeneous nuclear r... 176 8.7e-11 1
UNIPROTKB|F8VSB5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 174 8.9e-11 1
UNIPROTKB|F1LM82 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 174 9.6e-11 1
UNIPROTKB|P09867 - symbol:HNRNPA1 "Heterogeneous nuclear ... 174 1.1e-10 1
UNIPROTKB|Q06A94 - symbol:HNRNPA1 "Uncharacterized protei... 174 1.1e-10 1
UNIPROTKB|A5A6H4 - symbol:HNRNPA1 "Heterogeneous nuclear ... 174 1.1e-10 1
MGI|MGI:104820 - symbol:Hnrnpa1 "heterogeneous nuclear ri... 174 1.1e-10 1
UNIPROTKB|Q5I0M7 - symbol:Hnrnpa1 "Hnrpa1 protein" specie... 174 1.1e-10 1
UNIPROTKB|F8VXY0 - symbol:HNRNPA1 "Heterogeneous nuclear ... 173 1.1e-10 1
UNIPROTKB|F8W1S7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 174 1.3e-10 2
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 175 1.3e-10 1
UNIPROTKB|E2RFV7 - symbol:HNRNPA3 "Uncharacterized protei... 175 1.4e-10 1
UNIPROTKB|P08199 - symbol:NCL "Nucleolin" species:10036 "... 179 1.7e-10 1
UNIPROTKB|I3LRH2 - symbol:LOC100737210 "Uncharacterized p... 179 1.7e-10 1
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p... 174 1.8e-10 1
MGI|MGI:2384294 - symbol:Rbm47 "RNA binding motif protein... 172 2.0e-10 2
UNIPROTKB|F1Q212 - symbol:RBM47 "RNA-binding protein 47" ... 177 2.1e-10 1
UNIPROTKB|Q9XSR3 - symbol:RBM47 "RNA-binding protein 47" ... 177 2.1e-10 1
RGD|3153 - symbol:Ncl "nucleolin" species:10116 "Rattus n... 178 2.2e-10 1
UNIPROTKB|Q5U328 - symbol:Ncl "Nucleolin, isoform CRA_c" ... 178 2.2e-10 1
UNIPROTKB|E1B8K6 - symbol:NCL "Uncharacterized protein" s... 178 2.2e-10 1
UNIPROTKB|F8W6I7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 171 2.4e-10 1
WARNING: Descriptions of 367 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2042366 [details] [associations]
symbol:AT2G44710 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 EMBL:AY091781 EMBL:BT000637
IPI:IPI00540100 RefSeq:NP_850422.1 UniGene:At.27807
ProteinModelPortal:Q8RWQ1 SMR:Q8RWQ1 IntAct:Q8RWQ1 STRING:Q8RWQ1
PRIDE:Q8RWQ1 EnsemblPlants:AT2G44710.1 GeneID:819079
KEGG:ath:AT2G44710 TAIR:At2g44710 InParanoid:Q8RWQ1 OMA:EGEGYEN
PhylomeDB:Q8RWQ1 ProtClustDB:CLSN2722610 Genevestigator:Q8RWQ1
Uniprot:Q8RWQ1
Length = 809
Score = 580 (209.2 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 119/241 (49%), Positives = 161/241 (66%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GK+CG S+DNDTLFVGNIC WT EA+++KLK YGVE +++I LV D + ++RG
Sbjct: 280 INGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRG 339
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
+AF+ FS DAM A+KRL K DV+FG E+ KV+F + + + EIMA VKT+F+DG+
Sbjct: 340 YAFLEFSSRSDAMDAHKRLVKKDVMFG-VEKPAKVSFTDSFLDLEDEIMAQVKTIFIDGL 398
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
P W E ++RD +K YG + ++ LARNM +A+RKD+GF+ F THEAAV+C INN E
Sbjct: 399 LPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFINNSELG 458
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ 256
+G K K+RARLS P+ K A KG S SR+ R G+GR+G R++F
Sbjct: 459 EGEDKAKVRARLSRPLQK--AGKGRQS---------SRSDQRSRHGAGRSG----RSSFA 503
Query: 257 R 257
R
Sbjct: 504 R 504
Score = 59 (25.8 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 34/110 (30%), Positives = 47/110 (42%)
Query: 326 DGPDRGYGEHHSYRRQPFSQGE-DFDRPFI----GRQVDDPYFYDD---RAH----GVKR 373
D P RG G Y P S + RPF+ + + P Y + RA+ G KR
Sbjct: 627 DYPPRGSG----YSDLPRSSSRSEIRRPFVDDLYSPRFERPPSYSEGRPRAYEPLPGSKR 682
Query: 374 SFHVMDH-EPDY--MGPRRFRPRLDYNDPVIPF-HGSHHHDNVGACSNHY 419
+ +D P Y + R RPRLDY+ V P +G + D + S Y
Sbjct: 683 PYAALDDLPPRYADVDVRHSRPRLDYD--VGPSQYGESYGDRIPRSSLGY 730
Score = 46 (21.3 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 383 DYMGPRRFRPRLDYNDPVIPFHGSHHHDNVGACSNHYSD 421
D + P R RP + Y+ + P + D+ + YSD
Sbjct: 599 DELPPPRSRPAVSYSSRLSPERHLSYRDDYPPRGSGYSD 637
>UNIPROTKB|E7ETM7 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 EMBL:AL109936 HGNC:HGNC:5047
ChiTaRS:HNRNPR IPI:IPI00910614 ProteinModelPortal:E7ETM7 SMR:E7ETM7
Ensembl:ENST00000426846 UCSC:uc010odx.2 ArrayExpress:E7ETM7
Bgee:E7ETM7 Uniprot:E7ETM7
Length = 473
Score = 221 (82.9 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 77/277 (27%), Positives = 121/277 (43%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 132
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 133 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 189
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY F+ F AAV ++ +N KE
Sbjct: 190 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 241
Query: 198 GNSKVKLRARLSNPMPKTQAVK-GGMSGGFR--IGHGSSRT---FSRYGRGSGRAGHHFN 251
++ L + QA + S + H R GRG GR G+ +
Sbjct: 242 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP 301
Query: 252 RANFQRGRGFYQ--HGRNHSSRMGPTE---YDFDNRY 283
++ +Y +G ++ G E Y +D+ Y
Sbjct: 302 -PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGY 337
>UNIPROTKB|Q2L7G6 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
Uniprot:Q2L7G6
Length = 595
Score = 221 (82.9 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 77/277 (27%), Positives = 121/277 (43%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 196 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 254
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 255 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 311
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY F+ F AAV ++ +N KE
Sbjct: 312 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 363
Query: 198 GNSKVKLRARLSNPMPKTQAVK-GGMSGGFR--IGHGSSRT---FSRYGRGSGRAGHHFN 251
++ L + QA + S + H R GRG GR G+ +
Sbjct: 364 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP 423
Query: 252 RANFQRGRGFYQ--HGRNHSSRMGPTE---YDFDNRY 283
++ +Y +G ++ G E Y +D+ Y
Sbjct: 424 -PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGY 459
>UNIPROTKB|A3KMV6 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 GO:GO:0071013
OrthoDB:EOG4FN4HM HOGENOM:HOG000186082 CTD:10236 KO:K13161
OMA:YYPPPRM EMBL:DAAA02006438 EMBL:BC133299 IPI:IPI00704335
RefSeq:NP_001076077.1 UniGene:Bt.3687 SMR:A3KMV6 STRING:A3KMV6
Ensembl:ENSBTAT00000022054 GeneID:512479 KEGG:bta:512479
InParanoid:A3KMV6 NextBio:20870409 Uniprot:A3KMV6
Length = 633
Score = 221 (82.9 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 77/277 (27%), Positives = 121/277 (43%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY F+ F AAV ++ +N KE
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 401
Query: 198 GNSKVKLRARLSNPMPKTQAVK-GGMSGGFR--IGHGSSRT---FSRYGRGSGRAGHHFN 251
++ L + QA + S + H R GRG GR G+ +
Sbjct: 402 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP 461
Query: 252 RANFQRGRGFYQ--HGRNHSSRMGPTE---YDFDNRY 283
++ +Y +G ++ G E Y +D+ Y
Sbjct: 462 -PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGY 497
>UNIPROTKB|E2RE36 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 CTD:10236 KO:K13161 OMA:YYPPPRM EMBL:AAEX03001757
RefSeq:XP_852945.1 ProteinModelPortal:E2RE36
Ensembl:ENSCAFT00000021145 GeneID:478192 KEGG:cfa:478192
Uniprot:E2RE36
Length = 633
Score = 221 (82.9 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 77/277 (27%), Positives = 121/277 (43%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY F+ F AAV ++ +N KE
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 401
Query: 198 GNSKVKLRARLSNPMPKTQAVK-GGMSGGFR--IGHGSSRT---FSRYGRGSGRAGHHFN 251
++ L + QA + S + H R GRG GR G+ +
Sbjct: 402 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP 461
Query: 252 RANFQRGRGFYQ--HGRNHSSRMGPTE---YDFDNRY 283
++ +Y +G ++ G E Y +D+ Y
Sbjct: 462 -PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGY 497
>UNIPROTKB|O43390 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0006397 "mRNA processing" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Reactome:REACT_1675
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 HOGENOM:HOG000186082
EMBL:AF000364 EMBL:AL109936 EMBL:BC001449 IPI:IPI00012074
IPI:IPI00941649 PIR:T02673 RefSeq:NP_001095867.1
RefSeq:NP_001095868.1 RefSeq:NP_005817.1 UniGene:Hs.373763 PDB:2DK2
PDBsum:2DK2 ProteinModelPortal:O43390 SMR:O43390 IntAct:O43390
MINT:MINT-2796101 STRING:O43390 PhosphoSite:O43390 PaxDb:O43390
PeptideAtlas:O43390 PRIDE:O43390 DNASU:10236
Ensembl:ENST00000302271 Ensembl:ENST00000374612
Ensembl:ENST00000374616 GeneID:10236 KEGG:hsa:10236 UCSC:uc001bgp.4
UCSC:uc001bgr.4 CTD:10236 GeneCards:GC01M023630 HGNC:HGNC:5047
HPA:CAB011687 HPA:HPA026092 MIM:607201 neXtProt:NX_O43390
PharmGKB:PA162391459 KO:K13161 OMA:YYPPPRM PhylomeDB:O43390
ChiTaRS:HNRNPR EvolutionaryTrace:O43390 GenomeRNAi:10236
NextBio:38770 PMAP-CutDB:O43390 ArrayExpress:O43390 Bgee:O43390
CleanEx:HS_HNRNPR Genevestigator:O43390 GermOnline:ENSG00000125944
Uniprot:O43390
Length = 633
Score = 221 (82.9 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 77/277 (27%), Positives = 121/277 (43%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY F+ F AAV ++ +N KE
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 401
Query: 198 GNSKVKLRARLSNPMPKTQAVK-GGMSGGFR--IGHGSSRT---FSRYGRGSGRAGHHFN 251
++ L + QA + S + H R GRG GR G+ +
Sbjct: 402 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP 461
Query: 252 RANFQRGRGFYQ--HGRNHSSRMGPTE---YDFDNRY 283
++ +Y +G ++ G E Y +D+ Y
Sbjct: 462 -PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGY 497
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 218 (81.8 bits), Expect = 3.4e-15, P = 3.4e-15
Identities = 58/198 (29%), Positives = 102/198 (51%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K+ GK + SE + LF+GNI WT++ ++ ++D G GVENI L+ D + +
Sbjct: 180 KEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVG-PGVENIELIKDPTNTTRN 238
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA-HVKTVFL 133
RGFAFV++ + +A A Y R + D F V +A+P P+ A VK +++
Sbjct: 239 RGFAFVLY--YNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYV 296
Query: 134 DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
+P + Q+++ + +G+V +IV KR D+GF+ ++ +A + A+ +
Sbjct: 297 KNIPENTSTEQLKELFQRHGEVTKIVTPPGKG-GKR-DFGFVHYAERSSA---LKAVKDT 351
Query: 194 EFSDGNSKVKLRARLSNP 211
E + N + L L+ P
Sbjct: 352 ERYEVNGQ-PLEVVLAKP 368
>RGD|631348 [details] [associations]
symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
Uniprot:Q811S1
Length = 632
Score = 214 (80.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 76/275 (27%), Positives = 119/275 (43%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY F+ F AAV ++ +N KE
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 401
Query: 198 GNSKVKLRARLSNPMPKTQAVK-GGMSGGFR--IGHGSSRTFSRY-GRGSGRAGHHFNRA 253
++ L + QA + S + H R GRG G G +
Sbjct: 402 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPMRGRGRGGRGGYGYPP 461
Query: 254 NFQRGRGFYQ--HGRNHSSRMGPTE---YDFDNRY 283
++ +Y +G ++ G E Y +D+ Y
Sbjct: 462 DYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGY 496
>UNIPROTKB|Q566E4 [details] [associations]
symbol:Hnrnpr "Heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:631348 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0071013 OrthoDB:EOG4FN4HM
HOGENOM:HOG000186082 CTD:10236 KO:K13161 EMBL:BC093598
IPI:IPI00194562 RefSeq:NP_783193.2 UniGene:Rn.195396 SMR:Q566E4
STRING:Q566E4 Ensembl:ENSRNOT00000016001 GeneID:319110
KEGG:rno:319110 InParanoid:Q566E4 NextBio:672099
Genevestigator:Q566E4 Uniprot:Q566E4
Length = 632
Score = 214 (80.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 76/275 (27%), Positives = 119/275 (43%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY F+ F AAV ++ +N KE
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 401
Query: 198 GNSKVKLRARLSNPMPKTQAVK-GGMSGGFR--IGHGSSRTFSRY-GRGSGRAGHHFNRA 253
++ L + QA + S + H R GRG G G +
Sbjct: 402 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPMRGRGRGGRGGYGYPP 461
Query: 254 NFQRGRGFYQ--HGRNHSSRMGPTE---YDFDNRY 283
++ +Y +G ++ G E Y +D+ Y
Sbjct: 462 DYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGY 496
>UNIPROTKB|F1LUZ6 [details] [associations]
symbol:Hnrnpr "Protein Hnrnpr" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:631348 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
IPI:IPI00391659 ProteinModelPortal:F1LUZ6
Ensembl:ENSRNOT00000015971 OMA:MENVERT ArrayExpress:F1LUZ6
Uniprot:F1LUZ6
Length = 381
Score = 209 (78.6 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 59/187 (31%), Positives = 90/187 (48%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 203 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 261
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 262 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 318
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY F+ F AAV ++ +N KE
Sbjct: 319 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 370
Query: 198 GNSKVKL 204
++ L
Sbjct: 371 EEIEIVL 377
>UNIPROTKB|I3LKZ4 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YYPPPRM Ensembl:ENSSSCT00000026418 Uniprot:I3LKZ4
Length = 599
Score = 210 (79.0 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 61/202 (30%), Positives = 94/202 (46%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY F+ F AAV ++ +N KE
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 401
Query: 198 GNSKVKLRARLSNPMPKTQAVK 219
++ L + QA +
Sbjct: 402 EEIEIVLAKPPDKKRKERQAAR 423
Score = 45 (20.9 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 19/64 (29%), Positives = 24/64 (37%)
Query: 328 PDRGYGEHHSYRRQPFSQGEDFDRPFIGRQVDDPYF--YDDRAHGVKRSFHVMDHEPDYM 385
P RG G Y + ED+ + G D Y Y+DR G R P +
Sbjct: 445 PIRGRGRGGXYPPDYYGY-EDYYDDYYGYDYHD-YRGGYEDRGRGGGRGGRGAPPPPRPL 502
Query: 386 GPRR 389
GP R
Sbjct: 503 GPPR 506
Score = 43 (20.2 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 224 GGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRG 260
GG R G G+ G G G A QRGRG
Sbjct: 487 GGGRGGRGAPPPPRPLGPPRGSRGGRGGPAQQQRGRG 523
>UNIPROTKB|F1NWI9 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:AADN02002396 IPI:IPI00680994 Ensembl:ENSGALT00000031678
ArrayExpress:F1NWI9 Uniprot:F1NWI9
Length = 622
Score = 211 (79.3 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 71/240 (29%), Positives = 109/240 (45%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 GKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDDKKKNRGFC 288
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 FLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVKVLFVRNLA 345
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 NTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 397
Query: 198 GNSKVKLRA----RLSNPMPKTQAVKGGMSGGFRI-G--HGSSRTFSRYGRGSGRAGHHF 250
N ++ + + QA K M + G H T R GRG GR G+ +
Sbjct: 398 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGR-GRG-GRGGYGY 455
>UNIPROTKB|E1BZR1 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 OMA:YYPPPRM EMBL:AADN02051307 EMBL:AADN02051308
IPI:IPI00597410 ProteinModelPortal:E1BZR1
Ensembl:ENSGALT00000001185 ArrayExpress:E1BZR1 Uniprot:E1BZR1
Length = 661
Score = 215 (80.7 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 62/202 (30%), Positives = 94/202 (46%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 262 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFNKV-TEGLVDVILYHQPDDKKKNRGFC 320
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 321 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 377
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY F+ F AAV +N +N KE
Sbjct: 378 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMNEMNGKEIEG 429
Query: 198 GNSKVKLRARLSNPMPKTQAVK 219
++ L + QA +
Sbjct: 430 EEIEIVLAKPPDKKRKERQAAR 451
Score = 38 (18.4 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 380 HEPDYMGPRRFRPRLDYNDPVIPFHGSHHHDNVGACSNHYSDDYH 424
+ PDY G DY D ++G +HD G Y D Y+
Sbjct: 487 YPPDYYGYE------DYYDD---YYGYDYHDYRGG----YEDPYY 518
Score = 37 (18.1 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 211 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 247
PM + +GG G + G +R RG G G
Sbjct: 563 PMGPPRGARGGRGGPAQQQRGRGARGARGNRG-GNVG 598
>ZFIN|ZDB-GENE-030131-4862 [details] [associations]
symbol:syncrip "synaptotagmin binding, cytoplasmic
RNA interacting protein" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4862 GO:GO:0000166 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:CT573058 IPI:IPI00504625
Ensembl:ENSDART00000129870 Bgee:F1QY96 Uniprot:F1QY96
Length = 694
Score = 208 (78.3 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 67/239 (28%), Positives = 110/239 (46%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 295 GKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDDKKKNRGFC 353
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 354 FLEYEDHKTAAQARRRLMSGKVKVWGN---LVTVEWADPIEDPDPEVMAKVKVLFVRNLA 410
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G++ R+ K KDY F+ F+ + AV + +N KE
Sbjct: 411 NSVTEEILEKAFGQFGNLERV--------KKLKDYAFVHFNDRDGAVKALTEMNGKELEG 462
Query: 198 GNSKVKLRA----RLSNPMPKTQAVKGGMSGGFRI-GHGSSRTFSR-YGRGSGRAGHHF 250
+ ++ + + QA K M + G +R GRG+ R G+ +
Sbjct: 463 EHIEIVFAKPPDQKRKERKAQRQAAKTQMYDDYYYYGPPQMPPPARGRGRGASRGGYSY 521
Score = 43 (20.2 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 227 RIGHGSSRTFSRYGRGSGRAGHHFNRANF-QRGRGFYQHGRNHSSRMG 273
R G GS+R + RG G + RA F QRG G + R G
Sbjct: 563 RGGRGSARGGTSPARGRGASAPR-GRAGFPQRGGAGAGPGASRGLRGG 609
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 184 (69.8 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 63/221 (28%), Positives = 101/221 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 3 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 49
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 50 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 108
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 109 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 164
Query: 211 PMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGH 248
+ Q +GG +G R G G + S YG+ S R GH
Sbjct: 165 EQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGH 203
>RGD|1305683 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISO]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISO;ISS] [GO:0071346 "cellular response to
interferon-gamma" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305683 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0005681 GO:GO:0003723
GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160 EMBL:AY325202
IPI:IPI00382222 RefSeq:NP_001041381.1 UniGene:Rn.202606
ProteinModelPortal:Q7TP47 SMR:Q7TP47 IntAct:Q7TP47 STRING:Q7TP47
PhosphoSite:Q7TP47 PRIDE:Q7TP47 Ensembl:ENSRNOT00000041655
GeneID:363113 KEGG:rno:363113 UCSC:RGD:1305683 HOGENOM:HOG000186082
NextBio:682484 ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 205 (77.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 71/240 (29%), Positives = 110/240 (45%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 141 GKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFC 199
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ TV+ +A+P+ +PDPE+MA VK +F+ +
Sbjct: 200 FLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVE--WADPIEDPDPEVMAKVKVLFVRNLA 256
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 257 NTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 308
Query: 198 GNSKVKLRA----RLSNPMPKTQAVKGGMSGGFRI-G--HGSSRTFSRYGRGSGRAGHHF 250
N ++ + + QA K M + G H T R GRG GR G+ +
Sbjct: 309 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGR-GRG-GRGGYGY 366
>UNIPROTKB|Q7TP47 [details] [associations]
symbol:Syncrip "Heterogeneous nuclear ribonucleoprotein Q"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1305683 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
GO:GO:0006397 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005681
GO:GO:0003723 GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160
EMBL:AY325202 IPI:IPI00382222 RefSeq:NP_001041381.1
UniGene:Rn.202606 ProteinModelPortal:Q7TP47 SMR:Q7TP47
IntAct:Q7TP47 STRING:Q7TP47 PhosphoSite:Q7TP47 PRIDE:Q7TP47
Ensembl:ENSRNOT00000041655 GeneID:363113 KEGG:rno:363113
UCSC:RGD:1305683 HOGENOM:HOG000186082 NextBio:682484
ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 205 (77.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 71/240 (29%), Positives = 110/240 (45%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 141 GKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFC 199
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ TV+ +A+P+ +PDPE+MA VK +F+ +
Sbjct: 200 FLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVE--WADPIEDPDPEVMAKVKVLFVRNLA 256
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 257 NTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 308
Query: 198 GNSKVKLRA----RLSNPMPKTQAVKGGMSGGFRI-G--HGSSRTFSRYGRGSGRAGHHF 250
N ++ + + QA K M + G H T R GRG GR G+ +
Sbjct: 309 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGR-GRG-GRGGYGY 366
>MGI|MGI:1891690 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IDA] [GO:0071346
"cellular response to interferon-gamma" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1891690 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0071013 GO:GO:0008143
GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 CTD:10492 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM EMBL:AF093821 EMBL:AB035725
EMBL:AK034845 EMBL:AK077588 EMBL:AK078158 EMBL:BC004001
EMBL:BC041148 EMBL:BC050079 EMBL:BC055863 EMBL:BC058807
EMBL:BC080309 EMBL:BC108363 EMBL:AF408434 IPI:IPI00406117
IPI:IPI00406118 RefSeq:NP_062640.2 RefSeq:NP_062770.1
UniGene:Mm.260545 ProteinModelPortal:Q7TMK9 SMR:Q7TMK9
STRING:Q7TMK9 PhosphoSite:Q7TMK9 REPRODUCTION-2DPAGE:IPI00406117
PaxDb:Q7TMK9 PRIDE:Q7TMK9 Ensembl:ENSMUST00000069221
Ensembl:ENSMUST00000173801 Ensembl:ENSMUST00000174282 GeneID:56403
KEGG:mmu:56403 UCSC:uc009qyo.1 UCSC:uc009qyq.1 InParanoid:Q7TMK9
NextBio:312520 Bgee:Q7TMK9 Genevestigator:Q7TMK9
GermOnline:ENSMUSG00000032423 Uniprot:Q7TMK9
Length = 623
Score = 205 (77.2 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 71/240 (29%), Positives = 110/240 (45%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 231 GKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFC 289
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ TV+ +A+P+ +PDPE+MA VK +F+ +
Sbjct: 290 FLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVE--WADPIEDPDPEVMAKVKVLFVRNLA 346
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 347 NTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 398
Query: 198 GNSKVKLRA----RLSNPMPKTQAVKGGMSGGFRI-G--HGSSRTFSRYGRGSGRAGHHF 250
N ++ + + QA K M + G H T R GRG GR G+ +
Sbjct: 399 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGR-GRG-GRGGYGY 456
>UNIPROTKB|F6XIK8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:10492 KO:K13160 OMA:GNMATEH Ensembl:ENSCAFT00000004869
EMBL:AAEX03008501 RefSeq:XP_003431698.1 ProteinModelPortal:F6XIK8
GeneID:474986 KEGG:cfa:474986 Uniprot:F6XIK8
Length = 562
Score = 204 (76.9 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 71/240 (29%), Positives = 110/240 (45%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 231 GKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFC 289
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ TV+ +A+P+ +PDPE+MA VK +F+ +
Sbjct: 290 FLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVE--WADPIEDPDPEVMAKVKVLFVRNLA 346
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 347 NTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 398
Query: 198 GNSKVKLRA----RLSNPMPKTQAVKGGMSGGFRI-G--HGSSRTFSRYGRGSGRAGHHF 250
N ++ + + QA K M + G H T R GRG GR G+ +
Sbjct: 399 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGR-GRG-GRGGYGY 456
>UNIPROTKB|O60506 [details] [associations]
symbol:SYNCRIP "Heterogeneous nuclear ribonucleoprotein Q"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISS] [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IDA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IMP] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0017148 "negative regulation of translation"
evidence=IDA;IMP] [GO:0071346 "cellular response to
interferon-gamma" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005783 GO:GO:0019048 GO:GO:0005654 GO:GO:0017148
GO:GO:0000166 EMBL:CH471051 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0071346 GO:GO:0000398 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
EMBL:AF155568 EMBL:AF037448 EMBL:AY034481 EMBL:AY034482
EMBL:AY034483 EMBL:AK222776 EMBL:AL136082 EMBL:BC015575
EMBL:BC032643 EMBL:BC040844 IPI:IPI00018140 IPI:IPI00402182
IPI:IPI00402183 IPI:IPI00402184 IPI:IPI00402185
RefSeq:NP_001153145.1 RefSeq:NP_001153146.1 RefSeq:NP_001153147.1
RefSeq:NP_001153148.1 RefSeq:NP_001153149.1 RefSeq:NP_001240700.1
RefSeq:NP_006363.4 UniGene:Hs.571177 PDB:2DGU PDBsum:2DGU
ProteinModelPortal:O60506 SMR:O60506 IntAct:O60506
MINT:MINT-2796763 STRING:O60506 PhosphoSite:O60506 PaxDb:O60506
PRIDE:O60506 DNASU:10492 Ensembl:ENST00000355238
Ensembl:ENST00000369622 GeneID:10492 KEGG:hsa:10492 UCSC:uc003pku.3
UCSC:uc003pkv.3 UCSC:uc003pkw.3 UCSC:uc003pkx.3 UCSC:uc003pkz.2
CTD:10492 GeneCards:GC06M086267 HGNC:HGNC:16918 HPA:CAB010895
neXtProt:NX_O60506 PharmGKB:PA134985065 InParanoid:O60506 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM PhylomeDB:O60506 ChiTaRS:SYNCRIP
EvolutionaryTrace:O60506 GenomeRNAi:10492 NextBio:39814
ArrayExpress:O60506 Bgee:O60506 CleanEx:HS_SYNCRIP
Genevestigator:O60506 GermOnline:ENSG00000135316 Uniprot:O60506
Length = 623
Score = 204 (76.9 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 71/240 (29%), Positives = 110/240 (45%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 231 GKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFC 289
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ TV+ +A+P+ +PDPE+MA VK +F+ +
Sbjct: 290 FLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVE--WADPIEDPDPEVMAKVKVLFVRNLA 346
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 347 NTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 398
Query: 198 GNSKVKLRA----RLSNPMPKTQAVKGGMSGGFRI-G--HGSSRTFSRYGRGSGRAGHHF 250
N ++ + + QA K M + G H T R GRG GR G+ +
Sbjct: 399 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGR-GRG-GRGGYGY 456
>UNIPROTKB|F2Z5D4 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:CU076072 Ensembl:ENSSSCT00000004748 Uniprot:F2Z5D4
Length = 627
Score = 204 (76.9 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 71/240 (29%), Positives = 110/240 (45%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 235 GKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFC 293
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ TV+ +A+P+ +PDPE+MA VK +F+ +
Sbjct: 294 FLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVE--WADPIEDPDPEVMAKVKVLFVRNLA 350
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 351 NTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 402
Query: 198 GNSKVKLRA----RLSNPMPKTQAVKGGMSGGFRI-G--HGSSRTFSRYGRGSGRAGHHF 250
N ++ + + QA K M + G H T R GRG GR G+ +
Sbjct: 403 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGR-GRG-GRGGYGY 460
>UNIPROTKB|F1MCT8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:DAAA02026516 EMBL:DAAA02026515 IPI:IPI00721347
Ensembl:ENSBTAT00000008774 Uniprot:F1MCT8
Length = 638
Score = 204 (76.9 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 71/240 (29%), Positives = 110/240 (45%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 246 GKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFC 304
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ TV+ +A+P+ +PDPE+MA VK +F+ +
Sbjct: 305 FLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVE--WADPIEDPDPEVMAKVKVLFVRNLA 361
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 362 NTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 413
Query: 198 GNSKVKLRA----RLSNPMPKTQAVKGGMSGGFRI-G--HGSSRTFSRYGRGSGRAGHHF 250
N ++ + + QA K M + G H T R GRG GR G+ +
Sbjct: 414 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGR-GRG-GRGGYGY 471
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 175 (66.7 bits), Expect = 9.8e-13, P = 9.8e-13
Identities = 67/247 (27%), Positives = 110/247 (44%)
Query: 23 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
G P E LF+G + T +++++ + +G + + ++ D Q + SRGF FV
Sbjct: 3 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFQKWGT--LTDCVVMRDPQTKR-SRGFGFV 59
Query: 81 MFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVP 137
+SC VDA A R K D P+R V RE + AH VK +F+ G+
Sbjct: 60 TYSCEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIK 111
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E +RD + YG + I + + + K++ + F+ F H+ + + +
Sbjct: 112 EDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTIN 169
Query: 198 G-NSKVKLRARLSNPMPKTQAVKG--GMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRAN 254
G N +VK +A M + +G G SG F +GHG + +G G G G N
Sbjct: 170 GHNCEVK-KALSKQEMQSAGSQRGCGGGSGNF-MGHGGN-----FGGGGGNFGRGGNSGY 222
Query: 255 FQRGRGF 261
+G G+
Sbjct: 223 GNQGGGY 229
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 188 (71.2 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 71/264 (26%), Positives = 119/264 (45%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 42 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---- 93
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 94 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 147
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 148 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 203
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQ 263
+S + Q + G GGF G +R GRG G + ++N+ +N+ +G+
Sbjct: 204 VAMSKEQYQQQQ-QWGSRGGFA---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGN 252
Query: 264 HGRNHSSRMGPTEYDFDNRYTEFH 287
+G N G YD+ Y ++
Sbjct: 253 YGYNSQGYGGYGGYDYTG-YNNYY 275
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 188 (71.2 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 75/267 (28%), Positives = 124/267 (46%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHV 86
ED +FVG + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 51 EDEGKMFVGGL--SW--DTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFK--- 103
Query: 87 DAMAAYKRL-QKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
+A + K + QK + G + + A+ ++ +P VK +F+ G+ P E +I
Sbjct: 104 EAESVEKVITQKEHKLNG---KVIDPKKAKAMKTKEP-----VKKIFVGGLSPDTPEEKI 155
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKL 204
R+ YG+V I L T KR+ + FI F E + I K++ + G SK ++
Sbjct: 156 REYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEP----VKKIMEKKYHNIGLSKCEV 211
Query: 205 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA--NF-QRGRGF 261
+ +S + Q GG GG+ +SR GRG G ++N+ N+ +G G
Sbjct: 212 KVAMSKEQYQQQQQWGGR-GGY-----TSR-----GRGRGGPNQNWNQGYGNYWNQGYGN 260
Query: 262 Y-QHGRNHSSRMGPTEYDFDNRYTEFH 287
Y +G N+ G YD+ Y ++
Sbjct: 261 YGNYGYNNQGYGGYGGYDYSG-YNNYY 286
>ZFIN|ZDB-GENE-030131-3104 [details] [associations]
symbol:syncripl "synaptotagmin binding,
cytoplasmic RNA interacting protein, like" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-3104
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GO:GO:0003676 HSSP:P09651
EMBL:BC046902 IPI:IPI00513002 RefSeq:NP_955973.1 UniGene:Dr.78854
ProteinModelPortal:Q802X5 SMR:Q802X5 STRING:Q802X5 GeneID:324384
KEGG:dre:324384 CTD:324384 InParanoid:Q802X5 NextBio:20808747
Uniprot:Q802X5
Length = 560
Score = 193 (73.0 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 54/177 (30%), Positives = 87/177 (49%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TK+ I ++ EG+ ++ L + +RGF
Sbjct: 232 GKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKV-TEGLNDVILYHQPDDKKKNRGFC 290
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 291 FLGYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVKVLFVRNLA 347
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
E + +G + R+ K KDY FI F + AV + ++ K+
Sbjct: 348 STVTEELLEKTFCQFGKLERV--------KKLKDYAFIHFEERDGAVKALAELHGKD 396
>UNIPROTKB|Q5R9H4 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9601
"Pongo abelii" [GO:0003727 "single-stranded RNA binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0030895
"apolipoprotein B mRNA editing enzyme complex" evidence=ISS]
[GO:0050821 "protein stabilization" evidence=ISS] [GO:0003725
"double-stranded RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821
GO:GO:0000166 CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:CR859414
RefSeq:NP_001127437.1 UniGene:Pab.12059 ProteinModelPortal:Q5R9H4
SMR:Q5R9H4 GeneID:100174508 KEGG:pon:100174508 InParanoid:Q5R9H4
Uniprot:Q5R9H4
Length = 587
Score = 193 (73.0 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 63/202 (31%), Positives = 96/202 (47%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I K + ++ + R K +DY F+ FS E AV + A+N K D
Sbjct: 240 LSTSEEMIE---KEFNNIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKALNGKVL-D 292
Query: 198 GNSKVKLRARLSNPMPKTQAVK 219
G+ + L+ P+ K V+
Sbjct: 293 GSP---IEVTLAKPVDKDSYVR 311
>ZFIN|ZDB-GENE-060824-3 [details] [associations]
symbol:a1cf "apobec1 complementation factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001159 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50137 SMART:SM00360
InterPro:IPR014720 ZFIN:ZDB-GENE-060824-3 GO:GO:0000166
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005622
GO:GO:0003725 EMBL:BX248126 IPI:IPI00486366
Ensembl:ENSDART00000010358 Bgee:E7F6B7 Uniprot:E7F6B7
Length = 588
Score = 193 (73.0 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 67/214 (31%), Positives = 99/214 (46%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K +GV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVLDVIVYPSAADKAKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + MA VK +++ +
Sbjct: 183 FVEYETHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMATVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E A+ +NA+N K
Sbjct: 240 LPTTEETIEKEFNSIKPGAVERV--------KKIRDYAFVHFSQREDAINAMNALNGKVI 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIG 229
DG+ + L+ P+ K V+ G R G
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVRYTRGTGGRGG 321
>UNIPROTKB|E2QWK5 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:AAEX03014929 RefSeq:XP_534776.2 ProteinModelPortal:E2QWK5
Ensembl:ENSCAFT00000024715 GeneID:477581 KEGG:cfa:477581
Uniprot:E2QWK5
Length = 590
Score = 193 (73.0 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 67/215 (31%), Positives = 100/215 (46%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TEGVVDVIVYPSAADKTRNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRTAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I K + ++ + R K +DY F+ FS E AV + A+N K D
Sbjct: 240 LSTSEEMIE---KEFNNIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKALNGKML-D 292
Query: 198 GNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGS 232
G+ + L+ P+ K V+ G G GS
Sbjct: 293 GSP---IEVTLAKPVDKDSYVRYTRGTG---GRGS 321
>RGD|619834 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=ISO;ISS]
[GO:0003727 "single-stranded RNA binding" evidence=ISO;ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0004131 "cytosine
deaminase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005720 "nuclear heterochromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=NAS;IMP]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;ISS;TAS] [GO:0050821 "protein stabilization"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
RGD:619834 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821 GO:GO:0000166
CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 GO:GO:0003727 GO:GO:0016554
GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC EMBL:AF290984 EMBL:AF442133
EMBL:AF442134 EMBL:AF442135 EMBL:AY028945 IPI:IPI00382071
IPI:IPI00679207 IPI:IPI00679214 IPI:IPI00679221 RefSeq:NP_596891.1
UniGene:Rn.162520 ProteinModelPortal:Q923K9 SMR:Q923K9
STRING:Q923K9 PhosphoSite:Q923K9 PRIDE:Q923K9
Ensembl:ENSRNOT00000052256 GeneID:170912 KEGG:rno:170912
UCSC:RGD:619834 eggNOG:NOG246793 InParanoid:Q923K9 OMA:HAGVHHI
NextBio:621377 ArrayExpress:Q923K9 Genevestigator:Q923K9
Uniprot:Q923K9
Length = 594
Score = 193 (73.0 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 63/204 (30%), Positives = 96/204 (47%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>UNIPROTKB|F1LNL0 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 RGD:619834 GO:GO:0050821 GO:GO:0000166
GO:GO:0030895 GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
IPI:IPI00679207 Ensembl:ENSRNOT00000067643 ArrayExpress:F1LNL0
Uniprot:F1LNL0
Length = 594
Score = 193 (73.0 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 63/204 (30%), Positives = 96/204 (47%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>MGI|MGI:1917115 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004131
"cytosine deaminase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005720 "nuclear heterochromatin" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=ISO]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;TAS] [GO:0050821 "protein stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 InterPro:IPR014720 MGI:MGI:1917115 GO:GO:0005783
GO:GO:0005737 GO:GO:0050821 GO:GO:0000166 CTD:29974
eggNOG:NOG258596 HOVERGEN:HBG051917 OMA:PGYAVPN GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:AY566862 EMBL:AY566863
EMBL:AY566864 EMBL:AC117816 EMBL:AC125019 EMBL:BC089622
IPI:IPI00357048 IPI:IPI00665782 IPI:IPI00667120
RefSeq:NP_001074543.1 UniGene:Mm.87538 ProteinModelPortal:Q5YD48
SMR:Q5YD48 STRING:Q5YD48 PhosphoSite:Q5YD48 PaxDb:Q5YD48
PRIDE:Q5YD48 Ensembl:ENSMUST00000075838 GeneID:69865 KEGG:mmu:69865
UCSC:uc008het.1 UCSC:uc008heu.1 UCSC:uc008hev.1
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 InParanoid:Q5YD48
OrthoDB:EOG4SXNCC NextBio:330501 Bgee:Q5YD48 CleanEx:MM_A1CF
Genevestigator:Q5YD48 GermOnline:ENSMUSG00000052595 Uniprot:Q5YD48
Length = 595
Score = 193 (73.0 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 63/204 (30%), Positives = 96/204 (47%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 184 (69.8 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 63/221 (28%), Positives = 101/221 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 260
Query: 211 PMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGH 248
+ Q +GG +G R G G + S YG+ S R GH
Sbjct: 261 EQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGH 299
>WB|WBGene00002000 [details] [associations]
symbol:hrp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0006915 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0048477 GO:GO:0003676
GO:GO:0040035 HSSP:P09651 EMBL:AL137227 UniGene:Cel.7321
GeneID:173086 KEGG:cel:CELE_F58D5.1 CTD:173086 NextBio:878217
RefSeq:NP_493049.2 ProteinModelPortal:Q9NLD1 SMR:Q9NLD1
DIP:DIP-25792N IntAct:Q9NLD1 MINT:MINT-1104835 STRING:Q9NLD1
PRIDE:Q9NLD1 EnsemblMetazoa:F58D5.1a.1 EnsemblMetazoa:F58D5.1a.2
EnsemblMetazoa:F58D5.1a.3 WormBase:F58D5.1a HOGENOM:HOG000020701
InParanoid:Q9NLD1 OMA:QVLVQFK ArrayExpress:Q9NLD1 Uniprot:Q9NLD1
Length = 611
Score = 185 (70.2 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 70/234 (29%), Positives = 110/234 (47%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGL-SRGF 77
GK S N LF+GNI T +K+ I ++LK + EGV ++ + S +E + +RGF
Sbjct: 269 GKPLKVNVSIANTRLFIGNIPKTKSKDEILEELKTHA-EGVVDVIVYSVPDNEKIKNRGF 327
Query: 78 AFVMFSCHVDAMAAYKRLQKPDVVFGHP-ERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FV F H A +++ + + P V V +AE EPD + M+ VK +++ +
Sbjct: 328 CFVDFIDHKTASDIKRKIAQHKI---RPFNADVYVDWAEHQEEPDEDTMSKVKVLYIRNI 384
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E ++ + K Y + R+ K KDY FI F+ + + + N KE
Sbjct: 385 KEAVTEEKLNELFKEYASLDRV--------KKVKDYAFIHFNERDDCLKAMEEWNGKEL- 435
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSG-GFR-IGHGSSRTFSRYG-RGSGRAG 247
+G + A L+ P P+ + K M G GF G G+ R G RG G+ G
Sbjct: 436 EGTV---VEASLAKP-PQEKKKKPVMRGRGFGGAGGGAGNHGQRGGQRGGGQWG 485
Score = 49 (22.3 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 19/48 (39%), Positives = 22/48 (45%)
Query: 239 YGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEY---DFDNRY 283
+G G AG+H R QRG G Q G N GP Y F+N Y
Sbjct: 462 FGGAGGGAGNHGQRGG-QRGGG--QWGGN----AGPGGYYPNHFNNGY 502
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 184 (69.8 bits), Expect = 6.0e-12, P = 6.0e-12
Identities = 73/275 (26%), Positives = 119/275 (43%)
Query: 21 RCGTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
+ G P E LF+G + T +++++ + +G + + ++ D Q + SRGF
Sbjct: 9 KVGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-SRGFG 65
Query: 79 FVMFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLD 134
FV +SC VDA A R K D P+R V RE + AH VK +F+
Sbjct: 66 FVTYSCVEEVDA-AMSARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVG 117
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
G+ +E +R+ + YG + I + + + K++ + F+ F H+ + +
Sbjct: 118 GIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYH 175
Query: 195 FSDG-NSKVKLRARLSNPMP--KTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFN 251
+G N +VK +A M +Q +GG SG F +G G+ F G G G G+
Sbjct: 176 TINGHNCEVK-KALSKQEMQTASSQRGRGGGSGNF-MGRGN---FGG-GGGGGGPGYGNP 229
Query: 252 RANFQRGRGFYQHGRNHSSRMGPTEYDFDNRYTEF 286
+ G G Y G N G Y Y +F
Sbjct: 230 GGGYGGGGGGYD-GYNEGGNFGGGNYGGSGNYNDF 263
>UNIPROTKB|F1SD00 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:CT954228
Ensembl:ENSSSCT00000011416 Uniprot:F1SD00
Length = 546
Score = 190 (71.9 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 62/202 (30%), Positives = 96/202 (47%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I K + ++ + R K +DY F+ F+ E AV + A+N K D
Sbjct: 240 LSTSEEMIE---KEFNNIKPGAVER---VKKIRDYAFVHFTNREDAVEAMKALNGKVL-D 292
Query: 198 GNSKVKLRARLSNPMPKTQAVK 219
G+ + L+ P+ K V+
Sbjct: 293 GSP---IEVTLAKPVDKDSYVR 311
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 179 (68.1 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 69/259 (26%), Positives = 117/259 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 32 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 78
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 79 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 137
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 138 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 193
Query: 211 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQHGRNH 268
+ Q + G GGF G +R GRG G + ++N+ +N+ +G+ +G N
Sbjct: 194 EQYQQQQ-QWGSRGGFA---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGNYGYNS 242
Query: 269 SSRMGPTEYDFDNRYTEFH 287
G YD+ Y ++
Sbjct: 243 QGYGGYGGYDYTG-YNNYY 260
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 185 (70.2 bits), Expect = 6.5e-12, P = 6.5e-12
Identities = 70/264 (26%), Positives = 119/264 (45%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + + ++ + G SRGF FV+F
Sbjct: 73 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF---- 124
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 125 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 178
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 179 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 234
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQ 263
+S + Q + G GGF G +R GRG G + ++N+ +N+ +G+
Sbjct: 235 VAMSKEQYQQQQ-QWGSRGGFA---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGS 283
Query: 264 HGRNHSSRMGPTEYDFDNRYTEFH 287
+G N G YD+ Y ++
Sbjct: 284 YGYNSQGYGGYGGYDYTG-YNSYY 306
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 164 (62.8 bits), Expect = 8.2e-12, Sum P(2) = 8.2e-12
Identities = 54/213 (25%), Positives = 102/213 (47%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LFVG + T + ++ + YG + + +V + Q + SR F FV +S +A +A
Sbjct: 12 LFVGGLNVQTTDDGLRNHFEQYGK--LTDCVVVQNQQLKR-SRCFGFVTYSSPDEADSAM 68
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+P ++ G+ + E +P E +A VK +F+ G+ +E+ +RD +
Sbjct: 69 SA--RPHILDGNNVELKRAVAREDAGKP--EALAKVKKIFIGGLKDDIEEDHLRDCFSQF 124
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPM 212
G V + + + T K++ +GF+ F +++A + + +G+ KV+++ L+
Sbjct: 125 GAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAV--VLKFHMINGH-KVEVKKALTKQE 181
Query: 213 PKTQAVKGGMSGGFRIGHGSSRTFSRYG-RGSG 244
+ +GG GG G G R + YG RG G
Sbjct: 182 MQAAGSRGGGRGGRGGGRGMGRPQNGYGGRGGG 214
Score = 58 (25.5 bits), Expect = 8.2e-12, Sum P(2) = 8.2e-12
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 220 GGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSR 271
GG GG+ G+G G G G + F Q+ G+ N+S R
Sbjct: 231 GGYGGGYGGGYGGGYGDQMEGYGGGNGYNDFGSGYGQQSSGYGPMKGNYSGR 282
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 166 (63.5 bits), Expect = 9.5e-12, P = 9.5e-12
Identities = 65/226 (28%), Positives = 107/226 (47%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDA-M 89
L +G + T +++++ + +G + + +++D Q E SRGF FV +SC VDA M
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGT--LTDCVVMTDPQTEH-SRGFGFVTYSCVEEVDAAM 57
Query: 90 AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRD 147
A+ VV P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 58 CAWPHKVDGRVV--EPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRD 108
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSK 201
+ YG + I + + + K++ + F+ F H+ + +AIN N E SK
Sbjct: 109 YFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVFQEHHAINRHNCEVKKAVSK 168
Query: 202 VKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 247
++++ + P Q GG SG F +G G + F R G G G G
Sbjct: 169 QEMQS--AGP----QRGHGGGSGNF-MGRGGN--FGRGGPGYGNQG 205
>UNIPROTKB|E1BB24 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:DAAA02044105 EMBL:DAAA02044106
IPI:IPI00711895 RefSeq:NP_001179648.1 UniGene:Bt.52151
ProteinModelPortal:E1BB24 Ensembl:ENSBTAT00000002223 GeneID:532175
KEGG:bta:532175 NextBio:20875624 Uniprot:E1BB24
Length = 533
Score = 188 (71.2 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 63/209 (30%), Positives = 99/209 (47%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGSVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 182 (69.1 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 76/272 (27%), Positives = 120/272 (44%)
Query: 23 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
G P E LF+G + T +++++ + +G + + ++ D Q + SRGF FV
Sbjct: 25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-SRGFGFV 81
Query: 81 MFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGV 136
+SC VDA A R K D P+R V RE + AH VK +F+ G+
Sbjct: 82 TYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGI 133
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
+E +RD + YG + I + + + K++ + F+ F H+ + +
Sbjct: 134 KEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTI 191
Query: 197 DG-NSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA 253
+G N +VK +A M +Q +GG SG F +G G + F G GR G+ R
Sbjct: 192 NGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNF-MGRGGN--FGGGGGNFGRGGNFGGRG 247
Query: 254 NFQRG----RGFYQHGRNHSSRMGPTEYDFDN 281
+ G RG Y G N+ G DF N
Sbjct: 248 GYGGGGGGSRGSYGGG-NYGG--GGNYNDFGN 276
>UNIPROTKB|E1B7G9 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:DAAA02058697 EMBL:DAAA02058698 IPI:IPI01002256
RefSeq:XP_003587913.1 ProteinModelPortal:E1B7G9
Ensembl:ENSBTAT00000033157 GeneID:100336715 KEGG:bta:100336715
Uniprot:E1B7G9
Length = 595
Score = 188 (71.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 62/202 (30%), Positives = 96/202 (47%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYENHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I K + ++ + R K +DY F+ F+ E AV + A+N K D
Sbjct: 240 LSTSEEMIE---KEFNNIKPGAVER---VKKIRDYAFVHFTNREDAVEAMKALNGKVL-D 292
Query: 198 GNSKVKLRARLSNPMPKTQAVK 219
G+ + L+ P+ K V+
Sbjct: 293 GSP---IEVTLAKPVDKDSYVR 311
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 181 (68.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 62/221 (28%), Positives = 101/221 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + + ++ + G SRGF FV+F
Sbjct: 97 MFIGGL--SW--DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF--------- 143
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 144 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 202
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 203 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 258
Query: 211 PMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGH 248
+ Q +GG +G R G G + S YG+ S R GH
Sbjct: 259 EQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGH 297
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 189 (71.6 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 57/196 (29%), Positives = 97/196 (49%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRGFAFVMFSC 84
S N LFVGNI + K+ I L+++G G+ + + S + +RGF F+ +
Sbjct: 241 SVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYES 297
Query: 85 HVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
H A A +RL + V+G + V +A+P EPD + M+ VK +++ + E+
Sbjct: 298 HKAASLAKRRLGTGRIKVWGCD---IIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSED 354
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203
++++Q + YG V R+ K KDY FI F ++AV + +N KE N +V
Sbjct: 355 KLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVS 406
Query: 204 LRARLSNPMPKTQAVK 219
L S+ K + ++
Sbjct: 407 LAKPPSDKKKKEEILR 422
>UNIPROTKB|B3KWU8 [details] [associations]
symbol:RBM46 "Putative uncharacterized protein MGC27016"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 EMBL:CH471056 CTD:166863 RefSeq:NP_659416.1
UniGene:Hs.133095 GeneID:166863 KEGG:hsa:166863 HGNC:HGNC:28401
PharmGKB:PA162400810 GenomeRNAi:166863 NextBio:88637 EMBL:AC009567
EMBL:AK125877 IPI:IPI00967774 SMR:B3KWU8 STRING:B3KWU8
Ensembl:ENST00000510397 UCSC:uc003iop.1 Uniprot:B3KWU8
Length = 470
Score = 186 (70.5 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 63/209 (30%), Positives = 99/209 (47%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>UNIPROTKB|E2QVD3 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 ProteinModelPortal:E2QVD3
Ensembl:ENSCAFT00000004869 Uniprot:E2QVD3
Length = 622
Score = 188 (71.2 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 58/182 (31%), Positives = 88/182 (48%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 231 GKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFC 289
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ TV+ +A+P+ +PDPE+MA VK +F+ +
Sbjct: 290 FLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVE--WADPIEDPDPEVMAKVKVLFVRNLA 346
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI--NAINNKEF 195
E + +G + R+ K KDY FI F + AV I N+K
Sbjct: 347 NTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKVIILQLENSKNL 398
Query: 196 SD 197
D
Sbjct: 399 KD 400
>UNIPROTKB|E2RTF9 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AAEX03010068 Ensembl:ENSCAFT00000037016 Uniprot:E2RTF9
Length = 485
Score = 186 (70.5 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 63/209 (30%), Positives = 99/209 (47%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>UNIPROTKB|B4DZ27 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 UniGene:Hs.133095 HGNC:HGNC:28401 EMBL:AC009567
EMBL:AK302720 IPI:IPI00967437 SMR:B4DZ27 STRING:B4DZ27
Ensembl:ENST00000514866 UCSC:uc011cim.1 Uniprot:B4DZ27
Length = 485
Score = 186 (70.5 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 63/209 (30%), Positives = 99/209 (47%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>UNIPROTKB|E2R8F4 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:AAEX03010068 RefSeq:XP_532699.1
ProteinModelPortal:E2R8F4 Ensembl:ENSCAFT00000013439 GeneID:475475
KEGG:cfa:475475 NextBio:20851314 Uniprot:E2R8F4
Length = 533
Score = 186 (70.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 63/209 (30%), Positives = 99/209 (47%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>UNIPROTKB|Q8TBY0 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:CH471056 CTD:166863 eggNOG:NOG235650
EMBL:BC028588 IPI:IPI00152304 RefSeq:NP_659416.1 UniGene:Hs.133095
HSSP:Q9NQ94 ProteinModelPortal:Q8TBY0 SMR:Q8TBY0 STRING:Q8TBY0
PhosphoSite:Q8TBY0 DMDM:74760436 PaxDb:Q8TBY0 PRIDE:Q8TBY0
Ensembl:ENST00000281722 GeneID:166863 KEGG:hsa:166863
UCSC:uc003ioo.3 GeneCards:GC04P155702 HGNC:HGNC:28401 HPA:HPA050601
neXtProt:NX_Q8TBY0 PharmGKB:PA162400810 InParanoid:Q8TBY0
OMA:YPGTKLT PhylomeDB:Q8TBY0 GenomeRNAi:166863 NextBio:88637
ArrayExpress:Q8TBY0 Bgee:Q8TBY0 CleanEx:HS_RBM46
Genevestigator:Q8TBY0 Uniprot:Q8TBY0
Length = 533
Score = 186 (70.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 63/209 (30%), Positives = 99/209 (47%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>UNIPROTKB|F1RYR7 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:CU855658 RefSeq:XP_003129173.1
UniGene:Ssc.94502 Ensembl:ENSSSCT00000009851 GeneID:100513804
KEGG:ssc:100513804 Uniprot:F1RYR7
Length = 533
Score = 186 (70.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 63/209 (30%), Positives = 99/209 (47%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>RGD|1560205 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1560205 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OrthoDB:EOG4FR0RW OMA:YPGTKLT IPI:IPI00368354
RefSeq:NP_001129189.1 UniGene:Rn.145040 ProteinModelPortal:D3ZAE2
Ensembl:ENSRNOT00000035846 GeneID:310548 KEGG:rno:310548
UCSC:RGD:1560205 NextBio:662134 Uniprot:D3ZAE2
Length = 533
Score = 186 (70.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 63/209 (30%), Positives = 99/209 (47%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>UNIPROTKB|E1BQR8 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0030895 "apolipoprotein B mRNA editing enzyme
complex" evidence=IEA] [GO:0050821 "protein stabilization"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720 GO:GO:0050821
GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:AADN02035165
IPI:IPI00576681 ProteinModelPortal:E1BQR8
Ensembl:ENSGALT00000005974 Uniprot:E1BQR8
Length = 540
Score = 185 (70.2 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 61/202 (30%), Positives = 97/202 (48%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K +GV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I K + ++ + + R K +DY F+ F+ E AV + A+N K D
Sbjct: 240 LSTTEETIE---KEFNNIKQGAVER---VKKIRDYAFVHFNKREDAVHAMKALNGKVL-D 292
Query: 198 GNSKVKLRARLSNPMPKTQAVK 219
G+ + L+ P+ K V+
Sbjct: 293 GSP---IEVTLAKPVDKDSYVR 311
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 178 (67.7 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 67/258 (25%), Positives = 118/258 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LFVG + T E ++ + YG + + +V + Q SR F FV +S +A AA
Sbjct: 8 LFVGGLNVQTTDEGLRAHFEQYGQ--LTDCVVVMN-QPLQRSRCFGFVTYSSTEEADAAM 64
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+P +V G+ + E +P E++A VK +F+ G+ ++ ++D +
Sbjct: 65 SA--RPHIVDGNNVDLKRAVAREDAGKP--EMLAKVKKIFVGGLKDDIEDEHLQDYFSQF 120
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP- 211
G + + + + T K++ +GF+ F +++A A+ K S KV+++ L+
Sbjct: 121 GPIEKAQVITDKDTGKKRGFGFVYFDDNDSAD---KAVVMKFHSICGHKVEVKKALTKQE 177
Query: 212 MPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQ---HGRNH 268
M T +GG GG +G GS F GRG + + F G+ +G +
Sbjct: 178 MQSTGGGRGGR-GGRGMGRGSG--FGGGGRGGYYNDYGYQNNGFGNNSGYDSQNGYGGGY 234
Query: 269 SSRMGPTEYDFDNRYTEF 286
S +MG Y N Y++F
Sbjct: 235 SDQMGGG-YGNGNGYSDF 251
>MGI|MGI:3645057 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:3645057 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW OMA:YPGTKLT EMBL:AC158935 IPI:IPI00672754
RefSeq:NP_001139800.1 UniGene:Mm.265114 ProteinModelPortal:P86049
SMR:P86049 PhosphoSite:P86049 PaxDb:P86049 PRIDE:P86049
Ensembl:ENSMUST00000048647 GeneID:633285 KEGG:mmu:633285
UCSC:uc012cqu.1 NextBio:422664 Bgee:P86049 Genevestigator:P86049
Uniprot:P86049
Length = 533
Score = 184 (69.8 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 63/209 (30%), Positives = 99/209 (47%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFSKFKPGAVERV--------KKLRDYAFVHFFHREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 178 (67.7 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 66/256 (25%), Positives = 113/256 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 204
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 205 RARLSNPMPKTQAVK--GGMSGGF--RIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRG 260
+ S+ ++ + GG GGF G FS G G G G + +NF G
Sbjct: 187 ASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGIGDGYNGFGNDGSNFGGGGS 246
Query: 261 FYQHGR--NHSSRMGP 274
+ G N SS GP
Sbjct: 247 YNDFGNYNNQSSNFGP 262
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 178 (67.7 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 70/248 (28%), Positives = 111/248 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T+++++ + +G + + ++ D ++ SRGF FV +S VDA A
Sbjct: 15 LFIGGLSFETTEDSLRAHFEQWGK--LTDCVVMRDPANKR-SRGFGFVTYSSVSEVDA-A 70
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V E +P + VK +F+ G+ +E IR+ +
Sbjct: 71 MTARPHKVDGRVVEPKRAVS---REDSNKPGAHLT--VKKIFVGGIKEDTEEYHIREYFE 125
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 210
YG + I + ST K++ + F+ F H+ V I A + N +V+ +A
Sbjct: 126 CYGKIETIDIMEERSTGKKRGFCFVTFDDHDT-VDKIVAQKYHTINSHNCEVR-KALPKQ 183
Query: 211 PMPKT--QAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH-FNR--ANFQRGRGFYQHG 265
M + Q +GG G F G G + F R G G GR G +N N+ G G Y G
Sbjct: 184 EMQSSSNQRYRGGGGGNFT-GRGGN--FGRGGYGGGRGGGDGYNGFGGNYGGGPGGYGGG 240
Query: 266 RNHSSRMG 273
R G
Sbjct: 241 RGGYGNFG 248
>UNIPROTKB|F8W9F8 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
IPI:IPI00981528 HGNC:HGNC:24086 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 ProteinModelPortal:F8W9F8 SMR:F8W9F8
Ensembl:ENST00000395489 UCSC:uc010qho.2 ArrayExpress:F8W9F8
Bgee:F8W9F8 Uniprot:F8W9F8
Length = 587
Score = 184 (69.8 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 62/202 (30%), Positives = 95/202 (47%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 117 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 175
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GH + V +AEP E D + M+ VK +++ +
Sbjct: 176 FVEYESHRAAAMARRKLLPGRIQLWGHG---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 232
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I K + ++ + R K +DY F+ FS E AV + A+N K D
Sbjct: 233 LSTSEEMIE---KEFNNIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKALNGKVL-D 285
Query: 198 GNSKVKLRARLSNPMPKTQAVK 219
G+ + L+ P+ K V+
Sbjct: 286 GSP---IEVTLAKPVDKDSYVR 304
>UNIPROTKB|Q9NQ94 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0030895 "apolipoprotein B
mRNA editing enzyme complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0050821 "protein stabilization" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016554 "cytidine
to uridine editing" evidence=TAS] [GO:0016556 "mRNA modification"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0010467
GO:GO:0050821 GO:GO:0005654 GO:GO:0000166 EMBL:AJ272078
EMBL:AJ272079 EMBL:AF209192 EMBL:AF271789 EMBL:AF271790
EMBL:AK000324 EMBL:AK291982 EMBL:AL512366 EMBL:AL589794
EMBL:CH471083 EMBL:BC130519 EMBL:BC144196 IPI:IPI00071360
IPI:IPI00148257 IPI:IPI00299499 IPI:IPI00657723 IPI:IPI00657770
IPI:IPI00981528 RefSeq:NP_001185747.1 RefSeq:NP_001185748.1
RefSeq:NP_001185749.1 RefSeq:NP_055391.2 RefSeq:NP_620310.1
RefSeq:NP_620311.1 UniGene:Hs.282795 PDB:2CPD PDBsum:2CPD
ProteinModelPortal:Q9NQ94 SMR:Q9NQ94 IntAct:Q9NQ94 STRING:Q9NQ94
PhosphoSite:Q9NQ94 DMDM:74761651 PaxDb:Q9NQ94 PRIDE:Q9NQ94
Ensembl:ENST00000282641 Ensembl:ENST00000373993
Ensembl:ENST00000373995 Ensembl:ENST00000373997
Ensembl:ENST00000374001 Ensembl:ENST00000395495 GeneID:29974
KEGG:hsa:29974 UCSC:uc001jjh.3 UCSC:uc001jji.3 UCSC:uc001jjj.3
CTD:29974 GeneCards:GC10M052566 HGNC:HGNC:24086 HPA:HPA037779
neXtProt:NX_Q9NQ94 PharmGKB:PA162375098 eggNOG:NOG258596
HOVERGEN:HBG051917 InParanoid:Q9NQ94 OMA:PGYAVPN PhylomeDB:Q9NQ94
Reactome:REACT_1675 EvolutionaryTrace:Q9NQ94 GenomeRNAi:29974
NextBio:52719 ArrayExpress:Q9NQ94 Bgee:Q9NQ94 CleanEx:HS_A1CF
Genevestigator:Q9NQ94 GermOnline:ENSG00000148584 GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
Uniprot:Q9NQ94
Length = 594
Score = 184 (69.8 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 62/202 (30%), Positives = 95/202 (47%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GH + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHG---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I K + ++ + R K +DY F+ FS E AV + A+N K D
Sbjct: 240 LSTSEEMIE---KEFNNIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKALNGKVL-D 292
Query: 198 GNSKVKLRARLSNPMPKTQAVK 219
G+ + L+ P+ K V+
Sbjct: 293 GSP---IEVTLAKPVDKDSYVR 311
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 178 (67.7 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 71/263 (26%), Positives = 119/263 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G+ + + +V D + SRGF FV ++ VDA A
Sbjct: 25 LFIGGLSFETTDESLRSHFEQWGM--LTDC-VVMD-PNTKRSRGFGFVTYTTVEEVDA-A 79
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R QK D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 80 MNARPQKMDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 134
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS-KVKLRARLS 209
YG + I + + + K++ + F+ F H++ ++ I +++ GN ++R LS
Sbjct: 135 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS----VDKIVIQKYHTGNGHNCEVRKALS 190
Query: 210 NP-MPKTQAVKGGMSGGFRIGHGSSRTFS---RYGRG---SGRAGHHFNRAN---FQRGR 259
M + + G SG G G F +GRG SGR G +R G
Sbjct: 191 KQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFAGSRGGGGYAGSGD 250
Query: 260 GFYQHGRNHSSRMGPTEY-DFDN 281
G+ G + S+ G Y DF N
Sbjct: 251 GYNGFGNDGSNFGGGGSYNDFGN 273
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 178 (67.7 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 79/289 (27%), Positives = 123/289 (42%)
Query: 23 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
G P E LF+G + T +++++ + +G + + ++ D Q + SRGF FV
Sbjct: 3 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-SRGFGFV 59
Query: 81 MFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGV 136
+SC VDA A R K D P+R V RE + AH VK +F+ G+
Sbjct: 60 TYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGI 111
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
+E +RD + YG + I + + + K++ + F+ F H+ + +
Sbjct: 112 KEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTI 169
Query: 197 DG-NSKVKLRARLSNPMPK--TQAVKGGMSGGF--RIGH--GSSRTFSR---YGRGSG-- 244
+G N +VK +A M +Q +GG SG F R G+ G F R YG G G
Sbjct: 170 NGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNYGGGPGYS 228
Query: 245 -RAGH------HFNRANFQRGRGFYQHGRNHSSRMGPTEYDFDNRYTEF 286
R G+ + N+ G G Y G N G Y Y +F
Sbjct: 229 SRGGYGGGGPGYGNQGGGYGGGGGYD-GYNEGGNFGGGNYGGGGNYNDF 276
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 179 (68.1 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 69/259 (26%), Positives = 117/259 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 260
Query: 211 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQHGRNH 268
+ Q + G GGF G +R GRG G + ++N+ +N+ +G+ +G N
Sbjct: 261 EQYQQQQ-QWGSRGGFA---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGNYGYNS 309
Query: 269 SSRMGPTEYDFDNRYTEFH 287
G YD+ Y ++
Sbjct: 310 QGYGGYGGYDYTG-YNNYY 327
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 179 (68.1 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 69/259 (26%), Positives = 117/259 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 260
Query: 211 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQHGRNH 268
+ Q + G GGF G +R GRG G + ++N+ +N+ +G+ +G N
Sbjct: 261 EQYQQQQ-QWGSRGGFA---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGNYGYNS 309
Query: 269 SSRMGPTEYDFDNRYTEFH 287
G YD+ Y ++
Sbjct: 310 QGYGGYGGYDYTG-YNNYY 327
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 179 (68.1 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 69/259 (26%), Positives = 117/259 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 260
Query: 211 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQHGRNH 268
+ Q + G GGF G +R GRG G + ++N+ +N+ +G+ +G N
Sbjct: 261 EQYQQQQ-QWGSRGGFA---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGNYGYNS 309
Query: 269 SSRMGPTEYDFDNRYTEFH 287
G YD+ Y ++
Sbjct: 310 QGYGGYGGYDYTG-YNNYY 327
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 179 (68.1 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 69/259 (26%), Positives = 117/259 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 260
Query: 211 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQHGRNH 268
+ Q + G GGF G +R GRG G + ++N+ +N+ +G+ +G N
Sbjct: 261 EQYQQQQ-QWGSRGGFA---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGNYGYNS 309
Query: 269 SSRMGPTEYDFDNRYTEFH 287
G YD+ Y ++
Sbjct: 310 QGYGGYGGYDYTG-YNNYY 327
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 179 (68.1 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 73/256 (28%), Positives = 115/256 (44%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCH 85
S ++ TL + N+ + T+E ++ E E + Q++ G S+G+AF+ F+
Sbjct: 136 SGESKTLVLSNLAYSATEETLQ--------EVFEKATFIKVPQNQNGKSKGYAFIEFASF 187
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
DA A K ++ G R +++ P P+ KT+F+ G+ E +
Sbjct: 188 EDAKEALNSCNKREIE-G---RAIRLELQGPRGSPNARSQPS-KTLFVKGLSEETTEETL 242
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
++ G IR + + T K +GF+DF++ E A A A+ + E DGN KV L
Sbjct: 243 KESFDGS---IRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL- 296
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGS--GRAGHHFN-RANFQRGRGFY 262
PK + GG GG R G G R R GRG GR F R F+ GRG
Sbjct: 297 ---DWAKPKGEGGFGGRGGG-RGGFGG-RGGGRGGRGGFGGRGRGGFGGRGGFRGGRG-- 349
Query: 263 QHGRNHSSRMGPTEYD 278
G +H + T+++
Sbjct: 350 GGGGDHKPQGKKTKFE 365
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 166 (63.5 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 61/255 (23%), Positives = 111/255 (43%)
Query: 24 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 83
T P E LF+G + T E +K + +G + ++ ++ D + + SRGF F+ +S
Sbjct: 25 TEP-EHMRKLFIGGLDYRTTDENLKAHFEKWG--NIVDVVVMKDPRTKR-SRGFGFITYS 80
Query: 84 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKE 142
H +M + +P + G R V+ A P ++ D P A VK +F+ + E
Sbjct: 81 -H-SSMIDEAQKSRPHKIDG---RVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDE 135
Query: 143 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202
IRD + +G+++ I + + T K++ + F++F ++ + K+ V
Sbjct: 136 QSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVD---KVVLQKQHQLNGKMV 192
Query: 203 KLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFY 262
++ L PK +GG GG R G G +R G G G+ N+ G +
Sbjct: 193 DVKKAL----PKQNDQQGG--GGGRGGPGGRAGGNRGNMGGGNYGNQNGGGNWNNGGNNW 246
Query: 263 QHGRNHSSRMGPTEY 277
+ R + G +
Sbjct: 247 GNNRGGNDNWGNNSF 261
Score = 52 (23.4 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 327 GPDRGYGEHHSYRRQPFSQGEDF 349
GP RG G ++ R QP+ G F
Sbjct: 317 GPQRGGGNFNNNRMQPYQGGGGF 339
>UNIPROTKB|F1NJQ8 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AADN02016545 IPI:IPI00822755 ProteinModelPortal:F1NJQ8
Ensembl:ENSGALT00000038887 Uniprot:F1NJQ8
Length = 414
Score = 179 (68.1 bits), Expect = 6.1e-11, P = 6.1e-11
Identities = 64/206 (31%), Positives = 97/206 (47%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I KE I +++K EGV ++ + D +RGFA
Sbjct: 58 GRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRI-TEGVVDVIVCPDATDRTKNRGFA 116
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
FV + H A A +RL P F R V+V +A P +E D E M VK +++ +
Sbjct: 117 FVEYESHRAAAMARRRLL-PGT-FQLWGRAVQVDWACPEKEVDAETMRRVKVLYVRNLMI 174
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198
E+ I+ + + R+V K +DY F+ F E AVA ++ +N K DG
Sbjct: 175 STTEDTIKAEFNKFKP--RVV----ERVKKLRDYAFVHFYNREDAVAAMSIMNGKCI-DG 227
Query: 199 NSKVKLRARLSNPMPKTQAVKGGMSG 224
S + L+ P+ K K ++G
Sbjct: 228 AS---IEVTLAKPVNKESTWKQHLNG 250
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 178 (67.7 bits), Expect = 6.2e-11, P = 6.2e-11
Identities = 68/247 (27%), Positives = 111/247 (44%)
Query: 23 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
G P E LF+G + T +++++ + +G + + ++ D Q + SRGF FV
Sbjct: 25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-SRGFGFV 81
Query: 81 MFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGV 136
+SC VDA A R K D P+R V RE + AH VK +F+ G+
Sbjct: 82 TYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGI 133
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
+E +RD + YG + I + + + K++ + F+ F H+ + +
Sbjct: 134 KEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTI 191
Query: 197 DG-NSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA 253
+G N +VK +A M +Q +GG SG F +G G + F G GR G+ R
Sbjct: 192 NGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNF-MGRGGN--FGGGGGNFGRGGNFGGRG 247
Query: 254 NFQRGRG 260
+ G G
Sbjct: 248 GYGGGGG 254
Score = 155 (59.6 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 61/199 (30%), Positives = 89/199 (44%)
Query: 74 SRGFAFVMFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VK 129
SRGF FV +SC VDA A R K D P+R V RE + AH VK
Sbjct: 75 SRGFGFVTYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVK 126
Query: 130 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 189
+F+ G+ +E +RD + YG + I + + + K++ + F+ F H+ +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 184
Query: 190 INNKEFSDG-NSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRA 246
+ +G N +VK +A M +Q +GG SG F +G G + +G G G
Sbjct: 185 VQKYHTINGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNF-MGRGGN-----FGGGGGNF 237
Query: 247 GHHFNRANFQRGRGFYQHG 265
G NF GRG Y G
Sbjct: 238 GRG---GNFG-GRGGYGGG 252
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 178 (67.7 bits), Expect = 6.3e-11, P = 6.3e-11
Identities = 68/247 (27%), Positives = 111/247 (44%)
Query: 23 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
G P E LF+G + T +++++ + +G + + ++ D Q + SRGF FV
Sbjct: 25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-SRGFGFV 81
Query: 81 MFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGV 136
+SC VDA A R K D P+R V RE + AH VK +F+ G+
Sbjct: 82 TYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGI 133
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
+E +RD + YG + I + + + K++ + F+ F H+ + +
Sbjct: 134 KEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTI 191
Query: 197 DG-NSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA 253
+G N +VK +A M +Q +GG SG F +G G + F G GR G+ R
Sbjct: 192 NGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNF-MGRGGN--FGGGGGNFGRGGNFGGRG 247
Query: 254 NFQRGRG 260
+ G G
Sbjct: 248 GYGGGGG 254
Score = 155 (59.6 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 61/199 (30%), Positives = 89/199 (44%)
Query: 74 SRGFAFVMFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VK 129
SRGF FV +SC VDA A R K D P+R V RE + AH VK
Sbjct: 75 SRGFGFVTYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVK 126
Query: 130 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 189
+F+ G+ +E +RD + YG + I + + + K++ + F+ F H+ +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 184
Query: 190 INNKEFSDG-NSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRA 246
+ +G N +VK +A M +Q +GG SG F +G G + +G G G
Sbjct: 185 VQKYHTINGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNF-MGRGGN-----FGGGGGNF 237
Query: 247 GHHFNRANFQRGRGFYQHG 265
G NF GRG Y G
Sbjct: 238 GRG---GNFG-GRGGYGGG 252
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 178 (67.7 bits), Expect = 6.3e-11, P = 6.3e-11
Identities = 68/247 (27%), Positives = 111/247 (44%)
Query: 23 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
G P E LF+G + T +++++ + +G + + ++ D Q + SRGF FV
Sbjct: 25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-SRGFGFV 81
Query: 81 MFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGV 136
+SC VDA A R K D P+R V RE + AH VK +F+ G+
Sbjct: 82 TYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGI 133
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
+E +RD + YG + I + + + K++ + F+ F H+ + +
Sbjct: 134 KEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTI 191
Query: 197 DG-NSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA 253
+G N +VK +A M +Q +GG SG F +G G + F G GR G+ R
Sbjct: 192 NGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNF-MGRGGN--FGGGGGNFGRGGNFGGRG 247
Query: 254 NFQRGRG 260
+ G G
Sbjct: 248 GYGGGGG 254
Score = 155 (59.6 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 61/199 (30%), Positives = 89/199 (44%)
Query: 74 SRGFAFVMFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VK 129
SRGF FV +SC VDA A R K D P+R V RE + AH VK
Sbjct: 75 SRGFGFVTYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVK 126
Query: 130 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 189
+F+ G+ +E +RD + YG + I + + + K++ + F+ F H+ +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 184
Query: 190 INNKEFSDG-NSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRA 246
+ +G N +VK +A M +Q +GG SG F +G G + +G G G
Sbjct: 185 VQKYHTINGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNF-MGRGGN-----FGGGGGNF 237
Query: 247 GHHFNRANFQRGRGFYQHG 265
G NF GRG Y G
Sbjct: 238 GRG---GNFG-GRGGYGGG 252
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 178 (67.7 bits), Expect = 6.3e-11, P = 6.3e-11
Identities = 68/247 (27%), Positives = 111/247 (44%)
Query: 23 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
G P E LF+G + T +++++ + +G + + ++ D Q + SRGF FV
Sbjct: 25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-SRGFGFV 81
Query: 81 MFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGV 136
+SC VDA A R K D P+R V RE + AH VK +F+ G+
Sbjct: 82 TYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGI 133
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
+E +RD + YG + I + + + K++ + F+ F H+ + +
Sbjct: 134 KEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTI 191
Query: 197 DG-NSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA 253
+G N +VK +A M +Q +GG SG F +G G + F G GR G+ R
Sbjct: 192 NGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNF-MGRGGN--FGGGGGNFGRGGNFGGRG 247
Query: 254 NFQRGRG 260
+ G G
Sbjct: 248 GYGGGGG 254
Score = 155 (59.6 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 61/199 (30%), Positives = 89/199 (44%)
Query: 74 SRGFAFVMFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VK 129
SRGF FV +SC VDA A R K D P+R V RE + AH VK
Sbjct: 75 SRGFGFVTYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVK 126
Query: 130 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 189
+F+ G+ +E +RD + YG + I + + + K++ + F+ F H+ +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 184
Query: 190 INNKEFSDG-NSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRA 246
+ +G N +VK +A M +Q +GG SG F +G G + +G G G
Sbjct: 185 VQKYHTINGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNF-MGRGGN-----FGGGGGNF 237
Query: 247 GHHFNRANFQRGRGFYQHG 265
G NF GRG Y G
Sbjct: 238 GRG---GNFG-GRGGYGGG 252
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 171 (65.3 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 68/259 (26%), Positives = 116/259 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 1 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 47
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+
Sbjct: 48 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGA 106
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 107 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 162
Query: 211 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQHGRNH 268
+ Q + G GGF G +R GRG G + ++N+ +N+ +G+ +G N
Sbjct: 163 EQYQQQQ-QWGSRGGFV---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGNYGYNS 211
Query: 269 SSRMGPTEYDFDNRYTEFH 287
G YD+ Y ++
Sbjct: 212 QGYGGYGGYDYTG-YNNYY 229
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 171 (65.3 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 68/259 (26%), Positives = 116/259 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 2 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 48
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+
Sbjct: 49 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGA 107
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 108 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 163
Query: 211 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQHGRNH 268
+ Q + G GGF G +R GRG G + ++N+ +N+ +G+ +G N
Sbjct: 164 EQYQQQQ-QWGSRGGFV---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGNYGYNS 212
Query: 269 SSRMGPTEYDFDNRYTEFH 287
G YD+ Y ++
Sbjct: 213 QGYGGYGGYDYTG-YNNYY 230
>UNIPROTKB|E1BV69 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YPGTKLT EMBL:AADN02016545 IPI:IPI00595715
ProteinModelPortal:E1BV69 Ensembl:ENSGALT00000015094 Uniprot:E1BV69
Length = 467
Score = 179 (68.1 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 64/206 (31%), Positives = 97/206 (47%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I KE I +++K EGV ++ + D +RGFA
Sbjct: 129 GRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRI-TEGVVDVIVCPDATDRTKNRGFA 187
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
FV + H A A +RL P F R V+V +A P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRRLL-PGT-FQLWGRAVQVDWACPEKEVDAETMRRVKVLYVRNLMI 245
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198
E+ I+ + + R+V K +DY F+ F E AVA ++ +N K DG
Sbjct: 246 STTEDTIKAEFNKFKP--RVV----ERVKKLRDYAFVHFYNREDAVAAMSIMNGKCI-DG 298
Query: 199 NSKVKLRARLSNPMPKTQAVKGGMSG 224
S + L+ P+ K K ++G
Sbjct: 299 AS---IEVTLAKPVNKESTWKQHLNG 321
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 173 (66.0 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 69/266 (25%), Positives = 117/266 (43%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 11 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-SRGFGFVTYSCVEEVDA-A 66
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +R+
Sbjct: 67 MSARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLREY 119
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG-NSKVKLRAR 207
+ YG + I + + + K++ + F+ F H+ + + +G N +VK +A
Sbjct: 120 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTINGHNCEVK-KAL 176
Query: 208 LSNPMPKTQAVKG-GMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRG------RG 260
M + +G G SG F +G G+ F G GR G+ R + G RG
Sbjct: 177 SKQEMQTASSQRGKGGSGNF-MGRGN---FGGGGGNFGRGGNFGGRGGYGGGGGGGGSRG 232
Query: 261 FYQHGRNHSSRMGPTEYDFDNRYTEF 286
+ G ++ G Y Y +F
Sbjct: 233 SFGGGDGYNG-FGDGNYGGSGNYNDF 257
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 176 (67.0 bits), Expect = 8.7e-11, P = 8.7e-11
Identities = 68/259 (26%), Positives = 117/259 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + + ++ + G SRGF FV+F
Sbjct: 97 MFIGGL--SW--DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF--------- 143
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 144 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 202
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 203 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 258
Query: 211 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQHGRNH 268
+ Q + G GGF G +R GRG G + ++N+ +N+ +G+ +G N
Sbjct: 259 EQYQQQQ-QWGSRGGFA---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGSYGYNS 307
Query: 269 SSRMGPTEYDFDNRYTEFH 287
G YD+ Y ++
Sbjct: 308 QGYGGYGGYDYTG-YNSYY 325
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 176 (67.0 bits), Expect = 8.7e-11, P = 8.7e-11
Identities = 68/259 (26%), Positives = 117/259 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + + ++ + G SRGF FV+F
Sbjct: 97 MFIGGL--SW--DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF--------- 143
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 144 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 202
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 203 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 258
Query: 211 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQHGRNH 268
+ Q + G GGF G +R GRG G + ++N+ +N+ +G+ +G N
Sbjct: 259 EQYQQQQ-QWGSRGGFA---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGSYGYNS 307
Query: 269 SSRMGPTEYDFDNRYTEFH 287
G YD+ Y ++
Sbjct: 308 QGYGGYGGYDYTG-YNSYY 325
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 174 (66.3 bits), Expect = 8.9e-11, P = 8.9e-11
Identities = 67/261 (25%), Positives = 116/261 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 204
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 205 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ---RGRGF 261
+ S+ ++ + G GG G G + F R G SGR G +R G G+
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY 244
Query: 262 YQHGRNHSSRMGPTEY-DFDN 281
G + S+ G Y DF N
Sbjct: 245 NGFGNDGSNFGGGGSYNDFGN 265
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 174 (66.3 bits), Expect = 9.6e-11, P = 9.6e-11
Identities = 63/256 (24%), Positives = 112/256 (43%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 22 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASKR-SRGFGFVTFSSMAEVDAAM 78
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+P + G + E +P + VK +F+ G+ +E+ +RD + Y
Sbjct: 79 AA--RPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEY 134
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP- 211
G + I + + + K++ +GF+ F H+ + + +G++ ++R LS
Sbjct: 135 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQE 191
Query: 212 MPKTQAVKGGMSGGFRIGHGSSRTFS-RYGRGSGRAGHHFNRANFQRGRGF---YQ-HGR 266
M + Q+ + G G F G G SR +G G G + + GRGF Y +G
Sbjct: 192 MQEVQSSRSGRGGNF--GFGDSRGGGGNFGPGPG-SNFRGGSDGYGSGRGFGDGYNGYGG 248
Query: 267 NHSSRMGPTEY-DFDN 281
G Y DF N
Sbjct: 249 GPGGNYGSGNYNDFGN 264
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 174 (66.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 67/261 (25%), Positives = 116/261 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 204
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 205 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ---RGRGF 261
+ S+ ++ + G GG G G + F R G SGR G +R G G+
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY 244
Query: 262 YQHGRNHSSRMGPTEY-DFDN 281
G + S+ G Y DF N
Sbjct: 245 NGFGNDGSNFGGGGSYNDFGN 265
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 174 (66.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 67/261 (25%), Positives = 116/261 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 204
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 205 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ---RGRGF 261
+ S+ ++ + G GG G G + F R G SGR G +R G G+
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY 244
Query: 262 YQHGRNHSSRMGPTEY-DFDN 281
G + S+ G Y DF N
Sbjct: 245 NGFGNDGSNFGGGGSYNDFGN 265
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 174 (66.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 67/261 (25%), Positives = 116/261 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 204
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 205 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ---RGRGF 261
+ S+ ++ + G GG G G + F R G SGR G +R G G+
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY 244
Query: 262 YQHGRNHSSRMGPTEY-DFDN 281
G + S+ G Y DF N
Sbjct: 245 NGFGNDGSNFGGGGSYNDFGN 265
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 174 (66.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 67/261 (25%), Positives = 116/261 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 204
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 205 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ---RGRGF 261
+ S+ ++ + G GG G G + F R G SGR G +R G G+
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY 244
Query: 262 YQHGRNHSSRMGPTEY-DFDN 281
G + S+ G Y DF N
Sbjct: 245 NGFGNDGSNFGGGGSYNDFGN 265
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 174 (66.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 67/261 (25%), Positives = 116/261 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 204
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 205 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ---RGRGF 261
+ S+ ++ + G GG G G + F R G SGR G +R G G+
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY 244
Query: 262 YQHGRNHSSRMGPTEY-DFDN 281
G + S+ G Y DF N
Sbjct: 245 NGFGNDGSNFGGGGSYNDFGN 265
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 173 (66.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 67/255 (26%), Positives = 113/255 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 204
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 205 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGR--GFY 262
+ S+ ++ + G GG G G + F R G SGR G +R G G Y
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGGSY 244
Query: 263 QH-GR--NHSSRMGP 274
G N SS GP
Sbjct: 245 NDFGNYNNQSSNFGP 259
Score = 114 (45.2 bits), Expect = 0.00065, P = 0.00065
Identities = 45/172 (26%), Positives = 72/172 (41%)
Query: 118 REPDPEIMAH--VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 175
RE AH VK +F+ G+ +E+ +RD + YG + I + + + K++ + F+
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
Query: 176 DFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP-MPKTQAVKGGMSGGFRIGHGSSR 234
F H++ + I +G++ ++R LS M + + G SG G G
Sbjct: 152 TFDDHDSVDKIV--IQKYHTVNGHN-CEVRKALSKQEMASASSSQRGRSGSGNFG-G--- 204
Query: 235 TFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEYDFDNRYTEF 286
GRG G G+ NF RG F G SR G Y +F
Sbjct: 205 -----GRGGGFGGND----NFGRGGNFSGRGGFGGSRGGGGYGGSGGSYNDF 247
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 174 (66.3 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 67/261 (25%), Positives = 116/261 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 204
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 205 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ---RGRGF 261
+ S+ ++ + G GG G G + F R G SGR G +R G G+
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY 244
Query: 262 YQHGRNHSSRMGPTEY-DFDN 281
G + S+ G Y DF N
Sbjct: 245 NGFGNDGSNFGGGGSYNDFGN 265
Score = 37 (18.1 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 332 YGEHHSYRRQPFSQGEDFDR 351
YG Y +P +QGE+ R
Sbjct: 289 YGGGGQYFAKPRNQGEESQR 308
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 175 (66.7 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 61/232 (26%), Positives = 108/232 (46%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LFVG + T E +G E V+++ + I G RGF FV F+ D+ A
Sbjct: 68 LFVGGVSWETTAETFANYFGKFG-EVVDSVIMTDRIT--GNPRGFGFVTFA---DSAVAE 121
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT--VFLDGVPPHWKENQIRDQIK 150
K L++ V+ +R V + P + D +I A KT +F+ G+PP +E+++++
Sbjct: 122 KVLEEDHVI---DDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFC 178
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 210
YGD+I + + T + + +GF+ F T ++ ++ FSDG KV
Sbjct: 179 VYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSV--------DRLFSDG--KVHELGDKQV 228
Query: 211 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFY 262
+ + + + G FR +G+S + + SG+A ++ + G G Y
Sbjct: 229 EIKRAEPKRTGRDNSFR-SYGASGKYDQEDSYSGKANEDYSMYSGYGGYGGY 279
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 175 (66.7 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 67/238 (28%), Positives = 108/238 (45%)
Query: 23 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
G P E LF+G + T +++++ + +G + + ++ D Q + SRGF FV
Sbjct: 25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-SRGFGFV 81
Query: 81 MFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGV 136
+SC VDA A R K D P+R V RE + AH VK +F+ G+
Sbjct: 82 TYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGI 133
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
+E +RD + YG + I + + + K++ + F+ F H+ + +
Sbjct: 134 KEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTI 191
Query: 197 DG-NSKVKLRARLSNPMPK--TQAVKGGMSGGF--RIGH-GSSRTFSRYGRGSGRAGH 248
+G N +VK +A M +Q +GG SG F R G+ G F R G GR G+
Sbjct: 192 NGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGNFGRGGNFGGRGGY 248
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 179 (68.1 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 68/237 (28%), Positives = 109/237 (45%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCH 85
S ++ TL + N+ + T+E ++ E E + Q++ G S+G+AF+ F+
Sbjct: 482 SGESKTLVLSNLSYSATEETLQ--------EVFEKATFIKVPQNQQGKSKGYAFIEFASF 533
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
DA A K ++ G RT+++ P P+ KT+F+ G+ E +
Sbjct: 534 EDAKEALNSCNKMEIE-G---RTIRLELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETL 588
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
++ +G +R + + T K +GF+DF++ E A A A+ + E DGN KV L
Sbjct: 589 KESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTLD 643
Query: 206 ARLSNPMPKTQ-AVKGGMSGGFRIGHGSSRTFSRYGRGS-GRAGHHFNRANFQRGRG 260
+ P + +GG GGF G G R R G G GR G R F+ GRG
Sbjct: 644 --WAKPKGEGGFGGRGGGRGGFG-GRGGGRGGGRGGFGGRGRGGFG-GRGGFRGGRG 696
Score = 139 (54.0 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 51/181 (28%), Positives = 79/181 (43%)
Query: 107 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST 166
RT+++ P P+ KT+F+ G+ E +++ +G +R + + T
Sbjct: 551 RTIRLELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRET 606
Query: 167 AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGF 226
K +GF+DF++ E A A A+ + E DGN + L PK + GG GG
Sbjct: 607 GSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-----KVTLDWAKPKGEGGFGGRGGG- 659
Query: 227 RIGHGSSRTFSRYGRGSGRAGHHFN-RANFQRGRGFYQHGRNHSSRMGPTEYDFDNRYTE 285
R G G GRG GR G R F GRG ++ GR G ++ + T+
Sbjct: 660 RGGFGGRGG----GRGGGRGGFGGRGRGGFG-GRGGFRGGRGGGG--GGGDFKPQGKKTK 712
Query: 286 F 286
F
Sbjct: 713 F 713
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 179 (68.1 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 73/256 (28%), Positives = 115/256 (44%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCH 85
S ++ TL + N+ + T+E ++ E E + Q++ G S+G+AF+ F+
Sbjct: 495 SGESKTLVLSNLAYSATEETLQ--------EVFEKATFIKVPQNQNGKSKGYAFIEFASF 546
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
DA A K ++ G R +++ P P+ KT+F+ G+ E +
Sbjct: 547 EDAKEALNSCNKREIE-G---RAIRLELQGPRGSPNARSQPS-KTLFVKGLSEETTEETL 601
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
++ G IR + + T K +GF+DF++ E A A A+ + E DGN KV L
Sbjct: 602 KESFDGS---IRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL- 655
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGS--GRAGHHFN-RANFQRGRGFY 262
PK + GG GG R G G R R GRG GR F R F+ GRG
Sbjct: 656 ---DWAKPKGEGGFGGRGGG-RGGFGG-RGGGRGGRGGFGGRGRGGFGGRGGFRGGRG-- 708
Query: 263 QHGRNHSSRMGPTEYD 278
G +H + T+++
Sbjct: 709 GGGGDHKPQGKKTKFE 724
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 174 (66.3 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 69/253 (27%), Positives = 114/253 (45%)
Query: 19 GKRC--GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
G+R G P E LF+G + T +++++ + +G + + ++ D Q + S
Sbjct: 17 GRRSSQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-S 73
Query: 75 RGFAFVMFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKT 130
RGF FV +SC VDA A R K D P+R V RE + AH VK
Sbjct: 74 RGFGFVTYSCVEEVDA-AMSARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKK 125
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ +E +R+ + YG + I + + + K++ + F+ F H+ + +
Sbjct: 126 IFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--V 183
Query: 191 NNKEFSDG-NSKVKLRARLSNPMP--KTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 247
+G N +VK +A M +Q +GG SG F +G G+ F G GR G
Sbjct: 184 QKYHTINGHNCEVK-KALSKQEMQTASSQRGRGGGSGNF-MGRGN---FGGGGGNFGRGG 238
Query: 248 HHFNRANFQRGRG 260
+ R + G G
Sbjct: 239 NFGGRGGYGGGGG 251
Score = 147 (56.8 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 58/198 (29%), Positives = 88/198 (44%)
Query: 74 SRGFAFVMFSCHVDAMAAYK-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKT 130
SRGF FV +SC + AA R K D P+R V RE + AH VK
Sbjct: 73 SRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKK 125
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ +E +R+ + YG + I + + + K++ + F+ F H+ + +
Sbjct: 126 IFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--V 183
Query: 191 NNKEFSDG-NSKVKLRARLSNPMP--KTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 247
+G N +VK +A M +Q +GG SG F +G G+ +G G G G
Sbjct: 184 QKYHTINGHNCEVK-KALSKQEMQTASSQRGRGGGSGNF-MGRGN------FGGGGGNFG 235
Query: 248 HHFNRANFQRGRGFYQHG 265
NF GRG Y G
Sbjct: 236 RG---GNFG-GRGGYGGG 249
>MGI|MGI:2384294 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2384294 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 HSSP:Q9NQ94 CTD:54502
OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:AK035620 EMBL:AK085733
EMBL:AK142584 EMBL:AK170082 EMBL:BC013481 EMBL:BC034195
EMBL:BC112902 IPI:IPI00128377 IPI:IPI00265759 RefSeq:NP_001120854.1
RefSeq:NP_620704.1 RefSeq:NP_848541.2 UniGene:Mm.36863
UniGene:Mm.400185 UniGene:Mm.426431 ProteinModelPortal:Q91WT8
SMR:Q91WT8 PhosphoSite:Q91WT8 PaxDb:Q91WT8 PRIDE:Q91WT8
Ensembl:ENSMUST00000094756 Ensembl:ENSMUST00000094757
Ensembl:ENSMUST00000113724 Ensembl:ENSMUST00000113726
Ensembl:ENSMUST00000167950 GeneID:245945 KEGG:mmu:245945
UCSC:uc008xok.2 UCSC:uc008xop.2 InParanoid:Q91WT8 NextBio:387022
Bgee:Q91WT8 CleanEx:MM_RBM47 Genevestigator:Q91WT8 Uniprot:Q91WT8
Length = 590
Score = 172 (65.6 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 62/226 (27%), Positives = 103/226 (45%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I + I +++ EGV N+ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMQTVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ------AVKGGMSGGFRIGHGSSRTFS 237
G+ L L+ P+ K Q A KGG + S +S
Sbjct: 308 GSC---LEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYS 350
Score = 48 (22.0 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 234 RTFSRYGRGSGRAGHHFNRANFQRGR--GFYQHGRNHSSR 271
+T S GRG G AG NR RG G Y GR SR
Sbjct: 376 KTGSIRGRGRGAAG---NRTPGPRGSYLGGYSAGRGIYSR 412
>UNIPROTKB|F1Q212 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:AAEX03002529 EMBL:AAEX03002530
Ensembl:ENSCAFT00000025193 Uniprot:F1Q212
Length = 592
Score = 177 (67.4 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 60/210 (28%), Positives = 102/210 (48%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 141 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 199
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 200 FVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMETVKILYVRNLM 256
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N++N E +
Sbjct: 257 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVLAMNSLNGTEL-E 309
Query: 198 GNSKVKLRARLSNPMPKTQ------AVKGG 221
G+ L L+ P+ K Q A KGG
Sbjct: 310 GSC---LEVTLAKPVDKEQYSRYQKAAKGG 336
>UNIPROTKB|Q9XSR3 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 HSSP:Q9NQ94 EMBL:AJ388555 RefSeq:NP_001002955.1
UniGene:Cfa.124 ProteinModelPortal:Q9XSR3 SMR:Q9XSR3 GeneID:403423
KEGG:cfa:403423 CTD:54502 InParanoid:Q9XSR3 OrthoDB:EOG4THVTH
NextBio:20816943 Uniprot:Q9XSR3
Length = 592
Score = 177 (67.4 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 60/210 (28%), Positives = 102/210 (48%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 141 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 199
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 200 FVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMETVKILYVRNLM 256
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N++N E +
Sbjct: 257 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVLAMNSLNGTEL-E 309
Query: 198 GNSKVKLRARLSNPMPKTQ------AVKGG 221
G+ L L+ P+ K Q A KGG
Sbjct: 310 GSC---LEVTLAKPVDKEQYSRYQKAAKGG 336
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 178 (67.7 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 70/238 (29%), Positives = 108/238 (45%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCH 85
S ++ TL + N+ + T+E ++ E E + Q+ G S+G+AF+ F+
Sbjct: 485 SGESKTLVLSNLSYSATEETLQ--------EVFEKATFIKVPQNPHGKSKGYAFIEFASF 536
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
DA A K ++ G RT+++ P P+ KT+F+ G+ E +
Sbjct: 537 EDAKEALNSCNKMEIE-G---RTIRLELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETL 591
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
++ +G +R + + T K +GF+DF++ E A A A+ + E DGN KV L
Sbjct: 592 KESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL- 645
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGS--GRAGHHFN-RANFQRGRG 260
PK + GG GG R G G R R GRG GR F R F+ GRG
Sbjct: 646 ---DWAKPKGEGGFGGRGGG-RGGFGG-RGGGRGGRGGFGGRGRGGFGGRGGFRGGRG 698
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 178 (67.7 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 70/238 (29%), Positives = 108/238 (45%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCH 85
S ++ TL + N+ + T+E ++ E E + Q+ G S+G+AF+ F+
Sbjct: 486 SGESKTLVLSNLSYSATEETLQ--------EVFEKATFIKVPQNPHGKSKGYAFIEFASF 537
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
DA A K ++ G RT+++ P P+ KT+F+ G+ E +
Sbjct: 538 EDAKEALNSCNKMEIE-G---RTIRLELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETL 592
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
++ +G +R + + T K +GF+DF++ E A A A+ + E DGN KV L
Sbjct: 593 KESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL- 646
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGS--GRAGHHFN-RANFQRGRG 260
PK + GG GG R G G R R GRG GR F R F+ GRG
Sbjct: 647 ---DWAKPKGEGGFGGRGGG-RGGFGG-RGGGRGGRGGFGGRGRGGFGGRGGFRGGRG 699
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 178 (67.7 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 72/255 (28%), Positives = 115/255 (45%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
S ++ TL + N+ + T+E +++ E +I + + G S+G+AF+ F+
Sbjct: 492 SGESKTLVLSNLSYSATEETLQEVF-----EKATHIKVPQN--QNGKSKGYAFIEFASFE 544
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
DA A K ++ G R +++ P P+ KT+F+ G+ E ++
Sbjct: 545 DAKEALNSCNKREIE-G---RAIRLELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETLK 599
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206
+ G IR + + T K +GF+DF++ E A A A+ + E DGN KV L
Sbjct: 600 ESFDGS---IRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL-- 652
Query: 207 RLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGS--GRAGHHFN-RANFQRGRGFYQ 263
PK + GG GG R G G R R GRG GR F R F+ GRG
Sbjct: 653 --DWAKPKGEGGFGGRGGG-RGGFGG-RGGGRGGRGGFGGRGRGGFGGRGGFRGGRG--- 705
Query: 264 HGRNHSSRMGPTEYD 278
G +H + T+++
Sbjct: 706 GGGDHKPQGKKTKFE 720
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 171 (65.3 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 66/261 (25%), Positives = 116/261 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 204
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 205 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ---RGRGF 261
+ S+ ++ + G GG G G + F R G SGR G +R G G+
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY 244
Query: 262 YQHGRNHSSRMGPTEY-DFDN 281
G + ++ G Y DF N
Sbjct: 245 NGFGNDGNNFGGGGSYNDFGN 265
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 171 (65.3 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 67/261 (25%), Positives = 115/261 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEKVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 204
YG + I + + + K++ + F+ F H + + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 205 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ---RGRGF 261
+ S+ ++ + G GG G G + F R G SGR G +R G G+
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY 244
Query: 262 YQHGRNHSSRMGPTEY-DFDN 281
G + S+ G Y DF N
Sbjct: 245 NGFGNDGSNFGGGGSYNDFGN 265
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 171 (65.3 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 63/259 (24%), Positives = 111/259 (42%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAINNKEFSDGNSKVKLRA 206
YG + I + + + K++ + F+ F H++ + + +N + K
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQEM 186
Query: 207 RLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ---RGRGFYQ 263
++ + ++ G GG G G + F R G SGR G +R G G+
Sbjct: 187 ASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNG 246
Query: 264 HGRNHSSRMGPTEY-DFDN 281
G + S+ G Y DF N
Sbjct: 247 FGNDGSNFGGGGSYNDFGN 265
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 172 (65.6 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 68/251 (27%), Positives = 110/251 (43%)
Query: 23 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD--IQHEGL---SR 75
G P E LF+G + T +++++ + + +G E ++D + + SR
Sbjct: 3 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEGWR-DGSEKWGTLTDCVVMRDPQTKRSR 61
Query: 76 GFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVF 132
GF FV +SC VDA A R K D P+R V RE + AH VK +F
Sbjct: 62 GFGFVTYSCEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIF 113
Query: 133 LDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 192
+ G+ E +RD + YG + I + + + K++ + F+ F H+ + +
Sbjct: 114 VGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQK 171
Query: 193 KEFSDG-NSKVKLRARLSNPMPKTQAVKG--GMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+G N +VK +A M + +G G SG F +GHG + F G GR G+
Sbjct: 172 YHTINGHNCEVK-KALSKQEMQSAGSQRGCGGGSGNF-MGHGGN--FGGGGGNFGRGGNF 227
Query: 250 FNRANFQRGRG 260
R + G G
Sbjct: 228 GGRGGYGGGGG 238
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 171 (65.3 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 58/232 (25%), Positives = 103/232 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASKR-SRGFGFVTFSSMAEVDAAM 79
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+P + G + E +P + VK +F+ G+ +E+ +RD + Y
Sbjct: 80 AA--RPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP- 211
G V I + + + K++ +GF F H+ + + +G++ ++R LS
Sbjct: 136 GKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQE 192
Query: 212 MPKTQAVKGGMSGGFRIG--HGSSRTFSRYGRGSGRAGHHFNRANFQRGRGF 261
M + Q+ + G G F G HG F G GS G + + GRGF
Sbjct: 193 MQEVQSSRSGRGGNFGFGDSHGGGGNFGP-GPGSNFRGGSYG---YGSGRGF 240
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 171 (65.3 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 57/230 (24%), Positives = 104/230 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASKR-SRGFGFVTFSSMAEVDAAM 79
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+P + G + E +P + VK +F+ G+ +E+ +RD + Y
Sbjct: 80 AA--RPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPM 212
G + I + + + K++ +GF+ F H+ V I + + N++V+ +A M
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTFDDHDP-VDKIVLQKHHTINGHNAEVR-KALSRQEM 193
Query: 213 PKTQAVKGGMSGGFRIGHGSSRTFS-RYGRGSGRAGHHFNRANFQRGRGF 261
+ Q+ + G G F G G SR +G G G + + GRGF
Sbjct: 194 QEVQSSRSGRGGNF--GFGDSRGGGGNFGPGPG-SNFRGGSDGYGSGRGF 240
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 176 (67.0 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 72/256 (28%), Positives = 115/256 (44%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCH 85
S ++ TL + N+ + T+E ++ E E + Q++ G S+G+AF+ F+
Sbjct: 482 SGESKTLVLSNLSYSATEETLQ--------EVFEKATFIKVPQNQNGKSKGYAFIEFASF 533
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
DA A K ++ G R +++ P P+ KT+F+ G+ E +
Sbjct: 534 EDAKEALNSCNKREIE-G---RAIRLELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETL 588
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
++ G +R + + T K +GF+DF++ E A A A+ + E DGN KV L
Sbjct: 589 KESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL- 642
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGS--GRAGHHFN-RANFQRGRGFY 262
PK + GG GG R G G R R GRG GR F R F+ GRG
Sbjct: 643 ---DWAKPKGEGGFGGRGGG-RGGFGG-RGGGRGGRGGFGGRGRGGFGGRGGFRGGRG-- 695
Query: 263 QHGRNHSSRMGPTEYD 278
G +H + T+++
Sbjct: 696 -GGGDHKPQGKKTKFE 710
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 176 (67.0 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 72/256 (28%), Positives = 115/256 (44%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCH 85
S ++ TL + N+ + T+E ++ E E + Q++ G S+G+AF+ F+
Sbjct: 483 SGESKTLVLSNLSYSATEETLQ--------EVFEKATFIKVPQNQNGKSKGYAFIEFASF 534
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
DA A K ++ G R +++ P P+ KT+F+ G+ E +
Sbjct: 535 EDAKEALNSCNKREIE-G---RAIRLELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETL 589
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
++ G +R + + T K +GF+DF++ E A A A+ + E DGN KV L
Sbjct: 590 KESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL- 643
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGS--GRAGHHFN-RANFQRGRGFY 262
PK + GG GG R G G R R GRG GR F R F+ GRG
Sbjct: 644 ---DWAKPKGEGGFGGRGGG-RGGFGG-RGGGRGGRGGFGGRGRGGFGGRGGFRGGRG-- 696
Query: 263 QHGRNHSSRMGPTEYD 278
G +H + T+++
Sbjct: 697 -GGGDHKPQGKKTKFE 711
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 176 (67.0 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 72/256 (28%), Positives = 115/256 (44%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCH 85
S ++ TL + N+ + T+E ++ E E + Q++ G S+G+AF+ F+
Sbjct: 484 SGESKTLVLSNLSYSATEETLQ--------EVFEKATFIKVPQNQNGKSKGYAFIEFASF 535
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
DA A K ++ G R +++ P P+ KT+F+ G+ E +
Sbjct: 536 EDAKEALNSCNKREIE-G---RAIRLELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETL 590
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
++ G +R + + T K +GF+DF++ E A A A+ + E DGN KV L
Sbjct: 591 KESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL- 644
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGS--GRAGHHFN-RANFQRGRGFY 262
PK + GG GG R G G R R GRG GR F R F+ GRG
Sbjct: 645 ---DWAKPKGEGGFGGRGGG-RGGFGG-RGGGRGGRGGFGGRGRGGFGGRGGFRGGRG-- 697
Query: 263 QHGRNHSSRMGPTEYD 278
G +H + T+++
Sbjct: 698 -GGGDHKPQGKKTKFE 712
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 164 (62.8 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 57/223 (25%), Positives = 102/223 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 204
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 205 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 247
+ S+ ++ + G GG G G + F R G SGR G
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGG 227
Score = 113 (44.8 bits), Expect = 0.00064, P = 0.00064
Identities = 43/159 (27%), Positives = 69/159 (43%)
Query: 118 REPDPEIMAH--VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 175
RE AH VK +F+ G+ +E+ +RD + YG + I + + + K++ + F+
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
Query: 176 DFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP-MPKTQAVKGGMSGGFRIGHGSSR 234
F H++ + I +G++ ++R LS M + + G SG G G
Sbjct: 152 TFDDHDSVDKIV--IQKYHTVNGHN-CEVRKALSKQEMASASSSQRGRSGSGNFG-G--- 204
Query: 235 TFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMG 273
GRG G G+ NF RG F G SR G
Sbjct: 205 -----GRGGGFGGND----NFGRGGNFSGRGGFGGSRGG 234
Score = 37 (18.1 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 229 GHGSSRTFSRYGRG 242
G+G S + S YG G
Sbjct: 252 GYGGSSSSSSYGSG 265
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 175 (66.7 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 69/237 (29%), Positives = 107/237 (45%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
S ++ TL + N+ + T+E +++ E +I + + G S+G+AF+ F+
Sbjct: 397 SGESKTLVLSNLSYSATEETLQEVF-----EKATHIKVPQN--QNGKSKGYAFIEFASFE 449
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
DA A K ++ G R +++ P P+ KT+F+ G+ E ++
Sbjct: 450 DAKEALNSCNKREIE-G---RAIRLELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETLK 504
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206
+ G IR + + T K +GF+DF++ E A A A+ + E DGN KV L
Sbjct: 505 ESFDGS---IRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL-- 557
Query: 207 RLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGS--GRAGHHFN-RANFQRGRG 260
PK + GG GG R G G R R GRG GR F R F+ GRG
Sbjct: 558 --DWAKPKGEGGFGGRGGG-RGGFGG-RGGGRGGRGGFGGRGRGGFGGRGGFRGGRG 610
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 175 (66.7 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 69/237 (29%), Positives = 107/237 (45%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
S ++ TL + N+ + T+E +++ E +I + + G S+G+AF+ F+
Sbjct: 402 SGESKTLVLSNLSYSATEETLQEVF-----EKATHIKVPQN--QNGKSKGYAFIEFASFE 454
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
DA A K ++ G R +++ P P+ KT+F+ G+ E ++
Sbjct: 455 DAKEALNSCNKREIE-G---RAIRLELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETLK 509
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206
+ G IR + + T K +GF+DF++ E A A A+ + E DGN KV L
Sbjct: 510 ESFDGS---IRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL-- 562
Query: 207 RLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGS--GRAGHHFN-RANFQRGRG 260
PK + GG GG R G G R R GRG GR F R F+ GRG
Sbjct: 563 --DWAKPKGEGGFGGRGGG-RGGFGG-RGGGRGGRGGFGGRGRGGFGGRGGFRGGRG 615
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 175 (66.7 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 69/237 (29%), Positives = 107/237 (45%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
S ++ TL + N+ + T+E +++ E +I + + G S+G+AF+ F+
Sbjct: 402 SGESKTLVLSNLSYSATEETLQEVF-----EKATHIKVPQN--QNGKSKGYAFIEFASFE 454
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
DA A K ++ G R +++ P P+ KT+F+ G+ E ++
Sbjct: 455 DAKEALNSCNKREIE-G---RAIRLELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETLK 509
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206
+ G IR + + T K +GF+DF++ E A A A+ + E DGN KV L
Sbjct: 510 ESFDGS---IRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL-- 562
Query: 207 RLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGS--GRAGHHFN-RANFQRGRG 260
PK + GG GG R G G R R GRG GR F R F+ GRG
Sbjct: 563 --DWAKPKGEGGFGGRGGG-RGGFGG-RGGGRGGRGGFGGRGRGGFGGRGGFRGGRG 615
>UNIPROTKB|D6R9D6 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965625
ProteinModelPortal:D6R9D6 SMR:D6R9D6 Ensembl:ENST00000510871
ArrayExpress:D6R9D6 Bgee:D6R9D6 Uniprot:D6R9D6
Length = 393
Score = 171 (65.3 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 56/199 (28%), Positives = 97/199 (48%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 170 (64.9 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 69/252 (27%), Positives = 113/252 (44%)
Query: 23 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
G P E LF+G + T +++++ + +G + + ++ D Q + SRGF FV
Sbjct: 3 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-SRGFGFV 59
Query: 81 MFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGV 136
+SC VDA A R K D P+R V RE + AH VK +F+ G+
Sbjct: 60 TYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGI 111
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
+E +RD + YG + I + + + K++ + F+ F H+ + +
Sbjct: 112 KEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTI 169
Query: 197 DG-NSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA 253
+G N +VK +A M +Q +GG SG F +G G + +G G G +F R
Sbjct: 170 NGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNF-MGRGGN-----FGGGGG----NFXRG 218
Query: 254 NFQRGRGFYQHG 265
G+G Y G
Sbjct: 219 GNFGGKGXYGGG 230
>ZFIN|ZDB-GENE-061013-298 [details] [associations]
symbol:rbm46 "RNA binding motif protein 46"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-061013-298
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:BC124720 IPI:IPI00610686 RefSeq:NP_001073493.2
UniGene:Dr.132665 ProteinModelPortal:Q08BH5 SMR:Q08BH5
GeneID:566042 KEGG:dre:566042 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW NextBio:20887996 ArrayExpress:Q08BH5
Uniprot:Q08BH5
Length = 510
Score = 173 (66.0 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 59/199 (29%), Positives = 92/199 (46%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G+I KE I++++ EGV ++ + +RGFA
Sbjct: 113 GKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKV-TEGVMDVIVYPSAVDRMKNRGFA 171
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +AEP +E D E M V+ +++ +
Sbjct: 172 FVEYESHKAAAMARRKLIPGTFQLWGH---TIQVDWAEPEKELDEETMQRVRVLYVRNLM 228
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E +R + G V R+ K DY FI F E A+ + ++N K
Sbjct: 229 LSTTEETLRSEFSQLKPGSVERV--------KKLTDYAFIHFYNREDALTALESMNGKVI 280
Query: 196 SDGNSKVKLRARLSNPMPK 214
DG+ + L+ P K
Sbjct: 281 -DGSP---IEVTLAKPASK 295
>RGD|1359713 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359713 GO:GO:0005634
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 GO:GO:0003723
HSSP:Q9NQ94 CTD:54502 OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:BC081995
IPI:IPI00196127 RefSeq:NP_001005882.1 UniGene:Rn.38803
ProteinModelPortal:Q66H68 SMR:Q66H68 PRIDE:Q66H68
Ensembl:ENSRNOT00000003327 GeneID:305340 KEGG:rno:305340
UCSC:RGD:1359713 InParanoid:Q66H68 NextBio:654387
Genevestigator:Q66H68 Uniprot:Q66H68
Length = 590
Score = 169 (64.5 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 61/226 (26%), Positives = 103/226 (45%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I + I +++ EGV N+ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMQTVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I+ + +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEETIK---RSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ------AVKGGMSGGFRIGHGSSRTFS 237
G+ L L+ P+ K Q A KGG + S +S
Sbjct: 308 GSC---LEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYS 350
Score = 48 (22.0 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 234 RTFSRYGRGSGRAGHHFNRANFQRGR--GFYQHGRNHSSR 271
+T S GRG G AG NR RG G Y GR SR
Sbjct: 376 KTGSIRGRGRGAAG---NRTPGPRGSYLGGYSAGRGIYSR 412
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 173 (66.0 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 69/238 (28%), Positives = 107/238 (44%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCH 85
S ++ TL + N+ + T+E ++ E E + Q+ G S+G+AF+ F+
Sbjct: 339 SGESKTLVLSNLSYSATEETLQ--------EVFEKATFIKVPQNPHGKSKGYAFIEFASF 390
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
DA A K ++ G RT+++ P P+ KT+F+ G+ E +
Sbjct: 391 EDAKEALNSCNKMEIE-G---RTIRLELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETL 445
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
++ +G +R + + T K +GF+DF++ E A A+ + E DGN KV L
Sbjct: 446 KESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKTAKEAMEDGEI-DGN-KVTL- 499
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGS--GRAGHHFN-RANFQRGRG 260
PK + GG GG R G G R R GRG GR F R F+ GRG
Sbjct: 500 ---DWAKPKGKGGFGGRGGG-RGGFGG-RGGGRGGRGGFGGRGRGGFGGRGGFRGGRG 552
>UNIPROTKB|F6RYN2 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:DAAA02017489 IPI:IPI00690190
RefSeq:NP_001192963.1 UniGene:Bt.22438 Ensembl:ENSBTAT00000003040
GeneID:540831 KEGG:bta:540831 NextBio:20878859 Uniprot:F6RYN2
Length = 591
Score = 173 (66.0 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 60/210 (28%), Positives = 101/210 (48%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ------AVKGG 221
G+ L L+ P+ K Q A KGG
Sbjct: 308 GSC---LEVTLAKPVDKEQYSRYQKAAKGG 334
>UNIPROTKB|F1S4H0 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:CU929922 RefSeq:XP_003128987.3
Ensembl:ENSSSCT00000009623 GeneID:100513606 KEGG:ssc:100513606
Uniprot:F1S4H0
Length = 591
Score = 173 (66.0 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 60/210 (28%), Positives = 101/210 (48%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ------AVKGG 221
G+ L L+ P+ K Q A KGG
Sbjct: 308 GSC---LEVTLAKPVDKEQYSRYQKAAKGG 334
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 158 (60.7 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 60/222 (27%), Positives = 102/222 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
L +G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 10 LLIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-SRGFGFVTYSCVEEVDA-A 65
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 66 VCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 118
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG-NSKVKLRAR 207
+ YG + I + + + K++ + F+ F H+ ++ +G N +VK +A
Sbjct: 119 FEKYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKIVD--QKYHIINGHNCEVK-KAL 175
Query: 208 LSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 247
M +Q +GG SG F +G G + +G G G G
Sbjct: 176 SKQEMQSAGSQRGRGGGSGNF-MGRGGN-----FGGGGGNFG 211
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 168 (64.2 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 56/231 (24%), Positives = 104/231 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASKR-SRGFGFVTFSSMAEVDAAM 67
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+P + G + E +P + VK +F+ G+ +E+ +RD + Y
Sbjct: 68 AA--RPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEY 123
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP- 211
G + I + + + K++ +GF+ F H+ + + +G++ ++R LS
Sbjct: 124 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQE 180
Query: 212 MPKTQAVKGGMSGGFRIGHGSSRTFS-RYGRGSGRAGHHFNRANFQRGRGF 261
M + Q+ + G G F G G SR +G G G + + GRGF
Sbjct: 181 MQEVQSSRSGRGGNF--GFGDSRGGGGNFGPGPG-SNFRGGSDGYGSGRGF 228
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 168 (64.2 bits), Expect = 7.0e-10, P = 7.0e-10
Identities = 61/245 (24%), Positives = 110/245 (44%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS--C 84
+E LF+G +C+ T+++++ + +G + + ++ D ++ SRGF FV FS
Sbjct: 17 NEQFHKLFIGGLCSRTTEKSLRNYYQQWGK--LTDCVVLRDPSNKR-SRGFGFVTFSSVA 73
Query: 85 HVDA-MAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
VDA MAA VV P+R V E +P + VK +F+ G+ +E+
Sbjct: 74 EVDAAMAARPHSVDGKVV--DPKRAVA---REESEKPGAHLA--VKKLFVGGIKEDTEEH 126
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203
+RD + YG + I + + + K++ +GF+ F H+ + + +G+
Sbjct: 127 HLRDYFEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHHAEV 184
Query: 204 LRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGR---AGHHFNRANFQRGRG 260
+A M + Q+ G G +G S +G G GR G++ G G
Sbjct: 185 GKALSRQEMQEVQSSTSGRGGHIGLGD-SCGGGGNFGAGPGRKYKGGYNGYGRGPGLGDG 243
Query: 261 FYQHG 265
+Y +G
Sbjct: 244 YYGYG 248
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 166 (63.5 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 65/256 (25%), Positives = 115/256 (44%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
+D+ +F+G + +K+ + + L +G V + + +D G SRGF FV+F D
Sbjct: 27 QDDGKMFIGGLSWDTSKKDLTEYLSRFGE--VVDCTIKTD-PVTGRSRGFGFVLFK---D 80
Query: 88 AMAAYKRLQ-KPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
A + K L+ K + G + + A+ L+ +P K VF+ G+ P E QI+
Sbjct: 81 AASVEKVLELKEHKLDG---KLIDPKRAKALKGKEPP-----KKVFVGGLSPDTSEEQIK 132
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206
+ +G++ I L + T +R+ + FI ++ E + + + G ++K+
Sbjct: 133 EYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES-RYHQIGSGKCEIKVAQ 191
Query: 207 RLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA--N-FQRGRGFYQ 263
+ Q KGG S G G R GRG G+ G ++N+ N + +G G Y
Sbjct: 192 PKEVYRQQQQQQKGGKSNASG-GRGGGR-----GRGRGQ-GQNWNQGFNNYYDQGYGNYN 244
Query: 264 HGRNHSSRMGPTEYDF 279
+ S G YD+
Sbjct: 245 SAYSDQSYSGYGGYDY 260
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 168 (64.2 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 56/231 (24%), Positives = 104/231 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 22 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASKR-SRGFGFVTFSSMAEVDAAM 78
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+P + G + E +P + VK +F+ G+ +E+ +RD + Y
Sbjct: 79 AA--RPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEY 134
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP- 211
G + I + + + K++ +GF+ F H+ + + +G++ ++R LS
Sbjct: 135 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQE 191
Query: 212 MPKTQAVKGGMSGGFRIGHGSSRTFS-RYGRGSGRAGHHFNRANFQRGRGF 261
M + Q+ + G G F G G SR +G G G + + GRGF
Sbjct: 192 MQEVQSSRSGRGGNF--GFGDSRGGGGNFGPGPG-SNFRGGSDGYGSGRGF 239
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 167 (63.8 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 69/253 (27%), Positives = 116/253 (45%)
Query: 24 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVE-G-VENINLVSDIQHEGLSRGFAFVM 81
++P + +FVG + +W + K+ LKDY + G V + + D + G SRGF F++
Sbjct: 57 SSPLTEGVKMFVGGL--SW--DTSKKDLKDYFAKFGEVSDCTIKMD-PNTGRSRGFGFIL 111
Query: 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR----EPDPEIMAHVKTVFLDGVP 137
F DA + D V H E + +P + + DP +K +F+ G+
Sbjct: 112 FK---DA-------ESVDKVLEHKEHRLDGRLIDPKKAMAMKKDP-----IKKIFVGGLN 156
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
P E+QIR+ + +G++ I L + T KR+ + FI F + + I K+F +
Sbjct: 157 PEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDP----VKKILEKKFHN 212
Query: 198 GNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGR---AGHHF-NRA 253
+ K +++ P Q GG G F G G R G+G G+ G+++ N+
Sbjct: 213 VSGS-KCEIKIAQPKEVYQQQYGGRGGSFG-GRGG-----RGGKGQGQNWNQGYNYWNQG 265
Query: 254 NFQRGRGFY-QHG 265
+G G Y Q G
Sbjct: 266 YGNQGYGGYGQQG 278
Score = 123 (48.4 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 45/190 (23%), Positives = 80/190 (42%)
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
+K + D V H E + +P + + +K +F+ G+ P E+QIR+ +
Sbjct: 112 FKDAESVDKVLEHKEHRLDGRLIDPKKAMAMK-KDPIKKIFVGGLNPEAGEDQIREYFET 170
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 211
+G++ I L + T KR+ + FI F + + I K+F + + K +++ P
Sbjct: 171 FGEIEAIELPMDPKTNKRRGFVFITFKEEDP----VKKILEKKFHNVSGS-KCEIKIAQP 225
Query: 212 MPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSR 271
Q GG G F G G GRG G ++N+ +G+ G +
Sbjct: 226 KEVYQQQYGGRGGSFG-GRG--------GRGGKGQGQNWNQGYNYWNQGYGNQGYGGYGQ 276
Query: 272 MGPTEY-DFD 280
G Y ++D
Sbjct: 277 QGYGGYGNYD 286
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 168 (64.2 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 56/231 (24%), Positives = 104/231 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASKR-SRGFGFVTFSSMAEVDAAM 79
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+P + G + E +P + VK +F+ G+ +E+ +RD + Y
Sbjct: 80 AA--RPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP- 211
G + I + + + K++ +GF+ F H+ + + +G++ ++R LS
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQE 192
Query: 212 MPKTQAVKGGMSGGFRIGHGSSRTFS-RYGRGSGRAGHHFNRANFQRGRGF 261
M + Q+ + G G F G G SR +G G G + + GRGF
Sbjct: 193 MQEVQSSRSGRGGNF--GFGDSRGGGGNFGPGPG-SNFRGGSDGYGSGRGF 240
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 168 (64.2 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 56/231 (24%), Positives = 104/231 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASKR-SRGFGFVTFSSMAEVDAAM 79
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+P + G + E +P + VK +F+ G+ +E+ +RD + Y
Sbjct: 80 AA--RPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP- 211
G + I + + + K++ +GF+ F H+ + + +G++ ++R LS
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQE 192
Query: 212 MPKTQAVKGGMSGGFRIGHGSSRTFS-RYGRGSGRAGHHFNRANFQRGRGF 261
M + Q+ + G G F G G SR +G G G + + GRGF
Sbjct: 193 MQEVQSSRSGRGGNF--GFGDSRGGGGNFGPGPG-SNFRGGSDGYGSGRGF 240
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 168 (64.2 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 56/231 (24%), Positives = 104/231 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASKR-SRGFGFVTFSSMAEVDAAM 79
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+P + G + E +P + VK +F+ G+ +E+ +RD + Y
Sbjct: 80 AA--RPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP- 211
G + I + + + K++ +GF+ F H+ + + +G++ ++R LS
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQE 192
Query: 212 MPKTQAVKGGMSGGFRIGHGSSRTFS-RYGRGSGRAGHHFNRANFQRGRGF 261
M + Q+ + G G F G G SR +G G G + + GRGF
Sbjct: 193 MQEVQSSRSGRGGNF--GFGDSRGGGGNFGPGPG-SNFRGGSDGYGSGRGF 240
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 168 (64.2 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 57/230 (24%), Positives = 103/230 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASKR-SRGFGFVTFSSMAEVDAAM 79
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+P + G + E +P + VK +F+ G+ +E+ +RD + Y
Sbjct: 80 AA--RPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPM 212
G + I + + + K++ +GF+ F H+ V I + N++V+ +A M
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTFDDHDP-VDKIFLQKYHTINGHNAEVR-KALSRQEM 193
Query: 213 PKTQAVKGGMSGGFRIGHGSSRTFS-RYGRGSGRAGHHFNRANFQRGRGF 261
+ Q+ + G G F G G SR +G G G + + GRGF
Sbjct: 194 QEVQSSRSGRGGNF--GFGDSRGGGGNFGPGPG-SNFRGGSDGYGSGRGF 240
>UNIPROTKB|E1BVJ9 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:AADN02031225 IPI:IPI00588745
RefSeq:XP_003641292.1 UniGene:Gga.25965 ProteinModelPortal:E1BVJ9
Ensembl:ENSGALT00000023079 GeneID:770355 KEGG:gga:770355
Uniprot:E1BVJ9
Length = 597
Score = 172 (65.6 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 60/210 (28%), Positives = 101/210 (48%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F+T E A+ +N +N E +
Sbjct: 255 IETTEDTIK---KVFGQFNPGCVER---VKKIRDYAFVHFTTREDAIHAMNNLNGVEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ------AVKGG 221
G+ L L+ P+ K Q A KGG
Sbjct: 308 GSC---LEVTLAKPVDKEQYTRYQKAAKGG 334
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 173 (66.0 bits), Expect = 7.8e-10, P = 7.8e-10
Identities = 71/256 (27%), Positives = 115/256 (44%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCH 85
S ++ TL + N+ + T+E ++ E E + Q++ G S+G+AF+ F+
Sbjct: 487 SGESKTLVLSNLSYSATEETLQ--------EVFEKATFIKVPQNQNGKSKGYAFIEFASF 538
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
DA A K ++ G R +++ P P+ KT+F+ G+ E +
Sbjct: 539 EDAKEALNSCNKREIE-G---RAIRLELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETL 593
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
++ G +R + + T K +GF+DF++ E A A A+ + E DGN KV L
Sbjct: 594 KESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL- 647
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGS--GRAGHHFN-RANFQRGRGFY 262
PK + GG GG R G G R R G+G GR F R F+ GRG
Sbjct: 648 ---DWAKPKGEGGFGGRGGG-RGGFGG-RGGGRRGQGGFGGRGRGGFGGRGGFRGGRG-- 700
Query: 263 QHGRNHSSRMGPTEYD 278
G +H + T+++
Sbjct: 701 -GGGDHKPQGKKTKFE 715
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 165 (63.1 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 67/259 (25%), Positives = 115/259 (44%)
Query: 23 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
G P E LF+G + T ++++ + +G + + ++ D Q + SRGF+FV
Sbjct: 27 GHDPKEPEQLRKLFIGGLSFETTDGSLREHFEKWGT--LTDCVVMRDPQRK-CSRGFSFV 83
Query: 81 MFSCHVDAMAAYKRLQKPDVVFG---HPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
+SC V+ + A +P V G P+R V E P +M V+ +F+ G+
Sbjct: 84 TYSC-VEEVGAVM-CARPHKVVGCVVEPKRAVS---REDSIIPGAHLM--VEKIFVGGIK 136
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
+E +RD + YG + I + + + K++ + F+ F H+ + + +
Sbjct: 137 EDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDNHDTVDKVVQKYHT--VNG 194
Query: 198 GNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQR 257
N +VK + P +Q GG SG F +G G + R G G G G +R ++
Sbjct: 195 HNCEVKEQEM---PSAGSQRGHGGGSGNF-MGRGGNFG-GRGGYGGGGGG---SRGSYGG 246
Query: 258 GRG-FYQHGRN--HSSRMG 273
G G F G + H R G
Sbjct: 247 GDGGFNGFGGDAGHGGRRG 265
>UNIPROTKB|B7Z8Z7 [details] [associations]
symbol:RBM47 "cDNA FLJ51456, moderately similar to APOBEC1
complementation factor" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 UniGene:Hs.518727 HGNC:HGNC:30358 ChiTaRS:RBM47
EMBL:AK304206 IPI:IPI00964320 SMR:B7Z8Z7 STRING:B7Z8Z7
Ensembl:ENST00000514014 Uniprot:B7Z8Z7
Length = 555
Score = 171 (65.3 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 56/199 (28%), Positives = 97/199 (48%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 101 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 159
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 160 FVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMETVKILYVRNLM 216
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 217 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 269
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 270 GSC---LEVTLAKPVDKEQ 285
>UNIPROTKB|A0AV96 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003723 CTD:54502
OrthoDB:EOG4THVTH EMBL:AF261889 EMBL:AF262323 EMBL:AK000280
EMBL:AC098869 EMBL:AC112717 EMBL:BC034402 EMBL:BC126261
IPI:IPI00005042 IPI:IPI00169342 RefSeq:NP_001092104.1
RefSeq:NP_061900.2 UniGene:Hs.518727 PDB:2DIS PDBsum:2DIS
ProteinModelPortal:A0AV96 SMR:A0AV96 IntAct:A0AV96 STRING:A0AV96
PhosphoSite:A0AV96 PaxDb:A0AV96 PRIDE:A0AV96 DNASU:54502
Ensembl:ENST00000295971 Ensembl:ENST00000319592
Ensembl:ENST00000381793 Ensembl:ENST00000381795 GeneID:54502
KEGG:hsa:54502 UCSC:uc003gvc.2 UCSC:uc003gvd.2
GeneCards:GC04M040425 HGNC:HGNC:30358 HPA:HPA006347
neXtProt:NX_A0AV96 PharmGKB:PA162400825 InParanoid:A0AV96
OMA:IGPNREY ChiTaRS:RBM47 EvolutionaryTrace:A0AV96 GenomeRNAi:54502
NextBio:56852 ArrayExpress:A0AV96 Bgee:A0AV96 CleanEx:HS_RBM47
Genevestigator:A0AV96 Uniprot:A0AV96
Length = 593
Score = 171 (65.3 bits), Expect = 9.7e-10, P = 9.7e-10
Identities = 56/199 (28%), Positives = 97/199 (48%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 166 (63.5 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 65/256 (25%), Positives = 115/256 (44%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
+D+ +F+G + +K+ + + L +G V + + +D G SRGF FV+F D
Sbjct: 63 QDDGKMFIGGLSWDTSKKDLTEYLSRFGE--VVDCTIKTD-PVTGRSRGFGFVLFK---D 116
Query: 88 AMAAYKRLQ-KPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
A + K L+ K + G + + A+ L+ +P K VF+ G+ P E QI+
Sbjct: 117 AASVEKVLELKEHKLDG---KLIDPKRAKALKGKEPP-----KKVFVGGLSPDTSEEQIK 168
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206
+ +G++ I L + T +R+ + FI ++ E + + + G ++K+
Sbjct: 169 EYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES-RYHQIGSGKCEIKVAQ 227
Query: 207 RLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA--N-FQRGRGFYQ 263
+ Q KGG S G G R GRG G+ G ++N+ N + +G G Y
Sbjct: 228 PKEVYRQQQQQQKGGKSNASG-GRGGGR-----GRGRGQ-GQNWNQGFNNYYDQGYGNYN 280
Query: 264 HGRNHSSRMGPTEYDF 279
+ S G YD+
Sbjct: 281 SAYSDQSYSGYGGYDY 296
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 166 (63.5 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 56/231 (24%), Positives = 103/231 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 11 LFIGGLSFQTTEESLRNYYEQWGK--LTDCVVMRDPASKR-SRGFGFVTFSSMAEVDAAM 67
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+P + G + E +P + VK +F+ G+ +E+ +RD Y
Sbjct: 68 AA--RPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFAEY 123
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP- 211
G + I + + + K++ +GF+ F H+ + + +G++ ++R LS
Sbjct: 124 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQE 180
Query: 212 MPKTQAVKGGMSGGFRIGHGSSRTFS-RYGRGSGRAGHHFNRANFQRGRGF 261
M + Q+ + G G F G G SR +G G G + + GRGF
Sbjct: 181 MQEVQSSRSGRGGNF--GFGDSRGGGGNFGPGPG-SNFRGGSDGYGSGRGF 228
>RGD|1309982 [details] [associations]
symbol:Hnrnpc "heterogeneous nuclear ribonucleoprotein C
(C1/C2)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=ISO] [GO:0045120 "pronucleus" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309982 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:X16933 IPI:IPI00213609
PIR:S09017 UniGene:Rn.101929 ProteinModelPortal:P17132 SMR:P17132
STRING:P17132 PRIDE:P17132 UCSC:RGD:1309982 ArrayExpress:P17132
Genevestigator:P17132 GermOnline:ENSRNOG00000002292 Uniprot:P17132
Length = 158
Score = 146 (56.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 45/154 (29%), Positives = 71/154 (46%)
Query: 99 DVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRI 158
D V E + +P R + VK +F+ G+ P E +IR+ G+G+V I
Sbjct: 4 DKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 63
Query: 159 VLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSNPMPKTQ- 216
L + T KR+ + FI F E + I K++ + G SK +++ +S + Q
Sbjct: 64 ELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 119
Query: 217 --AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGH 248
+GG +G R G G + S YG+ S R GH
Sbjct: 120 QWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGH 151
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 149 (57.5 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 55/216 (25%), Positives = 96/216 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T ++++ + +G + + ++ D + SRGF FV +S VD + A
Sbjct: 35 LFIGGLSFETTDDSLRAHFEQWGT--LTDCVVMKD-PNTKRSRGFGFVTYSS-VDEVNAS 90
Query: 93 K--RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +EN +RD
Sbjct: 91 MDARPHKVDGRLVEPKRAVS-------REDSSKPFAHTTVKKIFVGGIKDDTEENHLRDY 143
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 208
+G + + + + T ++ + F+ F H++ + I +G++ ++R L
Sbjct: 144 FDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIV--IQKYHTVNGHN-CEVRKAL 200
Query: 209 SNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSG 244
S K + G GG G G F+RYG G
Sbjct: 201 S----KQEMANTGRGGGGG-GGGGGGNFNRYGNNGG 231
Score = 59 (25.8 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 221 GMSGGFRIGHGSSRTFSRYGRG-SGRAGHHFNRANFQRGRGFYQHG 265
G GG GHG YG G SG G +N N+ G G + G
Sbjct: 304 GYGGGGGGGHGYGNQGGGYGGGNSGGGGGGYN--NYNNGNGNFGGG 347
Score = 52 (23.4 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 16/57 (28%), Positives = 22/57 (38%)
Query: 220 GGMSGGFRIGHGSSRTFSRYGRGS---GRAGHHFNRANFQRGRGFYQHGRNHSSRMG 273
GG GG +G +R + G G G G + N G G Y + N + G
Sbjct: 289 GGNGGGSPGNYGGNRGYGGGGGGGHGYGNQGGGYGGGNSGGGGGGYNNYNNGNGNFG 345
Score = 47 (21.6 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 18/60 (30%), Positives = 24/60 (40%)
Query: 220 GGMSGGFRIGH-GSSRTFSRYGRGSGRAGHH-----FNRANFQRGRGFYQHGRNHSSRMG 273
GG GG R G+ G + +G G G G+ +N N G G+ G N G
Sbjct: 238 GGGGGGNRDGYFGRGGRGNNFGGGGGGGGYGGGGDCYNNNNGFGGGGYGGGGGNGGGSPG 297
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 164 (62.8 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 55/231 (23%), Positives = 103/231 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 19 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASKR-SRGFGFVTFSSMAEVDAAM 75
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+P + G + E +P + VK +F+ G+ +E+ +RD + Y
Sbjct: 76 AA--RPHTIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEY 131
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP- 211
G + I + + + K++ +GF+ F H+ + + +G++ ++R LS
Sbjct: 132 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQE 188
Query: 212 MPKTQAVKGGMSGGFRIGHGSSRTFS-RYGRGSGRAGHHFNRANFQRGRGF 261
M + Q + G G F G G +R +G G G + + GRGF
Sbjct: 189 MQEVQNSRSGRGGNF--GFGDARGGGGNFGPGPG-SNFRGGADGYGSGRGF 236
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 161 (61.7 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 64/231 (27%), Positives = 104/231 (45%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +FVG + +W + K+ LKDY + E ++ + + G SRGF F++F
Sbjct: 67 EDAGKMFVGGL--SW--DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK--- 119
Query: 87 DAMAAYKRL-QKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
DA + K L QK + G R + A +++ DP VK +F+ G+ P E +I
Sbjct: 120 DAASVEKVLDQKEHRLDG---RVIDPKKAMAMKK-DP-----VKKIFVGGLNPEATEEKI 170
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKL 204
R+ +G++ I L + KR+ + FI F E + + K+F SK ++
Sbjct: 171 REYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEP----VKKVLEKKFHTVSGSKCEI 226
Query: 205 RARLSNPMPKTQAVKGGMSG----GFRIGHGSSRTFSRYGRGSGRAGHHFN 251
+ + + Q G G G R G G + + YG+ R GH N
Sbjct: 227 KVAQPKEVYQQQQYGSGGRGNRNRGNR-GSGGGQGSTNYGKSQRRGGHQNN 276
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 167 (63.8 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 66/242 (27%), Positives = 101/242 (41%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LFVGN+ T+E + Q+ + +G E I D G SRGF +V F+ DA AY
Sbjct: 279 LFVGNLSWNVTEEWLHQEFEQFG-ELSARIMTERDT---GRSRGFGYVEFTNAADAAKAY 334
Query: 93 KRLQKPDV---------VFGHPERTVKVAFAEPL----REPDPEIMAHVKTVFLDGVPPH 139
+ +++ ++ G P + F E R + T+F+ +P
Sbjct: 335 EAMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQTSPESDTLFVGNLPFS 394
Query: 140 WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 199
E+ + + G+V+ I L +M + + K +G++ +S+ + A N + E DG
Sbjct: 395 ANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNELQGAEI-DGR 453
Query: 200 SKVKLRARLSNPMPKTQAVKGGMSG-GFRIGHGSSRTFSRYGRGS--GRAGHHFNRANFQ 256
+R S P GG G G R G G R R GRG GR G N
Sbjct: 454 P---IRLDFSTPRANNGGGGGGRGGFGGRGGRGGPRGGGRGGRGGFGGRGGGAGGAPNRA 510
Query: 257 RG 258
RG
Sbjct: 511 RG 512
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 164 (62.8 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 57/223 (25%), Positives = 102/223 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 37 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 93 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 147
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 204
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 148 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 207
Query: 205 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 247
+ S+ ++ + G GG G G + F R G SGR G
Sbjct: 208 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGG 248
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 162 (62.1 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 67/259 (25%), Positives = 114/259 (44%)
Query: 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF--S 83
P+ N +F+G + +K+ + + L +G V + + +D G SRGF FV+F +
Sbjct: 47 PTSGNK-MFIGGLSWDTSKKDLTEYLSRFGE--VVDCTIKTD-PVTGRSRGFGFVLFKDA 102
Query: 84 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
VD + K K D P+R A+ L+ +P K VF+ G+ P E
Sbjct: 103 ASVDKVLELKE-HKLDGKLIDPKR------AKALKGKEPP-----KKVFVGGLSPDTSEE 150
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203
QI++ +G++ I L + T +R+ + FI ++ E + + + G ++K
Sbjct: 151 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES-RYHQIGSGKCEIK 209
Query: 204 LRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA--N-FQRGRG 260
+ + Q KGG G G G +R GRG G+ G ++N+ N + +G G
Sbjct: 210 VAQPKEVYRQQQQQQKGGR-GAAAGGRGGAR-----GRGRGQ-GQNWNQGFNNYYDQGYG 262
Query: 261 FYQHGRNHSSRMGPTEYDF 279
Y S G YD+
Sbjct: 263 NYNSAYGDESYSGYGGYDY 281
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 162 (62.1 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 67/259 (25%), Positives = 114/259 (44%)
Query: 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF--S 83
P+ N +F+G + +K+ + + L +G V + + +D G SRGF FV+F +
Sbjct: 47 PTSGNK-MFIGGLSWDTSKKDLTEYLSRFGE--VVDCTIKTD-PVTGRSRGFGFVLFKDA 102
Query: 84 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
VD + K K D P+R A+ L+ +P K VF+ G+ P E
Sbjct: 103 ASVDKVLELKE-HKLDGKLIDPKR------AKALKGKEPP-----KKVFVGGLSPDTSEE 150
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203
QI++ +G++ I L + T +R+ + FI ++ E + + + G ++K
Sbjct: 151 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES-RYHQIGSGKCEIK 209
Query: 204 LRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA--N-FQRGRG 260
+ + Q KGG G G G +R GRG G+ G ++N+ N + +G G
Sbjct: 210 VAQPKEVYRQQQQQQKGGR-GAAAGGRGGAR-----GRGRGQ-GQNWNQGFNNYYDQGYG 262
Query: 261 FYQHGRNHSSRMGPTEYDF 279
Y S G YD+
Sbjct: 263 NYNSAYGDESYSGYGGYDY 281
>ZFIN|ZDB-GENE-030131-9612 [details] [associations]
symbol:si:ch211-241e15.2 "si:ch211-241e15.2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-9612 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 EMBL:BX901913
IPI:IPI00886586 Ensembl:ENSDART00000089070 ArrayExpress:F1Q5Y6
Bgee:F1Q5Y6 Uniprot:F1Q5Y6
Length = 601
Score = 167 (63.8 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 54/201 (26%), Positives = 98/201 (48%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I T +E I +++ EGV ++ + + + +RGFA
Sbjct: 150 GRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKV-TEGVLDVIVYASAADKMKNRGFA 208
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 209 FVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMETVKILYVRNLM 265
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E +R + G V R+ K +DY F+ F++ + AV ++ +N E
Sbjct: 266 IETSEEILRQTFGQFNPGCVERV--------KKIRDYAFVHFASRDDAVVAMDNLNGTEI 317
Query: 196 SDGNSKVKLRARLSNPMPKTQ 216
+G+ ++ L+ P+ K Q
Sbjct: 318 -EGS---RIEVTLAKPVDKEQ 334
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 159 (61.0 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 69/239 (28%), Positives = 110/239 (46%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL-VSDIQHEGLSRGFAFVMFSCHV 86
ED +FVG + +W + K+ LKDY + E ++ + + + G S+GF F++F
Sbjct: 61 EDAGKMFVGGL--SW--DTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFK--- 113
Query: 87 DAMAAYKRL-QKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
DA + K L QK + G R + A +++ DP VK +F+ G+ P E +I
Sbjct: 114 DAASVEKVLDQKEHRLDG---RVIDPKKAMAMKK-DP-----VKKIFVGGLNPEATEEKI 164
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
R+ +G++ I L + T KR+ + FI F E + + K+F + K
Sbjct: 165 REYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEP----VKKVLEKKFHTISGS-KCE 219
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQH 264
+++ P Q + G SGG R S G GSG G N QR RG +Q+
Sbjct: 220 IKVAQPKEVYQQQQYG-SGG-RGNRNRGNRGSGGGGGSGGQGST-NYGKSQR-RGGHQN 274
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 163 (62.4 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 66/270 (24%), Positives = 121/270 (44%)
Query: 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS--CHV 86
D LFVG I ++ +++ +YG V ++ D + G RGF FV+FS +
Sbjct: 4 DQGKLFVGGISWETDEDKLREHFTNYGE--VSQAIVMRD-KLTGRPRGFGFVIFSDPSVL 60
Query: 87 DAMAAYKR---LQKPDV--VFGHPERTV--KVAFAEPLREPDPEIMAHVKTVFLDGVPPH 139
D + K ++ DV E+ V + R + K +F+ G+PP
Sbjct: 61 DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120
Query: 140 WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 199
+ + R + YG V + + + +T + + +GF+ F + +A ++++ +K F D +
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDA----VDSVLHKTFHDLS 176
Query: 200 SK-VKLRARL---SNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGR-GSGRAGHHFNRAN 254
K V+++ L +NP +++ GG SGG++ G+G + + S GR S R H + N
Sbjct: 177 GKQVEVKRALPKDANPGGGGRSMGGGGSGGYQ-GYGGNES-SYDGRMDSNRFLQHQSVGN 234
Query: 255 FQRGRGFYQHGRNHSSRMGPTEYDFDNRYT 284
G +G + + Y YT
Sbjct: 235 GLPSYGSSGYGAGYGNGSNGAGYGAYGGYT 264
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 164 (62.8 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 57/223 (25%), Positives = 102/223 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 204
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 205 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 247
+ S+ ++ + G GG G G + F R G SGR G
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGG 227
Score = 37 (18.1 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 229 GHGSSRTFSRYGRG 242
G+G S + S YG G
Sbjct: 356 GYGGSSSSSSYGSG 369
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 164 (62.8 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 57/223 (25%), Positives = 102/223 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 204
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 205 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 247
+ S+ ++ + G GG G G + F R G SGR G
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGG 227
Score = 37 (18.1 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 229 GHGSSRTFSRYGRG 242
G+G S + S YG G
Sbjct: 357 GYGGSSSSSSYGSG 370
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 164 (62.8 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 57/223 (25%), Positives = 102/223 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 204
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 205 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 247
+ S+ ++ + G GG G G + F R G SGR G
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGG 227
Score = 37 (18.1 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 229 GHGSSRTFSRYGRG 242
G+G S + S YG G
Sbjct: 357 GYGGSSSSSSYGSG 370
>UNIPROTKB|F1LUE7 [details] [associations]
symbol:F1LUE7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00566822
Ensembl:ENSRNOT00000052211 ArrayExpress:F1LUE7 Uniprot:F1LUE7
Length = 256
Score = 157 (60.3 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 65/249 (26%), Positives = 109/249 (43%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G ++D ++ SRGF F+ +SC VDA A
Sbjct: 4 LFIGGLSFETTDDSLREHFEKWGT--------LTDCGNKR-SRGFGFLTYSCVEEVDA-A 53
Query: 91 AYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQI 149
R K V V G +R V E +P +M VK +++ G+ +E +R
Sbjct: 54 VCARPHKAAVRVVG--KRAVS---REDSVKPGAHLM--VKKLYVGGIKEDTEEYNLRGYF 106
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
K YG + I + + K++ + F+ F H+ ++ I K + + ++ LS
Sbjct: 107 KKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDT----VDKILQKHHAINGNNCEVGKVLS 162
Query: 210 NPMPK--TQAVKGGMSGGF--RIGHGSSRTFS-RYGRGSGRAGHHFNRANFQRGRGFYQH 264
M +Q +GG SG F R G+ R F R G G G G + GF
Sbjct: 163 KEMQSAGSQRGRGGASGNFMGRGGNFGGRNFGGRGGYGGGGGGSRGSYGGNGGDNGFGGD 222
Query: 265 GRNHSSRMG 273
++ SR G
Sbjct: 223 AGSYGSRPG 231
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 150 (57.9 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 63/228 (27%), Positives = 106/228 (46%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVE-G-VENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 90
+FVG + +W + K+ LKDY + G V + + D + G SRGF F++F + +
Sbjct: 2 MFVGGL--SW--DTSKKDLKDYFTKFGEVTDCTIKMD-PNTGRSRGFGFILFK---EPGS 53
Query: 91 AYKRL-QKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQI 149
K L QK + G R + A +++ DP VK +F+ G+ P E +IR+
Sbjct: 54 VEKVLEQKEHRLDG---RLIDPKKAMAMKK-DP-----VKKIFVGGLNPEATEEKIREYF 104
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR-AR 207
+G++ I L + T KR+ + FI F + + + K+F + SK +++ A+
Sbjct: 105 GEFGEIEAIELPMDPKTNKRRGFVFITFKEEDP----VKKVLEKKFHNVSGSKCEIKVAQ 160
Query: 208 LSNPMPKTQAVKGGMSGGF----RIGHGSSRTFSRYGRGSGRAGHHFN 251
+ Q GG G + R G G + + YG+ R GH N
Sbjct: 161 PKEVYQQQQFSSGGGRGSYGGRGRGGRGGGQGSANYGKTPRRGGHQNN 208
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 159 (61.0 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 74/268 (27%), Positives = 121/268 (45%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMF--SC 84
ED +FVG + +W + K+ LKDY + E ++ + + G SRGF F++F S
Sbjct: 42 EDAGKMFVGGL--SW--DTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESD 97
Query: 85 HVDAMAAYK--RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKE 142
VD + K RL + P+R + + +EP VK +F+ G+ P E
Sbjct: 98 SVDRVLQQKEHRLDGRQI---DPKRAMAIK-----KEP-------VKKIFVGGLNPETTE 142
Query: 143 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202
+IR+ +G++ I L + T+KR+ + FI F E AV I + K + SK
Sbjct: 143 EKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFK-EEFAVKKI--LEKKYHNVCGSKC 199
Query: 203 KLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA--NFQR--- 257
+++ ++ P Q + G GG G G GRG G G +N+ N+
Sbjct: 200 EIK--IAQPKEIYQQQQFGARGG---GFGGR------GRGRGGPGQSWNQGYNNYWNQGY 248
Query: 258 -GRGF-YQHGRNHSSRMGPTEYDFDNRY 283
G+G+ Y + + G YD+ + Y
Sbjct: 249 GGQGYGYGGQQGYGGYGGYGNYDYSSGY 276
Score = 38 (18.4 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 327 GPDRGYGEHHSYRRQPFSQG 346
G +GYG + Y +S G
Sbjct: 256 GGQQGYGGYGGYGNYDYSSG 275
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 159 (61.0 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 69/265 (26%), Positives = 121/265 (45%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF--SCH 85
+D+ +F+G + +K+ + + L +G V + + +D G SRGF FV+F +
Sbjct: 26 QDDGKMFIGGLSWDTSKKDLTEYLSRFGE--VVDCTIKTD-PVTGRSRGFGFVLFKDAAS 82
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
VD + K K D P+R A+ L+ +P K VF+ G+ P E QI
Sbjct: 83 VDKVLELKE-HKLDGKLIDPKR------AKALKGKEPP-----KKVFVGGLSPDTSEEQI 130
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
++ +G++ I L + T +R+ + FI ++ E + + + G ++K+
Sbjct: 131 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES-RYHQIGSGKCEIKVA 189
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA--N-FQRGRGFY 262
+ Q KGG G G G +R GRG G+ G ++N+ N + +G G Y
Sbjct: 190 QPKEVYRQQQQQQKGGR-GAAAGGRGGAR-----GRGRGQ-GQNWNQGFNNYYDQGYGNY 242
Query: 263 Q--HG--RNHSSRMGP--TEYDFDN 281
+G +N+S G T Y++ N
Sbjct: 243 NSAYGGDQNYSGYGGYDYTGYNYGN 267
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 159 (61.0 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 64/257 (24%), Positives = 115/257 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGALSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R QK + P+R V E + P + VK +F+ G+ E+ +RD +
Sbjct: 72 MNARPQKVNGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKED-TEHHLRDYFE 125
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG-NSKVKLRARLS 209
YG I + + K++ + F+ F H++ + I +G N + +++ ++
Sbjct: 126 QYGKTEVIEIMTDRGRGKKRGFAFVTFDDHDSVDKIV--IQKYHTVNGHNCETRVKQDMA 183
Query: 210 NPMPKTQAVKG----GMSGGFRIGHGSS-RTFSRYGRGSGRAGHHFNRANFQRGRGFYQH 264
+ + G G SGG R G+GS + + G G G +G ++ N GRG +
Sbjct: 184 SASSSQRGRSGSGNFGYSGGSR-GYGSGGQGYGNQGSGYGGSGS-YDSYNNGGGRGGFGS 241
Query: 265 GRNHSSRMGPTEYDFDN 281
G + G + DF N
Sbjct: 242 GSGSNFGGGGSYNDFGN 258
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 154 (59.3 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 55/217 (25%), Positives = 98/217 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ + AA
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDAAM 65
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+P V G + E + PD + VK +F+ G+ +E+ +RD Y
Sbjct: 66 NA--RPHKVNGRVVEPKRAVSREDSQRPDAYLT--VKKIFVGGIKEDTEEHHLRDYFGQY 121
Query: 153 G--DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 210
G +VI IV R + K++ + F+ F ++ + I +G++ ++R SN
Sbjct: 122 GKTEVIEIVTDRG--SGKKRGFAFVTFDDRDSVDKIV--IQKYHTVNGHN-CEVRKAPSN 176
Query: 211 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 247
++ + G GG G G + F R G SGR G
Sbjct: 177 QRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGG 211
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 154 (59.3 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 59/192 (30%), Positives = 86/192 (44%)
Query: 72 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 131
G +G+AF+ F+ DA A K ++ G RT+++ P KT+
Sbjct: 521 GKPKGYAFIEFASFEDAKEALNSCNKMEIE-G---RTIRLELQGSNSRSQPS-----KTL 571
Query: 132 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191
F+ G+ E +++ +G +R + + T K +GF+DF++ E A A A+
Sbjct: 572 FVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 628
Query: 192 NKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGS--GRAGHH 249
+ E DGN KV L PK + GG GG R G G R R GRG GR
Sbjct: 629 DGEI-DGN-KVTL----DWAKPKGEGGFGGRGGG-RGGFGG-RGGGRGGRGGFGGRGRGG 680
Query: 250 FN-RANFQRGRG 260
F R F+ GRG
Sbjct: 681 FGGRGGFRGGRG 692
Score = 55 (24.4 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 32 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDA 88
TL N+ T++ +K+ +D +E I LVS +G S+G A++ F DA
Sbjct: 396 TLLAKNLSFNITEDELKEVFED-AME----IRLVSQ---DGKSKGIAYIEFKSEADA 444
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 147 (56.8 bits), Expect = 9.0e-09, P = 9.0e-09
Identities = 56/213 (26%), Positives = 97/213 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 9 LFIGGLSFKTTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 64
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V E R P + VK +F V +E+ +RD +
Sbjct: 65 MNARPHKVDGRVVEPKRAVS---REDSRRPGAHLT--VKKIF---VGEDTEEHHLRDYFE 116
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 210
YG + I + + + K++ + F+ F H++ + I +G++ ++R LS
Sbjct: 117 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV--IQKYHTVNGHN-CEVRKALSK 173
Query: 211 P-MPKTQAVKGGMSGGFRIGHGSSRTFSRYGRG 242
M + + G SG G+G S + S YG G
Sbjct: 174 QEMASASSSQRGRSGQSGRGYGGSSSSSSYGSG 206
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 156 (60.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 49/190 (25%), Positives = 84/190 (44%)
Query: 74 SRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFL 133
SRGF FV FS + AA +P + G + E +P + VK +F+
Sbjct: 9 SRGFGFVTFSSMAEVDAAMAA--RPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFV 64
Query: 134 DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
G+ +E+ +RD + YG + I + + + K++ +GF+ F H+ + +
Sbjct: 65 GGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKY 122
Query: 194 EFSDGNSKVKLRARLSNP-MPKTQAVKGGMSGGFRIGHGSSRTFS-RYGRGSGRAGHHFN 251
+G++ ++R LS M + Q+ + G G F G G SR +G G G +
Sbjct: 123 HTINGHN-AEVRKALSRQEMQEVQSSRSGRGGNF--GFGDSRGGGGNFGPGPG-SNFRGG 178
Query: 252 RANFQRGRGF 261
+ GRGF
Sbjct: 179 SDGYGSGRGF 188
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 138 (53.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 38/147 (25%), Positives = 64/147 (43%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ E + YG + +V+ ++ T + + +GF+ F + A + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 191 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGG---FRIGHGSSRTFSRYGRGSGRAG 247
N K +V + S+ +++ +GG SGG FR G G R FSR G G G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSSGGRGFFRGGRGRGRGFSRGGGDRGYGG 125
Query: 248 HHF-NRANFQRGRGFYQHGRNHSSRMG 273
F +R+ G Y R+ G
Sbjct: 126 SRFESRSGGYGGSRDYYSSRSQGGSYG 152
>UNIPROTKB|D4ACP9 [details] [associations]
symbol:D4ACP9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00388048
ProteinModelPortal:D4ACP9 Ensembl:ENSRNOT00000002123 Uniprot:D4ACP9
Length = 253
Score = 153 (58.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 67/255 (26%), Positives = 110/255 (43%)
Query: 23 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
G P E LF+G + + +++++ + + + + + +V D Q + SR F FV
Sbjct: 3 GHNPKEQEQLSKLFIGGLSFETSDDSLREHFEQWDM--LTHC-VVMDPQTKR-SRVFGFV 58
Query: 81 MFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD--PEIMAHVKTVFLDGV 136
+SC VDA A R K D P+R P RE P + K +F+ G+
Sbjct: 59 TYSCVKEVDA-AMCARPHKVDGCVVEPKR--------PFREDSVKPVVCLLAKKIFIGGI 109
Query: 137 PPHWKENQIRDQIKGYGDVIRI-VLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+E+ +RD + YG + I ++ + + +++ + F+ F H V I
Sbjct: 110 KEDTEEHNLRDYFEKYGKIETIEIMEEDRQSGEKRGFAFVTFDDHYT-VDKIVVQKCHTI 168
Query: 196 SDGNSKVKLRARLSNPMP--KTQAVKGGMSGGF-----RIGHGSSRTFSRYGRGSGRAGH 248
+ N VK +A MP ++Q +GG S F GHG R F G GR G
Sbjct: 169 NRHNCDVK-KAPSKQEMPSVRSQRCRGGRSSNFMGRGGNFGHGR-RNFGHGGNFGGRGGG 226
Query: 249 HF-NRANFQRGRGFY 262
+R ++ G G Y
Sbjct: 227 SGGSRGSYGGGDGRY 241
Score = 136 (52.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 63/220 (28%), Positives = 91/220 (41%)
Query: 74 SRGFAFVMFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD--PEIMAHVK 129
SR F FV +SC VDA A R K D P+R P RE P + K
Sbjct: 52 SRVFGFVTYSCVKEVDA-AMCARPHKVDGCVVEPKR--------PFREDSVKPVVCLLAK 102
Query: 130 TVFLDGVPPHWKENQIRDQIKGYGDVIRI-VLARNMSTAKRKDYGFIDFSTHEAAVACIN 188
+F+ G+ +E+ +RD + YG + I ++ + + +++ + F+ F H V I
Sbjct: 103 KIFIGGIKEDTEEHNLRDYFEKYGKIETIEIMEEDRQSGEKRGFAFVTFDDHYT-VDKIV 161
Query: 189 AINNKEFSDGNSKVKLRARLSNPMP--KTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRA 246
+ N VK +A MP ++Q +GG S F +G G + +G G
Sbjct: 162 VQKCHTINRHNCDVK-KAPSKQEMPSVRSQRCRGGRSSNF-MGRGGN-----FGHGRRNF 214
Query: 247 GHHFNRANFQRGRGFYQHGRNHSSRMGPTEYDFDNRYTEF 286
GH NF GRG G S G D RY F
Sbjct: 215 GHG---GNFG-GRGGGSGGSRGSYGGG------DGRYNGF 244
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 159 (61.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 69/265 (26%), Positives = 121/265 (45%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF--SCH 85
+D+ +F+G + +K+ + + L +G V + + +D G SRGF FV+F +
Sbjct: 145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGE--VVDCTIKTD-PVTGRSRGFGFVLFKDAAS 201
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
VD + K K D P+R A+ L+ +P K VF+ G+ P E QI
Sbjct: 202 VDKVLELKE-HKLDGKLIDPKR------AKALKGKEPP-----KKVFVGGLSPDTSEEQI 249
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
++ +G++ I L + T +R+ + FI ++ E + + + G ++K+
Sbjct: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES-RYHQIGSGKCEIKVA 308
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA--N-FQRGRGFY 262
+ Q KGG G G G +R GRG G+ G ++N+ N + +G G Y
Sbjct: 309 QPKEVYRQQQQQQKGGR-GAAAGGRGGTR-----GRGRGQ-GQNWNQGFNNYYDQGYGNY 361
Query: 263 Q--HG--RNHSSRMGP--TEYDFDN 281
+G +N+S G T Y++ N
Sbjct: 362 NSAYGGDQNYSGYGGYDYTGYNYGN 386
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 159 (61.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 69/265 (26%), Positives = 121/265 (45%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF--SCH 85
+D+ +F+G + +K+ + + L +G V + + +D G SRGF FV+F +
Sbjct: 145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGE--VVDCTIKTD-PVTGRSRGFGFVLFKDAAS 201
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
VD + K K D P+R A+ L+ +P K VF+ G+ P E QI
Sbjct: 202 VDKVLELKE-HKLDGKLIDPKR------AKALKGKEPP-----KKVFVGGLSPDTSEEQI 249
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
++ +G++ I L + T +R+ + FI ++ E + + + G ++K+
Sbjct: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES-RYHQIGSGKCEIKVA 308
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA--N-FQRGRGFY 262
+ Q KGG G G G +R GRG G+ G ++N+ N + +G G Y
Sbjct: 309 QPKEVYRQQQQQQKGGR-GAAAGGRGGTR-----GRGRGQ-GQNWNQGFNNYYDQGYGNY 361
Query: 263 Q--HG--RNHSSRMGP--TEYDFDN 281
+G +N+S G T Y++ N
Sbjct: 362 NSAYGGDQNYSGYGGYDYTGYNYGN 386
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 159 (61.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 69/265 (26%), Positives = 121/265 (45%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF--SCH 85
+D+ +F+G + +K+ + + L +G V + + +D G SRGF FV+F +
Sbjct: 145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGE--VVDCTIKTD-PVTGRSRGFGFVLFKDAAS 201
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
VD + K K D P+R A+ L+ +P K VF+ G+ P E QI
Sbjct: 202 VDKVLELKE-HKLDGKLIDPKR------AKALKGKEPP-----KKVFVGGLSPDTSEEQI 249
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
++ +G++ I L + T +R+ + FI ++ E + + + G ++K+
Sbjct: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES-RYHQIGSGKCEIKVA 308
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA--N-FQRGRGFY 262
+ Q KGG G G G +R GRG G+ G ++N+ N + +G G Y
Sbjct: 309 QPKEVYRQQQQQQKGGR-GAAAGGRGGTR-----GRGRGQ-GQNWNQGFNNYYDQGYGNY 361
Query: 263 Q--HG--RNHSSRMGP--TEYDFDN 281
+G +N+S G T Y++ N
Sbjct: 362 NSAYGGDQNYSGYGGYDYTGYNYGN 386
>UNIPROTKB|G3N220 [details] [associations]
symbol:G3N220 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00700000104376 EMBL:DAAA02027300
Ensembl:ENSBTAT00000063435 OMA:GWEDRSH Uniprot:G3N220
Length = 310
Score = 156 (60.0 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 59/194 (30%), Positives = 87/194 (44%)
Query: 74 SRGFAFVMFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VK 129
SRGF FV +SC VDA A Y R K V P+R V RE + AH VK
Sbjct: 9 SRGFGFVTYSCVEEVDA-AMYARPHKRVV---EPKRAVS-------REDSVKPGAHLTVK 57
Query: 130 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 189
+F+ G+ +E +RD + YG + I + + + K++ F+ F H+ +
Sbjct: 58 KIFVGGIKEDTEEYNLRDCFENYGKIETIEVMEDRQSGKKRGCAFVTFDDHDTVDKIV-- 115
Query: 190 INNKEFSDG-NSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRA 246
+ +G N +VK +A M +Q +GG SG F +G G + F G GR
Sbjct: 116 VQKYHTINGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNF-MGRGGN--FGGGGGNFGRG 171
Query: 247 GHHFNRANFQRGRG 260
G+ R + G G
Sbjct: 172 GNFGGRGGYGGGGG 185
Score = 118 (46.6 bits), Expect = 0.00024, P = 0.00024
Identities = 47/180 (26%), Positives = 78/180 (43%)
Query: 92 YKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
Y +++ D ++ P + V RE + AH VK +F+ G+ +E +RD
Sbjct: 17 YSCVEEVDAAMYARPHKRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDC 76
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG-NSKVKLRAR 207
+ YG + I + + + K++ F+ F H+ + + +G N +VK +A
Sbjct: 77 FENYGKIETIEVMEDRQSGKKRGCAFVTFDDHDTVDKIV--VQKYHTINGHNCEVK-KAL 133
Query: 208 LSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHG 265
M +Q +GG SG F +G G + +G G G G NF GRG Y G
Sbjct: 134 SKQEMQSAGSQRGRGGGSGNF-MGRGGN-----FGGGGGNFGRG---GNFG-GRGGYGGG 183
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 158 (60.7 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 62/239 (25%), Positives = 107/239 (44%)
Query: 24 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 83
T P E LF+G + T + +K + +G + ++ ++ D + + SRGF F+ +S
Sbjct: 18 TEP-EQLRKLFIGGLDYRTTDDGLKAHFEKWG--NIVDVVVMKDPKTKR-SRGFGFITYS 73
Query: 84 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKE 142
M + +P + G RTV+ A P +E D P A VK +F+ G+ E
Sbjct: 74 --QSYMIDNAQNARPHKIDG---RTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDE 128
Query: 143 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202
+R+ K +G ++ + + + T K++ + FI+F ++ I K S N +
Sbjct: 129 ECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVD---KIILQKTHSIKNKTL 185
Query: 203 KLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGS-GRAGHHFNRANFQRGRG 260
++ ++ Q GG GG G G R R G+G G+ G + N Q G G
Sbjct: 186 DVKKAIAKQDMDRQ---GG--GG---GRGGPRAGGRGGQGDRGQGGGGWGGQNRQNGGG 236
>DICTYBASE|DDB_G0279639 [details] [associations]
symbol:DDB_G0279639 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 dictyBase:DDB_G0279639 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 Gene3D:1.10.720.30
EMBL:AAFI02000032 eggNOG:NOG135032 RefSeq:XP_641568.1
ProteinModelPortal:Q54WI5 EnsemblProtists:DDB0220678 GeneID:8622143
KEGG:ddi:DDB_G0279639 InParanoid:Q54WI5 OMA:ENTNTNE Uniprot:Q54WI5
Length = 1009
Score = 164 (62.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 73/258 (28%), Positives = 113/258 (43%)
Query: 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH 85
P D+ LFVGN+ N KE +K+ + +G ++ I L+ + + G ++G+AF+ +
Sbjct: 396 PLADS-LLFVGNLGNDVGKEQLKKMFEKHGT--IDRIILIKN-RRTGENKGYAFIDYRTK 451
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
+ A A L +VF RT++V +AE E M H KT+F+D +P + + I
Sbjct: 452 LQASTAKSSLGS--IVFNR--RTLRVDWAENCNTM--ESM-HSKTIFVDRLPRSFADVPI 504
Query: 146 -RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204
R +G + + N R + FID++ E A +N K+ K+
Sbjct: 505 LRKVFSPFGKIKDCNVVPNYYGQPR-GFAFIDYNNVEDAEKAQRMMNEKDLKG----YKI 559
Query: 205 RARLSNPM-PKTQAVK--GGMSGGFRIGHGSSRTFSRYGRGSGRAG------HHFNRAN- 254
R +NP P VK SG SS F GRG G G HF +
Sbjct: 560 RVNFANPSKPGHSLVKPPSQQSGRSHESVPSSSPFRGRGRGRGSMGVPPPNSQHFGIGSV 619
Query: 255 ---FQRGRGFYQHGRNHS 269
F+ GRG + +HS
Sbjct: 620 GGGFRGGRGVGGYPGDHS 637
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 156 (60.0 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 63/266 (23%), Positives = 111/266 (41%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--H 85
E LF+G T E+++ K G+ + + ++ D + SRGF FV ++
Sbjct: 11 EQLQKLFIGGWSFETTDESLRSHFKQRGI--LTDCVVMRD-PNTKRSRGFGFVTYTAVEE 67
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
VD A + R K D P+RT + E + P + VK +F G+ +E+ +
Sbjct: 68 VDP-AMHARPHKVDGRVVEPKRT---SSKEDSQRPGAHLT--VKKIFAGGIKEDTEEHHL 121
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAINNKEFSDGNSK 201
RD + YG + I + + + K++ + F+ F H++ + + +N + +
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKAL 181
Query: 202 VKLRARLSNPMPKTQAVKGGMSGGFR-IGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRG 260
K ++ + Q+ G GGFR G G + F G GR G F + G G
Sbjct: 182 SKQEMASASCSQRGQSGSGNF-GGFRGCGFGGNDNFGHGGNFRGRGG--FGGSGGGGGYG 238
Query: 261 FYQHGRNHSSRMGPTEYDFDNRYTEF 286
G N G + + R+ +F
Sbjct: 239 GRGDGYNGFDNDG-SNFGGGRRHNDF 263
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 37/143 (25%), Positives = 65/143 (45%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ E + YG + +V+ ++ T + + +GF+ F + A + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 191 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGG---FRIGHGSSRTFSRYGRGSGRAG 247
N K +V + S+ +++ +GG +GG FR G G R FSR G G G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGG 125
Query: 248 HHF-NRANFQRGRGFYQHGRNHS 269
+ F +R+ G Y R+ S
Sbjct: 126 NRFESRSGGYGGSRDYYSSRSQS 148
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 37/143 (25%), Positives = 65/143 (45%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ E + YG + +V+ ++ T + + +GF+ F + A + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 191 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGG---FRIGHGSSRTFSRYGRGSGRAG 247
N K +V + S+ +++ +GG +GG FR G G R FSR G G G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGG 125
Query: 248 HHF-NRANFQRGRGFYQHGRNHS 269
+ F +R+ G Y R+ S
Sbjct: 126 NRFESRSGGYGGSRDYYSSRSQS 148
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 37/143 (25%), Positives = 65/143 (45%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ E + YG + +V+ ++ T + + +GF+ F + A + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 191 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGG---FRIGHGSSRTFSRYGRGSGRAG 247
N K +V + S+ +++ +GG +GG FR G G R FSR G G G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGG 125
Query: 248 HHF-NRANFQRGRGFYQHGRNHS 269
+ F +R+ G Y R+ S
Sbjct: 126 NRFESRSGGYGGSRDYYSSRSQS 148
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 37/143 (25%), Positives = 65/143 (45%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ E + YG + +V+ ++ T + + +GF+ F + A + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 191 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGG---FRIGHGSSRTFSRYGRGSGRAG 247
N K +V + S+ +++ +GG +GG FR G G R FSR G G G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGG 125
Query: 248 HHF-NRANFQRGRGFYQHGRNHS 269
+ F +R+ G Y R+ S
Sbjct: 126 NRFESRSGGYGGSRDYYSSRSQS 148
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 154 (59.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 62/233 (26%), Positives = 103/233 (44%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +FVG + +W + K+ LKDY + E ++ + + G SRGF F++F
Sbjct: 67 EDAGKMFVGGL--SW--DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK--- 119
Query: 87 DAMAAYKRL-QKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
DA + K L QK + G R + A +++ DP VK +F+ G+ P E +I
Sbjct: 120 DAASVEKVLDQKEHRLDG---RVIDPKKAMAMKK-DP-----VKKIFVGGLNPEATEEKI 170
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKL 204
R+ +G++ I L + KR+ + FI F E + + K+F SK ++
Sbjct: 171 REYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEP----VKKVLEKKFHTVSGSKCEI 226
Query: 205 RARLSNPMPKTQAVKGGMSGGFRIGH------GSSRTFSRYGRGSGRAGHHFN 251
+ + + Q G G G+ G + + YG+ R GH N
Sbjct: 227 KVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGQGSTNYGKSQRRGGHQNN 279
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 154 (59.3 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 69/239 (28%), Positives = 109/239 (45%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +FVG + +W + K+ LKDY + E ++ + + G SRGF F++F
Sbjct: 67 EDAGKMFVGGL--SW--DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK--- 119
Query: 87 DAMAAYKRL-QKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
DA + K L QK + G R + A +++ DP VK +F+ G+ P E +I
Sbjct: 120 DATSVEKVLDQKEHRLDG---RVIDPKKAMAMKK-DP-----VKKIFVGGLNPEATEEKI 170
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
R+ +G++ I L + + KR+ + FI F E + + K+F + K
Sbjct: 171 REYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEP----VKKVLEKKFHTISGS-KCE 225
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQH 264
+++ P Q + G SGG R S G GSG G N QR RG +Q+
Sbjct: 226 IKVAQPKEVYQQQQYG-SGG-RGNRNRGNRGSGGGGGSGGQGST-NYGKSQR-RGGHQN 280
>UNIPROTKB|J9NZR9 [details] [associations]
symbol:J9NZR9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03000342
Ensembl:ENSCAFT00000001210 OMA:GSKINAN Uniprot:J9NZR9
Length = 269
Score = 153 (58.9 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 63/219 (28%), Positives = 100/219 (45%)
Query: 72 GLSRGFAFVMF--SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 129
G SRGF FV+F + VD + K K D + P+R A+ L+EP P K
Sbjct: 49 GRSRGFGFVLFKEAASVDKVLELKE-HKLDSMLIDPKR------AKALKEP-P------K 94
Query: 130 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 189
VF+ G+ P E QI++ + +G++ I L + T +R+ + FI + T E V +
Sbjct: 95 KVFVGGLSPDTYEEQIKEYLGAFGEIENIELPMDTKTNERRGFCFITY-TDEKPVKKLLE 153
Query: 190 INNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRA-GH 248
+ G ++K+ + Q KGG S G SR +G+G G+
Sbjct: 154 NRYHQIGSGKCEIKVAEPKEIYRQQQQQQKGGRSAAAG-ERGGSRG---HGQGQGQNWNQ 209
Query: 249 HFNRANFQRGRGFYQ--HG--RNHSS--RMGPTEYDFDN 281
FN + +G G Y +G +N+S G TE+++ N
Sbjct: 210 RFNHC-YDQGNGNYNSAYGGDQNYSDYGSYGYTEFNYGN 247
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 156 (60.0 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 54/217 (24%), Positives = 100/217 (46%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG + + T + +++ +G + +I ++ D + SRGF FV FS + AA
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGE--ITDIIVMRDPTTKR-SRGFGFVTFSGKTEVDAAM 81
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K Q+P ++ G +TV A P + + E K +++ GV E+ + +
Sbjct: 82 K--QRPHIIDG---KTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTK 136
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS-N 210
YG V + + + +T K + +GF+ F H++ C+ + +G+ + +R LS +
Sbjct: 137 YGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV--LQKSHMVNGH-RCDVRKGLSKD 193
Query: 211 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 247
M K Q + + G R G ++ G G G G
Sbjct: 194 EMSKAQMNRDRETRGGRSRDGQRGGYNGGGGGGGGWG 230
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 154 (59.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 68/265 (25%), Positives = 114/265 (43%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T E+++ + +G+ + + ++ D + SRGF FV ++ + AA
Sbjct: 16 LFIGGLSFETTNESLRSHFEQWGM--LRDCVVMRDPNTKH-SRGFGFVTYATVKEVDAA- 71
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
R K D P+R V E + P + V+ +F+ G+ +E+ +RD K Y
Sbjct: 72 -RSHKVDGRVVEPKRAVS---REDSQRPGAHLT--VRKIFVGGIKEDTEEHHLRDYFKQY 125
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA---IN--NKEFSDGNSKVKLR-A 206
G + I + + + K++ + + F H+ I +N N E SK ++ A
Sbjct: 126 GKIEVIEIMTDRGSGKKRGFASVTFDDHDKDKIVIQKYYIVNGHNCEVRKALSKQEMASA 185
Query: 207 RLSNPMPKTQAVKGGMSGGF----RIGHGSSRT----FS--RYGRGSGRAGHHFNR---- 252
S + GG GGF GHG + + FS + G G G +G +N
Sbjct: 186 SSSRGRSGSGNFGGGRGGGFGGNDNFGHGGNFSGQGGFSGSQSGGGYGGSGDGYNGFGND 245
Query: 253 -ANFQRGRGFYQHGR--NHSSRMGP 274
NF G+ + G N SS GP
Sbjct: 246 GGNFGGGKIYNDFGNYNNQSSNFGP 270
>UNIPROTKB|F1MW51 [details] [associations]
symbol:F1MW51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02008023 IPI:IPI00696055
Ensembl:ENSBTAT00000016590 Uniprot:F1MW51
Length = 274
Score = 153 (58.9 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 72/257 (28%), Positives = 114/257 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T E+++ + + G + + + D + SRGF FV ++ V+ +
Sbjct: 16 LFIGGLSFETTDESLRSRFEQGGT--LTDCVVRRD-PNAKRSRGFGFVTYAT-VEEVKG- 70
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQIK 150
+P V ER V+ +A RE AH VK VF+ G+ +E+ +RD +
Sbjct: 71 ----RPHV----DERVVEPKWAIS-REDSQRPGAHLPVKKVFVGGIKEDTEEHHLRDYFE 121
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS-KVKLRARLS 209
YG + I + + + KR + FI F H++ I+ I +++ GN ++R LS
Sbjct: 122 QYGRIEVIEIMTDQGSGKR-GFAFILFDDHDS----IDKIVIQKYHTGNGLNCEVRKALS 176
Query: 210 NP-MPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF-QRGRGFYQHG-R 266
M + + GG G G S F R G SGR G +R G G+ +G
Sbjct: 177 KQEMASASSSQRDFGGGRGGGLGGSDNFGRGGNFSGRGGFGGSRGGGGYAGSGYCYNGFG 236
Query: 267 NHSSRMGPT-EY-DFDN 281
N S G Y DF N
Sbjct: 237 NDGSNFGGGGSYNDFGN 253
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 154 (59.3 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 61/220 (27%), Positives = 98/220 (44%)
Query: 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVD 87
++ TL + N+ + T+E ++ E E + Q++ G S+G+AF+ F+ D
Sbjct: 109 ESKTLVLSNLSYSATEETLQ--------EVFEKATFIKVPQNQNGKSKGYAFIEFASFED 160
Query: 88 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRD 147
A A K ++ G R +++ P P+ KT+F+ G+ E +++
Sbjct: 161 AKEALNSCNKREIE-G---RAIRLELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETLKE 215
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 207
G +R + + T K +GF+DF++ E A A A+ + E DGN KV L
Sbjct: 216 SFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL--- 267
Query: 208 LSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 247
PK + GG GG R G G GRG GR G
Sbjct: 268 -DWAKPKGEGGFGGRGGG-RGGFG--------GRGGGRGG 297
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 153 (58.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 62/231 (26%), Positives = 104/231 (45%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +FVG + +W + K+ LKDY + E ++ + + G SRGF F++F
Sbjct: 72 EDAGKMFVGGL--SW--DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK--- 124
Query: 87 DAMAAYKRL-QKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
D+ + K L QK + G R + A +++ DP VK +F+ G+ P E +I
Sbjct: 125 DSSSVEKVLDQKEHRLDG---RVIDPKKAMAMKK-DP-----VKKIFVGGLNPEATEEKI 175
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKL 204
R+ +G++ I L + KR+ + FI F + + + K+F SK ++
Sbjct: 176 REYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDP----VKKVLEKKFHTVSGSKCEI 231
Query: 205 RARLSNPMPKTQAVKGGMSG----GFRIGHGSSRTFSRYGRGSGRAGHHFN 251
+ + + Q G G G R G G + + YG+ R GH N
Sbjct: 232 KVAQPKEVYQQQQYGSGGRGNRNRGNR-GSGGGQGSTNYGKSQRRGGHQNN 281
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 153 (58.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 62/231 (26%), Positives = 104/231 (45%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +FVG + +W + K+ LKDY + E ++ + + G SRGF F++F
Sbjct: 72 EDAGKMFVGGL--SW--DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK--- 124
Query: 87 DAMAAYKRL-QKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
D+ + K L QK + G R + A +++ DP VK +F+ G+ P E +I
Sbjct: 125 DSSSVEKVLDQKEHRLDG---RVIDPKKAMAMKK-DP-----VKKIFVGGLNPEATEEKI 175
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKL 204
R+ +G++ I L + KR+ + FI F + + + K+F SK ++
Sbjct: 176 REYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDP----VKKVLEKKFHTVSGSKCEI 231
Query: 205 RARLSNPMPKTQAVKGGMSG----GFRIGHGSSRTFSRYGRGSGRAGHHFN 251
+ + + Q G G G R G G + + YG+ R GH N
Sbjct: 232 KVAQPKEVYQQQQYGSGGRGNRNRGNR-GSGGGQGSTNYGKSQRRGGHQNN 281
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 141 (54.7 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 59/220 (26%), Positives = 103/220 (46%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS--CHVDA-M 89
LF+G + + T+E++K + +G E + + ++ + + SRGF FV FS VDA M
Sbjct: 23 LFIGGLSSETTEESLKNYYQQWG-ELTDCV-VIRGLASQK-SRGFGFVTFSSVAEVDAAM 79
Query: 90 AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQI 149
AA VV P+R V +E + +VK +F+ G+ +E+ +R+
Sbjct: 80 AARPHSIDGRVV--DPKRAVSREKSEKQGS-----LVNVKKLFVGGIKEDTEEHHLREYF 132
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAINNKEFSDGNSKVKLR 205
+ YG + I + + + K++ +GF+ F ++ + +AIN G K R
Sbjct: 133 EKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQKYHAINGHRAEVG--KALSR 190
Query: 206 ARLSNPM-PKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSG 244
+ P+++ KGG G F + SS +GRG G
Sbjct: 191 QEMKEIQGPRSR--KGGPFG-FSV---SSNGGGNFGRGPG 224
Score = 55 (24.4 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 220 GGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGR-GFYQHGRNHSSRMGPTEY 277
GG G R G+G+ FS G G+ + +N+ R G + GRN + G Y
Sbjct: 277 GGEYAGRRPGYGNQWEFSGGGYGNNFGNYDQQPSNYGPMRNGIFGVGRNIVAPYGGGNY 335
Score = 38 (18.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 224 GGFRIGHGSSRTFSRYGRGSG 244
GG G G + YG GSG
Sbjct: 331 GGGNYGPGGNGGSGGYGGGSG 351
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 153 (58.9 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 62/231 (26%), Positives = 104/231 (45%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +FVG + +W + K+ LKDY + E ++ + + G SRGF F++F
Sbjct: 85 EDAGKMFVGGL--SW--DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK--- 137
Query: 87 DAMAAYKRL-QKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
D+ + K L QK + G R + A +++ DP VK +F+ G+ P E +I
Sbjct: 138 DSSSVEKVLDQKEHRLDG---RVIDPKKAMAMKK-DP-----VKKIFVGGLNPEATEEKI 188
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKL 204
R+ +G++ I L + KR+ + FI F + + + K+F SK ++
Sbjct: 189 REYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDP----VKKVLEKKFHTVSGSKCEI 244
Query: 205 RARLSNPMPKTQAVKGGMSG----GFRIGHGSSRTFSRYGRGSGRAGHHFN 251
+ + + Q G G G R G G + + YG+ R GH N
Sbjct: 245 KVAQPKEVYQQQQYGSGGRGNRNRGNR-GSGGGQGSTNYGKSQRRGGHQNN 294
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 156 (60.0 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 64/255 (25%), Positives = 110/255 (43%)
Query: 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS--CHV 86
D LF+G I + +++ ++G V + ++ + + G RGF FV FS +
Sbjct: 4 DQGKLFIGGISWDTDENLLREYFSNFGE--VLQVTVMRE-KATGRPRGFGFVAFSDPAVI 60
Query: 87 DAMAAYKR-LQKPDV----VFGHPERTV--KVAFAEPLREPDPEIMAHVKTVFLDGVPPH 139
D + K + DV E++ + R D K +F+ G+PP
Sbjct: 61 DRVLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPA 120
Query: 140 WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 199
++ R + YG V V+ + +T + + +GF+ F + ++ ++ + +K F D N
Sbjct: 121 LTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDS----VDLVLHKTFHDLN 176
Query: 200 SKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGR 259
K + + +PK A G SGG R G G + F YG GSG +G+ R + R
Sbjct: 177 GK---QVEVKRALPK-DANPGIASGGGR-GSGGAGGFPGYG-GSGGSGYE-GRVDSNR-- 227
Query: 260 GFYQHGRNHSSRMGP 274
Y +N S P
Sbjct: 228 --YMQPQNTGSGYPP 240
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 36/141 (25%), Positives = 63/141 (44%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ + E + D +G + +V+ ++ T + + +GFI F+ E A + A+
Sbjct: 8 LFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 191 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHF 250
N + DG + R+ + + +GG GG+ G G R G GSGR +
Sbjct: 68 NGESL-DGR-----QIRVDHAGKSARGSRGGAFGGYERGRGYPRGGGDQGYGSGRYDNRP 121
Query: 251 NRANFQRGRGFYQHGRNHSSR 271
F G G Y R++ R
Sbjct: 122 GAYGFGYGYG-YGRSRDYGGR 141
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 155 (59.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 69/266 (25%), Positives = 115/266 (43%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVE-G-VENINLVSDIQHEGLSRGFAFVMFS-- 83
ED +FVG + +W + K+ LKDY + G V + + D + G SRGF F++F
Sbjct: 92 EDAGKMFVGGL--SW--DTSKKDLKDYFSKFGEVTDCTIKMD-PNTGRSRGFGFILFKEP 146
Query: 84 CHVDAMAAYK--RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 141
VD + A K RL + P++ + + +EP VK +F+ G+ P
Sbjct: 147 SGVDKVLAQKEHRLDGRQI---DPKKAMAMK-----KEP-------VKKIFVGGLNPETT 191
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI--NNKEFSDGN 199
E +IR+ +G++ I L + + KR+ + FI F EA + N D +
Sbjct: 192 EERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILEKKYHNVSGTKDTS 251
Query: 200 SKVKL-RARLSNPMPKTQAVK-GGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQR 257
K L +++ P Q + GG GG G G + +G +++N+ +
Sbjct: 252 GKEGLCEIKIAQPKEVYQQQQYGGRFGGGGRGRGRGGQGQNWNQGYN---NYWNQGYGNQ 308
Query: 258 GRGFYQHGRNHSSRMGPTEYDFDNRY 283
G G Y + + G YD+ Y
Sbjct: 309 GYGGYGGQQGYGGYGGYGNYDYSGGY 334
>UNIPROTKB|F1LW17 [details] [associations]
symbol:F1LW17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00567724
Ensembl:ENSRNOT00000046658 ArrayExpress:F1LW17 Uniprot:F1LW17
Length = 249
Score = 150 (57.9 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 60/223 (26%), Positives = 101/223 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G ++D ++ SRGF F+ +SC VDA A
Sbjct: 34 LFIGGLSFETTDDSLREHFEKWGT--------LTDCGNKR-SRGFGFLTYSCVEEVDA-A 83
Query: 91 AYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQI 149
R K V V G +R V E +P +M VK +++ G+ +E +R
Sbjct: 84 VCARPHKAAVRVVG--KRAVS---REDSVKPGAHLM--VKKLYVGGIKEDTEEYNLRGYF 136
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
K YG + I + + K++ + F+ F H+ ++ I K + + ++ LS
Sbjct: 137 KKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDT----VDKILQKHHAINGNNCEVGKVLS 192
Query: 210 NPMPK--TQAVKGGMSGGF--RIGHGSSRTFS-RYGRGSGRAG 247
M +Q +GG SG F R G+ R F R G G G G
Sbjct: 193 KEMQSAGSQRGRGGASGNFMGRGGNFGGRNFGGRGGYGGGGGG 235
>UNIPROTKB|F1LM17 [details] [associations]
symbol:F1LM17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 IPI:IPI00564342 PRIDE:F1LM17
Ensembl:ENSRNOT00000040711 Uniprot:F1LM17
Length = 440
Score = 156 (60.0 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 59/202 (29%), Positives = 89/202 (44%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR--G 76
GK G S N+T FVG TKE ++ K EG+ + ++ D Q + + G
Sbjct: 62 GKVLGVCFSVANNT-FVGFTPKNKTKENFEEFSKV--TEGL--VGIILDHQPDDKKKNWG 116
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F F+ + H A A L VV+G+ V V A+P+ EPDPE MA VK +F+ +
Sbjct: 117 FCFLEYEDHKSAAQARLWLMSGKVVWGN---VVTVERADPVEEPDPEGMAKVKVLFVRNL 173
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G++ R+ K DY F+ F EA V ++ +N KE
Sbjct: 174 ATTVTEEILEKSFSQFGELERV--------KKLTDYAFVHFEDREA-VKAVDEMNGKEIE 224
Query: 197 DGNSKVKLRARLSNPMPKTQAV 218
++ L + QAV
Sbjct: 225 GEEIEIVLAMLPDRKRKEHQAV 246
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 134 (52.2 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 37/147 (25%), Positives = 64/147 (43%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ E + YG + +V+ ++ T + + +GF+ F + A + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 191 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGG---FRIGHGSSRTFSRYGRGSGRAG 247
N K +V + S+ +++ +GG +GG FR G G R FSR G G G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGG 125
Query: 248 HHF-NRANFQRGRGFYQHGRNHSSRMG 273
F +R+ G Y R+ G
Sbjct: 126 SRFESRSGGYGGSRDYYSSRSQGGGYG 152
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 158 (60.7 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 70/240 (29%), Positives = 107/240 (44%)
Query: 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDA 88
++ TL V N+ ++E +++ K +I + + ++G +G+AFV F DA
Sbjct: 457 ESKTLIVNNLSYAASEETLQELFKK-----ATSIKMPQN--NQGRPKGYAFVEFPTAEDA 509
Query: 89 MAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE-----IMAHVKTVFLDGVPPHWKEN 143
A ++ G R +++ F+ P + KT+F+ G+ E
Sbjct: 510 KEALNSCNNTEIE-G---RAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEE 565
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203
+R+ +G RIV R+ T K +GF+DFS+ E A A A+ + E DGN KV
Sbjct: 566 TLRESFEGSISA-RIVTDRD--TGSSKGFGFVDFSSPEDAKAAKEAMEDGEI-DGN-KVT 620
Query: 204 LRARLSNPMPKTQAVKGGMSGGF--RIGHGSSRT-FSRYGRGSGRAGHHFNRANFQRGRG 260
L + P + Q GG GGF R G G R F GRG GR G F+ RG
Sbjct: 621 LD--FAKPKGEFQR-GGGFGGGFGGRGGRGGGRGGFG--GRGGGR-GFGGRGGGFRGSRG 674
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 158 (60.7 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 70/240 (29%), Positives = 107/240 (44%)
Query: 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDA 88
++ TL V N+ ++E +++ K +I + + ++G +G+AFV F DA
Sbjct: 459 ESKTLIVNNLSYAASEETLQELFKK-----ATSIKMPQN--NQGRPKGYAFVEFPTAEDA 511
Query: 89 MAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE-----IMAHVKTVFLDGVPPHWKEN 143
A ++ G R +++ F+ P + KT+F+ G+ E
Sbjct: 512 KEALNSCNNTEIE-G---RAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEE 567
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203
+R+ +G RIV R+ T K +GF+DFS+ E A A A+ + E DGN KV
Sbjct: 568 TLRESFEGSISA-RIVTDRD--TGSSKGFGFVDFSSPEDAKAAKEAMEDGEI-DGN-KVT 622
Query: 204 LRARLSNPMPKTQAVKGGMSGGF--RIGHGSSRT-FSRYGRGSGRAGHHFNRANFQRGRG 260
L + P + Q GG GGF R G G R F GRG GR G F+ RG
Sbjct: 623 LD--FAKPKGEFQR-GGGFGGGFGGRGGRGGGRGGFG--GRGGGR-GFGGRGGGFRGSRG 676
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 158 (60.7 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 71/243 (29%), Positives = 108/243 (44%)
Query: 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDA 88
++ TL V N+ ++E +++ K +I + + ++G +G+AFV F DA
Sbjct: 459 ESKTLIVNNLSYAASEETLQELFKK-----ATSIKMPQN--NQGRPKGYAFVEFPTAEDA 511
Query: 89 MAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE-----IMAHVKTVFLDGVPPHWKEN 143
A ++ G R +++ F+ P + KT+F+ G+ E
Sbjct: 512 KEALNSCNNTEIE-G---RAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEE 567
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203
+R+ +G RIV R+ T K +GF+DFS+ E A A A+ + E DGN KV
Sbjct: 568 TLRESFEGSISA-RIVTDRD--TGSSKGFGFVDFSSPEDAKAAKEAMEDGEI-DGN-KVT 622
Query: 204 LRARLSNPMPKTQAVKGGMSGGF-----RIGHGSSRT-FSRYGRGSGRAGHHFNRANFQR 257
L + P + Q GG GGF R G G R F GRG GR G F+
Sbjct: 623 LD--FAKPKGEFQR-GGGFGGGFGGRGGRGGRGGGRGGFG--GRGGGR-GFGGRGGGFRG 676
Query: 258 GRG 260
GRG
Sbjct: 677 GRG 679
Score = 151 (58.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 67/209 (32%), Positives = 92/209 (44%)
Query: 70 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE-----I 124
++G +G+AFV F DA A ++ G R +++ F+ P +
Sbjct: 493 NQGRPKGYAFVEFPTAEDAKEALNSCNNTEIE-G---RAIRLEFSSPSWQKGNMNARGGF 548
Query: 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 184
KT+F+ G+ E +R+ +G RIV R+ T K +GF+DFS+ E A
Sbjct: 549 NQQSKTLFVRGLSEDTTEETLRESFEGSISA-RIVTDRD--TGSSKGFGFVDFSSPEDAK 605
Query: 185 ACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSG 244
A A+ + E DGN KV L + P + Q GG GGF G G R GRG G
Sbjct: 606 AAKEAMEDGEI-DGN-KVTLD--FAKPKGEFQR-GGGFGGGFG-GRGG-----RGGRGGG 654
Query: 245 RAGHHFNRANFQRGRGFYQHGRNHSSRMG 273
R G R GRGF GR R G
Sbjct: 655 RGGFG-GRGG---GRGF--GGRGGGFRGG 677
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 152 (58.6 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 57/218 (26%), Positives = 103/218 (47%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGL--SRGFAFVMFSCHVDAMA 90
LFVG + T + ++ + +G N+ +Q++ L SR F FV +S +A A
Sbjct: 10 LFVGGLNVQTTNDGLRSYFEQFG-----NLTDCVVVQNDQLQRSRCFGFVTYSTSEEADA 64
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIRDQI 149
A +P VV G + V+V A + PE +A VK +F+ G+ +E + +
Sbjct: 65 AMAA--RPHVVDG---KNVEVKRAVAREDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFF 119
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+G + + + + T K++ +GF+ F +++A + + +G+ KV+++ L+
Sbjct: 120 SQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAV--VLKFHMINGH-KVEVKKALT 176
Query: 210 NPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 247
+ QA GG GG G G ++ G G GR G
Sbjct: 177 KQ--EIQAA-GGARGGRGRGGGRGMGRNQNGFGGGRGG 211
>UNIPROTKB|F1M6S2 [details] [associations]
symbol:F1M6S2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00782238
ProteinModelPortal:F1M6S2 Ensembl:ENSRNOT00000030712 Uniprot:F1M6S2
Length = 223
Score = 146 (56.5 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 56/229 (24%), Positives = 101/229 (44%)
Query: 23 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
G P E LF+G + T +++++ + +G ++ + ++ D+Q + SR F FV
Sbjct: 8 GHDPKEPEQLRKLFIGCLSFETTDDSLREHFEKWGT--LDCV-VMRDLQIKR-SRSFGFV 63
Query: 81 M-FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPH 139
+SC + AA +P V GH + E +P + VK +F+ G+
Sbjct: 64 STYSCVKEVDAAM--CARPHKVDGHVVEPKRAVSREDSVKPGAHLT--VKKIFVGGIKED 119
Query: 140 WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 199
+E +RD + YG + I + + + K++ + F+ F H+ + + + N
Sbjct: 120 TEEYNLRDYFEKYGKIEIIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVQKYHT--INGHN 177
Query: 200 SKVKLRARLSNPMPK--TQAVKGGM--SGGFRIGHGSSRTFSRYGRGSG 244
+VK +A M +Q +GG GG GHG + YG G G
Sbjct: 178 YEVK-KAVSKQEMQSAGSQRGRGGNFGGGGGNFGHGGNG----YGYGDG 221
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 151 (58.2 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 68/261 (26%), Positives = 113/261 (43%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
ED+ +F+G + +K+ + L +G V + + +D G SRGF FV+F D
Sbjct: 27 EDDGKMFIGGLSWDTSKKDLTDYLSRFGE--VLDCTIKTD-PLTGRSRGFGFVLFK---D 80
Query: 88 AMAAYKRLQ----KPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
A + + L+ K D P+R + EP P K VF+ G+ P E
Sbjct: 81 AESVDRVLELTEHKLDGKLIDPKRAKAIKGKEP-----P------KKVFVGGLSPDITEE 129
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203
Q+R+ YG++ I L + T +R+ + F+ F+ E + N+ G+ K +
Sbjct: 130 QLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQ---KLLENRYHQIGSGKCE 186
Query: 204 LRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSG-RAGHH-FNRANFQRGRGF 261
++ + + Q + GG G G R R GRG G G++ + N+ G G
Sbjct: 187 IKVAQPKEVYRQQQNRDRGFGG---GRGGFR--GRGGRGQGFNQGYNNYYGQNYGGGYGN 241
Query: 262 -YQHGRNHSSRMGPTEYDFDN 281
Y G N S + Y++ N
Sbjct: 242 GYNQGYNGYSGYDYSGYNYQN 262
>UNIPROTKB|D4A6Z0 [details] [associations]
symbol:D4A6Z0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00948011
ProteinModelPortal:D4A6Z0 Ensembl:ENSRNOT00000067831 Uniprot:D4A6Z0
Length = 176
Score = 133 (51.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 40/154 (25%), Positives = 74/154 (48%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
E LF+G + T +++++ K + + + ++ D Q E SRGF FV +SC +
Sbjct: 10 EQRRKLFIGGLSFETTDDSLREHFK---WDTLTDCVVMRDPQTER-SRGFGFV-YSCVEE 64
Query: 88 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRD 147
AA +P V GH + E +P +M VK +F+ G+ +E +RD
Sbjct: 65 VDAAM--CARPHKVDGHVVEPKRAISREDSVKPGAHLM--VKKIFVGGIKEDTEEYNLRD 120
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 181
+ YG++ I + + + K++ + F+ F H+
Sbjct: 121 YFE-YGNIKTIEVVEDRQSGKKRGFAFLTFDDHD 153
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 152 (58.6 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 71/270 (26%), Positives = 120/270 (44%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +FVG + +W + K+ LKDY + E ++ + + G SRGF F++F
Sbjct: 67 EDAGKMFVGGL--SW--DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK--- 119
Query: 87 DAMAAYKRL-QKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
DA + K L QK + G R + A +++ DP VK +F+ G+ P E +I
Sbjct: 120 DAASVEKVLDQKEHRLDG---RVIDPKKAMAMKK-DP-----VKKIFVGGLNPEATEEKI 170
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKL 204
R+ +G++ I L + KR+ + FI F E + + K+F SK ++
Sbjct: 171 REYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEP----VKKVLEKKFHTVSGSKCEI 226
Query: 205 RARLSNPMPKTQAVKGGMSG----GFR-IGHGSSRTFSR-YG----RGSG-RAGHHFNRA 253
+ + + Q G G G R G G S+++++ YG +G G + G+
Sbjct: 227 KVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYG 286
Query: 254 NFQRGR-GFYQHGRNHSSRMGPTEYDFDNR 282
+ G+Y +G + G T Y R
Sbjct: 287 GYDYSPYGYYGYGPGYDYSQGSTNYGKSQR 316
>UNIPROTKB|F1MTY3 [details] [associations]
symbol:F1MTY3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00699446 Ensembl:ENSBTAT00000013110 Uniprot:F1MTY3
Length = 301
Score = 151 (58.2 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 59/219 (26%), Positives = 95/219 (43%)
Query: 74 SRGFAFVMFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 131
SRGF FV ++ VDA A R K D P+R V E + P + VK +
Sbjct: 50 SRGFRFVTYATVEEVDA-AMNARPHKVDRRVVEPKRGVS---REGSQRPGAHLT--VKKI 103
Query: 132 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI---- 187
F G+ +E +RD + G + I + + S+ K++ + F+ F H++ +
Sbjct: 104 FAGGIKEDTEERHLRDYFENNGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQKY 163
Query: 188 NAIN--NKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSG- 244
+ +N N+E SK ++ + S+ ++ + G GG G G + F G GSG
Sbjct: 164 HTVNGHNREVRKALSKQEMASASSSQRGRSGS--GNFGGGRGGGFGGNENFGHGGNGSGG 221
Query: 245 -RAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEY-DFDN 281
R G + G G+ G + S+ G Y DF N
Sbjct: 222 SRGGGRYGGG----GDGYNGFGNDGSNFGGGGSYSDFGN 256
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 149 (57.5 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 63/249 (25%), Positives = 111/249 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLTFETTDESLRSHFEQWGT--LTECVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D PER V RE + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPERAVS-------REDSHSLT--VK-IFVGGIKEDTEEHYLRDYSE 121
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 210
YG + I + + + K++ + F+ F +++ ++ I +++ N +R LS
Sbjct: 122 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDS----VDKIVIRKYHTVNDHNCVRKALSK 177
Query: 211 P-MPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHF---NRANFQRGRGF--YQH 264
M + + G SG G+G S ++ Y G G G F + +NF G + + +
Sbjct: 178 QEMASASSSQRGRSGSGN-GYGRSSSYDSYNNGGG--GGSFGGGSGSNFGGGGSYNDFSN 234
Query: 265 GRNHSSRMG 273
N SS G
Sbjct: 235 YNNQSSNFG 243
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 152 (58.6 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 62/243 (25%), Positives = 107/243 (44%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS--C 84
SE LF+G +C+ +E+++ + +G + + ++ D + SRGF FV+FS
Sbjct: 17 SEQFRKLFIGGLCSETKEESLRNYYQQWGK--LTDCVVIRDPSSQR-SRGFGFVIFSSVA 73
Query: 85 HVDA-MAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
VDA MAA +P + G + +V E +P + K +F+ G+ E
Sbjct: 74 EVDAAMAA-----RPHSIDGRVVASKRVVPREESGKPGACVTT--KKLFVGGIKEDTTER 126
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203
+RD + YG + I + R + ++ +GF+ F H+ + + +G+ +
Sbjct: 127 HLRDYFERYGTIDAIEIIRQ--SGRKTAFGFVTFDDHDPVDKIV--LQKYHTINGHH-AQ 181
Query: 204 LRARLSNP-MPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFY 262
L LS M + Q+ + G G +G G + G G G G R NF+ G Y
Sbjct: 182 LEKALSRQGMQEVQSSRRGR--GRHVGFGDIPSGGGGGGGGGNFGAGPGR-NFRGGSEGY 238
Query: 263 QHG 265
G
Sbjct: 239 ARG 241
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 132 (51.5 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 35/131 (26%), Positives = 62/131 (47%)
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201
E + YG + +V+ ++ T + + +GF+ F + A + A+N K DG +
Sbjct: 19 EQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV-DGR-Q 76
Query: 202 VKLRARLSNPMPKTQAVKGGMSGG---FRIGHGSSRTFSRYGRGSGRAGHHFN-RANFQR 257
+++ + +++ +GG +GG FR G G R FSR G G G F+ R+
Sbjct: 77 IRVDQAGKSSENRSRGYRGGSTGGRGFFRGGRGRGRGFSRGGGDRGYGGSRFDSRSGGYN 136
Query: 258 G-RGFYQHGRN 267
G R +Y R+
Sbjct: 137 GSRDYYNSSRS 147
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 132 (51.5 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 35/131 (26%), Positives = 62/131 (47%)
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201
E + YG + +V+ ++ T + + +GF+ F + A + A+N K DG +
Sbjct: 19 EQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV-DGR-Q 76
Query: 202 VKLRARLSNPMPKTQAVKGGMSGG---FRIGHGSSRTFSRYGRGSGRAGHHFN-RANFQR 257
+++ + +++ +GG +GG FR G G R FSR G G G F+ R+
Sbjct: 77 IRVDQAGKSSENRSRGYRGGSTGGRGFFRGGRGRGRGFSRGGGDRGYGGSRFDSRSGGYN 136
Query: 258 G-RGFYQHGRN 267
G R +Y R+
Sbjct: 137 GSRDYYNSSRS 147
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 151 (58.2 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 62/256 (24%), Positives = 110/256 (42%)
Query: 23 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 82
G +E LF+G++ + T+E++ + +G + + L+ D + SR F F+ F
Sbjct: 13 GKRENEQFCKLFIGDLSSETTEESLWNYYRQWGY--LTDCVLIRDPASQK-SRRFGFITF 69
Query: 83 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA--HVKTVFLDGVPPHW 140
S + AA +P + G + V A P RE ++ A VK +F+ G+
Sbjct: 70 SSMAELDAAMAA--RPHFIDG---KMVMPKRAVP-REDHGKLGALITVKKLFVGGITEDM 123
Query: 141 KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 200
KE+ +RD + YG + I + + + K++ +GFI F H+ + + +G+
Sbjct: 124 KEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKIV--LQKNHTINGH- 180
Query: 201 KVKLRARLSNP-MPKTQAVKGGMSGGFRIG--HGSSRTFSRYGRGSGRAGHHFNRANFQR 257
+ ++R LS + Q ++ G +G HG G G GR + R
Sbjct: 181 RAEVRKALSRQERQEGQHLRSRGEGDVGLGYFHGVG---GNVGAGRGR-NFRGGAGGYGR 236
Query: 258 GRGFYQHGRNHSSRMG 273
GR F + R G
Sbjct: 237 GRQFGDGSHGYGGRAG 252
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 150 (57.9 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 58/258 (22%), Positives = 106/258 (41%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ + AA
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDAAM 72
Query: 93 KRL-QKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 73 NTTPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQ 127
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAINNKEFSDGNSKVKLRAR 207
YG + I + + + K++ + F+ F H++ + + + + K
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMA 187
Query: 208 LSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGH--HFNRANFQ-RGRGFYQH 264
++ + + G GG G G + F R G SGR G + G G+
Sbjct: 188 SASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGF 247
Query: 265 GRNHSSRMGPTEY-DFDN 281
G + S+ G Y DF N
Sbjct: 248 GNDGSNFGGGGSYNDFGN 265
>TAIR|locus:2083248 [details] [associations]
symbol:AT3G52660 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 eggNOG:NOG258596
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 EMBL:AL353912
KO:K13161 HOGENOM:HOG000243749 ProtClustDB:CLSN2698006
EMBL:BT029158 EMBL:AK176325 EMBL:AK176862 IPI:IPI00534328
PIR:T49019 RefSeq:NP_001030849.1 RefSeq:NP_190834.1
UniGene:At.48763 ProteinModelPortal:Q9LXJ8 SMR:Q9LXJ8 PaxDb:Q9LXJ8
PRIDE:Q9LXJ8 EnsemblPlants:AT3G52660.1 EnsemblPlants:AT3G52660.2
GeneID:824432 KEGG:ath:AT3G52660 TAIR:At3g52660 InParanoid:Q9LXJ8
OMA:HDSMESE PhylomeDB:Q9LXJ8 ArrayExpress:Q9LXJ8
Genevestigator:Q9LXJ8 Uniprot:Q9LXJ8
Length = 471
Score = 152 (58.6 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 41/182 (22%), Positives = 85/182 (46%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GKR + ++ LF+GN+ W + IK+ G GV+ + L + Q+ G +RGFA
Sbjct: 160 GKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIG-PGVQIVELPKEPQNMGRNRGFA 218
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA-HVKTVFLDGVP 137
F+ + H A A Y + + + F + V++AE + A VK +++ +P
Sbjct: 219 FIEYYNH--ACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKALYIKNLP 276
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
+ +++ + +G ++++V+ + YGF+ ++ + + + E D
Sbjct: 277 RDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEI-D 335
Query: 198 GN 199
G+
Sbjct: 336 GH 337
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 134 (52.2 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 37/147 (25%), Positives = 64/147 (43%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ E + YG + +V+ ++ T + + +GF+ F + A + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 191 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGG---FRIGHGSSRTFSRYGRGSGRAG 247
N K +V + S+ +++ +GG +GG FR G G R FSR G G G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGG 125
Query: 248 HHF-NRANFQRGRGFYQHGRNHSSRMG 273
F +R+ G Y R+ G
Sbjct: 126 SRFESRSGGYGGSRDYYSSRSQGGGYG 152
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 151 (58.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 64/265 (24%), Positives = 120/265 (45%)
Query: 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDA 88
D LF+G I +E ++ +YG + VE + ++ D + G +RGF F++F+ D
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYG-DVVEAV-IMRD-RATGRARGFGFIVFA---DP 57
Query: 89 MAAYKRLQKPDVVFGHPERTVKVAFAEPL-------REPDP-EIMAHV-------KTVFL 133
+ + + ++ G RTV+ A P R P +M+ V K +F+
Sbjct: 58 CVSERVIMDKHIIDG---RTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFV 114
Query: 134 DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
G+P E + ++ +G + +V+ + +T + + +GFI F + +A ++ + +K
Sbjct: 115 GGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDA----VDRVLHK 170
Query: 194 EFSDGNSK-VKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR 252
F + N K V+++ + + ++ ++ G G GS+R A +FN
Sbjct: 171 TFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRM---------PANSYFN- 220
Query: 253 ANFQRGRGFYQH----GRNHSSRMG 273
NF G GFY GR S +G
Sbjct: 221 -NFAPGPGFYNSLGPVGRRFSPVIG 244
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 149 (57.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 73/260 (28%), Positives = 109/260 (41%)
Query: 23 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
G P E LF+G + T +++++ + G + + ++ D Q + SRGF FV
Sbjct: 26 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKRGT--LTDCVVMRDPQTKH-SRGFGFV 82
Query: 81 MFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
SC VDA A R K D P+R V E +P +M VK +F+ G+
Sbjct: 83 TSSCVEEVDA-AMCARPHKVDGRVVEPKRAVS---REDSVKPGAHLM--VKKIFVGGIKE 136
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198
+E +RD + YG + R KR + F+ F + V I + +
Sbjct: 137 DTEEYNLRDYFEKYGKT-ETIEGRQAEWEKR-GFAFVTFDDQDT-VDKIVVQKHHTINGH 193
Query: 199 NSKVKLRARLSNPMP--KTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF- 255
N +VK RA MP +Q +GG S F +G G + R G G G G +
Sbjct: 194 NCEVK-RALSKQEMPCAGSQRGRGGGSSNF-MGRGGNFG-GREGYGGGGGGSRGSYGGSG 250
Query: 256 QRGRGFYQHGRNHSSRMGPT 275
R GF G N+ GP+
Sbjct: 251 DRYHGFGGDGGNYGG--GPS 268
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 149 (57.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 73/260 (28%), Positives = 109/260 (41%)
Query: 23 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
G P E LF+G + T +++++ + G + + ++ D Q + SRGF FV
Sbjct: 26 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKRGT--LTDCVVMRDPQTKH-SRGFGFV 82
Query: 81 MFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
SC VDA A R K D P+R V E +P +M VK +F+ G+
Sbjct: 83 TSSCVEEVDA-AMCARPHKVDGRVVEPKRAVS---REDSVKPGAHLM--VKKIFVGGIKE 136
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198
+E +RD + YG + R KR + F+ F + V I + +
Sbjct: 137 DTEEYNLRDYFEKYGKT-ETIEGRQAEWEKR-GFAFVTFDDQDT-VDKIVVQKHHTINGH 193
Query: 199 NSKVKLRARLSNPMP--KTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF- 255
N +VK RA MP +Q +GG S F +G G + R G G G G +
Sbjct: 194 NCEVK-RALSKQEMPCAGSQRGRGGGSSNF-MGRGGNFG-GREGYGGGGGGSRGSYGGSG 250
Query: 256 QRGRGFYQHGRNHSSRMGPT 275
R GF G N+ GP+
Sbjct: 251 DRYHGFGGDGGNYGG--GPS 268
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 128 (50.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 39/157 (24%), Positives = 76/157 (48%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ + E + D + +G + +V+ ++ T + + +GFI F+ E A + A+
Sbjct: 8 LFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAM 67
Query: 191 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGR-AGHH 249
N + DG + R+ + + +GG G HG R++SR G G +G +
Sbjct: 68 NGESL-DGR-----QIRVDHAGKSARGTRGGAFGA----HGRGRSYSRGGGDQGYGSGRY 117
Query: 250 FNR-ANFQRGRGF-YQHGRNHSSRMGPTEYDFDNRYT 284
+R + G G+ Y +GR+ G ++ +D RY+
Sbjct: 118 DSRPGGYGYGYGYGYGYGRSRDYG-GRSQGGYD-RYS 152
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 128 (50.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 40/155 (25%), Positives = 72/155 (46%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ + E + D +G + +V+ ++ T + + +GFI F+ E A + A+
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 191 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHF 250
N + DG + R+ + + +GG GF HG R++SR G G G+
Sbjct: 68 NGESL-DGR-----QIRVDHAGKSARGTRGG---GFG-AHGRGRSYSR---GGGDQGYGS 114
Query: 251 NRANFQRGRGF-YQHGRNHSSRMGPTEYDFDNRYT 284
R R G+ Y +GR+ G + +D RY+
Sbjct: 115 GRYYDSRPGGYGYGYGRSRDYN-GRNQGGYD-RYS 147
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 128 (50.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 44/161 (27%), Positives = 68/161 (42%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ E + YG V +V+ ++ + + + +GF+ F E A + A+
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 191 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGG---FRIGHGSSRTFSR-YGRGSGRA 246
N K +V + SN + +GG SGG FR G G R YG GS R
Sbjct: 68 NGKSVDGRQIRVDQAGKSSND--RRGGYRGGSSGGRGFFRGGRGRGGGGDRGYG-GSSRF 124
Query: 247 GHHFNRANFQRGRGFYQHGRNHSS---RMGPTEYDFDNRYT 284
+ R +Y GR+H S R G + D + YT
Sbjct: 125 ENRSGGYQSSGSRDYY--GRSHGSYGDRSGGSYRDSYDSYT 163
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 142 (55.0 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 51/207 (24%), Positives = 93/207 (44%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 35 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 90
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 91 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 145
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 210
YG + I + + + K++ + F+ F H++ + I +G++ ++R LS
Sbjct: 146 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV--IQKYHTVNGHN-CEVRKALSK 202
Query: 211 P-MPKTQAVKGGMSGGFRIGHGSSRTF 236
M + + G SG G G F
Sbjct: 203 QEMASASSSQRGRSGSGNFGGGRGGGF 229
>UNIPROTKB|F1PQB0 [details] [associations]
symbol:HNRNPA1L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03003034 Ensembl:ENSCAFT00000027199 Uniprot:F1PQB0
Length = 314
Score = 146 (56.5 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 63/264 (23%), Positives = 112/264 (42%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
E LF+ + T E+++ + +G + + ++ D + SRGF + VD
Sbjct: 11 EQLQKLFIRGLSFEITDESLRTHFEQWGT--LTDYVVMRD-PNTKCSRGFGAME---EVD 64
Query: 88 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRD 147
A A R K P+R V E P P ++ VK +F+ G+ +E+ +RD
Sbjct: 65 A-AMNSRPCKVGRRVLEPKRAVS---QED--SPRPGVLLTVKKIFVGGIKEDTEEHHLRD 118
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 207
+ YG + I + + K++ + F+ F H++ + I ++G+++V +
Sbjct: 119 YFEQYGKIEVIESMTDRGSGKKRGFAFVTFDDHDSVDKIV--IQKYHAANGHNRVVRKTL 176
Query: 208 LSNPMPKTQAVKGGMSGGFRIGHGSSRTFS---RYGRG---SGRAGHHFNRA---NFQRG 258
M + + G SG G G F +GRG SG+ G +R + G
Sbjct: 177 WKQEMASASSSQRGRSGSGNFGGGCGGGFGGNDNFGRGGNFSGQGGFAGSRGGGGSGGSG 236
Query: 259 RGFYQHGRNHSSRMGPTEY-DFDN 281
G+ + G + S+ G Y DF N
Sbjct: 237 DGYNEFGNDGSNFGGGRSYNDFGN 260
Score = 126 (49.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 40/167 (23%), Positives = 69/167 (41%)
Query: 120 PDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 179
P P ++ VK +F+ G+ +E+ +RD + YG + I + + K++ + F+ F
Sbjct: 91 PRPGVLLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIESMTDRGSGKKRGFAFVTFDD 150
Query: 180 HEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRY 239
H++ + I ++G+++V + M + + G SG G G
Sbjct: 151 HDSVDKIV--IQKYHAANGHNRVVRKTLWKQEMASASSSQRGRSGSGNFGGGC------- 201
Query: 240 GRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEYDFDNRYTEF 286
G G G+ NF RG F G SR G + Y EF
Sbjct: 202 --GGGFGGND----NFGRGGNFSGQGGFAGSRGGGGSGGSGDGYNEF 242
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 146 (56.5 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 70/259 (27%), Positives = 118/259 (45%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +FVG + +W + K+ LKDY + E ++ + + G SRGF F++F
Sbjct: 66 EDAGKMFVGGL--SW--DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK--- 118
Query: 87 DAMAAYKRL-QKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK-ENQ 144
DA + K L QK + G R + A +++ DP VK +F+ G+ P E +
Sbjct: 119 DAASVEKVLDQKEHRLDG---RVIDPKKAMAMKK-DP-----VKKIFVGGLNPESPTEEK 169
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204
IR+ +G++ I L + KR+ + FI F E + + K+F + K
Sbjct: 170 IREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEP----VKKVLEKKFHTVSGS-KC 224
Query: 205 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA-NFQRGRG-FY 262
+++ P Q + G SGG G+ +R RGSG G ++ ++ +G G ++
Sbjct: 225 EIKVAQPKEVYQQQQYG-SGG----RGNR---NRGNRGSGGGGGGGGQSQSWNQGYGNYW 276
Query: 263 QHGRNHSSRMGPTE--YDF 279
G + GP YD+
Sbjct: 277 NQGYGYQQGYGPGYGGYDY 295
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 148 (57.2 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 66/233 (28%), Positives = 96/233 (41%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
SED TLFV N+ T E + G + + I EGL+ +AFV FS H
Sbjct: 36 SEDPRTLFVANLDPAITDEFLATLFNQIGAV------MKAKIIFEGLNDPYAFVEFSDHN 89
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-----PEIMAHVKTVFLDGVPPHWK 141
A A + +++ E V AF EP REP PE H VF+ +
Sbjct: 90 QATLALQSHNGRELL--EKEMHVTWAF-EP-REPGENRSKPETSRHFH-VFVGDLCSEID 144
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201
++R+ +G+V + R+ +T K K YGF+ + E A I+ +N +
Sbjct: 145 STKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLG----R 200
Query: 202 VKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH-FNRA 253
+R + P +GG G R G G R RY S + FN+A
Sbjct: 201 RTIRTNWATRKPDEDGERGGDRGDRRGGGGGGR--DRYHNQSEKTYDEIFNQA 251
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 151 (58.2 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 61/212 (28%), Positives = 93/212 (43%)
Query: 69 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH- 127
Q+ G +G+AFV F D+ A + D+ G R++++ +++ RE +
Sbjct: 498 QNNGRPKGYAFVEFENVEDSKEALENCNNTDIE-G---RSIRLEYSQNDRERGGGGRGNS 553
Query: 128 --VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 185
KT+F+ G+ + ++D G I +A + T K +GF+DF + A
Sbjct: 554 GPTKTLFVKGLSDDTTDQTLKDSFDG---AIAARIATDRDTGSSKGFGFVDFDNEQDCKA 610
Query: 186 CINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYG---RG 242
A+++ E DGN KV L PK + +GG GG R G G R R G RG
Sbjct: 611 AKEAMDDGEI-DGN-KVTL----DYAKPKGEGGRGGFGGG-RGGFGG-RGGGRGGFGGRG 662
Query: 243 SGRAGHHFNRANFQRGRGF-YQHGRNHSSRMG 273
G G F RG G ++ GR R G
Sbjct: 663 GGGRGGGFRGGRGGRGGGGGFRGGRGGGGRGG 694
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 126 (49.4 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 36/147 (24%), Positives = 63/147 (42%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ E + YG + +V+ ++ T + + +GF+ F + A + A+
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 191 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGG---FRIGHGSSRTFSRYGRGSGRAG 247
N K +V + S+ +++ +GG +GG FR G R FSR G G G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAGGRGFFRGGRSRGRGFSRGGGDRGYGG 125
Query: 248 HHF-NRANFQRGRGFYQHGRNHSSRMG 273
F +R+ G Y R+ G
Sbjct: 126 GRFESRSGGYGGSRDYYASRSQGGSYG 152
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 126 (49.4 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 36/147 (24%), Positives = 63/147 (42%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ E + YG + +V+ ++ T + + +GF+ F + A + A+
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 191 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGG---FRIGHGSSRTFSRYGRGSGRAG 247
N K +V + S+ +++ +GG +GG FR G R FSR G G G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAGGRGFFRGGRSRGRGFSRGGGDRGYGG 125
Query: 248 HHF-NRANFQRGRGFYQHGRNHSSRMG 273
F +R+ G Y R+ G
Sbjct: 126 GRFESRSGGYGGSRDYYASRSQGGSYG 152
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 126 (49.4 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 36/147 (24%), Positives = 63/147 (42%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ E + YG + +V+ ++ T + + +GF+ F + A + A+
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 191 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGG---FRIGHGSSRTFSRYGRGSGRAG 247
N K +V + S+ +++ +GG +GG FR G R FSR G G G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAGGRGFFRGGRSRGRGFSRGGGDRGYGG 125
Query: 248 HHF-NRANFQRGRGFYQHGRNHSSRMG 273
F +R+ G Y R+ G
Sbjct: 126 GRFESRSGGYGGSRDYYASRSQGGSYG 152
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 126 (49.4 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 38/154 (24%), Positives = 72/154 (46%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ + E + D +G + +V+ ++ T + + +GFI F+ E A + A+
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 191 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHF 250
N + DG + R+ + + +GG G HG R++SR G G G+
Sbjct: 68 NGESL-DGR-----QIRVDHAGKSARGTRGGAFGA----HGRGRSYSR---GGGDQGYGS 114
Query: 251 NRANFQRGRGFYQHGRNHSSRMGPTEYDFDNRYT 284
R + + G Y +GR+ G ++ +D RY+
Sbjct: 115 GRYDSRPGGYGYGYGRSRDYS-GRSQGGYD-RYS 146
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 137 (53.3 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 37/143 (25%), Positives = 65/143 (45%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ E + YG + +V+ ++ T + + +GF+ F + A + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 191 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGG---FRIGHGSSRTFSRYGRGSGRAG 247
N K +V + S+ +++ +GG +GG FR G G R FSR G G G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGG 125
Query: 248 HHF-NRANFQRGRGFYQHGRNHS 269
+ F +R+ G Y R+ S
Sbjct: 126 NRFESRSGGYGGSRDYYSSRSQS 148
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 147 (56.8 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 64/249 (25%), Positives = 108/249 (43%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV +S VDA A
Sbjct: 40 LFIGGLSFETTDESLRAHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYSSVGEVDA-A 95
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ E +R+
Sbjct: 96 MDARPHKVDGRAVEPKRAVS-------REDSSKPGAHSTVKKMFVGGIKEDTDEEHLREY 148
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 208
+G + + + ++ KR+ + FI F H+A + I +G++ ++R L
Sbjct: 149 FGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIV--IQKYHTVNGHN-CEVRKAL 205
Query: 209 SNPMPKTQAV--KGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH--FNRANFQRGRGFYQH 264
S ++ +GG GG G G+ F R G G G G+ + + G G Y
Sbjct: 206 SREEMNRVSMNSRGGRGGGGGSGGGN---FGRGGGGGGGGGYGGGYGGGGGRGGGGGYGG 262
Query: 265 GRNHSSRMG 273
G ++ G
Sbjct: 263 GDGYNGYGG 271
>UNIPROTKB|F5H6R6 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048255
EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI01012829
ProteinModelPortal:F5H6R6 SMR:F5H6R6 Ensembl:ENST00000541060
ArrayExpress:F5H6R6 Bgee:F5H6R6 Uniprot:F5H6R6
Length = 201
Score = 136 (52.9 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 48/176 (27%), Positives = 83/176 (47%)
Query: 115 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 174
+P R + VK +F+ G+ P E +IR+ G+G+V I L + T KR+ + F
Sbjct: 14 DPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCF 73
Query: 175 IDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSS 233
I F E + I K++ + G SK +++ +S + Q + G GGF G +
Sbjct: 74 ITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ-QWGSRGGFA---GRA 125
Query: 234 RTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQHGRNHSSRMGPTEYDFDNRYTEFH 287
R GRG G + ++N+ +N+ +G+ +G N G YD+ Y ++
Sbjct: 126 R-----GRGGGPS-QNWNQGYSNYWN-QGYGNYGYNSQGYGGYGGYDYTG-YNNYY 173
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 145 (56.1 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 61/243 (25%), Positives = 106/243 (43%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS--C 84
SE LF+G +C+ +E+++ + +G + + ++ D + SRGF FV+FS
Sbjct: 17 SEQFRKLFIGGLCSETKEESLRNYYQQWGK--LTDCVVIRDPSSQR-SRGFGFVIFSSVA 73
Query: 85 HVDA-MAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
VDA MAA +P + G + +V E +P + K +F+ G+ E
Sbjct: 74 EVDAAMAA-----RPHSIDGRVVASKRVVPREESGKPGACVTT--KKLFVGGIKEDTTER 126
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203
+RD + YG + I + R + ++ +GF+ F H+ + + +G+ +
Sbjct: 127 HLRDYFERYGTIDAIEIIRQ--SGRKTAFGFVTFDDHDPVDKIV--LQKYHTINGHH-AQ 181
Query: 204 LRARLSNP-MPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFY 262
L LS M + Q+ + G +G G + G G G G R NF+ G Y
Sbjct: 182 LEKALSRQGMQEVQSSR--RRRGRHVGFGDIPSGGGGGGGGGNFGAGPGR-NFRGGSEGY 238
Query: 263 QHG 265
G
Sbjct: 239 ARG 241
>UNIPROTKB|F1RVC9 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 EMBL:CU627987
Ensembl:ENSSSCT00000010129 OMA:DASSHGW Uniprot:F1RVC9
Length = 202
Score = 136 (52.9 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 50/190 (26%), Positives = 86/190 (45%)
Query: 101 VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVL 160
V E + +P R + VK +F+ G+ P E +IR+ G+G+V I L
Sbjct: 1 VMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 60
Query: 161 ARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSNPMPKTQAVK 219
+ T KR+ + FI F E + I K++ + G SK +++ +S + Q +
Sbjct: 61 PMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ-Q 115
Query: 220 GGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQHGRNHSSRMGPTEY 277
G GGF G +R GRG G + ++N+ +N+ +G+ +G N G Y
Sbjct: 116 WGSRGGFA---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGNYGYNSPGYGGYGGY 165
Query: 278 DFDNRYTEFH 287
D+ Y ++
Sbjct: 166 DYTG-YNNYY 174
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 144 (55.7 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 69/270 (25%), Positives = 120/270 (44%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +FVG + +W + K+ LKDY + E ++ + + G SRGF F++F
Sbjct: 71 EDAGKMFVGGL--SW--DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK--- 123
Query: 87 DAMAAYKRL-QKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
D+ + K L QK + G R + A +++ DP VK +F+ G+ P E +I
Sbjct: 124 DSSSVEKVLDQKEHRLDG---RVIDPKKAMAMKK-DP-----VKKIFVGGLNPEATEEKI 174
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKL 204
R+ +G++ I L + KR+ + FI F + + + K+F SK ++
Sbjct: 175 REYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDP----VKKVLEKKFHTVSGSKCEI 230
Query: 205 RARLSNPMPKTQAVKGGMSG----GFR-IGHGSSRTFSR-YG----RGSG-RAGHHFNRA 253
+ + + Q G G G R G G S+++++ YG +G G + G+
Sbjct: 231 KVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYG 290
Query: 254 NFQRGR-GFYQHGRNHSSRMGPTEYDFDNR 282
+ G+Y +G + G T Y R
Sbjct: 291 GYDYSPYGYYGYGPGYDYSQGSTNYGKSQR 320
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 144 (55.7 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 69/270 (25%), Positives = 120/270 (44%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +FVG + +W + K+ LKDY + E ++ + + G SRGF F++F
Sbjct: 72 EDAGKMFVGGL--SW--DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK--- 124
Query: 87 DAMAAYKRL-QKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
D+ + K L QK + G R + A +++ DP VK +F+ G+ P E +I
Sbjct: 125 DSSSVEKVLDQKEHRLDG---RVIDPKKAMAMKK-DP-----VKKIFVGGLNPEATEEKI 175
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKL 204
R+ +G++ I L + KR+ + FI F + + + K+F SK ++
Sbjct: 176 REYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDP----VKKVLEKKFHTVSGSKCEI 231
Query: 205 RARLSNPMPKTQAVKGGMSG----GFR-IGHGSSRTFSR-YG----RGSG-RAGHHFNRA 253
+ + + Q G G G R G G S+++++ YG +G G + G+
Sbjct: 232 KVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYG 291
Query: 254 NFQRGR-GFYQHGRNHSSRMGPTEYDFDNR 282
+ G+Y +G + G T Y R
Sbjct: 292 GYDYSPYGYYGYGPGYDYSQGSTNYGKSQR 321
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 141 (54.7 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 67/243 (27%), Positives = 113/243 (46%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVE-G-VENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 90
+FVG + +W + K+ LKDY + G V + + D + G SRGF F++F + +
Sbjct: 2 MFVGGL--SW--DTSKKDLKDYFTKFGEVTDCTIKMD-PNTGRSRGFGFILFK---EPGS 53
Query: 91 AYKRL-QKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQI 149
K L QK + G R + A +++ DP VK +F+ G+ P E +IR+
Sbjct: 54 VEKVLEQKEHRLDG---RLIDPKKAMAMKK-DP-----VKKIFVGGLNPEATEEKIREYF 104
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+G++ I L + T KR+ + FI F + + + K+F + + K +++
Sbjct: 105 GEFGEIEAIELPMDPKTNKRRGFVFITFKEEDP----VKKVLEKKFHNVSGS-KCEIKVA 159
Query: 210 NPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRA-------GHHFNRANFQRGRGFY 262
P Q + SGG G GS R GRG ++ G+++N+ +G G Y
Sbjct: 160 QPKEVYQQQQFS-SGG---GRGSYGGRGRGGRGGAQSQNWNQGYGNYWNQGYGNQGYG-Y 214
Query: 263 QHG 265
Q G
Sbjct: 215 QQG 217
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 146 (56.5 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 65/264 (24%), Positives = 110/264 (41%)
Query: 20 KRCGTAPSEDNDTLFVGNICNTWTKE--AIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
K+ T S+ TLFVGN+ +W + + ++ K G V + +++D + G S+GF
Sbjct: 228 KKTKTEESDKPSTLFVGNL--SWNVDDAMLAEEFKFCGT--VTSARVITD-RESGRSKGF 282
Query: 78 AFVMFSCHVDAMAAYKRLQ---------KPDVVFGHPERTVKVAFAEPLREPDPEIMAHV 128
+V F+ +A A+ Q K D G + A A + D +
Sbjct: 283 GYVDFATPEEAEKAHGEKQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDT-VSPES 341
Query: 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188
T+F+ +P E+ + +V + L + +RK +G++ F++ E A +
Sbjct: 342 DTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFE 401
Query: 189 AINNKEFSDGNSKVKLRARLSNPMPKTQ----AVKGGMSGGFRIGHGSSRTFSRYGR--G 242
+N + + N ++ S P P + +GG GGF G G R +G G
Sbjct: 402 QLNGQSINGRNCRLDY----STPRPPREDGGFGGRGGGRGGFG-GRGGGRGGGGFGGRGG 456
Query: 243 SGRAGHHFN-RANF--QRGRGFYQ 263
GR G R F RG G +Q
Sbjct: 457 GGRGGGRGGGRGGFGGSRGGGGFQ 480
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 142 (55.0 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 72/262 (27%), Positives = 113/262 (43%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--H 85
E LF+G + T E+++ ++G + ++ D + SRGF FV ++
Sbjct: 11 EQLQKLFIGGLSFETTDESLRSHF-EWGT--LTGCVVMRD-PNTKRSRGFGFVTYATVEE 66
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKEN 143
VDA A R K D P+R V RE + AH VK +F+ G+ + E+
Sbjct: 67 VDA-AMNARPHKVDGRVVEPKRAVS-------REDSQTLDAHLTVKKIFVGGIKEN-TED 117
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI---NAIN--NKEFSDG 198
+RD + YG + I + + + K++ + F+ F H++ I + +N N E
Sbjct: 118 HLRDYFE-YGKIEVIEIMTDRGSGKKRGFTFVTFDDHDSVDKIIQKYHTVNGHNCEVRKA 176
Query: 199 NSKVKLRARLSNPMPKTQAVKGGMSGGF--RIGHGSSRTFS-RYGRGSGRAGHHFNRANF 255
SK ++ + S+ GG GG R G SR G G G +G + +NF
Sbjct: 177 LSKQEMASASSSQSLSGSGNFGGGCGGNSGRGGFSGSRGGGGNGGSGDGYSGFGNDGSNF 236
Query: 256 QRGRGFYQH-G--RNHSSRMGP 274
G G Y G N SS GP
Sbjct: 237 --GGGSYNDFGTYNNQSSNFGP 256
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 123 (48.4 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 36/148 (24%), Positives = 66/148 (44%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ + E + D +G + +V+ ++ T + + +GFI F+ E A + A+
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67
Query: 191 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHF 250
N + DG + R+ + + +GG G HG R++SR G G G+
Sbjct: 68 NGESL-DGR-----QIRVDHAGKSARGTRGGAFGA----HGRGRSYSR---GGGDQGYGS 114
Query: 251 NRANFQRGRGFYQHGRNHSSRMGPTEYD 278
R + + G Y +GR+ YD
Sbjct: 115 GRYDSRPGGYGYGYGRSRDYSGSQGGYD 142
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 142 (55.0 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 60/234 (25%), Positives = 103/234 (44%)
Query: 33 LFVGNICNTWTKEA-IKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 91
LF+G + N T EA +++ YG + + +V + Q + SR F FV +S +A AA
Sbjct: 30 LFIGGL-NVQTTEAGLREHFAAYGT--LTDCVVVLNPQTKR-SRCFGFVTYSAVEEADAA 85
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
P V G+ + E +P A VK +F+ G+ E +
Sbjct: 86 MAA--SPHAVDGNSVELKRAVSREDSAKPGAH--AKVKKLFVGGLKGDVGEGDLVQHFSQ 141
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 211
+G V + + + + K++ +GF+ F H+AA A+ G+ +V+++ + P
Sbjct: 142 FGPVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA--AVVKFHPIQGH-RVEVKKAV--P 196
Query: 212 MPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHG 265
QA GG + R G G R GRG G +G+ + + G G+ +G
Sbjct: 197 KEDIQAGGGGSARPSRGGRGGGR-----GRGGGGSGNRDHNGLSKGGGGYNSYG 245
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 141 (54.7 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 41/184 (22%), Positives = 84/184 (45%)
Query: 23 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 82
G S D+ +++ N+ + +A+ +G + N N+ D +G SRG+ FV F
Sbjct: 105 GGNSSPDSGKIYIKNLERSIDNKAVYDTFSVFG--NILNCNVAKD--EDGNSRGYGFVHF 160
Query: 83 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKE 142
A AA ++K + + + ++ V F P R+ + E H K +++ + + E
Sbjct: 161 DSEEAARAA---IEKVNGMLCNNQKVHVVKFI-PRRDREQEKATHFKNLYVKNLSEEFTE 216
Query: 143 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202
+R+ + YG + L + R+ +GF+ + ++A+A + ++ K+ D
Sbjct: 217 QHLREMFEPYGRITSHKLMLDEEGRSRR-FGFVAYENPQSALAAVIGLHGKQLGDNKFLY 275
Query: 203 KLRA 206
RA
Sbjct: 276 VARA 279
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 142 (55.0 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 62/227 (27%), Positives = 106/227 (46%)
Query: 41 TWTKEAIKQKLKD-YGVEG-VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 98
+W E +++L+D +G G +E+IN+ +D Q G SRGFAF++F+ + +A + K
Sbjct: 64 SW--ETTEKELRDHFGKYGEIESINVKTDPQ-TGRSRGFAFIVFT-NTEA------IDKV 113
Query: 99 DVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRI 158
H + KV +P H K +F+ G+ + +I+ +G+++ +
Sbjct: 114 SAADEHIINSKKV-------DPKKAKARHGK-IFVGGLTTEISDEEIKTYFGQFGNIVEV 165
Query: 159 VLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAV 218
+ + ++RK + FI F + + + K + VK RA P P+ Q +
Sbjct: 166 EMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQK-IAGKEVDVK-RA---TPKPENQMM 220
Query: 219 KGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHG 265
GGM GG R G R YG GR G++ N+ + Q G Y G
Sbjct: 221 -GGMRGGPRGGMRGGR--GGYG---GRGGYN-NQWDGQGSYGGYGGG 260
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 141 (54.7 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 63/238 (26%), Positives = 108/238 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS--CHVD-AM 89
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS VD AM
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASKR-SRGFGFVTFSSMAEVDVAM 67
Query: 90 AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQI 149
AA +P + G + E +P + VK +F+ G+ +E+ +RD
Sbjct: 68 AA-----RPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYF 120
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + KR +GF+ F H+ + + +G++ ++R LS
Sbjct: 121 EEYGKIDTIEIITDRQSGKR-GFGFVTFDDHDPVDKIV--LQKYHTKNGHN-AEVRKALS 176
Query: 210 NPMPKTQAVKGGMSGGFR-IGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGR 266
+ Q V+ SG R + G SR G G G +G +NF+ G Y GR
Sbjct: 177 RQ--EMQEVQNSRSGRPRTLLFGDSR-----G-GGGNSGPGPG-SNFRGGSDGYGSGR 225
>UNIPROTKB|F1M6M1 [details] [associations]
symbol:F1M6M1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00563231
Ensembl:ENSRNOT00000040517 Uniprot:F1M6M1
Length = 253
Score = 138 (53.6 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 55/224 (24%), Positives = 97/224 (43%)
Query: 74 SRGFAFVMFSC-HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVF 132
SRGF FV +C V+ + A +P V G + E + PD + VK +F
Sbjct: 4 SRGFGFV--TCTSVEKVDATMNA-RPHKVDGRVVEPKRAMSREDSQRPDAHLT--VKKIF 58
Query: 133 LDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 192
+ + +E+ +RD + YG + I + + + K++ + F+ F H++ ++ I
Sbjct: 59 VGSIKEDTEEHHLRDYFEQYGKIELIEIMADRGSEKKRGFAFVTFDDHDS----VDKIVT 114
Query: 193 KEFS--DGNSKVKLRARLSNP-MPKTQAVKGGMSGGFRIGH-GSSRTFSRYGRGSGRAGH 248
+++ +G+ K ++R LS M + G +G R G+ G SR + G+ G G
Sbjct: 115 QKYHTVNGHHKCEVRKPLSKQEMASASFSQRGRNGS-RTGYPGGSRGYGSGGQDCGNQGS 173
Query: 249 HFNRA----NFQRGRGFYQHGRNHSSRMGPT-EY-DFDNRYTEF 286
+ + ++ G G G G Y DF N Y F
Sbjct: 174 GYGGSGSYDSYNNGGGGSSFGSGSRRNFGGGGSYSDFGN-YNNF 216
>RGD|1564416 [details] [associations]
symbol:RGD1564416 "similar to Heterogeneous nuclear
ribonucleoprotein A1 (Helix-destabilizing protein
(Topoisomerase-inhibitor suppressed)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1564416 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00388666 Ensembl:ENSRNOT00000037037 Uniprot:F1LZ88
Length = 314
Score = 140 (54.3 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 65/255 (25%), Positives = 104/255 (40%)
Query: 45 EAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMAAYKRLQKPDVVF 102
E + LK +E N ++ D + SRGF FV ++ VDA + + V
Sbjct: 24 ETTDESLKT--MENTSNFLVMRD-PNTKRSRGFGFVPYTTVEEVDATMNARPHKVGGRVV 80
Query: 103 GHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLAR 162
G P+R V + R P M K V + G+ +E+ +RD + YG I +
Sbjct: 81 G-PKR-VSCGMEKSQRPGAPLTM---KKVLVGGINEDTEEHHLRDYFEWYGKTEVIEIMT 135
Query: 163 NMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKLRARLSNPMPKTQ 216
+ + K++ + F+ F H++ + + +N N E SK + RA S+ + +
Sbjct: 136 DRGSVKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE-RASASSSQ-RGR 193
Query: 217 AVKGGMSGGFRIGHGSSRTFSRYGR--GSGRAGHHFNRANFQRG---RGFYQHGRNHSSR 271
+ G GG G GS+ F G G G G + G GF G N
Sbjct: 194 SGSGNFGGGRGGGFGSNDNFGSGGNFCGHGDFGGSHGGGGYGGGDGYNGFGNDGSNFGGG 253
Query: 272 MGPTEYDFDNRYTEF 286
++D DN +EF
Sbjct: 254 GNDNDFDNDNNRSEF 268
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 146 (56.5 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 41/170 (24%), Positives = 78/170 (45%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+F+ N+ +A+ +G + + + D G S+G+ FV + A A
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFG--NILSCKVAQD--ENGNSKGYGFVHYETDEAASQAI 206
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDP---EIMAHVKTVFLDGVPPHWKENQIRDQI 149
K + ++ E+ V V P ++ E+ A+ +++ + P +++ R
Sbjct: 207 KHVN--GMLLN--EKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLF 262
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 199
+ YGDV LAR+ T K + +GF++F++HE A + +N KEF N
Sbjct: 263 EKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQN 312
>FB|FBgn0035526 [details] [associations]
symbol:CG1316 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014296 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P11940 eggNOG:NOG145324
OMA:DIWVVKD GeneTree:ENSGT00680000100059 EMBL:BT001728
RefSeq:NP_647887.1 UniGene:Dm.14909 SMR:Q9VZE4 IntAct:Q9VZE4
MINT:MINT-906283 EnsemblMetazoa:FBtr0073233 GeneID:38526
KEGG:dme:Dmel_CG1316 UCSC:CG1316-RA FlyBase:FBgn0035526
InParanoid:Q9VZE4 OrthoDB:EOG4KKWJ8 GenomeRNAi:38526 NextBio:809099
Uniprot:Q9VZE4
Length = 470
Score = 143 (55.4 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 63/240 (26%), Positives = 112/240 (46%)
Query: 19 GKRCGTAPSEDNDT----LFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGL 73
G R G S D+D LF+ ICN T+E ++ YG +E+I +V D +H
Sbjct: 12 GGRGGQEYSNDDDPPMSRLFI--ICNKAHTEEDFREAFSPYGE--IEDIWVVKD-KHTQE 66
Query: 74 SRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA----EPLREPDPEIMAHVK 129
++G A+V FS DA A + + + G +RT+KV A + + + E +V+
Sbjct: 67 NKGIAYVKFSKTSDAAKAQEEMNGKTI--GKMDRTLKVLVAANRNQGSNKSENEQEKYVR 124
Query: 130 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST-HEAAVACIN 188
+ +P E IR++ +GDV + + + + K +G++ F+ + AAVA N
Sbjct: 125 LFIV--IPKTATEEDIREEFSQWGDVESVTIVKEKNNGNPKGFGYVRFTKFYYAAVAFEN 182
Query: 189 --AINNKEFSD--GNSKVKL----RARLSNPMPKTQAVKGGMS---GGFRIGHGSSRTFS 237
A F++ G+++ + R NP+ + +G + GG G G S +++
Sbjct: 183 CSAKYKAVFAEPKGSTRTQRDQYGRPSEDNPLYSSSG-RGNSNFNGGGSSSGGGGSNSYN 241
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 134 (52.2 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 41/152 (26%), Positives = 70/152 (46%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ E + YG + +V+ ++ T + + +GF+ F + A + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 191 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGG---FRIGHGSSRTFSRYGRGSGRAG 247
N K +V + S+ +++ +GG +GG FR G G R FSR G G G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAGGRGFFRGGRGRGRGFSR---GGGDRG 122
Query: 248 HHFNRANFQRGRGFYQHGRNH-SSRMGPTEYD 278
+ +R F+ G Y R++ SSR YD
Sbjct: 123 YGGSR--FESRSGGYGGSRDYYSSRSQGGGYD 152
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 136 (52.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 49/176 (27%), Positives = 82/176 (46%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
SE +++GNI T T E + + ++++G VE + ++ D ++ G SR F F
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHGA--VEKVQVMYD-KYSGRSRRFGFATMKSVE 128
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAE-PLRE-PDPEIMAHVKTVFLDGVPPHWKENQ 144
DA A ++L + V G R +KV E P+ PD ++ + F+D + N
Sbjct: 129 DANAVVEKLNG-NTVEG---REIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNL 184
Query: 145 IRDQIKGY--------GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 192
+ K G V+ ++R T+K +GF+ FS+ E A I A+NN
Sbjct: 185 AKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNN 240
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 142 (55.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 47/198 (23%), Positives = 96/198 (48%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD---IQHEGLSRGFAFVMFSCHVDAM 89
++VG+I ++ I+Q +G +++I++ D ++H +GFAFV + A
Sbjct: 95 VYVGSIYYELGEDTIRQAFAPFGP--IKSIDMSWDSVTLKH----KGFAFVEYEVPEAAQ 148
Query: 90 AAYKRLQKPDVVFGHPE----RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
A +++ V+ G R + A+P+ + E +++ V P ++ I
Sbjct: 149 LALEQMNS--VMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDI 206
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
+ + +G + LAR+ +T K K YGFI++ ++A ++++N F G +++
Sbjct: 207 KSVFEAFGRIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVSSMNL--FDLGGQYLRVG 264
Query: 206 ARLSNPMPK-TQAVKGGM 222
++ PMP T A GG+
Sbjct: 265 KAVTPPMPLLTPATPGGL 282
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 138 (53.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 62/267 (23%), Positives = 111/267 (41%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + ++ D + SRG F+M++ + AA
Sbjct: 16 LFIGGLSFETTEESLRSHFEQWGT--FTDCVVMRD-PNTKRSRGVGFLMYATVEEVDAAM 72
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
D P+R V E + P + VK +F+ G+ +E+ +RD + Y
Sbjct: 73 NARPHVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQY 127
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAINNK--EFSDGNSKVKLRA 206
G + I + + + K K + F+ F H++ + + +N E SK ++ +
Sbjct: 128 GKIEVIEIMTDRGSGK-KGFAFVTFDDHDSVDKIVIQKYHPVNGHSCEVRKALSKQEMAS 186
Query: 207 RLSNPMPKTQAVK--GGMSGGF----RIGHGSSRTFS--------RYGRGSGRAGHHFNR 252
S + + GG GGF G G R FS + G G G +G +N
Sbjct: 187 ASSTQRDLSGSGNFGGGRGGGFGGNDNFGGGRRRNFSGGGGFGGSQGGGGYGGSGDGYNG 246
Query: 253 -----ANFQRGRGFYQHGRNHSSRMGP 274
+NF G + G ++S GP
Sbjct: 247 FGNDGSNFGGGGSYNDFGNYNNSNFGP 273
>UNIPROTKB|F1M0H6 [details] [associations]
symbol:F1M0H6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00766574
Ensembl:ENSRNOT00000044621 Uniprot:F1M0H6
Length = 360
Score = 139 (54.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 67/251 (26%), Positives = 109/251 (43%)
Query: 20 KRCGTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
KR G P E LF+G + +++++ K G + + ++ D Q + SRGF
Sbjct: 20 KR-GADPKEPEQLRKLFIGGLSFETADDSLREHFKKRGT--LTDCVVMRDPQTK-CSRGF 75
Query: 78 AFVMFSC--HVDA-MAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVF 132
FV +SC VDA M A+ L K D P++ V RE ++ AH VK F
Sbjct: 76 GFVTYSCVEEVDAAMCAW--LHKVDGRVVEPKKAVS-------REDSVKLGAHLMVKKTF 126
Query: 133 LDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 192
+ G+ +E ++D + YG + + S R+ + F F H+ + +
Sbjct: 127 VGGIKEDTEEYNLKDYFEKYGKIETEGMENRQSG--RRGFAFAIFGDHDVDKIVVQ--KH 182
Query: 193 KEFSDGNSKVKLR-ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFN 251
+ N +VK ++L +Q +GG G F +G G + + G G G G +
Sbjct: 183 HTINGHNCEVKKALSKLEMHSAGSQRGRGGGYGNF-MGCGGNFG-GKGGYGGGGGG---S 237
Query: 252 RANFQRGRGFY 262
R +F G G Y
Sbjct: 238 RGSFGGGDGGY 248
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 137 (53.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 37/143 (25%), Positives = 65/143 (45%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ E + YG + +V+ ++ T + + +GF+ F + A + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 191 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGG---FRIGHGSSRTFSRYGRGSGRAG 247
N K +V + S+ +++ +GG +GG FR G G R FSR G G G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGG 125
Query: 248 HHF-NRANFQRGRGFYQHGRNHS 269
+ F +R+ G Y R+ S
Sbjct: 126 NRFESRSGGYGGSRDYYSSRSQS 148
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 129 (50.5 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 34/130 (26%), Positives = 61/130 (46%)
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201
E + YG + +V+ ++ T + + +GF+ F + A + A+N K DG +
Sbjct: 19 EQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV-DGR-Q 76
Query: 202 VKLRARLSNPMPKTQAVKGGMSGG---FRIGHGSSRTFSRYGRGSGRAGHHFN-RANFQR 257
+++ + +++ +GG +GG FR G G R FSR G G G F+ R+
Sbjct: 77 IRVDQAGKSSENRSRGYRGGSTGGRGFFRGGRGRGRGFSRGGGDRGYGGSRFDSRSGGYN 136
Query: 258 GRGFYQHGRN 267
G Y + R+
Sbjct: 137 GSRDYYNSRS 146
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 118 (46.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 20/74 (27%), Positives = 43/74 (58%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
V++ + P ++ +R+ GYG+V+ ++ R+ T + + +GF+ +S+H A A ++ +
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 191 NNKEFSDGNSKVKL 204
+ KE + VKL
Sbjct: 65 DGKELNGRRVSVKL 78
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 139 (54.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 58/228 (25%), Positives = 103/228 (45%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
+E+ T+FVG + + E +K++ + G GV ++ + + SRG+ +V F
Sbjct: 164 TEEPATIFVGRLSWSIDDEWLKKEFEHIG--GVIGARVIYE-RGTDRSRGYGYVDFENKS 220
Query: 87 DAMAAYKRLQKPDVVFGHPER----TVKVAFAEPLREPDPEIMAHVK-TVFLDGVPPHWK 141
A A + +Q ++ G P T K A + + + T+FL + +
Sbjct: 221 YAEKAIQEMQGKEID-GRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNAD 279
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201
+ I + +G+V+ + + + T + K +G++ FS E A ++A+ E+ D N
Sbjct: 280 RDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQG-EYID-NRP 337
Query: 202 VKLRARLSNPMPKTQAVKGGMSG--GFRIGHGSSRTFSRYGRGSGRAG 247
V+L S+P P +GG G G G G +R F GRG R G
Sbjct: 338 VRLD--FSSPRPNNDGGRGGSRGFGGRGGGRGGNRGFG--GRGGARGG 381
>UNIPROTKB|E2RF37 [details] [associations]
symbol:E2RF37 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03000660
Ensembl:ENSCAFT00000003502 OMA:MAMCSAN Uniprot:E2RF37
Length = 330
Score = 137 (53.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 47/202 (23%), Positives = 85/202 (42%)
Query: 74 SRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTV 131
SRGF F+ ++ D AA +P V ER V++ A RE AH VK +
Sbjct: 20 SRGFEFLTYATVEDVDAAMN--VRPHKV---DERVVELKKAVS-REDSQRPGAHLTVKKI 73
Query: 132 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI---- 187
F+ G+ +++ +RD + YG + I + + + ++ + F+ F H++ +
Sbjct: 74 FVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGNKRSFAFVTFDAHDSVDKIVIQKY 133
Query: 188 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 247
+ +N + +K ++ + Q+ G GG G G + F G SG++G
Sbjct: 134 HTVNGHNCEVRKALLKQEMASASSSQRGQSCSGNFGGGCGGGFGGNENFGCGGNLSGQSG 193
Query: 248 HHFNRANFQRGRGFYQHGRNHS 269
F G+ G +S
Sbjct: 194 SGDGCNGFGNDGGYRGGGPGYS 215
WARNING: HSPs involving 217 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.140 0.447 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 450 393 0.00095 117 3 11 22 0.37 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 467
No. of states in DFA: 613 (65 KB)
Total size of DFA: 286 KB (2148 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 31.47u 0.09s 31.56t Elapsed: 00:00:01
Total cpu time: 31.52u 0.09s 31.61t Elapsed: 00:00:01
Start: Mon May 20 19:48:22 2013 End: Mon May 20 19:48:23 2013
WARNINGS ISSUED: 2