BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013047
(450 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255581424|ref|XP_002531520.1| RNA binding protein, putative [Ricinus communis]
gi|223528873|gb|EEF30874.1| RNA binding protein, putative [Ricinus communis]
Length = 841
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 294/436 (67%), Positives = 341/436 (78%), Gaps = 5/436 (1%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
ICGKRCGTAPSEDNDTLF+GNICNTWTKEAI+QKLKDYGVEGVENI LV+D+QHEG SRG
Sbjct: 409 ICGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVENITLVADVQHEGRSRG 468
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ FSCH DAM AYKRLQKPDVVFGHPERT KVAFAEP+REPDPE+MAHVKTVFLDG+
Sbjct: 469 FAFLEFSCHADAMHAYKRLQKPDVVFGHPERTAKVAFAEPIREPDPEVMAHVKTVFLDGL 528
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PPHW E+++R+Q++GYG+++RIVLARNMSTAKRKD+GF+DFS+HEAA+ACI INN E
Sbjct: 529 PPHWDEDRVREQLRGYGEIMRIVLARNMSTAKRKDFGFVDFSSHEAAIACIERINNAELG 588
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ 256
DGNSK +++ARLSNPMPKTQAVKGGM GGF I S T SR+GR GR GHHFN NFQ
Sbjct: 589 DGNSKTRVKARLSNPMPKTQAVKGGMCGGFLIDRTGSGTSSRFGRSFGRGGHHFNWGNFQ 648
Query: 257 RGRGFYQHGRNHSSRMGPTEYDFDNRYTEFHGRQFIGR--GGRSFRGGYNAPSRAAAGAG 314
RGRGFY GR SSRMG EYDF+NRY F+GRQ G+ RGGY R +G G
Sbjct: 649 RGRGFYHRGRGQSSRMGSNEYDFNNRYNPFYGRQITGQGGRRGPPRGGYYPAGRGVSGTG 708
Query: 315 PSRSNPTRLWPDGPDRGYGEHHSYRRQPFSQGEDFDRPFIGRQVDDPYFYDDRAHGVKRS 374
PSR+N R W D P+RG+G+H S RRQPFS F R ++GR DDPY DD AHG+KR
Sbjct: 709 PSRTNFNRPWYDAPERGHGDHPSSRRQPFSPEAAFHRSYVGRNFDDPYLCDDGAHGMKRP 768
Query: 375 FHVMDHEPDYMGPRRFRPRLDYNDPVIPFHGSHHHDNVGACSNHYSDDYHVPNYGAHPPY 434
F++ DH+PDY P R RPRLDY+DP +PF +H+HD GA + YS Y+ P+ GA
Sbjct: 769 FYMTDHDPDYAEPSRHRPRLDYSDPAVPFREAHYHDMYGAGGDPYSHGYYGPDSGAQ--- 825
Query: 435 PPYYGDDRLYGGGYFY 450
PPYY D Y GGY+Y
Sbjct: 826 PPYYRGDGPYRGGYYY 841
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ E +R + G+V+ + L RN++ +K K Y F+ F+ E A ++ +
Sbjct: 345 IFVGGLDREATEEDVRRVFETIGEVVEVRLHRNLAMSKSKGYAFVKFANKEHAKRSLSEM 404
Query: 191 NN 192
N
Sbjct: 405 KN 406
>gi|356561166|ref|XP_003548856.1| PREDICTED: uncharacterized protein LOC100819035 [Glycine max]
Length = 953
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 278/436 (63%), Positives = 325/436 (74%), Gaps = 8/436 (1%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GKRCGTAPSEDNDTLF+GNICNTWTKEAIKQKLKDYG+EGVE+I LV D+QHEGLSRG
Sbjct: 524 IHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVESITLVPDVQHEGLSRG 583
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ FSCH DAM A+KRLQKPDV+FGH ERT KVAFAEP+ EPDPEIMA VK+VF++G+
Sbjct: 584 FAFLEFSCHADAMLAFKRLQKPDVIFGHAERTAKVAFAEPIHEPDPEIMAQVKSVFINGL 643
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PPHW E+ +R+ K YG+++RIVLARNMS+AKRKDYGF+DFSTHEAAVAC++ +N E
Sbjct: 644 PPHWDEDHVRELFKAYGEIVRIVLARNMSSAKRKDYGFVDFSTHEAAVACVDGVNKSELG 703
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHF-NRANF 255
DG SK+K+RARLSNP+PKTQAVKGGMSGGFRI H S FSR GRG GR F NR NF
Sbjct: 704 DGASKIKVRARLSNPLPKTQAVKGGMSGGFRISHARSGAFSRPGRGFGRGRQPFNNRGNF 763
Query: 256 QRGRGFYQHGRNHSSRMG-PTEYDFDNRYTEFHGRQFIGRGGRSFRGGYNAPSRAAAGAG 314
RGR FY+ G + RMG ++DF + + +F RQF +G + RGG+ A SR AA AG
Sbjct: 764 NRGRSFYRGGHSQIGRMGFRDDHDF-SMHPDFRQRQFGPQG--AVRGGHYAGSRGAAFAG 820
Query: 315 PSRSNPTRLWPDGPDRGYGEHHSYRRQPFSQGEDFDRPFIGRQVDDPYFYDDRAHGVKRS 374
PSR R W PD G E RR P+S G FD PF+GR DDPY YDD G+KR
Sbjct: 821 PSRPYHDRAWYGIPDGGPSEPIPPRR-PYSPGGQFDMPFMGRHFDDPYLYDDNMQGMKRP 879
Query: 375 FHVMDHEPDYMGPRRFRPRLDYNDPVIPFHGSHHHDNVGACSNHYSDDYHVPNYGAHPPY 434
F++ D EPDYMGP R RPRLDY DP I F G+HHHD+ GA S Y DY+ +YG Y
Sbjct: 880 FYMTDPEPDYMGPTRLRPRLDYADPPI-FPGTHHHDSFGAGSRQYPPDYYGSDYG-RGSY 937
Query: 435 PPYYGDDRLYGGGYFY 450
YYG D +G GY+Y
Sbjct: 938 SSYYGGDGSHGHGYYY 953
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ E +R + G+++ + L +N ST K K Y F+ F+ E A ++ +
Sbjct: 460 IFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFANKENAKKALSEM 519
Query: 191 NN 192
N
Sbjct: 520 KN 521
>gi|359476835|ref|XP_002266579.2| PREDICTED: uncharacterized protein LOC100259067 [Vitis vinifera]
gi|297735034|emb|CBI17396.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 277/440 (62%), Positives = 324/440 (73%), Gaps = 10/440 (2%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
ICGKRCGTAPSEDN+TLF+GNICNTWTKEAIKQKLKDYG+EGV NI LV + QHEGLSRG
Sbjct: 392 ICGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIEGVGNITLVPNPQHEGLSRG 451
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ FSCH DAM AYKRLQKPDV+FGH ERT KVAFAEPLREPDPEIMA VK+VF+DG+
Sbjct: 452 FAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPLREPDPEIMAQVKSVFVDGL 511
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PPHW E+++R+Q KGYG++ RIVLARNMSTAKRKD+GF+DF+THEAA++CI+++NN E
Sbjct: 512 PPHWDEDRVREQFKGYGEIERIVLARNMSTAKRKDFGFVDFTTHEAALSCIDSVNNTELC 571
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSR-YGRGSGRAGHHFNRANF 255
DGNSK K++ RLSNP+PKTQAVKGG+ GGFRIGHG + S+ G GR GHHFNRA F
Sbjct: 572 DGNSKTKVKVRLSNPLPKTQAVKGGLCGGFRIGHGGVGSSSKFGRGGFGRGGHHFNRAQF 631
Query: 256 QRGRGFYQHGRNHSSRMG-PTEYDFDNRYTEFH--GRQFIGRGGRSFRGGYNAPSRAAAG 312
QR RGFYQ + R+G P DFD Y EFH G S RG Y
Sbjct: 632 QRDRGFYQREYGPTGRLGFPNAPDFDGPYPEFHERHFFGRGGRRGSLRGAYQGSGGGYPA 691
Query: 313 AGPSRSNPTRLWPDGPDRGYGEHHSYRRQPFSQGEDFDRPFIGRQVDDPYFYDDRAHGVK 372
A P R N R DRG+G++ +R+QPF EDFD F GR DDPY Y+D A G+K
Sbjct: 692 AVPPRPNLDRPRHGAIDRGHGKYFPFRQQPFFPEEDFDNSFSGRHFDDPYLYEDNARGIK 751
Query: 373 RSFHVMDHEPDYMGPRRFRPRLDYNDPVIPFHGSHHHDNVGACSNHYSDDYHVPNY--GA 430
R F + D +P YM P RFRPRLDY+DP + FHGS + DN A S+ YS DY+ P+Y GA
Sbjct: 752 RPF-IPDWDPGYMEPSRFRPRLDYSDPEVDFHGSRYRDNFEAGSSLYSQDYYGPDYDRGA 810
Query: 431 HPPYPPYYGDDRLYGGGYFY 450
YP YY DDR Y GGY+Y
Sbjct: 811 ---YPSYYRDDRSYRGGYYY 827
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 184
++ +F+ G+ +E ++ + G+V+ + L +N+S+ K K Y F+ F+ E A
Sbjct: 322 ISKAHEIFVGGLDRDAEEEDVKKVFERIGEVVEVRLHKNLSSNKNKGYAFVKFANKEHAS 381
Query: 185 ACINAINN 192
++ + N
Sbjct: 382 RALSEMKN 389
>gi|356502130|ref|XP_003519874.1| PREDICTED: uncharacterized protein LOC100784338 [Glycine max]
Length = 884
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 278/436 (63%), Positives = 323/436 (74%), Gaps = 8/436 (1%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GKRCGTAPSEDNDTLF+GNICNTWTKEAIKQKLKDYG+EGVENI LV D+QHEGLS G
Sbjct: 455 IHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVENIMLVPDVQHEGLSWG 514
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ FSCH DAM AYKRLQKPDV+FGH ERT KVAFAEP+REPDPEIMA VK+VF++G+
Sbjct: 515 FAFLEFSCHADAMLAYKRLQKPDVMFGHAERTAKVAFAEPIREPDPEIMAQVKSVFINGL 574
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PPHW E+ +R+ K YG+V+RIVLARNMS+AKRKDYGF+DFSTHEAAVAC++ +N E
Sbjct: 575 PPHWDEDHVRELFKSYGEVVRIVLARNMSSAKRKDYGFVDFSTHEAAVACVDGVNKSELG 634
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHF-NRANF 255
DG SK+K+RARLSNP+PKTQAVKGGM GGF+I H S FSR GRG GR F NR NF
Sbjct: 635 DGASKIKVRARLSNPLPKTQAVKGGMCGGFQISHARSGAFSRPGRGFGRGRQPFNNRGNF 694
Query: 256 QRGRGFYQHGRNHSSRMG-PTEYDFDNRYTEFHGRQFIGRGGRSFRGGYNAPSRAAAGAG 314
R R FY+ G + RMG ++DF + + +F RQF +G + RGG+ A SR AA AG
Sbjct: 695 NRSRSFYRGGHSQIGRMGFQDDHDF-SMHPDFRQRQFGPQG--AVRGGHYAGSRGAAFAG 751
Query: 315 PSRSNPTRLWPDGPDRGYGEHHSYRRQPFSQGEDFDRPFIGRQVDDPYFYDDRAHGVKRS 374
PSR R W PD G E RR +S G FD P +GR DDPY YDD HG+KR
Sbjct: 752 PSRPYHDRAWYGIPDGGPIEPIPPRRP-YSPGGQFDMPSMGRHFDDPYLYDDNMHGMKRP 810
Query: 375 FHVMDHEPDYMGPRRFRPRLDYNDPVIPFHGSHHHDNVGACSNHYSDDYHVPNYGAHPPY 434
F++ D EPDYMGP R RPRLDY DP I FHG+HHHD+ GA S Y DY+ +YG Y
Sbjct: 811 FYMTDPEPDYMGPNRLRPRLDYADPPI-FHGTHHHDSFGAGSRQYPPDYYGSDYG-RGSY 868
Query: 435 PPYYGDDRLYGGGYFY 450
YYG D +G GY+Y
Sbjct: 869 LSYYGGDGSHGHGYYY 884
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ E +R + G+++ + L +N ST K K Y F+ FS E A ++ +
Sbjct: 391 IFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFSDKEHAKKALSEM 450
Query: 191 NN 192
N
Sbjct: 451 KN 452
>gi|147803493|emb|CAN64286.1| hypothetical protein VITISV_002726 [Vitis vinifera]
Length = 837
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 253/401 (63%), Positives = 299/401 (74%), Gaps = 5/401 (1%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
ICGKRCGTAPSEDN+TLF+GNICNTWTKEAIKQKLKDYG+EGV NI LV + QHEGLSRG
Sbjct: 392 ICGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIEGVGNITLVPNPQHEGLSRG 451
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ FSCH DAM AYKRLQKPDV+FGH ERT KVAFAEPLREPDPEIMA VK+VF+DG+
Sbjct: 452 FAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPLREPDPEIMAQVKSVFVDGL 511
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PPHW E+++R+Q KGYG++ RIVLARNMSTAKRKD+GF+DF+THEAA++CI+++NN E
Sbjct: 512 PPHWDEDRVREQFKGYGEIERIVLARNMSTAKRKDFGFVDFTTHEAALSCIDSVNNTELC 571
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSR-YGRGSGRAGHHFNRANF 255
DGNSK K++ RLSNP+PKTQAVKGG+ GGFRIGHG + S+ G GR GHHFNRA F
Sbjct: 572 DGNSKTKVKVRLSNPLPKTQAVKGGLCGGFRIGHGGVGSSSKFGRGGFGRGGHHFNRAQF 631
Query: 256 QRGRGFYQHGRNHSSRMG-PTEYDFDNRYTEFH--GRQFIGRGGRSFRGGYNAPSRAAAG 312
QR RGFYQ + R+G P DFD Y ZFH G S RG Y
Sbjct: 632 QRDRGFYQREYGPTGRLGFPNAPDFDGPYPZFHERHFFGRGGRRGSLRGAYQGSGGGYPA 691
Query: 313 AGPSRSNPTRLWPDGPDRGYGEHHSYRRQPFSQGEDFDRPFIGRQVDDPYFYDDRAHGVK 372
A P R N R DRG+G++ +R+QPF EDFD F GR DDPY Y+D A G+K
Sbjct: 692 AVPPRPNLDRPRHGAIDRGHGKYFPFRQQPFFPEEDFDNSFSGRHFDDPYLYEDNARGIK 751
Query: 373 RSFHVMDHEPDYMGPRRFRPRLDYNDPVIPFHGSHHHDNVG 413
R F + D +P YM P RFRPRLDY+DP + FHGS + + +G
Sbjct: 752 RPF-IPDWDPGYMEPSRFRPRLDYSDPEVDFHGSRYREMIG 791
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+ +E ++ + G+V+ + L +N+S+ K K Y F+ F+ E A ++ +
Sbjct: 328 IFVGGLDRDAEEEDVKKVFERIGEVVEVRLHKNLSSNKNKGYAFVKFANKEHASRALSEM 387
Query: 191 NN 192
N
Sbjct: 388 KN 389
>gi|357518111|ref|XP_003629344.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355523366|gb|AET03820.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 989
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 271/511 (53%), Positives = 321/511 (62%), Gaps = 82/511 (16%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GKRCGT+PSEDNDTLF+GNICNTWTKEA+KQKLKDYGVEGVENI LV D+QHEGLSRG
Sbjct: 484 IRGKRCGTSPSEDNDTLFLGNICNTWTKEAVKQKLKDYGVEGVENITLVPDVQHEGLSRG 543
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ FSCH DAM AYKRLQKP V+FGH ERT KVAFAEP+REPDPEIMA VK+VF++G+
Sbjct: 544 FAFLEFSCHADAMLAYKRLQKPGVIFGHAERTAKVAFAEPIREPDPEIMAQVKSVFINGL 603
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
P HW E+ +R+ +K YG++++IVLAR MST+KRKD+GF+DFSTHEAA+AC++ +N E
Sbjct: 604 PLHWDEDHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHEAALACVDGVNKSELG 663
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHF---NRA 253
DG SK+KLRARLSNP+PKTQAVKGGM GG RIG S + R RG GR NR
Sbjct: 664 DGTSKIKLRARLSNPLPKTQAVKGGMCGGLRIGQARSEAYPRSERGFGRGRGRQPFNNRG 723
Query: 254 NFQRGRGFYQH-GRNHSSRMG-PTEYDFDNRYTEFHGRQFIGRGGRSFRGGYNAPSRAAA 311
NF RGR F H GR RMG E DF + + +FH RQF +G RGG+ A SR A
Sbjct: 724 NFSRGRSFNHHGGRGQIRRMGFWDEPDF-SMHPDFHQRQFGPQG--PMRGGHYAASRGGA 780
Query: 312 G-AGPSRSNPTRLW---PDG---------------------PDRGYGEHHSYR------- 339
AGPSR R W PDG PD G GE R
Sbjct: 781 PFAGPSRHYHDRAWYGIPDGGPIEPIPPRRPYSPGGQFYGIPDGGPGEPIPPRRPYSPGG 840
Query: 340 ----------------RQPFSQGEDF------------------------DRPFIGRQVD 359
R+P+S G F D PF+GR VD
Sbjct: 841 QFYGIPDGGPGEPIPPRRPYSPGGQFYRIPDGGPGEPIPLRRPYSPGGQFDMPFMGRHVD 900
Query: 360 DPYFYDDRAHGVKRSFHVMDHEPDYMGPRRFRPRLDYNDPVIPFHGSHHHDNVGACSNHY 419
DPY YDD G+KR FH+ D EPDY+GP RFRPR DY DP + FHG+ HHD GA +
Sbjct: 901 DPYLYDDNMRGIKRPFHMTDPEPDYIGPNRFRPRFDYADPSV-FHGTQHHDYAGAGRGQF 959
Query: 420 SDDYHVPNYGAHPPYPPYYGDDRLYGGGYFY 450
DY+ ++G PYP +YG + +G Y+Y
Sbjct: 960 PPDYYASDHGGA-PYPSFYGGEGPHGHRYYY 989
>gi|357114605|ref|XP_003559089.1| PREDICTED: uncharacterized protein LOC100837927 [Brachypodium
distachyon]
Length = 1019
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 224/450 (49%), Positives = 278/450 (61%), Gaps = 39/450 (8%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GKRCG A SEDNDTLF+GNICNTWTKEAIK++L DYG+EGV+++ LV D Q+EG SRG
Sbjct: 577 IRGKRCGIAASEDNDTLFLGNICNTWTKEAIKKRLLDYGIEGVQSLTLVPDTQNEGQSRG 636
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ FSCH DAM A+KRLQ+PD +FGHPERT KVAFAEP++EPD E+MA VK+VF+DG+
Sbjct: 637 FAFLEFSCHADAMLAFKRLQQPDAMFGHPERTAKVAFAEPIKEPDAEVMAQVKSVFIDGL 696
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF- 195
PP+W E++++D+ K YG + R+VLA NMS+AKR D+GF++FSTHEAA+ACI A NN E
Sbjct: 697 PPYWDEDRVKDRFKAYGVIERVVLASNMSSAKRNDFGFVNFSTHEAALACIEATNNTELG 756
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF 255
DG SKVK+R RLSNP+PK+QAVKGGM+GGFRIG+ S F+R GRG + RA F
Sbjct: 757 DDGKSKVKVRVRLSNPLPKSQAVKGGMTGGFRIGY-SGFGFNRPGRGFSKGRSAPRRAGF 815
Query: 256 QRGRGFYQHGRNHSSRMGPTEYDFDNRYTEFHGRQFIGRGGRSFRGGYNAPSRAAAGAGP 315
GRGF H +R G Y +N E F GR G FRGG PS G+
Sbjct: 816 HGGRGFSNHA---FARGGRFNYAANNNSFEASPSNFQGRQGSGFRGGRWQPSSVRHGSFN 872
Query: 316 SRSNPTRLWPDGPDRGYGEHHSYRRQPFSQGEDFDRPFIGRQVDDPYFYDDRAHGVKRSF 375
S G RGY RR F DF PF ++PY+Y D VKR +
Sbjct: 873 S----------GLGRGYPPS---RRPSFEPEGDFGGPFD----ENPYYYADVGPCVKRPY 915
Query: 376 HVMDHEPDYM--GPRRFRPRLD-YNDPVI----------PFHGSH---HHDNVGACSNHY 419
+M+ + Y GP R R R D Y P PF G H +D + N Y
Sbjct: 916 SLMEPDLGYFEPGPPRVRSRFDHYEQPFSGGHSFDQYDQPFSGGHRFDQYDQPFSGGNRY 975
Query: 420 SDDYHVPNYGAHPPYPPYYGDDRLYGGGYF 449
D + + N + Y P D+ YG G F
Sbjct: 976 RDSFGMENVRSRDYYGPGPAPDQ-YGRGTF 1004
>gi|326507886|dbj|BAJ86686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 751
Score = 360 bits (925), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 215/438 (49%), Positives = 269/438 (61%), Gaps = 47/438 (10%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GKRCG A SEDNDTLF+ NICNTWTKEAIK++L DYGVEGV+++ LV D Q+EG SRG
Sbjct: 310 IHGKRCGVAASEDNDTLFLCNICNTWTKEAIKKRLLDYGVEGVQSLTLVPDTQNEGQSRG 369
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ FSCH DAM A+KRLQ+PD +FGHPERT KVAFAEP++E D E+MA VK+VF++G+
Sbjct: 370 FAFLEFSCHADAMLAFKRLQQPDALFGHPERTAKVAFAEPIKEADAEVMAQVKSVFINGL 429
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF- 195
PP+W E +++++ K YG + R+VLARNMS+AKR D+GF++FSTHE A+ACI A NN E
Sbjct: 430 PPYWDEERVKNRFKAYGLIERVVLARNMSSAKRNDFGFVNFSTHEEALACIEATNNTELG 489
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF 255
DG +K+K+R RLSNP+PK+QAVKG MSGGFRIGH S F+R GRG R R F
Sbjct: 490 DDGKAKLKVRVRLSNPLPKSQAVKGEMSGGFRIGHPGS-GFNRPGRGFNRGRAAPRREGF 548
Query: 256 QRGRGFYQH--GRNHSSRMGPTEYDFDNRYTEFHGRQFIGRGGRSFRGGYNAPSRAAAGA 313
RGF H GR + F+ ++F RQ +FRGG
Sbjct: 549 HGDRGFSNHTPGRGGRFNSAYSNNSFEASPSDFRARQ----APPAFRGG----------- 593
Query: 314 GPSRSNPTRLWPDGPDRGYGEHHSYRRQPFSQGE-DFDRPFIGRQVDDPYFYDDRAHGVK 372
R P D DRG G + R P + E DF RPF ++PYF++D H K
Sbjct: 594 ---RWEPYSGRHDFFDRGQGRGYPPPRGPAFEPEGDFGRPF----GENPYFHEDVRHSTK 646
Query: 373 RSFHVMDHEPD---YMGPRRFRPRLD-YNDPVIPFHGSHHHDNVGACSNHYSD------D 422
R + M+ P GP R RPR D Y+ P PF G + D HY D
Sbjct: 647 RPYSHMEPGPAGYFEPGPPRVRPRFDHYDQP--PFSGGNRFD-------HYDQPPFPGGD 697
Query: 423 YHVPNYGAHPPYP-PYYG 439
H ++G PY YYG
Sbjct: 698 RHRDSFGTRGPYSRDYYG 715
>gi|343172764|gb|AEL99085.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 167/244 (68%), Positives = 198/244 (81%), Gaps = 7/244 (2%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GKRCGTA SEDNDTLF+GNICNTWTKEAI +KLK+Y +EGVENI LV D +HEGLSRG
Sbjct: 218 ISGKRCGTAASEDNDTLFIGNICNTWTKEAITKKLKEYNLEGVENITLVQDPRHEGLSRG 277
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F F+ F+CH DAM A+KRLQKPDV+FGH ERTVKVAF+EPL+EPDPEIMA VK+VF+DG+
Sbjct: 278 FCFIQFACHDDAMFAFKRLQKPDVIFGHAERTVKVAFSEPLQEPDPEIMAKVKSVFIDGL 337
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PP+W E+++R +GYG++ R+ LARNM AKRKD+GF+DF THEAA+ACI+ IN K+
Sbjct: 338 PPYWDEDRVRKHFQGYGEIERVTLARNMPAAKRKDFGFVDFLTHEAAIACIDDINKKDLV 397
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ 256
DGNSK+K+RARLSNP+PK QAVKGGM GGFRIG + GR GR G NR NFQ
Sbjct: 398 DGNSKIKVRARLSNPLPKMQAVKGGMRGGFRIGRPN-------GRSLGRPGPLINRPNFQ 450
Query: 257 RGRG 260
GR
Sbjct: 451 YGRA 454
>gi|343172766|gb|AEL99086.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 166/244 (68%), Positives = 197/244 (80%), Gaps = 7/244 (2%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GKRCGTA SEDNDTLF+GNICNTWTKEAI +KLK+Y +EGVENI LV D +HEGLSRG
Sbjct: 218 ISGKRCGTAASEDNDTLFIGNICNTWTKEAINKKLKEYNLEGVENITLVQDPRHEGLSRG 277
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F F+ F+CH DAM A+KRLQKPDV+FGH ERTVKVAF+EPL+EPDPEIMA VK+VF+DG+
Sbjct: 278 FCFIQFACHDDAMFAFKRLQKPDVIFGHAERTVKVAFSEPLQEPDPEIMAKVKSVFIDGL 337
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PP+W E+++R +GYG++ R+ LARNM AKRKD+GF+DF THEAA+ACI +N K+
Sbjct: 338 PPYWDEDRVRKHFQGYGEIKRVTLARNMPAAKRKDFGFVDFMTHEAAIACIEDVNKKDLV 397
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ 256
DGNSK+K+RARLSNP+PK QAVKGGM GGFRIG + GR GR G NR NFQ
Sbjct: 398 DGNSKIKVRARLSNPLPKMQAVKGGMRGGFRIGRPN-------GRSLGRPGPLINRPNFQ 450
Query: 257 RGRG 260
GR
Sbjct: 451 YGRA 454
>gi|224133750|ref|XP_002327671.1| predicted protein [Populus trichocarpa]
gi|222836756|gb|EEE75149.1| predicted protein [Populus trichocarpa]
Length = 284
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 155/198 (78%), Positives = 182/198 (91%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GKRCGTAPSEDNDTLF+GNICNTWTKEAI+QKLKDYGVEGVENI +VSD QHEG SRG
Sbjct: 87 IRGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVENITVVSDAQHEGRSRG 146
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ F+CH DAM AYKRLQKPDVVFGHPERT KVAFAEP+REPDPEIMA VKT+FLDG+
Sbjct: 147 FAFLEFACHADAMLAYKRLQKPDVVFGHPERTAKVAFAEPIREPDPEIMAQVKTIFLDGL 206
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PPHW E+++R+ +KGYG+++R+VLARNMSTAKRKD+GF+DFSTH+ AVACI INN+EF
Sbjct: 207 PPHWDEDRVRECLKGYGEIVRVVLARNMSTAKRKDFGFVDFSTHDDAVACIEGINNREFG 266
Query: 197 DGNSKVKLRARLSNPMPK 214
+GN+K +++ARLSNP+PK
Sbjct: 267 NGNTKTRVKARLSNPLPK 284
>gi|224097146|ref|XP_002310851.1| predicted protein [Populus trichocarpa]
gi|222853754|gb|EEE91301.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 156/198 (78%), Positives = 182/198 (91%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GKRCGTAPSEDNDTLF+GNICNTWTKEAI+QKLKDYGVEGVENI +V D QHEG SRG
Sbjct: 92 IRGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVENITVVPDAQHEGRSRG 151
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ F+CH DAM AYKRLQKPDVVFGHPERT KVAF+EP+REPDPEIMA VKT+FLDG+
Sbjct: 152 FAFLEFACHTDAMLAYKRLQKPDVVFGHPERTAKVAFSEPIREPDPEIMAQVKTIFLDGL 211
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PPHW E+ +R+ +KGYG+++RIVLARNMSTAKRKD+GF+DFSTHEAAVACI INN+EF
Sbjct: 212 PPHWDEDHVRECVKGYGEIVRIVLARNMSTAKRKDFGFVDFSTHEAAVACIEGINNREFG 271
Query: 197 DGNSKVKLRARLSNPMPK 214
+GN+K++++ARLSNP+PK
Sbjct: 272 NGNTKMRVKARLSNPLPK 289
>gi|225462858|ref|XP_002270102.1| PREDICTED: uncharacterized protein LOC100266805 [Vitis vinifera]
Length = 719
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/355 (42%), Positives = 202/355 (56%), Gaps = 59/355 (16%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GK+CG APS+D+DTLFVGNIC TWTK A+K KL YGV+ E++ LV D ++EG++RG
Sbjct: 191 INGKQCGVAPSQDSDTLFVGNICKTWTKVAVKDKLAYYGVDKYEDLTLVEDTKNEGMNRG 250
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ FS DA+ A KRLQK DVVFG +RT +VAFA+ EPD EIM+ V+T+FLDG+
Sbjct: 251 FAFLDFSSRADALEACKRLQKRDVVFG-TDRTARVAFADTFIEPDDEIMSQVRTIFLDGL 309
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
P W E+++RD +K +G + +I LARNM AKR D+GF+ F TH++AVAC+++INN E
Sbjct: 310 PATWDEDRVRDYLKKFGRIEKIELARNMPAAKRTDFGFVTFDTHDSAVACVDSINNSELV 369
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ 256
DG VK+RARLS P + ++ K GG+ + GS
Sbjct: 370 DGERLVKVRARLSRPRQRGKSAKHA-RGGYLVAQGS------------------------ 404
Query: 257 RGRGFYQHGRNHSSRMGPTEYDFDNRYTEFHGRQFIGRGGRSF--RGGYNAPSRAAAG-- 312
GRGF + SSRM +F GRGGRS RG Y+ + G
Sbjct: 405 -GRGFKAPWGSSSSRMDSW--------------KFTGRGGRSMQTRGAYDGGLKRPVGPR 449
Query: 313 -------AGPSRSNPTRLWPDGPDRGYG------EHHSYRRQPFSQGEDFDRPFI 354
P+R R +P P+ +G E S +R+ + E F RP +
Sbjct: 450 DRHSMMEMVPTRVGSRRRFP-SPESSFGRRSPVYEKSSTKREYIQRDESFSRPAV 503
>gi|296087486|emb|CBI34075.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/355 (42%), Positives = 202/355 (56%), Gaps = 59/355 (16%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GK+CG APS+D+DTLFVGNIC TWTK A+K KL YGV+ E++ LV D ++EG++RG
Sbjct: 252 INGKQCGVAPSQDSDTLFVGNICKTWTKVAVKDKLAYYGVDKYEDLTLVEDTKNEGMNRG 311
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ FS DA+ A KRLQK DVVFG +RT +VAFA+ EPD EIM+ V+T+FLDG+
Sbjct: 312 FAFLDFSSRADALEACKRLQKRDVVFG-TDRTARVAFADTFIEPDDEIMSQVRTIFLDGL 370
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
P W E+++RD +K +G + +I LARNM AKR D+GF+ F TH++AVAC+++INN E
Sbjct: 371 PATWDEDRVRDYLKKFGRIEKIELARNMPAAKRTDFGFVTFDTHDSAVACVDSINNSELV 430
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ 256
DG VK+RARLS P + ++ K GG+ + GS
Sbjct: 431 DGERLVKVRARLSRPRQRGKSAKHA-RGGYLVAQGS------------------------ 465
Query: 257 RGRGFYQHGRNHSSRMGPTEYDFDNRYTEFHGRQFIGRGGRSF--RGGYNAPSRAAAG-- 312
GRGF + SSRM +F GRGGRS RG Y+ + G
Sbjct: 466 -GRGFKAPWGSSSSRMDSW--------------KFTGRGGRSMQTRGAYDGGLKRPVGPR 510
Query: 313 -------AGPSRSNPTRLWPDGPDRGYG------EHHSYRRQPFSQGEDFDRPFI 354
P+R R +P P+ +G E S +R+ + E F RP +
Sbjct: 511 DRHSMMEMVPTRVGSRRRFP-SPESSFGRRSPVYEKSSTKREYIQRDESFSRPAV 564
>gi|359386142|gb|AEV43360.1| RNA recognition motif protein 1 [Citrus sinensis]
Length = 775
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 120/219 (54%), Positives = 162/219 (73%), Gaps = 2/219 (0%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GK+CG PS+D+DTLF+GNIC TWTKEA+K+KLK YGV+ VE++ LV D +EG++RG
Sbjct: 263 INGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRG 322
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ FS DAM A+KRLQK DV+FG +R KV+FA+ +P EIMA VKTVF+DG+
Sbjct: 323 FAFLEFSSRSDAMDAFKRLQKRDVLFGV-DRPAKVSFADSFIDPGDEIMAQVKTVFVDGL 381
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
P W E+++R+ +K YG++ +I LARNM +AKRKD+GF+ F TH+AAV C +INN E
Sbjct: 382 PASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRT 235
+G++K K+RARLS P+ + + K G FR G G+ R
Sbjct: 442 EGDNKAKVRARLSRPLQRGKG-KHASRGDFRSGRGTGRA 479
>gi|359489218|ref|XP_002270340.2| PREDICTED: uncharacterized protein LOC100232913 [Vitis vinifera]
gi|297734640|emb|CBI16691.3| unnamed protein product [Vitis vinifera]
Length = 812
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 121/215 (56%), Positives = 160/215 (74%), Gaps = 2/215 (0%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
+ GK+CG PS+D+DTLF+GNIC TWTKEA+K+KLK YGVE VE++ LV D +EG++RG
Sbjct: 298 VNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNEGMNRG 357
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ FS DAM A+KRLQK DVVFG +RT KV+FA+ +P EIMA VKTVF+DG+
Sbjct: 358 FAFLEFSSRSDAMDAFKRLQKRDVVFGV-DRTAKVSFADSFIDPGDEIMAQVKTVFIDGL 416
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
P W E+++R+ +K YG++ +I LARNM +AKRKD+GF+ F TH+AAV C +INN E
Sbjct: 417 PASWDEDRVRELLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 476
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHG 231
+G +K K+RARLS P+ + + K G FR G G
Sbjct: 477 EGENKAKVRARLSRPLQRGKG-KHISRGDFRPGRG 510
>gi|222629297|gb|EEE61429.1| hypothetical protein OsJ_15642 [Oryza sativa Japonica Group]
Length = 730
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/233 (51%), Positives = 167/233 (71%), Gaps = 7/233 (3%)
Query: 2 LQLFLIYILIFPLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVEN 61
L++++ YI++ GK+CG APS DNDTLFVGNIC TWTKE +K+KLK YGVE ++
Sbjct: 203 LKIWIFYIMVR------GKQCGVAPSHDNDTLFVGNICKTWTKEHLKEKLKSYGVENFDD 256
Query: 62 INLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD 121
+ LV D + G++RG+A + FS +AM A++RLQK DVVFG +R+ KV+FA+ E D
Sbjct: 257 LLLVEDSNNPGMNRGYALLEFSTRPEAMDAFRRLQKRDVVFGV-DRSAKVSFADSYPEVD 315
Query: 122 PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 181
EIMA V+TVF+DG+PP W E++++ +K YG + ++ LARNM AKRKD+GF+ F TH+
Sbjct: 316 DEIMAQVRTVFIDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTHD 375
Query: 182 AAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 234
AVAC + I N E +G+SK K+RARLS P+ + +K G+ G FR+G G+ R
Sbjct: 376 NAVACADGITNSEIGEGDSKAKVRARLSRPLQRPPRMKHGLRGNFRVGQGAPR 428
>gi|218195305|gb|EEC77732.1| hypothetical protein OsI_16837 [Oryza sativa Indica Group]
Length = 572
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 160/219 (73%), Gaps = 1/219 (0%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
++ GK+CG APS DNDTLFVGNIC TWTKE +K+KLK YGVE +++ LV D + G++R
Sbjct: 53 EVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKEKLKSYGVENFDDLLLVEDSNNPGMNR 112
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
G+A + FS +AM A++RLQK DVVFG +R+ KV+FA+ E D EIMA V+TVF+DG
Sbjct: 113 GYALLEFSTRPEAMDAFRRLQKRDVVFGV-DRSAKVSFADSYPEVDDEIMAQVRTVFIDG 171
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+PP W E++++ +K YG + ++ LARNM AKRKD+GF+ F TH+ AVAC + I N E
Sbjct: 172 LPPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTHDNAVACADGITNSEI 231
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 234
+G+SK K+RARLS P+ + +K G+ G FR+G G+ R
Sbjct: 232 GEGDSKAKVRARLSRPLQRPPRMKHGLRGNFRVGQGAPR 270
>gi|115459706|ref|NP_001053453.1| Os04g0543200 [Oryza sativa Japonica Group]
gi|38345947|emb|CAE04271.2| OSJNBb0103I08.18 [Oryza sativa Japonica Group]
gi|38345949|emb|CAE04337.2| OSJNBb0038F03.1 [Oryza sativa Japonica Group]
gi|113565024|dbj|BAF15367.1| Os04g0543200 [Oryza sativa Japonica Group]
gi|215678877|dbj|BAG95314.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215717042|dbj|BAG95405.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 774
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 116/218 (53%), Positives = 159/218 (72%), Gaps = 1/218 (0%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
+ GK+CG APS DNDTLFVGNIC TWTKE +K+KLK YGVE +++ LV D + G++RG
Sbjct: 256 VRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKEKLKSYGVENFDDLLLVEDSNNPGMNRG 315
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
+A + FS +AM A++RLQK DVVFG +R+ KV+FA+ E D EIMA V+TVF+DG+
Sbjct: 316 YALLEFSTRPEAMDAFRRLQKRDVVFGV-DRSAKVSFADSYPEVDDEIMAQVRTVFIDGL 374
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PP W E++++ +K YG + ++ LARNM AKRKD+GF+ F TH+ AVAC + I N E
Sbjct: 375 PPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTHDNAVACADGITNSEIG 434
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 234
+G+SK K+RARLS P+ + +K G+ G FR+G G+ R
Sbjct: 435 EGDSKAKVRARLSRPLQRPPRMKHGLRGNFRVGQGAPR 472
>gi|224136394|ref|XP_002326849.1| predicted protein [Populus trichocarpa]
gi|222835164|gb|EEE73599.1| predicted protein [Populus trichocarpa]
Length = 343
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 121/219 (55%), Positives = 162/219 (73%), Gaps = 2/219 (0%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GK+CG PS+D+DTLF+GNIC TWTKEA+K+KLK YGVE VE++ LV D + G++RG
Sbjct: 98 INGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNLGMNRG 157
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ FS DAM A+KRLQK DV+FG +R KV+FA+ P EIMA VKT+F+DG+
Sbjct: 158 FAFLEFSSRSDAMNAFKRLQKRDVLFG-VDRPAKVSFADSFIGPGDEIMAQVKTLFIDGL 216
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
P W E++ R +K YG++ +I LARNM +A+RKD+GF+ F TH+AAVAC +INN E
Sbjct: 217 PASWDEDRFRVLLKKYGNIEKIELARNMPSARRKDFGFVTFDTHDAAVACAKSINNVELG 276
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRT 235
+G++KVK+RARLS P+ + + K G F+ GHG+SR
Sbjct: 277 EGDNKVKVRARLSRPLQRGKG-KHASRGDFQSGHGASRV 314
>gi|255571057|ref|XP_002526479.1| RNA binding protein, putative [Ricinus communis]
gi|223534154|gb|EEF35870.1| RNA binding protein, putative [Ricinus communis]
Length = 784
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 112/196 (57%), Positives = 152/196 (77%), Gaps = 1/196 (0%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GK+CG PS+D+DTLF+GNIC TWTKEA+K+KLK YGVE VE++ LV D +EG++RG
Sbjct: 279 INGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDVTLVEDSNNEGMNRG 338
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ FS DAM A+KRLQK DV+FG +R KV+FA+ +P EIMA VKTVF+DG+
Sbjct: 339 FAFLEFSSRSDAMDAFKRLQKRDVLFGV-DRPAKVSFADSFIDPGDEIMAQVKTVFVDGL 397
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
P W E+++R+ +K +G++ +I LARNM +AKRKD+GF+ F +H+AAV C +INN E
Sbjct: 398 PASWDEDRVRELLKKFGEIEKIELARNMPSAKRKDFGFVTFDSHDAAVTCAKSINNAELG 457
Query: 197 DGNSKVKLRARLSNPM 212
+G++K K+RARLS P+
Sbjct: 458 EGDNKAKVRARLSRPL 473
>gi|326497027|dbj|BAK02098.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 776
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 116/218 (53%), Positives = 159/218 (72%), Gaps = 1/218 (0%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
+ GK+CG APS DNDTLFVGNIC TWTKE +K KLK Y VE +++ LV D + G++RG
Sbjct: 260 VRGKQCGVAPSRDNDTLFVGNICKTWTKEHLKDKLKIYEVENFDDLILVEDSNNPGMNRG 319
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
+A + FS +AM A++RLQK DVVFG +RT KV+FA+ E D E+MA V+TVFLDG+
Sbjct: 320 YALLEFSTRPEAMDAFRRLQKRDVVFGV-DRTAKVSFADSYPEVDDEMMAQVRTVFLDGL 378
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PP W+E++++ +K YG + ++ LARNM AKRKD+GF+ F TH+ AVAC++ I + E
Sbjct: 379 PPSWEEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTHDNAVACVDGITSSEIG 438
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 234
+G+SK K+RARLS P+ + +K G+ G FRIGH + R
Sbjct: 439 EGDSKAKVRARLSRPVQRPPRMKHGLRGNFRIGHSAPR 476
>gi|224067534|ref|XP_002302501.1| predicted protein [Populus trichocarpa]
gi|222844227|gb|EEE81774.1| predicted protein [Populus trichocarpa]
Length = 341
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 119/219 (54%), Positives = 162/219 (73%), Gaps = 2/219 (0%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GK+CG PS+D+DTLF+GNIC TWTKEA+K+KLK YGVE V+++ LV D + G++RG
Sbjct: 98 INGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVKDLTLVEDSNNAGMNRG 157
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ FS DAM A+KRLQK DV+FG +R KV+FA+ +P EIMA VKTVF+DG+
Sbjct: 158 FAFLEFSSRSDAMDAFKRLQKRDVLFG-VDRPAKVSFADSFIDPGDEIMAQVKTVFIDGL 216
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
P W E+++R +K YG++ +I LARNM +A+RKD+GF+ F TH+AAV C +INN E
Sbjct: 217 PASWDEDRVRVLLKKYGEIEKIELARNMPSARRKDFGFVTFDTHDAAVTCAKSINNAELG 276
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRT 235
+G++K K+RARLS P+ + + K G FR G+G+SR
Sbjct: 277 EGDNKAKVRARLSRPLQRGKG-KHLSRGDFRPGYGASRV 314
>gi|357165062|ref|XP_003580257.1| PREDICTED: uncharacterized protein LOC100827844 [Brachypodium
distachyon]
Length = 783
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 157/218 (72%), Gaps = 1/218 (0%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
+ GK+CG APS DNDTLFVGNIC TWTKE +K KLK Y VE +++ LV D + G++RG
Sbjct: 265 VRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKDKLKSYEVENFDDLILVEDSNNPGMNRG 324
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
+A + FS +AM A++RLQK D VFG +R+ KV+FA+ E D E+MA V+T+FLDG+
Sbjct: 325 YALLEFSTRPEAMDAFRRLQKRDAVFGV-DRSAKVSFADSYPEVDDEMMAQVRTIFLDGL 383
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PP W E++++ +K YG + ++ LARNM AKRKD+GF+ F TH+ AVAC++ I + E
Sbjct: 384 PPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTHDNAVACVDGITSSEIG 443
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 234
+G+SK K+RARLS P+ + +K G+ G FRIG G+ R
Sbjct: 444 EGDSKAKVRARLSRPLQRPPRMKHGLRGNFRIGQGAPR 481
>gi|414586039|tpg|DAA36610.1| TPA: hypothetical protein ZEAMMB73_089352 [Zea mays]
gi|414586040|tpg|DAA36611.1| TPA: RNA recognition water-stress protein1, mRNA isoform 2 [Zea
mays]
gi|414586041|tpg|DAA36612.1| TPA: hypothetical protein ZEAMMB73_089352 [Zea mays]
Length = 794
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 155/218 (71%), Gaps = 1/218 (0%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
+ GK+CG APS DNDTLFVGNIC TWTKE +K KLK YGVE +++ L D + G++RG
Sbjct: 278 VRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKDKLKSYGVESFDDLLLAEDTNNPGMNRG 337
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
+A + FS +AM A++ LQK DVVFG +R+ KV+FA+ + D EIMA V+TVFLDG+
Sbjct: 338 YALLEFSTRPEAMDAFRTLQKRDVVFGV-DRSAKVSFADSYPQVDDEIMAQVRTVFLDGL 396
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PP W E++++ +K YG + ++ LARNM AKRKD+GF+ F TH+ AVAC ++N E
Sbjct: 397 PPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTHDNAVACTEGMSNSEIG 456
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 234
+G K K+RARLS P+ + +K G+ G FR+GHG+ R
Sbjct: 457 EGEHKAKVRARLSRPLQRPPRMKHGLRGNFRVGHGAPR 494
>gi|37359248|gb|AAN77868.1| putative heterogeneous nuclear ribonucleoprotein [Vitis vinifera]
Length = 342
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 117/215 (54%), Positives = 157/215 (73%), Gaps = 2/215 (0%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
+ GK+CG PS+D+DTLF+GNIC TWTKEA+K+KLK YGVE VE++ LV D +EG++RG
Sbjct: 97 VNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNEGMNRG 156
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ FS DAM A+KRLQ+ VFG +RT KV+F + +P EIMA VKTVF+DG+
Sbjct: 157 FAFLEFSFRSDAMDAFKRLQEERCVFG-VDRTAKVSFTDSFIDPGDEIMAQVKTVFIDGL 215
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
P W E+++R+ +K YG++ +I LARNM +AKRKD+GF+ F TH+AAV C +INN E
Sbjct: 216 PASWDEDRVRELLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 275
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHG 231
+G +K K+RARLS P+ + + K G FR G G
Sbjct: 276 EGENKAKVRARLSRPLQRGKG-KHISRGDFRPGRG 309
>gi|449432380|ref|XP_004133977.1| PREDICTED: uncharacterized protein LOC101208921 [Cucumis sativus]
Length = 788
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 120/236 (50%), Positives = 161/236 (68%), Gaps = 13/236 (5%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GK+CG PS+D+DTLF+GNIC TW K+A+K+KLK YGV+ VE++ LV D +EG +RG
Sbjct: 296 INGKQCGVTPSQDSDTLFLGNICKTWKKDALKEKLKHYGVDNVEDLTLVEDSNNEGSNRG 355
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ FS DAM A+KRLQK DVVFG +R KV+FA+ +P EIMA VKTVF+D +
Sbjct: 356 FAFLEFSSRSDAMDAFKRLQKRDVVFGV-DRPAKVSFADSFIDPGDEIMAQVKTVFVDSL 414
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
P W E +R +K YG++ +I LARNM +AKRKD+GF+ F TH+AAV+C +INN E
Sbjct: 415 PASWDEEFVRGLLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVSCAKSINNSELG 474
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR 252
+G++K K+RARLS P+ + + G +SRT GR +GR + R
Sbjct: 475 EGDNKAKVRARLSRPLQRGK------------GKHASRTDYWPGRTTGRVRGSWTR 518
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG + +E +K+ G V + L+ + Q + ++GFAF+ F+ +A A
Sbjct: 232 VFVGGLDKDVKEEDLKKVFSAVG--EVTEVRLMMNPQTKK-NKGFAFLRFATVEEAKRAV 288
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
L+ P V+ G K P ++ D T+FL + WK++ +++++K Y
Sbjct: 289 SELKNP-VING------KQCGVTPSQDSD--------TLFLGNICKTWKKDALKEKLKHY 333
Query: 153 G--DVIRIVLARNMST-AKRKDYGFIDFSTHEAAVACINAINNKEF 195
G +V + L + + + + F++FS+ A+ + ++
Sbjct: 334 GVDNVEDLTLVEDSNNEGSNRGFAFLEFSSRSDAMDAFKRLQKRDV 379
>gi|449519174|ref|XP_004166610.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101228505 [Cucumis sativus]
Length = 788
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 120/236 (50%), Positives = 161/236 (68%), Gaps = 13/236 (5%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GK+CG PS+D+DTLF+GNIC TW K+A+K+KLK YGV+ VE++ LV D +EG +RG
Sbjct: 296 INGKQCGVTPSQDSDTLFLGNICKTWKKDALKEKLKHYGVDNVEDLTLVEDSNNEGSNRG 355
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ FS DAM A+KRLQK DVVFG +R KV+FA+ +P EIMA VKTVF+D +
Sbjct: 356 FAFLEFSSRSDAMDAFKRLQKRDVVFGV-DRPAKVSFADSFIDPGDEIMAQVKTVFVDSL 414
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
P W E +R +K YG++ +I LARNM +AKRKD+GF+ F TH+AAV+C +INN E
Sbjct: 415 PASWDEEFVRGLLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVSCAKSINNSELG 474
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR 252
+G++K K+RARLS P+ + + G +SRT GR +GR + R
Sbjct: 475 EGDNKAKVRARLSRPLQRGK------------GKHASRTDYWPGRTTGRVRGSWTR 518
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG + +E +K+ G V + L+ + Q + ++GFAF+ F+ +A A
Sbjct: 232 VFVGGLDKDVKEEDLKKVFSAVG--EVTEVRLMMNPQTKK-NKGFAFLRFATVEEAKRAV 288
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
L+ P V+ G K P ++ D T+FL + WK++ +++++K Y
Sbjct: 289 SELKNP-VING------KQCGVTPSQDSD--------TLFLGNICKTWKKDALKEKLKHY 333
Query: 153 G--DVIRIVLARNMST-AKRKDYGFIDFSTHEAAVACINAINNKEF 195
G +V + L + + + + F++FS+ A+ + ++
Sbjct: 334 GVDNVEDLTLVEDSNNEGSNRGFAFLEFSSRSDAMDAFKRLQKRDV 379
>gi|297824497|ref|XP_002880131.1| hypothetical protein ARALYDRAFT_483601 [Arabidopsis lyrata subsp.
lyrata]
gi|297325970|gb|EFH56390.1| hypothetical protein ARALYDRAFT_483601 [Arabidopsis lyrata subsp.
lyrata]
Length = 805
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 159/241 (65%), Gaps = 16/241 (6%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GK+CG S+DNDTLF+GNIC TWT EA+++KLK YGVE +++I LV D + ++RG
Sbjct: 276 INGKKCGVTASQDNDTLFIGNICKTWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRG 335
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
+AF+ FS DAM A+KRL K DV+FG E+ KV+F + +P+ EIMA VKT+F+DG+
Sbjct: 336 YAFLEFSSRSDAMDAHKRLVKKDVMFGV-EKPAKVSFTDSFLDPEDEIMAQVKTIFIDGL 394
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
P W E ++RD +K YG + ++ LARNM +A+RKD+GF+ F THEAAV C INN E
Sbjct: 395 LPSWNEERVRDLLKRYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVTCAKFINNSELG 454
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ 256
+G K K+RARLS P+ K G SSR+ R G+GR+G R +F
Sbjct: 455 EGEDKAKVRARLSRPLQKAGK-----------GRQSSRSDQRSRHGTGRSG----RISFA 499
Query: 257 R 257
R
Sbjct: 500 R 500
>gi|356522972|ref|XP_003530116.1| PREDICTED: uncharacterized protein LOC100777658 [Glycine max]
Length = 866
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 155/228 (67%), Gaps = 13/228 (5%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GK+CG PS+D+DTL++GNIC TWTKEA+K+KLK YGV VE++ LV D EG +RG
Sbjct: 348 INGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDEGKNRG 407
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ F +AM A+KRLQ+ DVVFG ++ KV+FA+ +P EIMA VKTVF+D +
Sbjct: 408 FAFLEFPSRSEAMDAFKRLQRRDVVFGV-DKLAKVSFADSFIDPGDEIMAQVKTVFIDAL 466
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PP W E+ +RD ++ YG++ +I LARNM A+RKDYGF+ F TH+AAV C ++I E
Sbjct: 467 PPSWDEDYVRDLLRKYGEIEKIELARNMPAARRKDYGFVTFGTHDAAVKCADSITGTELG 526
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSG 244
+G+ K K+RARLS P+ + + G SSR R RGSG
Sbjct: 527 EGHKKAKVRARLSRPLQRGR------------GKHSSRGDYRSSRGSG 562
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG + T+ +++ + GV V + L+ + Q + ++GFAF+ F A A
Sbjct: 284 VFVGGLDKDATESDLRKVFGEVGV--VTEVRLMMNPQTKK-NKGFAFLRFETVEQAKRAV 340
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
L+ P V+ G K P ++ D T++L + W + +++++K Y
Sbjct: 341 AELKNP-VING------KQCGVTPSQDSD--------TLYLGNICKTWTKEALKEKLKHY 385
Query: 153 G--DVIRIVLARNMS-TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202
G +V + L + + K + + F++F + A+ + ++ G K+
Sbjct: 386 GVTNVEDLTLVEDTNDEGKNRGFAFLEFPSRSEAMDAFKRLQRRDVVFGVDKL 438
>gi|356503232|ref|XP_003520415.1| PREDICTED: uncharacterized protein LOC100779340 [Glycine max]
Length = 816
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 152/216 (70%), Gaps = 2/216 (0%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GK+CG PS+D+DTL++GNIC TWTKEA+K+KLK YGV VE++ LV D EG +RG
Sbjct: 298 INGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDEGKNRG 357
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ F +AM A+KRLQ+ DVVFG ++ KV+FA+ +P EIMA VKTVF+D +
Sbjct: 358 FAFLEFPSRSEAMDAFKRLQRRDVVFGV-DKPAKVSFADSFIDPGDEIMAQVKTVFIDAL 416
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PP W E+ +RD ++ YG++ +I LARNM A+RKDYGF+ F +H+AAV C ++I E
Sbjct: 417 PPSWDEDYVRDLLRKYGEIEKIELARNMPAARRKDYGFVTFGSHDAAVKCADSITGTELG 476
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGS 232
+G+ K K+RARLS P+ + + K G +R GS
Sbjct: 477 EGDKKAKVRARLSRPLQRGRG-KHISRGDYRSSRGS 511
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG + T+ +++ + GV V + L+ + Q + ++GFAF+ F A A
Sbjct: 234 VFVGGLDKDATESDLRKAFGEVGV--VTEVRLMMNPQTKK-NKGFAFLRFETVEQAKRAV 290
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
L+ P V+ G K P ++ D T++L + W + +++++K Y
Sbjct: 291 AELKNP-VING------KQCGVTPSQDSD--------TLYLGNICKTWTKEALKEKLKHY 335
Query: 153 G--DVIRIVLARNMS-TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201
G +V + L + + K + + F++F + A+ + ++ G K
Sbjct: 336 GVTNVEDLTLVEDTNDEGKNRGFAFLEFPSRSEAMDAFKRLQRRDVVFGVDK 387
>gi|358344177|ref|XP_003636168.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355502103|gb|AES83306.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 824
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 153/217 (70%), Gaps = 2/217 (0%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GK+CG PS+D+DTL++GNIC TWTKEA+K+KLK YGV VE+I LV D +G +RG
Sbjct: 281 INGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRG 340
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ FS DAM A+KRLQK DV FG ++ KV+FA+ +P EIM+ VKTVF+D +
Sbjct: 341 FAFLEFSSRSDAMDAFKRLQKRDVTFGV-DKPAKVSFADSFIDPGDEIMSQVKTVFIDAL 399
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PP W E+ +R+ +K YG+V +I LARNM A+RKDYGF+ F +H+AA+ C ++I E
Sbjct: 400 PPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCADSITGTELG 459
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSS 233
+G+ K K+RARLS P+ + + G G +R GS+
Sbjct: 460 EGDKKAKVRARLSRPLQRGRGKHVG-RGDYRPSRGSA 495
>gi|356531832|ref|XP_003534480.1| PREDICTED: uncharacterized protein LOC100811387 [Glycine max]
Length = 778
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 159/229 (69%), Gaps = 9/229 (3%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GKRCG PS+D+DTL++GNIC TW KEA+K+KLK YGVE VE++ L+ D +EG++RG
Sbjct: 258 INGKRCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVEDVEDLTLIEDDTNEGMNRG 317
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ FS DA AYKRLQK DV FG ++ KV+FA+ + EIMA VKTVF+D +
Sbjct: 318 FAFLEFSSRSDAKEAYKRLQKRDVAFG-VDKPAKVSFADSFIDLGDEIMAQVKTVFIDSL 376
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PP W E+ +RD +K YG++ ++ LA++M A+RK+YGF+ FSTH AAV C ++I +
Sbjct: 377 PPSWNEDYVRDLLKKYGEIEKVELAKDMPAARRKNYGFVTFSTHVAAVECADSITSAGLG 436
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGR 245
+G+ K K+RARLS P+ K ++ G G + HG R+ GR SGR
Sbjct: 437 EGDKKAKVRARLSRPLSK--PLQRGR--GKYVNHGDFRS----GRNSGR 477
>gi|168042168|ref|XP_001773561.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675100|gb|EDQ61599.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 309
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 96/187 (51%), Positives = 138/187 (73%), Gaps = 1/187 (0%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
+I G+ C PSE+NDTL +GNI +W KE + + LK +E +E + L+ D Q EGL+R
Sbjct: 117 EIRGRECTAKPSEENDTLHLGNINKSWKKEMVMETLKSLCIERIEELTLMEDPQVEGLNR 176
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
GFAF+ FS H DA+ A+++LQ+PD +FG +R+ KVA+A+PL EPD + M+ VK+VF+DG
Sbjct: 177 GFAFIEFSTHKDALEAFRKLQQPDAIFG-ADRSAKVAWAQPLYEPDEDTMSQVKSVFVDG 235
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+PP W+E +R+ YG++ RIVLARNM +AKRKD+GF++F +AA+ACI+A+NN E
Sbjct: 236 MPPTWEEVNVREHFGKYGEIERIVLARNMLSAKRKDFGFVNFVERDAALACIDALNNTEI 295
Query: 196 SDGNSKV 202
DG+ KV
Sbjct: 296 IDGDIKV 302
>gi|168034648|ref|XP_001769824.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678933|gb|EDQ65386.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 281
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 95/188 (50%), Positives = 139/188 (73%), Gaps = 1/188 (0%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
+I G+ CG PSE+NDTLF+GNI W KE + + LK + +E VE+I L+ D Q EG++R
Sbjct: 83 EIRGRSCGVLPSEENDTLFLGNISKLWKKETVLETLKKFAIENVEDITLMEDPQLEGVNR 142
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
GFAF+ F+ H +A+ A++RLQ+ D VFG +R+ K+A+A+PL EPD +IM+ VK+VF+DG
Sbjct: 143 GFAFIEFNTHKEALNAFRRLQQADAVFG-TDRSAKIAWAQPLNEPDEDIMSQVKSVFVDG 201
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+PP W E ++++ YG V RIVLARNM +AKRKD+GF+++ +AA+ CI+A+NN E
Sbjct: 202 MPPTWDERKVKELFNKYGAVERIVLARNMLSAKRKDFGFVNYVERDAALLCIDALNNTEI 261
Query: 196 SDGNSKVK 203
S + KV+
Sbjct: 262 SYEDIKVE 269
>gi|356568565|ref|XP_003552481.1| PREDICTED: uncharacterized protein LOC100808583 [Glycine max]
Length = 785
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 115/229 (50%), Positives = 158/229 (68%), Gaps = 9/229 (3%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GK+CG PS+D+DTL++GNIC TW KEA+K+KLK YGVE VE++ L+ D +EG++RG
Sbjct: 264 INGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVENVEDLTLIEDGTNEGMNRG 323
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ FS DA AY+RLQK DV FG ++ KV+FA+ + EIMA VKTVF+D +
Sbjct: 324 FAFLEFSSRSDAKEAYRRLQKRDVAFG-VDKPAKVSFADSFIDLGDEIMAQVKTVFVDSL 382
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PP W E +RD +K YG++ +I LA++M A+RK+YGF+ FSTH AAV C ++I +
Sbjct: 383 PPSWDEVYVRDLLKKYGEIEKIELAKDMPAARRKNYGFVTFSTHAAAVECADSITSAGLG 442
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGR 245
+G+ K K+RARLS P+ K ++ G G + HG R+ GR SGR
Sbjct: 443 EGDKKAKVRARLSRPLSK--PLQRGR--GKHVNHGDFRS----GRNSGR 483
>gi|168060688|ref|XP_001782326.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666185|gb|EDQ52846.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 351
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 94/191 (49%), Positives = 137/191 (71%), Gaps = 1/191 (0%)
Query: 12 FPLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 71
F +I G++C PSE+NDTL +GNI +W KE + + LK +E +E + L+ D Q E
Sbjct: 117 FETVEIRGRQCTAKPSEENDTLHLGNINKSWKKEMVLETLKSLSIESIEELTLMEDPQVE 176
Query: 72 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 131
G++RGFAF+ FS H DA+ A+++LQ+PD +FG ER+ KVA+A+PL EPD + M+ VK+V
Sbjct: 177 GVNRGFAFIEFSTHKDALDAFRKLQQPDAIFG-TERSAKVAWAQPLYEPDEDTMSQVKSV 235
Query: 132 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191
F+DG+P W+E +R+ YG++ RIVLARNM +AKRKD+GF+++ AA+ CI+A+N
Sbjct: 236 FVDGMPLTWEEGNVREHFGKYGEIERIVLARNMLSAKRKDFGFVNYMERNAALTCIDALN 295
Query: 192 NKEFSDGNSKV 202
N E DG+ KV
Sbjct: 296 NTEIIDGDMKV 306
>gi|296089276|emb|CBI39048.3| unnamed protein product [Vitis vinifera]
Length = 400
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 138/208 (66%), Gaps = 2/208 (0%)
Query: 12 FPLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 71
+P +ICGK+CGTAP E NDT+F+GNI W E + + L++ G++ ++ + ++ D +
Sbjct: 29 YPKIEICGKQCGTAPVEGNDTIFLGNIDKNWKNEDVVKLLQEIGIDKIDKVTVMVDPSNI 88
Query: 72 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 131
+RGFAF+ + DA AYK+LQK DV H + +KVA+AEPL EPD + M VKTV
Sbjct: 89 ERNRGFAFLELETNKDAQLAYKKLQKKDVFGKH--QNIKVAWAEPLNEPDEDEMLKVKTV 146
Query: 132 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191
+ + +P W+E ++RD K +G++ +VLARN+ ++KRKD+ F+ ++T EAA+ CI + +
Sbjct: 147 YAEYIPSSWEEEKVRDCFKKFGEIESVVLARNLRSSKRKDFAFVKYTTREAALECIESFS 206
Query: 192 NKEFSDGNSKVKLRARLSNPMPKTQAVK 219
+ D KVK++ L+ P+PK + +K
Sbjct: 207 REPLHDAECKVKVKVSLAKPIPKGKQIK 234
>gi|225439260|ref|XP_002263631.1| PREDICTED: uncharacterized protein LOC100254786 [Vitis vinifera]
Length = 770
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 138/208 (66%), Gaps = 2/208 (0%)
Query: 12 FPLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 71
+P +ICGK+CGTAP E NDT+F+GNI W E + + L++ G++ ++ + ++ D +
Sbjct: 392 YPKIEICGKQCGTAPVEGNDTIFLGNIDKNWKNEDVVKLLQEIGIDKIDKVTVMVDPSNI 451
Query: 72 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 131
+RGFAF+ + DA AYK+LQK DV H + +KVA+AEPL EPD + M VKTV
Sbjct: 452 ERNRGFAFLELETNKDAQLAYKKLQKKDVFGKH--QNIKVAWAEPLNEPDEDEMLKVKTV 509
Query: 132 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191
+ + +P W+E ++RD K +G++ +VLARN+ ++KRKD+ F+ ++T EAA+ CI + +
Sbjct: 510 YAEYIPSSWEEEKVRDCFKKFGEIESVVLARNLRSSKRKDFAFVKYTTREAALECIESFS 569
Query: 192 NKEFSDGNSKVKLRARLSNPMPKTQAVK 219
+ D KVK++ L+ P+PK + +K
Sbjct: 570 REPLHDAECKVKVKVSLAKPIPKGKQIK 597
>gi|326501766|dbj|BAK02672.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 682
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 135/197 (68%), Gaps = 2/197 (1%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GK CG + DN+TL + NIC W+KE + +KLK + +E +E+INL+ +G +RG
Sbjct: 169 IKGKACGICKNNDNETLHLRNICFDWSKEDLAEKLKTFELENLEDINLIEHPDRKGRNRG 228
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
+AF+ FS HVDA+A + +LQK D+ G R +++F+ + + D ++M VK+VFLDG+
Sbjct: 229 YAFLDFSSHVDAVAGFLKLQKRDLFLGTDVR-AQISFSNTISQDD-KVMEKVKSVFLDGL 286
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PPHW E+ +R++ +G++ I LARNM TAKRKD+GFI F+T +AA+ CI+ +N F
Sbjct: 287 PPHWDEDDVREKFGKFGEIDNIQLARNMFTAKRKDFGFISFTTRQAALGCIDMVNKGRFG 346
Query: 197 DGNSKVKLRARLSNPMP 213
+G+ K++++A L P P
Sbjct: 347 EGSGKIRMKATLQRPKP 363
>gi|357122936|ref|XP_003563169.1| PREDICTED: uncharacterized protein LOC100842213 [Brachypodium
distachyon]
Length = 691
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/198 (42%), Positives = 135/198 (68%), Gaps = 2/198 (1%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
+I GK CG + DN+TL + NIC W+K+ + + LK + +E +E+INL+ +G +R
Sbjct: 176 KIKGKACGICKNNDNETLHLRNICFDWSKDDLAENLKTFELENLEDINLIEHPDRKGKNR 235
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
G+AF+ FS HVDA+A + +LQK D+ G + +++F+ + + D ++M VK+VFLDG
Sbjct: 236 GYAFLDFSSHVDAVAGFLKLQKRDLYLG-TDIKAQISFSNTISQDD-KVMEKVKSVFLDG 293
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+PPHW E+ +R++ +G++ I LARNM TAKRKD+GFI F+T +AA+ CI+ +N F
Sbjct: 294 LPPHWDEDDVREKFGKFGEIDNIQLARNMFTAKRKDFGFISFTTRQAAIDCIDMVNKGRF 353
Query: 196 SDGNSKVKLRARLSNPMP 213
+G+ KV+++A L P P
Sbjct: 354 GEGSGKVRMKATLQRPKP 371
>gi|357507979|ref|XP_003624278.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499293|gb|AES80496.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 822
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 98/202 (48%), Positives = 138/202 (68%), Gaps = 3/202 (1%)
Query: 17 ICGKRCGTAPS--EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
I GK+CG + +D+DTL++ NIC +W KEA+K+KLK YGVE +++ L+ D +EG +
Sbjct: 260 INGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDNNEGTN 319
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 134
G AF+ FS H D+ AYKRLQK DVVFG ++ +V+FA + +IMA VKTVF+D
Sbjct: 320 CGCAFLEFSSHSDSKDAYKRLQKTDVVFGV-DKPAEVSFANSFIDLGDDIMAQVKTVFID 378
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+PP W E+ +R +K YG V ++ LA+NM A+RK+YGF+ F TH AAV C +I +
Sbjct: 379 LLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVECAESITSAG 438
Query: 195 FSDGNSKVKLRARLSNPMPKTQ 216
+GN K K+RARLS P+PK +
Sbjct: 439 LGEGNKKAKVRARLSRPLPKVR 460
>gi|124359488|gb|ABN05926.1| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 824
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 98/202 (48%), Positives = 138/202 (68%), Gaps = 3/202 (1%)
Query: 17 ICGKRCGTAPS--EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
I GK+CG + +D+DTL++ NIC +W KEA+K+KLK YGVE +++ L+ D +EG +
Sbjct: 260 INGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDNNEGTN 319
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 134
G AF+ FS H D+ AYKRLQK DVVFG ++ +V+FA + +IMA VKTVF+D
Sbjct: 320 CGCAFLEFSSHSDSKDAYKRLQKTDVVFGV-DKPAEVSFANSFIDLGDDIMAQVKTVFID 378
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+PP W E+ +R +K YG V ++ LA+NM A+RK+YGF+ F TH AAV C +I +
Sbjct: 379 LLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVECAESITSAG 438
Query: 195 FSDGNSKVKLRARLSNPMPKTQ 216
+GN K K+RARLS P+PK +
Sbjct: 439 LGEGNKKAKVRARLSRPLPKVR 460
>gi|357507983|ref|XP_003624280.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499295|gb|AES80498.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 729
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 98/202 (48%), Positives = 138/202 (68%), Gaps = 3/202 (1%)
Query: 17 ICGKRCGTAPS--EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
I GK+CG + +D+DTL++ NIC +W KEA+K+KLK YGVE +++ L+ D +EG +
Sbjct: 260 INGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDNNEGTN 319
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 134
G AF+ FS H D+ AYKRLQK DVVFG ++ +V+FA + +IMA VKTVF+D
Sbjct: 320 CGCAFLEFSSHSDSKDAYKRLQKTDVVFGV-DKPAEVSFANSFIDLGDDIMAQVKTVFID 378
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+PP W E+ +R +K YG V ++ LA+NM A+RK+YGF+ F TH AAV C +I +
Sbjct: 379 LLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVECAESITSAG 438
Query: 195 FSDGNSKVKLRARLSNPMPKTQ 216
+GN K K+RARLS P+PK +
Sbjct: 439 LGEGNKKAKVRARLSRPLPKVR 460
>gi|242043858|ref|XP_002459800.1| hypothetical protein SORBIDRAFT_02g010900 [Sorghum bicolor]
gi|241923177|gb|EER96321.1| hypothetical protein SORBIDRAFT_02g010900 [Sorghum bicolor]
Length = 730
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 162/287 (56%), Gaps = 19/287 (6%)
Query: 5 FLIYILIFPLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 64
F+ + L F QI GK CG + +N+TL V NIC W+K+ + +KL+ + +E ++ INL
Sbjct: 237 FIYWYLNF---QIKGKACGICKNSENETLHVRNICFDWSKDDLAEKLEPFKLENLDRINL 293
Query: 65 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 124
+ + +G +RG+AF+ F HVDA+AA+ +LQK D+ G R ++F+ L + D EI
Sbjct: 294 IEHPEKKGKNRGYAFLDFRTHVDAVAAFVKLQKRDLYLGTDFR-AHISFSNTLSQDD-EI 351
Query: 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 184
M VK+VFLDG+PPHW E+++R+ +G++ I LARNM TAKRKD+GFI F+T ++A+
Sbjct: 352 MEKVKSVFLDGLPPHWDEDKVREMFGKFGEIDSIQLARNMYTAKRKDFGFIGFTTRQSAL 411
Query: 185 ACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSG 244
CI +N +G+ KV ++A L P A K G G R F SG
Sbjct: 412 DCIKMVNKDGVGEGSGKVLIKASLQRPR---HAFKKNSWQGSSSLLGVRRGFVDKSY-SG 467
Query: 245 RAGHHFNRANF---QRGRGFYQHGRNHSSRMGPTEYDFDNRYTEFHG 288
R GHH +R +R H R H S D + R+T G
Sbjct: 468 R-GHHSDRYRHYSPERRSYLDNHSRRHRS------IDVEERHTSMRG 507
>gi|255569500|ref|XP_002525717.1| conserved hypothetical protein [Ricinus communis]
gi|223535017|gb|EEF36700.1| conserved hypothetical protein [Ricinus communis]
Length = 1034
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 132/199 (66%), Gaps = 3/199 (1%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
+ICGK+C AP E NDT+F+GNI WT + + L++ G+E ++ + +++D + G +R
Sbjct: 564 EICGKQCAVAPVEGNDTIFLGNIDKKWTNGDVIKLLQEIGIEKIDKVIVMTDPSNVGRNR 623
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
GFAFV H DA A+K+L K D+ + +KVA+AEPL EPD E + VK+V+ +
Sbjct: 624 GFAFVELETHKDAQIAFKKLHKKDL---GKLQNIKVAWAEPLSEPDEEELLKVKSVYAEY 680
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+PP W E ++R +G++ IVL+RN+ +++RKD+ FI+FST EAA+ACI + ++
Sbjct: 681 LPPSWDEEKLRSYFTKFGEIENIVLSRNLHSSRRKDFAFINFSTREAALACIESFYHETL 740
Query: 196 SDGNSKVKLRARLSNPMPK 214
++ S+V ++ L+ P+PK
Sbjct: 741 TNEGSQVNVKVSLAKPIPK 759
>gi|414589121|tpg|DAA39692.1| TPA: hypothetical protein ZEAMMB73_249765 [Zea mays]
Length = 618
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/275 (37%), Positives = 152/275 (55%), Gaps = 17/275 (6%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I GK CG + + +TL + NIC W+K+ + +KLK + +E ++ INL+ +G +RG
Sbjct: 177 IKGKACGICKNSETETLHLRNICFDWSKDDLAEKLKPFKLENLDRINLIEHPDRKGKNRG 236
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
+AF+ F HVDA+ A+ +LQK D+ G R ++F+ L + D EIM VK+VFLDGV
Sbjct: 237 YAFLDFRTHVDAVEAFVKLQKIDLYLGTDSR-ANISFSNTLSQDD-EIMEKVKSVFLDGV 294
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PPHW E+++R+ +G++ I LARNM TA RKD+GFI F+ ++A+ CI +N
Sbjct: 295 PPHWDEDKVREIFGKFGEIDSIQLARNMFTAARKDFGFIGFTARQSALDCIKMVNKDGVG 354
Query: 197 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR-ANF 255
+G+ KV ++A L P A K G G R F + S GHH +R +F
Sbjct: 355 EGSGKVPIKASLQRPR---HAFKKYSRQGSSSLLGVRRGF--VDKSSSGRGHHSDRYRHF 409
Query: 256 QRGRGFYQ--HGRNHSSRMGPTEYDFDNRYTEFHG 288
R Y H R HS D + R+T G
Sbjct: 410 SPVRRSYSDNHSRRHS-------IDVEERHTSVRG 437
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 83/200 (41%), Gaps = 23/200 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FV + +E + Q L D G +E + LV D + L++GFAFV F+ A A
Sbjct: 112 VFVSGLPQDAAEEDVAQALADAG--DIEEVRLVRDPADQRLNKGFAFVRFAAAWQARWAA 169
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
L+ E T+K + + E + H++ + D W ++ + +++K +
Sbjct: 170 NDLR---------EATIKGKACGICKNSETETL-HLRNICFD-----WSKDDLAEKLKPF 214
Query: 153 G--DVIRIVLARNMS-TAKRKDYGFIDFSTHEAAVACINAINNKEF---SDGNSKVKLRA 206
++ RI L + K + Y F+DF TH AV + + +D + +
Sbjct: 215 KLENLDRINLIEHPDRKGKNRGYAFLDFRTHVDAVEAFVKLQKIDLYLGTDSRANISFSN 274
Query: 207 RLSNPMPKTQAVKGGMSGGF 226
LS + VK G
Sbjct: 275 TLSQDDEIMEKVKSVFLDGV 294
>gi|162459112|ref|NP_001105099.1| RNA recognition water-stress protein1 [Zea mays]
gi|22655529|gb|AAN04093.1| water-stress protein [Zea mays]
Length = 480
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 118/171 (69%), Gaps = 1/171 (0%)
Query: 64 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE 123
L+ + G++RG+A + FS +AM A++ LQK DVVFG +R+ KV+FA+ + D E
Sbjct: 11 LLRTPNNPGMNRGYALLEFSTRPEAMDAFRTLQKRDVVFGV-DRSAKVSFADSYPQVDDE 69
Query: 124 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
IMA V+TVFLDG+PP W E++++ +K YG + ++ LARNM AKRKD+GF+ F TH+ A
Sbjct: 70 IMAQVRTVFLDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTHDNA 129
Query: 184 VACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 234
VAC ++N E +G K K+RARLS P+ + +K G+ G FR+GHG+ R
Sbjct: 130 VACTEGMSNSEIGEGEHKAKVRARLSRPLQRPPRMKHGLRGNFRVGHGAPR 180
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 32 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 91
T+F+ + +W ++ +K+ LK YG +E + L ++ + F FV F H +A+A
Sbjct: 76 TVFLDGLPPSWDEDRVKKYLKKYGA--IEKVELARNMP-AAKRKDFGFVTFDTHDNAVAC 132
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREP 120
+ + ++ G + V+ + PL+ P
Sbjct: 133 TEGMSNSEIGEGEHKAKVRARLSRPLQRP 161
>gi|414586042|tpg|DAA36613.1| TPA: water-stress protein [Zea mays]
Length = 479
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 119/179 (66%), Gaps = 1/179 (0%)
Query: 56 VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 115
V V + + G++RG+A + FS +AM A++ LQK DVVFG +R+ KV+FA+
Sbjct: 2 VSKVLTTYYLLRTNNPGMNRGYALLEFSTRPEAMDAFRTLQKRDVVFGV-DRSAKVSFAD 60
Query: 116 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 175
+ D EIMA V+TVFLDG+PP W E++++ +K YG + ++ LARNM AKRKD+GF+
Sbjct: 61 SYPQVDDEIMAQVRTVFLDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFV 120
Query: 176 DFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 234
F TH+ AVAC ++N E +G K K+RARLS P+ + +K G+ G FR+GHG+ R
Sbjct: 121 TFDTHDNAVACTEGMSNSEIGEGEHKAKVRARLSRPLQRPPRMKHGLRGNFRVGHGAPR 179
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 32 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 91
T+F+ + +W ++ +K+ LK YG +E + L ++ + F FV F H +A+A
Sbjct: 75 TVFLDGLPPSWDEDRVKKYLKKYGA--IEKVELARNMP-AAKRKDFGFVTFDTHDNAVAC 131
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREP 120
+ + ++ G + V+ + PL+ P
Sbjct: 132 TEGMSNSEIGEGEHKAKVRARLSRPLQRP 160
>gi|222636973|gb|EEE67105.1| hypothetical protein OsJ_24114 [Oryza sativa Japonica Group]
Length = 624
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/259 (37%), Positives = 154/259 (59%), Gaps = 12/259 (4%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
+ G+ C ++ N+TL + NIC WTK+ + ++LK Y +E +E+INLV D + +G +RG
Sbjct: 157 VKGEACMICKNDANETLHLRNICFDWTKDDLAEELKTYKLENLEDINLVEDPERKGKNRG 216
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
+AF+ F +VD + A+ +LQ D+ G R +V+F++ L D +IM VK+VFLDG+
Sbjct: 217 YAFLDFRTNVDGVDAFFKLQNRDIYLGTDVR-AQVSFSKTL-SLDDKIMEKVKSVFLDGL 274
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PPHW E+++R+ +G++ I LARNM AKRKD+GFI F++ ++A+ CI+ ++
Sbjct: 275 PPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFGFIGFTSRQSALDCISTVSKGGIV 334
Query: 197 DGNSKVKLRARLSNPMP--KTQAVKG-----GMSGGFRIG--HGSSRTFSRYGRGSGRAG 247
+G+ KV+++A L P P K + +G G+ GF IG +G + R R
Sbjct: 335 EGSGKVRIKASLQRPRPTLKKHSWQGITPMLGIRRGF-IGKSYGDREHYGDRERYDDRER 393
Query: 248 HHFNRANFQRGRGFYQHGR 266
+H RG GF H R
Sbjct: 394 YHNRERYGDRGFGFSGHAR 412
>gi|34395354|dbj|BAC84424.1| water-stress protein-like protein [Oryza sativa Japonica Group]
Length = 465
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 157/261 (60%), Gaps = 14/261 (5%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
+ G+ C ++ N+TL + NIC WTK+ + ++LK Y +E +E+INLV D + +G +R
Sbjct: 156 MVKGEACMICKNDANETLHLRNICFDWTKDDLAEELKTYKLENLEDINLVEDPERKGKNR 215
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
G+AF+ F +VD + A+ +LQ D+ G R +V+F++ L D +IM VK+VFLDG
Sbjct: 216 GYAFLDFRTNVDGVDAFFKLQNRDIYLGTDVRA-QVSFSKTL-SLDDKIMEKVKSVFLDG 273
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+PPHW E+++R+ +G++ I LARNM AKRKD+GFI F++ ++A+ CI+ ++
Sbjct: 274 LPPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFGFIGFTSRQSALDCISTVSKGGI 333
Query: 196 SDGNSKVKLRARLSNPMP--KTQAVKG-----GMSGGFRIG--HGSSRTFSRYGRGSGRA 246
+G+ KV+++A L P P K + +G G+ GF IG +G + R R
Sbjct: 334 VEGSGKVRIKASLQRPRPTLKKHSWQGITPMLGIRRGF-IGKSYGDREHYGDRERYDDRE 392
Query: 247 GHHFNRANF-QRGRGFYQHGR 266
+H NR + RG GF H R
Sbjct: 393 RYH-NRERYGDRGFGFSGHAR 412
>gi|222636546|gb|EEE66678.1| hypothetical protein OsJ_23325 [Oryza sativa Japonica Group]
Length = 345
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 133/220 (60%), Gaps = 4/220 (1%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
+ICGK C A ND +F+GNI W KE + ++LK G+E ++++ L SD + +R
Sbjct: 75 KICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNPVCNR 134
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
GFAF+ DA AYK+L + + FG ++VA+AEPL +PD + M VK++F+DG
Sbjct: 135 GFAFLELETSRDARMAYKKLSQKNA-FGKG-LNIRVAWAEPLNDPDEKDM-QVKSIFVDG 191
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P W Q+++ K +G + +VL+R+M +AKR+D+ FI++ T EAA++C+ + + +EF
Sbjct: 192 IPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREAAISCLESFDKEEF 251
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRT 235
S SKV ++ L+ P +++ K G G +T
Sbjct: 252 SKNGSKVNIKVSLAKPAQQSKQTKEDHKSSI-TGEGKMKT 290
>gi|34393486|dbj|BAC83046.1| putative RRM RNA binding protein NSAP1 [Oryza sativa Japonica
Group]
Length = 613
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 133/220 (60%), Gaps = 4/220 (1%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
+ICGK C A ND +F+GNI W KE + ++LK G+E ++++ L SD + +R
Sbjct: 301 KICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNPVCNR 360
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
GFAF+ DA AYK+L + + FG ++VA+AEPL +PD + M VK++F+DG
Sbjct: 361 GFAFLELETSRDARMAYKKLSQKNA-FGK-GLNIRVAWAEPLNDPDEKDM-QVKSIFVDG 417
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P W Q+++ K +G + +VL+R+M +AKR+D+ FI++ T EAA++C+ + + +EF
Sbjct: 418 IPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREAAISCLESFDKEEF 477
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRT 235
S SKV ++ L+ P +++ K G G +T
Sbjct: 478 SKNGSKVNIKVSLAKPAQQSKQTKEDHKSSI-TGEGKMKT 516
>gi|297725433|ref|NP_001175080.1| Os07g0180800 [Oryza sativa Japonica Group]
gi|255677562|dbj|BAH93808.1| Os07g0180800 [Oryza sativa Japonica Group]
Length = 650
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 133/220 (60%), Gaps = 4/220 (1%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
+ICGK C A ND +F+GNI W KE + ++LK G+E ++++ L SD + +R
Sbjct: 301 KICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNPVCNR 360
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
GFAF+ DA AYK+L + + FG ++VA+AEPL +PD + M VK++F+DG
Sbjct: 361 GFAFLELETSRDARMAYKKLSQKNA-FGKG-LNIRVAWAEPLNDPDEKDM-QVKSIFVDG 417
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P W Q+++ K +G + +VL+R+M +AKR+D+ FI++ T EAA++C+ + + +EF
Sbjct: 418 IPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREAAISCLESFDKEEF 477
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRT 235
S SKV ++ L+ P +++ K G G +T
Sbjct: 478 SKNGSKVNIKVSLAKPAQQSKQTKEDHKSSI-TGEGKMKT 516
>gi|218195457|gb|EEC77884.1| hypothetical protein OsI_17174 [Oryza sativa Indica Group]
Length = 274
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 128/195 (65%), Gaps = 2/195 (1%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
+ G+ C ++ N+TL + NIC WTK+ + ++LK Y +E +E+INLV D + +G +RG
Sbjct: 2 VKGEACMICKNDANETLHLRNICFDWTKDDLAEELKTYKLENLEDINLVEDPERKGKNRG 61
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
+AF+ F +VD + A+ +LQ D+ G R +V+F++ L + D +IM VK+VFLDG+
Sbjct: 62 YAFLDFRTNVDGVDAFFKLQNRDIYLGTDVR-AQVSFSKTLSQDD-KIMEKVKSVFLDGL 119
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
PPHW E+++R+ +G++ I LARNM AKRKD+GFI F++ ++A+ CI+ ++
Sbjct: 120 PPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFGFIGFTSRQSALDCISTVSKGGIV 179
Query: 197 DGNSKVKLRARLSNP 211
+G+ K + S+P
Sbjct: 180 EGSGKGRKLMASSSP 194
>gi|357507981|ref|XP_003624279.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499294|gb|AES80497.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 514
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 17 ICGKRCGTAPS--EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
I GK+CG + +D+DTL++ NIC +W KEA+K+KLK YGVE +++ L+ D +EG +
Sbjct: 260 INGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDNNEGTN 319
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 134
G AF+ FS H D+ AYKRLQK DVVFG ++ +V+FA + +IMA VKTVF+D
Sbjct: 320 CGCAFLEFSSHSDSKDAYKRLQKTDVVFG-VDKPAEVSFANSFIDLGDDIMAQVKTVFID 378
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 192
+PP W E+ +R +K YG V ++ LA+NM A+RK+YGF+ F TH AAV C +I +
Sbjct: 379 LLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVECAESITS 436
>gi|218199186|gb|EEC81613.1| hypothetical protein OsI_25123 [Oryza sativa Indica Group]
Length = 370
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 116/180 (64%), Gaps = 3/180 (1%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
+ICGK C A ND +F+GNI W KE + ++LK G+E ++++ L SD + +R
Sbjct: 75 KICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNPVCNR 134
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
GFAF+ DA AYK+L + + FG ++VA+AEPL +PD E A VK++F+DG
Sbjct: 135 GFAFLELETSRDARMAYKKLSQKNA-FGK-SLNIRVAWAEPLNDPD-EKDAQVKSIFVDG 191
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P W Q+++ K +G + +VL+R+M +AKR+D+ FI++ T EAA++C+ + + +EF
Sbjct: 192 IPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREAAISCLESFDKEEF 251
>gi|116781130|gb|ABK21976.1| unknown [Picea sitchensis]
Length = 219
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 87/113 (76%), Gaps = 1/113 (0%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
Q+ GK CG +PS+DNDTLF+GNIC TWTKEA+++KLK + ++ +E++ LV D ++EG++R
Sbjct: 100 QVNGKVCGISPSQDNDTLFLGNICKTWTKEALREKLKSFSIDNIEDLTLVEDPENEGMNR 159
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV 128
G AF+ FS DAM AYKRLQK DVV G +RT KV+FAE +PD E+MA +
Sbjct: 160 GIAFIEFSARSDAMNAYKRLQKRDVVLG-TDRTAKVSFAETFVDPDEEVMAQI 211
>gi|224060419|ref|XP_002300190.1| predicted protein [Populus trichocarpa]
gi|222847448|gb|EEE84995.1| predicted protein [Populus trichocarpa]
Length = 689
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 123/219 (56%), Gaps = 5/219 (2%)
Query: 17 ICGKRCGTAPSED-NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
I GKRC TA +D + TL+V NIC WTK+ ++ KL +YGV+ E + L +++ +R
Sbjct: 135 INGKRCWTAQIQDGSKTLYVPNICKEWTKDDLEDKLAEYGVKNYEILTLNPARENKEKNR 194
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
G+A + F DA A + L+K +V FG R K F+ + EIM+HVK V+LDG
Sbjct: 195 GYAHLDFRSGKDASEALELLKKENVSFGQ-NRAAKADFSRKYASGNDEIMSHVKRVYLDG 253
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P W+E ++ +K +G ++++ LAR++ +A R +Y ++ F THEAA C+N +N
Sbjct: 254 IPRAWREEHVKKHLKEFGRIVKVELARHIPSAIRTNYCYVTFETHEAAATCVNGVNVDGL 313
Query: 196 SDGNSKVKLRARLSNP---MPKTQAVKGGMSGGFRIGHG 231
+ +V A L+ P +P + S IG G
Sbjct: 314 YFRDKRVNAWADLAKPRVRIPSEGTAQASSSVAQEIGLG 352
>gi|440796160|gb|ELR17269.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 1122
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 108/173 (62%), Gaps = 2/173 (1%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
+ G++ G S DN TLF+G++ W ++ + Q L+D ++GV I L+ D + +RG
Sbjct: 467 LKGRKVGVVHSNDNQTLFLGHLDKDWRQDDLDQHLRDAKIKGVTTITLMKDTTNMARNRG 526
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAFV FS H +A A+ ++ KP F + VKV +AEPL EP E+M+ VK++++ +
Sbjct: 527 FAFVEFSSHEEAAKAHAKIMKPG--FRLADVDVKVDWAEPLNEPSEEVMSKVKSIYVCNL 584
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 189
P ++ IR +G++ RIVL++N+ +A+R D+ F++++ AA+A I+A
Sbjct: 585 PVDVNDDLIRSLFAEFGEIERIVLSKNLKSARRDDFAFVNYTERSAALAAIDA 637
>gi|242047592|ref|XP_002461542.1| hypothetical protein SORBIDRAFT_02g004470 [Sorghum bicolor]
gi|241924919|gb|EER98063.1| hypothetical protein SORBIDRAFT_02g004470 [Sorghum bicolor]
Length = 551
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 109/199 (54%), Gaps = 3/199 (1%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
+IC K C + ND + + NI W KE I + L GVE ++ + L++D + G +
Sbjct: 332 KICWKLCQVEAVDGNDKIVLENIDKKWKKEDIMKLLHKTGVENIDKVTLMADCDNPGYNC 391
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
G+AF+ DA AY +L + V + VA+A+ + + D E M VK++F++G
Sbjct: 392 GYAFLELETERDAWMAYIKLSRKGVFRRC--LNITVAWAKAMSDRDEE-MQQVKSIFVEG 448
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P W ++ + YG + R VL+ ++ +AKR D+ F+ ++THEAA+ C+ + +E
Sbjct: 449 IPESWDNLKLTEIFSKYGVIQRTVLSHDIQSAKRSDFAFVHYTTHEAAILCLELFDKEEL 508
Query: 196 SDGNSKVKLRARLSNPMPK 214
+ SKV ++ L P+ K
Sbjct: 509 TGNGSKVNIKVSLDKPVRK 527
>gi|224133754|ref|XP_002327672.1| predicted protein [Populus trichocarpa]
gi|222836757|gb|EEE75150.1| predicted protein [Populus trichocarpa]
Length = 142
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 88/132 (66%), Gaps = 3/132 (2%)
Query: 272 MGPTEYDFDNRYTEFHGRQFIGRGGRSFRGGYNAPSRAAAGAGPSRSNPTRLWPDGPDRG 331
M P EYD+++RY HGRQ RG GGY+ R AGPSRSN R W D P+RG
Sbjct: 1 MVPHEYDYNDRYDMLHGRQGGRRGTFR--GGYHTAGRGMT-AGPSRSNMNRAWHDIPERG 57
Query: 332 YGEHHSYRRQPFSQGEDFDRPFIGRQVDDPYFYDDRAHGVKRSFHVMDHEPDYMGPRRFR 391
+ +H S RRQPFS E FDR F+GR DDPYFYDD HG+KR F++ D +PDYM P R R
Sbjct: 58 HRDHVSSRRQPFSPEEAFDRRFVGRHFDDPYFYDDGPHGMKRPFYMTDQDPDYMEPSRLR 117
Query: 392 PRLDYNDPVIPF 403
PRLDY+DP + +
Sbjct: 118 PRLDYSDPRLDY 129
>gi|440796577|gb|ELR17686.1| RNA recognition motif (RRM)containing protein [Acanthamoeba
castellanii str. Neff]
Length = 868
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 104/188 (55%), Gaps = 2/188 (1%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
I G+ G S+DN +LFVG+I W+ E ++ LK+ G+ GV++I D + +RG
Sbjct: 332 IMGRPVGVLVSQDNQSLFVGHISQDWSLEQLEAHLKEAGIRGVDHIIFQHDPMNPTRNRG 391
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F F+ F H +A A+ ++ + D F + V+V +AEPL EP ++M+ VK++++ +
Sbjct: 392 FVFIEFKSHHEAARAHGKMTRAD--FRLSGQKVRVDWAEPLNEPGEDVMSQVKSIYVANL 449
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
P I YG + RIVL++N+ TA+RKD+ F+++ A+ I+ + E
Sbjct: 450 PLEVDNELITTLFGEYGKIERIVLSKNLPTARRKDFAFVNYEERANALKAIDGKHGFEVQ 509
Query: 197 DGNSKVKL 204
+V L
Sbjct: 510 GRTLQVTL 517
>gi|148909314|gb|ABR17756.1| unknown [Picea sitchensis]
Length = 344
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 114 AEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYG 173
A+PL +PD ++M VK+VF+DG+ P W E ++++ +G++ R+VLA N+ +AKRKD+G
Sbjct: 33 AQPLNDPDEDVMEQVKSVFVDGLQPTWNEEKVKEHFGKFGEIERVVLACNIQSAKRKDFG 92
Query: 174 FIDFSTHEAAVACINAIN-NKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
F++++T EAA+ACI A + + E DG+SKVK++ L+ P K + KG G
Sbjct: 93 FVNYTTREAAIACIEAFSKDDELIDGDSKVKVKVSLAKPSHKGKLRKGKSKG 144
>gi|3341691|gb|AAC27473.1| putative heterogeneous nuclear ribonucleoprotein [Arabidopsis
thaliana]
Length = 300
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 96/170 (56%), Gaps = 3/170 (1%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG++ ++E +K+ G V + ++ + Q + S+G AF+ F+ A A
Sbjct: 131 IFVGSLDKGASEEDLKKVFGHVG--EVTEVRILKNPQTKK-SKGSAFLRFATVEQAKRAV 187
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
K L+ +++ ++ + ++ VKT+F+DG+ P W E ++RD +K Y
Sbjct: 188 KELKNTELLIVGESIISNLSILLIVISFMIFLVLQVKTIFIDGLLPSWNEERVRDLLKPY 247
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202
G + ++ LARNM +A+RKD+GF+ F THEAAV+C INN E +G KV
Sbjct: 248 GKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFINNSELGEGEDKV 297
>gi|449676978|ref|XP_002157894.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Hydra
magnipapillata]
Length = 623
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 16/207 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S+ N+ LFVG+I + TK+ I + VE + ++ + + + +RGFA
Sbjct: 233 GKTLGVCLSQANNRLFVGSIPKSKTKQQIFDEFASK-VENLSDVIVYISSEDKSKNRGFA 291
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ F+ H DA A +R + VFG+ TV +A+P+ EPD +M+ VK V++ +
Sbjct: 292 FLEFTTHKDASLARRRFMTGRIKVFGNITPTVD--WADPVEEPDDNVMSKVKVVYVRNLS 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
P +E ++ + K YG V ++ K KDY FI F + AV I +N ++ D
Sbjct: 350 PAIEETKLNELFKQYGAVEKV--------KKLKDYAFIHFVNRDDAVRAIEELNGQDLDD 401
Query: 198 GNSKVKLRARLSNPMPKTQAVKGGMSG 224
+K+ L+ P + + + G SG
Sbjct: 402 ----LKIEVSLAKPQTEKKEARRGQSG 424
>gi|328876236|gb|EGG24599.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 497
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 98/179 (54%), Gaps = 3/179 (1%)
Query: 9 ILIFPLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDI 68
++ F K+ GK SE+ +F+GN+ K+ + L D+ +G+ N++ ++D
Sbjct: 170 VVQFNNKEFKGKNLRVKFSENKRKIFIGNLPKELKKDQLLLILADHS-DGITNVDFLTDP 228
Query: 69 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV 128
+ +RGFAF+ ++ + A A K +P+ G+ V V +A+P++EPD IM V
Sbjct: 229 DNSSRNRGFAFIEYTDYYQAEKARKEFSQPNFKIGNC--NVTVNWADPIQEPDETIMNQV 286
Query: 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
+ +++ +P E Q+R + YG + ++++ N+ +R+D+GF+ F+ + A A +
Sbjct: 287 RVLYIRNLPDSKSEEQVRKLFEEYGVIEKVIIPNNLPGQQRRDFGFVHFANRDEAEATL 345
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
VF+ G+ + E +++D G+V ++ + ++ S + K YGF+ F+ +
Sbjct: 114 VFVGGIARNTTEEELQDLFSTIGNVKQVRIMKDRSNGENKGYGFVSFANKSNCKEAVVQF 173
Query: 191 NNKEFSDGNSKVK 203
NNKEF N +VK
Sbjct: 174 NNKEFKGKNLRVK 186
>gi|156377784|ref|XP_001630826.1| predicted protein [Nematostella vectensis]
gi|156217854|gb|EDO38763.1| predicted protein [Nematostella vectensis]
Length = 587
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 16/207 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GKR G S N LFVG+I T +K+ I ++ G++++ + +G +RGFA
Sbjct: 221 GKRLGVCISVANSRLFVGSIPKTKSKQEILEEFSKV-TNGLDDVIVYLSADQKGKNRGFA 279
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL + V+G+ V V +A+P EPD + M VK V+L +
Sbjct: 280 FLEYESHQAASLARRRLASGRIKVWGNI--VVTVDWADPQEEPDDDAMKKVKVVYLRNLS 337
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
P E +++++ YG V R+ K KDY F+ F+ + A+ I + KE D
Sbjct: 338 PSITEEKLKEEYSQYGAVDRV--------KKLKDYAFVHFTERDHALKAIEETDGKEM-D 388
Query: 198 GNSKVKLRARLSNPMPKTQAVKGGMSG 224
G +K+ A L+ P P + + G SG
Sbjct: 389 G---LKIEASLAKPQPGNKDRQRGQSG 412
>gi|168039508|ref|XP_001772239.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676409|gb|EDQ62892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 507
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 7/205 (3%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
++ G++ + S+ LFVGNI TW KE ++ L + G G++++ L+ D + G +R
Sbjct: 190 EVKGRKLRFSQSQSKHRLFVGNIPKTWEKEELESVLSEQG-PGIQSVELLKDPKTPGRNR 248
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
GF FV + H A A + + K G T+ ++A+P PD M+ VK V++
Sbjct: 249 GFGFVEYYNHACAEHARREMSKSSFRLGTNAPTI--SWADPRSGPDVSAMSQVKVVYVRN 306
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P E Q++ + +G+++++VL ++D+GF+ FS A + AI E
Sbjct: 307 LPDSVTEEQLQKLFERHGEIVKVVLPATKPGQAKRDFGFVHFSDRAQA---LKAIEKTEV 363
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKG 220
+ ++ L L+ P + +A G
Sbjct: 364 YELEGRI-LETSLAKPPAEKRAAGG 387
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 46/119 (38%), Gaps = 17/119 (14%)
Query: 111 VAFAEPLREPDPEIMA-------HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARN 163
VA E E D E H +F+ G+ E +R GDV + L ++
Sbjct: 100 VAIVEDKEEKDAEKSGDLLKRPPHGSEIFVGGITRDTTEEDLRTLCSSCGDVYEVRLLKD 159
Query: 164 MSTAKRKDYGFIDFSTHEAAVACINAINNKE-------FSDGNSKVKLRARLSNPMPKT 215
T + K Y F+ F E A I +N+ E FS SK +L +PKT
Sbjct: 160 KDTGQNKGYAFVTFLNEECAEKAIETLNDSEVKGRKLRFSQSQSKHRL---FVGNIPKT 215
>gi|414871238|tpg|DAA49795.1| TPA: hypothetical protein ZEAMMB73_765896 [Zea mays]
Length = 468
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 86/164 (52%), Gaps = 15/164 (9%)
Query: 128 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
VK+VFLDGVPPHW E+++R+ + +G++ I LARNM TA RKD+GFI F+ ++A+ CI
Sbjct: 121 VKSVFLDGVPPHWDEDKVREIFRKFGEIDSIQLARNMFTAARKDFGFIGFTARQSALDCI 180
Query: 188 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 247
+N +G+ KV ++A L P A K G G R F + S G
Sbjct: 181 KMVNKDGVGEGSGKVPIKASLQRPR---HAFKKYSRQGSSSLLGVRRGF--VDKSSSGRG 235
Query: 248 HHFNR-ANFQRGRGFYQ--HGRNHSSRMGPTEYDFDNRYTEFHG 288
HH +R +F R Y H R HS D + R+T G
Sbjct: 236 HHSDRYRHFSPVRHSYSDNHSRRHS-------IDVEERHTSVRG 272
>gi|225453602|ref|XP_002264834.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
gi|296088998|emb|CBI38701.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 114/256 (44%), Gaps = 23/256 (8%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K+ G+ + SE LF+GN+ +WT + ++ ++D G G ENI L+ D Q+ +
Sbjct: 165 KEFKGRTIRCSLSESKHRLFIGNVPKSWTDDEFRKVIEDIGP-GAENIELIKDPQNPSRN 223
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 134
RGFAFV + + +A A Y R + F T V++A+P D A VK +++
Sbjct: 224 RGFAFVEY--YNNACADYGRQKMSSSNFKLDGNTPTVSWADPKSTSDHSAAAQVKALYVK 281
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+P + Q+++ + +G+V ++V+ S ++D+GFI F+ +A+ + E
Sbjct: 282 NIPENTTTEQLKELFQRHGEVTKVVMPPAKSGQSKRDFGFIHFAERSSALKAVKDTEKHE 341
Query: 195 FSDGNSKVKLRARLSN-----------------PMPKTQAVKGGMSGGFRIGHGSSRTFS 237
V L S+ P P G G G+G S F
Sbjct: 342 IDGQALDVSLAKPQSDKKFEGVHPYSSGHPNFLPHPGYGGFGGNPYGSLGPGYGVSAPFQ 401
Query: 238 R---YGRGSGRAGHHF 250
+ YGRG AG H
Sbjct: 402 QPVIYGRGPMPAGMHM 417
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 106 ERTVKVAFAEPLREPDPEIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLAR 162
E + E +E +++A H +F+ G+P E +RD + G+ + + L +
Sbjct: 75 EENPTASVDEDEKEKHAQLLALPPHGSEIFIGGLPREALEEDLRDLCEPIGEALEVRLMK 134
Query: 163 NMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
N + + K Y FI F T E A I +++KEF
Sbjct: 135 NRDSGESKGYAFISFKTKEIAQKAIEELHSKEF 167
>gi|47219493|emb|CAG10857.1| unnamed protein product [Tetraodon nigroviridis]
Length = 629
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 17/180 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK G S N+ LFVG+I T+E+I L+D+G EG++ + L + +RG
Sbjct: 232 GKYLGVCISVANNRLFVGSIPKNKTRESI---LEDFGKVTEGLQEVILYQQPDDKKKNRG 288
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL V V+G+P V V +A+P+ EPDPE+MA VK +F+
Sbjct: 289 FCFLEYEDHKSAAQARRRLMSGKVKVWGNP---VTVEWADPVAEPDPEVMAKVKVLFVRN 345
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E + +G + R+ K KDY F+ F +AAV ++ +N KE
Sbjct: 346 LATAVTEELLEKTFAQFGKLERV--------KKLKDYAFVHFEERDAAVRAMDEMNGKEV 397
>gi|432881549|ref|XP_004073835.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Oryzias
latipes]
Length = 633
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 17/180 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK G S N+ LFVG+I T+E+I L+D+G EG++++ L + +RG
Sbjct: 236 GKYLGVCISVANNRLFVGSIPKNKTRESI---LEDFGKVTEGLQDVILYHQPDDKKKNRG 292
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL V V+G+P V V +A+P+ EPDPE+MA VK +F+
Sbjct: 293 FCFLEYEDHKSAAQARRRLMSGKVKVWGNP---VTVEWADPVAEPDPEVMAKVKVLFVRK 349
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E + +G + R+ K KDY F+ F +AAV + +N KE
Sbjct: 350 LATAVTEELLEKTFSQFGKLERV--------KKLKDYAFVHFEERDAAVQAMEGMNGKEL 401
>gi|410911698|ref|XP_003969327.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Takifugu
rubripes]
Length = 629
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 17/180 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK G S N+ LFVG+I T+E+I L+D+G EG++ + L + +RG
Sbjct: 232 GKYLGVCISVANNRLFVGSIPKNKTRESI---LEDFGKVTEGLQEVILYQQPDDKKKNRG 288
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL V V+G+P V V +A+P+ EPDPE+MA VK +F+
Sbjct: 289 FCFLEYEDHKSAAQARRRLMSGKVKVWGNP---VTVEWADPVAEPDPEVMAKVKVLFVRN 345
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E + +G + R+ K KDY F+ F +AAV ++ +N KE
Sbjct: 346 LATAVTEELLEKTFAQFGKLERV--------KKLKDYAFVHFEERDAAVRAMDEMNGKEV 397
>gi|348529965|ref|XP_003452482.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Oreochromis
niloticus]
Length = 631
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 92/180 (51%), Gaps = 17/180 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK G S N+ LFVG+I T+E+I L+D+G EG++ + L + +RG
Sbjct: 234 GKYLGVCISVANNRLFVGSIPKNKTRESI---LEDFGKVTEGLQEVILYHQPDDKKKNRG 290
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL V V+G+P V V +A+P+ EPDPE+MA VK +F+
Sbjct: 291 FCFLEYEDHKSAAQARRRLMSGKVKVWGNP---VTVEWADPVAEPDPEVMAKVKVLFVRK 347
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E + +G + R+ K KDY F+ F +AAV + +N KE
Sbjct: 348 LATAVTEELLEKTFSQFGKLERV--------KKLKDYAFVHFEERDAAVKAMEEMNGKEL 399
>gi|223648358|gb|ACN10937.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 635
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 93/181 (51%), Gaps = 17/181 (9%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSR 75
GK G S N+ LFVG+I T+E+I L+D+G EG++ + L + +R
Sbjct: 236 SGKYLGVCISVANNRLFVGSIPKNKTRESI---LEDFGKVTEGLQEVILYHQPDDKKKNR 292
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 134
GF F+ + H A A +RL V V+G+P V V +A+P+ EPDP++MA VK +F+
Sbjct: 293 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNP---VTVEWADPVAEPDPDVMAKVKVLFVR 349
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+ E + +G + R+ K KDY F+ F +AAV ++ +N KE
Sbjct: 350 KLATPVTEELLEKTFSAFGKLERV--------KKLKDYAFVHFEDRDAAVKAMSEMNGKE 401
Query: 195 F 195
Sbjct: 402 L 402
>gi|47212367|emb|CAF89932.1| unnamed protein product [Tetraodon nigroviridis]
Length = 636
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 13/178 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK+ G S N+ LFVG+I + TKE I ++ EG+ ++ L Q + +RGF
Sbjct: 231 GKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLSDVILYLQPQDKSKNRGFC 289
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 290 FLEYEDHKTAAQARRRLMSGKVKVWGN---MVTVEWADPMEDPDPEVMAKVKVLFVRNLA 346
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E + YG++ R+ K KDY FI F + AV + +N KE
Sbjct: 347 NSVTEEILEKAFSEYGNLERV--------KKLKDYAFIHFEERDGAVKALEELNGKEL 396
>gi|410915935|ref|XP_003971442.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Takifugu rubripes]
Length = 637
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 13/178 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK+ G S N+ LFVG+I + TKE I ++ EG+ ++ L Q + +RGF
Sbjct: 235 GKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLSDVILYLQPQDKSKNRGFC 293
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 294 FLEYEDHKTAAQARRRLMSGKVKVWGN---MVTVEWADPMEDPDPEVMAKVKVLFVRNLA 350
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E + YG++ R+ K KDY FI F + AV + +N KE
Sbjct: 351 NSVTEEILEKSFSEYGNLERV--------KKLKDYAFIHFEERDGAVKALEEMNGKEL 400
>gi|414867971|tpg|DAA46528.1| TPA: hypothetical protein ZEAMMB73_747315 [Zea mays]
Length = 486
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 58/84 (69%)
Query: 128 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
VK+VFLDGVPPHW E+++R+ +G++ I LARNM TA RKD+GFI F+ ++A+ CI
Sbjct: 143 VKSVFLDGVPPHWDEDKVREIFGEFGEIDSIQLARNMFTAARKDFGFIGFTARQSALDCI 202
Query: 188 NAINNKEFSDGNSKVKLRARLSNP 211
+N +G+ KV ++A L P
Sbjct: 203 KMVNKDGVGEGSGKVPIKASLQRP 226
>gi|357512617|ref|XP_003626597.1| RNA-binding protein [Medicago truncatula]
gi|355501612|gb|AES82815.1| RNA-binding protein [Medicago truncatula]
Length = 479
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 101/187 (54%), Gaps = 6/187 (3%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K+ GK SE LF+GNI TWT++ ++ ++ G GVE+I+L+ D Q++ +
Sbjct: 168 KEFKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVG-PGVESIDLIKDPQNQSRN 226
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA-HVKTVFL 133
RGFAFV++ + +A A + R + V F T V +A+P PD A VK +++
Sbjct: 227 RGFAFVLY--YNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKALYV 284
Query: 134 DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
+P + Q+++ + +G+V ++V+ ++ KR D+GFI ++ +A+ +
Sbjct: 285 KNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKR-DFGFIHYAERSSALKAVKETEKY 343
Query: 194 EFSDGNS 200
E DG +
Sbjct: 344 EI-DGQA 349
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 103 GHPERTVKVAFA-EPLREPDPEIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRI 158
G E +K A E RE E+++ H VF+ G+P ++ +R+ + GD++ I
Sbjct: 74 GAEEDELKPALIDEEEREKHDELLSRPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEI 133
Query: 159 VLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN-----SKVKLRARLSNPMP 213
L ++ T + K Y F+ + T E A I+ I+NKEF S+ K R + N +P
Sbjct: 134 KLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETKHRLFIGN-IP 192
Query: 214 KT 215
KT
Sbjct: 193 KT 194
>gi|223649064|gb|ACN11290.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 631
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 92/180 (51%), Gaps = 17/180 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK G S N+ LFVG+I T+E+I L+D+G EG++ + L + +RG
Sbjct: 236 GKYLGVCISVANNRLFVGSIPKNKTRESI---LEDFGKVTEGLQEVILYHQPDDKKKNRG 292
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL V V+G+P V V +A+P+ EPDP++MA VK +F+
Sbjct: 293 FCFLEYEDHKSAAQARRRLMSGKVKVWGNP---VTVEWADPVAEPDPDVMAKVKVLFVRK 349
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E + +G + R+ K KDY F+ F +AAV + +N KE
Sbjct: 350 LAIPVTEELLEKTFSAFGKLERV--------KKLKDYAFVHFEDRDAAVKAMAEMNGKEL 401
>gi|223648796|gb|ACN11156.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 633
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 17/189 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK G S N+ LFVG+I T+E+I L+D+ EG+ + L + +RG
Sbjct: 234 GKYLGVCISVANNRLFVGSIPKNKTRESI---LEDFSKVTEGLMEVILYHQPDDKKKNRG 290
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL V V+G+P V V +A+P+ EPDPEIMA VK +F+
Sbjct: 291 FCFLEYEDHKSAAQARRRLMSGKVKVWGNP---VTVEWADPVDEPDPEIMAKVKVLFVRN 347
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E + +G + R+ K KDY F+ F +AAV + +N KE
Sbjct: 348 LATPVTEELLEKTFSQFGKLERV--------KKLKDYAFVHFEDRDAAVKAMQEMNCKEL 399
Query: 196 SDGNSKVKL 204
++ L
Sbjct: 400 EGEEIEIVL 408
>gi|356506096|ref|XP_003521823.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 100/199 (50%), Gaps = 4/199 (2%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K+ GK + SE LF+GN+ TWT++ ++ ++ G GVE I L+ D Q+ +
Sbjct: 170 KEFKGKTLRCSLSETKHRLFIGNVPKTWTEDDFRKVVEGVG-PGVETIELIKDPQNPSRN 228
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 134
RGFAFV++ + +A A Y R + F T V +A+P PD + VK +++
Sbjct: 229 RGFAFVLY--YNNACADYSRQKMASSSFKLDGNTPTVTWADPKNSPDHSASSQVKALYVK 286
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+P + Q+++ + +G+V ++V+ + KR D+GFI ++ +A+ + E
Sbjct: 287 NIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKR-DFGFIHYAERSSALKAVKDTEKYE 345
Query: 195 FSDGNSKVKLRARLSNPMP 213
+V L ++ P
Sbjct: 346 IDGQMLEVVLAKPQADKKP 364
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 10/129 (7%)
Query: 96 QKPDVVFGHPERTVKVAFA-EPLREPDPEIMA---HVKTVFLDGVPPHWKENQIRDQIKG 151
+K D+ + K++F E +E E++A H VF+ G+P E+ +R+ +
Sbjct: 69 EKSDIATEFGDDEQKLSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRELCEP 128
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN-----SKVKLRA 206
GD++ + L ++ T + K Y F+ F T E A I I++KEF S+ K R
Sbjct: 129 MGDILEVRLMKDRDTGEHKGYAFVAFKTKEVAQKAIEEIHSKEFKGKTLRCSLSETKHRL 188
Query: 207 RLSNPMPKT 215
+ N +PKT
Sbjct: 189 FIGN-VPKT 196
>gi|413919105|gb|AFW59037.1| hypothetical protein ZEAMMB73_952837 [Zea mays]
gi|413919106|gb|AFW59038.1| hypothetical protein ZEAMMB73_952837 [Zea mays]
Length = 381
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%)
Query: 157 RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQ 216
++ LARNM AKRKD+GF+ F TH+ AVAC I+N E +G+ K K+RARLS P+ +
Sbjct: 3 KLGLARNMPAAKRKDFGFVTFDTHDNAVACAEGISNSEIGEGDHKAKVRARLSRPLQRPP 62
Query: 217 AVKGGMSGGFRIGHGSSR 234
+K G+ G FR+GHG+ R
Sbjct: 63 RMKHGLRGNFRVGHGAPR 80
>gi|281200597|gb|EFA74815.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 425
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 114/237 (48%), Gaps = 14/237 (5%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K++ GK SE+ LF+GN+ + KE + + L + EG+ +++ + D + +
Sbjct: 111 KELKGKSLRVKYSENRRKLFLGNLPKEFNKEQLLEILNKH-TEGITSMDFLMDPDNPTRN 169
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 134
RGFAFV FS + A A K P G V V +A+P++EPD ++M +V+ +++
Sbjct: 170 RGFAFVEFSDYYLADKARKEFASPSFRIGS--SCVTVNWADPVQEPDEDVMKNVRVLYVR 227
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+P ++ + +G + ++++ N+ +R+D+GF+ F + EAA + NN+
Sbjct: 228 NLPEQRNSEDLKKVFEEFGTIEKVIIPVNIPGQQRRDFGFVHFESREAAEEALVRHNNQP 287
Query: 195 FS-DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHF 250
+ G L + PM K Q R+ RT +R + + + H
Sbjct: 288 ITYQGRD---LIVSFAKPMDKKQ------RAELRV-RKLQRTVNRQNQNAVKQLHQI 334
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
VF+ GV + E+ ++ G V +I L +N + K Y FI F + + I
Sbjct: 49 VFVGGVSKNVTEDDLQSVFNSVGSVRQIRLMKNKLNGESKGYAFITFEDKSSCQMAVEKI 108
Query: 191 NNKEFSDGNSKVK 203
+NKE + +VK
Sbjct: 109 SNKELKGKSLRVK 121
>gi|356573261|ref|XP_003554781.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 100/199 (50%), Gaps = 4/199 (2%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K+ GK + SE LF+GN+ TWT++ ++ ++ G GVE I L+ D Q+ +
Sbjct: 170 KEFKGKTLRCSLSETKHRLFIGNVPKTWTEDDFRKVVEGVG-PGVETIELIKDPQNPSRN 228
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 134
RGFAFV++ + +A A Y R + F T V +A+P PD + VK +++
Sbjct: 229 RGFAFVLY--YNNACADYSRQKMASSSFKLDGNTPTVTWADPKNSPDHSASSQVKALYVK 286
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+P + Q+++ + +G+V ++V+ + KR D+GFI ++ +A+ + E
Sbjct: 287 NIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKR-DFGFIHYAERSSALKAVKDTEKYE 345
Query: 195 FSDGNSKVKLRARLSNPMP 213
+V L ++ P
Sbjct: 346 IDGQMLEVVLAKPQADKKP 364
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 16/178 (8%)
Query: 47 IKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106
+++++ D GV+GVE N EG + + +K D+ +
Sbjct: 26 VEEQIDDDGVDGVEEENA------EGSFEEDEYEDSAAEAGGKDQLPEAEKSDIATEFGD 79
Query: 107 RTVKVAFA-EPLREPDPEIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLAR 162
K++F E +E E++A H VF+ G+P E+ +R+ + GD++ + L +
Sbjct: 80 DEQKLSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRELCEPMGDILEVRLMK 139
Query: 163 NMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN-----SKVKLRARLSNPMPKT 215
+ T + K Y F+ F T E A I I++KEF S+ K R + N +PKT
Sbjct: 140 DRDTGENKGYAFVAFKTKEVAQKAIEEIHSKEFKGKTLRCSLSETKHRLFIGN-VPKT 196
>gi|255648067|gb|ACU24489.1| unknown [Glycine max]
Length = 439
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 100/199 (50%), Gaps = 4/199 (2%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K+ GK + SE LF+GN+ TWT++ ++ ++ G GVE I L+ D Q+ +
Sbjct: 170 KEFKGKTLRCSLSETKHRLFIGNVPKTWTEDDFRKVVEGVG-PGVETIELIKDPQNPSRN 228
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 134
RGFAFV++ + +A A Y R + F T V +A+P PD + VK +++
Sbjct: 229 RGFAFVLY--YNNACADYSRQKMASSSFKLDGNTPTVTWADPKNSPDHSASSQVKALYVK 286
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+P + Q+++ + +G+V ++V+ + KR D+GFI ++ +A+ + E
Sbjct: 287 NIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKR-DFGFIHYAERSSALKAVKDTEKYE 345
Query: 195 FSDGNSKVKLRARLSNPMP 213
+V L ++ P
Sbjct: 346 IDGQMLEVVLAKPQADKKP 364
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 10/129 (7%)
Query: 96 QKPDVVFGHPERTVKVAFA-EPLREPDPEIMA---HVKTVFLDGVPPHWKENQIRDQIKG 151
+K D+ + K++F E +E E++A H VF+ G+P E+ +R+ +
Sbjct: 69 EKSDIATEFGDDEQKLSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRELCEP 128
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN-----SKVKLRA 206
GD++ + L ++ T + K Y F+ F E A I I++KEF S+ K R
Sbjct: 129 MGDILEVRLMKDRDTGEHKGYAFVAFKAKEVAQKAIEEIHSKEFKGKTLRCSLSETKHRL 188
Query: 207 RLSNPMPKT 215
+ N +PKT
Sbjct: 189 FIGN-VPKT 196
>gi|327261565|ref|XP_003215600.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Anolis
carolinensis]
Length = 634
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 241 SGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDDKKKNRGF 299
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 300 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVKVLFVRNL 356
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N KE
Sbjct: 357 ANSVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEGMNGKELE 408
Query: 197 DGNSKV 202
N ++
Sbjct: 409 GENIEI 414
>gi|449431998|ref|XP_004133787.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
gi|449477982|ref|XP_004155183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
Length = 481
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 95/181 (52%), Gaps = 3/181 (1%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K++ GK + S+ LF+GN+ +WT + ++ ++ G GVENI L+ D Q+ +
Sbjct: 169 KEVKGKTIRCSLSDSKHRLFIGNVPKSWTDDEFRRLIEGVG-PGVENIELIKDPQNPNRN 227
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 134
RGFAFV++ + +A A Y R + F + V++A+P PD A VK +++
Sbjct: 228 RGFAFVLY--YNNACADYSRQKMSSANFKLDGNSPTVSWADPKSMPDNSAAAQVKALYVK 285
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+P + Q+++ + +G+V ++ + + + ++D+ FI ++ +A+ + E
Sbjct: 286 NIPENTTTEQLKELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYE 345
Query: 195 F 195
Sbjct: 346 I 346
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 186
H VF+ G+ E +RD + G++ I + ++ + + K Y FI F T EAA
Sbjct: 103 HGSEVFIGGLSRDVLEEDLRDMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKA 162
Query: 187 INAINNKEF 195
I ++ KE
Sbjct: 163 IEDLHGKEV 171
>gi|449497953|ref|XP_004174289.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Taeniopygia guttata]
Length = 492
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 92 SGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDDKKKNRGF 150
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 151 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVKVLFVRNL 207
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 208 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 259
Query: 197 DGNSKV 202
N ++
Sbjct: 260 GENIEI 265
>gi|149637545|ref|XP_001510103.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ornithorhynchus anatinus]
Length = 623
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|432936836|ref|XP_004082303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Oryzias
latipes]
Length = 542
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 231 GKHIGVCISVANNRLFVGSIPKSKTKEQIIEEFSKV-TEGLNDVILYHQPDDKKKNRGFC 289
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 290 FLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVKVLFVRNLA 346
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F ++AV + +N K+
Sbjct: 347 SAVTEELLEKTFSQFGKLERV--------KKLKDYAFIHFEERDSAVKALGDLNGKDLE 397
>gi|449267775|gb|EMC78677.1| Heterogeneous nuclear ribonucleoprotein R [Columba livia]
Length = 633
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 89/178 (50%), Gaps = 17/178 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK G S N+ LFVG+I TKE I L+++G EG+ ++ L + +RG
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENI---LEEFGKVTEGLVDVILYHQPDDKKKNRG 290
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+
Sbjct: 291 FCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRN 347
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
+ E + +G + R+ K KDY F+ F AAV +N +N K
Sbjct: 348 LATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMNEMNGK 397
>gi|345326436|ref|XP_003431043.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 562
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|326916225|ref|XP_003204410.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Meleagris gallopavo]
Length = 562
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|348518315|ref|XP_003446677.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Oreochromis niloticus]
Length = 629
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 231 GKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLSDVILYHQPDDKKKNRGFC 289
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 290 FLEYEDHKTAAQARRRLMSGKVKVWGN---LVTVEWADPIEDPDPEVMAKVKVLFVRNLA 346
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N KE
Sbjct: 347 NGVTEELLEKSFSEFGKLERV--------KKLKDYAFIHFEERDGAVKALEEMNGKELE 397
>gi|171846506|gb|AAI61767.1| syncrip protein [Xenopus (Silurana) tropicalis]
Length = 638
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 13/185 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 246 GKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDDKKKNRGFC 304
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 305 FLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVKVLFVRNLA 361
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY FI F AV + +N KE
Sbjct: 362 NTVTEEILEKAFGQFGKLERV--------KKLKDYAFIHFDERVGAVKAMEEMNGKELEG 413
Query: 198 GNSKV 202
N ++
Sbjct: 414 ENIEI 418
>gi|348531623|ref|XP_003453308.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Oreochromis niloticus]
Length = 535
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 GKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFAKV-TEGLNDVILYHQPDDKKKNRGFC 288
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 FLEYEDHKTAAQARRRLMSGKVKVWGN---LVTVEWADPIEDPDPEVMAKVKVLFVRNLA 345
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F E+AV + +N K+
Sbjct: 346 STVTEEILEKTFSQHGKLERV--------KKLKDYAFIHFEERESAVKALTDLNGKDLE 396
>gi|449488926|ref|XP_004174439.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein R-like [Taeniopygia guttata]
Length = 517
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 89/178 (50%), Gaps = 17/178 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK G S N+ LFVG+I TKE I L+++G EG+ ++ L + +RG
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENI---LEEFGKVTEGLVDVILYHQPDDKKKNRG 290
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+
Sbjct: 291 FCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRN 347
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
+ E + +G + R+ K KDY F+ F AAV +N +N K
Sbjct: 348 LATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMNEMNGK 397
>gi|47550699|ref|NP_999861.1| heterogeneous nuclear ribonucleoprotein Q [Danio rerio]
gi|34784487|gb|AAH56750.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
gi|46249711|gb|AAH68373.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
Length = 630
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 13/179 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 231 GKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDDKKKNRGFC 289
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 290 FLEYEDHKTAAQARRRLMSGKVKVWGN---LVTVEWADPIEDPDPEVMAKVKVLFVRNLA 346
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G++ R+ K KDY F+ F+ + AV + +N KE
Sbjct: 347 NSVTEEILEKAFGQFGNLERV--------KKLKDYAFVHFNDRDGAVKALTEMNGKELE 397
>gi|291222526|ref|XP_002731265.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Saccoglossus kowalevskii]
Length = 648
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 101/208 (48%), Gaps = 14/208 (6%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N LFVG+I T +K+ I ++ + V G+ ++ + + +RGFA
Sbjct: 243 GKHLGVCISVANHRLFVGSIPKTKSKDEILEEFNKH-VGGLTDVIIYHMPEDRKKNRGFA 301
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ F H A A +RL + V+G+ V V +A+P EPD E MA VK +++ +
Sbjct: 302 FLHFESHKAASLARRRLMSGRIKVWGNS--NVTVDWADPQEEPDEETMAKVKVLYVRNLT 359
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
P +E ++++ + +G V R+ K KDY F+ F +AAV + +N KE
Sbjct: 360 PDAEEEKLKEAFQAFGTVERV--------KKLKDYCFVHFEERDAAVKAMEELNGKEVEG 411
Query: 198 GNSKVKLRARLSNPMPKT--QAVKGGMS 223
+ L S K Q +GG S
Sbjct: 412 SVVDISLAKPPSENKKKKERQQTRGGRS 439
>gi|89272515|emb|CAJ81560.1| heterogeneous nuclear ribonucleoprotein R [Xenopus (Silurana)
tropicalis]
Length = 535
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 13/187 (6%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 136 GKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 194
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPEIMA VK +F+ +
Sbjct: 195 FLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEIMAKVKVLFVRNLS 251
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY F+ F +AAV ++ +N E
Sbjct: 252 STVTEEILEKAFSVFGKLERV--------KKLKDYAFVHFDERDAAVRAMDEMNGTELEG 303
Query: 198 GNSKVKL 204
++ L
Sbjct: 304 EEIEIVL 310
>gi|301618964|ref|XP_002938875.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Xenopus
(Silurana) tropicalis]
Length = 532
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 13/187 (6%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 133 GKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 191
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPEIMA VK +F+ +
Sbjct: 192 FLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEIMAKVKVLFVRNLS 248
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY F+ F +AAV ++ +N E
Sbjct: 249 STVTEEILEKAFSVFGKLERV--------KKLKDYAFVHFDERDAAVRAMDEMNGTELEG 300
Query: 198 GNSKVKL 204
++ L
Sbjct: 301 EEIEIVL 307
>gi|327288394|ref|XP_003228911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Anolis
carolinensis]
Length = 632
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV +N +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMNEMNGK 397
>gi|301608798|ref|XP_002933974.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Xenopus
(Silurana) tropicalis]
Length = 770
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 13/185 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 378 GKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDDKKKNRGFC 436
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 437 FLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVKVLFVRNLA 493
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY FI F AV + +N KE
Sbjct: 494 NTVTEEILEKAFGQFGKLERV--------KKLKDYAFIHFDERVGAVKAMEEMNGKELEG 545
Query: 198 GNSKV 202
N ++
Sbjct: 546 ENIEI 550
>gi|132626770|ref|NP_001006309.3| heterogeneous nuclear ribonucleoprotein R [Gallus gallus]
gi|326932873|ref|XP_003212536.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Meleagris gallopavo]
Length = 633
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFNKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV +N +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMNEMNGK 397
>gi|414870190|tpg|DAA48747.1| TPA: hypothetical protein ZEAMMB73_016759 [Zea mays]
Length = 518
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%)
Query: 128 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
VK VFLDGVPPHW E+++R+ +G++ I LARNM TA RKD+GFI F+ ++ + CI
Sbjct: 143 VKYVFLDGVPPHWDEDKVREIFGKFGEIDIIQLARNMFTAARKDFGFIGFTARQSTLDCI 202
Query: 188 NAINNKEFSDGNSKVKLRARLSNP 211
+N +G+ KV +++ L P
Sbjct: 203 KMVNKDGVGEGSGKVPIKSSLQRP 226
>gi|18411454|ref|NP_567192.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79324963|ref|NP_001031566.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13605916|gb|AAK32943.1|AF367357_1 AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|21360555|gb|AAM47474.1| AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|110743368|dbj|BAE99571.1| hypothetical protein [Arabidopsis thaliana]
gi|332656540|gb|AEE81940.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656541|gb|AEE81941.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 92/174 (52%), Gaps = 6/174 (3%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K+ GK + SE + LF+GNI WT++ ++ ++D G GVENI L+ D + +
Sbjct: 180 KEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVG-PGVENIELIKDPTNTTRN 238
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFL 133
RGFAFV++ + +A A Y R + D F V +A+P P+ A VK +++
Sbjct: 239 RGFAFVLY--YNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYV 296
Query: 134 DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
+P + Q+++ + +G+V +IV ++D+GF+ ++ +A+ +
Sbjct: 297 KNIPENTSTEQLKELFQRHGEVTKIVTP--PGKGGKRDFGFVHYAERSSALKAV 348
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 186
H VF+ G+P E +RD + G++ + L ++ + K Y F+ F T + A
Sbjct: 114 HGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 173
Query: 187 INAINNKEFSDGNSKVKL 204
I +++KEF + L
Sbjct: 174 IEELHSKEFKGKTIRCSL 191
>gi|410898108|ref|XP_003962540.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Takifugu
rubripes]
Length = 539
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 231 GKHIGVCISVANNRLFVGSIPKSKTKEQIIEEFSKV-TEGLNDVILYLQPVDKKKNRGFC 289
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+PL +PDPE+MA VK +F+ +
Sbjct: 290 FLEYEDHKTAAQARRRLMSGKVKVWGN---LVTVEWADPLEDPDPEVMAKVKVLFVRNLA 346
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 347 SSVTEELLEKAFSQFGKLERV--------KKLKDYAFIHFEERDGAVKALADLNGKDLE 397
>gi|296207004|ref|XP_002750459.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Callithrix jacchus]
Length = 473
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 132
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 133 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 189
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 190 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 237
>gi|189217790|ref|NP_001121335.1| heterogeneous nuclear ribonucleoprotein R [Xenopus laevis]
gi|171847308|gb|AAI61702.1| LOC100158425 protein [Xenopus laevis]
Length = 511
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 13/188 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 132 TGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLLDVILYHQPDDKKKNRGF 190
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V V +A+P+ EPDPEIMA VK +F+ +
Sbjct: 191 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEIMAKVKVLFVRNL 247
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY F+ F +AAV ++ +N E
Sbjct: 248 SSTVTEEILEKAFSVFGKLERV--------KKLKDYAFVHFDERDAAVRAMDEMNGAELE 299
Query: 197 DGNSKVKL 204
++ L
Sbjct: 300 GEEIEIVL 307
>gi|397478947|ref|XP_003810795.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
paniscus]
Length = 557
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 158 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 216
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 217 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 273
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 274 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 321
>gi|73950230|ref|XP_866516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Canis lupus familiaris]
gi|297282473|ref|XP_002802272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 4
[Macaca mulatta]
gi|332244976|ref|XP_003271639.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Nomascus leucogenys]
gi|332807935|ref|XP_003307913.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
troglodytes]
gi|402853340|ref|XP_003891354.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Papio anubis]
Length = 473
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 132
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 133 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 189
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 190 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 237
>gi|338722117|ref|XP_003364487.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Equus caballus]
Length = 473
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 132
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 133 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 189
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 190 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 237
>gi|345320008|ref|XP_001511604.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R
[Ornithorhynchus anatinus]
Length = 479
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 13/187 (6%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY F+ F AAV ++ +N KE
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKELEG 401
Query: 198 GNSKVKL 204
++ L
Sbjct: 402 EEIEIVL 408
>gi|390465453|ref|XP_002750458.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Callithrix jacchus]
Length = 532
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 133 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 191
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 192 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 248
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 249 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 296
>gi|194386954|dbj|BAG59843.1| unnamed protein product [Homo sapiens]
Length = 473
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVA-EGLVDVILYHQPDDKKKNRGFC 132
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 133 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 189
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 190 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 237
>gi|432944515|ref|XP_004083418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Oryzias latipes]
Length = 469
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ +G+ ++ L + +RGF
Sbjct: 238 GKHIGACISVANNRLFVGSIPKSKTKEQIVEEFSKV-TDGLNDVILYHQPDDKKKNRGFC 296
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ F H A A +RL V V+G V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 297 FLEFEDHKTAAQARRRLMSGKVKVWGI---LVTVEWADPIEDPDPEVMAKVKVLFVRNLA 353
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F E AV ++ +N KE
Sbjct: 354 NSVTEEILEKSFSAFGKLERV--------KKLKDYAFIHFEEREGAVKALDEMNGKELE 404
>gi|397478941|ref|XP_003810792.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
paniscus]
Length = 616
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 217 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 275
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 276 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 332
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 333 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 380
>gi|156151392|ref|NP_001095867.1| heterogeneous nuclear ribonucleoprotein R isoform 4 [Homo sapiens]
gi|73950226|ref|XP_535365.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Canis lupus familiaris]
gi|332244970|ref|XP_003271636.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Nomascus leucogenys]
gi|332807929|ref|XP_003307911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
troglodytes]
gi|402853334|ref|XP_003891351.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Papio anubis]
gi|426328273|ref|XP_004024924.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Gorilla gorilla gorilla]
gi|119615447|gb|EAW95041.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_b [Homo
sapiens]
gi|380784787|gb|AFE64269.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
Length = 532
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 133 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 191
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 192 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 248
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 249 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 296
>gi|147900289|ref|NP_001084953.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Xenopus
laevis]
gi|47122815|gb|AAH70529.1| MGC78820 protein [Xenopus laevis]
Length = 624
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 13/185 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 235 GKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDDKKKNRGFC 293
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+M+ VK +F+ +
Sbjct: 294 FLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMSKVKVLFVRNLA 350
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY FI F AV ++ +N KE
Sbjct: 351 NTVTEEILEKAFGQFGKLERV--------KKLKDYAFIHFDERVGAVKAMDEMNGKELEG 402
Query: 198 GNSKV 202
N ++
Sbjct: 403 ENIEI 407
>gi|33416526|gb|AAH55863.1| Syncrip protein, partial [Mus musculus]
Length = 667
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 274 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 332
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 333 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 389
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 390 ANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 441
Query: 197 DGNSKV 202
N ++
Sbjct: 442 GENIEI 447
>gi|297814257|ref|XP_002875012.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297320849|gb|EFH51271.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 494
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 117/259 (45%), Gaps = 28/259 (10%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K+ GK + SE + LF+GNI WT++ ++ +++ G GVENI L+ D + +
Sbjct: 179 KEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIENVG-PGVENIELIKDPANTTRN 237
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFL 133
RGFAFV++ + +A A Y R + D F V +A+P P+ A VK +++
Sbjct: 238 RGFAFVLY--YNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYV 295
Query: 134 DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
+P + Q+++ + +G+V +IV ++D+GF+ ++ +A+ +
Sbjct: 296 KNIPENTSTEQLKELFQRHGEVTKIVTPP--GKGGKRDFGFVHYAERSSALKAVKDTERY 353
Query: 194 EFSDGNSKVKLR---------------ARLSNPMPKTQAVKGGMS----GGFRIGHGSSR 234
E + +V L NP P GG + G G G +
Sbjct: 354 EVNGQPLEVVLAKPQAERKHDPSSYSYGAAPNPAPFVHPTFGGFAAAPYGAMGAGLGIAG 413
Query: 235 TFSR---YGRGSGRAGHHF 250
+FS+ YGRG+ G
Sbjct: 414 SFSQPMIYGRGAMPTGMQM 432
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 114 AEPLREPDPEIMAHVKT-------VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST 166
A P+ E + E +H+ + VF+ G+P E +RD + G++ + L ++ +
Sbjct: 93 ASPIDEEEREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDS 152
Query: 167 AKRKDYGFIDFSTHEAAVACINAINNKEF 195
K Y F+ F T + A I +++KEF
Sbjct: 153 GDSKGYAFVAFKTKDVAQKAIEDLHSKEF 181
>gi|417410478|gb|JAA51712.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 409
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 10 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 68
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 69 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 125
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 126 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 173
>gi|111494085|gb|AAI10390.1| HNRPR protein [Homo sapiens]
Length = 607
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 208 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 266
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 267 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 323
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 324 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 371
>gi|395821029|ref|XP_003783852.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Otolemur garnettii]
Length = 532
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 133 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 191
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 192 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 248
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 249 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 296
>gi|397478945|ref|XP_003810794.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
paniscus]
Length = 578
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 179 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 237
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 238 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 294
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 295 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 342
>gi|114145636|ref|NP_001041381.1| heterogeneous nuclear ribonucleoprotein Q [Rattus norvegicus]
gi|44888314|sp|Q7TP47.1|HNRPQ_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Liver regeneration-related
protein LRRG077; AltName: Full=Synaptotagmin-binding,
cytoplasmic RNA-interacting protein
gi|33086582|gb|AAP92603.1| Ab2-339 [Rattus norvegicus]
Length = 533
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 140 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 198
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 199 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 255
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 256 ANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 307
Query: 197 DGNSKV 202
N ++
Sbjct: 308 GENIEI 313
>gi|15986735|gb|AAL11726.1|AF408434_1 RRM RNA binding protein NSAP1 [Mus musculus]
Length = 558
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 165 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 223
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 224 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 280
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 281 ANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 332
Query: 197 DGNSKV 202
N ++
Sbjct: 333 GENIEI 338
>gi|348578330|ref|XP_003474936.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Cavia porcellus]
Length = 533
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 140 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 198
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 199 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 255
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 256 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 307
Query: 197 DGNSKV 202
N ++
Sbjct: 308 GENIEI 313
>gi|73950238|ref|XP_866575.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 8
[Canis lupus familiaris]
gi|296207006|ref|XP_002750460.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Callithrix jacchus]
gi|297282471|ref|XP_002802271.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 3
[Macaca mulatta]
gi|332244974|ref|XP_003271638.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Nomascus leucogenys]
gi|332807933|ref|XP_003307912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
troglodytes]
gi|402853338|ref|XP_003891353.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Papio anubis]
gi|426328277|ref|XP_004024926.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Gorilla gorilla gorilla]
gi|119615446|gb|EAW95040.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Homo
sapiens]
gi|194390156|dbj|BAG61840.1| unnamed protein product [Homo sapiens]
Length = 494
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 95 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 153
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 154 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 210
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 211 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 258
>gi|74219109|dbj|BAE26696.1| unnamed protein product [Mus musculus]
Length = 610
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 212 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 270
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 271 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 327
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 328 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 375
>gi|2252863|gb|AAB62861.1| similar to nucleolin protein [Arabidopsis thaliana]
gi|7267422|emb|CAB80892.1| putative protein [Arabidopsis thaliana]
Length = 521
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 91/172 (52%), Gaps = 6/172 (3%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
+ GK + SE + LF+GNI WT++ ++ ++D G GVENI L+ D + +RG
Sbjct: 208 LSGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVG-PGVENIELIKDPTNTTRNRG 266
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDG 135
FAFV++ + +A A Y R + D F V +A+P P+ A VK +++
Sbjct: 267 FAFVLY--YNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKN 324
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
+P + Q+++ + +G+V +IV ++D+GF+ ++ +A+ +
Sbjct: 325 IPENTSTEQLKELFQRHGEVTKIVTPP--GKGGKRDFGFVHYAERSSALKAV 374
>gi|13435603|gb|AAH04679.1| Hnrpr protein, partial [Mus musculus]
Length = 601
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 203 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 261
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 262 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 318
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 319 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 366
>gi|426353899|ref|XP_004044412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 464
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 132 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 190
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 191 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 247
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 248 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 299
Query: 197 DGNSKV 202
N ++
Sbjct: 300 GENIEI 305
>gi|148697994|gb|EDL29941.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 607
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 209 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 267
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 268 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 324
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 325 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 372
>gi|26347007|dbj|BAC37152.1| unnamed protein product [Mus musculus]
Length = 491
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 159 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 217
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 218 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 274
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 275 ANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 326
Query: 197 DGNSKV 202
N ++
Sbjct: 327 GENIEI 332
>gi|431891280|gb|ELK02157.1| Heterogeneous nuclear ribonucleoprotein R [Pteropus alecto]
Length = 633
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>gi|390465455|ref|XP_002750457.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Callithrix jacchus]
gi|403287392|ref|XP_003934932.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Saimiri boliviensis boliviensis]
Length = 633
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>gi|228008396|ref|NP_001153145.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Homo sapiens]
gi|332218415|ref|XP_003258351.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778173|ref|XP_003431697.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Canis lupus familiaris]
gi|358413804|ref|XP_003582661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|359068807|ref|XP_003586521.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|426234732|ref|XP_004011346.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Ovis aries]
gi|119569008|gb|EAW48623.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_b [Homo sapiens]
gi|221042908|dbj|BAH13131.1| unnamed protein product [Homo sapiens]
gi|380783243|gb|AFE63497.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
Length = 464
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 132 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 190
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 191 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 247
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 248 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 299
Query: 197 DGNSKV 202
N ++
Sbjct: 300 GENIEI 305
>gi|126328455|ref|XP_001366091.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Monodelphis
domestica]
Length = 633
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>gi|456753306|gb|JAA74142.1| heterogeneous nuclear ribonucleoprotein R tv2 [Sus scrofa]
Length = 633
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>gi|37589144|gb|AAH58807.1| Syncrip protein, partial [Mus musculus]
Length = 635
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 303 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 361
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 362 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 418
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 419 ANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 470
Query: 197 DGNSKV 202
N ++
Sbjct: 471 GENIEI 476
>gi|417403514|gb|JAA48557.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 633
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>gi|148694590|gb|EDL26537.1| mCG16769, isoform CRA_c [Mus musculus]
Length = 612
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 13/185 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 282 GKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFC 340
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 341 FLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNLA 397
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 398 NTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 449
Query: 198 GNSKV 202
N ++
Sbjct: 450 ENIEI 454
>gi|129277529|ref|NP_001076077.1| heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|126717461|gb|AAI33300.1| HNRNPR protein [Bos taurus]
gi|296489987|tpg|DAA32100.1| TPA: heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|440897846|gb|ELR49456.1| Heterogeneous nuclear ribonucleoprotein R [Bos grunniens mutus]
Length = 633
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>gi|74228775|dbj|BAE21877.1| unnamed protein product [Mus musculus]
Length = 604
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 206 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 264
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 265 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 321
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 322 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 369
>gi|194216234|ref|XP_001915169.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Equus caballus]
Length = 623
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|74207436|dbj|BAE30898.1| unnamed protein product [Mus musculus]
Length = 632
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>gi|5031755|ref|NP_005817.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Homo sapiens]
gi|73950240|ref|XP_852945.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Canis lupus familiaris]
gi|301754932|ref|XP_002913314.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Ailuropoda melanoleuca]
gi|332244972|ref|XP_003271637.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Nomascus leucogenys]
gi|332807931|ref|XP_513191.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
troglodytes]
gi|397478943|ref|XP_003810793.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
paniscus]
gi|402853336|ref|XP_003891352.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Papio anubis]
gi|426328275|ref|XP_004024925.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Gorilla gorilla gorilla]
gi|12230547|sp|O43390.1|HNRPR_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein R;
Short=hnRNP R
gi|2697103|gb|AAC39540.1| heterogeneous nuclear ribonucleoprotein R [Homo sapiens]
gi|119615448|gb|EAW95042.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_c [Homo
sapiens]
gi|168277942|dbj|BAG10949.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|281351549|gb|EFB27133.1| hypothetical protein PANDA_001090 [Ailuropoda melanoleuca]
gi|380784785|gb|AFE64268.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|383408165|gb|AFH27296.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|384939486|gb|AFI33348.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|410224016|gb|JAA09227.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410262100|gb|JAA19016.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301026|gb|JAA29113.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350925|gb|JAA42066.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 633
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>gi|338722113|ref|XP_001501475.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Equus caballus]
gi|344287364|ref|XP_003415423.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Loxodonta
africana]
gi|348571199|ref|XP_003471383.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Cavia
porcellus]
Length = 633
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>gi|156151396|ref|NP_001095869.1| heterogeneous nuclear ribonucleoprotein R isoform 3 [Homo sapiens]
gi|297282469|ref|XP_002802270.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 2
[Macaca mulatta]
gi|380784783|gb|AFE64267.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
Length = 535
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RG
Sbjct: 133 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRG 192
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+
Sbjct: 193 FCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRN 249
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
+ E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 250 LATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 299
>gi|354466428|ref|XP_003495676.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Cricetulus griseus]
Length = 623
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|114145493|ref|NP_062640.2| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Mus musculus]
gi|44888326|sp|Q7TMK9.2|HNRPQ_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein; AltName: Full=pp68
gi|148694587|gb|EDL26534.1| mCG16769, isoform CRA_a [Mus musculus]
gi|148694589|gb|EDL26536.1| mCG16769, isoform CRA_a [Mus musculus]
Length = 623
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|197102464|ref|NP_001126631.1| heterogeneous nuclear ribonucleoprotein R [Pongo abelii]
gi|55732180|emb|CAH92794.1| hypothetical protein [Pongo abelii]
Length = 633
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>gi|189053709|dbj|BAG35961.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>gi|426234734|ref|XP_004011347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Ovis aries]
Length = 410
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 78 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 136
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 137 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 193
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 194 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 245
Query: 197 DGNSKV 202
N ++
Sbjct: 246 GENIEI 251
>gi|426221978|ref|XP_004005182.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Ovis aries]
Length = 633
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>gi|395857934|ref|XP_003801335.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Otolemur garnettii]
Length = 410
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 78 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 136
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 137 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 193
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 194 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 245
Query: 197 DGNSKV 202
N ++
Sbjct: 246 GENIEI 251
>gi|62087776|dbj|BAD92335.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
Length = 534
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 202 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 260
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 261 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 317
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 318 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 369
Query: 197 DGNSKV 202
N ++
Sbjct: 370 GENIEI 375
>gi|62990189|ref|NP_783193.2| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
gi|62471548|gb|AAH93598.1| Heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>gi|33859724|ref|NP_083147.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|17066599|gb|AAL35332.1|AF441128_1 heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|23273731|gb|AAH38051.1| Heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 632
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>gi|395821027|ref|XP_003783851.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Otolemur garnettii]
Length = 633
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>gi|354483012|ref|XP_003503689.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Cricetulus griseus]
gi|344256125|gb|EGW12229.1| Heterogeneous nuclear ribonucleoprotein R [Cricetulus griseus]
Length = 633
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>gi|228008291|ref|NP_006363.4| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Homo sapiens]
gi|302564259|ref|NP_001180774.1| heterogeneous nuclear ribonucleoprotein Q [Macaca mulatta]
gi|109071945|ref|XP_001089294.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 8
[Macaca mulatta]
gi|291396562|ref|XP_002714605.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Oryctolagus cuniculus]
gi|301775585|ref|XP_002923213.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Ailuropoda melanoleuca]
gi|332218419|ref|XP_003258353.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778171|ref|XP_532223.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Canis lupus familiaris]
gi|348578326|ref|XP_003474934.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Cavia porcellus]
gi|358413806|ref|XP_002705232.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|359068810|ref|XP_002690247.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|395737457|ref|XP_003776919.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Pongo abelii]
gi|397504636|ref|XP_003822890.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3 [Pan
paniscus]
gi|402867572|ref|XP_003897917.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Papio anubis]
gi|403261187|ref|XP_003923009.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Saimiri
boliviensis boliviensis]
gi|426234730|ref|XP_004011345.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ovis aries]
gi|92090361|sp|O60506.2|HNRPQ_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein
gi|62897111|dbj|BAD96496.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
gi|119569014|gb|EAW48629.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|119569015|gb|EAW48630.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|261858370|dbj|BAI45707.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
gi|281344763|gb|EFB20347.1| hypothetical protein PANDA_012313 [Ailuropoda melanoleuca]
gi|387539924|gb|AFJ70589.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|431838171|gb|ELK00103.1| Heterogeneous nuclear ribonucleoprotein Q [Pteropus alecto]
gi|440903331|gb|ELR54008.1| Heterogeneous nuclear ribonucleoprotein Q [Bos grunniens mutus]
Length = 623
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|351702127|gb|EHB05046.1| Heterogeneous nuclear ribonucleoprotein Q [Heterocephalus glaber]
Length = 623
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|198423269|ref|XP_002131002.1| PREDICTED: similar to APOBEC1 complementation factor [Ciona
intestinalis]
Length = 708
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 92/190 (48%), Gaps = 16/190 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T KE I ++K EGV ++ + + +RGFA
Sbjct: 170 GRLLGVCKSVDNCRLFVGGIPKTKQKEEILIEMKKV-TEGVCDVIVYPSAADKQKNRGFA 228
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GHP + V +AEP E D +IMA VK +++ +
Sbjct: 229 FVEYQDHHTAAMARRKLMHTRPQIWGHP---IAVDWAEPEVEVDDDIMATVKILYVRNLM 285
Query: 138 PHWKENQIRDQIKGY---GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+ E Q+ + G + R+ K +DYGF+ F+T E A+ C+ +N K
Sbjct: 286 LNTTEEQLEAEFSALVPSGSIERV--------KKIRDYGFVHFNTRENAIKCLKQLNGKI 337
Query: 195 FSDGNSKVKL 204
+V L
Sbjct: 338 LDGSPMEVTL 347
>gi|343960931|dbj|BAK62055.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 497
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RG
Sbjct: 95 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRG 154
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+
Sbjct: 155 FCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRN 211
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
+ E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 212 LATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 261
>gi|426353905|ref|XP_004044415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 623
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|359338991|ref|NP_001240700.1| heterogeneous nuclear ribonucleoprotein Q isoform 7 [Homo sapiens]
gi|426353901|ref|XP_004044413.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
gi|441601143|ref|XP_004087662.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|119569007|gb|EAW48622.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_a [Homo sapiens]
Length = 410
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 78 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 136
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 137 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 193
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 194 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 245
Query: 197 DGNSKV 202
N ++
Sbjct: 246 GENIEI 251
>gi|34365228|emb|CAE45953.1| hypothetical protein [Homo sapiens]
Length = 613
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RG
Sbjct: 211 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRG 270
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+
Sbjct: 271 FCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRN 327
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
+ E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 328 LATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 377
>gi|194386914|dbj|BAG59823.1| unnamed protein product [Homo sapiens]
Length = 595
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 196 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 254
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 255 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 311
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 312 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 359
>gi|344264671|ref|XP_003404415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Loxodonta africana]
Length = 620
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 227 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 285
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 286 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 342
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 343 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 394
Query: 197 DGNSKV 202
N ++
Sbjct: 395 GENIEI 400
>gi|189069313|dbj|BAG36345.1| unnamed protein product [Homo sapiens]
Length = 623
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|126310303|ref|XP_001366745.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Monodelphis domestica]
Length = 623
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|350578257|ref|XP_001927626.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Sus
scrofa]
Length = 623
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|27903509|gb|AAO24773.1| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>gi|73950236|ref|XP_866562.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 7
[Canis lupus familiaris]
gi|403287394|ref|XP_003934933.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Saimiri boliviensis boliviensis]
gi|410966348|ref|XP_003989695.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Felis catus]
gi|85681819|gb|ABC73063.1| heterogeneous nuclear ribonucleoprotein-R2 [Homo sapiens]
Length = 595
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 196 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 254
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 255 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 311
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 312 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 359
>gi|338722115|ref|XP_003364486.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Equus caballus]
Length = 595
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 196 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 254
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 255 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 311
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 312 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 359
>gi|417412066|gb|JAA52448.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 638
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 245 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 303
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 304 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 360
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 361 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 412
Query: 197 DGNSKV 202
N ++
Sbjct: 413 GENIEI 418
>gi|194216236|ref|XP_001915171.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Equus caballus]
Length = 562
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|444729721|gb|ELW70128.1| Heterogeneous nuclear ribonucleoprotein Q [Tupaia chinensis]
Length = 659
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 266 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 324
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 325 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 381
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 382 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 433
Query: 197 DGNSKV 202
N ++
Sbjct: 434 GENIEI 439
>gi|335307327|ref|XP_003127745.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sus scrofa]
Length = 589
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>gi|395534549|ref|XP_003769303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Sarcophilus
harrisii]
Length = 605
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|118404976|ref|NP_001072501.1| probable RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
gi|123905873|sp|Q0P4R6.1|RBM46_XENTR RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|112419351|gb|AAI21935.1| RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
Length = 534
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 107/216 (49%), Gaps = 20/216 (9%)
Query: 6 LIYILIFPLKQIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 64
L+ I + +IC GK G S DN LF+G+I KE I +++K EGV ++ +
Sbjct: 115 LLAIRMLNNYEICQGKFIGVCVSLDNCRLFIGSIPQEKRKEEILEEMKKV-TEGVMDVIV 173
Query: 65 VSDIQHEGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE 123
+ +RGFAFVM+ H AMA K + P ++GH T+KVA+A P +E D E
Sbjct: 174 YPSATDKTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGH---TIKVAWASPEKEVDEE 230
Query: 124 IMAHVKTVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHE 181
M VK +++ + E I+ + Y G V R+ K +DY F+ F +
Sbjct: 231 TMQKVKVLYVRNLMMSTTEETIKAEFNRYKPGVVERV--------KKIRDYAFVHFFRRD 282
Query: 182 AAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQA 217
A+A ++ +N + DG ++ L+ P+ K A
Sbjct: 283 YAIAAMSVMNGR-LIDG---ARIEVTLAKPVNKEAA 314
>gi|355722853|gb|AES07708.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Mustela
putorius furo]
Length = 698
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 332 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 390
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 391 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 447
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 448 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 499
Query: 197 DGNSKV 202
N ++
Sbjct: 500 GENIEI 505
>gi|354466426|ref|XP_003495675.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Cricetulus griseus]
gi|344238401|gb|EGV94504.1| Heterogeneous nuclear ribonucleoprotein Q [Cricetulus griseus]
Length = 562
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|6576815|dbj|BAA88342.1| SYNCRIP [Mus musculus]
gi|51329959|gb|AAH80309.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
gi|127797499|gb|AAH41148.2| Syncrip protein [Mus musculus]
gi|127801712|gb|AAI08364.2| Syncrip protein [Mus musculus]
Length = 561
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|29788787|ref|NP_062770.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Mus musculus]
gi|26330244|dbj|BAC28852.1| unnamed protein product [Mus musculus]
gi|26346458|dbj|BAC36880.1| unnamed protein product [Mus musculus]
gi|148694591|gb|EDL26538.1| mCG16769, isoform CRA_d [Mus musculus]
Length = 562
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|426221980|ref|XP_004005183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Ovis aries]
Length = 595
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 196 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 254
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 255 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 311
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 312 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 359
>gi|410959606|ref|XP_004001668.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Felis catus]
Length = 562
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|127799069|gb|AAH50079.2| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
Length = 562
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|297282467|ref|XP_001111802.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 1
[Macaca mulatta]
Length = 636
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RG
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRG 293
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+
Sbjct: 294 FCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRN 350
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
+ E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 351 LATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 400
>gi|5031512|gb|AAD38198.1|AF155568_1 NSAP1 protein [Homo sapiens]
Length = 562
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSQV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|395521675|ref|XP_003764941.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sarcophilus
harrisii]
Length = 563
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>gi|351698414|gb|EHB01333.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 402
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 89/180 (49%), Gaps = 14/180 (7%)
Query: 16 QIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
+IC GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +
Sbjct: 34 EICPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKN 92
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFL 133
RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+
Sbjct: 93 RGFRFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFV 149
Query: 134 DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
+ E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 150 RNLVTRVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 201
>gi|395821031|ref|XP_003783853.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Otolemur garnettii]
Length = 595
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 196 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 254
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 255 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 311
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 312 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 359
>gi|383415175|gb|AFH30801.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|384944782|gb|AFI35996.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|410227736|gb|JAA11087.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255524|gb|JAA15729.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304910|gb|JAA31055.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 624
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|74194838|dbj|BAE26010.1| unnamed protein product [Mus musculus]
Length = 632
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKRKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>gi|156151394|ref|NP_001095868.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Homo sapiens]
gi|12655185|gb|AAH01449.1| HNRPR protein [Homo sapiens]
gi|123982706|gb|ABM83094.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|123997373|gb|ABM86288.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|383408163|gb|AFH27295.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|384939484|gb|AFI33347.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|410262102|gb|JAA19017.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301028|gb|JAA29114.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350927|gb|JAA42067.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 636
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RG
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRG 293
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+
Sbjct: 294 FCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRN 350
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
+ E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 351 LATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 400
>gi|417411732|gb|JAA52293.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 577
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 245 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 303
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 304 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 360
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 361 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 412
Query: 197 DGNSKV 202
N ++
Sbjct: 413 GENIEI 418
>gi|395857930|ref|XP_003801333.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Otolemur garnettii]
Length = 562
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|228008400|ref|NP_001153149.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Homo sapiens]
gi|296198708|ref|XP_002746830.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Callithrix jacchus]
gi|301775581|ref|XP_002923211.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Ailuropoda melanoleuca]
gi|332218413|ref|XP_003258350.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778175|ref|XP_003431698.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Canis lupus familiaris]
gi|348578328|ref|XP_003474935.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Cavia porcellus]
gi|358413802|ref|XP_589161.5| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|359068803|ref|XP_002690248.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|395737455|ref|XP_003776918.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Pongo abelii]
gi|397504632|ref|XP_003822888.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Pan
paniscus]
gi|402867568|ref|XP_003897915.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Papio anubis]
gi|426234728|ref|XP_004011344.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ovis aries]
gi|119569010|gb|EAW48625.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|119569011|gb|EAW48626.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|380783245|gb|AFE63498.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|383409779|gb|AFH28103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|384940996|gb|AFI34103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|410227734|gb|JAA11086.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255522|gb|JAA15728.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304908|gb|JAA31054.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 562
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|426353897|ref|XP_004044411.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 562
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|126306127|ref|XP_001362774.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Monodelphis domestica]
Length = 561
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|228008293|ref|NP_001153148.1| heterogeneous nuclear ribonucleoprotein Q isoform 5 [Homo sapiens]
gi|390461868|ref|XP_003732753.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Callithrix
jacchus]
gi|119569009|gb|EAW48624.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_c [Homo sapiens]
Length = 561
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|344264673|ref|XP_003404416.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Loxodonta africana]
Length = 559
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 227 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 285
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 286 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 342
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 343 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 394
Query: 197 DGNSKV 202
N ++
Sbjct: 395 GENIEI 400
>gi|149062249|gb|EDM12672.1| rCG47908 [Rattus norvegicus]
Length = 406
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 133 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 191
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 192 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 248
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 249 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 296
>gi|223648918|gb|ACN11217.1| Heterogeneous nuclear ribonucleoprotein Q [Salmo salar]
Length = 619
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 242 GKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFAKV-TEGLNDVILYHQPDDKKKNRGFC 300
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 301 FLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVKVLFVRNLA 357
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F +AAV + +N K
Sbjct: 358 NSVTEEILEKSFSQFGKLERV--------KKLKDYAFVHFDERDAAVKALAQMNGK 405
>gi|302770274|ref|XP_002968556.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
gi|302788312|ref|XP_002975925.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300156201|gb|EFJ22830.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300164200|gb|EFJ30810.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
Length = 477
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 93/181 (51%), Gaps = 3/181 (1%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
++ G++ + S+ LF+GNI +W +++ L + G GVE + L+ D ++ G +R
Sbjct: 167 ELKGRKLRFSHSQAKHRLFIGNIPKSWDTPELEKILAEEG-PGVEGVELLKDPRNPGKNR 225
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
GFAFV + H A A K + + G+ TV ++A+P +P + +K V++
Sbjct: 226 GFAFVEYYNHACADHARKLMSRSSFRLGNNVPTV--SWADPRTGAEPAATSQIKVVYVRN 283
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P E Q+R + +G++ ++VL ++ ++D+GF+ F+ A+ I E
Sbjct: 284 LPEAVTEEQLRGLFEHHGEITKVVLPQSKPGQPKRDFGFVHFADRNDALKAIEKTEKYEL 343
Query: 196 S 196
Sbjct: 344 E 344
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 31/69 (44%)
Query: 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 186
H VF+ GV E+ +R+ G++ + + ++ T K Y F+ ++ E A
Sbjct: 100 HGSEVFIGGVTRDTNEDDLRELCSPCGEIFEVRILKDKETGNNKGYAFVTYTNRETAEKA 159
Query: 187 INAINNKEF 195
I + N E
Sbjct: 160 IETLANSEL 168
>gi|149024313|gb|EDL80810.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Rattus
norvegicus]
Length = 447
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 175 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 233
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 234 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 290
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 291 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 338
>gi|301775589|ref|XP_002923215.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Ailuropoda melanoleuca]
Length = 626
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 14/188 (7%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKL-KDYGV-EGVENINLVSDIQHEGLSR 75
GK G S N+ LFVG+I + TKE I ++ K G+ EG+ ++ L + +R
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTGLWEGLTDVILYHQPDDKKKNR 289
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 134
GF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+
Sbjct: 290 GFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVR 346
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+ E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 347 NLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKD 398
Query: 195 FSDGNSKV 202
N ++
Sbjct: 399 LEGENIEI 406
>gi|3694986|gb|AAC62511.1| RRM RNA binding protein GRY-RBP [Mus musculus]
Length = 625
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 233 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 291
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 292 CFQEYEDHKAAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 348
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 349 ANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 400
Query: 197 DGNSKV 202
N ++
Sbjct: 401 GENIEI 406
>gi|442620147|ref|NP_001262777.1| syncrip, isoform J [Drosophila melanogaster]
gi|440217678|gb|AGB96157.1| syncrip, isoform J [Drosophila melanogaster]
Length = 761
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 13/204 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK+ G S +N LFVGNI ++ + ++ + G+ + + S + +RGF
Sbjct: 274 TGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKH-APGLYEVIIYSSPDDKKKNRGF 332
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++ +
Sbjct: 333 CFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRNL 389
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E+++++Q + YG V R+ K KDY FI F ++AV + +N KE
Sbjct: 390 TQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEIG 441
Query: 197 DGNSKVKLRARLSNPMPKTQAVKG 220
N +V L S+ K + ++
Sbjct: 442 ASNIEVSLAKPPSDKKKKEEILRA 465
>gi|442620153|ref|NP_001262779.1| syncrip, isoform M [Drosophila melanogaster]
gi|440217681|gb|AGB96159.1| syncrip, isoform M [Drosophila melanogaster]
Length = 699
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 13/204 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK+ G S +N LFVGNI ++ + ++ + G+ + + S + +RGF
Sbjct: 266 TGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHA-PGLYEVIIYSSPDDKKKNRGF 324
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++ +
Sbjct: 325 CFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRNL 381
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E+++++Q + YG V R+ K KDY FI F ++AV + +N KE
Sbjct: 382 TQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEIG 433
Query: 197 DGNSKVKLRARLSNPMPKTQAVKG 220
N +V L S+ K + ++
Sbjct: 434 ASNIEVSLAKPPSDKKKKEEILRA 457
>gi|224613218|gb|ACN60188.1| Heterogeneous nuclear ribonucleoprotein Q [Salmo salar]
Length = 583
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE + ++ EG+ ++ L + +RGF
Sbjct: 186 GKHIGVCISVANNRLFVGSIPKSKTKEQMVEEFAKV-TEGLNDVILYHQPDDKKKNRGFC 244
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPD E+MA VK +F+ +
Sbjct: 245 FLEYEDHKTAAQARRRLMSGKVKVWGN---AVTVEWADPIEEPDSEVMAKVKVLFVRNLA 301
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F ++AV + +N K+
Sbjct: 302 NSVTEEILEKSFGQFGRLERV--------KKLKDYAFIHFDERDSAVKALAEMNGKDLE 352
>gi|384250281|gb|EIE23761.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 374
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
Query: 14 LKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGL 73
L G+ APS+ L+VGNI +K+ +K +L D V+GVE I L+ ++ G
Sbjct: 144 LADFPGQNLRVAPSQSKHKLYVGNIPRDLSKDTLKAEL-DAVVKGVEVIELLMSKEYPGN 202
Query: 74 SRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFL 133
+RGFAF+ F H A A L P + R++ VA+AEP + D VK+V++
Sbjct: 203 NRGFAFIEFYNHACAQLAKNALSAP--TYTMHGRSLNVAYAEP-KGADQVPTQQVKSVYV 259
Query: 134 DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFS 178
+P E ++++ + +G+V ++V+ + +++GF+ FS
Sbjct: 260 GNLPASANEAKLKELFEQFGEVTKVVIPPSRPDKPNREFGFVHFS 304
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 115 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARN-MSTAKRKDYG 173
+P+ EP H VF+ G+P E+Q++ + G+V +VL ++ + + + +G
Sbjct: 68 DPMSEP-----PHGTEVFVGGIPRSATEDQLKVFAEAMGEVHAVVLLKDPQNNEQNRGFG 122
Query: 174 FIDFSTHEAAVACINAINNKEFSD 197
F+ F T AA + + K+ +D
Sbjct: 123 FVKFKTRAAATDALEKLAGKQLAD 146
>gi|74141454|dbj|BAB27533.3| unnamed protein product [Mus musculus]
Length = 381
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 203 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 261
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 262 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 318
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 319 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 366
>gi|3037013|gb|AAC12926.1| Gry-rbp [Homo sapiens]
gi|15809586|gb|AAK59703.1| hnRNP Q3 [Homo sapiens]
Length = 623
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +R F
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRSF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|296084906|emb|CBI28315.3| unnamed protein product [Vitis vinifera]
Length = 434
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 105/205 (51%), Gaps = 8/205 (3%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G++ + S+ LF+GN+ +W +E IK+ + + G GV + LV D+++ +RGFA
Sbjct: 123 GRKIKCSTSQAKHRLFIGNVPRSWGEEDIKKVVTEIG-PGVTAVELVKDMKNSSNNRGFA 181
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
F+ + H A A Y R + + F V++A+P + D + VK V++ +P
Sbjct: 182 FIDYYNH--ACAEYSRQKMMNPKFKLDNNAPTVSWADP-KNADSSPASQVKAVYVKNLPK 238
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198
+ ++Q++ + +G + ++VL S ++ GF+ F+ +A + A+ N E +
Sbjct: 239 NITQDQLKQLFEHHGKITKVVLPPAKSGQEKSRIGFVHFAERSSA---MKALKNTEKYEI 295
Query: 199 NSKVKLRARLSNPMPKTQAVKGGMS 223
+ +V L L+ P ++V G S
Sbjct: 296 DGQV-LECSLAKPQADQKSVGGSNS 319
>gi|219363109|ref|NP_001136652.1| uncharacterized protein LOC100216781 [Zea mays]
gi|194696514|gb|ACF82341.1| unknown [Zea mays]
Length = 372
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 49/71 (69%)
Query: 164 MSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMS 223
M AKRKD+GF+ F TH+ AVAC I+N E +G+ K K+RARLS P+ + +K G+
Sbjct: 1 MPAAKRKDFGFVTFDTHDNAVACAEGISNSEIGEGDHKAKVRARLSRPLQRPPRMKHGLR 60
Query: 224 GGFRIGHGSSR 234
G FR+GHG+ R
Sbjct: 61 GNFRVGHGAPR 71
>gi|154757562|gb|AAI51724.1| SYNCRIP protein [Bos taurus]
Length = 456
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 270 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 328
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 329 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 385
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 386 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 437
Query: 197 DGNSKV 202
N ++
Sbjct: 438 GENIEI 443
>gi|221129841|ref|XP_002156950.1| PREDICTED: APOBEC1 complementation factor-like [Hydra
magnipapillata]
Length = 598
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 18/199 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
+ G S DN LF+G I K+ I +++ + V N+ + + +RGFA
Sbjct: 156 SRLIGVCHSVDNCRLFIGGIPKKVKKDEILEEISKV-TDSVVNVIVYPSATDKSKNRGFA 214
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV ++CH A A ++L + ++GHP + V +AEP ++ D +IM VK +++ +
Sbjct: 215 FVEYNCHRSAAMARRKLMNGKIQLWGHP---IAVDWAEPEQDIDEDIMDQVKVLYIRNLQ 271
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI--NNKEF 195
+ E I + K + +V R+ K KDY F+ F T E A + ++ NN E
Sbjct: 272 LNTTEETIENLFKKFAEVERV--------KKIKDYCFVHFVTREGARLALESVKANNGES 323
Query: 196 SDGNSKVKLRARLSNPMPK 214
DG K+ L+ P+ K
Sbjct: 324 IDG---AKIEVTLAKPVDK 339
>gi|156399642|ref|XP_001638610.1| predicted protein [Nematostella vectensis]
gi|156225732|gb|EDO46547.1| predicted protein [Nematostella vectensis]
Length = 411
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 93/197 (47%), Gaps = 17/197 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LFVG I K+ I ++ + V ++ + Q + +RGFA
Sbjct: 125 GKCIGVCSSVDNCRLFVGGIPKKVKKDEIMAEVSKV-TDNVVDVIVYPSAQDKTKNRGFA 183
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H DA A ++L + ++GH + V +AEP +E D EIM VK ++ +
Sbjct: 184 FVEYISHRDAAMARRKLMTGKIQLWGH---QIAVDWAEPEQEVDQEIMDQVKVLYARNLL 240
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I +G+V R+ K KDY FI F T E A + A+N E D
Sbjct: 241 LSTTEETIEQAFSKFGEVERV--------KKIKDYCFIHFRTKEQARDAMEAMNETEL-D 291
Query: 198 GNSKVKLRARLSNPMPK 214
GN ++ L+ P+ K
Sbjct: 292 GN---EIEVTLAKPVDK 305
>gi|15809590|gb|AAK59705.1| hnRNP Q1 [Homo sapiens]
Length = 561
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +R F
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRSF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>gi|22655766|gb|AAN04183.1| Hypothetical protein [Oryza sativa Japonica Group]
gi|31430385|gb|AAP52302.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 728
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 18/202 (8%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LFVG + +E I+ G VE+I +V + AFV ++ D A
Sbjct: 256 LFVGGLPKDCVEEDIRVVFSQCG--EVESIRIVKKRKR------IAFVRYA---DISATK 304
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREP-DPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K L + ++V+V+ AEP R+ + + + VKTV+L+ P W E I + +G
Sbjct: 305 KALTEFKDGIKVNGKSVRVSVAEPHRKSSEQKALTKVKTVYLEHFPRSWDERNIEECCEG 364
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 211
YG++ ++ N+ +K+K F++FS+ ++A+AC+ I+ + +D +VKL A L+ P
Sbjct: 365 YGNIQKV----NILRSKKKVVSFVEFSSRKSALACVEGISKAKIND--REVKLAASLARP 418
Query: 212 MPKTQAVKGGMSGGFRIGHGSS 233
K Q GGF + G++
Sbjct: 419 QSKVQLANESSKGGFNVHSGAT 440
>gi|116283697|gb|AAH24283.1| SYNCRIP protein [Homo sapiens]
Length = 453
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 13/185 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 267 GKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFC 325
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 326 FLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNLA 382
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 383 NTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 434
Query: 198 GNSKV 202
N ++
Sbjct: 435 ENIEI 439
>gi|26454828|gb|AAH40844.1| SYNCRIP protein [Homo sapiens]
Length = 410
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RG
Sbjct: 78 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGS 136
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 137 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 193
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 194 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 245
Query: 197 DGNSKV 202
N ++
Sbjct: 246 GENIEI 251
>gi|225464938|ref|XP_002275366.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Vitis
vinifera]
Length = 503
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 105/205 (51%), Gaps = 8/205 (3%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G++ + S+ LF+GN+ +W +E IK+ + + G GV + LV D+++ +RGFA
Sbjct: 192 GRKIKCSTSQAKHRLFIGNVPRSWGEEDIKKVVTEIG-PGVTAVELVKDMKNSSNNRGFA 250
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
F+ + H A A Y R + + F V++A+P + D + VK V++ +P
Sbjct: 251 FIDYYNH--ACAEYSRQKMMNPKFKLDNNAPTVSWADP-KNADSSPASQVKAVYVKNLPK 307
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198
+ ++Q++ + +G + ++VL S ++ GF+ F+ +A + A+ N E +
Sbjct: 308 NITQDQLKQLFEHHGKITKVVLPPAKSGQEKSRIGFVHFAERSSA---MKALKNTEKYEI 364
Query: 199 NSKVKLRARLSNPMPKTQAVKGGMS 223
+ +V L L+ P ++V G S
Sbjct: 365 DGQV-LECSLAKPQADQKSVGGSNS 388
>gi|46362505|gb|AAH66570.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TK+ I ++ EG+ ++ L + +RGF
Sbjct: 232 GKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKV-TEGLNDVILYHQPDDKKKNRGFC 290
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 291 FLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVKVLFVRNLA 347
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + ++ K+
Sbjct: 348 STVTEELLEKTFCQFGKLERV--------KKLKDYAFIHFEERDGAVKALAELHGKDLE 398
>gi|222612494|gb|EEE50626.1| hypothetical protein OsJ_30830 [Oryza sativa Japonica Group]
Length = 653
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 18/202 (8%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LFVG + +E I+ G VE+I +V + AFV ++ D A
Sbjct: 219 LFVGGLPKDCVEEDIRVVFSQCG--EVESIRIVKKRKR------IAFVRYA---DISATK 267
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREP-DPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K L + ++V+V+ AEP R+ + + + VKTV+L+ P W E I + +G
Sbjct: 268 KALTEFKDGIKVNGKSVRVSVAEPHRKSSEQKALTKVKTVYLEHFPRSWDERNIEECCEG 327
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 211
YG++ ++ + R +K+K F++FS+ ++A+AC+ I+ + +D +VKL A L+ P
Sbjct: 328 YGNIQKVNILR----SKKKVVSFVEFSSRKSALACVEGISKAKIND--REVKLAASLARP 381
Query: 212 MPKTQAVKGGMSGGFRIGHGSS 233
K Q GGF + G++
Sbjct: 382 QSKVQLANESSKGGFNVHSGAT 403
>gi|218184183|gb|EEC66610.1| hypothetical protein OsI_32844 [Oryza sativa Indica Group]
Length = 690
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 18/202 (8%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LFVG + +E I+ G VE+I +V + AFV ++ D A
Sbjct: 256 LFVGGLPKDCVEEDIRVVFSQCG--EVESIRIVKKRKR------IAFVRYA---DISATK 304
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREP-DPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K L + ++V+V+ AEP R+ + + + VKTV+L+ P W E I + +G
Sbjct: 305 KALTEFKDGIKVNGKSVRVSVAEPHRKSSEQKALTKVKTVYLEHFPRSWDERNIEECCEG 364
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 211
YG++ ++ + R +K+K F++FS+ ++A+AC+ I+ + +D +VKL A L+ P
Sbjct: 365 YGNIQKVNILR----SKKKVVSFVEFSSRKSALACVEGISKAKIND--REVKLAASLARP 418
Query: 212 MPKTQAVKGGMSGGFRIGHGSS 233
K Q GGF + G++
Sbjct: 419 QSKVQLANESSKGGFNVHSGAT 440
>gi|161078446|ref|NP_732558.2| syncrip, isoform C [Drosophila melanogaster]
gi|16197897|gb|AAL13706.1| GH28335p [Drosophila melanogaster]
gi|158030317|gb|AAN13833.2| syncrip, isoform C [Drosophila melanogaster]
gi|220945692|gb|ACL85389.1| CG17838-PC [synthetic construct]
gi|220955464|gb|ACL90275.1| CG17838-PC [synthetic construct]
Length = 529
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 13/204 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK+ G S +N LFVGNI ++ + ++ + G+ + + S + +RGF
Sbjct: 232 TGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHA-PGLYEVIIYSSPDDKKKNRGF 290
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++ +
Sbjct: 291 CFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRNL 347
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E+++++Q + YG V R+ K KDY FI F ++AV + +N KE
Sbjct: 348 TQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEIG 399
Query: 197 DGNSKVKLRARLSNPMPKTQAVKG 220
N +V L S+ K + ++
Sbjct: 400 ASNIEVSLAKPPSDKKKKEEILRA 423
>gi|41054427|ref|NP_955973.1| synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
gi|28422490|gb|AAH46902.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TK+ I ++ EG+ ++ L + +RGF
Sbjct: 232 GKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKV-TEGLNDVILYHQPDDKKKNRGFC 290
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 291 FLGYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVKVLFVRNLA 347
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + ++ K+
Sbjct: 348 STVTEELLEKTFCQFGKLERV--------KKLKDYAFIHFEERDGAVKALAELHGKDLE 398
>gi|115481262|ref|NP_001064224.1| Os10g0167500 [Oryza sativa Japonica Group]
gi|113638833|dbj|BAF26138.1| Os10g0167500 [Oryza sativa Japonica Group]
Length = 703
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 18/202 (8%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LFVG + +E I+ G VE+I +V + AFV ++ D A
Sbjct: 256 LFVGGLPKDCVEEDIRVVFSQCG--EVESIRIVKKRKR------IAFVRYA---DISATK 304
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREP-DPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K L + ++V+V+ AEP R+ + + + VKTV+L+ P W E I + +G
Sbjct: 305 KALTEFKDGIKVNGKSVRVSVAEPHRKSSEQKALTKVKTVYLEHFPRSWDERNIEECCEG 364
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 211
YG++ ++ N+ +K+K F++FS+ ++A+AC+ I+ + +D +VKL A L+ P
Sbjct: 365 YGNIQKV----NILRSKKKVVSFVEFSSRKSALACVEGISKAKIND--REVKLAASLARP 418
Query: 212 MPKTQAVKGGMSGGFRIGHGSS 233
K Q GGF + G++
Sbjct: 419 QSKVQLANESSKGGFNVHSGAT 440
>gi|334186264|ref|NP_001190648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656543|gb|AEE81943.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 84/156 (53%), Gaps = 6/156 (3%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+GNI WT++ ++ ++D G GVENI L+ D + +RGFAFV++ + +A A Y
Sbjct: 198 LFIGNIPKNWTEDEFRKVIEDVG-PGVENIELIKDPTNTTRNRGFAFVLY--YNNACADY 254
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
R + D F V +A+P P+ A VK +++ +P + Q+++ +
Sbjct: 255 SRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQR 314
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
+G+V +IV ++D+GF+ ++ +A+ +
Sbjct: 315 HGEVTKIVTPP--GKGGKRDFGFVHYAERSSALKAV 348
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 186
H VF+ G+P E +RD + G++ + L ++ + K Y F+ F T + A
Sbjct: 114 HGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 173
Query: 187 INAINNKEF---SDGNSKVKLRARL 208
I +++KEF S N + L RL
Sbjct: 174 IEELHSKEFKASSTANCSLSLSNRL 198
>gi|33874520|gb|AAH15575.1| SYNCRIP protein, partial [Homo sapiens]
Length = 417
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 13/185 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 231 GKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFC 289
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 290 FLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNLA 346
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 347 NTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 398
Query: 198 GNSKV 202
N ++
Sbjct: 399 ENIEI 403
>gi|149018946|gb|EDL77587.1| rCG25340, isoform CRA_c [Rattus norvegicus]
gi|149018949|gb|EDL77590.1| rCG25340, isoform CRA_c [Rattus norvegicus]
Length = 462
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 13/185 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 133 GKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFC 191
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 192 FLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNLA 248
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 249 NTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300
Query: 198 GNSKV 202
N ++
Sbjct: 301 ENIEI 305
>gi|260791540|ref|XP_002590787.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
gi|229275983|gb|EEN46798.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
Length = 637
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 16/189 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
G+ G S N+ LFVG+I +K+ I ++G G++++ + + + +RG
Sbjct: 223 GRWLGVCISVANNRLFVGSIPKNKSKQEI---FDEFGKVTNGLKDVIIYYMPEDKRKNRG 279
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
FAF+ + H +A A +RL + V+G+ TV V +A+P+ EPD E+M+ VK +++
Sbjct: 280 FAFLEYLSHKEASLARRRLMSGRIKVWGNI--TVTVDWADPIEEPDDEVMSKVKVLYVRN 337
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E I+ + + YG V R+ K KDY F+ F E A+ + +N KE
Sbjct: 338 LAVEAAEEIIQAKFEPYGTVERV--------KKIKDYAFVHFENREDAIKAMEDLNGKEL 389
Query: 196 SDGNSKVKL 204
++ L
Sbjct: 390 EGSAMEISL 398
>gi|357161949|ref|XP_003579258.1| PREDICTED: uncharacterized protein LOC100834061 [Brachypodium
distachyon]
Length = 668
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 22/208 (10%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWT----KEAIKQKLKDY-GVEGVENINLVSDIQH 70
++ GKR S D DTLF GN+C W+ +E I + KD V+ NL S
Sbjct: 134 ELQGKRLAVDLSLDQDTLFFGNLCKEWSVEEFEELIHKTFKDVISVDLATASNLDSSTSK 193
Query: 71 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG---HPERTVKVAFAEPLREPDPEIMAH 127
L+RGFAFV FS H A + + D + G HP + +AE D MA
Sbjct: 194 RRLNRGFAFVRFSSHGAAARVLRIGSRTDFLLGGVLHP----AINWAERESNVDAGEMAK 249
Query: 128 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDY--GFIDFSTHEAAVA 185
+KT F+ +P + E+ ++ +G+V+R+ ++R + +Y GFI F +
Sbjct: 250 IKTAFVGNLPANVNEDYLKKLFGRFGEVVRVAVSR------KGEYPVGFIHFGSRSELDN 303
Query: 186 CINAINNKEFS--DGNSKVKLRARLSNP 211
I ++ K S D K++ ++ P
Sbjct: 304 AIKEMDGKTVSGPDRGPAFKIQVSVARP 331
>gi|224130652|ref|XP_002320894.1| predicted protein [Populus trichocarpa]
gi|222861667|gb|EEE99209.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 118/271 (43%), Gaps = 28/271 (10%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K GK + SE + LF+GN+ T++ ++ +++ G GVE I L+ D Q +
Sbjct: 170 KDYKGKTLRCSISETKNRLFIGNVPKNLTEDEFRKIIEEVG-PGVEVIELIKDPQTPTRN 228
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA--HVKTVF 132
RGFAF+++ + +A A Y R + + F T V++A+P P A VK ++
Sbjct: 229 RGFAFILY--YNNACADYSRQKMLNANFKLDGHTPTVSWADPKGTPPDHSAASSQVKALY 286
Query: 133 LDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 192
+ +P + Q++ + +GDV ++V+ A ++D+GFI ++ +A+ +
Sbjct: 287 VKNIPENTSTEQLKGLFQRHGDVTKVVMPP--GKAGKRDFGFIHYAERSSALKAVRDAEK 344
Query: 193 KEFSDGNSKVKLRARLSN------------------PMPKTQAVKGGMSGGFRIGHGSSR 234
E +V L ++ P+P G G G G +
Sbjct: 345 YEIDGQVLEVVLAKPQADKKPDAAYPYNAGVHPNPVPLPAYSGFAGNPYGSLGTGFGVAS 404
Query: 235 TFSR---YGRGSGRAGHHFNRANFQRGRGFY 262
+F + YGRG AG H GR Y
Sbjct: 405 SFQQPVIYGRGPMPAGMHMVPMVLPDGRIGY 435
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 106 ERTVKVAFAEPLREPDPEIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLAR 162
E+ + E +E +++A H VF+ G+P E+++RD + G++ I L +
Sbjct: 80 EQKPTASVNEEEKEKHAQLLALPPHGSEVFIGGLPRDVIEDELRDLCEPIGEIFEIRLMK 139
Query: 163 NMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ + + K + F+ F + E A I +++K++
Sbjct: 140 DKDSGESKGFAFVAFKSKEVARKAIEELHSKDY 172
>gi|195055139|ref|XP_001994478.1| GH17270 [Drosophila grimshawi]
gi|193892241|gb|EDV91107.1| GH17270 [Drosophila grimshawi]
Length = 532
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 13/203 (6%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK+ G S +N LFVGNI ++ + ++ + G+ + + S + +RGF
Sbjct: 236 GKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHA-PGLYEVIIYSSPDDKKKNRGFC 294
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++ +
Sbjct: 295 FLEYDSHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRNLT 351
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+++++Q + YG V R+ K KDY FI F ++AV + +N KE
Sbjct: 352 QDVTEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEVGA 403
Query: 198 GNSKVKLRARLSNPMPKTQAVKG 220
N +V L S+ K + ++
Sbjct: 404 SNIEVSLAKPPSDKKKKEEILRA 426
>gi|149018945|gb|EDL77586.1| rCG25340, isoform CRA_b [Rattus norvegicus]
gi|149018948|gb|EDL77589.1| rCG25340, isoform CRA_b [Rattus norvegicus]
Length = 458
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 13/185 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 133 GKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFC 191
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 192 FLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNLA 248
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 249 NTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300
Query: 198 GNSKV 202
N ++
Sbjct: 301 ENIEI 305
>gi|198418309|ref|XP_002123977.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein R
[Ciona intestinalis]
Length = 581
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 13/214 (6%)
Query: 20 KRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAF 79
K G S+ N LFVG+I T TK+ I ++ D +G++++ + + + +RGF F
Sbjct: 232 KFLGVCVSQSNCRLFVGSIPKTKTKDEIFEEF-DGITQGLKDVIIYLQTEDKMKNRGFCF 290
Query: 80 VMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
+ ++ H A A +RL V F + TV V +A+P+ EP EIM+ VK +++ +
Sbjct: 291 LEYTDHKAASQARRRLSSVKVKAFNN---TVSVDWADPVEEPSDEIMSKVKVLYIKNLSM 347
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198
E + YG+V R+ K KDY F+ F + A+ + +N
Sbjct: 348 KATEEIVMATFSAYGEVERV--------KKIKDYAFVHFKERDNAMKALEELNGLNLEGE 399
Query: 199 NSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGS 232
++ L + + Q + M+ + +G+G+
Sbjct: 400 AIEISLAKPVDKKKKERQMERKMMTHAYGMGYGN 433
>gi|442620149|ref|NP_001262778.1| syncrip, isoform K [Drosophila melanogaster]
gi|440217679|gb|AGB96158.1| syncrip, isoform K [Drosophila melanogaster]
Length = 753
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 17/205 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + K+ I L+++G G+ + + S + +RG
Sbjct: 267 GKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRG 323
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 324 FCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRN 380
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E+++++Q + YG V R+ K KDY FI F ++AV + +N KE
Sbjct: 381 LTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEI 432
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKG 220
N +V L S+ K + ++
Sbjct: 433 GASNIEVSLAKPPSDKKKKEEILRA 457
>gi|340382530|ref|XP_003389772.1| PREDICTED: APOBEC1 complementation factor-like [Amphimedon
queenslandica]
Length = 599
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 19/200 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I TKE I+++++ +GV +I + + +RGFA
Sbjct: 101 GRTIGVCMSVDNCRLFVGGIPKCLTKENIREEMEKV-TDGVADIIMYPAASDKSKNRGFA 159
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV ++ H A A ++L V ++ H V V +AEP E D E MA VK +++ +
Sbjct: 160 FVEYASHRAAAMARRKLINSRVRLWNH---VVAVDWAEPELEVDEETMATVKILYVRNLM 216
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E Q+ + V R+ K +DY F+ F++ A+ + A+N D
Sbjct: 217 LTTTEAQLNKAFSHHAPVERV--------KKIRDYAFVHFNSRSGALTAMKAMNGSVLDD 268
Query: 198 GNSKVKL------RARLSNP 211
+V L A++ NP
Sbjct: 269 AVIEVTLAKPVDKEAQMRNP 288
>gi|195569361|ref|XP_002102678.1| GD19374 [Drosophila simulans]
gi|194198605|gb|EDX12181.1| GD19374 [Drosophila simulans]
Length = 350
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 17/205 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + K+ I L+++G G+ + + S + +RG
Sbjct: 13 GKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRG 69
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 70 FCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRN 126
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E+++++Q + YG V R+ K KDY FI F ++AV + +N KE
Sbjct: 127 LTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEI 178
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKG 220
N +V L S+ K + ++
Sbjct: 179 GASNIEVSLAKPPSDKKKKEEILRA 203
>gi|291396564|ref|XP_002714606.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Oryctolagus cuniculus]
Length = 563
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 14/187 (7%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHV-KTVFLDG 135
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA V K +F+
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVMKVLFVRN 345
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 LANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDL 397
Query: 196 SDGNSKV 202
N ++
Sbjct: 398 EGENIEI 404
>gi|37681889|gb|AAQ97822.1| NS1-associated protein 1 [Danio rerio]
Length = 558
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TK+ I ++ EG+ ++ L + +RGF
Sbjct: 232 GKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKV-TEGLNDVILYHQPDDKKKNRGFC 290
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 291 FLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVKVLFVRNLA 347
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + ++ K+
Sbjct: 348 STVTEELLEKTFCQFGKLERV--------KKLKDYAFIHFEERDGAVKALAELHGKDLE 398
>gi|410974963|ref|XP_003993908.1| PREDICTED: LOW QUALITY PROTEIN: APOBEC1 complementation factor
[Felis catus]
Length = 592
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 96/204 (47%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TEGVVDVIVYPSAADKSRNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRTAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS+ E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSSREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|195353891|ref|XP_002043435.1| GM23135 [Drosophila sechellia]
gi|194127576|gb|EDW49619.1| GM23135 [Drosophila sechellia]
Length = 745
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 17/205 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + K+ I L+++G G+ + + S + +RG
Sbjct: 275 GKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRG 331
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 332 FCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRN 388
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E+++++Q + YG V R+ K KDY FI F ++AV + +N KE
Sbjct: 389 LTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEI 440
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKG 220
N +V L S+ K + ++
Sbjct: 441 GASNIEVSLAKPPSDKKKKEEILRA 465
>gi|449518867|ref|XP_004166457.1| PREDICTED: uncharacterized protein LOC101228216 [Cucumis sativus]
Length = 828
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 99/193 (51%), Gaps = 8/193 (4%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK+ + S+ LF+GN+ +W +E +K+ + + G GV + LV D+++ +RGFA
Sbjct: 507 GKKIKCSSSQAKHRLFIGNVPRSWGEEDLKKVVTEIG-PGVTAVELVKDMKNTSNNRGFA 565
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
F+ + H A A Y R + + F + V++A+P + D + VK V++ +P
Sbjct: 566 FIDYYNH--ACAEYSRQKMMNPKFKLDDNAPTVSWADP-KNADSSAASQVKAVYVKNLPK 622
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198
+ + Q++ +G + ++VL S ++ GF+ FS +A + A+ N E +
Sbjct: 623 NVTQEQLKKLFDHHGKITKVVLPPAKSGQEKNRIGFVHFSERSSA---MKALKNTEKYEL 679
Query: 199 NSKVKLRARLSNP 211
+ +V L L+ P
Sbjct: 680 DGQV-LECSLAKP 691
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 123 EIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 179
E++A H V++ G+P E+ +R + G+V + + R+ + + K + F+ F +
Sbjct: 430 ELLALPPHGSEVYVGGIPQDSSEDDLRRFCESIGEVTEVRVMRSKESNENKGFAFVTFRS 489
Query: 180 HEAAVACINAINNKEF 195
E A I+ +NN EF
Sbjct: 490 VELASKAIDELNNTEF 505
>gi|449444797|ref|XP_004140160.1| PREDICTED: uncharacterized protein LOC101218373 [Cucumis sativus]
Length = 784
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 99/193 (51%), Gaps = 8/193 (4%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK+ + S+ LF+GN+ +W +E +K+ + + G GV + LV D+++ +RGFA
Sbjct: 463 GKKIKCSSSQAKHRLFIGNVPRSWGEEDLKKVVTEIG-PGVTAVELVKDMKNTSNNRGFA 521
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
F+ + H A A Y R + + F + V++A+P + D + VK V++ +P
Sbjct: 522 FIDYYNH--ACAEYSRQKMMNPKFKLDDNAPTVSWADP-KNADSSAASQVKAVYVKNLPK 578
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198
+ + Q++ +G + ++VL S ++ GF+ FS +A + A+ N E +
Sbjct: 579 NVTQEQLKKLFDHHGKITKVVLPPAKSGQEKNRIGFVHFSERSSA---MKALKNTEKYEL 635
Query: 199 NSKVKLRARLSNP 211
+ +V L L+ P
Sbjct: 636 DGQV-LECSLAKP 647
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 123 EIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 179
E++A H V++ G+P E+ +R + G+V + + R+ + + K + F+ F +
Sbjct: 386 ELLALPPHGSEVYVGGIPQDSSEDDLRRFCESIGEVTEVRVMRSKESNENKGFAFVTFRS 445
Query: 180 HEAAVACINAINNKEF 195
E A I+ +NN EF
Sbjct: 446 VELASKAIDELNNTEF 461
>gi|380011709|ref|XP_003689940.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q-like [Apis florea]
Length = 667
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 98/202 (48%), Gaps = 13/202 (6%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK+ G S +N LFVGNI ++ + ++ + G+ + + S + +RGF
Sbjct: 232 GKKIGVTVSYNNHRLFVGNIPKNRDRDDLFEEFTKH-APGLTEVIIYSSPDDKKKNRGFC 290
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL + V+G + V +A+P EPD + M+ V+ +++ +
Sbjct: 291 FLEYESHKAASLAKRRLSTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVRVLYVKNLT 347
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E ++++ + YG++ R+ K KDY F+ F + AV +N +N KE
Sbjct: 348 QDCSEEKLKESFEQYGNIERV--------KKIKDYAFVHFEERDNAVKAMNELNGKEIGG 399
Query: 198 GNSKVKLRARLSNPMPKTQAVK 219
+ +V L S+ K + ++
Sbjct: 400 SHIEVSLAKPPSDKKKKEEMLR 421
>gi|442620161|ref|NP_001262783.1| syncrip, isoform Q [Drosophila melanogaster]
gi|440217685|gb|AGB96163.1| syncrip, isoform Q [Drosophila melanogaster]
Length = 761
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 17/205 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + K+ I L+++G G+ + + S + +RG
Sbjct: 275 GKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRG 331
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 332 FCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRN 388
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E+++++Q + YG V R+ K KDY FI F ++AV + +N KE
Sbjct: 389 LTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEI 440
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKG 220
N +V L S+ K + ++
Sbjct: 441 GASNIEVSLAKPPSDKKKKEEILRA 465
>gi|161078444|ref|NP_650913.2| syncrip, isoform B [Drosophila melanogaster]
gi|442620151|ref|NP_001097848.2| syncrip, isoform L [Drosophila melanogaster]
gi|158030316|gb|AAN13835.2| syncrip, isoform B [Drosophila melanogaster]
gi|440217680|gb|ABW08710.2| syncrip, isoform L [Drosophila melanogaster]
Length = 711
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 17/205 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + K+ I L+++G G+ + + S + +RG
Sbjct: 233 GKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRG 289
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 290 FCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRN 346
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E+++++Q + YG V R+ K KDY FI F ++AV + +N KE
Sbjct: 347 LTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEI 398
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKG 220
N +V L S+ K + ++
Sbjct: 399 GASNIEVSLAKPPSDKKKKEEILRA 423
>gi|442620155|ref|NP_001262780.1| syncrip, isoform N [Drosophila melanogaster]
gi|442620159|ref|NP_001262782.1| syncrip, isoform P [Drosophila melanogaster]
gi|440217682|gb|AGB96160.1| syncrip, isoform N [Drosophila melanogaster]
gi|440217684|gb|AGB96162.1| syncrip, isoform P [Drosophila melanogaster]
Length = 665
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 17/205 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + K+ I L+++G G+ + + S + +RG
Sbjct: 233 GKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRG 289
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 290 FCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRN 346
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E+++++Q + YG V R+ K KDY FI F ++AV + +N KE
Sbjct: 347 LTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEI 398
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKG 220
N +V L S+ K + ++
Sbjct: 399 GASNIEVSLAKPPSDKKKKEEILRA 423
>gi|383847619|ref|XP_003699450.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Megachile rotundata]
Length = 664
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 103/218 (47%), Gaps = 17/218 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + KE I L+++G G+ + + S + +RG
Sbjct: 232 GKNLKVNISVPNLRLFVGNIPKSKGKEEI---LEEFGKLTAGLTEVIIYSSPDDKKKNRG 288
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ V+ +++
Sbjct: 289 FCFLEYESHKAASLAKRRLSTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVRVLYVKN 345
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E ++++ + YG++ R+ K KDY F+ F + AV +N +N KE
Sbjct: 346 LTQDCSEEKLKEVFEQYGNIERV--------KKIKDYAFVHFEERDNAVKAMNELNGKEI 397
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSS 233
+ +V L S+ K + ++ F++ G S
Sbjct: 398 GGSHIEVSLAKPPSDKKKKEEMLRARERRMFQMFQGRS 435
>gi|270001371|gb|EEZ97818.1| hypothetical protein TcasGA2_TC000185 [Tribolium castaneum]
Length = 638
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 106/241 (43%), Gaps = 32/241 (13%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + KE I L+++G G+ + + S + +RG
Sbjct: 246 GKTLKINISVPNLRLFVGNIPKSKGKEEI---LEEFGKLTAGLVEVIIYSSPDDKKKNRG 302
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 303 FCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRN 359
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E ++++ + YG V R+ K KDY FI F E AV + ++ KE
Sbjct: 360 LTQEISEEKLKEAFEAYGKVERV--------KKIKDYAFIHFEDRENAVKAMEELDGKEM 411
Query: 196 SDGNSKVK--------------LRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGR 241
N +V LRAR M Q V+GGM G G +R G
Sbjct: 412 GGSNIEVSLAKPPSDKKKKEEILRARERRMMQMMQ-VRGGMMPGAMPLRGPPGQGARSGA 470
Query: 242 G 242
G
Sbjct: 471 G 471
>gi|403260036|ref|XP_003922494.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Saimiri
boliviensis boliviensis]
Length = 559
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 126/303 (41%), Gaps = 49/303 (16%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 98 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 156
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 157 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 213
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 214 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 265
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF 255
DG+ + L+ P+ K ++ RY RG+G R
Sbjct: 266 -DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG------GRGTM 296
Query: 256 QRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGYNAPS-RAA 310
+G Y G+ + ++ +G + Y F +G S R APS R A
Sbjct: 297 LQGEYTYSLGQVYDPTTTYLGAPVFYAPQAYAAIPSLHFPATKGHLSNRAIIRAPSVRGA 356
Query: 311 AGA 313
AG
Sbjct: 357 AGV 359
>gi|297301400|ref|XP_001100328.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Macaca
mulatta]
gi|402880834|ref|XP_003903994.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Papio anubis]
Length = 558
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 126/303 (41%), Gaps = 49/303 (16%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 98 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 156
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 157 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 213
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 214 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 265
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF 255
DG+ + L+ P+ K ++ RY RG+G R
Sbjct: 266 -DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG------GRGTM 296
Query: 256 QRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGYNAPS-RAA 310
+G Y G+ + ++ +G + Y F +G S R APS R A
Sbjct: 297 LQGEYTYSLGQVYDPTTTYLGAPVFYAPQAYAAIPSLHFPATKGHLSNRAIIRAPSIRGA 356
Query: 311 AGA 313
AG
Sbjct: 357 AGV 359
>gi|332212196|ref|XP_003255205.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Nomascus
leucogenys]
Length = 587
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 126/303 (41%), Gaps = 49/303 (16%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF 255
DG+ + L+ P+ K ++ RY RG+G R
Sbjct: 292 -DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG------GRGTM 322
Query: 256 QRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGYNAPS-RAA 310
+G Y G+ + ++ +G + Y F +G S R APS R A
Sbjct: 323 LQGEYTYSLGQVYDPTTTYLGAPVFYAPQAYAAIPSLHFPATKGHLSNRAIIRAPSVRGA 382
Query: 311 AGA 313
AG
Sbjct: 383 AGV 385
>gi|197099260|ref|NP_001127437.1| APOBEC1 complementation factor [Pongo abelii]
gi|75070678|sp|Q5R9H4.1|A1CF_PONAB RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|55729715|emb|CAH91586.1| hypothetical protein [Pongo abelii]
Length = 587
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 126/303 (41%), Gaps = 49/303 (16%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF 255
DG+ + L+ P+ K ++ RY RG+G R
Sbjct: 292 -DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG------GRGTM 322
Query: 256 QRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGYNAPS-RAA 310
+G Y G+ + ++ +G + Y F +G S R APS R A
Sbjct: 323 LQGEYTYSLGQVYDPTTTYLGAPVFYAPQAYAAIPSLHFPATKGHLSNRAIIRAPSVRGA 382
Query: 311 AGA 313
AG
Sbjct: 383 AGV 385
>gi|242080305|ref|XP_002444921.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
gi|241941271|gb|EES14416.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
Length = 484
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 7/202 (3%)
Query: 21 RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
RC S+ LF+GN+ ++E + +K G GV NI + D +RGF FV
Sbjct: 191 RCSL--SQAKHRLFIGNVPKGLSEEELTNIIKGKG-PGVVNIEMFKDQHDPNRNRGFLFV 247
Query: 81 MFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE-IMAHVKTVFLDGVPPH 139
+ H A A Y RL+ F + V++AEP + DP A VKT+++ +P +
Sbjct: 248 EYYNH--ACAEYARLKLSSRNFKVDGSQLTVSWAEPKGQTDPSSAAAQVKTIYVKNLPEN 305
Query: 140 WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 199
+ +I+D +G+V +IVL + KR D+GF+ F+ +A+ + E
Sbjct: 306 VSKEKIKDLFDKHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKGSEKYEIDGQV 364
Query: 200 SKVKLRARLSNPMPKTQAVKGG 221
+V + L++ P GG
Sbjct: 365 LEVSMAKPLADKKPDHSHRSGG 386
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 123 EIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 179
E++A H VF+ G+P E+ +R+ + G++ + L ++ T + K + F+ F+
Sbjct: 110 ELLALPPHGSQVFIGGLPRDITEDDLRELCEPLGEIYEVRLTKDKDTNENKGFAFVTFTD 169
Query: 180 HEAAVACINAINNKEF 195
+AA I + ++E+
Sbjct: 170 KDAAQRAIEDVQDREY 185
>gi|28317322|gb|AAO39657.1| AT01548p, partial [Drosophila melanogaster]
Length = 626
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 17/205 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + K+ I L+++G G+ + + S + +RG
Sbjct: 194 GKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRG 250
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 251 FCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRN 307
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E+++++Q + YG V R+ K KDY FI F ++AV + +N KE
Sbjct: 308 LTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEI 359
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKG 220
N +V L S+ K + ++
Sbjct: 360 GASNIEVSLAKPPSDKKKKEEILRA 384
>gi|328789990|ref|XP_392307.4| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Apis
mellifera]
Length = 664
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 17/204 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + KE I L+++G G+ + + S + +RG
Sbjct: 232 GKNLKVNISVPNLRLFVGNIPKSKGKEEI---LEEFGKLTAGLTEVIIYSSPDDKKKNRG 288
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ V+ +++
Sbjct: 289 FCFLEYESHKAASLAKRRLSTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVRVLYVKN 345
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E ++++ + YG++ R+ K KDY F+ F + AV +N +N KE
Sbjct: 346 LTQDCSEEKLKESFEQYGNIERV--------KKIKDYAFVHFEERDNAVKAMNELNGKEI 397
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
+ +V L S+ K + ++
Sbjct: 398 GGSHIEVSLAKPPSDKKKKEEMLR 421
>gi|296220673|ref|XP_002756407.1| PREDICTED: APOBEC1 complementation factor isoform 4 [Callithrix
jacchus]
Length = 560
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 126/303 (41%), Gaps = 49/303 (16%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 98 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 156
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 157 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 213
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 214 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 265
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF 255
DG+ + L+ P+ K ++ RY RG+G R
Sbjct: 266 -DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG------GRGTM 296
Query: 256 QRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGYNAPS-RAA 310
+G Y G+ + ++ +G + Y F +G S R APS R A
Sbjct: 297 LQGEYTYSLGQVYDPTTTYLGAPVFYAPQAYAAIPSLHFPATKGHLSNRAIIRAPSVRGA 356
Query: 311 AGA 313
AG
Sbjct: 357 AGV 359
>gi|350409228|ref|XP_003488661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Bombus
impatiens]
Length = 664
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 17/204 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + KE I L+++G G+ + + S + +RG
Sbjct: 232 GKNLKVNISVPNLRLFVGNIPKSKGKEEI---LEEFGKLTAGLTEVIIYSSPDDKKKNRG 288
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ V+ +++
Sbjct: 289 FCFLEYESHKAASLAKRRLSTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVRVLYVKN 345
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E ++++ + YG++ R+ K KDY F+ F + AV +N +N KE
Sbjct: 346 LTQDCSEEKLKESFEQYGNIERV--------KKIKDYAFVHFEERDNAVKAMNELNGKEI 397
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
+ +V L S+ K + ++
Sbjct: 398 GGSHIEVSLAKPPSDKKKKEEMLR 421
>gi|195498304|ref|XP_002096465.1| GE25686 [Drosophila yakuba]
gi|194182566|gb|EDW96177.1| GE25686 [Drosophila yakuba]
Length = 747
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 17/194 (8%)
Query: 30 NDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
N LFVGNI + K+ I L+++G G+ + + S + +RGF F+ + H
Sbjct: 282 NLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKA 338
Query: 88 AMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
A A +RL + V+G + V +A+P EPD + M+ VK +++ + E++++
Sbjct: 339 ASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLK 395
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206
+Q + YG V R+ K KDY FI F ++AV + +N KE N +V L
Sbjct: 396 EQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAK 447
Query: 207 RLSNPMPKTQAVKG 220
S+ K + ++
Sbjct: 448 PPSDKKKKEEILRA 461
>gi|24648522|ref|NP_732556.1| syncrip, isoform D [Drosophila melanogaster]
gi|23171809|gb|AAF55805.2| syncrip, isoform D [Drosophila melanogaster]
Length = 707
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 17/205 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + K+ I L+++G G+ + + S + +RG
Sbjct: 275 GKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRG 331
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 332 FCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRN 388
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E+++++Q + YG V R+ K KDY FI F ++AV + +N KE
Sbjct: 389 LTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEI 440
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKG 220
N +V L S+ K + ++
Sbjct: 441 GASNIEVSLAKPPSDKKKKEEILRA 465
>gi|395501464|ref|XP_003755115.1| PREDICTED: APOBEC1 complementation factor [Sarcophilus harrisii]
Length = 593
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 97/205 (47%), Gaps = 21/205 (10%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G PS DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCPSVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AM K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMGRRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIR---DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
E I D IK G V R+ K +DY F+ F+ E AV + A+N K
Sbjct: 240 LSTSEETIEKEFDSIKP-GSVERV--------KKIRDYAFVHFNNREDAVNAMKALNGKV 290
Query: 195 FSDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 291 L-DGSP---IEVTLAKPVDKDSYVR 311
>gi|296195353|ref|XP_002745373.1| PREDICTED: probable RNA-binding protein 46 [Callithrix jacchus]
Length = 485
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 100/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K F
Sbjct: 245 ISTTEETIKAEFNKFKPGTVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGK-F 295
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 296 IDGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|195449649|ref|XP_002072163.1| GK22469 [Drosophila willistoni]
gi|194168248|gb|EDW83149.1| GK22469 [Drosophila willistoni]
Length = 731
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 17/194 (8%)
Query: 30 NDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
N LFVGNI + K+ I L+++G G+ + + S + +RGF F+ + H
Sbjct: 247 NLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYDSHKA 303
Query: 88 AMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
A A +RL + V+G + V +A+P EPD + M+ VK +++ + E++++
Sbjct: 304 ASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLK 360
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206
+Q + YG V R+ K KDY FI F ++AV + +N KE N +V L
Sbjct: 361 EQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAK 412
Query: 207 RLSNPMPKTQAVKG 220
S+ K + ++
Sbjct: 413 PPSDKKKKEEILRA 426
>gi|73995985|ref|XP_861026.1| PREDICTED: APOBEC1 complementation factor isoform 3 [Canis lupus
familiaris]
Length = 582
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TEGVVDVIVYPSAADKTRNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRTAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKML 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|73995983|ref|XP_534776.2| PREDICTED: APOBEC1 complementation factor isoform 1 [Canis lupus
familiaris]
Length = 590
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TEGVVDVIVYPSAADKTRNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRTAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKML 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|298709522|emb|CBJ48537.1| conserved unknown protein (Partial) [Ectocarpus siliculosus]
Length = 579
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 17/184 (9%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEG 72
KQ+ R PS + +TLF+G + TW KE + LK++ V+G+ N + D ++
Sbjct: 348 KQLLTAR----PSGNPNTLFIGGLNRTWKKETV---LKEFEKEVDGIVNFEVTMDALNKN 400
Query: 73 LSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL-REPDPEIMAHVKTV 131
L+RGF F F AA+ + K + E V + +AE + D E + V
Sbjct: 401 LNRGFGFATFKDVDSCKAAHAKYYKDKLTI--LENKVLIDWAETRGNKQDDE-----RGV 453
Query: 132 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191
++ G+ E +R YG ++++V+ + TA+RKD+ I++S EAA CI +++
Sbjct: 454 YITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSAAEAAKTCIESMH 513
Query: 192 NKEF 195
+F
Sbjct: 514 GTDF 517
>gi|444512913|gb|ELV10212.1| APOBEC1 complementation factor [Tupaia chinensis]
Length = 598
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 127 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 185
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 186 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 242
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 243 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKML 294
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 295 -DGSP---IEVTLAKPVDKDSYVR 314
>gi|355562596|gb|EHH19190.1| hypothetical protein EGK_19855 [Macaca mulatta]
Length = 592
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|403260038|ref|XP_003922495.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Saimiri
boliviensis boliviensis]
Length = 593
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|109089789|ref|XP_001100059.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Macaca
mulatta]
gi|402880832|ref|XP_003903993.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Papio anubis]
Length = 592
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|296220667|ref|XP_002756404.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Callithrix
jacchus]
Length = 594
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|45551939|ref|NP_732557.2| syncrip, isoform A [Drosophila melanogaster]
gi|45446567|gb|AAN13832.2| syncrip, isoform A [Drosophila melanogaster]
Length = 563
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 17/205 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + K+ I L+++G G+ + + S + +RG
Sbjct: 267 GKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRG 323
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 324 FCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRN 380
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E+++++Q + YG V R+ K KDY FI F ++AV + +N KE
Sbjct: 381 LTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEI 432
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKG 220
N +V L S+ K + ++
Sbjct: 433 GASNIEVSLAKPPSDKKKKEEILRA 457
>gi|307173250|gb|EFN64303.1| Heterogeneous nuclear ribonucleoprotein Q [Camponotus floridanus]
Length = 683
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 17/204 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + KE I L+++G G+ + + S + +RG
Sbjct: 229 GKSLKVNISVPNLRLFVGNIPKSKGKEEI---LEEFGKLTAGLTEVIIYSSPDDKKKNRG 285
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ V+ +++
Sbjct: 286 FCFLEYESHKAASLAKRRLSTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVRVLYVRN 342
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E ++++ + YG + R+ K KDY FI F + AV +N +N KE
Sbjct: 343 LTQDCSEEKLKESFEQYGKIERV--------KKIKDYAFIHFEDRDNAVKAMNELNGKEM 394
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
+ +V L S+ K + ++
Sbjct: 395 GGSHIEVSLAKPPSDKKKKEEMLR 418
>gi|198450702|ref|XP_002137140.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|198131152|gb|EDY67698.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 674
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 17/194 (8%)
Query: 30 NDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
N LFVGNI + K+ I L+++G G+ + + S + +RGF F+ + H
Sbjct: 247 NLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKA 303
Query: 88 AMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
A A +RL + V+G + V +A+P EPD + M+ VK +++ + E +++
Sbjct: 304 ASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVTEEKLK 360
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206
+Q + YG V R+ K KDY FI F ++AV + +N KE N +V L
Sbjct: 361 EQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAK 412
Query: 207 RLSNPMPKTQAVKG 220
S+ K + ++
Sbjct: 413 PPSDKKKKEEILRA 426
>gi|68369598|ref|XP_707799.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Danio rerio]
Length = 586
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 88/189 (46%), Gaps = 15/189 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K +GV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVLDVIVYPSAADKAKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + MA VK +++ +
Sbjct: 183 FVEYETHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMATVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E A+ +NA+N K
Sbjct: 240 LPTTEETIEKEFNSIKPGAVERV--------KKIRDYAFVHFSQREDAINAMNALNGKVI 291
Query: 196 SDGNSKVKL 204
+V L
Sbjct: 292 DGSPIEVTL 300
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 22/162 (13%)
Query: 25 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC 84
+P E +FVG + ++ + + +G + + ++ D G +RG+AFV FS
Sbjct: 50 SPPERGSEIFVGKLPRDLFEDELVPLCEKFG--KIYEVRMMMDFN--GNNRGYAFVTFST 105
Query: 85 HVDAMAAYKRLQKPDVVFGHPERTVKV-AFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
+A A K+L ++ G R + V A + R +F+ G+P K
Sbjct: 106 KQEAKNAMKQLNNYEIRNG---RLLGVCASVDNCR------------LFVGGIPKTKKRE 150
Query: 144 QIRDQIKGYGDVIR--IVLARNMSTAKRKDYGFIDFSTHEAA 183
+I ++K D + IV AK + + F+++ TH AA
Sbjct: 151 EILAEMKKVTDGVLDVIVYPSAADKAKNRGFAFVEYETHRAA 192
>gi|356503817|ref|XP_003520699.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Glycine max]
Length = 464
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 104/198 (52%), Gaps = 8/198 (4%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GKR + S+ LF+GN+ WT+ +K+ + + G GV + L+ D Q+ +RG+A
Sbjct: 171 GKRIKCSTSQVKHKLFIGNVPKYWTEGDMKKVVAEIG-PGVICVELLKDPQNSSRNRGYA 229
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
F+ + H A A Y R + + F V++A+P R + ++ VK+V++ +P
Sbjct: 230 FIEYYNH--ACAEYSRQKMSNSNFKLGSNAPTVSWADP-RNSESSAISLVKSVYVKNLPE 286
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198
+ ++++++ + +G + ++VL S ++ +GF+ F+ +A + A+ N E +
Sbjct: 287 NITQDRLKELFEHHGKITKVVLPSAKSGQEKSRFGFVHFAERSSA---MKALKNTEKYEI 343
Query: 199 NSKVKLRARLSNPMPKTQ 216
+ ++ L L+ P +Q
Sbjct: 344 DGQL-LECSLAKPQANSQ 360
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 123 EIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 179
E++A H V++ G+P + E +R + G+V + + + + + K Y F+ F T
Sbjct: 94 ELLALPPHGSEVYIGGIPQNVSEEDLRVFCQSVGEVSEVRIMKGKESGEAKGYAFVTFMT 153
Query: 180 HEAAVACINAINNKEF 195
E A I +NN EF
Sbjct: 154 KELASKAIEELNNSEF 169
>gi|332026895|gb|EGI66996.1| Heterogeneous nuclear ribonucleoprotein Q [Acromyrmex echinatior]
Length = 724
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 97/202 (48%), Gaps = 13/202 (6%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK+ G S +N LFVGNI ++ + ++ + G+ + + S + +RGF
Sbjct: 276 GKKIGVTVSYNNHRLFVGNIPKNRDRDDLFEEFTKH-APGLTEVIIYSSPDDKKKNRGFC 334
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL + V+G + V +A+P EPD + M+ V+ +++ +
Sbjct: 335 FLEYESHKAASLAKRRLSTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVRVLYVRNLT 391
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E ++++ + YG + R+ K KDY FI F + AV +N +N KE
Sbjct: 392 QDCSEEKLKESFEQYGKIERV--------KKIKDYAFIHFEDRDNAVKAMNELNGKEMGG 443
Query: 198 GNSKVKLRARLSNPMPKTQAVK 219
+ +V L S+ K + ++
Sbjct: 444 SHIEVSLAKPPSDKKKKEEMLR 465
>gi|302848854|ref|XP_002955958.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
gi|300258684|gb|EFJ42918.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
Length = 827
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 95/184 (51%), Gaps = 11/184 (5%)
Query: 14 LKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGL 73
+K+ G+R PS + L++G + T+E ++ LK V G+E I L+ D +
Sbjct: 168 VKEFPGRRVNVVPSIVKNKLYIGQMPRDITREELEVLLKAE-VVGLEKIELMMD-KETNQ 225
Query: 74 SRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEI-MAHVKTV 131
+RGF F+ F A A ++L +P+ + GH V+V +A+P R+ EI VK++
Sbjct: 226 ARGFGFIAFYNSAAATLALRKLSRPEFRLRGH---QVQVMWADPKRD---EIGTEKVKSI 279
Query: 132 FLDGVPPHWKENQIRDQIKGYGDVIRIVLA-RNMSTAKRKDYGFIDFSTHEAAVACINAI 190
++ +P + EN +R YG V R+ L K ++Y FI+++ +A+ ++
Sbjct: 280 YVGNLPEQYTENDLRAIFSQYGTVERVTLLYMPDDPTKLRNYTFINYTDRSSALRAVSEA 339
Query: 191 NNKE 194
NK+
Sbjct: 340 ENKK 343
>gi|224088555|ref|XP_002308472.1| predicted protein [Populus trichocarpa]
gi|222854448|gb|EEE91995.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 91/176 (51%), Gaps = 7/176 (3%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK+ + S+ N LF+GN+ W +E +K+ +K G GV ++ L+ D Q+ +RGFA
Sbjct: 136 GKKVKCSTSQANHRLFIGNVPRNWGEEDMKKAVKKTG-PGVNSVELLKDPQNPSRNRGFA 194
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
F+ + H A + K + P+ F + V++A+P + + VK V++ +P
Sbjct: 195 FIEYYNHACAEYSRKMMSSPE--FKLDDNAPTVSWADP-KNAGSSAASQVKAVYVKNLPE 251
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
++++R + +G V ++VL ++ +GF+ F+ +A + A+ N E
Sbjct: 252 DINQDRLRQLFEHHGKVTKVVLPPAKPGHEKSRFGFVHFAERSSA---MKALKNTE 304
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 123 EIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 179
E++A H V+L G+PP E +++ + G+V I + + +++ K Y F+ F T
Sbjct: 59 ELLALPPHGSEVYLGGIPPDASEEDLKEFCESIGEVTEIRIMKGKDSSESKGYAFVTFRT 118
Query: 180 HEAAVACINAINNKEFSDGNSKVKLRARLSN 210
E A I +NN EF KVK +N
Sbjct: 119 KELASKAIEELNNTEFK--GKKVKCSTSQAN 147
>gi|68369596|ref|XP_685178.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Danio rerio]
Length = 594
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 88/189 (46%), Gaps = 15/189 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K +GV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVLDVIVYPSAADKAKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + MA VK +++ +
Sbjct: 183 FVEYETHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMATVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E A+ +NA+N K
Sbjct: 240 LPTTEETIEKEFNSIKPGAVERV--------KKIRDYAFVHFSQREDAINAMNALNGKVI 291
Query: 196 SDGNSKVKL 204
+V L
Sbjct: 292 DGSPIEVTL 300
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 22/162 (13%)
Query: 25 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC 84
+P E +FVG + ++ + + +G + + ++ D G +RG+AFV FS
Sbjct: 50 SPPERGSEIFVGKLPRDLFEDELVPLCEKFG--KIYEVRMMMDFN--GNNRGYAFVTFST 105
Query: 85 HVDAMAAYKRLQKPDVVFGHPERTVKV-AFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
+A A K+L ++ G R + V A + R +F+ G+P K
Sbjct: 106 KQEAKNAMKQLNNYEIRNG---RLLGVCASVDNCR------------LFVGGIPKTKKRE 150
Query: 144 QIRDQIKGYGDVIR--IVLARNMSTAKRKDYGFIDFSTHEAA 183
+I ++K D + IV AK + + F+++ TH AA
Sbjct: 151 EILAEMKKVTDGVLDVIVYPSAADKAKNRGFAFVEYETHRAA 192
>gi|194899678|ref|XP_001979385.1| GG24121 [Drosophila erecta]
gi|190651088|gb|EDV48343.1| GG24121 [Drosophila erecta]
Length = 666
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 17/205 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + K+ I L+++G G+ + + S + +RG
Sbjct: 238 GKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRG 294
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 295 FCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRN 351
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E+++++Q + YG V R+ K KDY FI F ++AV + +N KE
Sbjct: 352 LTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEI 403
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKG 220
N +V L S+ K + ++
Sbjct: 404 GASNIEVSLAKPPSDKKKKEEILRA 428
>gi|189234965|ref|XP_973687.2| PREDICTED: similar to CG17838 CG17838-PB [Tribolium castaneum]
Length = 905
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 105/242 (43%), Gaps = 31/242 (12%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQ---KLKDYGVEGVENINLVSDIQHEGLSR 75
GK S N LFVGNI + KE I + KL Y G+ + + S + +R
Sbjct: 246 GKTLKINISVPNLRLFVGNIPKSKGKEEILEEFGKLTGY-TAGLVEVIIYSSPDDKKKNR 304
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 134
GF F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 305 GFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVR 361
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+ E ++++ + YG V R+ K KDY FI F E AV + ++ KE
Sbjct: 362 NLTQEISEEKLKEAFEAYGKVERV--------KKIKDYAFIHFEDRENAVKAMEELDGKE 413
Query: 195 FSDGNSKVK--------------LRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYG 240
N +V LRAR M Q V+GGM G G +R G
Sbjct: 414 MGGSNIEVSLAKPPSDKKKKEEILRARERRMMQMMQ-VRGGMMPGAMPLRGPPGQGARSG 472
Query: 241 RG 242
G
Sbjct: 473 AG 474
>gi|442620145|ref|NP_001262776.1| syncrip, isoform I [Drosophila melanogaster]
gi|440217677|gb|AGB96156.1| syncrip, isoform I [Drosophila melanogaster]
Length = 603
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 17/205 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + K+ I L+++G G+ + + S + +RG
Sbjct: 267 GKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRG 323
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 324 FCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRN 380
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E+++++Q + YG V R+ K KDY FI F ++AV + +N KE
Sbjct: 381 LTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEI 432
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKG 220
N +V L S+ K + ++
Sbjct: 433 GASNIEVSLAKPPSDKKKKEEILRA 457
>gi|344274538|ref|XP_003409072.1| PREDICTED: APOBEC1 complementation factor [Loxodonta africana]
Length = 595
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVKAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K ++
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYIR 311
>gi|161078453|ref|NP_001097849.1| syncrip, isoform H [Drosophila melanogaster]
gi|158030319|gb|ABW08711.1| syncrip, isoform H [Drosophila melanogaster]
Length = 534
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 17/205 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + K+ I L+++G G+ + + S + +RG
Sbjct: 238 GKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRG 294
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 295 FCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRN 351
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E+++++Q + YG V R+ K KDY FI F ++AV + +N KE
Sbjct: 352 LTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEI 403
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKG 220
N +V L S+ K + ++
Sbjct: 404 GASNIEVSLAKPPSDKKKKEEILRA 428
>gi|350592917|ref|XP_001925737.4| PREDICTED: APOBEC1 complementation factor isoform 1 [Sus scrofa]
Length = 662
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 125/303 (41%), Gaps = 49/303 (16%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ F+ E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFTNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF 255
DG+ + L+ P+ K ++ RY RG+G R
Sbjct: 292 -DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG------GRGTM 322
Query: 256 QRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGYNAPS-RAA 310
+G Y G + ++ +G + YT F +G R APS R A
Sbjct: 323 LQGEYTYSLGHVYDPTTAYLGAPVFYAPQAYTAIPSLHFPTTKGHLGNRAIIRAPSVRGA 382
Query: 311 AGA 313
AG
Sbjct: 383 AGV 385
>gi|195390987|ref|XP_002054147.1| GJ22950 [Drosophila virilis]
gi|194152233|gb|EDW67667.1| GJ22950 [Drosophila virilis]
Length = 789
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 17/205 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + K+ I L+++G G+ + + S + +RG
Sbjct: 236 GKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRG 292
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 293 FCFLEYDSHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRN 349
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E+++++Q + YG V R+ K KDY FI F ++AV + +N KE
Sbjct: 350 LTQDVTEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEV 401
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKG 220
N +V L S+ K + ++
Sbjct: 402 GASNIEVSLAKPPSDKKKKEEILRA 426
>gi|301757153|ref|XP_002914427.1| PREDICTED: APOBEC1 complementation factor-like [Ailuropoda
melanoleuca]
gi|281344706|gb|EFB20290.1| hypothetical protein PANDA_002310 [Ailuropoda melanoleuca]
Length = 592
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TEGVVDVIVYPSAADKSRNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRTAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E A+ + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAMEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|403272285|ref|XP_003928003.1| PREDICTED: probable RNA-binding protein 46 [Saimiri boliviensis
boliviensis]
Length = 533
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 100/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSAIDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K F
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGK-F 295
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 296 IDGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|24648528|ref|NP_732559.1| syncrip, isoform F [Drosophila melanogaster]
gi|23171812|gb|AAN13834.1| syncrip, isoform F [Drosophila melanogaster]
Length = 529
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 17/205 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + K+ I L+++G G+ + + S + +RG
Sbjct: 233 GKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRG 289
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 290 FCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRN 346
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E+++++Q + YG V R+ K KDY FI F ++AV + +N KE
Sbjct: 347 LTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEI 398
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKG 220
N +V L S+ K + ++
Sbjct: 399 GASNIEVSLAKPPSDKKKKEEILRA 423
>gi|324508419|gb|ADY43553.1| RNA-binding protein 47 [Ascaris suum]
Length = 558
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 98/187 (52%), Gaps = 11/187 (5%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+R G S DN LF+G I + I +++ + EG E + + I + +RGFA
Sbjct: 133 GRRIGVVRSVDNRRLFIGGIPREIKADQIIAEIRKH-TEGAEELVVYPSILDKSRNRGFA 191
Query: 79 FVMFSCHVDAMAAYKR-LQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A K+ LQ+P +++G +TV + +AEP ++ D +IM +VK +++ +
Sbjct: 192 FVEYRDHKSAAYARKKFLQEPLILWG---KTVCIDWAEPEQQVDSDIMENVKILYVRNLM 248
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
+ E +R + GD+ I + K +D+ F+ F+T E A+ +N +N+ +
Sbjct: 249 LNTDEITLRKYFE-MGDIHCIERVK-----KIRDFAFVHFTTREKALNALNKLNHTKLDG 302
Query: 198 GNSKVKL 204
+V L
Sbjct: 303 STIEVCL 309
>gi|348575664|ref|XP_003473608.1| PREDICTED: APOBEC1 complementation factor-like [Cavia porcellus]
Length = 594
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEIIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|431839024|gb|ELK00953.1| APOBEC1 complementation factor [Pteropus alecto]
Length = 543
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ F+ E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFNNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|24648520|ref|NP_732555.1| syncrip, isoform E [Drosophila melanogaster]
gi|23171808|gb|AAN13831.1| syncrip, isoform E [Drosophila melanogaster]
Length = 571
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 17/194 (8%)
Query: 30 NDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
N LFVGNI + K+ I L+++G G+ + + S + +RGF F+ + H
Sbjct: 286 NLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKA 342
Query: 88 AMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
A A +RL + V+G + V +A+P EPD + M+ VK +++ + E++++
Sbjct: 343 ASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLK 399
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206
+Q + YG V R+ K KDY FI F ++AV + +N KE N +V L
Sbjct: 400 EQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAK 451
Query: 207 RLSNPMPKTQAVKG 220
S+ K + ++
Sbjct: 452 PPSDKKKKEEILRA 465
>gi|195113079|ref|XP_002001097.1| GI10594 [Drosophila mojavensis]
gi|193917691|gb|EDW16558.1| GI10594 [Drosophila mojavensis]
Length = 721
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 17/194 (8%)
Query: 30 NDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
N LFVGNI + K+ I L+++G G+ + + S + +RGF F+ + H
Sbjct: 303 NLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYDSHKA 359
Query: 88 AMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
A A +RL + V+G + V +A+P EPD + M+ VK +++ + E++++
Sbjct: 360 ASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVTEDKLK 416
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206
+Q + YG V R+ K KDY FI F ++AV + +N KE N +V L
Sbjct: 417 EQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEVGASNIEVSLAK 468
Query: 207 RLSNPMPKTQAVKG 220
S+ K + ++
Sbjct: 469 PPSDKKKKEEILRA 482
>gi|307212325|gb|EFN88129.1| Heterogeneous nuclear ribonucleoprotein Q [Harpegnathos saltator]
Length = 649
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 17/204 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + KE I L ++G G+ + + S + +RG
Sbjct: 223 GKSLKVNISVPNLRLFVGNIPKSKGKEEI---LDEFGKLTAGLTEVIIYSSPDDKKKNRG 279
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ V+ +++
Sbjct: 280 FCFLEYESHKAASLAKRRLSTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVRVLYVRN 336
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E ++++ + YG + R+ K KDY FI F + AV +N +N KE
Sbjct: 337 LTQDCSEEKLKESFEQYGKIERV--------KKIKDYAFIHFEDRDNAVRAMNELNGKEM 388
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
+ +V L S+ K + ++
Sbjct: 389 GGSHIEVSLAKPPSDKKKKEEMLR 412
>gi|194744098|ref|XP_001954532.1| GF16693 [Drosophila ananassae]
gi|190627569|gb|EDV43093.1| GF16693 [Drosophila ananassae]
Length = 710
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 17/194 (8%)
Query: 30 NDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
N LFVGNI + K+ I L+++G G+ + + S + +RGF F+ + H
Sbjct: 247 NLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKA 303
Query: 88 AMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
A A +RL + V+G + V +A+P EPD + M+ VK +++ + E++++
Sbjct: 304 ASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLK 360
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206
+ + YG V R+ K KDY FI F ++AV + +N KE N +V L
Sbjct: 361 EHFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAK 412
Query: 207 RLSNPMPKTQAVKG 220
S+ K + ++
Sbjct: 413 PPSDKKKKEEILRA 426
>gi|442620163|ref|NP_001262784.1| syncrip, isoform R [Drosophila melanogaster]
gi|440217686|gb|AGB96164.1| syncrip, isoform R [Drosophila melanogaster]
Length = 569
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 17/205 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + K+ I L+++G G+ + + S + +RG
Sbjct: 233 GKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRG 289
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 290 FCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRN 346
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E+++++Q + YG V R+ K KDY FI F ++AV + +N KE
Sbjct: 347 LTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEI 398
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKG 220
N +V L S+ K + ++
Sbjct: 399 GASNIEVSLAKPPSDKKKKEEILRA 423
>gi|356542760|ref|XP_003539833.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Glycine
max]
Length = 509
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 91/179 (50%), Gaps = 7/179 (3%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
+ GK+ + S+ LF+GN+ +W E +K+ + + G GV + LV D+++ +R
Sbjct: 193 EFMGKKIKCSKSQAKHRLFIGNVPRSWGVEDLKKIVTEIG-PGVTGVELVKDMKNTNNNR 251
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
GFAF+ + H A + +++ P G E V++A+P + + + VK V++
Sbjct: 252 GFAFIDYYNHACAEYSRQKMMSPTFKLG--ENAPTVSWADP-KNAESSAASQVKAVYVKN 308
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+P + + Q++ + +G + ++VL S ++ GF+ F+ A + A+ N E
Sbjct: 309 LPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNA---MKALKNTE 364
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 186
H V++ G+P H + ++ + G+V + + + +++ K +GF+ F++ E A
Sbjct: 127 HGSEVYIGGIP-HASDEDLKSLCERIGEVAEVRIMKGKDSSENKGFGFVTFTSVELASKA 185
Query: 187 INAINNKEF 195
I +NN EF
Sbjct: 186 IEELNNTEF 194
>gi|326517573|dbj|BAK03705.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 372
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 11/206 (5%)
Query: 21 RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
RC S+ LFVGN+ ++E + +K G GV NI + D+ + +RGF FV
Sbjct: 84 RCSL--SQAKHRLFVGNVPKGLSEEELTSIIKGKG-PGVVNIEMFKDLHNPSRNRGFLFV 140
Query: 81 MFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP-----LREPDPEIMAHVKTVFLDG 135
+ H A A ++L PD + T V++AEP A VKT+++
Sbjct: 141 EYYNHACADYARQKLSSPDFKVDGSQLT--VSWAEPKGSSSSSSDSSSPAAQVKTIYVKN 198
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P + + +++D + +G+V +IVL + KR D+GF+ F+ +A+ + E
Sbjct: 199 LPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKGSEKYEI 257
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGG 221
+V + LS+ P GG
Sbjct: 258 DGQVLEVSMAKPLSDKKPDHSFKPGG 283
>gi|357511099|ref|XP_003625838.1| RNA-binding protein [Medicago truncatula]
gi|355500853|gb|AES82056.1| RNA-binding protein [Medicago truncatula]
Length = 477
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 103/208 (49%), Gaps = 10/208 (4%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G++ +PS+ LF+G++ WT E +K+ + G GV ++ L+ D Q +RGFA
Sbjct: 166 GRKIKCSPSQVKHRLFIGSVPKEWTVEDMKKVVAKVG-PGVISVELLKDPQSSSRNRGFA 224
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
F+ + H A A Y R + + F V++A+P R + + VK V++ +P
Sbjct: 225 FIEYHNH--ACAEYSRQKMSNSNFKLDNNDAIVSWADP-RNSESSSSSQVKAVYVKNLPE 281
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198
+ +N++++ + +G + ++ L + ++ YGF+ F+ +A + A+ N E +
Sbjct: 282 NITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSA---MKALKNTEKYEI 338
Query: 199 NSKVKLRARLSNPMPKTQAVKGGMSGGF 226
N + L L+ P ++ G S F
Sbjct: 339 NGQT-LECSLAKPQADQKS--SGASNSF 363
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 123 EIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 179
E++A H V++ G+P E +R + G+V + R M + K Y F+ F T
Sbjct: 92 ELLALPPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEV---RVMKGKEAKGYAFVTFKT 148
Query: 180 HEAAVACINAINNKEF 195
E A + +NN EF
Sbjct: 149 KELASKALKELNNSEF 164
>gi|426252733|ref|XP_004020057.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Ovis aries]
Length = 595
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYENHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ F+ E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFTNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|426252731|ref|XP_004020056.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Ovis aries]
Length = 587
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYENHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ F+ E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFTNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|414868617|tpg|DAA47174.1| TPA: hypothetical protein ZEAMMB73_366443 [Zea mays]
Length = 609
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 11/154 (7%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWT----KEAIKQKLKDYGVEGVENINLVSDIQHE 71
++ GKR S D DT+F GN+C WT +E I + KD + + + +
Sbjct: 83 EVQGKRLVVELSMDQDTVFFGNLCKEWTLEEFEELIHKAFKDVVSVDLAMASNLGSSNKK 142
Query: 72 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG---HPERTVKVAFAEPLREPDPEIMAHV 128
++RGF FV FS H A + + D + G HP + +A+ DP+ MA +
Sbjct: 143 NINRGFGFVRFSSHAAAARVIRIGSRTDFMLGDILHP----AINWADKESHLDPDEMAKM 198
Query: 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLAR 162
K+ F+ +P E +R +G+V+R+ ++R
Sbjct: 199 KSAFIGNLPEDVNEEYLRKLFGQFGEVVRVAISR 232
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 26/180 (14%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
+E +FVG + + T+ +++ G E I+ G S+G+ FV F+
Sbjct: 15 TEKGTEVFVGGLPRSATESTLREIFSSCG----EIIDARIMKDQSGHSKGYGFVRFAKRD 70
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
A A + QK + V+++ + TVF + W +
Sbjct: 71 YANTAKR--QKNGIEVQGKRLVVELSMDQ-------------DTVFFGNLCKEWTLEEFE 115
Query: 147 DQI-KGYGDVIRI--VLARNMSTAKRKD----YGFIDFSTHEAAVACINAINNKEFSDGN 199
+ I K + DV+ + +A N+ ++ +K+ +GF+ FS+H AA I + +F G+
Sbjct: 116 ELIHKAFKDVVSVDLAMASNLGSSNKKNINRGFGFVRFSSHAAAARVIRIGSRTDFMLGD 175
>gi|297490704|ref|XP_002698411.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Bos taurus]
gi|296472874|tpg|DAA14989.1| TPA: apobec-1 complementation factor-like isoform 2 [Bos taurus]
Length = 587
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYENHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ F+ E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFTNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|442620157|ref|NP_001262781.1| syncrip, isoform O [Drosophila melanogaster]
gi|440217683|gb|AGB96161.1| syncrip, isoform O [Drosophila melanogaster]
Length = 611
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 17/194 (8%)
Query: 30 NDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
N LFVGNI + K+ I L+++G G+ + + S + +RGF F+ + H
Sbjct: 286 NLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKA 342
Query: 88 AMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
A A +RL + V+G + V +A+P EPD + M+ VK +++ + E++++
Sbjct: 343 ASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLK 399
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206
+Q + YG V R+ K KDY FI F ++AV + +N KE N +V L
Sbjct: 400 EQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAK 451
Query: 207 RLSNPMPKTQAVKG 220
S+ K + ++
Sbjct: 452 PPSDKKKKEEILRA 465
>gi|126342214|ref|XP_001362315.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 583
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 23/213 (10%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I ++ I +++ EGV ++ + + + +RGFA
Sbjct: 138 GRPLGVCCSVDNCRLFIGGIPKMKKRDEILEEISKV-TEGVLDVIVYASATDKTKNRGFA 196
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A ++L + ++G + V +AEP + D ++M VK +++ +
Sbjct: 197 FIEYESHRAAAMARRKLMPGRIQLWGQ---QIAVDWAEPEMDVDEDVMETVKILYVRNLM 253
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E IR +G V R+ K +DY F+ F++ E A+ +N++N E +
Sbjct: 254 IKTSEETIRKTFSQFGCVERV--------KKIRDYAFVHFTSREDAIRAMNSLNGTEL-E 304
Query: 198 GNSKVKLRARLSNPMPKTQ------AVKGGMSG 224
G+ L L+ P+ K Q AVKG ++
Sbjct: 305 GSC---LGVTLAKPVDKEQYARYRKAVKGSVTA 334
>gi|351705983|gb|EHB08902.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 670
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 85/176 (48%), Gaps = 14/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +R F
Sbjct: 293 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNR-FC 350
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 351 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 407
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 408 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 455
>gi|359079976|ref|XP_003587913.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
gi|296472873|tpg|DAA14988.1| TPA: apobec-1 complementation factor-like isoform 1 [Bos taurus]
Length = 595
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYENHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ F+ E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFTNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|212274617|ref|NP_001130787.1| uncharacterized protein LOC100191891 [Zea mays]
gi|194690114|gb|ACF79141.1| unknown [Zea mays]
gi|414868618|tpg|DAA47175.1| TPA: hypothetical protein ZEAMMB73_366443 [Zea mays]
Length = 605
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 11/154 (7%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWT----KEAIKQKLKDYGVEGVENINLVSDIQHE 71
++ GKR S D DT+F GN+C WT +E I + KD + + + +
Sbjct: 83 EVQGKRLVVELSMDQDTVFFGNLCKEWTLEEFEELIHKAFKDVVSVDLAMASNLGSSNKK 142
Query: 72 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG---HPERTVKVAFAEPLREPDPEIMAHV 128
++RGF FV FS H A + + D + G HP + +A+ DP+ MA +
Sbjct: 143 NINRGFGFVRFSSHAAAARVIRIGSRTDFMLGDILHP----AINWADKESHLDPDEMAKM 198
Query: 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLAR 162
K+ F+ +P E +R +G+V+R+ ++R
Sbjct: 199 KSAFIGNLPEDVNEEYLRKLFGQFGEVVRVAISR 232
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 26/180 (14%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
+E +FVG + + T+ +++ G E I+ G S+G+ FV F+
Sbjct: 15 TEKGTEVFVGGLPRSATESTLREIFSSCG----EIIDARIMKDQSGHSKGYGFVRFAKRD 70
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
A A + QK + V+++ + TVF + W +
Sbjct: 71 YANTAKR--QKNGIEVQGKRLVVELSMDQ-------------DTVFFGNLCKEWTLEEFE 115
Query: 147 DQI-KGYGDVIRI--VLARNMSTAKRKD----YGFIDFSTHEAAVACINAINNKEFSDGN 199
+ I K + DV+ + +A N+ ++ +K+ +GF+ FS+H AA I + +F G+
Sbjct: 116 ELIHKAFKDVVSVDLAMASNLGSSNKKNINRGFGFVRFSSHAAAARVIRIGSRTDFMLGD 175
>gi|358342035|dbj|GAA49590.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 1032
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 98/201 (48%), Gaps = 14/201 (6%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LFVG I T+E I ++K EGV+++ + + +RGFA
Sbjct: 170 GKTIGVCFSVDNCRLFVGGIPKNKTREEIMAEMKRV-TEGVKDVISYPSVTDKSKNRGFA 228
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
FV + H A A ++L + + + + V +AEP RE + +IM+ VK +++ +
Sbjct: 229 FVEYESHKAAAMARRKLMPGKIQLWN--QQIAVDWAEPEREVNEDIMSKVKILYVRNLML 286
Query: 139 HWKENQIRDQ--IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E+ +R+ GD I + +S DY FI F E A C+ A+N+
Sbjct: 287 STTEDGLREHFVCAAGGDPNCIERVKKIS-----DYAFIHFKEREQAARCLEALNDT-LI 340
Query: 197 DGNSKVKLRARLSNPMPKTQA 217
DG+ K+ + P+ KT+A
Sbjct: 341 DGS---KIEVTWAKPVDKTEA 358
>gi|212275376|ref|NP_001130564.1| uncharacterized protein LOC100191663 [Zea mays]
gi|194689494|gb|ACF78831.1| unknown [Zea mays]
gi|219887513|gb|ACL54131.1| unknown [Zea mays]
gi|238010456|gb|ACR36263.1| unknown [Zea mays]
gi|413921450|gb|AFW61382.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921451|gb|AFW61383.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921452|gb|AFW61384.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921453|gb|AFW61385.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 467
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 5/200 (2%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
++ G+ + S+ LFVGN+ ++E + +K G GV NI + D +
Sbjct: 169 REFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKGKG-PGVINIEMFKDQHDPNRN 227
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE-IMAHVKTVFL 133
RGF FV + H A A ++L P+ + TV ++AEP D A VKT+++
Sbjct: 228 RGFLFVEYYNHACADYARQKLSSPNFKVDGSQLTV--SWAEPKGSTDASSAAAQVKTIYV 285
Query: 134 DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
+P + + +I+D +G+V +IVL + KR D+GF+ F+ +A+ +
Sbjct: 286 KNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKGSEKY 344
Query: 194 EFSDGNSKVKLRARLSNPMP 213
E +V + L++ P
Sbjct: 345 EIDGQVLEVSMAKPLADKKP 364
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 98 PDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR 157
PDV G PE + + + + P H VF+ G+P E +R+ + G++
Sbjct: 78 PDVAGGGPEDEEERSKWDDMLALPP----HGSEVFIGGLPRDITEEDLRELCEPLGEIYE 133
Query: 158 IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ L ++ T + K + F+ F EAA I + ++EF
Sbjct: 134 VRLTKDKDTKENKGFAFVTFMDKEAAQRAIEDVQDREF 171
>gi|356539254|ref|XP_003538114.1| PREDICTED: APOBEC1 complementation factor-like [Glycine max]
Length = 505
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 99/196 (50%), Gaps = 8/196 (4%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
+ GK+ + S+ LF+GN+ +W E +K+ + + G GV + LV D+++ +R
Sbjct: 189 EFMGKKIKCSKSQAKHRLFIGNVPRSWGVEDLKKIVTEIG-PGVTGVELVKDMKNTNNNR 247
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
GFAF+ + H A + +++ P G E V++A+P + + + VK V++
Sbjct: 248 GFAFIDYYNHACAEYSRQKMMSPTFKLG--ENAPTVSWADP-KNAESSAASQVKAVYVKN 304
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P + + Q++ + +G + ++VL S ++ GF+ F+ A + A+ N E
Sbjct: 305 LPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNA---MKALKNTER 361
Query: 196 SDGNSKVKLRARLSNP 211
+ ++ L+ L+ P
Sbjct: 362 YELEGQL-LQCSLAKP 376
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 124 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
I H V++ G+P H + ++ + G+V + + + +++ K +GF+ F + E A
Sbjct: 120 IPPHGSEVYIGGIP-HASDEDLKSLCERIGEVAEVRIMKGKDSSENKGFGFVTFRSVELA 178
Query: 184 VACINAINNKEF 195
I +NN EF
Sbjct: 179 SKAIEELNNTEF 190
>gi|198430507|ref|XP_002127144.1| PREDICTED: similar to RNA-binding protein 47 (RNA-binding motif
protein 47) [Ciona intestinalis]
Length = 711
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 15/189 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T K+ I ++ EGV ++ + + +RGFA
Sbjct: 180 GRMLGVCYSVDNCRLFVGGIPKTKKKDDIFAEMTKV-TEGVTDVIVYPSASDKTKNRGFA 238
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GHP + V +AEP ++ D EIM VK +++ +
Sbjct: 239 FVEYDSHRAAAMARRKLIPGRIQLWGHP---IAVDWAEPEQDVDDEIMGQVKVLYVRNLM 295
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E+ +++ + G V R+ K +DY F+ FST EA + + IN
Sbjct: 296 LDTTEDTLQNVFSQFKPGSVERV--------KKIRDYAFVHFSTREACIEAMEKINGTHI 347
Query: 196 SDGNSKVKL 204
+V L
Sbjct: 348 DQAEVEVTL 356
>gi|358419077|ref|XP_003584119.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
Length = 461
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYENHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ F+ E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFTNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|390177341|ref|XP_003736348.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859003|gb|EIM52421.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 483
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 106/236 (44%), Gaps = 32/236 (13%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + K+ I L+++G G+ + + S + +RG
Sbjct: 236 GKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRG 292
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 293 FCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRN 349
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E ++++Q + YG V R+ K KDY FI F ++AV + +N KE
Sbjct: 350 LTQDVTEEKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEI 401
Query: 196 SDGNSKVK--------------LRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFS 237
N +V LRAR M QA + G+ G H S + +
Sbjct: 402 GASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQA-RPGLVGNLSPTHPSMMSLT 456
>gi|291404365|ref|XP_002718412.1| PREDICTED: apobec-1 complementation factor [Oryctolagus cuniculus]
Length = 596
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSLVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNVKPGAVERV--------KKIRDYAFVHFSHREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|242011880|ref|XP_002426671.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
gi|212510842|gb|EEB13933.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
Length = 548
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 91/192 (47%), Gaps = 13/192 (6%)
Query: 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAM 89
N LFVGNI + KE I ++ G+ + + S + +RGF F+ + H A
Sbjct: 257 NLRLFVGNIPKSKGKEEIMEEFSKLAA-GLTKVIIYSSPDDKKKNRGFCFLEYESHKAAS 315
Query: 90 AAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQ 148
A +RL V V+G + V +A+P EPD E M+ VK +++ + E ++++
Sbjct: 316 LAKRRLGTGRVKVWGC---DIIVDWADPQEEPDAETMSKVKVLYVRNLTQDCSEEKLKES 372
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 208
+ YG + R+ K KDY FI F + A+ +N +N K+ + +V L
Sbjct: 373 FEVYGKIDRV--------KKIKDYAFIHFEDRDNAIKALNELNGKDLAGACIEVSLAKPP 424
Query: 209 SNPMPKTQAVKG 220
S+ K + ++
Sbjct: 425 SDKKKKEEVLRA 436
>gi|224138490|ref|XP_002322827.1| predicted protein [Populus trichocarpa]
gi|222867457|gb|EEF04588.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 91/179 (50%), Gaps = 9/179 (5%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK+ + S+ N LF+GN+ W +E +K+ +K G GV ++ L+ D Q+ +RGFA
Sbjct: 157 GKKVKCSTSQANHRLFIGNVPRNWGEENMKKAVKKIG-PGVNSVELLKDPQNPSRNRGFA 215
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR---EPDPEIMAHVKTVFLDG 135
F+ + H A + K++ P+ F + V++A+P ++ VK V++
Sbjct: 216 FIEYYNHACAEYSRKKMSNPE--FKLDDNAPTVSWADPKNAGSSAASQVCCSVKAVYVKN 273
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+P ++ +R + +G V ++VL ++ +GF+ F+ +A + A+ N E
Sbjct: 274 LPEDITQDGLRQLFEHHGKVTKVVLPPAKPGHEKSRFGFVHFAERSSA---MKALKNTE 329
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 123 EIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 179
E++A H V+L G+PP E +++ + G+V + + + +++ K Y F+ F T
Sbjct: 80 ELLALPPHGSEVYLGGIPPDASEGDLKEFCESIGEVTEVRIMKGKDSSESKGYAFVSFRT 139
Query: 180 HEAAVACINAINNKEFSDGNSKVKLRARLSN 210
E A I +NN EF KVK +N
Sbjct: 140 KELASKAIEELNNTEFK--GKKVKCSTSQAN 168
>gi|348582238|ref|XP_003476883.1| PREDICTED: probable RNA-binding protein 46 [Cavia porcellus]
Length = 540
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 15/208 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 135 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 193
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +F+ +
Sbjct: 194 FVKYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLFVRNLM 250
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ ++ K
Sbjct: 251 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMSGKCI 302
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMS 223
+ +V L ++ Q + G MS
Sbjct: 303 DGASIEVTLAKPVNKESTWRQHLNGQMS 330
>gi|440898350|gb|ELR49866.1| APOBEC1 complementation factor [Bos grunniens mutus]
Length = 595
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYENHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ F+ E AV + A+N K
Sbjct: 240 LSTSEEVIEKEFNNIKPGAVERV--------KKIRDYAFVHFTNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|432093052|gb|ELK25342.1| Putative RNA-binding protein 46 [Myotis davidii]
Length = 533
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E+ I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTAEDTIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|297293557|ref|XP_001092238.2| PREDICTED: probable RNA-binding protein 46 [Macaca mulatta]
Length = 709
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 305 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 363
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 364 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 420
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 421 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 472
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 473 -DGAS---IEVTLAKPVNKENTWRQHLNG 497
>gi|72086008|ref|XP_793277.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Strongylocentrotus purpuratus]
Length = 638
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 14/198 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
L+VG+I TK+ I ++ +G+ ++ ++ + + +RGFAF+ F H A +A
Sbjct: 254 LYVGSIPKNKTKDEILEEFAKVE-KGLLDV-IIYKTEDKMRNRGFAFLEFDSHKAAASAK 311
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
++L + + + V V +A+P+ EPD + M+ VK V++ + E +I++ Y
Sbjct: 312 RKLASGRIKVWN-QINVNVDWADPVIEPDSDTMSKVKVVYIRNLSTETTEVKIKEDFGQY 370
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL-RARLSNP 211
G+V + K KDY F+ F +AAV I +N KE+ +V L + + N
Sbjct: 371 GEVEK--------AKKMKDYCFVHFKERDAAVKAIEEMNGKEYEGTTIEVSLAKPPMENK 422
Query: 212 MPKTQAVK--GGMSGGFR 227
K + ++ GG S GF
Sbjct: 423 KKKERIMRQQGGGSFGFE 440
>gi|297740122|emb|CBI30304.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 93/179 (51%), Gaps = 7/179 (3%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
+I G++ + S+ LF+ N+ TW +E +K+ + + G GV ++L D Q+ +R
Sbjct: 157 EIKGRKIKCSASQVKHRLFISNVPRTWEEEDMKKVVTEIG-PGVNLVDLWKDPQNSSRNR 215
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
GFAF+ + H A + K++ P + TV ++A+P + + + VK V++
Sbjct: 216 GFAFIEYYNHACAEYSRKKMSNPKFKLDNNASTV--SWADP-KNVESSAASQVKAVYIKN 272
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+P + ++Q+R+ +G + ++V+ + + +GF+ F+ +A + A+ N E
Sbjct: 273 LPKYMTQDQLRELFGQHGKITKVVIPPAKAGQENCRFGFVHFAERSSA---MKALKNTE 328
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 123 EIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 179
E++A H V+L G+P + E +R + G+V + + + +A+ K Y F+ F T
Sbjct: 83 ELLALPPHGSEVYLGGIPNNASEEDLRGFCEPVGEVTEVRILKGKDSAETKGYAFVTFRT 142
Query: 180 HEAAVACINAINNKEFSD-----GNSKVKLRARLSNPMPKT 215
E A + +NN E S+VK R +SN +P+T
Sbjct: 143 KELASKAMEELNNAEIKGRKIKCSASQVKHRLFISN-VPRT 182
>gi|338716785|ref|XP_001501741.3| PREDICTED: APOBEC1 complementation factor isoform 1 [Equus
caballus]
Length = 597
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A++ K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALHGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|443733097|gb|ELU17586.1| hypothetical protein CAPTEDRAFT_178834 [Capitella teleta]
Length = 545
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 16/178 (8%)
Query: 20 KRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI---NLVSDIQHEGLSRG 76
+R S N LFVGNI + T+E I ++ E + ++ N+ D + + +RG
Sbjct: 243 RRLKVNVSVANVRLFVGNIPKSKTREEIIEEFSKL-TESLTDVIVYNVADDAKKK--NRG 299
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FAF+ + H A A ++L + + + V +A+P EPD E M+ VK +++ +
Sbjct: 300 FAFLEYDSHKSASVAKRKLGNGRQRVWNCD--IIVDWADPQEEPDEETMSKVKVLYVRNL 357
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
E+QIR++ + +G V R+ K KDYGF+ F E A+A + +N K+
Sbjct: 358 KQDVTEDQIREKFEVFGKVERV--------KKIKDYGFVHFEEREHALAAMKDLNGKQ 407
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 62/124 (50%), Gaps = 17/124 (13%)
Query: 72 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 131
GL+RG+AFV F+ A A K+L ++ P R +KV + +A+V+ +
Sbjct: 211 GLNRGYAFVTFTTRDAAQEAVKQLDNYEI---KPTRRLKVNVS----------VANVR-L 256
Query: 132 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS-TAKRKDYG--FIDFSTHEAAVACIN 188
F+ +P +I ++ + + V+ N++ AK+K+ G F+++ +H++A
Sbjct: 257 FVGNIPKSKTREEIIEEFSKLTESLTDVIVYNVADDAKKKNRGFAFLEYDSHKSASVAKR 316
Query: 189 AINN 192
+ N
Sbjct: 317 KLGN 320
>gi|338716787|ref|XP_003363516.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Equus
caballus]
Length = 589
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A++ K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALHGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|354474595|ref|XP_003499516.1| PREDICTED: probable RNA-binding protein 46 [Cricetulus griseus]
Length = 533
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|255647325|gb|ACU24129.1| unknown [Glycine max]
Length = 78
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 371 VKRSFHVMDHEPDYMGPRRFRPRLDYNDPVIPFHGSHHHDNVGACSNHYSDDYHVPNYGA 430
+KR F++ D EPDYMGP R RPRLDY DP I F G+HHHD+ GA S Y DY+ +YG
Sbjct: 1 MKRPFYMTDPEPDYMGPTRLRPRLDYADPPI-FPGTHHHDSFGAGSRQYPPDYYGSDYGR 59
Query: 431 HPPYPPYYGDDRLYGGGYFY 450
Y YYG D +G GY+Y
Sbjct: 60 G-SYSSYYGGDGSHGHGYYY 78
>gi|395820739|ref|XP_003783718.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Otolemur
garnettii]
Length = 584
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I +++ EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMRKV-TEGVVDVIVYPSAADKSKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS + A+ + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNRDDAIEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|395834586|ref|XP_003790279.1| PREDICTED: probable RNA-binding protein 46 [Otolemur garnettii]
Length = 533
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|260812205|ref|XP_002600811.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
gi|229286101|gb|EEN56823.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
Length = 531
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 16/190 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G PS DN LFVG I K I +++ EGV ++ + + +RGFA
Sbjct: 127 GRLLGVCPSVDNCRLFVGGIPKNKKKHEILEEMSKV-TEGVVDVIVYPSATDKTKNRGFA 185
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP E D +IM VK +++ +
Sbjct: 186 FVEYESHRAAAMARRKLIPGRIQLWGH---QIAVDWAEPEVEVDEDIMKSVKVLYVRNLL 242
Query: 138 PHWKENQIRDQIKGY---GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
E +++ + G V R+ K +DY F+ F T E AV +NA N +
Sbjct: 243 LTTTEESLKESFENVVSPGSVERV--------KKIRDYAFVHFKTREEAVKAMNATNGQL 294
Query: 195 FSDGNSKVKL 204
+V L
Sbjct: 295 IDGCQVEVTL 304
>gi|355687676|gb|EHH26260.1| hypothetical protein EGK_16179 [Macaca mulatta]
gi|355749630|gb|EHH54029.1| hypothetical protein EGM_14765 [Macaca fascicularis]
Length = 533
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|301787307|ref|XP_002929069.1| PREDICTED: probable RNA-binding protein 46-like [Ailuropoda
melanoleuca]
gi|281342850|gb|EFB18434.1| hypothetical protein PANDA_019160 [Ailuropoda melanoleuca]
Length = 533
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|410956690|ref|XP_003984972.1| PREDICTED: probable RNA-binding protein 46 [Felis catus]
Length = 533
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKESTWRQHLNG 321
>gi|126331293|ref|XP_001366441.1| PREDICTED: probable RNA-binding protein 46-like [Monodelphis
domestica]
gi|395542497|ref|XP_003773166.1| PREDICTED: probable RNA-binding protein 46 [Sarcophilus harrisii]
Length = 533
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKESTWRQHLNG 321
>gi|297674548|ref|XP_002815285.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pongo abelii]
Length = 533
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|332820527|ref|XP_003310593.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Pan
troglodytes]
Length = 533
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|20357572|ref|NP_055391.2| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|311771764|ref|NP_001185747.1| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|8574043|emb|CAB94755.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574519|gb|EAW54134.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|119574521|gb|EAW54136.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|158257396|dbj|BAF84671.1| unnamed protein product [Homo sapiens]
Length = 586
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 125/303 (41%), Gaps = 49/303 (16%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GH + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF 255
DG+ + L+ P+ K ++ RY RG+G R
Sbjct: 292 -DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG------GRGTM 322
Query: 256 QRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGYNAPS-RAA 310
+G Y G+ + ++ +G + Y F +G S R APS R A
Sbjct: 323 LQGEYTYSLGQVYDPTTTYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAIIRAPSVRGA 382
Query: 311 AGA 313
AG
Sbjct: 383 AGV 385
>gi|339234953|ref|XP_003379031.1| RNA-binding protein 47 [Trichinella spiralis]
gi|316978381|gb|EFV61375.1| RNA-binding protein 47 [Trichinella spiralis]
Length = 567
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 14/189 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN L+V I ++E ++ ++ +GV ++ L + +RGFA
Sbjct: 152 GRFIGVLKSVDNCRLYVSGIPRDKSREDVRSEIARL-TDGVVDVILYPSAMDKSKNRGFA 210
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
F+ + H A A ++L + E TV +AEP R+ D E MA VK +++ +
Sbjct: 211 FIEYESHRSAAMARRKLAPNRLTLWGNEITVD--WAEPERDVDEETMAQVKKLYVRNLMM 268
Query: 139 HWKENQIRD---QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
H E +R+ I G G V R+ K +DY F+ FS E A+ A+N ++
Sbjct: 269 HTTEEHLREVVEAISGTGTVERV--------KKIRDYAFVHFSRREDAIRVQEALNGQDL 320
Query: 196 SDGNSKVKL 204
+VKL
Sbjct: 321 DGSVVEVKL 329
>gi|345481380|ref|XP_001602182.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Nasonia vitripennis]
Length = 661
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 17/205 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + KE I L ++G G+ + + S + +RG
Sbjct: 233 GKSLKVNISVPNLRLFVGNIPKSKGKEEI---LDEFGKLTAGLTEVIIYSSPDDKKKNRG 289
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ V+ +++
Sbjct: 290 FCFLEYESHKAASLAKRRLGTGRMKVWGC---DIIVDWADPQEEPDEQTMSKVRVLYVRN 346
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E ++++ + YG + R+ K KDY FI F E AV + +N KE
Sbjct: 347 LTQDCSEEKLKECFEQYGKIERV--------KKIKDYAFIHFEERECAVKAMRELNGKEM 398
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKG 220
+ +V L S+ K + ++
Sbjct: 399 GGSHIEVSLAKPPSDKKKKEEMLRA 423
>gi|208973286|ref|NP_001129189.1| probable RNA-binding protein 46 [Rattus norvegicus]
Length = 533
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|300794578|ref|NP_001179648.1| probable RNA-binding protein 46 [Bos taurus]
gi|296478817|tpg|DAA20932.1| TPA: RNA binding motif protein 46 [Bos taurus]
gi|440907847|gb|ELR57939.1| Putative RNA-binding protein 46 [Bos grunniens mutus]
Length = 533
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGSVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|426246909|ref|XP_004017229.1| PREDICTED: probable RNA-binding protein 46 [Ovis aries]
Length = 533
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKRKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGTVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|311262420|ref|XP_003129173.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Sus scrofa]
Length = 533
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|395820737|ref|XP_003783717.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Otolemur
garnettii]
Length = 592
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I +++ EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMRKV-TEGVVDVIVYPSAADKSKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS + A+ + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNRDDAIEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|426345799|ref|XP_004040586.1| PREDICTED: probable RNA-binding protein 46 [Gorilla gorilla
gorilla]
Length = 514
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 110 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 168
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 169 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 225
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 226 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 277
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 278 -DGAS---IEVTLAKPVNKENTWRQHLNG 302
>gi|57096861|ref|XP_532699.1| PREDICTED: probable RNA-binding protein 46 [Canis lupus familiaris]
Length = 533
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|20357578|ref|NP_620311.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|311771768|ref|NP_001185749.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|119574520|gb|EAW54135.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|119574522|gb|EAW54137.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|219521544|gb|AAI44197.1| A1CF protein [Homo sapiens]
Length = 594
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 125/303 (41%), Gaps = 49/303 (16%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 132 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 190
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GH + V +AEP E D + M+ VK +++ +
Sbjct: 191 FVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVKILYVRNLM 247
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 248 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 299
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF 255
DG+ + L+ P+ K ++ RY RG+G R
Sbjct: 300 -DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG------GRGTM 330
Query: 256 QRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGYNAPS-RAA 310
+G Y G+ + ++ +G + Y F +G S R APS R A
Sbjct: 331 LQGEYTYSLGQVYDPTTTYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAIIRAPSVRGA 390
Query: 311 AGA 313
AG
Sbjct: 391 AGV 393
>gi|332217537|ref|XP_003257915.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Nomascus
leucogenys]
Length = 533
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKLGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|21450675|ref|NP_659416.1| probable RNA-binding protein 46 [Homo sapiens]
gi|74760436|sp|Q8TBY0.1|RBM46_HUMAN RecName: Full=Probable RNA-binding protein 46; AltName:
Full=Cancer/testis antigen 68; Short=CT68; AltName:
Full=RNA-binding motif protein 46
gi|20306894|gb|AAH28588.1| RNA binding motif protein 46 [Homo sapiens]
gi|119625307|gb|EAX04902.1| hypothetical protein MGC27016, isoform CRA_a [Homo sapiens]
gi|325463385|gb|ADZ15463.1| RNA binding motif protein 46 [synthetic construct]
Length = 533
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|344291747|ref|XP_003417592.1| PREDICTED: probable RNA-binding protein 46 [Loxodonta africana]
Length = 533
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSIMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|332834232|ref|XP_001162562.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Pan
troglodytes]
Length = 502
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 125/303 (41%), Gaps = 49/303 (16%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 40 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 98
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GH + V +AEP E D + M+ VK +++ +
Sbjct: 99 FVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVKILYVRNLM 155
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 156 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 207
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF 255
DG+ + L+ P+ K ++ RY RG+G R
Sbjct: 208 -DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG------GRGTM 238
Query: 256 QRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGYNAPS-RAA 310
+G Y G+ + ++ +G + Y F +G S R APS R A
Sbjct: 239 LQGEYTYSLGQVYDPTTTYLGAPVFYAPQTYAAIPNLHFPATKGHLSNRAIIRAPSVRGA 298
Query: 311 AGA 313
AG
Sbjct: 299 AGV 301
>gi|255069811|gb|ACU00255.1| AT04629p [Drosophila melanogaster]
Length = 489
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 17/178 (9%)
Query: 30 NDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
N LFVGNI + K+ I L+++G G+ + + S + +RGF F+ + H
Sbjct: 314 NLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKA 370
Query: 88 AMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
A A +RL + V+G + V +A+P EPD + M+ VK +++ + E++++
Sbjct: 371 ASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLK 427
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204
+Q + YG V R+ K KDY FI F ++AV + +N KE N +V L
Sbjct: 428 EQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSL 477
>gi|397469477|ref|XP_003806378.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Pan paniscus]
Length = 594
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 125/303 (41%), Gaps = 49/303 (16%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 132 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 190
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GH + V +AEP E D + M+ VK +++ +
Sbjct: 191 FVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVKILYVRNLM 247
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 248 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 299
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF 255
DG+ + L+ P+ K ++ RY RG+G R
Sbjct: 300 -DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG------GRGTM 330
Query: 256 QRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGYNAPS-RAA 310
+G Y G+ + ++ +G + Y F +G S R APS R A
Sbjct: 331 LQGEYTYSLGQVYDPTTTYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAIIRAPSVRGA 390
Query: 311 AGA 313
AG
Sbjct: 391 AGV 393
>gi|225440864|ref|XP_002276509.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
Length = 490
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 93/179 (51%), Gaps = 7/179 (3%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
+I G++ + S+ LF+ N+ TW +E +K+ + + G GV ++L D Q+ +R
Sbjct: 186 EIKGRKIKCSASQVKHRLFISNVPRTWEEEDMKKVVTEIG-PGVNLVDLWKDPQNSSRNR 244
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
GFAF+ + H A + K++ P + TV ++A+P + + + VK V++
Sbjct: 245 GFAFIEYYNHACAEYSRKKMSNPKFKLDNNASTV--SWADP-KNVESSAASQVKAVYIKN 301
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+P + ++Q+R+ +G + ++V+ + + +GF+ F+ +A + A+ N E
Sbjct: 302 LPKYMTQDQLRELFGQHGKITKVVIPPAKAGQENCRFGFVHFAERSSA---MKALKNTE 357
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 27/174 (15%)
Query: 123 EIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 179
E++A H V+L G+P + E +R + G+V + + + +A+ K Y F+ F T
Sbjct: 112 ELLALPPHGSEVYLGGIPNNASEEDLRGFCEPVGEVTEVRILKGKDSAETKGYAFVTFRT 171
Query: 180 HEAAVACINAINNKEFSD-----GNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 234
E A + +NN E S+VK R +SN +P+T +
Sbjct: 172 KELASKAMEELNNAEIKGRKIKCSASQVKHRLFISN-VPRTWE-----------EEDMKK 219
Query: 235 TFSRYGRGSGRAGHHFNRANFQRGRGF-----YQHGRNHSSR--MGPTEYDFDN 281
+ G G + N R RGF Y H SR M ++ DN
Sbjct: 220 VVTEIGPGVNLVDLWKDPQNSSRNRGFAFIEYYNHACAEYSRKKMSNPKFKLDN 273
>gi|351713895|gb|EHB16814.1| Putative RNA-binding protein 46 [Heterocephalus glaber]
Length = 528
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 98/208 (47%), Gaps = 15/208 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCHVD-AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H + AMA K + ++GH T++V +A+P +E D E M VK +F+ +
Sbjct: 188 FVKYESHREPAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLFVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ ++ K
Sbjct: 245 ISTTEETIKGEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMSGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMS 223
+ +V L ++ Q + G +S
Sbjct: 297 DGASIEVTLAKPVNKESTGRQHLNGQIS 324
>gi|301606991|ref|XP_002933097.1| PREDICTED: probable RNA-binding protein 46-like [Xenopus (Silurana)
tropicalis]
Length = 533
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 96/201 (47%), Gaps = 17/201 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G+I KE I +++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCASLDNCRLFIGSIPQEKRKEDILEEMKKV-TEGVMDVIVCPSATDKTKNRGFA 187
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
FV + H A A ++L F RT+KV +A+P +E D E M VK +++ +
Sbjct: 188 FVTYESHRAAAMARRKLIPG--TFQLWGRTIKVDWADPEKEVDEETMQKVKVLYVRNLMM 245
Query: 139 HWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E I+ + Y G V R+ K +DY F+ F + A+A ++ +N +
Sbjct: 246 STTEETIKAEFNRYKPGVVERV--------KKIRDYAFVHFFRRDYAIAAMSEMNGR-LI 296
Query: 197 DGNSKVKLRARLSNPMPKTQA 217
DG ++ L+ P+ K A
Sbjct: 297 DG---ARIEVTLAKPVNKEAA 314
>gi|47213373|emb|CAF90992.1| unnamed protein product [Tetraodon nigroviridis]
Length = 611
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 17/202 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I +++ EGV ++ + + +RGFA
Sbjct: 125 GRLLGVCASVDNCRLFVGGIPKTKKREEIMCEMRKV-TEGVVDVIVYPSAADKSKNRGFA 183
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GH + V +AEP E D + MA VK +++ +
Sbjct: 184 FVEYESHRAAAMARRKLLPGRIQLWGH---AIAVDWAEPEVEVDEDTMATVKILYVRNLM 240
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I + +V R+ K +DY F+ F+ E A+ + +N K D
Sbjct: 241 LQTTEETIEKEFNSLKEVERV--------KKIRDYAFVHFAQREDAIHAMKELNGK-VVD 291
Query: 198 GNSKVKLRARLSNPMPKTQAVK 219
G+ + L+ P+ K V+
Sbjct: 292 GSP---IEVTLAKPVDKDSYVR 310
>gi|449504773|ref|XP_002187149.2| PREDICTED: APOBEC1 complementation factor [Taeniopygia guttata]
Length = 581
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K +GV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ F+ E AV + A+N K
Sbjct: 240 LSTTEETIEKEFNSIKPGAVERV--------KKIRDYAFVHFNKREHAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|335293716|ref|XP_003357034.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Sus scrofa]
Length = 485
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|327274033|ref|XP_003221783.1| PREDICTED: probable RNA-binding protein 46-like [Anolis
carolinensis]
Length = 514
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 15/208 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F + AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNRDDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMS 223
+ +V L ++ Q + G MS
Sbjct: 297 DGASIEVTLAKPVNKESTWRQHLNGQMS 324
>gi|397469479|ref|XP_003806379.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Pan paniscus]
Length = 594
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 94/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GH + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|326497929|dbj|BAJ94827.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 469
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 94/198 (47%), Gaps = 11/198 (5%)
Query: 21 RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
RC S+ LFVGN+ ++E + +K G GV NI + D+ + +RGF FV
Sbjct: 181 RCSL--SQAKHRLFVGNVPKGLSEEELTSIIKGKG-PGVVNIEMFKDLHNPSRNRGFLFV 237
Query: 81 MFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP-----LREPDPEIMAHVKTVFLDG 135
+ H A A ++L PD + T V++AEP A VKT+++
Sbjct: 238 EYYNHACADYARQKLSSPDFKVDGSQLT--VSWAEPKGSSSSSSDSSSPAAQVKTIYVKN 295
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P + + +++D + +G+V +IVL + KR D+GF+ F+ +A+ + E
Sbjct: 296 LPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKGSEKYEI 354
Query: 196 SDGNSKVKLRARLSNPMP 213
+V + LS+ P
Sbjct: 355 DGQVLEVSMAKPLSDKKP 372
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 79/174 (45%), Gaps = 20/174 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+F+G + T+E ++Q + G + + L+ D + + ++GFAFV F+ A A
Sbjct: 111 VFLGGLPRDTTEEDLRQLCEPLG--EIFEVRLMKDKETKE-NKGFAFVTFTAKDVAQHAI 167
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+ L D H RT++ + ++ +F+ VP E ++ IKG
Sbjct: 168 EELHDKD----HKGRTLRCSLSQAKH-----------RLFVGNVPKGLSEEELTSIIKGK 212
Query: 153 GD-VIRIVLARNMSTAKR-KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204
G V+ I + +++ R + + F+++ H A +++ +F S++ +
Sbjct: 213 GPGVVNIEMFKDLHNPSRNRGFLFVEYYNHACADYARQKLSSPDFKVDGSQLTV 266
>gi|20357575|ref|NP_620310.1| APOBEC1 complementation factor isoform 2 [Homo sapiens]
gi|74761651|sp|Q9NQ94.1|A1CF_HUMAN RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|8574041|emb|CAB94754.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574518|gb|EAW54133.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|119574523|gb|EAW54138.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|120659916|gb|AAI30520.1| APOBEC1 complementation factor [Homo sapiens]
Length = 594
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 94/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GH + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|357617562|gb|EHJ70861.1| hypothetical protein KGM_04943 [Danaus plexippus]
Length = 668
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 17/205 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + KE I L+++G G+ + + S + +RG
Sbjct: 286 GKTLRIKISVPNLRLFVGNIPKSKGKEEI---LEEFGKLTAGLVEVIIYSSPDDKKKNRG 342
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 343 FCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRN 399
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E ++++ + YG+V R+ K KDY F+ F + AV + I+ KE
Sbjct: 400 LTQEITEEALKEEFERYGNVERV--------KKIKDYAFVHFEDRDCAVKAMQEIDGKEL 451
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKG 220
+V L S+ K + ++
Sbjct: 452 GGARLEVSLAKPPSDKKKKEEILRA 476
>gi|390358938|ref|XP_781163.2| PREDICTED: APOBEC1 complementation factor-like isoform 3
[Strongylocentrotus purpuratus]
Length = 567
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G PS DN LFVG I +E I ++ E V ++ + I + +RGFA
Sbjct: 126 GRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKV-TEQVVDVIVYPSINDKAKNRGFA 184
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP ++ D ++M VK +++ +
Sbjct: 185 FVEYENHRAAAMARRKLIPGRIQLWGH---QIMVDWAEPEQDVDEDVMRGVKILYVRNLM 241
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
H E I + + G V R+ K +D+ FI F T E A+ +NA+++
Sbjct: 242 LHTTEETIAKEFNAFKEGSVERV--------KKLRDFAFIHFFTREDALNAMNAMDDP-L 292
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG K+ L+ P+ K V+
Sbjct: 293 LDG---AKIEVVLAKPVDKGNYVR 313
>gi|67972374|dbj|BAE02529.1| unnamed protein product [Macaca fascicularis]
Length = 414
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 58 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 116
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 117 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 173
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 174 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 225
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 226 -DGAS---IEVTLAKPVNKENTWRQHLNG 250
>gi|242004750|ref|XP_002423241.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506227|gb|EEB10503.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 487
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 10/196 (5%)
Query: 12 FPLKQICGKR-CGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 70
F + +I KR S DN LF+ + N T E I+ L V+ V+ + + +++
Sbjct: 87 FDMFEIRNKRTIKIERSVDNTRLFLSCVPNDKTSEEIQCDLLTV-VDNVKKVYVYPTLEN 145
Query: 71 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 130
+ RG+AFV F H DA A KR+ PDV F E+ A+A PL + I+ +
Sbjct: 146 PSIFRGYAFVEFKSHRDAAIA-KRILTPDVCFNLFEKKCIAAWANPLPFLNESILKTINI 204
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR-KDYGFIDFSTHEAAVACINA 189
+F+ VP K N I+ I+ I+ ++ KR ++ F+ F HE A +N
Sbjct: 205 LFIRNVPKEIKSNTIKKIIEN------ILEDNSLQKVKRLNNFAFLTFRNHEKAKFALNY 258
Query: 190 INNKEFSDGNSKVKLR 205
I + G+ K+++
Sbjct: 259 IKDHPSLLGSEKIQIE 274
>gi|119625308|gb|EAX04903.1| hypothetical protein MGC27016, isoform CRA_b [Homo sapiens]
gi|193785107|dbj|BAG54260.1| unnamed protein product [Homo sapiens]
Length = 470
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|158706381|sp|Q4R2Z0.2|RBM46_MACFA RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 485
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|194380344|dbj|BAG63939.1| unnamed protein product [Homo sapiens]
Length = 485
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|149048270|gb|EDM00846.1| similar to hypothetical protein MGC27016 (predicted) [Rattus
norvegicus]
Length = 468
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|449280244|gb|EMC87583.1| APOBEC1 complementation factor [Columba livia]
Length = 589
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K +GV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ F+ E AV + A+N K
Sbjct: 240 LSTTEETIEKEFNNIKPGAVERV--------KKIRDYAFVHFNKREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|114596513|ref|XP_528865.2| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pan
troglodytes]
gi|397504054|ref|XP_003822624.1| PREDICTED: probable RNA-binding protein 46 [Pan paniscus]
gi|402870690|ref|XP_003899339.1| PREDICTED: probable RNA-binding protein 46 [Papio anubis]
Length = 470
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|327279356|ref|XP_003224422.1| PREDICTED: APOBEC1 complementation factor-like [Anolis
carolinensis]
Length = 589
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K +GV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILAEIKKV-TDGVVDVIVYPSAADKAKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYGSHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSAVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ F+ E AV + +N K
Sbjct: 240 LSTTEETIEKEFSSIKPGSVERV--------KKIRDYAFVHFNNREDAVEAMKVLNGK-M 290
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ ++ L+ P+ K V+
Sbjct: 291 VDGSP---IKVTLAKPVDKDSYVR 311
>gi|332217539|ref|XP_003257916.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Nomascus
leucogenys]
Length = 470
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKLGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|390358934|ref|XP_003729368.1| PREDICTED: APOBEC1 complementation factor-like isoform 1
[Strongylocentrotus purpuratus]
Length = 548
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G PS DN LFVG I +E I ++ E V ++ + I + +RGFA
Sbjct: 126 GRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKV-TEQVVDVIVYPSINDKAKNRGFA 184
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP ++ D ++M VK +++ +
Sbjct: 185 FVEYENHRAAAMARRKLIPGRIQLWGH---QIMVDWAEPEQDVDEDVMRGVKILYVRNLM 241
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
H E I + + G V R+ K +D+ FI F T E A+ +NA+++
Sbjct: 242 LHTTEETIAKEFNAFKEGSVERV--------KKLRDFAFIHFFTREDALNAMNAMDDP-L 292
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG K+ L+ P+ K V+
Sbjct: 293 LDG---AKIEVVLAKPVDKGNYVR 313
>gi|226423939|ref|NP_001139800.1| probable RNA-binding protein 46 [Mus musculus]
gi|215275534|sp|P86049.1|RBM46_MOUSE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 533
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFSKFKPGAVERV--------KKLRDYAFVHFFHREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|224153375|ref|XP_002337347.1| predicted protein [Populus trichocarpa]
gi|222838882|gb|EEE77233.1| predicted protein [Populus trichocarpa]
Length = 199
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Query: 17 ICGKRCGTAPSED-NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
I GKRC TA +D + TL+V NIC WTK+ ++ KL +YGV+ E + L +++ +R
Sbjct: 85 INGKRCWTAQIQDGSKTLYVPNICKEWTKDDLEDKLAEYGVKNYEILTLNPARENKEKNR 144
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV 128
G+A + F DA A + L+K +V FG R K F+ + EIM+HV
Sbjct: 145 GYAHLDFRSGKDASEALELLKKENVSFGQ-NRAAKADFSRKYASGNDEIMSHV 196
>gi|194383568|dbj|BAG64755.1| unnamed protein product [Homo sapiens]
Length = 587
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 94/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 117 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 175
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GH + V +AEP E D + M+ VK +++ +
Sbjct: 176 FVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVKILYVRNLM 232
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 233 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 284
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 285 -DGSP---IEVTLAKPVDKDSYVR 304
>gi|431901230|gb|ELK08296.1| Putative RNA-binding protein 46 [Pteropus alecto]
Length = 699
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 355 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 413
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 414 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 470
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 471 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 522
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 523 -DGAS---IEVTLAKPVNKENTWRQHLNG 547
>gi|363735088|ref|XP_421561.3| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Gallus
gallus]
Length = 589
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 15/202 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K +GV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I K + ++ + + R K +DY F+ F+ E AV + A+N K D
Sbjct: 240 LSTTEETIE---KEFNNIKQGAVER---VKKIRDYAFVHFNKREDAVHAMKALNGKVL-D 292
Query: 198 GNSKVKLRARLSNPMPKTQAVK 219
G+ + L+ P+ K V+
Sbjct: 293 GSP---IEVTLAKPVDKDSYVR 311
>gi|194208379|ref|XP_001500866.2| PREDICTED: probable RNA-binding protein 46 [Equus caballus]
Length = 532
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GRFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 16/118 (13%)
Query: 68 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH 127
++ G +RG+AFVM++ +A A + L ++ P R + V + + +
Sbjct: 94 MEFSGENRGYAFVMYTTKEEAQLAIRILNNYEI---RPGRFIGVCVS----------LDN 140
Query: 128 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKD--YGFIDFSTHEAA 183
+ +F+ +P K+ +I D++K + + V+ +T K K+ + F+++ +H AA
Sbjct: 141 CR-LFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAA 197
>gi|363735090|ref|XP_003641506.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Gallus
gallus]
Length = 581
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 15/202 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K +GV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I K + ++ + + R K +DY F+ F+ E AV + A+N K D
Sbjct: 240 LSTTEETIE---KEFNNIKQGAVER---VKKIRDYAFVHFNKREDAVHAMKALNGKVL-D 292
Query: 198 GNSKVKLRARLSNPMPKTQAVK 219
G+ + L+ P+ K V+
Sbjct: 293 GSP---IEVTLAKPVDKDSYVR 311
>gi|345326219|ref|XP_001506578.2| PREDICTED: APOBEC1 complementation factor [Ornithorhynchus
anatinus]
Length = 655
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 94/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I +++ EGV + + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILAEMRKV-TEGVVEVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ F+ E AV + A+N K
Sbjct: 240 LSTSEETIEREFNNIKPGAVERV--------KKIRDYAFVHFNNREDAVGAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|344239872|gb|EGV95975.1| putative RNA-binding protein 46 [Cricetulus griseus]
Length = 503
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 143 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 201
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 202 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 258
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 259 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 310
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 311 -DGAS---IEVTLAKPVNKENTWRQHLNG 335
>gi|116788096|gb|ABK24755.1| unknown [Picea sitchensis]
Length = 506
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 93/195 (47%), Gaps = 7/195 (3%)
Query: 20 KRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAF 79
K+ + S+ + LF+GNI + +E + + + + G G +++ L+ D + +RGFAF
Sbjct: 195 KKLRVSESQPKNRLFLGNIPSNLKEEELTKIVSEQGP-GYQHLELIKDPKDTTRNRGFAF 253
Query: 80 VMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPH 139
V + A A K + F ++ + V +A R E VK+V++ +P +
Sbjct: 254 VEYYNKGCAEKAMKNMTHSK--FQLDDKLITVKWATSQRSSSEE----VKSVYVRNLPEN 307
Query: 140 WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 199
E Q+R+ +G+V ++VL ++D+GF+ ++ H +A+ I D
Sbjct: 308 VTEEQLRELFGRHGEVTKVVLLEQKPGQPKRDFGFVHYADHSSAMKAIEKTEKYTLEDRE 367
Query: 200 SKVKLRARLSNPMPK 214
V L LS+ P+
Sbjct: 368 LSVSLARPLSDKKPQ 382
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 13/144 (9%)
Query: 121 DPEIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 177
D E++A H VF+ +P + + + + +G+V +++ R A + +Y F+ F
Sbjct: 118 DDELLARPPHGTEVFVGNLPRNITKEDLTSLCEQHGEVFDVIIKRE---ASKLEYAFVTF 174
Query: 178 STHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFS 237
+T E+A I +N EF D + R+S PK + G + + ++ S
Sbjct: 175 TTKESAKKAIETLNGFEFKDK------KLRVSESQPKNRLFLGNIPSNLK-EEELTKIVS 227
Query: 238 RYGRGSGRAGHHFNRANFQRGRGF 261
G G + + R RGF
Sbjct: 228 EQGPGYQHLELIKDPKDTTRNRGF 251
>gi|327273505|ref|XP_003221521.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 47-like [Anolis
carolinensis]
Length = 603
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 98/199 (49%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 141 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAADKMKNRGFA 199
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 200 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 256
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +NN E +
Sbjct: 257 IETTEDTIK---KVFGQFNPGCVER---VKKIRDYAFVHFTSREDAVQAMNNLNNTEL-E 309
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 310 GSC---LEVTLAKPVDKEQ 325
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 20/117 (17%)
Query: 71 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 130
+G +RG+AFVM++ +A A K L ++ P R + V +
Sbjct: 109 DGKNRGYAFVMYTQKYEAKRAVKELNNYEI---RPGRLLGVCCS-----------VDNCR 154
Query: 131 VFLDGVPPHWKENQIRDQI----KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+F+ G+P K +I ++I +G DV IV A K + + F+++ +H AA
Sbjct: 155 LFIGGIPKMKKREEILEEISKVTEGVLDV--IVYASAADKMKNRGFAFVEYESHRAA 209
>gi|402595099|gb|EJW89025.1| heterogeneous nuclear ribonucleoprotein Q [Wuchereria bancrofti]
Length = 688
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 83/177 (46%), Gaps = 13/177 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS--DIQHEGLSRG 76
GK S N LF+GNI + +KE I + K++ EGV + + S D +RG
Sbjct: 361 GKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPDAGESRKNRG 419
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F F+ F H A A +++ + + + V +AE EPD E MA VK +++ +
Sbjct: 420 FCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVD--WAEQQEEPDEETMAKVKVLYVRNL 477
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E Q+++ YG+V R K +DY FI F E A+ + A+N K
Sbjct: 478 KEAVTEEQLKEMFSAYGEVDR--------AKKIRDYAFIHFMEREPAIKAMEALNEK 526
>gi|124487289|ref|NP_001074543.1| APOBEC1 complementation factor [Mus musculus]
gi|341940157|sp|Q5YD48.2|A1CF_MOUSE RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
Length = 595
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 96/205 (46%), Gaps = 19/205 (9%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGF
Sbjct: 123 TGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGF 181
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
AFV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 182 AFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNL 238
Query: 137 PPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 239 MLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKV 290
Query: 195 FSDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 291 L-DGSP---IEVTLAKPVDKDSYVR 311
>gi|149062707|gb|EDM13130.1| apobec-1 complementation factor, isoform CRA_d [Rattus norvegicus]
Length = 578
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 96/204 (47%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 116 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 174
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 175 FVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 231
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 232 LSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 283
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 284 -DGSP---IEVTLAKPVDKDSYVR 303
>gi|410895527|ref|XP_003961251.1| PREDICTED: APOBEC1 complementation factor-like [Takifugu rubripes]
Length = 613
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I +++ +GV ++ + + +RGFA
Sbjct: 125 GRLLGVCASVDNCRLFVGGIPKTKKREEIMCEMRKV-TDGVLDVIVYPSAADKSKNRGFA 183
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GH + V +AEP E D + MA VK +++ +
Sbjct: 184 FVEYESHRAAAMARRKLLPGRIQLWGH---AIAVDWAEPEVEVDEDTMATVKILYVRNLM 240
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ F+ E A+ +NA+N K
Sbjct: 241 LQTTEETIEKEFNSLKQGAVERV--------KKIRDYAFVHFTQREDAIHAMNALNGK-V 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 VDGSP---IEVTLAKPVDKDSYVR 312
>gi|355782924|gb|EHH64845.1| hypothetical protein EGM_18166 [Macaca fascicularis]
Length = 605
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 97/217 (44%), Gaps = 32/217 (14%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCHVDAMAAYKRL-----QKPDVV---------FGHPERTVKVAFAEPLREPDPEI 124
FV + H A A ++L P +V +GHP + V +AEP E D +
Sbjct: 183 FVEYESHRAAAMARRKLLPGIPAPPSLVTVTPGRIQLWGHP---IAVDWAEPEVEVDEDT 239
Query: 125 MAHVKTVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEA 182
M+ VK +++ + E I + G V R+ K +DY F+ FS E
Sbjct: 240 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNRED 291
Query: 183 AVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 219
AV + A+N K DG+ + L+ P+ K V+
Sbjct: 292 AVEAMKALNGKVL-DGSP---IEVTLAKPVDKDSYVR 324
>gi|148683481|gb|EDL15428.1| mCG21951 [Mus musculus]
Length = 468
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFSKFKPGAVERV--------KKLRDYAFVHFFHREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|149062706|gb|EDM13129.1| apobec-1 complementation factor, isoform CRA_c [Rattus norvegicus]
Length = 586
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 96/204 (47%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 116 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 174
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 175 FVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 231
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 232 LSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 283
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 284 -DGSP---IEVTLAKPVDKDSYVR 303
>gi|224097144|ref|XP_002310850.1| predicted protein [Populus trichocarpa]
gi|222853753|gb|EEE91300.1| predicted protein [Populus trichocarpa]
Length = 84
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 52/87 (59%), Gaps = 10/87 (11%)
Query: 371 VKRSFHVMDHEPDYMGPRRFRPRLD-------YNDPVIPFHGSHHHDNVGACSNHYSDDY 423
+KRSF++ D +PDYM P R RPRLD Y DP F G+H+ D GA S+ Y +Y
Sbjct: 1 MKRSFYMTDQDPDYMEPSRLRPRLDFADPRVDYADPAASFRGTHYRDTYGAGSDPYFHEY 60
Query: 424 HVPNYGAHPPYPPYYGDDRLYGGGYFY 450
+Y PYPPYYG D YGGGY Y
Sbjct: 61 RGSDYD---PYPPYYGRDHSYGGGYHY 84
>gi|311771766|ref|NP_001185748.1| APOBEC1 complementation factor isoform 4 [Homo sapiens]
Length = 602
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 94/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 132 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 190
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GH + V +AEP E D + M+ VK +++ +
Sbjct: 191 FVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVKILYVRNLM 247
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 248 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 299
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 300 -DGSP---IEVTLAKPVDKDSYVR 319
>gi|170592443|ref|XP_001900974.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
gi|158591041|gb|EDP29654.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
Length = 709
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 83/179 (46%), Gaps = 13/179 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS--DIQHEGLSRG 76
GK S N LF+GNI + +KE I + K++ EGV + + S D +RG
Sbjct: 362 GKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPDAGESRKNRG 420
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F F+ F H A A +++ + + + V +AE EPD E MA VK +++ +
Sbjct: 421 FCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVD--WAEQQEEPDEETMAKVKVLYVRNL 478
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E Q+++ YG+V R K +DY FI F E A+ + A+N E
Sbjct: 479 KEAVTEEQLKEMFSAYGEVDR--------AKKIRDYAFIHFMEREPAIKAMEALNGTEL 529
>gi|6996658|gb|AAF34824.1|AF209192_1 Apobec-1 complementation factor [Homo sapiens]
Length = 586
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 125/303 (41%), Gaps = 49/303 (16%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GH + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRTAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS + AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNRKDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF 255
DG+ + L+ P+ K ++ RY RG+G R
Sbjct: 292 -DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG------GRGTM 322
Query: 256 QRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGYNAPS-RAA 310
+G Y G+ + ++ +G + Y F +G S R APS R A
Sbjct: 323 LQGEYTYSLGQVYDPTTTYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAIIRAPSVRGA 382
Query: 311 AGA 313
AG
Sbjct: 383 AGV 385
>gi|323650030|gb|ADX97101.1| APOBEC1 complementation factor [Perca flavescens]
Length = 450
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I +++ +GV ++ + + +RGFA
Sbjct: 34 GRLLGVCASVDNCRLFVGGIPKTKKREEILTEMRKV-TDGVVDVIVYPSAADKSKNRGFA 92
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GH + V +AEP E D + MA VK +++ +
Sbjct: 93 FVEYESHRAAAMARRKLLPGRIQLWGH---AIAVDWAEPEVEVDEDTMASVKILYVRNLM 149
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ F+ E A+ +NA+N K
Sbjct: 150 LQTTEETIEKEFNSLRPGAVERV--------KKIRDYAFVHFTQREDAINAMNALNGK-V 200
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 201 VDGSP---IEVTLAKPVDKDSYVR 221
>gi|8515877|gb|AAF76221.1|AF271789_1 APOBEC-1 complementation factor [Homo sapiens]
Length = 586
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 125/303 (41%), Gaps = 49/303 (16%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GH + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS + AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNRKDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF 255
DG+ + L+ P+ K ++ RY RG+G R
Sbjct: 292 -DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG------GRGTM 322
Query: 256 QRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGYNAPS-RAA 310
+G Y G+ + ++ +G + Y F +G S R APS R A
Sbjct: 323 LQGEYTYSLGQVYDPTTTYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAIIRAPSVRGA 382
Query: 311 AGA 313
AG
Sbjct: 383 AGV 385
>gi|344245091|gb|EGW01195.1| APOBEC1 complementation factor [Cricetulus griseus]
Length = 1001
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 93/202 (46%), Gaps = 15/202 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I + I K +DY F+ FS E AV + A+N K D
Sbjct: 240 LSTSEEMIEKEFN------SIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVL-D 292
Query: 198 GNSKVKLRARLSNPMPKTQAVK 219
G+ + L+ P+ K V+
Sbjct: 293 GS---PIEVTLAKPVDKDSYVR 311
>gi|19173760|ref|NP_596891.1| APOBEC1 complementation factor [Rattus norvegicus]
gi|15077247|gb|AAK83095.1|AF290984_1 APOBEC-1 complementation factor short isoform [Rattus norvegicus]
Length = 586
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 96/204 (47%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|50950169|ref|NP_001002955.1| RNA-binding protein 47 [Canis lupus familiaris]
gi|75075043|sp|Q9XSR3.1|RBM47_CANFA RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|5441611|emb|CAB46854.1| hypothetical protein [Canis lupus familiaris]
Length = 592
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 98/199 (49%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 141 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 199
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 200 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 256
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N++N E +
Sbjct: 257 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVLAMNSLNGTEL-E 309
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 310 GSC---LEVTLAKPVDKEQ 325
>gi|81916405|sp|Q923K9.1|A1CF_RAT RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|15072439|gb|AAK50145.1| APOBEC-1 complementation factor long isoform [Rattus norvegicus]
Length = 594
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 96/204 (47%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|8515879|gb|AAF76222.1|AF271790_1 APOBEC-1 complementation factor related protein [Homo sapiens]
Length = 569
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 125/303 (41%), Gaps = 49/303 (16%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 107 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 165
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GH + V +AEP E D + M+ VK +++ +
Sbjct: 166 FVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVKILYVRNLM 222
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS + AV + A+N K
Sbjct: 223 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNRKDAVEAMKALNGKVL 274
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF 255
DG+ + L+ P+ K ++ RY RG+G R
Sbjct: 275 -DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG------GRGTM 305
Query: 256 QRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGYNAPS-RAA 310
+G Y G+ + ++ +G + Y F +G S R APS R A
Sbjct: 306 LQGEYTYSLGQVYDPTTTYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAIIRAPSVRGA 365
Query: 311 AGA 313
AG
Sbjct: 366 AGV 368
>gi|149062704|gb|EDM13127.1| apobec-1 complementation factor, isoform CRA_a [Rattus norvegicus]
Length = 375
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 96/204 (47%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 116 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 174
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 175 FVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 231
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 232 LSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 283
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 284 -DGSP---IEVTLAKPVDKDSYVR 303
>gi|144952800|gb|ABP04054.1| RNA-binding protein [Pinctada fucata]
Length = 624
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 16/194 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK S N LFVGNI + +K+ I ++ + + I S + +RGFA
Sbjct: 230 GKSIKVNISVANQRLFVGNIPKSKSKDEIMEEFSKKTEDLTDVIIYRSAEKENQKNRGFA 289
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A ++L V+G V V +A+P+ +PD + M+ VK +++ +
Sbjct: 290 FLEYESHKAASTAKRKLSSGRTKVWGC---DVIVDWADPIDDPDSDTMSKVKVLYVRNLT 346
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ ++++ YG V R+ K KDYGFI F + AV + +N ++
Sbjct: 347 SDVTEDTLKEKFGEYGKVERV--------KKIKDYGFIHFEERDDAVKAMEGMNGQKL-- 396
Query: 198 GNSKVKLRARLSNP 211
K+++ L+ P
Sbjct: 397 --GKLEMEVSLAKP 408
>gi|348529370|ref|XP_003452186.1| PREDICTED: RNA-binding protein 47-like [Oreochromis niloticus]
Length = 607
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 24/214 (11%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I T +E I +++ EGV ++ + + + +RGFA
Sbjct: 153 GRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKV-TEGVLDVIVYASAADKMKNRGFA 211
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 212 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 268
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E IR + G V R+ K +DY F+ F++ + AV ++ +N E
Sbjct: 269 METSEEAIRQIFSQFNPGCVERV--------KKIRDYAFVHFTSRDDAVLAMDNLNGTEV 320
Query: 196 SDGNSKVKLRARLSNPMPKTQ-----AVKGGMSG 224
+V L+ P+ K Q A KGG S
Sbjct: 321 EGSCIEVT----LAKPVDKEQYSRQKASKGGASA 350
>gi|149062705|gb|EDM13128.1| apobec-1 complementation factor, isoform CRA_b [Rattus norvegicus]
Length = 397
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 96/204 (47%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 116 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 174
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 175 FVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 231
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 232 LSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 283
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 284 -DGSP---IEVTLAKPVDKDSYVR 303
>gi|390358936|ref|XP_003729369.1| PREDICTED: APOBEC1 complementation factor-like isoform 2
[Strongylocentrotus purpuratus]
Length = 487
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G PS DN LFVG I +E I ++ E V ++ + I + +RGFA
Sbjct: 126 GRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKV-TEQVVDVIVYPSINDKAKNRGFA 184
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP ++ D ++M VK +++ +
Sbjct: 185 FVEYENHRAAAMARRKLIPGRIQLWGH---QIMVDWAEPEQDVDEDVMRGVKILYVRNLM 241
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
H E I + + G V R+ K +D+ FI F T E A+ +NA+++
Sbjct: 242 LHTTEETIAKEFNAFKEGSVERV--------KKLRDFAFIHFFTREDALNAMNAMDDP-L 292
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG K+ L+ P+ K V+
Sbjct: 293 LDG---AKIEVVLAKPVDKGNYVR 313
>gi|393911205|gb|EJD76209.1| HnRNP-R [Loa loa]
Length = 729
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 83/179 (46%), Gaps = 13/179 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS--DIQHEGLSRG 76
GK S N LF+GNI + +KE I + K++ EGV + + S D +RG
Sbjct: 382 GKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPDAGESRKNRG 440
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F F+ F H A A +++ + + + V +AE EPD E MA VK +++ +
Sbjct: 441 FCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVD--WAEQQEEPDEETMAKVKVLYVRNL 498
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E Q+++ YG+V R K +DY FI F E A+ + A+N E
Sbjct: 499 KEAVTEEQLKEMFSAYGEVDR--------AKKIRDYAFIHFMEREPAIKAMEALNGTEL 549
>gi|348524056|ref|XP_003449539.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Oreochromis
niloticus]
Length = 612
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 94/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K +GV ++ + + +RGFA
Sbjct: 125 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TDGVVDVIVYPSAADKSKNRGFA 183
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GH + V +AEP E D + MA VK +++ +
Sbjct: 184 FVEYESHRAAAMARRKLLPGRIQLWGH---AIAVDWAEPEVEVDEDTMATVKILYVRNLM 240
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ F+ E A+ + A+N K
Sbjct: 241 LQTTEETIEKEFNSLKPGAVERV--------KKIRDYAFVHFTQREDAINAMKALNGK-V 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 VDGSP---IEVTLAKPVDKDSYVR 312
>gi|393911204|gb|EJD76208.1| HnRNP-R, variant [Loa loa]
Length = 696
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 83/179 (46%), Gaps = 13/179 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS--DIQHEGLSRG 76
GK S N LF+GNI + +KE I + K++ EGV + + S D +RG
Sbjct: 349 GKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPDAGESRKNRG 407
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F F+ F H A A +++ + + + V +AE EPD E MA VK +++ +
Sbjct: 408 FCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVD--WAEQQEEPDEETMAKVKVLYVRNL 465
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E Q+++ YG+V R K +DY FI F E A+ + A+N E
Sbjct: 466 KEAVTEEQLKEMFSAYGEVDR--------AKKIRDYAFIHFMEREPAIKAMEALNGTEL 516
>gi|291385687|ref|XP_002709446.1| PREDICTED: RNA binding motif protein 47-like isoform 1 [Oryctolagus
cuniculus]
Length = 591
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 21/210 (10%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 140 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 198
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 199 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 255
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N++N E +
Sbjct: 256 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVRAMNSLNGTEL-E 308
Query: 198 GNSKVKLRARLSNPMPKTQ------AVKGG 221
G+ L L+ P+ K Q A KGG
Sbjct: 309 GSC---LEVTLAKPVDKEQYSRYQKAAKGG 335
>gi|58477316|gb|AAH89622.1| APOBEC1 complementation factor [Mus musculus]
Length = 384
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 96/205 (46%), Gaps = 19/205 (9%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGF
Sbjct: 123 TGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGF 181
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
AFV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 182 AFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNL 238
Query: 137 PPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 239 MLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKV 290
Query: 195 FSDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 291 L-DGSP---IEVTLAKPVDKDSYVR 311
>gi|148709767|gb|EDL41713.1| mCG1979, isoform CRA_a [Mus musculus]
Length = 369
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 96/205 (46%), Gaps = 19/205 (9%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGF
Sbjct: 108 TGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGF 166
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
AFV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 167 AFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNL 223
Query: 137 PPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 224 MLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKV 275
Query: 195 FSDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 276 L-DGSP---IEVTLAKPVDKDSYVR 296
>gi|219521533|gb|AAI43943.1| RNA binding motif protein 47 [Homo sapiens]
Length = 593
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ PM K Q
Sbjct: 308 GSC---LEVTLAKPMDKEQ 323
>gi|27462518|gb|AAO15465.1|AF442133_1 APOBEC-1 complementation factor 43 kDa variant [Rattus norvegicus]
Length = 383
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 96/204 (47%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|358336055|dbj|GAA54619.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 292
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 90/194 (46%), Gaps = 15/194 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LFVG I TK+ I ++ +GV+++ + + + +RGFA
Sbjct: 110 GKMLGVCLSVDNCRLFVGGIPKNKTKDEIMAEMLKV-TDGVKDVIVYPSVADKTKNRGFA 168
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP RE D +IM+ V+ +++ +
Sbjct: 169 FVEYENHKAAAMARRKLIPGRIHLWGH---QIAVDWAEPEREVDEDIMSKVRILYVRNLM 225
Query: 138 PHWKENQIRDQIK---GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
H E +RD G D + V K +DY F+ F A A + ++ K
Sbjct: 226 LHTTEEALRDHCNRAIGAVDAVERV-------KKIRDYAFVHFRDRLQATAALRQLDGKS 278
Query: 195 FSDGNSKVKLRARL 208
F L A L
Sbjct: 279 FLITYKTATLLALL 292
>gi|149610011|ref|XP_001505728.1| PREDICTED: RNA-binding protein 47 isoform 1 [Ornithorhynchus
anatinus]
Length = 591
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 21/212 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 144 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAADKMKNRGFA 202
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 203 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 259
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I+ K +G + R K +DY F+ F + E AV +N++N E +
Sbjct: 260 IETTEEAIK---KSFGQFNPGCVER---VKKIRDYAFVHFVSREDAVRAMNSLNGTEL-E 312
Query: 198 GNSKVKLRARLSNPMPKTQ------AVKGGMS 223
G+ L L+ P+ K Q A KGG +
Sbjct: 313 GSC---LEVTLAKPVDKEQYTRYQKAAKGGAA 341
>gi|27462520|gb|AAO15466.1|AF442134_1 APOBEC-1 complementation factor 45 kDa variant [Rattus norvegicus]
Length = 405
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 96/204 (47%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|148709768|gb|EDL41714.1| mCG1979, isoform CRA_b [Mus musculus]
Length = 767
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 96/205 (46%), Gaps = 19/205 (9%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGF
Sbjct: 295 TGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGF 353
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
AFV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 354 AFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNL 410
Query: 137 PPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 411 MLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKV 462
Query: 195 FSDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 463 L-DGSP---IEVTLAKPVDKDSYVR 483
>gi|193683845|ref|XP_001950620.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Acyrthosiphon pisum]
Length = 533
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 17/205 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LF+GNI + KE I ++++G G+ + + S +RG
Sbjct: 228 GKNIKVNISVPNLRLFIGNIPKSKGKEDI---MEEFGKITSGLTEVIIYSSPDDRRKNRG 284
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL P+ V+G + V +A+P EPD E M+ VK +++
Sbjct: 285 FCFLEYDSHKAASVAKRRLSAPNYKVWGC---DIIVDWADPQEEPDDETMSKVKVLYVRN 341
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ EN++++ + +G V R+ K KDY FI F+ A+ + +N
Sbjct: 342 LTQEVTENRLKETFEVHGSVERV--------KKIKDYAFIHFNDRGCALKALEELNGSNL 393
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKG 220
+V L S+ K + ++
Sbjct: 394 DGATLEVSLAKPPSDKKKKEEILRA 418
>gi|348571794|ref|XP_003471680.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Cavia porcellus]
Length = 592
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 21/210 (10%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVQAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ------AVKGG 221
G+ L L+ P+ K Q A KGG
Sbjct: 308 GSC---LEVTLAKPVDKEQYSRYQKAAKGG 334
>gi|347965861|ref|XP_003435825.1| AGAP001419-PC [Anopheles gambiae str. PEST]
gi|333470322|gb|EGK97589.1| AGAP001419-PC [Anopheles gambiae str. PEST]
Length = 532
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 95/202 (47%), Gaps = 11/202 (5%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK+ G S +N LFVGNI ++ + ++ + VE I + S + +RGF
Sbjct: 237 GKKIGVTISFNNHRLFVGNIPKNRDRDELLEEFAKHAPGLVEVI-IYSSPDDKKKNRGFC 295
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
F+ + H A A +RL + + + + V +A+P EPD + M+ VK +++ +
Sbjct: 296 FLEYESHKAASLAKRRLGTGRIKVWNCD--IIVDWADPQEEPDEQTMSKVKVLYVRNLTQ 353
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198
E ++++ + +G V R+ K KDY F+ F + AV + ++ KE
Sbjct: 354 DTSEEKLKESFEQFGRVERV--------KKIKDYAFVHFEDRDNAVKAMKDLDGKEVGGS 405
Query: 199 NSKVKLRARLSNPMPKTQAVKG 220
N +V L S+ K + ++
Sbjct: 406 NIEVSLAKPPSDKKKKEEILRA 427
>gi|354490876|ref|XP_003507582.1| PREDICTED: APOBEC1 complementation factor-like [Cricetulus griseus]
Length = 592
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 96/204 (47%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|357144466|ref|XP_003573302.1| PREDICTED: APOBEC1 complementation factor-like [Brachypodium
distachyon]
Length = 476
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 11/206 (5%)
Query: 21 RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
RC S+ LFVGN+ +++ + +K G GV NI + D+ +RGF FV
Sbjct: 183 RCSL--SQAKHRLFVGNVPKGLSEDELTSIIKGKG-PGVVNIEMFKDLHDPSRNRGFLFV 239
Query: 81 MFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP-----LREPDPEIMAHVKTVFLDG 135
+ H A + ++L PD + T V++AEP A VKT+++
Sbjct: 240 EYYNHACADYSRQKLSSPDFKVDGSQLT--VSWAEPKGSSSSSSDSSSSAAQVKTIYVKN 297
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P + + +++D + +G+V +IVL + KR D+GF+ F+ +A+ + E
Sbjct: 298 LPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKGSEKYEI 356
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGG 221
+V + LS+ P GG
Sbjct: 357 DGQVLEVSMAKPLSDKKPDHSVRPGG 382
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 79/174 (45%), Gaps = 20/174 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+F+G + T+E +++ + G + + L+ D + ++GFAFV F+ A A
Sbjct: 113 VFIGGLPRDTTEEDLRELCEPLG--EIHEVRLMKD-KDTKENKGFAFVTFTAKDVAQRAI 169
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+ L D H RT++ + ++ +F+ VP E+++ IKG
Sbjct: 170 EELHDKD----HKGRTLRCSLSQAKHR-----------LFVGNVPKGLSEDELTSIIKGK 214
Query: 153 GD-VIRIVLARNMSTAKR-KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204
G V+ I + +++ R + + F+++ H A +++ +F S++ +
Sbjct: 215 GPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYSRQKLSSPDFKVDGSQLTV 268
>gi|426364774|ref|XP_004049471.1| PREDICTED: APOBEC1 complementation factor [Gorilla gorilla gorilla]
Length = 548
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 83/178 (46%), Gaps = 15/178 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GH + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGK 289
>gi|47209668|emb|CAF95095.1| unnamed protein product [Tetraodon nigroviridis]
Length = 677
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 19/210 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I T +E I +++ EGV ++ + + + +RGFA
Sbjct: 158 GRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKV-TEGVIDVIVYASAADKMKNRGFA 216
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 217 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 273
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E IR + G V R+ K +DY F+ F++ + AV +N +N E
Sbjct: 274 METSEETIRKVFSQWNPGCVERV--------KKIRDYAFVHFNSRDDAVLAMNQLNGTEV 325
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGG 225
+V L+ P+ K Q + S G
Sbjct: 326 EGSCIEVT----LAKPVDKEQYSRQKASKG 351
>gi|241236734|ref|XP_002400928.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215496107|gb|EEC05748.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 438
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 11/201 (5%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S +N LFVGNI KE + ++ + G+ + + S + +RGF
Sbjct: 236 GKYIGVTISINNHRLFVGNIPKNRGKEELYEEFSKHA-PGLTEVIIYSSPDDKKKNRGFC 294
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
F+ + H A A +RL + + + V +A+P EPD E MA VK +++ +
Sbjct: 295 FLEYESHKAASLAKRRLSTGRIKVWSCD--IIVDWADPQEEPDQETMAKVKVLYVRNLTA 352
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198
E ++++ + +G V R+ K KDY F+ F + AV +N + K+
Sbjct: 353 DVTEERLKELFEQHGRVERV--------KKIKDYAFVHFEERDHAVKAMNQLQGKDLCGA 404
Query: 199 NSKVKLRARLSNPMPKTQAVK 219
+V L S+ K + ++
Sbjct: 405 PMEVSLAKPPSDKKKKEEVLR 425
>gi|395856660|ref|XP_003800739.1| PREDICTED: RNA-binding protein 47 [Otolemur garnettii]
Length = 591
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 98/199 (49%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N++N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVHAMNSLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|224131824|ref|XP_002328117.1| predicted protein [Populus trichocarpa]
gi|222837632|gb|EEE75997.1| predicted protein [Populus trichocarpa]
Length = 419
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 92/195 (47%), Gaps = 4/195 (2%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GKR + S+ LF+ NI +W +E + + + + G G N+ LV + +RG+A
Sbjct: 108 GKRIKCSTSQAKHRLFLSNIPRSWGEEDLSKFVAEVG-PGTTNVQLVKVSESSSNNRGYA 166
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
FV + + +A A Y R + D F + V++A+P + D + VK +++ +P
Sbjct: 167 FVEY--YNNACAEYSRQKMIDPKFKLGDNAPSVSWADP-KNADSSTSSQVKAIYVKNLPK 223
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198
++Q++ + +G + ++VL S ++ GF+ F+ +A+ + E +
Sbjct: 224 TVTQDQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKDTEKYELNGQ 283
Query: 199 NSKVKLRARLSNPMP 213
+ + L S P
Sbjct: 284 SVECALAKPQSEQKP 298
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 123 EIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 179
E++A H V++ GVP E ++D + G+V + + + ++ K + F+ F +
Sbjct: 31 ELLARPPHGSEVYIGGVPNDASEEDLKDFCESVGEVTEVRMMKGKDSSDNKGFAFVTFRS 90
Query: 180 HEAAVACINAINNKEFSD-----GNSKVKLRARLSN 210
+ A I +NN EF S+ K R LSN
Sbjct: 91 VDLATKAIGELNNTEFKGKRIKCSTSQAKHRLFLSN 126
>gi|126272659|ref|XP_001363608.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Monodelphis
domestica]
Length = 586
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 94/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AM K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMGRRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E + + G V R+ K +DY F+ F+ + AV + A+N K
Sbjct: 240 LSTSEETLEKEFNSIKPGSVERV--------KKIRDYAFVHFNNRDDAVNAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|444513680|gb|ELV10430.1| RNA-binding protein 47 [Tupaia chinensis]
Length = 580
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEVAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVLAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|126272657|ref|XP_001363520.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Monodelphis
domestica]
Length = 594
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 94/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AM K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMGRRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E + + G V R+ K +DY F+ F+ + AV + A+N K
Sbjct: 240 LSTSEETLEKEFNSIKPGSVERV--------KKIRDYAFVHFNNRDDAVNAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
>gi|241606359|ref|XP_002405718.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215500664|gb|EEC10158.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 411
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 13/181 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GKR G S DN LFVG I T T+E + ++ EGV N+ L + + + +RGFA
Sbjct: 133 GKRIGVCKSTDNCRLFVGGIPRTKTREDVFSEMSRV-TEGVVNVILYTSVMDKTRNRGFA 191
Query: 79 FVMFSCHVDAMAAYKRLQ--KPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FV ++ H A A +++ K + GH V V +AEP + D + M+ V +++ +
Sbjct: 192 FVEYTDHKTAAVARRKMIPGKMKLWNGH---DVAVDWAEPEPQVDEDTMSKVMVLYVRNL 248
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI-NNKEF 195
E+++R+ G + + K +D+ FI + + E A + A+ N F
Sbjct: 249 VLSTTEDELREVFSLNGSL------KVSKVKKIRDFAFIHYRSREEATTALEAMQTNNAF 302
Query: 196 S 196
+
Sbjct: 303 T 303
>gi|118600907|gb|AAH34402.1| RBM47 protein [Homo sapiens]
gi|119613370|gb|EAW92964.1| RNA-binding protein, isoform CRA_a [Homo sapiens]
Length = 497
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|242064522|ref|XP_002453550.1| hypothetical protein SORBIDRAFT_04g007860 [Sorghum bicolor]
gi|241933381|gb|EES06526.1| hypothetical protein SORBIDRAFT_04g007860 [Sorghum bicolor]
Length = 391
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 85/173 (49%), Gaps = 11/173 (6%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG + T+E+ + + YG + + ++ D +H + RGF FV FS D
Sbjct: 58 IFVGGVAWETTEESFSKHFEKYGA--ITDSVIMKD-KHTKMPRGFGFVTFS---DPSVID 111
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
K L+ V+ G RTV+V P E + + +F+ G+PP E++++D Y
Sbjct: 112 KVLEDDHVIDG---RTVEVKRTVPREEMTTKDGPKTRKIFIGGLPPSLTEDELKDHFSSY 168
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
G V+ + + ST + + +GF+ F + ++ I+ ++ G +V+++
Sbjct: 169 GKVVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDL--GGKQVEIK 219
>gi|349585036|ref|NP_001073493.2| probable RNA-binding protein 46 [Danio rerio]
Length = 523
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 15/189 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G+I KE I++++ EGV ++ + +RGFA
Sbjct: 126 GKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKV-TEGVMDVIVYPSAVDRMKNRGFA 184
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +AEP +E D E M V+ +++ +
Sbjct: 185 FVEYESHKAAAMARRKLIPGTFQLWGH---TIQVDWAEPEKELDEETMQRVRVLYVRNLM 241
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E +R + G V R+ K DY FI F E A+ + ++N K
Sbjct: 242 LSTTEETLRSEFSQLKPGSVERV--------KKLTDYAFIHFYNREDALTALESMNGKVI 293
Query: 196 SDGNSKVKL 204
+V L
Sbjct: 294 DGSPIEVTL 302
>gi|291385689|ref|XP_002709447.1| PREDICTED: RNA binding motif protein 47-like isoform 2 [Oryctolagus
cuniculus]
Length = 522
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 21/210 (10%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 140 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 198
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 199 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 255
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N++N E +
Sbjct: 256 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVRAMNSLNGTEL-E 308
Query: 198 GNSKVKLRARLSNPMPKTQ------AVKGG 221
G+ L L+ P+ K Q A KGG
Sbjct: 309 GSC---LEVTLAKPVDKEQYSRYQKAAKGG 335
>gi|410917474|ref|XP_003972211.1| PREDICTED: RNA-binding protein 47-like [Takifugu rubripes]
Length = 601
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 19/210 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I T +E I +++ EGV ++ + + + +RGFA
Sbjct: 151 GRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKV-TEGVIDVIVYASAADKMKNRGFA 209
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 210 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 266
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E IR + G V R+ K +DY F+ F++ + AV +N +N E
Sbjct: 267 METSEETIRKVFSQWNPGCVERV--------KKIRDYAFVHFNSRDDAVLAMNHLNGTEV 318
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGG 225
+V L+ P+ K Q + S G
Sbjct: 319 EGSCIEVT----LAKPVDKEQYSRQKASKG 344
>gi|291233435|ref|XP_002736660.1| PREDICTED: apobec-1 complementation factor-like [Saccoglossus
kowalevskii]
Length = 625
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 102/218 (46%), Gaps = 22/218 (10%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I ++ I +++ EGV ++ + + +RGFA
Sbjct: 143 GRYLGVCASVDNCRLFVGGIPKNKKRDEILHEMQKV-TEGVVDVIVYPSATDKTKNRGFA 201
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP +E D +IM VK +++ +
Sbjct: 202 FVEYENHRAAAMARRKLIPGRIQLWGH---QIAVDWAEPEQEVDEDIMKTVKVLYVRNLM 258
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E I + G V R+ K +DY F+ F T E A+ +NA+N
Sbjct: 259 LNTTEETIEKEFNSLKEGSVERV--------KKIRDYAFVHFVTREDALYALNAMNGHNV 310
Query: 196 SDGNSKVKLRARLSNPMPKTQAV---KGGMSGGFRIGH 230
DG+ + L+ P+ + V +GG G F G+
Sbjct: 311 -DGSV---VEVVLAKPVDRENYVRYTRGGARGTFSQGY 344
>gi|403300669|ref|XP_003941042.1| PREDICTED: RNA-binding protein 47 [Saimiri boliviensis boliviensis]
Length = 631
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|427784529|gb|JAA57716.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Rhipicephalus pulchellus]
Length = 608
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 11/201 (5%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S +N LFVGNI KE + ++ + G+ + + S + +RGF
Sbjct: 229 GKYIGVTISINNHRLFVGNIPKNRGKEELFEEFSKHA-PGLTEVIIYSSPDDKKKNRGFC 287
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
F+ + H A A +RL + + + V +A+P EPD E MA VK +++ +
Sbjct: 288 FLEYESHKAASLAKRRLSTGRIKVWSCD--IIVDWADPQEEPDEETMAKVKVLYVRNLTT 345
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198
E ++++ + +G V R+ K KDY F+ F + AV + + K+
Sbjct: 346 DVTEEKLKELFEAHGRVERV--------KKIKDYAFVHFEERDHAVRAMEQLQGKDLCGA 397
Query: 199 NSKVKLRARLSNPMPKTQAVK 219
+V L S+ K + ++
Sbjct: 398 PMEVSLAKPPSDKKKKEEVLR 418
>gi|126331699|ref|XP_001365552.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 592
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I+ K +G + R K +DY F+ F++ E AV +N++N E +
Sbjct: 255 IETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNSLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|147905061|ref|NP_001086049.1| APOBEC1 complementation factor [Xenopus laevis]
gi|49522081|gb|AAH74127.1| MGC81834 protein [Xenopus laevis]
Length = 584
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 93/204 (45%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I +++ +GV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKRREEILAEMRKV-TDGVLDVIVYPSAADKAKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ F AV +N +N K
Sbjct: 240 LTTAEETIEKEFSSVKPGSVERV--------KKIRDYAFVHFRNRADAVDAMNVLNGK-I 290
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 291 IDGSP---IEVTLAKPVDKESYVR 311
>gi|123884311|sp|Q08BH5.1|RBM46_DANRE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|115528134|gb|AAI24721.1| Zgc:153695 [Danio rerio]
Length = 510
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 15/189 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G+I KE I++++ EGV ++ + +RGFA
Sbjct: 113 GKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKV-TEGVMDVIVYPSAVDRMKNRGFA 171
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +AEP +E D E M V+ +++ +
Sbjct: 172 FVEYESHKAAAMARRKLIPGTFQLWGH---TIQVDWAEPEKELDEETMQRVRVLYVRNLM 228
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E +R + G V R+ K DY FI F E A+ + ++N K
Sbjct: 229 LSTTEETLRSEFSQLKPGSVERV--------KKLTDYAFIHFYNREDALTALESMNGKVI 280
Query: 196 SDGNSKVKL 204
+V L
Sbjct: 281 DGSPIEVTL 289
>gi|20532346|ref|NP_620704.1| RNA-binding protein 47 [Mus musculus]
gi|188497698|ref|NP_848541.2| RNA-binding protein 47 [Mus musculus]
gi|188497701|ref|NP_001120854.1| RNA-binding protein 47 [Mus musculus]
gi|81916136|sp|Q91WT8.1|RBM47_MOUSE RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|15488668|gb|AAH13481.1| RNA binding motif protein 47 [Mus musculus]
gi|21707976|gb|AAH34195.1| Rbm47 protein [Mus musculus]
gi|26351775|dbj|BAC39524.1| unnamed protein product [Mus musculus]
gi|74206583|dbj|BAE41553.1| unnamed protein product [Mus musculus]
gi|133778325|gb|AAI12903.1| RNA binding motif protein 47 [Mus musculus]
gi|148705813|gb|EDL37760.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
gi|148705814|gb|EDL37761.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
Length = 590
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 21/226 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I + I +++ EGV N+ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMQTVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ------AVKGGMSGGFRIGHGSSRTFS 237
G+ L L+ P+ K Q A KGG + S +S
Sbjct: 308 GSC---LEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYS 350
>gi|26330794|dbj|BAC29127.1| unnamed protein product [Mus musculus]
Length = 590
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 21/226 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I + I +++ EGV N+ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMQTVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ------AVKGGMSGGFRIGHGSSRTFS 237
G+ L L+ P+ K Q A KGG + S +S
Sbjct: 308 GSC---LEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYS 350
>gi|332819357|ref|XP_001144567.2| PREDICTED: RNA-binding protein 47 isoform 1 [Pan troglodytes]
gi|402869222|ref|XP_003898665.1| PREDICTED: RNA-binding protein 47 isoform 4 [Papio anubis]
gi|426344164|ref|XP_004038645.1| PREDICTED: RNA-binding protein 47 isoform 3 [Gorilla gorilla
gorilla]
Length = 555
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 101 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 159
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 160 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 216
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 217 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 269
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 270 GSC---LEVTLAKPVDKEQ 285
>gi|221044912|dbj|BAH14133.1| unnamed protein product [Homo sapiens]
Length = 555
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 101 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 159
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 160 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 216
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 217 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 269
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 270 GSC---LEVTLAKPVDKEQ 285
>gi|119613372|gb|EAW92966.1| RNA-binding protein, isoform CRA_c [Homo sapiens]
Length = 514
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|397524566|ref|XP_003832261.1| PREDICTED: RNA-binding protein 47 isoform 4 [Pan paniscus]
Length = 555
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 101 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 159
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 160 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 216
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 217 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 269
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 270 GSC---LEVTLAKPVDKEQ 285
>gi|146231848|gb|ABQ12999.1| hypothetical protein LOC54502 [Bos taurus]
Length = 492
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|355715825|gb|AES05414.1| RNA binding motif protein 47 [Mustela putorius furo]
Length = 387
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 100/210 (47%), Gaps = 21/210 (10%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 32 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 90
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 91 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 147
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F + E AV +N +N E +
Sbjct: 148 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFVSREDAVHAMNNLNGTEL-E 200
Query: 198 GNSKVKLRARLSNPMPKTQ------AVKGG 221
G+ L L+ P+ K Q A KGG
Sbjct: 201 GSC---LEVTLAKPVDKEQYSRYQKAAKGG 227
>gi|223649326|gb|ACN11421.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 628
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 18/180 (10%)
Query: 20 KRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRGF 77
K G S N+ LFVG+I T+E+I L D+ EG++ + L + +RGF
Sbjct: 237 KHLGVCISVANNRLFVGSIPKNKTRESI---LDDFSKVTEGLQEVILYHQPDDKETNRGF 293
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMA-HVKTVFLDG 135
F+ + H A A + L V V+G+P V V +A P+ E D ++MA K +F+
Sbjct: 294 CFLEYEDHKSAAQARRCLMSGKVMVWGNP---VTVEWANPVTERDTDVMANQAKVLFVRK 350
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E + +G + R+ K KDY F+ F +AAV + +N KE
Sbjct: 351 LATSVTEELLVKTFSAFGKLERVY--------KLKDYAFVHFEDRDAAVKAMVDMNGKEL 402
>gi|62733051|gb|AAX95168.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
[Oryza sativa Japonica Group]
gi|77549578|gb|ABA92375.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|222615796|gb|EEE51928.1| hypothetical protein OsJ_33542 [Oryza sativa Japonica Group]
Length = 465
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 97/200 (48%), Gaps = 5/200 (2%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K+ G+ + S+ LFVGN+ +E +++ ++ G GV NI + D+ +
Sbjct: 168 KEHKGRTLRCSLSQAKHRLFVGNVPKGLGEEELRKIIQGKG-PGVVNIEMFKDLHDPSRN 226
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL-REPDPEIMAHVKTVFL 133
RGF FV + H A A ++L P+ + T V++AEP A VKT+++
Sbjct: 227 RGFLFVEYYNHACADYARQKLSAPNFKVDGSQLT--VSWAEPKGSSDSSSAAAQVKTIYV 284
Query: 134 DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
+P + + +I++ + +G+V ++VL KR D+GF+ F+ +A+ +
Sbjct: 285 KNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKR-DFGFVHFAERSSALKAVKGSEKY 343
Query: 194 EFSDGNSKVKLRARLSNPMP 213
EF+ +V + L + P
Sbjct: 344 EFNGQVLEVSMAKPLGDKKP 363
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
VF+ G+P E +R+ +G++ + L ++ T + K + F++F+ EAA I +
Sbjct: 106 VFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAFVNFTAKEAAQRAIEEL 165
Query: 191 NNKE 194
++KE
Sbjct: 166 HDKE 169
>gi|149610013|ref|XP_001505770.1| PREDICTED: RNA-binding protein 47 isoform 2 [Ornithorhynchus
anatinus]
Length = 522
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 101/213 (47%), Gaps = 21/213 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 144 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAADKMKNRGFA 202
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 203 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 259
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I+ K +G + R K +DY F+ F + E AV +N++N E +
Sbjct: 260 IETTEEAIK---KSFGQFNPGCVER---VKKIRDYAFVHFVSREDAVRAMNSLNGTEL-E 312
Query: 198 GNSKVKLRARLSNPMPKTQ------AVKGGMSG 224
G+ L L+ P+ K Q A KGG +
Sbjct: 313 GSC---LEVTLAKPVDKEQYTRYQKAAKGGAAS 342
>gi|344279159|ref|XP_003411358.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Loxodonta
africana]
Length = 593
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 138 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 196
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 197 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 253
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 254 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 306
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 307 GSC---LEVTLAKPVDKEQ 322
>gi|348571796|ref|XP_003471681.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Cavia porcellus]
Length = 523
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 21/210 (10%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVQAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ------AVKGG 221
G+ L L+ P+ K Q A KGG
Sbjct: 308 GSC---LEVTLAKPVDKEQYSRYQKAAKGG 334
>gi|332219030|ref|XP_003258661.1| PREDICTED: RNA-binding protein 47 isoform 3 [Nomascus leucogenys]
Length = 555
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 101 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 159
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 160 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 216
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 217 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 269
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 270 GSC---LEVTLAKPVDKEQ 285
>gi|195997511|ref|XP_002108624.1| hypothetical protein TRIADDRAFT_689 [Trichoplax adhaerens]
gi|190589400|gb|EDV29422.1| hypothetical protein TRIADDRAFT_689, partial [Trichoplax adhaerens]
Length = 299
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 18/196 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I T +E I+ ++ E V ++ + + +RGFA
Sbjct: 115 GRMIGVCSSVDNCRLFIGGIPKTIKREEIRSEMAKI-TEHVVDVIVYPSASDKTKNRGFA 173
Query: 79 FVMFSCHVDAMAAYKRLQKPDVV--FGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FV ++ H A A ++L + V +GH + V +AEP E D EIM VK V++ +
Sbjct: 174 FVEYTNHRAAAMARRKLMNNNNVELWGH---KIAVDWAEPEIEVDEEIMDQVKIVYVRNL 230
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E +R+ + V R+ K +DY FI F++ E A I + N +
Sbjct: 231 LLSTTEESLREIFQSIARVERV--------KKIRDYAFIHFTSKEDAHMAI-TLKNGQII 281
Query: 197 DGNSKVKLRARLSNPM 212
DG++ + L+ P+
Sbjct: 282 DGST---VEVTLAKPV 294
>gi|321468659|gb|EFX79643.1| hypothetical protein DAPPUDRAFT_319432 [Daphnia pulex]
Length = 695
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 13/192 (6%)
Query: 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAM 89
N LFVGNI + I ++ G+ + + S +RGF F+ + H A
Sbjct: 255 NLRLFVGNIPKSKGNVEIMEEFSKV-TAGLAEVIIYSSPDDRRKNRGFCFLEYDSHKSAS 313
Query: 90 AAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQ 148
A +RL V +FG + V +A+P EPD + M+ VK +++ + + E ++++
Sbjct: 314 LAKRRLSTGRVKIFGC---DIIVDWADPQEEPDNDTMSRVKVLYVRNLTQEFTEEKLKEA 370
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 208
+ +G + R+ K KDY F+ F + AV ++A+N N +V L
Sbjct: 371 FEAHGPIQRV--------KKIKDYAFVHFEERDDAVQAMDALNGHTLYGANLEVSLAKPP 422
Query: 209 SNPMPKTQAVKG 220
S+ K + +K
Sbjct: 423 SDRKKKEEILKA 434
>gi|255578218|ref|XP_002529977.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223530539|gb|EEF32420.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 557
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 79/144 (54%), Gaps = 4/144 (2%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K+ GK + SE + LFVGN+ WT++ ++ +++ G GV+ I L+ D Q+ +
Sbjct: 173 KEFKGKTLRCSLSETKNRLFVGNVPKNWTEDEFRKVVEEVG-PGVDIIELIRDPQNPSRN 231
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE-IMAHVKTVFL 133
RGFAFV++ + +A A Y R + + F T V++A+P PD A VK +++
Sbjct: 232 RGFAFVLY--YNNACADYSRQKMLNANFKLEGNTPTVSWADPKGTPDQSAAAAQVKALYV 289
Query: 134 DGVPPHWKENQIRDQIKGYGDVIR 157
+P + Q+++ + +G+ +R
Sbjct: 290 KNIPENTSTEQLKELFQRHGEAVR 313
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 186
H VF+ G+P E+ +RD + GD+ I L ++ T + K + F+ F + E A
Sbjct: 107 HGSEVFIGGLPKDALEDDLRDLCEPIGDIFEIRLMKDKDTGESKGFAFVAFRSKEVAQKA 166
Query: 187 INAINNKEF 195
I I++KEF
Sbjct: 167 IEEIHSKEF 175
>gi|324505135|gb|ADY42212.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 609
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 13/177 (7%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS--DIQHEGLS 74
+ GK S N LF+GNI + +KE I + K++ EGV + + S D +
Sbjct: 253 LPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPDAGESRKN 311
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 134
RGF F+ F H A A +++ + + + V +AE EPD E MA VK +++
Sbjct: 312 RGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVD--WAEQQEEPDEETMAKVKVLYVR 369
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191
+ E Q+++ +G+V + K KDY FI F+ E AV + A+N
Sbjct: 370 NLKEAVTEEQLKEMFSAHGEVDHV--------KKIKDYAFIHFNEREPAVKAMEALN 418
>gi|413926094|gb|AFW66026.1| heterogeneous nuclear ribonucleoprotein A3 [Zea mays]
Length = 443
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 9/171 (5%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG + T+E+ + + YG + + ++ D +H + RGF FV FS D
Sbjct: 116 IFVGGVAWETTEESFSKHFEKYGA--ITDSVIMKD-KHTKMPRGFGFVTFS---DPSVID 169
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
K L+ V+ G RTV+V P E + + +F+ G+PP E++++D Y
Sbjct: 170 KVLEDDHVIDG---RTVEVKRTVPREEMITKDGPKTRKIFIGGLPPSLTEDELKDHFSSY 226
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203
G+V+ + + ST + + +GFI F + ++ I+ ++ ++K
Sbjct: 227 GNVVEHQIMLDHSTGRSRGFGFITFESEDSVERVISEGRMRDLGGKQVEIK 277
>gi|296196676|ref|XP_002745942.1| PREDICTED: RNA-binding protein 47 isoform 1 [Callithrix jacchus]
Length = 594
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|350587465|ref|XP_003128987.3| PREDICTED: RNA-binding protein 47-like isoform 1 [Sus scrofa]
Length = 591
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|351715567|gb|EHB18486.1| APOBEC1 complementation factor [Heterocephalus glaber]
Length = 588
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 91/202 (45%), Gaps = 22/202 (10%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFIGGIPKTKKREEILSEVKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I + N + DY F+ FS E AV + A+N K D
Sbjct: 240 LSTSEEIIEREF-------------NNIKPEIWDYAFVHFSKREDAVEAMKALNGKVL-D 285
Query: 198 GNSKVKLRARLSNPMPKTQAVK 219
G+ + L+ P+ K V+
Sbjct: 286 GSP---IEVTLAKPVDKDSYVR 304
>gi|239051430|ref|NP_001131946.2| uncharacterized protein LOC100193339 [Zea mays]
gi|194695014|gb|ACF81591.1| unknown [Zea mays]
gi|223947685|gb|ACN27926.1| unknown [Zea mays]
gi|238908636|gb|ACF80580.2| unknown [Zea mays]
gi|413926096|gb|AFW66028.1| heterogeneous nuclear ribonucleoprotein A3 isoform 1 [Zea mays]
gi|413926097|gb|AFW66029.1| heterogeneous nuclear ribonucleoprotein A3 isoform 2 [Zea mays]
gi|413926098|gb|AFW66030.1| heterogeneous nuclear ribonucleoprotein A3 isoform 3 [Zea mays]
Length = 384
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 86/173 (49%), Gaps = 11/173 (6%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG + T+E+ + + YG + + ++ D +H + RGF FV FS D
Sbjct: 57 IFVGGVAWETTEESFSKHFEKYGA--ITDSVIMKD-KHTKMPRGFGFVTFS---DPSVID 110
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
K L+ V+ G RTV+V P E + + +F+ G+PP E++++D Y
Sbjct: 111 KVLEDDHVIDG---RTVEVKRTVPREEMITKDGPKTRKIFIGGLPPSLTEDELKDHFSSY 167
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
G+V+ + + ST + + +GFI F + ++ I+ ++ G +V+++
Sbjct: 168 GNVVEHQIMLDHSTGRSRGFGFITFESEDSVERVISEGRMRDL--GGKQVEIK 218
>gi|405972362|gb|EKC37135.1| Heterogeneous nuclear ribonucleoprotein Q [Crassostrea gigas]
Length = 628
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 16/194 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGL-SRGF 77
GK S N LFVGNI + +K+ I ++ EG+ ++ + + E +RGF
Sbjct: 226 GKNIKVNISVANQRLFVGNIPKSKSKDEIMEEFSKK-TEGLVDVIIYRSAEKENQKNRGF 284
Query: 78 AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
AF+ + H A A ++L + + + V V +A+P+ PD E M+ VK +++ +
Sbjct: 285 AFLEYDSHKSASTAKRKLSTGRLKVWNCD--VIVDWADPVDNPDDETMSKVKVLYVRNLT 342
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ ++++ +G + R K KDYGFI F + A+ + A+N ++
Sbjct: 343 SEVTEDIMKEKFGEFGKIER--------AKKVKDYGFIHFEDRDDAIKAMQAMNGQKI-- 392
Query: 198 GNSKVKLRARLSNP 211
K+++ L+ P
Sbjct: 393 --GKLEIEVSLAKP 404
>gi|324502274|gb|ADY41001.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324504680|gb|ADY42019.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508493|gb|ADY43584.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508971|gb|ADY43783.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 621
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 13/177 (7%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS--DIQHEGLS 74
+ GK S N LF+GNI + +KE I + K++ EGV + + S D +
Sbjct: 265 LPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPDAGESRKN 323
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 134
RGF F+ F H A A +++ + + + V +AE EPD E MA VK +++
Sbjct: 324 RGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVD--WAEQQEEPDEETMAKVKVLYVR 381
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191
+ E Q+++ +G+V + K KDY FI F+ E AV + A+N
Sbjct: 382 NLKEAVTEEQLKEMFSAHGEVDHV--------KKIKDYAFIHFNEREPAVKAMEALN 430
>gi|160017954|sp|Q5R5P4.2|RBM47_PONAB RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|148833513|ref|NP_001092104.1| RNA-binding protein 47 isoform a [Homo sapiens]
gi|313104167|sp|A0AV96.2|RBM47_HUMAN RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|109074059|ref|XP_001095125.1| PREDICTED: RNA-binding protein 47 isoform 5 [Macaca mulatta]
gi|109074063|ref|XP_001095351.1| PREDICTED: RNA-binding protein 47 isoform 7 [Macaca mulatta]
gi|114593726|ref|XP_001145550.1| PREDICTED: RNA-binding protein 47 isoform 13 [Pan troglodytes]
gi|402869216|ref|XP_003898662.1| PREDICTED: RNA-binding protein 47 isoform 1 [Papio anubis]
gi|402869218|ref|XP_003898663.1| PREDICTED: RNA-binding protein 47 isoform 2 [Papio anubis]
gi|410038246|ref|XP_003950365.1| PREDICTED: RNA-binding protein 47 [Pan troglodytes]
gi|426344160|ref|XP_004038643.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gorilla gorilla
gorilla]
gi|426344162|ref|XP_004038644.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gorilla gorilla
gorilla]
gi|116496675|gb|AAI26262.1| RBM47 protein [Homo sapiens]
gi|313883194|gb|ADR83083.1| RNA binding motif protein 47 (RBM47), transcript variant 1
[synthetic construct]
gi|355687243|gb|EHH25827.1| RNA-binding motif protein 47 [Macaca mulatta]
gi|355749234|gb|EHH53633.1| RNA-binding motif protein 47 [Macaca fascicularis]
Length = 593
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|224136798|ref|XP_002322418.1| predicted protein [Populus trichocarpa]
gi|222869414|gb|EEF06545.1| predicted protein [Populus trichocarpa]
Length = 716
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 123 EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA 182
++ HV TV + G+ W ++++ K YG++I ++L RN AK KD+GFI FS+H++
Sbjct: 350 QLEIHVTTVHVKGLVKSWNVKKLKELCKQYGEIINVLLPRNFG-AKHKDFGFIAFSSHKS 408
Query: 183 AVACINAINNKEFSDGNSKVKLRARLS 209
AVAC+ IN + + ++ K++A L+
Sbjct: 409 AVACVEGINKTQLGE-ETQTKVKADLA 434
>gi|397524560|ref|XP_003832258.1| PREDICTED: RNA-binding protein 47 isoform 1 [Pan paniscus]
gi|397524562|ref|XP_003832259.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan paniscus]
Length = 593
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|54312090|ref|NP_001005882.1| RNA-binding protein 47 [Rattus norvegicus]
gi|81910667|sp|Q66H68.1|RBM47_RAT RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|51859195|gb|AAH81995.1| Hypothetical RNA binding protein RGD1359713 [Rattus norvegicus]
gi|149035343|gb|EDL90047.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
gi|149035344|gb|EDL90048.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
Length = 590
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 25/228 (10%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I + I +++ EGV N+ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMQTVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + G V R+ K +DY F+ F++ E AV +N +N E
Sbjct: 255 IETTEETIKRSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNNLNGTEL 306
Query: 196 SDGNSKVKLRARLSNPMPKTQ------AVKGGMSGGFRIGHGSSRTFS 237
+G+ L L+ P+ K Q A KGG + S +S
Sbjct: 307 -EGSC---LEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYS 350
>gi|20450941|gb|AAM21973.1| RNA-binding protein [Homo sapiens]
Length = 593
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|197099430|ref|NP_001127604.1| RNA-binding protein 47 [Pongo abelii]
gi|55732443|emb|CAH92922.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|432844963|ref|XP_004065796.1| PREDICTED: RNA-binding protein 47-like [Oryzias latipes]
Length = 602
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 19/210 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I T +E I +++ EGV ++ + + + +RGFA
Sbjct: 151 GRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKV-TEGVLDVIVYASAADKMKNRGFA 209
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 210 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 266
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E IR + G V R+ K +DY F+ F++ + AV ++ +N E
Sbjct: 267 METNEETIRQIFSQWNPGCVERV--------KKIRDYAFVHFTSRDDAVLAMDNLNGTEI 318
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGG 225
+V L+ P+ K Q + S G
Sbjct: 319 EGSCIEVT----LAKPVDKEQYSRQKASKG 344
>gi|329664912|ref|NP_001192963.1| RNA-binding protein 47 [Bos taurus]
gi|296486627|tpg|DAA28740.1| TPA: RNA binding motif protein 47 [Bos taurus]
gi|440900817|gb|ELR51867.1| RNA-binding protein 47 [Bos grunniens mutus]
Length = 591
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|207080144|ref|NP_001128783.1| DKFZP469N2326 protein [Pongo abelii]
gi|55727921|emb|CAH90713.1| hypothetical protein [Pongo abelii]
Length = 550
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 96 GRLLGACCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 154
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 155 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 211
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 212 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 264
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 265 GSC---LEVTLAKPVDKEQ 280
>gi|238007140|gb|ACR34605.1| unknown [Zea mays]
gi|413926095|gb|AFW66027.1| hypothetical protein ZEAMMB73_185087 [Zea mays]
Length = 366
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG + T+E+ + + YG + + ++ D +H + RGF FV FS D
Sbjct: 39 IFVGGVAWETTEESFSKHFEKYGA--ITDSVIMKD-KHTKMPRGFGFVTFS---DPSVID 92
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
K L+ V+ G RTV+V P E + + +F+ G+PP E++++D Y
Sbjct: 93 KVLEDDHVIDG---RTVEVKRTVPREEMITKDGPKTRKIFIGGLPPSLTEDELKDHFSSY 149
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188
G+V+ + + ST + + +GFI F + ++ I+
Sbjct: 150 GNVVEHQIMLDHSTGRSRGFGFITFESEDSVERVIS 185
>gi|50346315|gb|AAT74916.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 595
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 19/205 (9%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
G+ G S DN LF G I T +E I ++K EGV ++ + + +RGF
Sbjct: 123 TGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGF 181
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
AFV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 182 AFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNL 238
Query: 137 PPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 239 MLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKV 290
Query: 195 FSDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 291 L-DGSP---IEVTLAKPVDKDSYVR 311
>gi|125533975|gb|EAY80523.1| hypothetical protein OsI_35702 [Oryza sativa Indica Group]
Length = 468
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 7/194 (3%)
Query: 21 RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
RC S+ LFVGN+ +E +++ ++ G GV NI + D+ +RGF FV
Sbjct: 179 RCSL--SQAKHRLFVGNVPKGLGEEELRKIIQGKG-PGVVNIEMFKDLHDPSRNRGFLFV 235
Query: 81 MFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL-REPDPEIMAHVKTVFLDGVPPH 139
+ H A A ++L P+ + T V++AEP A VKT+++ +P +
Sbjct: 236 EYYNHACADYARQKLSAPNFKVDGSQLT--VSWAEPKGSSDSSSAAAQVKTIYVKNLPEN 293
Query: 140 WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 199
+ +I++ + +G+V ++VL KR D+GF+ F+ +A+ + EF
Sbjct: 294 ASKEKIKEIFEKHGEVTKVVLPPAKDGHKR-DFGFVHFAERSSALKAVKGSEKYEFDGQV 352
Query: 200 SKVKLRARLSNPMP 213
+V + L + P
Sbjct: 353 LEVSMAKPLGDKKP 366
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
VF+ G+P E +R+ +G++ + L ++ T + K + F++F+ +AA I +
Sbjct: 109 VFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAFVNFTAKDAAQRAIEEL 168
Query: 191 NNKE 194
++KE
Sbjct: 169 HDKE 172
>gi|50346317|gb|AAT74917.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 587
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 19/205 (9%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
G+ G S DN LF G I T +E I ++K EGV ++ + + +RGF
Sbjct: 123 TGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGF 181
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
AFV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 182 AFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNL 238
Query: 137 PPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 239 MLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKV 290
Query: 195 FSDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 291 L-DGSP---IEVTLAKPVDKDSYVR 311
>gi|224049976|ref|XP_002187774.1| PREDICTED: RNA-binding protein 47 isoform 1 [Taeniopygia guttata]
Length = 594
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 19/201 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E+ I+ + G V R+ K +DY F+ F+T E A+ +N +N E
Sbjct: 255 IETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTTREDAIHAMNNLNGVEL 306
Query: 196 SDGNSKVKLRARLSNPMPKTQ 216
+G+ L L+ P+ K Q
Sbjct: 307 -EGSC---LEVTLAKPVDKEQ 323
>gi|255565651|ref|XP_002523815.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223536903|gb|EEF38541.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 489
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 102/200 (51%), Gaps = 9/200 (4%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GKR + ++ LF+GNI +W +E +++ + + G GV + LV D++ ++GFA
Sbjct: 181 GKRIKCSTAQAKYRLFLGNIPRSWKEEDLRKVVAEVG-PGVTAVQLVKDMKTSN-NKGFA 238
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
F+ + A + +++ PD G TV ++AEP + D + VK +++ +P
Sbjct: 239 FIDYYNTACAEYSRQKMVNPDFKLGDNAPTV--SWAEP-KNADSSASSQVKAIYVKNLPK 295
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198
+ ++Q++ + +G + ++VL ++ GF+ F+ +A + A+ N E +
Sbjct: 296 NVTQDQLKKLFEHHGKITKVVLPPAKPGQEKNRIGFVHFAERSSA---MKALKNTERYEL 352
Query: 199 NSKVKLRARLSNPMPKTQAV 218
+ +V + L+ P ++V
Sbjct: 353 DGQV-VECSLAKPQADQKSV 371
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 123 EIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 179
E++A H V++ G+P E +R + G+V + L + + + K + F+ F +
Sbjct: 104 ELLARPPHGSEVYIGGIPHDASEEDLRGFCESVGEVTEVRLMKGKDSNENKRFAFVTFRS 163
Query: 180 HEAAVACINAINNKEF 195
+ A I+ +NN EF
Sbjct: 164 VDLASKAIDELNNTEF 179
>gi|332219026|ref|XP_003258659.1| PREDICTED: RNA-binding protein 47 isoform 1 [Nomascus leucogenys]
gi|441663629|ref|XP_004091690.1| PREDICTED: RNA-binding protein 47 [Nomascus leucogenys]
Length = 593
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|326919263|ref|XP_003205901.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Meleagris
gallopavo]
Length = 598
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 19/201 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E+ I+ + G V R+ K +DY F+ F+T E A+ +N +N E
Sbjct: 255 IETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTTREDAIHAMNNLNGVEL 306
Query: 196 SDGNSKVKLRARLSNPMPKTQ 216
+G+ L L+ P+ K Q
Sbjct: 307 -EGSC---LEVTLAKPVDKEQ 323
>gi|74216343|dbj|BAE25115.1| unnamed protein product [Mus musculus]
Length = 377
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 25/228 (10%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I + I +++ EGV N+ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMQTVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + G V R+ K +DY F+ F++ E AV +N +N E
Sbjct: 255 IETTEETIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNNLNGTEL 306
Query: 196 SDGNSKVKLRARLSNPMPKTQ------AVKGGMSGGFRIGHGSSRTFS 237
+G+ L L+ P+ K Q A KGG + S +S
Sbjct: 307 -EGSC---LEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYS 350
>gi|395542863|ref|XP_003773344.1| PREDICTED: RNA-binding protein 47 isoform 1 [Sarcophilus harrisii]
Length = 590
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I+ K +G + R K +DY F+ F++ + AV +N++N E +
Sbjct: 255 IETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSRDDAVHAMNSLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|355694936|gb|AER99836.1| heteroproteinous nuclear ribonucleoprotein R [Mustela putorius
furo]
Length = 363
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 12/139 (8%)
Query: 56 VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFA 114
EG+ ++ L + +RGF F+ + H A A +RL V V+G+ V V +A
Sbjct: 1 TEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWA 57
Query: 115 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 174
+P+ EPDPE+MA VK +F+ + E + +G + R+ K KDY F
Sbjct: 58 DPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAF 109
Query: 175 IDFSTHEAAVACINAINNK 193
+ F AAV ++ +N K
Sbjct: 110 VHFEDRGAAVKAMDEMNGK 128
>gi|324511732|gb|ADY44878.1| Heterogeneous nuclear ribonucleoprotein Q, partial [Ascaris suum]
Length = 561
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 13/175 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS--DIQHEGLSRG 76
GK S N LF+GNI + +KE I + K++ EGV + + S D +RG
Sbjct: 267 GKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPDAGESRKNRG 325
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F F+ F H A A +++ + + + V +AE EPD E MA VK +++ +
Sbjct: 326 FCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVD--WAEQQEEPDEETMAKVKVLYVRNL 383
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191
E Q+++ +G+V + K KDY FI F+ E AV + A+N
Sbjct: 384 KEAVTEEQLKEMFSAHGEVDHV--------KKIKDYAFIHFNEREPAVKAMEALN 430
>gi|255578939|ref|XP_002530322.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223530126|gb|EEF32038.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 481
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 117/252 (46%), Gaps = 31/252 (12%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G++ + S+ N LF+GN+ W ++ + Q + G GV ++ L+ D Q+ +RGFA
Sbjct: 178 GRKIKCSTSQANHRLFLGNVPRDWEEKDMMQVVMKIG-PGVISVELLKDPQNSSRNRGFA 236
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
F+ + H A A Y R + + F + V++A+P + + VK V++ +P
Sbjct: 237 FIEYYNH--ACADYSRKKMSNPQFKLDDNAPTVSWADP-KNAGSSAASQVKAVYVKNLPH 293
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198
++++R + +G V ++V+ + +R + F+ F+ +A + A+ N E +
Sbjct: 294 DITQDRLRQLFERHGKVTKVVVPPAKAGHERSRFAFVHFAERSSA---MKALKNTEKYEI 350
Query: 199 NSKVKLRARLSNPMPKTQAVKG------------------GMSGGF--RIGHGSSRTFSR 238
+ +V L L+ P ++ G G+ GG +G G +F++
Sbjct: 351 DGQV-LECSLAKPQADQKSSGGSNLQKSVLHPTFPPRLGYGLVGGTYGALGAGYGASFAQ 409
Query: 239 ---YGRGSGRAG 247
YGRG AG
Sbjct: 410 PMIYGRGPTPAG 421
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 123 EIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 179
E++A H V+L G+P E +R + G+V + + + +++ K Y F+ F +
Sbjct: 101 ELLALPPHGSEVYLGGIPIDASEQDLRHFCESIGEVTEVRIMKGKASSDTKGYAFVTFRS 160
Query: 180 HEAAVACINAINNKEFSD-----GNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHG 231
E A I +NN EF S+ R L N +P+ K M +IG G
Sbjct: 161 KELASKAIEQLNNTEFKGRKIKCSTSQANHRLFLGN-VPRDWEEKDMMQVVMKIGPG 216
>gi|431893805|gb|ELK03622.1| RNA-binding protein 47 [Pteropus alecto]
Length = 578
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 19/201 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 130 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 188
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 189 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 245
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E+ I+ + G V R+ K +DY F+ F++ E AV +N +N E
Sbjct: 246 IETTEDTIKKIFGQFNPGCVERV--------KKIRDYAFVHFASREDAVHAMNNLNGTEL 297
Query: 196 SDGNSKVKLRARLSNPMPKTQ 216
+G+ L L+ P+ K Q
Sbjct: 298 -EGSC---LEVTLAKPVDKEQ 314
>gi|363733760|ref|XP_003641292.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gallus gallus]
Length = 597
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 19/201 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E+ I+ + G V R+ K +DY F+ F+T E A+ +N +N E
Sbjct: 255 IETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTTREDAIHAMNNLNGVEL 306
Query: 196 SDGNSKVKLRARLSNPMPKTQ 216
+G+ L L+ P+ K Q
Sbjct: 307 -EGSC---LEVTLAKPVDKEQ 323
>gi|195628644|gb|ACG36152.1| heterogeneous nuclear ribonucleoprotein A3 [Zea mays]
Length = 384
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 86/173 (49%), Gaps = 11/173 (6%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG + T+E+ + + YG + + ++ D +H + RGF FV FS D
Sbjct: 57 IFVGGVAWETTEESFSKHFEKYGA--ITDSVIMKD-KHTKMPRGFGFVTFS---DPSVID 110
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
K L+ V+ G RTV+V P E + + +F+ G+PP E++++D Y
Sbjct: 111 KVLEDDHVIDG---RTVEVKRTVPREEMITKDGPKTRKIFIGGLPPSLTEDELKDHFSSY 167
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
G+V+ + + ST + + +GF+ F + ++ I+ ++ G +V+++
Sbjct: 168 GNVVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDL--GGKQVEIK 218
>gi|417410140|gb|JAA51547.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 369
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 12/139 (8%)
Query: 56 VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFA 114
EG+ ++ L + +RGF F+ + H A A +RL V V+G+ V V +A
Sbjct: 6 TEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWA 62
Query: 115 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 174
+P+ EPDPE+MA VK +F+ + E + +G + R+ K KDY F
Sbjct: 63 DPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAF 114
Query: 175 IDFSTHEAAVACINAINNK 193
+ F AAV ++ +N K
Sbjct: 115 VHFEDRGAAVKAMDEMNGK 133
>gi|413921449|gb|AFW61381.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 465
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 97/201 (48%), Gaps = 9/201 (4%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GL 73
++ G+ + S+ LFVGN+ ++E + +K G GV NI + +H+
Sbjct: 169 REFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKGKG-PGVINIEM---FKHDPNR 224
Query: 74 SRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE-IMAHVKTVF 132
+RGF FV + H A A ++L P+ + TV ++AEP D A VKT++
Sbjct: 225 NRGFLFVEYYNHACADYARQKLSSPNFKVDGSQLTV--SWAEPKGSTDASSAAAQVKTIY 282
Query: 133 LDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 192
+ +P + + +I+D +G+V +IVL + KR D+GF+ F+ +A+ +
Sbjct: 283 VKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKGSEK 341
Query: 193 KEFSDGNSKVKLRARLSNPMP 213
E +V + L++ P
Sbjct: 342 YEIDGQVLEVSMAKPLADKKP 362
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 98 PDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR 157
PDV G PE + + + + P H VF+ G+P E +R+ + G++
Sbjct: 78 PDVAGGGPEDEEERSKWDDMLALPP----HGSEVFIGGLPRDITEEDLRELCEPLGEIYE 133
Query: 158 IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ L ++ T + K + F+ F EAA I + ++EF
Sbjct: 134 VRLTKDKDTKENKGFAFVTFMDKEAAQRAIEDVQDREF 171
>gi|345319914|ref|XP_001518200.2| PREDICTED: probable RNA-binding protein 46, partial
[Ornithorhynchus anatinus]
Length = 547
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K+ EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKNV-TEGVVDVIVYPSATDKSKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F + A+ ++ +N K +
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNRDDAMTAMSVMNGK-Y 295
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG + L+ P+ K + ++G
Sbjct: 296 IDGAG---IEVTLAKPVNKENTWRQHLNG 321
>gi|324501089|gb|ADY40490.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 418
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 13/164 (7%)
Query: 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS--DIQHEGLSRGFAFVMFSCHVD 87
N LF+GNI + +KE I + K++ EGV + + S D +RGF F+ F H
Sbjct: 19 NTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPDAGESRKNRGFCFLDFCDHKS 77
Query: 88 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRD 147
A A +++ + + + V +AE EPD E MA VK +++ + E Q+++
Sbjct: 78 ASDAKRKIHAGKLRAWNLDLVVD--WAEQQEEPDEETMAKVKVLYVRNLKEAVTEEQLKE 135
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191
+G+V + K KDY FI F+ E AV + A+N
Sbjct: 136 MFSAHGEVDHV--------KKIKDYAFIHFNEREPAVKAMEALN 171
>gi|167963512|ref|NP_001108158.1| RNA-binding protein 47 [Danio rerio]
Length = 600
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 19/201 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I T +E I +++ EGV ++ + + + +RGFA
Sbjct: 150 GRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKV-TEGVLDVIVYASAADKMKNRGFA 208
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 209 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 265
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E +R + G V R+ K +DY F+ F++ + AV ++ +N E
Sbjct: 266 IETSEEILRQTFGQFNPGCVERV--------KKIRDYAFVHFASRDDAVVAMDNLNGTEI 317
Query: 196 SDGNSKVKLRARLSNPMPKTQ 216
++ L+ P+ K Q
Sbjct: 318 EGS----RIEVTLAKPVDKEQ 334
>gi|50346319|gb|AAT74918.1| truncated APOBEC-1 stimulating protein [Mus musculus]
Length = 384
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 19/205 (9%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
G+ G S DN LF G I T +E I ++K EGV ++ + + +RGF
Sbjct: 123 TGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGF 181
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
AFV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 182 AFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNL 238
Query: 137 PPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 239 MLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKV 290
Query: 195 FSDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 291 L-DGSP---IEVTLAKPVDKDSYVR 311
>gi|55727108|emb|CAH90310.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYAGAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|126331701|ref|XP_001365615.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Monodelphis
domestica]
Length = 523
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I+ K +G + R K +DY F+ F++ E AV +N++N E +
Sbjct: 255 IETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNSLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|432926030|ref|XP_004080795.1| PREDICTED: APOBEC1 complementation factor-like [Oryzias latipes]
Length = 611
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 104/240 (43%), Gaps = 38/240 (15%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I ++ I ++K +GV ++ + + +RGFA
Sbjct: 125 GRLLGVCASVDNCRLFVGGIPKIKKRDEILTEMKKV-TDGVVDVIVYPSAADKSKNRGFA 183
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++G+P + V +AEP E D + MA VK +++ +
Sbjct: 184 FVEYESHRAAAMARRKLLPGRIQLWGYP---IAVDWAEPEVEVDDDTMATVKILYVRNLM 240
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ F E A+ +NA+N K
Sbjct: 241 LQTTEETIEREFNSLKPGAVERV--------KKIRDYAFVHFCQREDAINAMNALNGK-L 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF 255
+G+ + L+ P+ K ++ RY RG+G G + ++
Sbjct: 292 VEGSP---IEVTLAKPVDKD-------------------SYVRYTRGTGGRGSSLLQTDY 329
>gi|281342615|gb|EFB18199.1| hypothetical protein PANDA_019026 [Ailuropoda melanoleuca]
Length = 594
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F + E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFVSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|157132620|ref|XP_001656100.1| heterogeneous nuclear ribonucleoprotein r [Aedes aegypti]
gi|108881674|gb|EAT45899.1| AAEL002879-PA, partial [Aedes aegypti]
Length = 517
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 17/205 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 76
GK S N LFVGNI + KE I L ++G G+ + + S + +RG
Sbjct: 199 GKCLKINVSVPNLRLFVGNIPKSKGKEEI---LDEFGKLTAGLMEVIIYSSPDDKKKNRG 255
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 256 FCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRN 312
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E ++++ + +G V R+ K KDY FI F + AV + ++ K+
Sbjct: 313 LTQDTSEEKLKESFEQFGKVERV--------KKIKDYAFIHFEDRDHAVNAMKELDGKDL 364
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKG 220
N +V L S+ K + ++
Sbjct: 365 GGSNLEVSLAKPPSDKKKKEEILRA 389
>gi|301787079|ref|XP_002928955.1| PREDICTED: RNA-binding protein 47-like [Ailuropoda melanoleuca]
Length = 630
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 175 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 233
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 234 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 290
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F + E AV +N +N E +
Sbjct: 291 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFVSREDAVHAMNNLNGTEL-E 343
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 344 GSC---LEVTLAKPVDKEQ 359
>gi|224104859|ref|XP_002313595.1| predicted protein [Populus trichocarpa]
gi|222850003|gb|EEE87550.1| predicted protein [Populus trichocarpa]
Length = 489
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 113/249 (45%), Gaps = 11/249 (4%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK+ + S+ LF+ NI +W ++ +++ + + G GV N+ LV + + +RG+A
Sbjct: 177 GKKIKCSTSQAKHRLFLSNIPRSWGEDGLRKIVAEVG-PGVTNVQLVKE-KSSSNNRGYA 234
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
F+ + + +A A Y R + D F + V++A+P + D + VK +++ +P
Sbjct: 235 FIEY--YNNACAEYSRQKMMDPKFKLGDNAPAVSWADP-KNADSSASSQVKALYVKNLPK 291
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198
++Q++ + +G + ++VL S ++ GF+ F+ +A+ + E DG
Sbjct: 292 TVTQDQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKDTEKYEL-DG 350
Query: 199 NSKVKLRARLSNPMPKTQAVKGG--MSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ 256
+ L+ P + +A G + G G+ + G G G + A F
Sbjct: 351 Q---LVECALAKPQSEQKAAGGSNLQNTGLLPGYPPGVGYGMMGNAYGALGAGYVTAGFA 407
Query: 257 RGRGFYQHG 265
+ Y G
Sbjct: 408 QQPLIYGSG 416
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 123 EIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 179
E++A H V++ G+P E +RD + G+V + + R +++ + + F+ F +
Sbjct: 100 ELLARPPHGSEVYIGGIPNDASEEDLRDFCESVGEVTEVRIMREKDSSENRGFAFVTFRS 159
Query: 180 HEAAVACINAINNKEFSD-----GNSKVKLRARLSN 210
+ A I +NN EF S+ K R LSN
Sbjct: 160 VDLASTAIGELNNTEFKGKKIKCSTSQAKHRLFLSN 195
>gi|432109353|gb|ELK33614.1| RNA-binding protein 47 [Myotis davidii]
Length = 733
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 19/201 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 282 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAADKMKNRGFA 340
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 341 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 397
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E+ I+ + G V R+ K +DY F+ F++ E AV +N +N E
Sbjct: 398 IETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFASREDAVHAMNHLNGTEL 449
Query: 196 SDGNSKVKLRARLSNPMPKTQ 216
+G+ L L+ P+ K Q
Sbjct: 450 -EGSC---LEVTLAKPVDKEQ 466
>gi|410957713|ref|XP_003985469.1| PREDICTED: RNA-binding protein 47 isoform 1 [Felis catus]
Length = 589
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F + E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFVSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|334186262|ref|NP_001190647.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656542|gb|AEE81942.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 467
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 85/174 (48%), Gaps = 14/174 (8%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K+ GK + SE + LF+GNI WT++ ++ ++D G D + +
Sbjct: 160 KEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVG---------PGDPTNTTRN 210
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFL 133
RGFAFV++ + +A A Y R + D F V +A+P P+ A VK +++
Sbjct: 211 RGFAFVLY--YNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYV 268
Query: 134 DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
+P + Q+++ + +G+V +IV ++D+GF+ ++ +A+ +
Sbjct: 269 KNIPENTSTEQLKELFQRHGEVTKIVTPP--GKGGKRDFGFVHYAERSSALKAV 320
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 186
H VF+ G+P E +RD + G++ + L ++ + K Y F+ F T + A
Sbjct: 94 HGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 153
Query: 187 INAINNKEFSDGNSKVKL 204
I +++KEF + L
Sbjct: 154 IEELHSKEFKGKTIRCSL 171
>gi|410957715|ref|XP_003985470.1| PREDICTED: RNA-binding protein 47 isoform 2 [Felis catus]
Length = 626
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 176 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 234
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 235 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 291
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F + E AV +N +N E +
Sbjct: 292 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFVSREDAVHAMNNLNGTEL-E 344
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 345 GSC---LEVTLAKPVDKEQ 360
>gi|47230069|emb|CAG10483.1| unnamed protein product [Tetraodon nigroviridis]
Length = 621
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 87/209 (41%), Gaps = 44/209 (21%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 283 GKHIGVCISVANNRLFVGSIPKSKTKEQIIEEFSKV-TEGLNDVILYLQPVDKKKNRGFC 341
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMA----------- 126
F+ + H A A +RL V V+G+ V V +A+PL +PDPE+MA
Sbjct: 342 FLEYEDHKTAAQARRRLMSGKVKVWGN---LVTVEWADPLEDPDPEVMAKVRVGPRAPIV 398
Query: 127 --------------------HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST 166
VK +F+ + E + +G + R+
Sbjct: 399 CVLARIFFFFLPTLSLSGPLQVKVLFVRNLASSVTEELLEKAFSQFGKLERV-------- 450
Query: 167 AKRKDYGFIDFSTHEAAVACINAINNKEF 195
K KDY FI F + AV + +N K+
Sbjct: 451 KKLKDYAFIHFEERDGAVKALADLNGKDL 479
>gi|296196678|ref|XP_002745943.1| PREDICTED: RNA-binding protein 47 isoform 2 [Callithrix jacchus]
Length = 525
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|350587467|ref|XP_003482419.1| PREDICTED: RNA-binding protein 47-like [Sus scrofa]
Length = 522
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|344279161|ref|XP_003411359.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Loxodonta
africana]
Length = 524
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 138 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 196
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 197 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 253
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 254 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 306
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 307 GSC---LEVTLAKPVDKEQ 322
>gi|7020253|dbj|BAA91049.1| unnamed protein product [Homo sapiens]
Length = 524
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|118794756|ref|XP_321714.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|347965857|ref|XP_003435823.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|347965859|ref|XP_003435824.1| AGAP001419-PD [Anopheles gambiae str. PEST]
gi|116116446|gb|EAA43192.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|333470321|gb|EGK97588.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|333470323|gb|EGK97590.1| AGAP001419-PD [Anopheles gambiae str. PEST]
Length = 532
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 15/193 (7%)
Query: 30 NDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
N LFVGNI + KE I L ++G G+ + + S + +RGF F+ + H
Sbjct: 248 NLRLFVGNIPKSKGKEEI---LDEFGKLTAGLVEVIIYSSPDDKKKNRGFCFLEYESHKA 304
Query: 88 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRD 147
A A +RL + + + + V +A+P EPD + M+ VK +++ + E ++++
Sbjct: 305 ASLAKRRLGTGRIKVWNCD--IIVDWADPQEEPDEQTMSKVKVLYVRNLTQDTSEEKLKE 362
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 207
+ +G V R+ K KDY F+ F + AV + ++ KE N +V L
Sbjct: 363 SFEQFGRVERV--------KKIKDYAFVHFEDRDNAVKAMKDLDGKEVGGSNIEVSLAKP 414
Query: 208 LSNPMPKTQAVKG 220
S+ K + ++
Sbjct: 415 PSDKKKKEEILRA 427
>gi|213983189|ref|NP_001135499.1| RNA binding motif protein 47 [Xenopus (Silurana) tropicalis]
gi|195539941|gb|AAI67901.1| Unknown (protein for MGC:135580) [Xenopus (Silurana) tropicalis]
Length = 412
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 98/212 (46%), Gaps = 25/212 (11%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E+ I+ + G V R+ K +DY F+ FS+ E AV + +N E
Sbjct: 255 IETSEDTIKKIFGQFNPGCVERV--------KKIRDYAFVHFSSREDAVQSMRKLNGTEL 306
Query: 196 SDGNSKVKLRARLSNPMPKTQ------AVKGG 221
+V L+ P+ K Q A KGG
Sbjct: 307 EGSCIEVT----LAKPVDKEQYTRYQKAAKGG 334
>gi|148833511|ref|NP_061900.2| RNA-binding protein 47 isoform b [Homo sapiens]
Length = 524
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|109074069|ref|XP_001094904.1| PREDICTED: RNA-binding protein 47 isoform 3 [Macaca mulatta]
gi|114593728|ref|XP_001144637.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan troglodytes]
gi|402869220|ref|XP_003898664.1| PREDICTED: RNA-binding protein 47 isoform 3 [Papio anubis]
gi|426344166|ref|XP_004038646.1| PREDICTED: RNA-binding protein 47 isoform 4 [Gorilla gorilla
gorilla]
gi|119613373|gb|EAW92967.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
gi|119613375|gb|EAW92969.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
Length = 524
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|395542865|ref|XP_003773345.1| PREDICTED: RNA-binding protein 47 isoform 2 [Sarcophilus harrisii]
Length = 521
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 21/213 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I+ K +G + R K +DY F+ F++ + AV +N++N E +
Sbjct: 255 IETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSRDDAVHAMNSLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ------AVKGGMSG 224
G+ L L+ P+ K Q A KG ++
Sbjct: 308 GSC---LEVTLAKPVDKEQYTRYQKAAKGNVTA 337
>gi|332219028|ref|XP_003258660.1| PREDICTED: RNA-binding protein 47 isoform 2 [Nomascus leucogenys]
Length = 524
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|397524564|ref|XP_003832260.1| PREDICTED: RNA-binding protein 47 isoform 3 [Pan paniscus]
Length = 524
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
>gi|326919265|ref|XP_003205902.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Meleagris
gallopavo]
Length = 529
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 19/201 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E+ I+ + G V R+ K +DY F+ F+T E A+ +N +N E
Sbjct: 255 IETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTTREDAIHAMNNLNGVEL 306
Query: 196 SDGNSKVKLRARLSNPMPKTQ 216
+G+ L L+ P+ K Q
Sbjct: 307 -EGSC---LEVTLAKPVDKEQ 323
>gi|118090545|ref|XP_001232620.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gallus gallus]
Length = 528
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 19/201 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E+ I+ + G V R+ K +DY F+ F+T E A+ +N +N E
Sbjct: 255 IETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTTREDAIHAMNNLNGVEL 306
Query: 196 SDGNSKVKLRARLSNPMPKTQ 216
+G+ L L+ P+ K Q
Sbjct: 307 -EGSC---LEVTLAKPVDKEQ 323
>gi|156377726|ref|XP_001630797.1| predicted protein [Nematostella vectensis]
gi|156217825|gb|EDO38734.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 17/196 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ--HEGLSRG 76
G+R S N LFV I +KE I Q+ + + I S Q H L+RG
Sbjct: 179 GRRLAICKSRSNSRLFVKGIPKRKSKEEIFQEFSKVTTDLQDVIVYQSCDQGNHGDLNRG 238
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
F F+ ++ ++ +A R V ++G V +AE PD +M+ VK++++
Sbjct: 239 FVFLEYANYIAGASALHRFTDGKVRIWGKVLEAV--TWAEAREIPDYAVMSKVKSIYVRN 296
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
VP E Q++ YG + ++ K +DYGF+ F+ E+AV I+ IN +
Sbjct: 297 VPLPMSETQLKAVFTKYGQIEKV--------RKIRDYGFVYFAKRESAVQAIDGINGA-Y 347
Query: 196 SDGNSKVKLRARLSNP 211
DG KL L+ P
Sbjct: 348 IDG---CKLEVSLAIP 360
>gi|357603823|gb|EHJ63934.1| hypothetical protein KGM_17340 [Danaus plexippus]
Length = 438
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 101/241 (41%), Gaps = 27/241 (11%)
Query: 23 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 82
G S DN LFVGNI T TKE ++++L V + ++ L + L+RGFAFV F
Sbjct: 44 GVVKSVDNCRLFVGNIPKTKTKEDVREELSK-RVSDIVDVILYKNCFDRKLNRGFAFVEF 102
Query: 83 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKE 142
+CH A A + L V E V V +AEP + D E M VK +++
Sbjct: 103 TCHRAAAMARRALVPGCVRLWDQE--VMVDWAEPEPDIDDEQMQRVKVLYVRNF------ 154
Query: 143 NQIRDQIKGYGDVIRIVLARNMS-----TAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
+I+ DVI+ V ++ K DY FI F E A I + N +
Sbjct: 155 -----EIRTTPDVIQKVFESTINHKVERVKKIYDYAFIHFYEREHAELAIAKLQNADIDG 209
Query: 198 GNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQR 257
N +++ + + + Q + G + F ++T Y HH + +
Sbjct: 210 SNIEIRWAKPVDRDLYRIQKLSRG-NAKFNNSLDLTQTLLLY-------KHHIEKQEYAN 261
Query: 258 G 258
G
Sbjct: 262 G 262
>gi|74194008|dbj|BAE36923.1| unnamed protein product [Mus musculus]
Length = 368
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 12/148 (8%)
Query: 56 VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFA 114
EG+ ++ L + +RGF F+ + H A A +RL V V+G+ V +A
Sbjct: 12 TEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWA 68
Query: 115 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 174
+P+ +PDPE+MA VK +F+ + E + +G + R+ K KDY F
Sbjct: 69 DPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAF 120
Query: 175 IDFSTHEAAVACINAINNKEFSDGNSKV 202
I F + AV + +N K+ N ++
Sbjct: 121 IHFDERDGAVKAMEEMNGKDLEGENIEI 148
>gi|413915907|gb|AFW55839.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
gi|413915908|gb|AFW55840.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
Length = 492
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 105/237 (44%), Gaps = 7/237 (2%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K + GK+ + S+ + LF+GNI WT+ K+ ++ G GV +NLV H +
Sbjct: 156 KDLKGKKIRVSSSQAKNRLFIGNIPYNWTENEFKKAAEEVG-PGVLKVNLVK-APHSDTN 213
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 134
+G+ F+ + A A K + P+ F + V++A+ + A VK++++
Sbjct: 214 KGYGFIEYYNQACAEYAKKMMSTPE--FKLDKNAPNVSWADTKNGGESASTAQVKSLYVK 271
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+P + Q++ + G+V ++V+ + + + YGF+ F A+ + E
Sbjct: 272 NLPKAVTQEQLKKLFEHLGEVTKVVIPPAKAGHENR-YGFVHFKERSMAMKALEDTERFE 330
Query: 195 FSDGNSKVKLRARLSNPMPKTQAVKGG--MSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
L L++ T A KGG + +G+G ++ G G AG +
Sbjct: 331 LDGQLLDCSLAKPLADKKDDTSAPKGGPLLPSYTPVGYGLMGAYNPLGNGLAVAGAY 387
>gi|313212894|emb|CBY36802.1| unnamed protein product [Oikopleura dioica]
Length = 542
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 88/178 (49%), Gaps = 16/178 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I + ++ I +++K EGV ++ + + +RGF+
Sbjct: 143 GRLLGACQSVDNCRLFVGGIPKSKKRDEIMEEMKKV-TEGVVDVIVYPSAADKSKNRGFS 201
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP E + +M VK +++ +
Sbjct: 202 FVEYKDHKAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIEVEESVMETVKILYVRNLM 258
Query: 138 PHWKENQIRD---QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 192
H E+ + ++ G G + R+ K +DY F+ F+T + A+ + +NN
Sbjct: 259 LHTSEDTLEAAFAKVTGKGTIERV--------KKIRDYAFVHFNTRDNALKAMKELNN 308
>gi|339253564|ref|XP_003372005.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316967645|gb|EFV52050.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 2180
Score = 67.8 bits (164), Expect = 1e-08, Method: Composition-based stats.
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 14/183 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKL-KDYGVEGVENINLVSDIQH--EGLSR 75
GKR S N LFVGNI + KE I ++ K GV+ + ++ + S+ +R
Sbjct: 283 GKRLRVNVSVANTRLFVGNIPKSKGKEDIMEEFSKVSGVQNITDVIMYSNPNDPVNKKNR 342
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
GF F+ F+ H A A +RL F + V +AE + D E M+ VK ++L
Sbjct: 343 GFCFLEFADHKSASQAKRRLGSSR--FRPWMMELVVEWAETQDDVDKETMSKVKILYLRP 400
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ E ++R + YG V R+ + KDY F+ F+ E A I A+ +EF
Sbjct: 401 LKDSVSEEELRVRFSQYGTVERV--------KRIKDYAFVHFAEREQAEKAIEAMKGQEF 452
Query: 196 SDG 198
DG
Sbjct: 453 -DG 454
>gi|351713281|gb|EHB16200.1| RNA-binding protein 47 [Heterocephalus glaber]
Length = 585
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 25/210 (11%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I + EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKLKKREEIAKV-----TEGVLDVIMYASAADKMKNRGFA 193
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 194 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 250
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV ++ +N E +
Sbjct: 251 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMSNLNGTEL-E 303
Query: 198 GNSKVKLRARLSNPMPKTQ------AVKGG 221
G+ L L+ P+ K Q A KGG
Sbjct: 304 GSC---LEVTLAKPVDKEQYSRYQKAAKGG 330
>gi|115445085|ref|NP_001046322.1| Os02g0221500 [Oryza sativa Japonica Group]
gi|46806500|dbj|BAD17624.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
gi|46806519|dbj|BAD17632.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
gi|113535853|dbj|BAF08236.1| Os02g0221500 [Oryza sativa Japonica Group]
Length = 397
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 89/184 (48%), Gaps = 12/184 (6%)
Query: 23 GTAPSEDND-TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM 81
G AP D+ +FVG + T+E+ + + YG + + ++ D +H + RGF FV
Sbjct: 57 GRAPGGDSSGKIFVGGVAWETTEESFSKHFEKYGA--ITDSVIMKD-KHTKMPRGFGFVT 113
Query: 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 141
FS D K L+ V+ G RTV+V P E + + +F+ G+P
Sbjct: 114 FS---DPSVIDKVLEDEHVIDG---RTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSSLT 167
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201
E+++R+ YG ++ + + ST + + +GF+ F + ++ I+ ++ G +
Sbjct: 168 EDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDL--GGKQ 225
Query: 202 VKLR 205
V+++
Sbjct: 226 VEIK 229
>gi|115481176|ref|NP_001064181.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|18425248|gb|AAL69426.1|AC098565_8 Putative RNA-binding protein [Oryza sativa]
gi|31430199|gb|AAP52145.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113638790|dbj|BAF26095.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|125574047|gb|EAZ15331.1| hypothetical protein OsJ_30749 [Oryza sativa Japonica Group]
Length = 472
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 96/202 (47%), Gaps = 7/202 (3%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K+ G+ + S+ LFVGN+ +++ ++ ++ G GV NI + D+ +
Sbjct: 173 KEHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELRNIIQGKG-PGVVNIEMFKDLHDPSRN 231
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP---LREPDPEIMAHVKTV 131
RGF FV + H A A ++L P+ + T V++AEP A VKT+
Sbjct: 232 RGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLT--VSWAEPKGSSSSDSSSAAAQVKTI 289
Query: 132 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191
++ +P + + +I++ + +G+V ++VL + KR D+GF+ F+ +A+ +
Sbjct: 290 YVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKR-DFGFVHFAERSSALKAVKGSE 348
Query: 192 NKEFSDGNSKVKLRARLSNPMP 213
E +V + L + P
Sbjct: 349 KYEIDGQVLEVSMAKPLGDKKP 370
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 35/64 (54%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
VF+ G+P E+ + + + +G++ + L ++ T + K + F+ F+ + A I +
Sbjct: 111 VFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKGFAFVTFTGKDGAQRAIEDL 170
Query: 191 NNKE 194
++KE
Sbjct: 171 HDKE 174
>gi|218184150|gb|EEC66577.1| hypothetical protein OsI_32766 [Oryza sativa Indica Group]
Length = 496
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 98/201 (48%), Gaps = 11/201 (5%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K+ G+ + S+ LFVGN+ +++ ++ ++ G GV NI + D+ +
Sbjct: 173 KEHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELRNIIQGKG-PGVVNIEMFKDLHDPSRN 231
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP---LREPDPEIMAHVKTV 131
RGF FV + H A A ++L P+ + T V++AEP A VKT+
Sbjct: 232 RGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLT--VSWAEPKGSSSSDSSSAAAQVKTI 289
Query: 132 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191
++ +P + + +I++ + +G+V ++VL + KR D+GF+ F+ +A+ + N
Sbjct: 290 YVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKR-DFGFVHFAERSSALKAVKG-N 347
Query: 192 NKEFSDGNSKVKLRARLSNPM 212
K DG L ++ P+
Sbjct: 348 EKYEIDGQV---LEVSMAKPL 365
>gi|417403083|gb|JAA48365.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 590
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 25/212 (11%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E+ I+ + G V R+ K +DY F+ F++ E AV + +N +
Sbjct: 255 METTEDTIKKIFGQFNPGCVERV--------KKIRDYAFVHFASREDAVHAMKKLNGTDL 306
Query: 196 SDGNSKVKLRARLSNPMPKTQ------AVKGG 221
+G+ L L+ P+ K Q A KGG
Sbjct: 307 -EGSC---LEVTLAKPVDKEQYSRYQKAAKGG 334
>gi|413943841|gb|AFW76490.1| hypothetical protein ZEAMMB73_698498 [Zea mays]
Length = 413
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 9/170 (5%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ ++ + + +FVG + T+E + + YG + + ++ D +H + RGF
Sbjct: 88 GRDADSSGGDASGKIFVGGVAWETTEETFTKHFQKYGA--ITDSVIMKD-KHTRMPRGFG 144
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
FV FS D + L+ V+ G RTV+V P E + K +F+ G+PP
Sbjct: 145 FVTFS---DPSVLDRVLEDEHVIDG---RTVEVKRTVPKEEMSSKDGPKTKKIFVGGIPP 198
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188
E+++++ YG V+ + + ST + + +GF+ F + +A ++
Sbjct: 199 SLTEDKLKEHFSSYGKVVEHQIMLDHSTGRSRGFGFVTFESEDAVERVMS 248
>gi|226503497|ref|NP_001145761.1| uncharacterized protein LOC100279268 [Zea mays]
gi|219884331|gb|ACL52540.1| unknown [Zea mays]
Length = 413
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 9/170 (5%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ ++ + + +FVG + T+E + + YG + + ++ D +H + RGF
Sbjct: 88 GRDADSSGGDASGKIFVGGVAWETTEETFTKHFQKYGA--ITDSVIMKD-KHTRMPRGFG 144
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
FV FS D + L+ V+ G RTV+V P E + K +F+ G+PP
Sbjct: 145 FVTFS---DPSVLDRVLEDEHVIDG---RTVEVKRTVPKEEMSSKDGPKTKKIFVGGIPP 198
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188
E+++++ YG V+ + + ST + + +GF+ F + +A ++
Sbjct: 199 SLTEDKLKEHFSSYGKVVEHQIMLDHSTGRSRGFGFVTFESEDAVERVMS 248
>gi|356525630|ref|XP_003531427.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 20/171 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
L+VGNI T T E + + ++++G VE ++ D ++ G SR FAFV DA A
Sbjct: 72 LYVGNIPRTVTNEELAKIVQEHG--AVEKAEVMYD-KYSGRSRRFAFVTMKTVEDATAVI 128
Query: 93 KRLQKPDVVFGHPERTVKVAFAE-PLREPDPEIMAHVKTVFLDGVPPH------WKENQI 145
++L ++ R VKV E PL PD ++ ++ F+D PH +
Sbjct: 129 EKLNGTEI----GGREVKVNVTEKPLSTPDLPLLQAEESEFIDS--PHKVYVGNLAKTVT 182
Query: 146 RDQIKGY----GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 192
D +K + G V+ ++R T+K YGF+ FS+ E A I++ NN
Sbjct: 183 TDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNN 233
>gi|357153147|ref|XP_003576354.1| PREDICTED: polyadenylate-binding protein 3-like [Brachypodium
distachyon]
Length = 582
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 95/192 (49%), Gaps = 6/192 (3%)
Query: 4 LFLIYILIFPLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENIN 63
L L I K GK+ + S+ + LFVGN+ N+W+ + +K+ +++ G GV I+
Sbjct: 233 LALKAIEKLSNKTFKGKKIRVSSSQAKNKLFVGNVPNSWSHDDLKKAVEEVG-PGVLKID 291
Query: 64 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE 123
L+ D + + +RG+ FV + + +A A Y R + F V++A+P + D
Sbjct: 292 LIKDPRTDR-NRGYGFVEY--YNNACAEYSRQKMSTPNFKLDTNAPTVSWADP-KNGDSA 347
Query: 124 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ VK+V++ +P + + Q++ + +G++ +IVL + + YGF+ F A
Sbjct: 348 STSQVKSVYVKNLPKNVTQGQLKKLFEHHGEITKIVLPPSKDGHDNR-YGFVHFKDRHMA 406
Query: 184 VACINAINNKEF 195
+ + E
Sbjct: 407 MKALKNTEKYEL 418
>gi|74001711|ref|XP_857875.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 9
[Canis lupus familiaris]
Length = 287
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 25/227 (11%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 75 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---- 126
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 127 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 180
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 181 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 236
Query: 206 ARLSNPMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+S + Q +GG +G R G G + S YG+ S R GH
Sbjct: 237 VAMSKEQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGHQ 281
>gi|293336544|ref|NP_001168743.1| uncharacterized protein LOC100382538 [Zea mays]
gi|223972773|gb|ACN30574.1| unknown [Zea mays]
gi|413936749|gb|AFW71300.1| hypothetical protein ZEAMMB73_007301 [Zea mays]
gi|413936750|gb|AFW71301.1| hypothetical protein ZEAMMB73_007301 [Zea mays]
Length = 384
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 88/181 (48%), Gaps = 11/181 (6%)
Query: 25 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC 84
A + + +FVG + T+E+ + + YG + + ++ D +H + RGF FV FS
Sbjct: 49 AGGDSSGKIFVGGVAWETTEESFSKHFEKYGA--ITDSVIMKD-KHTKMPRGFGFVTFS- 104
Query: 85 HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
D K L+ V+ G RTV+V P E + + + +F+ G+P E++
Sbjct: 105 --DPSVIDKVLEDEHVIDG---RTVEVKRTVPREEMNTKDGPKTRKIFIGGLPASLTEDE 159
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204
++D YG V+ + + ST + + +GF+ F + ++ I+ ++ G +V++
Sbjct: 160 LKDHFSLYGKVLEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDL--GGKQVEI 217
Query: 205 R 205
+
Sbjct: 218 K 218
>gi|449266622|gb|EMC77664.1| putative RNA-binding protein 46, partial [Columba livia]
Length = 467
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 15/210 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I K+ I ++K EGV ++ + + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKDEILNEMKKV-TEGVVDVIVYPNATDKTKNRGFA 187
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A +RL ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRRLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 MSTTEETIKAEFNKFKPGVVERV--------KKLRDYAFVHFFHREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGG 225
+ +V L ++ Q G +S G
Sbjct: 297 DGASIEVTLAKPVNKESTWKQHFNGQISPG 326
>gi|51477708|ref|NP_001003810.1| heterogeneous nuclear ribonucleoprotein D0 isoform d [Homo sapiens]
gi|332819424|ref|XP_003310366.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Pan
troglodytes]
gi|395735086|ref|XP_003776520.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 3
[Pongo abelii]
gi|119626285|gb|EAX05880.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_g [Homo sapiens]
Length = 287
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 25/227 (11%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 75 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---- 126
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 127 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 180
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 181 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 236
Query: 206 ARLSNPMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+S + Q +GG +G R G G + S YG+ S R GH
Sbjct: 237 VAMSKEQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGHQ 281
>gi|324504723|gb|ADY42035.1| Heterogeneous nuclear ribonucleoprotein R [Ascaris suum]
Length = 619
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 18/207 (8%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS--DIQHEGLS 74
+ GK S N LF+GNI + +KE I + K++ EGV + + + D +
Sbjct: 265 LPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVVDCIIYTSPDAGANRKN 323
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 134
RGF F+ F H A A +++ + + + V +AE EPD E M+ VK +++
Sbjct: 324 RGFCFLDFCDHKAASDAKRKIHAGKLRPWNSDLVVD--WAEQQEEPDEETMSKVKVLYVR 381
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+ E Q+++ +G+V R K +DY FI F E A+ + A+N
Sbjct: 382 NLKEAVTEEQLKEMFAAHGEVER--------AKKIRDYAFIHFKEREPALKAMEALNGTV 433
Query: 195 FSDGNSKVKLRARLSNPM-PKTQAVKG 220
+ + L+ P K + V+G
Sbjct: 434 LEG----IAIEISLAKPQGDKKKTVRG 456
>gi|326923245|ref|XP_003207849.1| PREDICTED: APOBEC1 complementation factor-like [Meleagris
gallopavo]
Length = 590
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 19 GKRCGTAPSEDNDTLFVG-NICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
G+ G S DN LFVG + T +E I ++K +GV ++ + + +RGF
Sbjct: 124 GRLLGVCASVDNCRLFVGGDPPKTKKREEILAEMKKV-TDGVVDVIVYPSAADKTKNRGF 182
Query: 78 AFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
AFV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 AFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNL 239
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E I K + ++ + + R K +DY F+ F+ E AV + A+N K
Sbjct: 240 MLSTTEETIE---KEFNNIKQGAVER---VKKIRDYAFVHFNKREDAVDAMKALNGKVL- 292
Query: 197 DGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 293 DGSP---IEVTLAKPVDKDSYVR 312
>gi|116256516|ref|NP_001070735.1| heterogeneous nuclear ribonucleoprotein D0 isoform d [Mus musculus]
gi|148688365|gb|EDL20312.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_b [Mus
musculus]
Length = 287
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 25/227 (11%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 75 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---- 126
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 127 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 180
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 181 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 236
Query: 206 ARLSNPMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+S + Q +GG +G R G G + S YG+ S R GH
Sbjct: 237 VAMSKEQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGHQ 281
>gi|15220810|ref|NP_173208.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332191496|gb|AEE29617.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 369
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 22/216 (10%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LFVG + T E +G E V+++ + I G RGF FV F+ D+ A
Sbjct: 68 LFVGGVSWETTAETFANYFGKFG-EVVDSVIMTDRIT--GNPRGFGFVTFA---DSAVAE 121
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT--VFLDGVPPHWKENQIRDQIK 150
K L++ V+ +R V + P + D +I A KT +F+ G+PP +E+++++
Sbjct: 122 KVLEEDHVI---DDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFC 178
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 210
YGD+I + + T + + +GF+ F T ++ ++ FSDG KV
Sbjct: 179 VYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSV--------DRLFSDG--KVHELGDKQV 228
Query: 211 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRA 246
+ + + + G FR +G+S + + SG+A
Sbjct: 229 EIKRAEPKRTGRDNSFR-SYGASGKYDQEDSYSGKA 263
>gi|78707789|gb|ABB46764.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|78707790|gb|ABB46765.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215694736|dbj|BAG89927.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 438
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 93/196 (47%), Gaps = 9/196 (4%)
Query: 21 RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
RC S+ LFVGN+ +++ ++ ++ G GV NI + D+ +RGF FV
Sbjct: 181 RCSL--SQAKHRLFVGNVPKGLSEDELRNIIQGKG-PGVVNIEMFKDLHDPSRNRGFLFV 237
Query: 81 MFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP---LREPDPEIMAHVKTVFLDGVP 137
+ H A A ++L P+ + T V++AEP A VKT+++ +P
Sbjct: 238 EYYNHACADYAKQKLSAPNFKVDGSQLT--VSWAEPKGSSSSDSSSAAAQVKTIYVKNLP 295
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
+ + +I++ + +G+V ++VL + KR D+GF+ F+ +A+ + E
Sbjct: 296 ENASKEKIKEIFEIHGEVTKVVLPPAKAGNKR-DFGFVHFAERSSALKAVKGSEKYEIDG 354
Query: 198 GNSKVKLRARLSNPMP 213
+V + L + P
Sbjct: 355 QVLEVSMAKPLGDKKP 370
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 35/64 (54%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
VF+ G+P E+ + + + +G++ + L ++ T + K + F+ F+ + A I +
Sbjct: 111 VFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKGFAFVTFTGKDGAQRAIEDL 170
Query: 191 NNKE 194
++KE
Sbjct: 171 HDKE 174
>gi|426231613|ref|XP_004009833.1| PREDICTED: RNA-binding protein 47 [Ovis aries]
Length = 546
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 98/207 (47%), Gaps = 19/207 (9%)
Query: 11 IFPLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 70
+F + G CG D LF+G I +E I +++ EGV ++ + +
Sbjct: 90 VFEAVGLLGVGCGV----DTCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 144
Query: 71 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 129
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 145 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 201
Query: 130 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 189
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 202 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVHAMNN 255
Query: 190 INNKEFSDGNSKVKLRARLSNPMPKTQ 216
+N E +G+ L L+ P+ K Q
Sbjct: 256 LNGTEL-EGSC---LEVTLAKPVDKEQ 278
>gi|391324923|ref|XP_003736991.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Metaseiulus
occidentalis]
Length = 558
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 87/187 (46%), Gaps = 12/187 (6%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S +N LFVGNI ++ + ++ + G+ ++ + + + +RGF
Sbjct: 242 GKHIGVTISINNHRLFVGNIPKNRGRDELLEEFTKHA-PGLTDVIIYTSPDDKKKNRGFC 300
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL + V+G + V +A+P EPD E M+ VK +++ +
Sbjct: 301 FLEYESHKAASLAKRRLSTGRIKVWGC---DIIVDWADPQEEPDSETMSKVKVLYVRNLT 357
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E ++++ + +G R K +DY F+ F E A+ + NN+E
Sbjct: 358 QEVTEEKLKEVFEEFG-------GRVERVKKIRDYAFVHFEDREDALRALEKNNNREAGG 410
Query: 198 GNSKVKL 204
+V L
Sbjct: 411 APMEVSL 417
>gi|255560757|ref|XP_002521392.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
communis]
gi|223539470|gb|EEF41060.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
communis]
Length = 412
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 91/197 (46%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LFVG I T+E +G + + ++ D +H G RGF FV F+ D AA
Sbjct: 81 LFVGGISWETTEETFTSYFSKFGE--ITDSVIMRD-RHSGRPRGFGFVTFA---DLAAAD 134
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+ L++ ++ +R V+V P E + + + + +F+ G+PP E+++ + Y
Sbjct: 135 RVLEEDHII---DDRAVEVKRTVPREEMEVKGVVRARKIFVGGIPPTLTEDELGEYFSVY 191
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPM 212
G+++ + + T + + +GF+ F T ++ + E G +V+++ +
Sbjct: 192 GNIVEHQIMLDHKTGRSRGFGFVTFETEDSVEQIFSTGRTHEL--GGKRVEIK----KAV 245
Query: 213 PKTQAVKGGMSGGFRIG 229
PK G SG + G
Sbjct: 246 PKRNGGDYGSSGKYHTG 262
>gi|270002295|gb|EEZ98742.1| hypothetical protein TcasGA2_TC001297 [Tribolium castaneum]
Length = 672
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 16/171 (9%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
S DN LF GN+ T++ I+ +LK + ++G+ + + +RGFAFV F H
Sbjct: 110 SLDNCRLFFGNVPKDKTRDDIENELKKF-IDGIVKVITYPERNAHHFNRGFAFVEFQSHA 168
Query: 87 DAMAAYKRLQKPDVV--FGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
A A ++L V+ +G R + V +AEP DP++M VK +++ VP W ++
Sbjct: 169 IAAIARRKLLADGVIRPWG---RKLYVDWAEPEPMVDPDVMTQVKVLYMKNVPTFWTLDR 225
Query: 145 IRDQI-KGYGDVIRIVLARNMSTAKRKDYGFIDF---STHEAAVACINAIN 191
++ I K G+ I + R KR +Y FI F S E A+ ++++
Sbjct: 226 LKTYISKTVGE---IFIER---IYKRDNYAFIHFDERSFAERALKIFDSVS 270
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 10/164 (6%)
Query: 21 RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
+ + S DN LF+GNI T I+ L+ Y VEG+ +I + ++ ++RGF FV
Sbjct: 476 KIAVSMSVDNRRLFIGNIPRHVTLSEIQSVLEKY-VEGIVDIIFYHEPYNDSINRGFIFV 534
Query: 81 MFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPH 139
F H A A ++L ++ ++G P + V +AEPL +P+I+ V ++L +P
Sbjct: 535 EFESHRLAAIARRQLSPGNLTIWGKP---IFVDWAEPLPVVNPQILKQVTKLYLSNLPMT 591
Query: 140 WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+++ + D I+ K ++ F+ F+ + A
Sbjct: 592 LSSEELKSFLCELLDPSHII-----KVHKINNFAFVHFTLRKYA 630
>gi|8778468|gb|AAF79476.1|AC022492_20 F1L3.34 [Arabidopsis thaliana]
Length = 392
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 22/216 (10%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LFVG + T E +G E V+++ + I G RGF FV F+ D+ A
Sbjct: 91 LFVGGVSWETTAETFANYFGKFG-EVVDSVIMTDRIT--GNPRGFGFVTFA---DSAVAE 144
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT--VFLDGVPPHWKENQIRDQIK 150
K L++ V+ +R V + P + D +I A KT +F+ G+PP +E+++++
Sbjct: 145 KVLEEDHVI---DDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFC 201
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 210
YGD+I + + T + + +GF+ F T ++ ++ FSDG KV
Sbjct: 202 VYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSV--------DRLFSDG--KVHELGDKQV 251
Query: 211 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRA 246
+ + + + G FR +G+S + + SG+A
Sbjct: 252 EIKRAEPKRTGRDNSFR-SYGASGKYDQEDSYSGKA 286
>gi|350645567|emb|CCD59692.1| apobec-1 complementation factor, putative [Schistosoma mansoni]
Length = 702
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 17/185 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I + TK+ I ++ +GV+++ + + + +RGFA
Sbjct: 133 GKLLGVCYSIDNCRLFIGGIPKSKTKDEIMLEMSKV-TDGVKDVIVYPSLVDKTKNRGFA 191
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP R+ D IM+ V+ +++ +
Sbjct: 192 FVEYENHKTAAMARRKLIPGRIHLWGH---QIAVDWAEPERQVDENIMSKVRILYVRNLM 248
Query: 138 PHWKENQIRDQ----IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
H EN ++D I V R+ K +DY F+ F A+ + +++
Sbjct: 249 LHTTENAVKDHFNQAIHSMDAVERV--------KKIRDYAFVHFHNRIDAITALKQLDDI 300
Query: 194 EFSDG 198
+G
Sbjct: 301 CVKNG 305
>gi|417410064|gb|JAA51513.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 360
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 26/227 (11%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 149 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---- 200
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 201 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 254
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 255 EYFGGFGEVESIELPMD-KTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 309
Query: 206 ARLSNPMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+S + Q A +GG +G R G G + S YG+ S R GH
Sbjct: 310 VAMSKEQYQQQQQWASRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGHQ 354
>gi|256077575|ref|XP_002575078.1| apobec-1 complementation factor [Schistosoma mansoni]
Length = 847
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 17/185 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I + TK+ I ++ +GV+++ + + + +RGFA
Sbjct: 133 GKLLGVCYSIDNCRLFIGGIPKSKTKDEIMLEMSKV-TDGVKDVIVYPSLVDKTKNRGFA 191
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP R+ D IM+ V+ +++ +
Sbjct: 192 FVEYENHKTAAMARRKLIPGRIHLWGH---QIAVDWAEPERQVDENIMSKVRILYVRNLM 248
Query: 138 PHWKENQIRDQ----IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
H EN ++D I V R+ K +DY F+ F A+ + +++
Sbjct: 249 LHTTENAVKDHFNQAIHSMDAVERV--------KKIRDYAFVHFHNRIDAITALKQLDDI 300
Query: 194 EFSDG 198
+G
Sbjct: 301 CVKNG 305
>gi|222622445|gb|EEE56577.1| hypothetical protein OsJ_05928 [Oryza sativa Japonica Group]
Length = 510
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 86/182 (47%), Gaps = 10/182 (5%)
Query: 23 GTAPSEDND-TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM 81
G AP D+ +FVG + T+E+ + + YG + + ++ D +H + RGF FV
Sbjct: 170 GRAPGGDSSGKIFVGGVAWETTEESFSKHFEKYGA--ITDSVIMKD-KHTKMPRGFGFVT 226
Query: 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 141
FS D K L+ V+ G RTV+V P E + + +F+ G+P
Sbjct: 227 FS---DPSVIDKVLEDEHVIDG---RTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSSLT 280
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201
E+++R+ YG ++ + + ST + + +GF+ F + ++ I+ ++ +
Sbjct: 281 EDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVE 340
Query: 202 VK 203
+K
Sbjct: 341 IK 342
>gi|9588102|dbj|BAB03468.1| RNA binding protein p37 AUF1 [Rattus norvegicus]
Length = 285
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 103/227 (45%), Gaps = 25/227 (11%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + + ++ + G SRGF FV+F
Sbjct: 73 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF---- 124
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 125 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 178
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 179 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 234
Query: 206 ARLSNPMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+S + Q +GG +G R G G + S YG+ S R GH
Sbjct: 235 VAMSKEQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGHQ 279
>gi|356542762|ref|XP_003539834.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Glycine
max]
Length = 501
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 86/179 (48%), Gaps = 15/179 (8%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
+ GK+ + S+ LF+GN+ +W E +K+ + + G ++N N +R
Sbjct: 193 EFMGKKIKCSKSQAKHRLFIGNVPRSWGVEDLKKIVTEIGPGDMKNTNN---------NR 243
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
GFAF+ + H A + +++ P G E V++A+P + + + VK V++
Sbjct: 244 GFAFIDYYNHACAEYSRQKMMSPTFKLG--ENAPTVSWADP-KNAESSAASQVKAVYVKN 300
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+P + + Q++ + +G + ++VL S ++ GF+ F+ A + A+ N E
Sbjct: 301 LPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNA---MKALKNTE 356
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 186
H V++ G+P H + ++ + G+V + + + +++ K +GF+ F++ E A
Sbjct: 127 HGSEVYIGGIP-HASDEDLKSLCERIGEVAEVRIMKGKDSSENKGFGFVTFTSVELASKA 185
Query: 187 INAINNKEF 195
I +NN EF
Sbjct: 186 IEELNNTEF 194
>gi|127138754|ref|NP_001076010.1| heterogeneous nuclear ribonucleoprotein D0 isoform d [Rattus
norvegicus]
gi|149046820|gb|EDL99594.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_d [Rattus
norvegicus]
Length = 285
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 103/227 (45%), Gaps = 25/227 (11%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + + ++ + G SRGF FV+F
Sbjct: 73 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF---- 124
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 125 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 178
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 179 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 234
Query: 206 ARLSNPMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+S + Q +GG +G R G G + S YG+ S R GH
Sbjct: 235 VAMSKEQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGHQ 279
>gi|124359745|gb|ABD32695.2| RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding
EF-hand [Medicago truncatula]
Length = 559
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 13/179 (7%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K+ GK SE LF+GNI TWT++ ++ ++ G GVE+I+L+ D Q++ +
Sbjct: 168 KEFKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVG-PGVESIDLIKDPQNQSRN 226
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH------V 128
RGFAFV++ + +A A + R + V F T V +A+P PD A V
Sbjct: 227 RGFAFVLY--YNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQFYRTAV 284
Query: 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
+ V L G ++Q +Q+ V + + R MS R D D VA I
Sbjct: 285 QPVLLYGTECWAVKSQHENQVS----VAEMRMLRWMSGKTRHDRIRNDTIRERVGVAPI 339
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 103 GHPERTVKVAFA-EPLREPDPEIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRI 158
G E +K A E RE E+++ H VF+ G+P ++ +R+ + GD++ I
Sbjct: 74 GAEEDELKPALIDEEEREKHDELLSRPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEI 133
Query: 159 VLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN-----SKVKLRARLSNPMP 213
L ++ T + K Y F+ + T E A I+ I+NKEF S+ K R + N +P
Sbjct: 134 KLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETKHRLFIGN-IP 192
Query: 214 KT 215
KT
Sbjct: 193 KT 194
>gi|91077966|ref|XP_967803.1| PREDICTED: similar to APOBEC1 complementation factor [Tribolium
castaneum]
Length = 363
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 16/171 (9%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
S DN LF GN+ T++ I+ +LK + ++G+ + + +RGFAFV F H
Sbjct: 110 SLDNCRLFFGNVPKDKTRDDIENELKKF-IDGIVKVITYPERNAHHFNRGFAFVEFQSHA 168
Query: 87 DAMAAYKRLQKPDVV--FGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
A A ++L V+ +G R + V +AEP DP++M VK +++ VP W ++
Sbjct: 169 IAAIARRKLLADGVIRPWG---RKLYVDWAEPEPMVDPDVMTQVKVLYMKNVPTFWTLDR 225
Query: 145 IRDQI-KGYGDVIRIVLARNMSTAKRKDYGFIDF---STHEAAVACINAIN 191
++ I K G+ I + R KR +Y FI F S E A+ ++++
Sbjct: 226 LKTYISKTVGE---IFIER---IYKRDNYAFIHFDERSFAERALKIFDSVS 270
>gi|346703256|emb|CBX25354.1| hypothetical_protein [Oryza brachyantha]
Length = 503
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 92/181 (50%), Gaps = 6/181 (3%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
++ GKR + S+ + LF+GN+ ++WT++ ++ +++ G GV +L+ + +R
Sbjct: 182 KLKGKRIRVSSSQAKNKLFIGNVPHSWTQDDFRKAVEEVG-PGVLKADLMK-VSSTNRNR 239
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
G+ FV + H A A +++ P F V++A+P + D + VK+V++
Sbjct: 240 GYGFVEYYNHACAEYARQKMSTP--TFKLDTNAPTVSWADP-KNNDSASTSQVKSVYVKN 296
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P + + Q+++ + +G++ ++VL + + YGF+ F A+ + E
Sbjct: 297 LPKNVTQAQLKNLFERHGEITKVVLPPSRGGHDNR-YGFVHFKDRSMAMRALQNTERYEL 355
Query: 196 S 196
+
Sbjct: 356 A 356
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 21/152 (13%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
++ G I + + E +K+ + G E VE V ++ + SRG+AFV F A+ A
Sbjct: 121 VYFGGISSDISSEDLKKLCEPVG-EVVE----VRMMKGKDDSRGYAFVTFRTKDLALEAV 175
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+ L + + ++V+ ++ + +F+ VP W ++ R ++
Sbjct: 176 RELNNAKLKG----KRIRVSSSQAKNK-----------LFIGNVPHSWTQDDFRKAVEEV 220
Query: 153 GD-VIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
G V++ L + ST + + YGF+++ H A
Sbjct: 221 GPGVLKADLMKVSSTNRNRGYGFVEYYNHACA 252
>gi|308505824|ref|XP_003115095.1| CRE-HRP-2 protein [Caenorhabditis remanei]
gi|308259277|gb|EFP03230.1| CRE-HRP-2 protein [Caenorhabditis remanei]
Length = 645
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 12/179 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGL-SRG 76
GK S N LF+GNI T +K+ I ++LK + EGV ++ + S +E + +RG
Sbjct: 293 TGKPLKVNVSIANTRLFLGNIPKTKSKDEILEELKSHA-EGVTDVIVYSVPDNEKIRNRG 351
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F FV F H A +++ + + + + V V +AE EPD + M+ VK +++ +
Sbjct: 352 FCFVDFIDHKTASDIKRKIAQHKIRPFNAD--VYVDWAEQQEEPDEDTMSKVKVLYIRNI 409
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E ++ + K Y + R+ K KDY FI F+ + + + N KE
Sbjct: 410 KEAVTEEKLTELFKEYASLDRV--------KKVKDYAFIHFNERDDCMKAMEQWNGKEL 460
>gi|146197797|dbj|BAF57616.1| pRM10 protein [Dugesia japonica]
Length = 325
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 96/206 (46%), Gaps = 24/206 (11%)
Query: 28 EDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH 85
ED+D+ LFVG + T+E +K + +G I L + G SRGF FV
Sbjct: 67 EDDDSRKLFVGGLSWETTEEDLKNYFETWGKVAHCVIKL---DKMTGNSRGFGFVTMDTE 123
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
D++ K L+ P+ + + + A+P +EP+ K +F+ G+ P E QI
Sbjct: 124 -DSLK--KVLEVPEHRLKN--KKIDPKPAKPTKEPN-------KKIFVGGLSPEVTEEQI 171
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
++ YG V + L + S KRK Y F+ F+T +AA I IN K+ G SK +R
Sbjct: 172 KEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAI--INEKQDVLG-SKCDVR 228
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHG 231
+ PK Q K M+ G G
Sbjct: 229 MAV----PKDQVNKNKMAAWGPYGSG 250
>gi|313212996|emb|CBY36886.1| unnamed protein product [Oikopleura dioica]
Length = 404
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 13/167 (7%)
Query: 24 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 83
S DN LFVG I + KE I +LK + V ++ + + +RGFAFV +
Sbjct: 237 VCSSVDNCRLFVGGIPKSRKKEEIMHELKKV-TDKVADVIVYPSAADKNKNRGFAFVEYE 295
Query: 84 CHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKE 142
H A A ++L V ++G+P + V +AEP + D +IM VK +++ + E
Sbjct: 296 THKAAAMARRKLVSGRVQLWGNP---IAVDWAEPEEDVDDDIMKEVKVLYVRNLLIETSE 352
Query: 143 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 189
+R YG V R+ K +DY F+ F E+A A + A
Sbjct: 353 ESLRAHFSQYGQVERV--------KKIRDYAFVHFVERESADAAVKA 391
>gi|125555768|gb|EAZ01374.1| hypothetical protein OsI_23407 [Oryza sativa Indica Group]
Length = 407
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 9/156 (5%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG + T+E+ + + YG + + ++ D +H + RGF FV FS D
Sbjct: 93 IFVGGVAWETTEESFTKHFEKYGA--ISDSVIMKD-KHTKMPRGFGFVTFS---DPSVID 146
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
K LQ + G RTV+V P E + + +F+ G+PP E+++++ Y
Sbjct: 147 KVLQDEHTIDG---RTVEVKRTVPREEMSSKDGPKTRKIFVGGIPPSLTEDKLKEHFSSY 203
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188
G V+ + + T + + +GF+ F +A ++
Sbjct: 204 GKVVEHQIMLDHGTGRSRGFGFVTFENEDAVERVMS 239
>gi|449500421|ref|XP_004174936.1| PREDICTED: probable RNA-binding protein 46 [Taeniopygia guttata]
Length = 757
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 21/205 (10%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKDKKKEEILNEMKKV-TEGVVDVIVYPNATDKTKNRGFA 187
Query: 79 FVMFSCHVDAMAAYKRLQKPDVV--FGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FV + H A A +RL P +GH T++V +A+P + D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRRL-IPGTFQPWGH---TIQVDWADPEKIVDEETMQRVKVLYVRNL 243
Query: 137 PPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
E++I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 244 MISTTEDKIKAEFNKFKPGVVERV--------KKLRDYAFVHFFHREDAVAAMSVMNGKC 295
Query: 195 FSDGNSKVKLRARLSNPMPKTQAVK 219
DG S + L+ P+ K + K
Sbjct: 296 I-DGAS---IEVTLAKPVNKESSWK 316
>gi|125597614|gb|EAZ37394.1| hypothetical protein OsJ_21732 [Oryza sativa Japonica Group]
Length = 344
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 9/156 (5%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG + T+E+ + + YG + + ++ D +H + RGF FV FS D
Sbjct: 30 IFVGGVAWETTEESFTKHFEKYGA--ISDSVIMKD-KHTKMPRGFGFVTFS---DPSVID 83
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
K LQ + G RTV+V P E + + +F+ G+PP E+++++ Y
Sbjct: 84 KVLQDEHTIDG---RTVEVKRTVPREEMSSKDGPKTRKIFVGGIPPSLTEDKLKEHFSSY 140
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188
G V+ + + T + + +GF+ F +A ++
Sbjct: 141 GKVVEHQIMLDHGTGRSRGFGFVTFENEDAVERVMS 176
>gi|349603648|gb|AEP99431.1| Heteroproteinous nuclear ribonucleoprotein Q-like protein, partial
[Equus caballus]
Length = 367
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 231 GKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFC 289
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 290 FLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNLA 346
Query: 138 PHWKENQIRDQIKGYGDVIRI 158
E + +G + R+
Sbjct: 347 NTVTEEILEKAFSQFGKLERV 367
>gi|297850158|ref|XP_002892960.1| hypothetical protein ARALYDRAFT_335030 [Arabidopsis lyrata subsp.
lyrata]
gi|297338802|gb|EFH69219.1| hypothetical protein ARALYDRAFT_335030 [Arabidopsis lyrata subsp.
lyrata]
Length = 354
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 19/173 (10%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LFVG + T+E +G E V+++ + I G RGF FV F+ D+ A
Sbjct: 61 LFVGGVSWETTEETFANYFGKFG-EVVDSVIMTDRIT--GNPRGFGFVTFA---DSAVAE 114
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT--VFLDGVPPHWKENQIRDQIK 150
K L++ V+ +R V + P + D +I A KT +F+ G+PP +E+++++
Sbjct: 115 KVLEEEHVI---DDRKVDLKRTVPRGDRDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFC 171
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203
YGD+I + + T + + +GF+ F T ++ ++ FSD +K
Sbjct: 172 VYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSV--------DRLFSDAKVDIK 216
>gi|348511819|ref|XP_003443441.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0-like
[Oreochromis niloticus]
Length = 317
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 14/203 (6%)
Query: 11 IFPLKQICGKRCGTAPSEDNDT----LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS 66
+ LK+ G C + E + LFVG + T E +++ + YG + + +V
Sbjct: 9 VCSLKKRDGLSCAPSSGETMTSKLCKLFVGGLNVETTDEGLRKYFEQYGT--LSDCVVVM 66
Query: 67 DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA 126
+ Q G SR F F+ +S +A AA KP VV G+ + E PD I+A
Sbjct: 67 N-QQLGRSRCFGFITYSTPEEADAAMA--AKPHVVEGNNVEVKRAIAREDANNPD--ILA 121
Query: 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 186
+VK +F+ GV H E + + +G V + + + T +++ +GF+ F ++A
Sbjct: 122 NVKKIFVGGVKDHIVEENLTEYFSQFGAVEKAEIISDKQTGRKRGFGFVFFEDTDSAT-- 179
Query: 187 INAINNKEFSDGNSKVKLRARLS 209
A+ K + +KV+++ L+
Sbjct: 180 -KAVLTKYHTINGNKVEVKKALT 201
>gi|346703160|emb|CBX25259.1| hypothetical_protein [Oryza brachyantha]
Length = 455
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 91/181 (50%), Gaps = 6/181 (3%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
++ GKR + S+ + LF+GN+ ++WT++ ++ +++ G GV +L+ + +R
Sbjct: 154 KLKGKRIRVSSSQAKNKLFIGNVPHSWTQDDFRKAVEEVG-PGVLKADLMK-VSSTNRNR 211
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
G+ FV + H A A +++ P F V++A+P + D + VK+V++
Sbjct: 212 GYGFVEYYNHACAEYARQKMSTP--TFKLDTNAPTVSWADP-KNNDSASTSQVKSVYVKN 268
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P + + +++ + +GD+ ++VL + + YGF+ F A+ + E
Sbjct: 269 LPKNVTQAELKKLFEHHGDITKVVLPPSRGGHDNR-YGFVHFKDRSMAMRALQNTERYEL 327
Query: 196 S 196
+
Sbjct: 328 A 328
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 21/152 (13%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
++VG I + + + +K+ + G E VE V ++ + SRG+AFV F A+ A
Sbjct: 93 VYVGGISSDISSQDLKKLCEPVG-EVVE----VRMMKGKDDSRGYAFVTFRTKDLALEAV 147
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+ L + + ++V+ ++ + +F+ VP W ++ R ++
Sbjct: 148 RELNNAKL----KGKRIRVSSSQAKNK-----------LFIGNVPHSWTQDDFRKAVEEV 192
Query: 153 GD-VIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
G V++ L + ST + + YGF+++ H A
Sbjct: 193 GPGVLKADLMKVSSTNRNRGYGFVEYYNHACA 224
>gi|242093370|ref|XP_002437175.1| hypothetical protein SORBIDRAFT_10g022380 [Sorghum bicolor]
gi|241915398|gb|EER88542.1| hypothetical protein SORBIDRAFT_10g022380 [Sorghum bicolor]
Length = 414
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 9/170 (5%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ + + + +FVG + T+E + + YG + + ++ D +H + RGF
Sbjct: 87 GRDADSGGGDSSGKIFVGGVAWETTEETFTKHFQKYGA--ITDSVIMKD-KHTRMPRGFG 143
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
FV FS D + L+ V+ G RTV+V P E + K +F+ G+P
Sbjct: 144 FVTFS---DPSVLDRVLEDAHVIDG---RTVEVKRTVPKEEMSSKDGPKTKKIFVGGIPS 197
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188
E+++++ YG V+ + + ST + + +GF+ F + +A ++
Sbjct: 198 SLTEDKLKEHFSSYGKVVEHQIMLDHSTGRSRGFGFVTFESEDAVERVMS 247
>gi|410903808|ref|XP_003965385.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like isoform
3 [Takifugu rubripes]
Length = 264
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 18/222 (8%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +FVG + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 53 EDEGKMFVGGL--SW--DTTKKDLKDYFCKYGEVVDCTLKLDPITGRSRGFGFVLF---- 104
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + + V E + +P + + VK +F+ G+ P E ++R
Sbjct: 105 ------KEPESVEKVASQKEHKLNGKVIDPKKAKAMKGKEPVKKIFVGGLSPDTPEEKVR 158
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206
+ +G+V I L T KR+ + FI F E V CI + K + G SK +++
Sbjct: 159 EYFGAFGEVESIELPMETKTNKRRGFCFITFK-EEEPVKCI--MEKKFHNIGLSKCEIKV 215
Query: 207 RLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGH 248
+S + Q GG G G YG+ R GH
Sbjct: 216 AVSKEQYQQQQYWGGRGGYSSRARGRGDQSGGYGKSPRRGGH 257
>gi|357501821|ref|XP_003621199.1| RNA-binding protein [Medicago truncatula]
gi|355496214|gb|AES77417.1| RNA-binding protein [Medicago truncatula]
Length = 782
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 86/174 (49%), Gaps = 7/174 (4%)
Query: 21 RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
+ + S+ LF+GNI +W ++ +K+ + D G GV + L+ D+++ +RG+AF+
Sbjct: 452 KIKCSKSQAKSRLFIGNIPRSWGEKDLKKVVSDIG-PGVTAVELIKDMKNISNNRGYAFI 510
Query: 81 MFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHW 140
+ H + A Y R + F + V +AEP + D + VK V++ +P +
Sbjct: 511 DY--HNNQCAEYSRQKMTSPSFKLGDNFPTVNWAEP-KNADSSASSQVKEVYVKNLPKNV 567
Query: 141 KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+ Q++ + +G + ++VL ++ GF+ F+ A + A+ N E
Sbjct: 568 TKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFVHFAERSNA---MKALKNTE 618
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 186
H V++ G+P K +++ + G+V+++ + + ++ + + F+ + + E A
Sbjct: 380 HKSEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFAFVTYRSIELASKA 439
Query: 187 INAINNKEFSDGN---SKVKLRARL 208
I +NN EF G SK + ++RL
Sbjct: 440 IKELNNTEFKAGKIKCSKSQAKSRL 464
>gi|71987750|ref|NP_493049.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
gi|42733185|emb|CAB70238.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
Length = 611
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 12/180 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGL-SRG 76
GK S N LF+GNI T +K+ I ++LK + EGV ++ + S +E + +RG
Sbjct: 268 TGKPLKVNVSIANTRLFIGNIPKTKSKDEILEELKTHA-EGVVDVIVYSVPDNEKIKNRG 326
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F FV F H A +++ + + + + V V +AE EPD + M+ VK +++ +
Sbjct: 327 FCFVDFIDHKTASDIKRKIAQHKIRPFNAD--VYVDWAEHQEEPDEDTMSKVKVLYIRNI 384
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E ++ + K Y + R+ K KDY FI F+ + + + N KE
Sbjct: 385 KEAVTEEKLNELFKEYASLDRV--------KKVKDYAFIHFNERDDCLKAMEEWNGKELE 436
>gi|870747|dbj|BAA09524.1| heterogeneous nuclear ribonucleoprotein D (hnRNP D) [Homo sapiens]
Length = 215
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 8 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 54
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 55 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 113
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 114 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 169
Query: 211 PMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+ Q +GG +G R G G + S YG+ S R GH
Sbjct: 170 EQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGHQ 209
>gi|268569598|ref|XP_002640564.1| C. briggsae CBR-HRP-2 protein [Caenorhabditis briggsae]
Length = 626
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 12/179 (6%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGL-SRGF 77
GK S N LF+GNI T +K+ I ++LK + EGV ++ + S +E + +RGF
Sbjct: 278 GKTLKVNISIANTRLFLGNIPKTKSKDEILEELKTHA-EGVTDVIVYSVPDNEKIRNRGF 336
Query: 78 AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV F H A +++ + + + + V V +AE EPD + M+ VK +++ +
Sbjct: 337 CFVDFIDHKTASDIKRKIAQHKIRPFNAD--VYVDWAEHQDEPDADTMSKVKVLYIRNIK 394
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E ++ + K Y + R+ K KDY FI F+ + V + N K+
Sbjct: 395 EAVTEEKLTELFKEYASLDRV--------KKVKDYAFIHFNERDDCVKAMEEWNGKDLE 445
>gi|354495150|ref|XP_003509694.1| PREDICTED: hypothetical protein LOC100762069 [Cricetulus griseus]
gi|344255246|gb|EGW11350.1| Heterogeneous nuclear ribonucleoprotein D-like [Cricetulus griseus]
Length = 560
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 15/162 (9%)
Query: 23 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVM 81
T +D +F+G + K+A+ + L +G E I+ + I + GLSRGF FV+
Sbjct: 25 ATKNEQDASKMFIGGLSPELNKQALLKYLSHFG----EVIDFIIKIDPNTGLSRGFGFVL 80
Query: 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 141
F D+ A K LQ D H KV F R E +K VF+ G+ P
Sbjct: 81 FK---DSSAVEKVLQVKD----HKVDGKKVEFR---RAKAVESQFPIKKVFVGGLNPRVS 130
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
E +IR +G + +VL +T +R+ +GFI ++ A
Sbjct: 131 EEKIRAYFGTFGQIEAVVLPLCSNTQRRRAFGFIKYTEETPA 172
>gi|148230364|ref|NP_001091533.1| heterogeneous nuclear ribonucleoprotein D0 [Bos taurus]
gi|146231918|gb|ABQ13034.1| heterogeneous nuclear ribonucleoprotein D [Bos taurus]
gi|296486390|tpg|DAA28503.1| TPA: heterogeneous nuclear ribonucleoprotein D [Bos taurus]
Length = 306
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 260
Query: 211 PMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+ Q +GG +G R G G + S YG+ S R GH
Sbjct: 261 EQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGHQ 300
>gi|2773158|gb|AAB96683.1| heterogeneous nuclear ribonucleoprotein D0B [Homo sapiens]
Length = 298
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 91 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 137
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 138 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 196
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 197 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 252
Query: 211 PMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+ Q +GG +G R G G + S YG+ S R GH
Sbjct: 253 EQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGHQ 292
>gi|119626284|gb|EAX05879.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_f [Homo sapiens]
Length = 277
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 70 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 116
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 117 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 175
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 176 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 231
Query: 211 PMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+ Q +GG +G R G G + S YG+ S R GH
Sbjct: 232 EQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGHQ 271
>gi|124360410|gb|ABD33357.2| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 742
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 86/174 (49%), Gaps = 7/174 (4%)
Query: 21 RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
+ + S+ LF+GNI +W ++ +K+ + D G GV + L+ D+++ +RG+AF+
Sbjct: 417 KIKCSKSQAKSRLFIGNIPRSWGEKDLKKVVSDIG-PGVTAVELIKDMKNISNNRGYAFI 475
Query: 81 MFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHW 140
+ H + A Y R + F + V +AEP + D + VK V++ +P +
Sbjct: 476 DY--HNNQCAEYSRQKMTSPSFKLGDNFPTVNWAEP-KNADSSASSQVKEVYVKNLPKNV 532
Query: 141 KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+ Q++ + +G + ++VL ++ GF+ F+ A + A+ N E
Sbjct: 533 TKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFVHFAERSNA---MKALKNTE 583
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 186
H V++ G+P K +++ + G+V+++ + + ++ + + F+ + + E A
Sbjct: 345 HKSEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFAFVTYRSIELASKA 404
Query: 187 INAINNKEFSDGN---SKVKLRARL 208
I +NN EF G SK + ++RL
Sbjct: 405 IKELNNTEFKAGKIKCSKSQAKSRL 429
>gi|14110414|ref|NP_002129.2| heterogeneous nuclear ribonucleoprotein D0 isoform c [Homo sapiens]
gi|114594009|ref|XP_001143722.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Pan troglodytes]
gi|395735083|ref|XP_003776519.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Pongo abelii]
gi|402869389|ref|XP_003898745.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Papio anubis]
gi|870745|dbj|BAA09523.1| heterogeneous nuclear ribonucleoprotein D (hnRNP D) [Homo sapiens]
gi|2815613|gb|AAC23475.1| heterogeneous nuclear ribonucleoprotein D [Homo sapiens]
gi|18645125|gb|AAH23977.1| Heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Homo sapiens]
gi|19683928|gb|AAH26015.1| Heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Homo sapiens]
gi|119626282|gb|EAX05877.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_e [Homo sapiens]
gi|119626286|gb|EAX05881.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_e [Homo sapiens]
gi|119626287|gb|EAX05882.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_e [Homo sapiens]
gi|208966456|dbj|BAG73242.1| heterogeneous nuclear ribonucleoprotein D [synthetic construct]
gi|380783617|gb|AFE63684.1| heterogeneous nuclear ribonucleoprotein D0 isoform c [Macaca
mulatta]
gi|383417963|gb|AFH32195.1| heterogeneous nuclear ribonucleoprotein D0 isoform c [Macaca
mulatta]
gi|384940050|gb|AFI33630.1| heterogeneous nuclear ribonucleoprotein D0 isoform c [Macaca
mulatta]
gi|410265342|gb|JAA20637.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
gi|410292488|gb|JAA24844.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 306
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 260
Query: 211 PMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+ Q +GG +G R G G + S YG+ S R GH
Sbjct: 261 EQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGHQ 300
>gi|410351151|gb|JAA42179.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 307
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 100 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 146
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 147 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 205
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 206 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 261
Query: 211 PMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+ Q +GG +G R G G + S YG+ S R GH
Sbjct: 262 EQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGHQ 301
>gi|74001695|ref|XP_848950.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Canis lupus familiaris]
Length = 306
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 260
Query: 211 PMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+ Q +GG +G R G G + S YG+ S R GH
Sbjct: 261 EQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGHQ 300
>gi|432918730|ref|XP_004079638.1| PREDICTED: probable RNA-binding protein 46-like [Oryzias latipes]
Length = 591
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 15/198 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G+I KE I ++++ +GV ++ + +RGFA
Sbjct: 141 GRFIGVCVSLDNCRLFIGSIPRDRRKEEILEEMRKV-TDGVVDVIVYPSSSDRNRNRGFA 199
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GHP ++V +AEP ++ + E M V+ +++ +
Sbjct: 200 FVEYESHKTAAMARRKLIPGTFQLWGHP---IQVDWAEPEKDMEEEAMQRVRVLYVRNLM 256
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E +R + + G V R+ K DY F+ F + A+A + +N +
Sbjct: 257 LDTTEETLRREFSRFKPGSVERV--------KKLTDYAFVHFRSRSEALATLAVMNGVQI 308
Query: 196 SDGNSKVKLRARLSNPMP 213
+V L N P
Sbjct: 309 DGTTVEVSLAKPTGNKEP 326
>gi|403263350|ref|XP_003924000.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Saimiri boliviensis boliviensis]
Length = 306
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 260
Query: 211 PMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+ Q +GG +G R G G + S YG+ S R GH
Sbjct: 261 EQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGHQ 300
>gi|46806499|dbj|BAD17623.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
gi|46806518|dbj|BAD17631.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
Length = 374
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 10/167 (5%)
Query: 23 GTAPSEDND-TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM 81
G AP D+ +FVG + T+E+ + + YG + + ++ D +H + RGF FV
Sbjct: 57 GRAPGGDSSGKIFVGGVAWETTEESFSKHFEKYGA--ITDSVIMKD-KHTKMPRGFGFVT 113
Query: 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 141
FS D K L+ V+ G RTV+V P E + + +F+ G+P
Sbjct: 114 FS---DPSVIDKVLEDEHVIDG---RTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSSLT 167
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188
E+++R+ YG ++ + + ST + + +GF+ F + ++ I+
Sbjct: 168 EDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVIS 214
>gi|115478330|ref|NP_001062760.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|49387841|dbj|BAD26506.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|49388840|dbj|BAD26030.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|113630993|dbj|BAF24674.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|215695254|dbj|BAG90445.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737768|dbj|BAG96898.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641205|gb|EEE69337.1| hypothetical protein OsJ_28655 [Oryza sativa Japonica Group]
Length = 245
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 15/171 (8%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
L+VGNI T T + + D+G VE ++ D ++ G SR F FV S +A AA
Sbjct: 72 LYVGNIPRTVTNDELAAMFADHGT--VERAEVMFD-KYTGRSRRFGFVTMSTPEEANAAI 128
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLR--------EPDPEIMAHVKTVFLDGVPPHWKENQ 144
+ L + +V R +KV E EP+P + V++ +
Sbjct: 129 ESLNETEV----GGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEM 184
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+++ G+V+ ++R TAK K YGF+ FS+ E A ++ NN E
Sbjct: 185 LKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAEL 235
>gi|395834191|ref|XP_003790095.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Otolemur garnettii]
Length = 306
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 260
Query: 211 PMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+ Q +GG +G R G G + S YG+ S R GH
Sbjct: 261 EQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGHQ 300
>gi|116256514|ref|NP_031542.2| heterogeneous nuclear ribonucleoprotein D0 isoform c [Mus musculus]
gi|29145079|gb|AAH49098.1| Heterogeneous nuclear ribonucleoprotein D [Mus musculus]
gi|148688366|gb|EDL20313.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_c [Mus
musculus]
Length = 306
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 25/231 (10%)
Query: 24 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMF 82
A + +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 90 AAAQREEWKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145
Query: 83 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKE 142
K + D V E + +P R + VK +F+ G+ P E
Sbjct: 146 ----------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPE 195
Query: 143 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSK 201
+IR+ G+G+V I L + T KR+ + FI F E + I K++ + G SK
Sbjct: 196 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSK 251
Query: 202 VKLRARLSNPMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+++ +S + Q +GG +G R G G + S YG+ S R GH
Sbjct: 252 CEIKVAMSKEQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGHQ 300
>gi|3747052|gb|AAC77437.1| estrogen response element binding protein [Saguinus oedipus]
Length = 358
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKGEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 260
Query: 211 PMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+ Q +GG +G R G G + S YG+ S R GH
Sbjct: 261 EQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGHQ 300
>gi|359482522|ref|XP_002276110.2| PREDICTED: nucleolin-like [Vitis vinifera]
Length = 501
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 9/156 (5%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
ED + LFVG I ++E +YG E +++ ++ +H G RGF F+ F+ D
Sbjct: 196 EDKEKLFVGGISWETSEEIFTNYFSNYG-EITDSVIMMD--RHTGRPRGFGFITFA---D 249
Query: 88 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRD 147
A K L++ V+ G R V+V P + ++ + +F+ G+P E++++D
Sbjct: 250 PAVADKVLEEDHVIDG---RAVEVKKTVPREGMEVRGVSKTRKIFVGGIPSSLTEDELKD 306
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
YG ++ + + T + + +GF+ F + +A
Sbjct: 307 YFSSYGAIVENQIMLDHVTGRSRGFGFVTFVSEDAV 342
>gi|357124085|ref|XP_003563737.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
2-like isoform 1 [Brachypodium distachyon]
Length = 410
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 9/170 (5%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK P++ + +FVG + T+E + + YG + + ++ D +H + RGF
Sbjct: 71 GKDVAAEPADGSGKIFVGGVAWETTEETFSKHFQKYGA--ITDSVIMKD-KHTKMPRGFG 127
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
FV FS D + L+ + G RTV+V P E + + +F+ G+P
Sbjct: 128 FVTFS---DPSVIDRVLEDEHTIDG---RTVEVKRTVPREEMSTKDGPKTRKIFVGGIPT 181
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188
E ++++ YG V + + ST + + +GF+ F + +A ++
Sbjct: 182 SLTEGKLKEHFSSYGKVEEHQIMVDHSTGRSRGFGFVTFESEDAVERVMS 231
>gi|413954077|gb|AFW86726.1| hypothetical protein ZEAMMB73_661369 [Zea mays]
Length = 401
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 10/151 (6%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG + T+E + + YG + + ++ D +H + RGF FV FS D
Sbjct: 95 VFVGGVAWETTEETFTKHFQKYGA--ITDSVIMKD-KHTRMPRGFGFVTFS---DPSVLD 148
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+ L+ V+ G RTV+V P +E + K +F+ G+PP E+++++ Y
Sbjct: 149 RVLEDEHVIDG---RTVEVKRTVP-KELSSKDGPKTKKIFVGGIPPSLTEDKLKEHFSSY 204
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
G V+ + + ST + + +GF+ F + +A
Sbjct: 205 GKVVEHQIMLDHSTGRSRGFGFVTFESEDAV 235
>gi|357140379|ref|XP_003571746.1| PREDICTED: uncharacterized protein LOC100831046 isoform 1
[Brachypodium distachyon]
Length = 403
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 9/156 (5%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG + T+E + YG + + ++ D +H + RGF FV FS D
Sbjct: 67 IFVGGVAWETTEETFSKHFGKYGA--ITDSVIMKD-KHTKMPRGFGFVTFS---DPSVID 120
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
K L+ + G RTV+V P E + + +F+ G+P E+ +RD Y
Sbjct: 121 KVLEDEHNIDG---RTVEVKRTVPREEMSSKDGPKTRKIFVGGLPASLSEDDLRDHFSSY 177
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188
G V+ + + ST + + +GF+ F + ++ I+
Sbjct: 178 GKVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 213
>gi|326531676|dbj|BAJ97842.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 413
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 82/173 (47%), Gaps = 11/173 (6%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG + T+E+ + YG + + ++ D +H + RGF FV FS D
Sbjct: 64 IFVGGVAWETTEESFSKHFGKYGA--ITDSVIMKD-KHTKMPRGFGFVTFS---DPSVID 117
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
K L+ + G RTV+V P E + + +F+ G+P E+ +RD Y
Sbjct: 118 KVLEDEHNIDG---RTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSY 174
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
G+V+ + + ST + + +GF+ F + ++ I+ ++ G +V+++
Sbjct: 175 GNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDL--GGKQVEIK 225
>gi|326487243|dbj|BAJ89606.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326506666|dbj|BAJ91374.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 413
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 82/173 (47%), Gaps = 11/173 (6%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG + T+E+ + YG + + ++ D +H + RGF FV FS D
Sbjct: 64 IFVGGVAWETTEESFSKHFGKYGA--ITDSVIMKD-KHTKMPRGFGFVTFS---DPSVID 117
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
K L+ + G RTV+V P E + + +F+ G+P E+ +RD Y
Sbjct: 118 KVLEDEHNIDG---RTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSY 174
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
G+V+ + + ST + + +GF+ F + ++ I+ ++ G +V+++
Sbjct: 175 GNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDL--GGKQVEIK 225
>gi|108863977|gb|ABG22355.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 361
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 98/196 (50%), Gaps = 10/196 (5%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
++ GKR + S+ + LF+GN+ ++WT + ++ +++ G GV +L+ + +R
Sbjct: 33 KLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVG-PGVLKADLMK-VSSANRNR 90
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
G+ FV + H A A Y R + F V++A+P + D + VK+V++
Sbjct: 91 GYGFVEYYNH--ACAEYARQEMSSPTFKLDSNAPTVSWADP-KNNDSVSTSQVKSVYVKN 147
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P + + Q++ + +G++ ++VL + + YGF+ F A + A+ N E
Sbjct: 148 LPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR-YGFVHFKDRSMA---MRALQNTER 203
Query: 196 SDGNSKVKLRARLSNP 211
+ + +V L L+ P
Sbjct: 204 YELDGQV-LDCSLAKP 218
>gi|357140381|ref|XP_003571747.1| PREDICTED: uncharacterized protein LOC100831046 isoform 2
[Brachypodium distachyon]
Length = 383
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 9/156 (5%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG + T+E + YG + + ++ D +H + RGF FV FS D
Sbjct: 47 IFVGGVAWETTEETFSKHFGKYGA--ITDSVIMKD-KHTKMPRGFGFVTFS---DPSVID 100
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
K L+ + G RTV+V P E + + +F+ G+P E+ +RD Y
Sbjct: 101 KVLEDEHNIDG---RTVEVKRTVPREEMSSKDGPKTRKIFVGGLPASLSEDDLRDHFSSY 157
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188
G V+ + + ST + + +GF+ F + ++ I+
Sbjct: 158 GKVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 193
>gi|291243919|ref|XP_002741849.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like
[Saccoglossus kowalevskii]
Length = 415
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 98/211 (46%), Gaps = 23/211 (10%)
Query: 19 GKRCGTAPSEDND-TLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSR 75
G+R + ++D+D LFVG + T++ +K+ K +G V+ I+ V+ G SR
Sbjct: 70 GERINASKNQDDDGKLFVGGLSWETTQKDLKEYFKKFGPVVDCTIKIDPVT-----GRSR 124
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
GF FV+F+ D + K LQ E + +P R + +F+ G
Sbjct: 125 GFGFVLFA---DGASVEKVLQPQ-------EHKLDGRIIDPKRAKARGGQPPITKIFVGG 174
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ P + EN++RD +G + + L + +T KR+ + FI+F ++ + I ++F
Sbjct: 175 LNPEYPENELRDYFTKFGAIKEVELPIDRATNKRRGFCFIEFEKEDS----VEEICKQQF 230
Query: 196 -SDGNSKVKLRARLSNPMPKTQAVKGGMSGG 225
GN+K +++ QAV + G
Sbjct: 231 HLLGNNKCEVKKATPKDQNTKQAVTAAVIPG 261
>gi|357614246|gb|EHJ68984.1| hypothetical protein KGM_20249 [Danaus plexippus]
Length = 260
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 58 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEP 116
G+ + + S + +RGF F+ + H A A +RL + V+G + V +A+P
Sbjct: 13 GLVEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADP 69
Query: 117 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 176
EPD + M+ VK +++ + E ++++ + YG+V R+ K KDY F+
Sbjct: 70 QEEPDEQTMSKVKVLYVRNLTQEITEEALKEEFERYGNVERV--------KKIKDYAFVH 121
Query: 177 FSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKG 220
F + AV + I+ KE +V L S+ K + ++
Sbjct: 122 FEDRDCAVKAMQEIDGKELGGARLEVSLAKPPSDKKKKEEILRA 165
>gi|341894933|gb|EGT50868.1| hypothetical protein CAEBREN_24646 [Caenorhabditis brenneri]
Length = 630
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 12/179 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGL-SRG 76
GK S N LF+GNI T +K+ I ++LK + EGV ++ + S ++ + +RG
Sbjct: 286 TGKPLKVNVSIANTRLFLGNIPKTKSKDEILEELKTHA-EGVTDVIVYSVPDNDKIRNRG 344
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F FV F H A +++ + + + + V V +AE EPD + M+ VK +++ +
Sbjct: 345 FCFVDFIDHKTASDIKRKIAQHKIRPFNAD--VYVDWAEHQEEPDEDTMSKVKVLYIRNI 402
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E ++ + K Y + R+ K KDY FI F+ E + + N KE
Sbjct: 403 KEAVTEEKLTEIFKEYASLDRV--------KKVKDYAFIHFNEREDCMKAMEQWNGKEL 453
>gi|149046824|gb|EDL99598.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_g [Rattus
norvegicus]
Length = 208
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + + ++ + G SRGF FV+F
Sbjct: 1 MFIGGL--SW--DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF--------- 47
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 48 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 106
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 107 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 162
Query: 211 PMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+ Q +GG +G R G G + S YG+ S R GH
Sbjct: 163 EQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGHQ 202
>gi|224049399|ref|XP_002190694.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Taeniopygia guttata]
gi|449499942|ref|XP_004175399.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Taeniopygia
guttata]
Length = 318
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 57 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---- 108
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 109 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 162
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 163 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 218
Query: 206 ARLS 209
+S
Sbjct: 219 VAMS 222
>gi|433344|gb|AAC50056.1| p37 AUF1 [Homo sapiens]
Length = 286
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 93/217 (42%), Gaps = 20/217 (9%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 73 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---- 124
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 125 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 178
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 179 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 234
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRG 242
+S + Q G G G R S G G
Sbjct: 235 VAMSKEQYQQQQQWGSRGGFAGRARGEFRNSSEAGEG 271
>gi|189234902|ref|XP_967881.2| PREDICTED: similar to APOBEC-1 complementation factor long
[Tribolium castaneum]
Length = 311
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 10/164 (6%)
Query: 21 RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 80
+ + S DN LF+GNI T I+ L+ Y VEG+ +I + ++ ++RGF FV
Sbjct: 115 KIAVSMSVDNRRLFIGNIPRHVTLSEIQSVLEKY-VEGIVDIIFYHEPYNDSINRGFIFV 173
Query: 81 MFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPH 139
F H A A ++L ++ ++G P + V +AEPL +P+I+ V ++L +P
Sbjct: 174 EFESHRLAAIARRQLSPGNLTIWGKP---IFVDWAEPLPVVNPQILKQVTKLYLSNLPMT 230
Query: 140 WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+++ + D I+ K ++ F+ F+ + A
Sbjct: 231 LSSEELKSFLCELLDPSHII-----KVHKINNFAFVHFTLRKYA 269
>gi|321478600|gb|EFX89557.1| hypothetical protein DAPPUDRAFT_24221 [Daphnia pulex]
Length = 290
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 11/176 (6%)
Query: 22 CGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM 81
G S DN LF+G I T ++E I+ +++ EGV + + S I + +RGFAFV
Sbjct: 113 IGVVKSIDNCRLFIGGIPKTKSREEIQGEMERL-TEGVTKVIVYSSITDKTKNRGFAFVE 171
Query: 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 141
+ H A A ++L + E + V +AEP E + ++M+ V +++ +
Sbjct: 172 YINHRAASKARRKLIPDRIQLWGKE--IAVDWAEPENEIEEDVMSQVTVLYVRNLSLTTT 229
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAK-RKDYGFIDFSTHEAAVACINAINNKEFS 196
E +R+ D N+ K +D+ FI FS+ E A + +N+ E +
Sbjct: 230 EQVLRELFNRVSD-------DNVQKLKMMRDFAFIHFSSREKAEKAMRNMNHTEIN 278
>gi|414588669|tpg|DAA39240.1| TPA: heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 506
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 89/182 (48%), Gaps = 12/182 (6%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K + GK+ +PS+ + LF+GN+ + WT + K +++ G GV + L ++ GL
Sbjct: 165 KDLKGKKIKVSPSQAKNRLFIGNVPHDWTHDDFKTAVEEVG-PGVLKVEL---MKAPGLD 220
Query: 75 R--GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVF 132
R G+ F+ + A A +++ P+ F V++A+P + A VK+++
Sbjct: 221 RNKGYGFIEYYNQACAEYAKQKMSTPE--FKLDTNAPTVSWADPKNANEATSTAQVKSLY 278
Query: 133 LDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 192
+ +P + Q++ + G++ ++V+ S + + YGF+ F A + A+ N
Sbjct: 279 VKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKSGHENR-YGFVHFKERYMA---MKALKN 334
Query: 193 KE 194
E
Sbjct: 335 TE 336
>gi|296082223|emb|CBI21228.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 18/206 (8%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV-------SDIQ 69
+ GK+ G PS D TLF GN+ W+ + K+ + V +++L + +
Sbjct: 35 VEGKKIGVVPSTDQTTLFFGNLPKDWSPDEF-DKMVCQAFQDVTSVDLAMPFGSGDTSLG 93
Query: 70 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 129
+ +RGFAFV FS H A A++ K D + G V EP E DPE +A +
Sbjct: 94 QKQQNRGFAFVKFSSHAAAARAHRMGSKSDFLLGDSWHPVVEWAEEP--EIDPEELAKIT 151
Query: 130 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 189
F+ +P E+ ++ +G V +++L++ + GF+ F+ I
Sbjct: 152 IAFVGNLPKDANEDYLKKLFGPFGKVEKVLLSKKGQSP----VGFVHFAKRSDLDNAIKE 207
Query: 190 INNKEFSDGNSK---VKLRARLSNPM 212
+N K G S+ KL+ ++ P+
Sbjct: 208 MNEKTVQ-GPSRGPAFKLQVAVAKPL 232
>gi|417410217|gb|JAA51585.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 379
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 104/231 (45%), Gaps = 26/231 (11%)
Query: 24 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMF 82
A + +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 164 AAAQREEWKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 219
Query: 83 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKE 142
K + D V E + +P R + VK +F+ G+ P E
Sbjct: 220 ----------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPE 269
Query: 143 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSK 201
+IR+ G+G+V I L + T KR+ + FI F E + I K++ + G SK
Sbjct: 270 EKIREYFGGFGEVESIELPMD-KTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSK 324
Query: 202 VKLRARLSNPMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+++ +S + Q A +GG +G R G G + S YG+ S R GH
Sbjct: 325 CEIKVAMSKEQYQQQQQWASRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGHQ 373
>gi|355561882|gb|EHH18514.1| hypothetical protein EGK_15134, partial [Macaca mulatta]
Length = 434
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 231 GKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFC 289
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA V + P
Sbjct: 290 FLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVYDDYYYYGP 346
Query: 138 PH 139
PH
Sbjct: 347 PH 348
>gi|410292490|gb|JAA24845.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 336
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 75 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---- 126
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 127 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 180
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 181 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 236
Query: 206 ARLS 209
+S
Sbjct: 237 VAMS 240
>gi|27709546|ref|XP_229073.1| PREDICTED: uncharacterized protein LOC302780 [Rattus norvegicus]
gi|109512293|ref|XP_001066404.1| PREDICTED: uncharacterized protein LOC302780 [Rattus norvegicus]
Length = 565
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 108/266 (40%), Gaps = 45/266 (16%)
Query: 23 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVM 81
T +D +F+G + K+ + + L +G E I+ + I + GLSRGF FV+
Sbjct: 25 ATKNQQDASKMFIGGLSQELNKQVLLEYLSKFG----EIIDFIIKIDPNTGLSRGFGFVL 80
Query: 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAF--AEPLREPDPEIMAHVKTVFLDGVPPH 139
F D+ K L+ D H K+ F A+ L P +K VF+ G+ P
Sbjct: 81 FK---DSSTVEKVLRVKD----HKVDGKKIEFKRAKALESQFP-----IKKVFVGGLNPR 128
Query: 140 WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF-------------------STH 180
E +IR +G + I L T +R+ +GFI + S
Sbjct: 129 MSEEKIRAYFGTFGQIEAIELPLCSDTQERRAFGFIKYMDENPVRKVLETRYHFIGSSRC 188
Query: 181 EAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQA-VKGGMSGGFRIGHGSSRTFSRY 239
E +A ++ S ++ K RAR + P + + +GG S F I S
Sbjct: 189 EVKMAFPKEYPARQLSKSKTRAKDRARTAVPAAELENHWRGGGSQNFHIMDNSDT--QEA 246
Query: 240 GRGSGRAGHHFNRAN----FQRGRGF 261
+ + RAG + +RAN RGF
Sbjct: 247 NQDAHRAGSYTSRANSDVTLSNARGF 272
>gi|115487230|ref|NP_001066102.1| Os12g0136200 [Oryza sativa Japonica Group]
gi|113648609|dbj|BAF29121.1| Os12g0136200, partial [Oryza sativa Japonica Group]
Length = 515
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 98/196 (50%), Gaps = 10/196 (5%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
++ GKR + S+ + LF+GN+ ++WT + ++ +++ G GV +L+ + +R
Sbjct: 187 KLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG-PGVLKADLMK-VSSANRNR 244
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
G+ FV + H A A Y R + F V++A+P + D + VK+V++
Sbjct: 245 GYGFVEYYNH--ACAEYARQEMSSPTFKLDSNAPTVSWADP-KNNDSASTSQVKSVYVKN 301
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P + + Q++ + +G++ ++VL + + YGF+ F A + A+ N E
Sbjct: 302 LPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR-YGFVHFKDRSMA---MRALQNTER 357
Query: 196 SDGNSKVKLRARLSNP 211
+ + +V L L+ P
Sbjct: 358 YELDGQV-LDCSLAKP 372
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 21/152 (13%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
++VG I + + E +K+ + G E VE V ++ + SRG+AFV F A+ A
Sbjct: 126 VYVGGISSDVSSEDLKRLCEPVG-EVVE----VRMMRGKDDSRGYAFVNFRTKGLALKAV 180
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
K L + + ++V+ ++ + +F+ VP W ++ R ++
Sbjct: 181 KELNNAKLK----GKRIRVSSSQAKNK-----------LFIGNVPHSWTDDDFRKVVEEV 225
Query: 153 GD-VIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
G V++ L + S + + YGF+++ H A
Sbjct: 226 GPGVLKADLMKVSSANRNRGYGFVEYYNHACA 257
>gi|108863978|gb|ABA91387.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 501
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 98/196 (50%), Gaps = 10/196 (5%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
++ GKR + S+ + LF+GN+ ++WT + ++ +++ G GV +L+ + +R
Sbjct: 173 KLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVG-PGVLKADLMK-VSSANRNR 230
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
G+ FV + H A A Y R + F V++A+P + D + VK+V++
Sbjct: 231 GYGFVEYYNH--ACAEYARQEMSSPTFKLDSNAPTVSWADP-KNNDSVSTSQVKSVYVKN 287
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P + + Q++ + +G++ ++VL + + YGF+ F A + A+ N E
Sbjct: 288 LPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR-YGFVHFKDRSMA---MRALQNTER 343
Query: 196 SDGNSKVKLRARLSNP 211
+ + +V L L+ P
Sbjct: 344 YELDGQV-LDCSLAKP 358
>gi|9588100|dbj|BAB03467.1| RNA binding protein p40 AUF1 [Rattus norvegicus]
Length = 304
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 100/223 (44%), Gaps = 27/223 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 90
+F+G + TK+ +K +G V+ ++ ++ G SRGF FV+F
Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPIT-----GRSRGFGFVLF-------- 143
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
K + D V E + +P R + VK +F+ G+ P E +IR+
Sbjct: 144 --KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFG 201
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
G+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 202 GFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 257
Query: 210 NPMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+ Q +GG +G R G G + S YG+ S R GH
Sbjct: 258 KEQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGHQ 298
>gi|127139464|ref|NP_001076009.1| heterogeneous nuclear ribonucleoprotein D0 isoform c [Rattus
norvegicus]
gi|149046817|gb|EDL99591.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_b [Rattus
norvegicus]
Length = 304
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + + ++ + G SRGF FV+F
Sbjct: 97 MFIGGL--SW--DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF--------- 143
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 144 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 202
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 203 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 258
Query: 211 PMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 249
+ Q +GG +G R G G + S YG+ S R GH
Sbjct: 259 EQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGHQ 298
>gi|346703741|emb|CBX24409.1| hypothetical_protein [Oryza glaberrima]
Length = 502
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 98/196 (50%), Gaps = 10/196 (5%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
++ GKR + S+ + LF+GN+ ++WT + ++ +++ G GV +L+ + +R
Sbjct: 174 KLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG-PGVLKADLMK-VSSANRNR 231
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
G+ FV + H A A Y R + F V++A+P + D + VK+V++
Sbjct: 232 GYGFVEYYNH--ACAEYARQEMSSPTFKLDSNAPTVSWADP-KNNDSASTSQVKSVYVKN 288
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P + + Q++ + +G++ ++VL + + YGF+ F A + A+ N E
Sbjct: 289 LPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR-YGFVHFKDRSMA---MRALQNTER 344
Query: 196 SDGNSKVKLRARLSNP 211
+ + +V L L+ P
Sbjct: 345 YELDGQV-LDCSLAKP 359
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 21/152 (13%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
++VG I + + E +K+ + G E VE V ++ + SRG+AFV F A+ A
Sbjct: 113 VYVGGISSDVSSEDLKRLCEPVG-EVVE----VRMMRGKDDSRGYAFVNFRTKGLALKAV 167
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
K L + + ++V+ ++ + +F+ VP W ++ R ++
Sbjct: 168 KELNNAKLKG----KRIRVSSSQAKNK-----------LFIGNVPHSWTDDDFRKVVEEV 212
Query: 153 GD-VIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
G V++ L + S + + YGF+++ H A
Sbjct: 213 GPGVLKADLMKVSSANRNRGYGFVEYYNHACA 244
>gi|108862165|gb|ABA95754.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108862166|gb|ABG21876.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 502
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 98/196 (50%), Gaps = 10/196 (5%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
++ GKR + S+ + LF+GN+ ++WT + ++ +++ G GV +L+ + +R
Sbjct: 174 KLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG-PGVLKADLMK-VSSANRNR 231
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
G+ FV + H A A Y R + F V++A+P + D + VK+V++
Sbjct: 232 GYGFVEYYNH--ACAEYARQEMSSPTFKLDSNAPTVSWADP-KNNDSASTSQVKSVYVKN 288
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P + + Q++ + +G++ ++VL + + YGF+ F A + A+ N E
Sbjct: 289 LPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR-YGFVHFKDRSMA---MRALQNTER 344
Query: 196 SDGNSKVKLRARLSNP 211
+ + +V L L+ P
Sbjct: 345 YELDGQV-LDCSLAKP 359
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 21/152 (13%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
++VG I + + E +K+ + G E VE V ++ + SRG+AFV F A+ A
Sbjct: 113 VYVGGISSDVSSEDLKRLCEPVG-EVVE----VRMMRGKDDSRGYAFVNFRTKGLALKAV 167
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
K L + + ++V+ ++ + +F+ VP W ++ R ++
Sbjct: 168 KELNNAKLKG----KRIRVSSSQAKNK-----------LFIGNVPHSWTDDDFRKVVEEV 212
Query: 153 GD-VIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
G V++ L + S + + YGF+++ H A
Sbjct: 213 GPGVLKADLMKVSSANRNRGYGFVEYYNHACA 244
>gi|340383337|ref|XP_003390174.1| PREDICTED: ELAV-like protein 3-like [Amphimedon queenslandica]
Length = 392
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 18/195 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
L V + T T+E +KQ +GV V + L+ D + G+S G+ FV + +A A
Sbjct: 26 LIVNYLPQTLTEEGLKQLFSQFGV--VLSCKLIKD-KSSGISLGYGFVNYGSAEEAEHAI 82
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+++ + +T+KV++A P + V++ +PP ++ + Y
Sbjct: 83 QKMNGTTL----ESKTLKVSYARP-----SSVAIKNANVYVANLPPQLSLTELDALFQPY 133
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP- 211
G +I + + T + GF+ F + A I A+N K+ G L + +NP
Sbjct: 134 GTIITSKVLTDEDTGAGRGVGFVRFDKYTQAEVAIAALNGKQLVGGTQ--PLLVKFANPP 191
Query: 212 ---MPKTQAVKGGMS 223
P T V GG++
Sbjct: 192 KAATPLTGTVPGGLA 206
>gi|410903806|ref|XP_003965384.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like isoform
2 [Takifugu rubripes]
Length = 320
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 101/237 (42%), Gaps = 30/237 (12%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +FVG + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 53 EDEGKMFVGGL--SW--DTTKKDLKDYFCKYGEVVDCTLKLDPITGRSRGFGFVLF---- 104
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + + V E + +P + + VK +F+ G+ P E ++R
Sbjct: 105 ------KEPESVEKVASQKEHKLNGKVIDPKKAKAMKGKEPVKKIFVGGLSPDTPEEKVR 158
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206
+ +G+V I L T KR+ + FI F E V CI + K + G SK +++
Sbjct: 159 EYFGAFGEVESIELPMETKTNKRRGFCFITFK-EEEPVKCI--MEKKFHNIGLSKCEIKV 215
Query: 207 RLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFN-RANFQRGRGFY 262
+S + Q GG G +S RG G + F+ N+ +G G Y
Sbjct: 216 AVSKEQYQQQQYWGGRGG-----------YSSRARGRGGGWNIFSPNQNWNQGYGNY 261
>gi|449499935|ref|XP_004175398.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Taeniopygia
guttata]
Length = 340
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 96/222 (43%), Gaps = 33/222 (14%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 57 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---- 108
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 109 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 162
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 163 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 218
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 247
+S Q + G GGF GR GR+G
Sbjct: 219 VAMSKEQ-YQQQQQWGSRGGF------------VGRARGRSG 247
>gi|348536212|ref|XP_003455591.1| PREDICTED: probable RNA-binding protein 46-like [Oreochromis
niloticus]
Length = 574
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 15/189 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G+I K+ + +++K +GV + + + +RGFA
Sbjct: 145 GKFIGVCVSLDNCRLFIGSIPKDKRKDEVIEEMKKV-TDGVVDAIVYPSTTDKNKNRGFA 203
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH +++V +AEP ++ D E+M V+ +++ +
Sbjct: 204 FVEYESHKAAAMARRKLIPGTFQLWGH---SIQVDWAEPEKDVDEEVMQRVRVLYVRNLM 260
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E +R + + G V R+ K DY FI + + A+ ++ +N
Sbjct: 261 LETSEETLRQEFSRFKPGCVERV--------KKLSDYAFIHYRSRSDALTALSLMNGAHI 312
Query: 196 SDGNSKVKL 204
+V L
Sbjct: 313 DGAAVEVTL 321
>gi|870743|dbj|BAA09522.1| heterogeneous nuclear ribonucleoprotein D (hnRNP D) [Homo sapiens]
Length = 267
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 6 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---- 57
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 58 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 111
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 112 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 167
Query: 206 ARLS 209
+S
Sbjct: 168 VAMS 171
>gi|410903804|ref|XP_003965383.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like isoform
1 [Takifugu rubripes]
Length = 314
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 29/227 (12%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +FVG + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 53 EDEGKMFVGGL--SW--DTTKKDLKDYFCKYGEVVDCTLKLDPITGRSRGFGFVLF---- 104
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + + V E + +P + + VK +F+ G+ P E ++R
Sbjct: 105 ------KEPESVEKVASQKEHKLNGKVIDPKKAKAMKGKEPVKKIFVGGLSPDTPEEKVR 158
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206
+ +G+V I L T KR+ + FI F E V CI + K + G SK +++
Sbjct: 159 EYFGAFGEVESIELPMETKTNKRRGFCFITFK-EEEPVKCI--MEKKFHNIGLSKCEIKV 215
Query: 207 RLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA 253
+S + Q GG G +S RG G ++N+
Sbjct: 216 AVSKEQYQQQQYWGGRGG-----------YSSRARGRGGPNQNWNQG 251
>gi|194390332|dbj|BAG61935.1| unnamed protein product [Homo sapiens]
Length = 303
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 42 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---- 93
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 94 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 147
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 148 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 203
Query: 206 ARLS 209
+S
Sbjct: 204 VAMS 207
>gi|242084538|ref|XP_002442694.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
gi|241943387|gb|EES16532.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
Length = 491
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 110/235 (46%), Gaps = 16/235 (6%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K + GK+ + S+ + LF+GNI WT++ K+ +++ G GV +NLV + + +
Sbjct: 157 KDLKGKKIRVSSSQAKNRLFIGNIPYKWTEDIFKEAVEEVG-PGVVKVNLVKAPRSD-TN 214
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 134
+G+ F+ + A A K++ P+ F + V++A+ + + VK++++
Sbjct: 215 KGYGFIEYYNQACAEYAKKKMSTPE--FKLDKNAPNVSWADTKNGGESASTSQVKSLYIK 272
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+P + Q++ + G+V ++V+ + + + YGF+ F A+ + E
Sbjct: 273 NLPKTVTQEQLKRLFEHLGEVTKVVIPPAKAGHENR-YGFVHFKERSMAMKALKDTERYE 331
Query: 195 FSDGNSKVKLRARLSNPMPK-----TQAVKGG--MSGGFRIGHGSSRTFSRYGRG 242
DG+ L L+ P+ + T KGG + +G+G ++ G G
Sbjct: 332 L-DGHL---LDCSLAKPLAEKKDDTTSVPKGGPLLPSYTPLGYGLMGAYNPLGNG 382
>gi|395834195|ref|XP_003790097.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 3
[Otolemur garnettii]
Length = 336
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 75 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---- 126
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 127 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 180
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 181 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 236
Query: 206 ARLS 209
+S
Sbjct: 237 VAMS 240
>gi|242067347|ref|XP_002448950.1| hypothetical protein SORBIDRAFT_05g002300 [Sorghum bicolor]
gi|241934793|gb|EES07938.1| hypothetical protein SORBIDRAFT_05g002300 [Sorghum bicolor]
Length = 498
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 8/180 (4%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K + GK+ + S+ + LF+GN+ WT + K +++ G GV ++L+ G +
Sbjct: 165 KDLKGKKIKVSSSQAKNRLFIGNVPRDWTPDDFKTAVEEVG-PGVLQVDLMK-APGSGRN 222
Query: 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 134
+G+ F+ + A A +++ P+ F V++A+P + A VK++++
Sbjct: 223 KGYGFIEYYNQACAEYAKQKMSTPE--FKLDTNAPTVSWADPKNANEATSTAQVKSLYVK 280
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+P + Q++ + G++ ++V+ S + + YGF+ F A + A+ N E
Sbjct: 281 NIPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENR-YGFVHFKERSMA---MKALKNTE 336
>gi|133256|sp|P21522.1|ROA1_SCHAM RecName: Full=Heterogeneous nuclear ribonucleoprotein A1, A2/B1
homolog
gi|10107|emb|CAA38481.1| mammalian A1, A2 /B1 hnRNP homologue [Schistocerca americana]
Length = 342
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 11/151 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS-CHVDAMAA 91
LF+G + T E++KQ + +G + ++ ++ D + + SRGF F+ +S H+ A
Sbjct: 19 LFIGGLDYRTTDESLKQHFEQWG--EIVDVVVMKDPKTK-RSRGFGFITYSRAHMVDDAQ 75
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V P E PE A VK +F+ G+ +EN +RD K
Sbjct: 76 NARPHKVDGRVVEPKRAV------PRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFK 129
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 181
YG V+ + + T K++ + F++F ++
Sbjct: 130 QYGTVVSAAIVVDKETRKKRGFAFVEFDDYD 160
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 21/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFG-----NILSCKVAQDESGASKGYGFVHYETDEAAAQA 205
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L + V GH P++ + F E + A+ +++ +P E +
Sbjct: 206 IKHVNGMLLNEKKVFVGHHIPKKDRQSKFEE--------MKANFTNIYVKNIPVEATEEE 257
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R+ + +GDV LAR+ T K + +GF++F HE A ++ +N K+F
Sbjct: 258 FRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHEHAATAVDELNGKDF 308
>gi|29371361|gb|AAO72701.1| putative RNA-binding protein [Oryza sativa Japonica Group]
Length = 476
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 98/196 (50%), Gaps = 10/196 (5%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
++ GKR + S+ + LF+GN+ ++WT + ++ +++ G GV +L+ + +R
Sbjct: 186 KLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG-PGVLKADLMK-VSSANRNR 243
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
G+ FV + H A A Y R + F V++A+P + D + VK+V++
Sbjct: 244 GYGFVEYYNH--ACAEYARQEMSSPTFKLDSNAPTVSWADP-KNNDSASTSQVKSVYVKN 300
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P + + Q++ + +G++ ++VL + + YGF+ F A + A+ N E
Sbjct: 301 LPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR-YGFVHFKDRSMA---MRALQNTER 356
Query: 196 SDGNSKVKLRARLSNP 211
+ + +V L L+ P
Sbjct: 357 YELDGQV-LDCSLAKP 371
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 100/257 (38%), Gaps = 43/257 (16%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
++VG I + + E +K+ + G E VE V ++ + SRG+AFV F A+ A
Sbjct: 125 VYVGGISSDVSSEDLKRLCEPVG-EVVE----VRMMRGKDDSRGYAFVNFRTKGLALKAV 179
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
K L + + ++V+ ++ + +F+ VP W ++ R ++
Sbjct: 180 KELNNAKL----KGKRIRVSSSQAKNK-----------LFIGNVPHSWTDDDFRKVVEEV 224
Query: 153 GD-VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS-DGNSKVKLRARLSN 210
G V++ L + S + + YGF+++ H A +++ F D N+ A N
Sbjct: 225 GPGVLKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 284
Query: 211 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSS 270
+S+ S Y + + N Q R F HG
Sbjct: 285 ----------------NDSASTSQVKSVYVKNLPK-----NVTQAQLKRLFEHHGEIEKV 323
Query: 271 RMGPTEYDFDNRYTEFH 287
+ P+ DNRY H
Sbjct: 324 VLPPSRGGHDNRYGFVH 340
>gi|301753349|ref|XP_002912535.1| PREDICTED: hypothetical protein LOC100472152 [Ailuropoda
melanoleuca]
Length = 642
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 20/180 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 386 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 432
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 433 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 491
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 492 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 547
>gi|291401535|ref|XP_002717031.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D [Oryctolagus
cuniculus]
Length = 448
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 20/190 (10%)
Query: 23 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVM 81
A + +F+G + +W + K+ LKDY + E ++ + G SRGF FV+
Sbjct: 182 AAAAQREEWKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 237
Query: 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 141
F K + D V E + +P R + VK +F+ G+ P
Sbjct: 238 F----------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTP 287
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNS 200
E +IR+ G+G+V I L + T KR+ + FI F E + I K++ + G S
Sbjct: 288 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLS 343
Query: 201 KVKLRARLSN 210
K +++ +S
Sbjct: 344 KCEIKVAMSK 353
>gi|170034902|ref|XP_001845311.1| heterogeneous nuclear ribonucleoprotein r [Culex quinquefasciatus]
gi|167876604|gb|EDS39987.1| heterogeneous nuclear ribonucleoprotein r [Culex quinquefasciatus]
Length = 542
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 22/190 (11%)
Query: 36 GNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-----HEGLSRGFAFVMFSCHVDAMA 90
GN C + + K +D + E + D++ G +RG+AFV F+ A
Sbjct: 176 GNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAACN 235
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
A + + D++ V +A+P EPD + M+ VK +++ + E ++++ +
Sbjct: 236 AVREVWGCDII---------VDWADPQEEPDEQTMSKVKVLYVRNLTQDTSEEKLKESFE 286
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 210
+G V R+ K KDY F+ F + AV + ++ K+ + +V L S+
Sbjct: 287 AFGKVERV--------KKIKDYAFVHFEDRDHAVNAMKDLDGKDINGSAIEVSLAKPPSD 338
Query: 211 PMPKTQAVKG 220
K + ++
Sbjct: 339 KKKKEEILRA 348
>gi|443692084|gb|ELT93758.1| hypothetical protein CAPTEDRAFT_170758 [Capitella teleta]
Length = 238
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 17/165 (10%)
Query: 23 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVE--GVENINLVSDIQHEGLSRGFAFV 80
G+ E++ +FVG + +W E + +KDY + V + L +D Q+ G SRGF FV
Sbjct: 55 GSCEDEESRKIFVGGL--SW--ETTVKDMKDYFSKFGEVTDATLKTD-QNTGRSRGFGFV 109
Query: 81 MFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHW 140
F VD+ + +++ K A A P REP VK +F+ G+ P
Sbjct: 110 TF---VDSTCVNRVIEQTQHTLHGKNIDPKRAKARPGREP-------VKKIFVGGLDPEV 159
Query: 141 KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 185
E++IR YG V + L + S +R+ + F+ F T EA A
Sbjct: 160 PEDEIRQHFSKYGKVEEVELPFDRSKNQRRFFCFVSFDTGEAVDA 204
>gi|14110417|ref|NP_112737.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Homo sapiens]
gi|332819428|ref|XP_003310368.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Pan
troglodytes]
gi|395735088|ref|XP_003776521.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 4
[Pongo abelii]
gi|402869393|ref|XP_003898747.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 3
[Papio anubis]
gi|2815614|gb|AAC23476.1| heterogeneous nuclear ribonucleoprotein D [Homo sapiens]
gi|119626279|gb|EAX05874.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_c [Homo sapiens]
gi|119626283|gb|EAX05878.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_c [Homo sapiens]
gi|119626288|gb|EAX05883.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_c [Homo sapiens]
gi|158258851|dbj|BAF85396.1| unnamed protein product [Homo sapiens]
gi|380783615|gb|AFE63683.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Macaca
mulatta]
gi|383417961|gb|AFH32194.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Macaca
mulatta]
gi|384940048|gb|AFI33629.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Macaca
mulatta]
Length = 336
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 75 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---- 126
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 127 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 180
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 181 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 236
Query: 206 ARLS 209
+S
Sbjct: 237 VAMS 240
>gi|410351153|gb|JAA42180.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 337
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 76 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---- 127
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 128 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 181
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 182 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 237
Query: 206 ARLS 209
+S
Sbjct: 238 VAMS 241
>gi|313239224|emb|CBY14179.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE----GL--SRGFAFV 80
S+ N+ LFVG+I T TK+ I + + G+ ++ L ++ + GL +RGF F+
Sbjct: 245 SQPNNRLFVGSIPKTKTKQEILDEFSKH-TTGLTDVILYYQVEEKNKGSGLQKNRGFCFL 303
Query: 81 MFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHW 140
+ H A A +RL V + V V +A+P+ P +IM VK +++ +
Sbjct: 304 EYETHQAASQARRRLLSGRVKAWN-NLIVTVDWADPINTPADDIMDKVKVLYVKNLATCV 362
Query: 141 KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191
E+ + +G++ ++ K KDY F+ F + A + + +N
Sbjct: 363 SEDIVSQTFAAFGEIEKV--------KKLKDYAFVHFKNRDEARSAMTELN 405
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 21/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 152 VFIKNLDTAIDNKALHDTFAAFG-----NILSCKVAQDESGASKGYGFVHYETDEAASQA 206
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L + V GH P++ + F E + A+ +++ +P + +
Sbjct: 207 IKHVNGMLLNEKKVFVGHHIPKKDRQSKFEE--------MKANFTNIYVKNIPVEATDEE 258
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R+ + +GDV LAR+ T K + +GF++F HE A ++ +N K+F
Sbjct: 259 FRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHEHAATAVDELNGKDF 309
>gi|344284992|ref|XP_003414248.1| PREDICTED: hypothetical protein LOC100654996 [Loxodonta africana]
Length = 595
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 20/180 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 339 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 385
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 386 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 444
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 445 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 500
>gi|290985168|ref|XP_002675298.1| hypothetical protein NAEGRDRAFT_80404 [Naegleria gruberi]
gi|284088893|gb|EFC42554.1| hypothetical protein NAEGRDRAFT_80404 [Naegleria gruberi]
Length = 641
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 36 GNICNTWTK--------EAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
++CN + K E +++ +G + + ++++D E S GF FV FS +
Sbjct: 119 SDLCNVFVKYLPPHFSDEDLRELFTPFG--EIVSCHVMTDKTRENSSLGFGFVRFSNENE 176
Query: 88 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRD 147
A A + L + + G+ K++ + +E D + +F+ +PPH+ E ++
Sbjct: 177 AQDAIQGLNEKSI--GNKRLLCKLSNSAGNKEKDQQ-----SNLFIRNIPPHYDEETLKQ 229
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201
+ +G + ++ + +++T + K YGF F + A++ I +N + D +SK
Sbjct: 230 AFEVFGPISKVKIMIDINTQRSKCYGFCKFENRKDALSAIQKMNGSKLDDDSSK 283
>gi|414588668|tpg|DAA39239.1| TPA: hypothetical protein ZEAMMB73_667091 [Zea mays]
Length = 445
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 89/182 (48%), Gaps = 12/182 (6%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K + GK+ +PS+ + LF+GN+ + WT + K +++ G GV + L ++ GL
Sbjct: 165 KDLKGKKIKVSPSQAKNRLFIGNVPHDWTHDDFKTAVEEVG-PGVLKVEL---MKAPGLD 220
Query: 75 R--GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVF 132
R G+ F+ + A A +++ P+ F V++A+P + A VK+++
Sbjct: 221 RNKGYGFIEYYNQACAEYAKQKMSTPE--FKLDTNAPTVSWADPKNANEATSTAQVKSLY 278
Query: 133 LDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 192
+ +P + Q++ + G++ ++V+ S + + YGF+ F A + A+ N
Sbjct: 279 VKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKSGHENR-YGFVHFKERYMA---MKALKN 334
Query: 193 KE 194
E
Sbjct: 335 TE 336
>gi|116256518|ref|NP_001070734.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Mus musculus]
gi|148688364|gb|EDL20311.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_a [Mus
musculus]
Length = 336
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 75 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---- 126
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 127 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 180
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 181 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 236
Query: 206 ARLS 209
+S
Sbjct: 237 VAMS 240
>gi|403263354|ref|XP_003924002.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 3
[Saimiri boliviensis boliviensis]
Length = 336
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 75 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---- 126
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 127 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 180
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 181 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 236
Query: 206 ARLS 209
+S
Sbjct: 237 VAMS 240
>gi|74001707|ref|XP_535627.2| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Canis lupus familiaris]
Length = 336
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 75 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---- 126
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 127 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 180
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 181 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 236
Query: 206 ARLS 209
+S
Sbjct: 237 VAMS 240
>gi|226532808|ref|NP_001151969.1| LOC100285606 [Zea mays]
gi|195651435|gb|ACG45185.1| heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 469
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 89/182 (48%), Gaps = 12/182 (6%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74
K + GK+ +PS+ + LF+GN+ + WT + K +++ G GV + L ++ GL
Sbjct: 164 KDLKGKKIKVSPSQAKNRLFIGNVPHDWTHDDFKTAVEEVG-PGVLKVEL---MKAPGLD 219
Query: 75 R--GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVF 132
R G+ F+ + A A +++ P+ F V++A+P + A VK+++
Sbjct: 220 RNKGYGFIEYYNQACAEYAKQKMSTPE--FKLDTNAPTVSWADPKNANEATSTAQVKSLY 277
Query: 133 LDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 192
+ +P + Q++ + G++ ++V+ S + + YGF+ F A + A+ N
Sbjct: 278 VKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKSGHENR-YGFVHFKERYMA---MKALKN 333
Query: 193 KE 194
E
Sbjct: 334 TE 335
>gi|363807276|ref|NP_001242362.1| uncharacterized protein LOC100793209 [Glycine max]
gi|255636483|gb|ACU18580.1| unknown [Glycine max]
Length = 377
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 10/171 (5%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+F+G + T I Q +K +G G +++ + G RGF F+ ++ D
Sbjct: 44 IFIGGLARETT---IAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYA---DPSVVD 97
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
K +++P V+ G + V++ P R K +F+ G+P + E++ RD Y
Sbjct: 98 KVIEEPHVING---KQVEIKRTIP-RGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRY 153
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203
G+V + R+ ST + + +GFI F + EA ++ N +F+ ++K
Sbjct: 154 GEVKDHQIMRDHSTNRSRGFGFITFESEEAVDDLLSMGNKIDFAGAQVEIK 204
>gi|224135041|ref|XP_002327552.1| predicted protein [Populus trichocarpa]
gi|222836106|gb|EEE74527.1| predicted protein [Populus trichocarpa]
Length = 160
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 9/151 (5%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LFVG + T+E YG E ++++ + +H G RGF FV F+ D A
Sbjct: 2 LFVGGVSWETTEETFTNYFSKYG-EVMDSVIMTD--RHSGRPRGFGFVTFA---DPAVAD 55
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+ L++ V+ G R V+V P + D + + K +F+ G+PP E+++++ Y
Sbjct: 56 RVLEEDHVIDG---RAVEVKRTVPREDMDVKGVTRTKKIFVGGIPPSLTEDELKEYFSVY 112
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
G ++ + + T + + +GF+ F +A
Sbjct: 113 GSIVDHQIMLDHKTGRSRGFGFVTFDIEDAV 143
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 21/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFG-----NILSCKVAQDENGNSKGYGFVHYETDEAASQA 205
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L + V GH P++ + F E+ A+ +++ + P +++
Sbjct: 206 IKHVNGMLLNEKKVYVGHHIPKKDRQSKF--------DEMKANFTNIYVKNINPEVTDDE 257
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R + YGDV LAR+ T K + +GF++F++HE A + +N KEF
Sbjct: 258 FRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEF 308
>gi|327273004|ref|XP_003221273.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like [Anolis
carolinensis]
Length = 334
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
E N +F+G + +W + K+ LKDY + E ++ + G SRGF F++F
Sbjct: 74 EFNGKMFIGGL--SW--DTTKKDLKDYFTKFGEVVDCTLKLDPITGRSRGFGFILF---- 125
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + +K +F+ G+ P E +IR
Sbjct: 126 ------KEAESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPIKKIFVGGLSPDTPEEKIR 179
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 180 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKDEEP----VKKIMEKKYHNVGLSKCEIK 235
Query: 206 ARLS 209
+S
Sbjct: 236 VAMS 239
>gi|181914|gb|AAA35781.1| DNA-binding protein [Homo sapiens]
Length = 328
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 102/224 (45%), Gaps = 26/224 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 78 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 124
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 125 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 183
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ FI F E + I K++ + G SK +++ +S
Sbjct: 184 FGEVESIELPMDNKTNKRRGLCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 239
Query: 211 PMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFN 251
+ Q +GG +G R G G + S YG+ S RAG H N
Sbjct: 240 EQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVS-RAGGHQN 280
>gi|330928516|ref|XP_003302299.1| hypothetical protein PTT_14050 [Pyrenophora teres f. teres 0-1]
gi|311322459|gb|EFQ89618.1| hypothetical protein PTT_14050 [Pyrenophora teres f. teres 0-1]
Length = 403
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 25 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC 84
A E LFVGN+ ++ ++++ + +G + +++D + G ++GF +V FS
Sbjct: 211 AAEEGIKNLFVGNMSWNIDEDWLRREFEGFGE--IVGCRVITD-RETGRAKGFGYVEFSN 267
Query: 85 HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK-----------TVFL 133
DA A K + + + R + V F+ P +PD A T+FL
Sbjct: 268 AADAAKAQKEMHE----YELDGRQLNVDFSTPRAKPDANGGARANKYGDKRSPPSNTLFL 323
Query: 134 DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
V I++ YG + R+ L + T K +G++DFS+ + A A + A+N +
Sbjct: 324 GNVSFECSNESIQEVFAEYGSITRVSLPTDRDTGALKGFGYVDFSSQQEATAALEALNGQ 383
Query: 194 EF 195
+
Sbjct: 384 DI 385
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAM 89
++TLF+GN+ + E+I++ +YG + ++L +D + G +GF +V FS +A
Sbjct: 318 SNTLFLGNVSFECSNESIQEVFAEYG--SITRVSLPTD-RDTGALKGFGYVDFSSQQEAT 374
Query: 90 AAYKRLQKPDVVFGHPERTVKVAFAEP 116
AA + L D+ R +++ +A P
Sbjct: 375 AALEALNGQDIGG----RAIRIDYATP 397
>gi|127139089|ref|NP_001076008.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Rattus
norvegicus]
gi|149046818|gb|EDL99592.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_c [Rattus
norvegicus]
gi|149046819|gb|EDL99593.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_c [Rattus
norvegicus]
Length = 334
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + + ++ + G SRGF FV+F
Sbjct: 73 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF---- 124
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 125 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 178
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 179 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 234
Query: 206 ARLS 209
+S
Sbjct: 235 VAMS 238
>gi|387016396|gb|AFJ50317.1| Heterogeneous nuclear ribonucleoprotein D0 isoform b [Crotalus
adamanteus]
Length = 330
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 20/184 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +FVG + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 69 EDEGKMFVGGL--SW--DTTKKDLKDYFTKFGEVVDCTLKLDPITGRSRGFGFVLF---- 120
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + + V E + +P R + VK +F+ G+ P E +IR
Sbjct: 121 ------KESESVEKVTDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 174
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F EA + I K++ + G SK +++
Sbjct: 175 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKDEEA----VKKIMEKKYHNVGLSKCEIK 230
Query: 206 ARLS 209
+S
Sbjct: 231 VAMS 234
>gi|348524054|ref|XP_003449538.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Oreochromis
niloticus]
Length = 604
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 122/299 (40%), Gaps = 41/299 (13%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K +GV ++ + + +RGFA
Sbjct: 125 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TDGVVDVIVYPSAADKSKNRGFA 183
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GH + V +AEP E D + MA VK +++ +
Sbjct: 184 FVEYESHRAAAMARRKLLPGRIQLWGH---AIAVDWAEPEVEVDEDTMATVKILYVRNLM 240
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ F+ E A+ + A+N K
Sbjct: 241 LQTTEETIEKEFNSLKPGAVERV--------KKIRDYAFVHFTQREDAINAMKALNGK-V 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF 255
DG+ + L+ P+ K V+ G R G ++ Y G ++ +
Sbjct: 292 VDGSP---IEVTLAKPVDKDSYVRYTRGTGGRGGSLLQTDYTSY-----TLGQMYDPSAA 343
Query: 256 QRGRGFYQHGRNHSSRMGPTEYDFDNRYTEFHGRQFI---------------GRGGRSF 299
G + + +++ P ++ F GR I GRG ++
Sbjct: 344 YLGAPVFYAPQAYTAI--PAQFRFPAAKAHVGGRGLIRTPSVRGAAGVRGLGGRGYLAY 400
>gi|413954078|gb|AFW86727.1| hypothetical protein ZEAMMB73_661369 [Zea mays]
Length = 278
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 10/151 (6%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG + T+E + + YG + + ++ D +H + RGF FV FS D
Sbjct: 95 VFVGGVAWETTEETFTKHFQKYG--AITDSVIMKD-KHTRMPRGFGFVTFS---DPSVLD 148
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+ L+ V+ G RTV+V P +E + K +F+ G+PP E+++++ Y
Sbjct: 149 RVLEDEHVIDG---RTVEVKRTVP-KELSSKDGPKTKKIFVGGIPPSLTEDKLKEHFSSY 204
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
G V+ + + ST + + +GF+ F + +A
Sbjct: 205 GKVVEHQIMLDHSTGRSRGFGFVTFESEDAV 235
>gi|9588098|dbj|BAB03466.1| RNA binding protein p42 AUF1 [Rattus norvegicus]
Length = 334
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + + ++ + G SRGF FV+F
Sbjct: 73 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF---- 124
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 125 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 178
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 179 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 234
Query: 206 ARLS 209
+S
Sbjct: 235 VAMS 238
>gi|213408691|ref|XP_002175116.1| splicing factor U2AF subunit [Schizosaccharomyces japonicus yFS275]
gi|212003163|gb|EEB08823.1| splicing factor U2AF subunit [Schizosaccharomyces japonicus yFS275]
Length = 511
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 105 PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM 164
P+ + +VA P + + +++ V++ +P + E+QI + +K +G++ + LA+N
Sbjct: 276 PQISSEVAQKRPKNDLNQKVLDSADKVYIGSLPLYLNEDQISELLKPFGELQSLFLAKNS 335
Query: 165 STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR-LSNPMPKTQAVKGGMS 223
+ + Y F ++ + E+A A + +NN EF D V+ + P+P ++V GM+
Sbjct: 336 ADMTSRGYAFCEYISSESATAAVQGLNNMEFGDTRLMVQFACVGIQQPVPSPRSV--GMA 393
Query: 224 GGFRIGHGSS 233
+ S+
Sbjct: 394 ALIELSKSST 403
>gi|410927412|ref|XP_003977143.1| PREDICTED: probable RNA-binding protein 46-like [Takifugu rubripes]
Length = 484
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 13/188 (6%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G+I TK+ + ++K +GV ++ + + +RGFA
Sbjct: 144 GKFIGVCVSLDNCRLFIGSIPKEKTKDEVMAEMKKV-TDGVVDVIMYPSSTDKSRNRGFA 202
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
FV + H A A ++L F ++++V +AEP ++ + E+M V+ +++ +
Sbjct: 203 FVEYKSHKAAAMARRKLIPG--TFQLWGQSIQVDWAEPEKDVEEEVMQRVRVIYVRNLML 260
Query: 139 HWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + + + G V R+ K DY F+ + E A+A + +N +
Sbjct: 261 STTEETLFQEFSHFKPGSVERV--------KKLTDYAFVHYYCREDALAALAIMNGVQID 312
Query: 197 DGNSKVKL 204
+V L
Sbjct: 313 GATIEVML 320
>gi|260812203|ref|XP_002600810.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
gi|229286100|gb|EEN56822.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
Length = 477
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G PS DN LFVG I K I +++ EGV N+ + + +RGFA
Sbjct: 125 GRLLGVCPSVDNCRLFVGGIPKNKKKHEILEEMSKV-TEGVVNVIVYPSATDKTKNRGFA 183
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP E D E+M VK +++ +
Sbjct: 184 FVEYESHRAAAMARRKLIPGRIQLWGH---QIAVDWAEPEPEVDEEVMRKVKVLYVRNLM 240
Query: 138 PHWKENQIRD--QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E+ I+ ++ V R+ K +DY F+ + T E A+A + A+N
Sbjct: 241 VTTTEDDIKQAFEVGEEETVTRV--------KKIRDYAFVHYKTREDAIAAMTAMNGSTL 292
Query: 196 SDGNSKV 202
+V
Sbjct: 293 EGAKLEV 299
Score = 38.1 bits (87), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 84/183 (45%), Gaps = 30/183 (16%)
Query: 12 FPLKQICGKRC---------GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 62
+PL Q G+R G AP + +FVG + ++ + + G + +
Sbjct: 30 YPLVQENGQRIYGRPPPGWEGPAPQRGCE-VFVGKLPRDLYEDELVPVFETIG--KIYEV 86
Query: 63 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP 122
L+ D G +RG+AFVM++ DA A K+L ++ G R + V P
Sbjct: 87 RLMMDFS--GSNRGYAFVMYTNKEDAKRAVKQLNNYEIRKG---RLLGVC---------P 132
Query: 123 EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKD--YGFIDFSTH 180
+ +F+ G+P + K+++I +++ + + V+ +T K K+ + F+++ +H
Sbjct: 133 SV--DNCRLFVGGIPKNKKKHEILEEMSKVTEGVVNVIVYPSATDKTKNRGFAFVEYESH 190
Query: 181 EAA 183
AA
Sbjct: 191 RAA 193
>gi|297743097|emb|CBI35964.3| unnamed protein product [Vitis vinifera]
Length = 353
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 9/151 (5%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LFVG I ++E +YG E +++ ++ +H G RGF F+ F+ D A
Sbjct: 53 LFVGGISWETSEEIFTNYFSNYG-EITDSVIMMD--RHTGRPRGFGFITFA---DPAVAD 106
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
K L++ V+ G R V+V P + ++ + +F+ G+P E++++D Y
Sbjct: 107 KVLEEDHVIDG---RAVEVKKTVPREGMEVRGVSKTRKIFVGGIPSSLTEDELKDYFSSY 163
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
G ++ + + T + + +GF+ F + +A
Sbjct: 164 GAIVENQIMLDHVTGRSRGFGFVTFVSEDAV 194
>gi|388854599|emb|CCF51756.1| uncharacterized protein [Ustilago hordei]
Length = 1235
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 91/211 (43%), Gaps = 21/211 (9%)
Query: 13 PLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEG 72
P+ G +C TLFV N W +I+ YG+ + N+ S +
Sbjct: 852 PVSIFIGWKC---------TLFVTNFPEEWDDSSIRSTFSPYGL--IFNVRWPS--KRFS 898
Query: 73 LSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTV 131
SR F +V F+ A AA + L +V G RT+ VA ++P R + + K +
Sbjct: 899 SSRRFCYVQFTTPSSASAAIEALNGKEVAEG---RTLNVALSDPSRRKQRSDANENAKEL 955
Query: 132 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191
F+ G+P + + +++ + YG V + L RN R GF+DF A + +N
Sbjct: 956 FVSGLPRNITDEELKTYFEAYGKVTGVRLLRNAEGGLR-GIGFVDFENALDATRAMKELN 1014
Query: 192 NKEFSDGNSKVKLR-ARLSNPMPKTQAVKGG 221
+ ++ V L +R SN K V GG
Sbjct: 1015 STKWRAKTISVTLADSRSSN--SKQSGVGGG 1043
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 100/198 (50%), Gaps = 19/198 (9%)
Query: 16 QICGKRCGTAPSEDNDTLF---VGNICNTWTKEAI--KQKLKDYGVEG-VENINLVSDIQ 69
+I GK C S+ + ++ VGNI E I KQ + + G + + +V+D +
Sbjct: 74 EIKGKPCRIMWSQRDPSMRRSGVGNIFVKNLHEGIDNKQLYDTFSLFGNILSCKVVTD-K 132
Query: 70 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 129
GLS+G+ +V + + A +A ++L ++ E V V +R + A
Sbjct: 133 ATGLSKGYGYVHYETNEAAASAIEKLD--GMLIDGKEVQVGVF----MRRDNRPGQADWT 186
Query: 130 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 189
VF+ +P W E+++R++ +G+G+V+ A+ +GF++F+THEAA A +
Sbjct: 187 NVFIKNIPFEWTEDKLREEFEGFGEVVS---AKPKEVQGSLGFGFVNFATHEAAAAAVKE 243
Query: 190 INNKEFS---DGNSKVKL 204
+N+KEF+ DG K+
Sbjct: 244 MNDKEFTVTEDGEEVTKV 261
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 25/183 (13%)
Query: 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGL-SRGFAFVMFSCHVD 87
D +F+ NI WT++ ++++ + +G +VS E S GF FV F+ H
Sbjct: 184 DWTNVFIKNIPFEWTEDKLREEFEGFG-------EVVSAKPKEVQGSLGFGFVNFATHEA 236
Query: 88 AMAAYKRLQ-KPDVVFGHPERTVKVAF---AEPLREPDPEIMAHVKTVFLD------GVP 137
A AA K + K V E KV F A+ E + E+ A + +D GV
Sbjct: 237 AAAAVKEMNDKEFTVTEDGEEVTKVLFVGRAQKKAERERELRAKYEAEKIDRIAKFQGVN 296
Query: 138 PHWK-------ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+ K ++ +RD+ G + + +++ T + +GF+ +ST E A +N +
Sbjct: 297 LYVKNLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDATRAVNEM 356
Query: 191 NNK 193
N K
Sbjct: 357 NGK 359
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 21/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFG-----NILSCKVAQDESGASKGYGFVHYETDEAAAQA 205
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L + V GH P++ + F E + A+ +++ +P E +
Sbjct: 206 IKHVNGMLLNEKKVFVGHHIPKKDRQSKFEE--------MKANFTNIYVKNIPVEATEEE 257
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R+ + +GDV LAR+ + K + +GF++F HE A ++ +N K+F
Sbjct: 258 FRELFEKFGDVTSASLARDTESGKSRGFGFVNFINHEHAATAVDELNGKDF 308
>gi|403220835|dbj|BAM38968.1| ribonucleoprotein [Theileria orientalis strain Shintoku]
Length = 604
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 121/298 (40%), Gaps = 38/298 (12%)
Query: 14 LKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGL 73
+K + G C AP + LF+ I +E I++ +++G VE++ ++ D + +
Sbjct: 71 IKPLEGLPCSPAPPA-SIKLFIARIPRDHKEEDIRKLFEEFGT--VEDVTIIKD-KATNV 126
Query: 74 SRGFAFVMFSCHVDAMAAYKRLQKPDVV------------FGHPERTVKVAFAEPLREPD 121
+ AFV + A AA + L V G PER + F + + EP
Sbjct: 127 PKNCAFVKMASICQADAAIRSLNNQHTVEPGLGAVQIRYATGEPER---LGFTQMVGEPG 183
Query: 122 PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 181
+F+ +P + E ++D K YGD + L ++M++ K GF+ E
Sbjct: 184 ----VDTAKLFVGSLPRSFSEQDLQDLFKDYGDAVETFLMKDMNSGGNKGCGFVRMRYKE 239
Query: 182 AAVACINAINNKEF-SDGNSKVKLR-ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRY 239
A+ I +++K+ D +++R A+ N P+ + M R F Y
Sbjct: 240 QALYAIRELDHKKMVKDSVKPIEVRFAQSKNAAPQDPRL---MQRIKRPPPPLDGIFPNY 296
Query: 240 GRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEYDFDNRYTEFHGRQFIGRGGR 297
G G NF G G + + + + +G Y+ N R++I GR
Sbjct: 297 GPG----------GNFNGGYGKLKKRKKNGASLGYMSYNNGNPRHAGAWREYISPDGR 344
>gi|297816558|ref|XP_002876162.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297322000|gb|EFH52421.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 470
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 84/177 (47%), Gaps = 7/177 (3%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GKR + ++ LF+GN+ WT+ IK+ G GV+ + L + Q+ G +RGFA
Sbjct: 159 GKRIKCSTTQAKHRLFLGNVPRNWTESDIKKAANRIG-PGVQIVELPKEPQNMGRNRGFA 217
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE-PLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A Y + + + F + V++AE + VK +++ +P
Sbjct: 218 FIEYHNH--ACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKALYIKNLP 275
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+ +++ + +G ++++V+ + YGF+ ++ + + A+ N E
Sbjct: 276 RDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAER---TSVMRALKNTE 329
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 185
+H V+L G+P E ++ + G+V + + R + K Y F+ F + A
Sbjct: 88 SHGSEVYLGGIPTDATEGDLKGFCQSIGEVTEVRIMREKESGDGKGYAFVTFRNKDLASK 147
Query: 186 CINAINNKEF 195
I+ +N+ EF
Sbjct: 148 AIDTLNSTEF 157
>gi|357619642|gb|EHJ72132.1| heterogeneous nuclear ribonucleoprotein A1 [Danaus plexippus]
Length = 307
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 76/150 (50%), Gaps = 9/150 (6%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS-CHVDAMAA 91
LF+G + T ++K+ + +G + ++ ++ D Q + SRGF F+ +S H+ A
Sbjct: 26 LFIGGLDYCTTDTSLKEFYEQWG--DIVDVVVMKDPQTK-RSRGFGFITYSRAHMVDDAQ 82
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
R K D P+R V E ++ PD A VK +F+ G+ +E +R+
Sbjct: 83 KNRPHKIDGRIVEPKRAVP---REEIKRPDAS--ATVKKLFIGGIKQDIEEEDLREYFSK 137
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHE 181
+G++I + L T K++ +GFI+F ++
Sbjct: 138 FGEIISVSLVTEKDTGKKRGFGFIEFDDYD 167
>gi|222616602|gb|EEE52734.1| hypothetical protein OsJ_35153 [Oryza sativa Japonica Group]
Length = 558
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 98/196 (50%), Gaps = 10/196 (5%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
++ GKR + S+ + LF+GN+ ++WT + ++ +++ G GV +L+ + +R
Sbjct: 174 KLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG-PGVLKADLMK-VSSANRNR 231
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
G+ FV + H A A Y R + F V++A+P + D + VK+V++
Sbjct: 232 GYGFVEYYNH--ACAEYARQEMSSPTFKLDSNAPTVSWADP-KNNDSASTSQVKSVYVKN 288
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P + + Q++ + +G++ ++VL + + YGF+ F A + A+ N E
Sbjct: 289 LPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR-YGFVHFKDRSMA---MRALQNTER 344
Query: 196 SDGNSKVKLRARLSNP 211
+ + +V L L+ P
Sbjct: 345 YELDGQV-LDCSLAKP 359
>gi|332026193|gb|EGI66335.1| APOBEC1 complementation factor [Acromyrmex echinatior]
Length = 466
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 7/173 (4%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G R G S DN LF G + T TK ++L ++G+ +I + Q L+RGF
Sbjct: 123 GHRIGVVKSMDNCRLFFGGVPKTKTKPEFMEELTKI-LDGITDIYVYPSAQDRNLNRGFI 181
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
FV F H A A ++L V+ E V A EP D +IM V +F+ +
Sbjct: 182 FVEFKDHRAAAMARRKLIPGKVMLWDHEIAVDWADPEPGDPIDEDIMETVTALFVRNLAL 241
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191
+ ++R+ + Y +V + L K + F+ + EAA +N +
Sbjct: 242 DMSQQKVREILYRYTNVPILKL------KKINHFAFVHYENREAAKTVMNIME 288
>gi|125535710|gb|EAY82198.1| hypothetical protein OsI_37401 [Oryza sativa Indica Group]
Length = 783
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 98/196 (50%), Gaps = 10/196 (5%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
++ GKR + S+ + LF+GN+ ++WT + ++ +++ G GV +L+ + +R
Sbjct: 174 KLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG-PGVLKADLMK-VSSANRNR 231
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
G+ FV + H A A Y R + F V++A+P + D + VK+V++
Sbjct: 232 GYGFVEYYNH--ACAEYARQEMSSPTFKLDSNAPTVSWADP-KNNDSASTSQVKSVYVKN 288
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P + + Q++ + +G++ ++VL + + YGF+ F A + A+ N E
Sbjct: 289 LPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR-YGFVHFKDRSMA---MRALQNTER 344
Query: 196 SDGNSKVKLRARLSNP 211
+ + +V L L+ P
Sbjct: 345 YELDGQV-LDCSLAKP 359
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 22/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 145 VFIKNLDVAIDNKALHDTFAAFG-----NILSCKVAQDETGSSKGYGFVHYETDEAAQQA 199
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L + V GH P++ + F E + A+ V++ + P ++Q
Sbjct: 200 IKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE--------MKANFTNVYIKNIAPDVTDDQ 251
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R + +GDV +AR+ K + +GF++F+THEAA A + +NNK+F
Sbjct: 252 FRVLFEAHGDVTSSSIARD-PDGKSRGFGFVNFTTHEAASAAVEELNNKDF 301
>gi|396471523|ref|XP_003838892.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
gi|312215461|emb|CBX95413.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
Length = 490
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 89/182 (48%), Gaps = 19/182 (10%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LFVGN+ ++ ++++ + +G + +++D + G +GF +V F+ DA A
Sbjct: 236 LFVGNLSWNIDEDWLRREFEGFGE--IVGCRIITD-RETGRGKGFGYVEFATSADAAKAQ 292
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDP------------EIMAHVKTVFLDGVPPHW 140
+ + ++ G P + V F+ P ++PD + A T+FL +
Sbjct: 293 AEMHQYELD-GRP---LNVDFSTPRQKPDAGKTNDRANKYGDKRSAPSNTLFLGNLSFDC 348
Query: 141 KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 200
+ I++ YG++ R+ L + T K +G++DF + E A A ++A+N ++ + N
Sbjct: 349 TNDSIQEIFAEYGNITRVSLPTDRDTGSIKGFGYVDFGSQEEATAALDALNGQDIAGRNI 408
Query: 201 KV 202
++
Sbjct: 409 RI 410
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 24 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 83
+APS +TLF+GN+ T ++I++ +YG + ++L +D + G +GF +V F
Sbjct: 333 SAPS---NTLFLGNLSFDCTNDSIQEIFAEYG--NITRVSLPTD-RDTGSIKGFGYVDFG 386
Query: 84 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 116
+A AA L D+ R +++ +A P
Sbjct: 387 SQEEATAALDALNGQDIAG----RNIRIDYAAP 415
>gi|449447863|ref|XP_004141686.1| PREDICTED: uncharacterized protein LOC101220676 [Cucumis sativus]
gi|449525968|ref|XP_004169988.1| PREDICTED: uncharacterized LOC101220676 [Cucumis sativus]
Length = 700
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 9/157 (5%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
S + LFVG + T++ + YG E +++ ++ +H G RGF FV F
Sbjct: 419 SSSSGKLFVGGVAWETTEDTFRDYFSKYG-EIADSVIMID--KHTGRPRGFGFVTF---C 472
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
D A L+ ++ G R V+V P + + ++++ K +F+ G+PP E + +
Sbjct: 473 DPAIADMVLKIDHIIDG---RAVEVKRTVPRADMNDKMVSRTKKIFVGGIPPGLTEEEFK 529
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
D +G +I + + T + + +GFI F ++
Sbjct: 530 DYFSSFGRIIEHQIMIDYKTKRSRGFGFITFENEDSV 566
>gi|410914854|ref|XP_003970902.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Takifugu rubripes]
Length = 307
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 94/217 (43%), Gaps = 26/217 (11%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK T ED +FVG + +K+ +K +G I SD G SRGF
Sbjct: 44 GKIEATKGDEDTGKMFVGGLSWDTSKKDLKDYFTKFGEVSDCTIKFDSD---SGRSRGFG 100
Query: 79 FVMFSCHVDAMAAYKRLQKP----DVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 134
FV+F D + K L++ D P+R + + +EP VK +F+
Sbjct: 101 FVLFK---DPSSVEKVLEQKEHRLDGRLIDPKRAMAMK-----KEP-------VKKIFVG 145
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
G+ P E IR+ YG++ I L + + KR+ + FI + +A C + NK
Sbjct: 146 GLIPEATEENIREYFGEYGEIENIELPLDPKSNKRRGFIFITYKEEASAKKC---LENKF 202
Query: 195 FSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHG 231
+ S+ +L+ + + Q + G SGG R G G
Sbjct: 203 HTIEGSRCELKLAQPKEVYQQQQYR-GRSGGSRAGWG 238
>gi|357619641|gb|EHJ72131.1| heterogeneous nuclear ribonucleoprotein A1 [Danaus plexippus]
Length = 315
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 85/168 (50%), Gaps = 13/168 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS-CHVDAMAA 91
+F+G + + E++K + +G + ++ ++ D + + SRGF F+ +S H M
Sbjct: 19 IFIGGLNYRTSDESLKAHFEKWG--EIVDVVVMKDPKTK-RSRGFGFITYSKAH---MVD 72
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
+L +P + G T + + ++ +PE A VK +F+ G+ E Q+R+
Sbjct: 73 DAQLNRPHRIDGRMVETKRAVARQDIK--NPEAGATVKKLFIGGIKDDHDEEQLREYFSN 130
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA-VACINA---INNKEF 195
YG+V + + + T K++ +GF++F ++ C+NA IN K+
Sbjct: 131 YGNVQNVSIVTDKGTGKKRGFGFVEFDDYDPVDKICLNAPHKINGKQL 178
>gi|431916163|gb|ELK16415.1| Heterogeneous nuclear ribonucleoprotein D0 [Pteropus alecto]
Length = 334
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 75 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---- 126
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 127 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 180
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 181 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 236
Query: 206 ARLS 209
+S
Sbjct: 237 VAMS 240
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 22/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 150 VFIKNLDVAIDNKALHDTFAAFG-----NILSCKVAQDENGNSKGYGFVHYETDEAAAQA 204
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L + V GH P++ + F E + A+ V++ + P E+
Sbjct: 205 IKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE--------MKANFTNVYVKNISPEATEDD 256
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R + YGDV LAR+ K + +GF++F+THE+A ++ +N K+F
Sbjct: 257 FRQLFEQYGDVTSSSLARDQE-GKSRGFGFVNFTTHESAAKAVDELNGKDF 306
>gi|66911597|gb|AAH97855.1| LOC496375 protein [Xenopus laevis]
Length = 286
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 18/203 (8%)
Query: 24 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMF 82
+ ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 22 SKTEEDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 77
Query: 83 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKE 142
K + D V E + +P R + VK +F+ G+ P E
Sbjct: 78 ----------KESEGVDKVMEQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPE 127
Query: 143 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202
++IR+ +G+V I L + T KR+ + FI F + N + K + G SK
Sbjct: 128 DKIREYFGTFGEVEAIELPMDNKTNKRRGFCFITFKEEDPVK---NIMEKKYHNVGLSKC 184
Query: 203 KLRARLSNPMPKTQAVKGGMSGG 225
+++ LS + Q G GG
Sbjct: 185 EIKVALSKEQYQQQQQWGTRGGG 207
>gi|395542043|ref|XP_003772944.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Sarcophilus
harrisii]
Length = 306
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 50 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 96
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 97 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 155
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 156 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 210
>gi|170060137|ref|XP_001865670.1| heterogeneous nuclear ribonucleoprotein 27C [Culex
quinquefasciatus]
gi|167878677|gb|EDS42060.1| heterogeneous nuclear ribonucleoprotein 27C [Culex
quinquefasciatus]
Length = 402
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 11/158 (6%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
LFVG + T+E +++ YG E I+ V +E G SRGF FV F+ + A
Sbjct: 21 LFVGGLSWETTQENLQRYFGRYG----EVIDCVVMKNNETGRSRGFGFVTFADPENVERA 76
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
+ P + G RT+ P P+ VFL G+PP+ E +R
Sbjct: 77 LEN--GPHTLDG---RTIDPKPCNPRSLHKPKRTGGYPKVFLGGLPPNITETDLRSFFSR 131
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 189
YG+V+ +V+ + K + +GF+ F +EAAV A
Sbjct: 132 YGNVMEVVIMYDQEKKKSRGFGFLSFE-NEAAVERATA 168
>gi|225433229|ref|XP_002285419.1| PREDICTED: uncharacterized protein LOC100257917 [Vitis vinifera]
Length = 464
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 91/198 (45%), Gaps = 31/198 (15%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDY-GVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
D LF+G I +W E + KLK+Y G G + +V + G RGF FV+F+
Sbjct: 3 SDQGKLFIGGI--SW--ETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFA--- 55
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA-------------HVKT--V 131
D + LQ+ ++ G RTV+ A E A +VKT +
Sbjct: 56 DPSILDRVLQEKHIIDG---RTVEAKRALSREEQQTSSRAGNFNSARNSGGGGNVKTKKI 112
Query: 132 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191
F+ G+PP E R + +G V +V+ + ST + + +GF+ F T +A ++ +
Sbjct: 113 FVGGLPPTLSEEGFRQYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTEDA----VDRVL 168
Query: 192 NKEFSDGNSK-VKLRARL 208
K F D N K V+++ L
Sbjct: 169 YKTFHDLNGKQVEVKRAL 186
>gi|118489133|gb|ABK96373.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 255
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 20/177 (11%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
SE L+VGNI T T E + + ++++G VE ++ D ++ G SR FAFV
Sbjct: 75 SEAARRLYVGNIPRTLTNEELTKIVEEHG--AVEKAEVMYD-KYSGRSRRFAFVTMKTAE 131
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAE-PLREPDPEIMAHVKTVFLDGVPPH------ 139
DA AA ++L ++ R +KV E PL+ D + +T F+D P+
Sbjct: 132 DANAAIEKLNGTEI----GGREIKVNITEKPLQSLDLPSLQSDETQFVDS--PYKVYVGN 185
Query: 140 WKENQIRDQIKGY----GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 192
+ D +K + G+V+ ++R T+K +GF+ FS+ E I++ NN
Sbjct: 186 LAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEVAISSFNN 242
>gi|357157795|ref|XP_003577917.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 15/171 (8%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
L+VGNI T T + ++ D+G V +++ D ++ G SR F FV S +A AA
Sbjct: 71 LYVGNIPRTVTNDELRAMFADHGT--VLRADVMYD-KYSGRSRRFGFVTMSSVEEANAAI 127
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLR--------EPDPEIMAHVKTVFLDGVPPHWKENQ 144
+ L + +V R +KV E EP+P + V++ +
Sbjct: 128 ESLNETEV----GGRKIKVNVTESFLPNIDPSAPEPEPAFVDSQYKVYVGNLAKTVTTEV 183
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+++ G+V+ ++R T K K YGF+ FS+ E A ++ NN E
Sbjct: 184 LKNFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAAVSTFNNTEL 234
>gi|348535413|ref|XP_003455195.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like
[Oreochromis niloticus]
Length = 316
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 96/228 (42%), Gaps = 31/228 (13%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +FVG + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 53 EDEGKMFVGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPMTGRSRGFGFVLF---- 104
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
K + D V E + +P + + VK +F+ G+ P E ++R
Sbjct: 105 ------KEPESVDKVASQKEHKLNGKVIDPKKAKAMKSKEPVKKIFVGGLSPDTPEEKVR 158
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ +G+V + L T KR+ + FI F E + I K++ + G SK +++
Sbjct: 159 EYFGAFGEVESVELPMENKTNKRRGFCFITFKEEEP----VKKIMEKKYHNIGLSKCEIK 214
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA 253
+S + Q GG G +S RG G ++N+
Sbjct: 215 VAMSKEQYQQQQYWGGRGG-----------YSSRSRGRGGPNQNWNQG 251
>gi|308475439|ref|XP_003099938.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
gi|308266205|gb|EFP10158.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
Length = 408
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
SED TLFVGN+ T E + G V ++ D +GL+ FAFV FS H
Sbjct: 34 SEDPRTLFVGNLDPAITDEFLATLFNQIG--AVTKAKIIFDC-FQGLNDPFAFVEFSDHN 90
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP----DPEIMAHVKTVFLDGVPPHWKE 142
A A + + ++ ER ++V +A +P PE H VF+ +
Sbjct: 91 QASQALQSMNGRQLL----EREMRVNWAVEPNQPGDRNKPETSRHFH-VFVGDLSAEIDS 145
Query: 143 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191
++R+ +G+V + R+ +T K K YGF+ + E A I +N
Sbjct: 146 TKLREAFLPFGEVSEAKIIRDNATNKAKGYGFVSYPRREDAERAIEQMN 194
>gi|308809696|ref|XP_003082157.1| RNA-binding protein ELAV/HU (RRM superfamily) (ISS) [Ostreococcus
tauri]
gi|116060625|emb|CAL57103.1| RNA-binding protein ELAV/HU (RRM superfamily) (ISS) [Ostreococcus
tauri]
Length = 679
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 9/182 (4%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
+ED+ +++G + T T E +K GV V+ + + D +GFAF+ F+
Sbjct: 380 AEDDRKVYIGRLPTTATAEGLKDMFSSAGV--VQEVACIPDTVLGHSCKGFAFITFATVD 437
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV---KTVFLDGVPPHWKEN 143
DAM A + V+F +R ++V RE + +++ GV E+
Sbjct: 438 DAMKAASTMNG--VMF--EDRPMEVRMKNAPREQTQKEANEFDPNANLYVGGVTESMNED 493
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203
+R+ YG V + + R+ +T K YGF+ A A I A++ + F+D
Sbjct: 494 ALREIFSPYGLVQKTKIVRDHATQAAKGYGFVQMMDPSHAQAAITALDGQYFADSTRPFM 553
Query: 204 LR 205
+R
Sbjct: 554 VR 555
>gi|147791134|emb|CAN68016.1| hypothetical protein VITISV_025150 [Vitis vinifera]
Length = 464
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 91/198 (45%), Gaps = 31/198 (15%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDY-GVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
D LF+G I +W E + KLK+Y G G + +V + G RGF FV+F+
Sbjct: 3 SDQGKLFIGGI--SW--ETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFA--- 55
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA-------------HVKT--V 131
D + LQ+ ++ G RTV+ A E A +VKT +
Sbjct: 56 DPSILDRVLQEKHIIDG---RTVEAKRALSREEQQTSSRAGNFNSARNSGGGGNVKTKKI 112
Query: 132 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191
F+ G+PP E R + +G V +V+ + ST + + +GF+ F T +A ++ +
Sbjct: 113 FVGGLPPTLSEEGFRQYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTEDA----VDRVL 168
Query: 192 NKEFSDGNSK-VKLRARL 208
K F D N K V+++ L
Sbjct: 169 YKTFHDLNGKQVEVKRAL 186
>gi|410292486|gb|JAA24843.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 355
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 259
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 24/173 (13%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+F+ N+ + +A+ +G E ++ + +G SRGFAFV + A AA
Sbjct: 130 IFIKNLDESIDNKALHDTFAAFG----EILSCKVGVDEDGKSRGFAFVHYQTGEAADAAI 185
Query: 93 K-----RLQKPDVVFGH----PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
K L V GH ER K E AH VF+ V E
Sbjct: 186 KGVDGMMLNDKKVFVGHHIGKKERQSKAE----------EQRAHFTNVFVKNVDLSVTEK 235
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
+ D + +G+ + I L+ + K K +GF+++ +HEAA ++ +N+KE +
Sbjct: 236 EFEDLVSKFGETVSIALSLD-EEGKSKGFGFVNYVSHEAAEKAVDELNDKEVN 287
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 79/184 (42%), Gaps = 14/184 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FV N+ + T++ + + +G E +++ + EG S+GF FV + H A A
Sbjct: 223 VFVKNVDLSVTEKEFEDLVSKFG----ETVSIALSLDEEGKSKGFGFVNYVSHEAAEKAV 278
Query: 93 KRLQKPDV-----VFGHPERTVK--VAFAEPLREPDPEIMAHVKTV--FLDGVPPHWKEN 143
L +V G ++ V+ + + E E A V ++ + W ++
Sbjct: 279 DELNDKEVNGQKLWAGRAQKRVERDTELRKTIEEKRQEFDAKSAGVNLYVKNLDDEWDDD 338
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203
++R + +G + + ++ R ++GF+ +S+ E A ++ +N K V
Sbjct: 339 RLRAEFDSFGTITSCKVMKDERGVSR-NFGFVCYSSPEEATKAVSEMNGKMIGSKPLYVA 397
Query: 204 LRAR 207
L R
Sbjct: 398 LAQR 401
>gi|224126191|ref|XP_002329613.1| predicted protein [Populus trichocarpa]
gi|222870352|gb|EEF07483.1| predicted protein [Populus trichocarpa]
Length = 166
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 10/151 (6%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LFVG + T+E YG E ++++ + +H G RGF FV F+ D + A
Sbjct: 2 LFVGGVSWETTEETFTNYFSKYG-EVMDSVIMTD--RHSGRPRGFGFVTFA---DPVVAD 55
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+ L++ V+ G R V+V P RE + K +F+ G+PP E+++++ Y
Sbjct: 56 RVLEEDHVIDG---RAVEVKRTVP-REDMEVRVTRTKKIFVGGIPPSLTEDELKEYFSVY 111
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
G ++ + + T + + +GF+ F + +A
Sbjct: 112 GSIVDHQIMLDHKTGRSRGFGFVTFDSEDAV 142
>gi|125563035|gb|EAZ08415.1| hypothetical protein OsI_30679 [Oryza sativa Indica Group]
Length = 226
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 78/169 (46%), Gaps = 30/169 (17%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
L+VGNI T T + + D+G VE ++ D ++ G SR F FV S +A AA
Sbjct: 72 LYVGNIPRTVTNDELAAMFADHGT--VERAEVMFD-KYTGRSRRFGFVTMSTPEEANAAI 128
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPL------REPDPEIMAHVKTVFLDGVPPHWKENQIR 146
+ L + +V R +KV E P+PE VF+D +Q R
Sbjct: 129 ESLNETEV----GGRKIKVNVTESFLPNIDRSAPEPE------PVFVD--------SQYR 170
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ G+V+ ++R TAK K YGF+ FS+ E A ++ NN E
Sbjct: 171 FTL---GEVLSATVSRIPGTAKSKGYGFVTFSSEEEVEAAVSTFNNAEL 216
>gi|440898655|gb|ELR50103.1| Heterogeneous nuclear ribonucleoprotein D0, partial [Bos grunniens
mutus]
Length = 277
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 21 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 67
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 68 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 126
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 127 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 181
>gi|432884676|ref|XP_004074535.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like [Oryzias
latipes]
Length = 314
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 20/184 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +FVG + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 53 EDEGKMFVGGL--SW--DTTKKDLKDYFAKFGEVVDCTLKLDPMTGRSRGFGFVLFK--- 105
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
DA + K + + K A A +EP VK VF+ G+ P E ++R
Sbjct: 106 DAESVEKVASQKEHKLNGKVIDPKKAKAMKSKEP-------VKKVFVGGLSPDTPEEKVR 158
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 205
+ +G+V I L T KR+ + FI F EA + + K++ + G SK +++
Sbjct: 159 EYFGAFGEVESIELPMENKTNKRRGFCFITFKEEEA----VKKVMEKKYHNIGLSKCEVK 214
Query: 206 ARLS 209
LS
Sbjct: 215 VALS 218
>gi|355765936|gb|EHH62474.1| Heterogeneous nuclear ribonucleoprotein D0, partial [Macaca
fascicularis]
Length = 302
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 46 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 92
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 93 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 151
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 152 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 206
>gi|351695030|gb|EHA97948.1| Heterogeneous nuclear ribonucleoprotein D0, partial [Heterocephalus
glaber]
Length = 277
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 21 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 67
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 68 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 126
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 127 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 181
>gi|344249843|gb|EGW05947.1| Heterogeneous nuclear ribonucleoprotein D0 [Cricetulus griseus]
Length = 257
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 1 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 47
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 48 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 106
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 107 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 161
>gi|354497793|ref|XP_003511003.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like
[Cricetulus griseus]
Length = 286
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 30 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 76
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 77 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 135
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 136 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 190
>gi|222615491|gb|EEE51623.1| hypothetical protein OsJ_32902 [Oryza sativa Japonica Group]
Length = 1042
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 98/196 (50%), Gaps = 10/196 (5%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
++ GKR + S+ + LF+GN+ ++WT + ++ +++ G GV +L+ + +R
Sbjct: 552 KLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVG-PGVLKADLM-KVSSANRNR 609
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
G+ FV + H A A Y R + F V++A+P + D + VK+V++
Sbjct: 610 GYGFVEYYNH--ACAEYARQEMSSPTFKLDSNAPTVSWADP-KNNDSVSTSQVKSVYVKN 666
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P + + Q++ + +G++ ++VL + + YGF+ F A + A+ N E
Sbjct: 667 LPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR-YGFVHFKDRSMA---MRALQNTER 722
Query: 196 SDGNSKVKLRARLSNP 211
+ + +V L L+ P
Sbjct: 723 YELDGQV-LDCSLAKP 737
>gi|147905111|ref|NP_001081320.1| heterogeneous nuclear ribonucleoprotein A3 homolog 2 [Xenopus
laevis]
gi|1710626|sp|P51992.1|RO32_XENLA RecName: Full=Heterogeneous nuclear ribonucleoprotein A3 homolog 2;
AltName: Full=hnRNP A3(B)
gi|214747|gb|AAA49950.1| ribonucleoprotein [Xenopus laevis]
Length = 385
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 22/199 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDA-M 89
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA M
Sbjct: 29 LFIGGLSFETTDDSLREHFEQWG--KLTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDASM 85
Query: 90 AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRD 147
+A R K D P+R V RE AH VK +F+ G+ +E +RD
Sbjct: 86 SA--RPHKVDGRVVEPKRAVS-------REDSARPGAHLTVKKIFVGGIKEDTEEYHLRD 136
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN-SKVKLRA 206
+GYG + I + + + K++ + F+ F H+ ++ I +++ N +++
Sbjct: 137 YFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDT----VDKIVVQKYHTINLHNCEVKK 192
Query: 207 RLSNPMPKTQAVKGGMSGG 225
LS +T + + G GG
Sbjct: 193 ALSKQEMQTASAQRGRGGG 211
>gi|426344801|ref|XP_004038942.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0, partial
[Gorilla gorilla gorilla]
Length = 291
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 35 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 81
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 82 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 140
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 141 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 195
>gi|383857431|ref|XP_003704208.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like
[Megachile rotundata]
Length = 443
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 18/165 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHV 86
++ LFVG + T+E +++ YG E I+ V E G SRGF FV FS
Sbjct: 10 DEKGKLFVGGLSWETTQENLQRYFGRYG----EVIDCVVMKNSESGRSRGFGFVTFSDPA 65
Query: 87 DAMAAYKRLQKPDVVFGHPE----RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKE 142
+ P V+ P RT+ P + P+ VFL G+P + E
Sbjct: 66 NV---------PLVLQNGPHQLDGRTIDPKPCNPRTQQKPKRSGGFPKVFLGGLPSNVTE 116
Query: 143 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
+R YG V+ +V+ + K + +GF+ F +A C+
Sbjct: 117 TDLRTFFNRYGKVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCV 161
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 19/170 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFG-----NILSCKVAQDEFGNSKGYGFVHYETAEAAQNA 199
Query: 92 YKR-----LQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQI 145
K L V GH A+ R+ E+ A+ V++ + E +
Sbjct: 200 IKHVNGMLLNDKKVFVGH-------HIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEF 252
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
RD + +G++ LAR+ + K + +GF++F++H+ A A + A+N+K+F
Sbjct: 253 RDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDF 302
>gi|74209393|dbj|BAE23274.1| unnamed protein product [Mus musculus]
Length = 301
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 21/208 (10%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 67
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 68 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS-KVKLRARL 208
+ YG + I + + + K++ +GF+ F H+ ++ I +E+ N ++R L
Sbjct: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDP----VDKIVLQEYHTINGHNAEVRKAL 176
Query: 209 S-NPMPKTQAVKGGMSGGFRIGHGSSRT 235
S M + Q+ + G G F G G SR
Sbjct: 177 SRQEMQEVQSSRSGRGGNF--GFGDSRV 202
>gi|160333913|ref|NP_001103930.1| heterogeneous nuclear ribonucleoprotein D0 [Danio rerio]
gi|141796298|gb|AAI39675.1| Hnrnpd protein [Danio rerio]
Length = 314
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 20/185 (10%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCH 85
ED +FVG + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 50 EEDEGKMFVGGL--SW--DTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLF--- 102
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
K + + V E + +P + + VK +F+ G+ P E +I
Sbjct: 103 -------KEAESVEKVITQKEHKLNGKVIDPKKAKAMKTKEPVKKIFVGGLSPDTPEEKI 155
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKL 204
R+ YG+V I L T KR+ + FI F E + I K + + G SK ++
Sbjct: 156 REYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEP----VKKIMEKMYHNIGLSKCEV 211
Query: 205 RARLS 209
+ +S
Sbjct: 212 KVAMS 216
>gi|334330945|ref|XP_001364005.2| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like
[Monodelphis domestica]
Length = 376
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 120 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 166
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 167 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 225
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 226 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 280
>gi|198425734|ref|XP_002119812.1| PREDICTED: similar to HUC, partial [Ciona intestinalis]
Length = 408
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 16/170 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
L V + T + + Q + G V + ++ D Q G S G+ FV + DA A
Sbjct: 85 LIVNYLPQTLSDQEFYQLFNNVGA--VTSARIIRDKQ-SGYSFGYGFVDYVKPEDADKAI 141
Query: 93 KRLQKPDVVFGHP--ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
++L GHP +T+KVAF++P I +++ G+ P E ++ +
Sbjct: 142 QQLN------GHPIQHKTIKVAFSKPAGADSKNI-----NLYVAGLNPDTSEESLKQRFS 190
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 200
YG +I+ + ++ +T GF+ F+T + A+A I A+N FS ++
Sbjct: 191 SYGTIIQTRVLKDKNTNLCSGIGFVLFNTKDEAMAAIKALNGAVFSQAST 240
>gi|429859146|gb|ELA33937.1| polyadenylate-binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 688
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 22/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 124 VFIKNLDVAIDNKALHDTFAAFG-----NILSCKVAQDENGNSKGYGFVHYETDEAAAQA 178
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L + V GH P++ + F E + A+ V++ + +++
Sbjct: 179 IKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE--------MKANFTNVYVKNIANEVTDDE 230
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
RD +GDV LAR+ K + +GF++F+THEAA + +NNK+F
Sbjct: 231 FRDLFAAFGDVTSSSLARDQE-GKSRGFGFVNFTTHEAAAKAVEDLNNKDF 280
>gi|47228465|emb|CAG05285.1| unnamed protein product [Tetraodon nigroviridis]
Length = 249
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 18/198 (9%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +FVG + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 54 EDEGKMFVGGL--SW--DTTKKDLKDYFCKYGEVVDCTLKLDPITGRSRGFGFVLFK--- 106
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
DA + K + + K A A +EP VK +F+ G+ P E ++R
Sbjct: 107 DAESVEKVASQKEHKLNGKVIDPKKAKAMKGKEP-------VKKIFVGGLSPDTPEEKVR 159
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206
+ +G+V I L T KR+ + FI F E V CI + K + G SK +++
Sbjct: 160 EYFGAFGEVESIELPMETKTNKRRGFCFITFK-EEEPVKCI--MEKKFHNIGLSKCEIKV 216
Query: 207 RLSNPMPKTQAVKGGMSG 224
+S + Q GG G
Sbjct: 217 AVSKEQYQQQQYWGGRGG 234
>gi|224110618|ref|XP_002315580.1| predicted protein [Populus trichocarpa]
gi|222864620|gb|EEF01751.1| predicted protein [Populus trichocarpa]
Length = 459
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 21/197 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDY-GVEGVENINLVSDIQHEGLSRGFAFVMFS--C 84
D LF+G I +W E ++KL+DY G G +V + G RGF FV+F+
Sbjct: 3 SDQGKLFIGGI--SW--ETSEEKLRDYFGQYGDVLQAVVMKDKTTGRPRGFGFVVFADPA 58
Query: 85 HVDAMAAYK-----RLQKPDVVFGHPER--TVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
+D + K R+ + E+ + P R K +F+ G+P
Sbjct: 59 VLDMVLQDKHTIDGRMVEAKRALSREEQQTNARAGNLNPARNTSGGGNIRTKKIFVGGLP 118
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
P E+ R + +G V +V+ + ST + + +GFI F T +A ++ + + F D
Sbjct: 119 PTLTEDGFRQYFEAFGFVADVVIMYDQSTQRPRGFGFISFDTEDA----VDRVLQRSFHD 174
Query: 198 GNSKVKLRARLSNPMPK 214
N K + + +PK
Sbjct: 175 LNGK---QVEVKRALPK 188
>gi|125533325|gb|EAY79873.1| hypothetical protein OsI_35035 [Oryza sativa Indica Group]
Length = 1181
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 98/196 (50%), Gaps = 10/196 (5%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
++ GKR + S+ + LF+GN+ ++WT + ++ +++ G GV +L+ + +R
Sbjct: 583 KLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVG-PGVLKADLM-KVSSANRNR 640
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 135
G+ FV + H A A Y R + F V++A+P + D + VK+V++
Sbjct: 641 GYGFVEYYNH--ACAEYARQEMSSPTFKLDSNAPTVSWADP-KNNDSASTSQVKSVYVKN 697
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P + + Q++ + +G++ ++VL + + YGF+ F A + A+ N E
Sbjct: 698 LPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR-YGFVHFKDRSMA---MRALQNTER 753
Query: 196 SDGNSKVKLRARLSNP 211
+ + +V L L+ P
Sbjct: 754 YELDGQV-LDCSLAKP 768
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 19/170 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFG-----NILSCKVAQDEFGNSKGYGFVHYETAEAAQNA 199
Query: 92 YKR-----LQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQI 145
K L V GH A+ R+ E+ A+ V++ + E +
Sbjct: 200 IKHVNGMLLNDKKVFVGH-------HIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEF 252
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
RD + +G++ LAR+ + K + +GF++F++H+ A A + A+N+K+F
Sbjct: 253 RDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDF 302
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 19/170 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFG-----NILSCKVAQDEFGNSKGYGFVHYETAEAAQNA 199
Query: 92 YKR-----LQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQI 145
K L V GH A+ R+ E+ A+ V++ + E +
Sbjct: 200 IKHVNGMLLNDKKVFVGH-------HIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEF 252
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
RD + +G++ LAR+ + K + +GF++F++H+ A A + A+N+K+F
Sbjct: 253 RDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDF 302
>gi|443720300|gb|ELU10098.1| hypothetical protein CAPTEDRAFT_167544 [Capitella teleta]
Length = 541
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 21/212 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I + I+ ++K EGV ++ + + +RGFA
Sbjct: 126 GRFLGVCLSVDNCRLFVGGIPKNKQRHEIRTEMKKV-TEGVVDVIVYPSATDKAKNRGFA 184
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV- 136
FV + H A A ++L + ++GH + V +AEP +E D ++M+ VK +++ +
Sbjct: 185 FVEYESHRAAAMARRKLIPGRIQLWGH---QIAVDWAEPEQEVDEDVMSKVKILYVRNLM 241
Query: 137 --PPHWKENQIRDQIKGY-GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
+Q G G V R+ K +DY F+ F + A+ + IN +
Sbjct: 242 LTTTEEFLETTFNQACGKEGAVERV--------KKLRDYAFVHFKERDDALLAMEVINGQ 293
Query: 194 EFSDGNSKVKLRARLSNPMPKTQAVKGGMSGG 225
+V L+ P+ K V+ GG
Sbjct: 294 LIEGSMVEVT----LAKPVDKNSYVRYTRGGG 321
>gi|389608641|dbj|BAM17930.1| heterogeneous nuclear ribonucleoprotein [Papilio xuthus]
Length = 314
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 85/168 (50%), Gaps = 13/168 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS-CHVDAMAA 91
+F+G + T E++K + +G + ++ ++ D + + SRGF F+ +S H M
Sbjct: 20 IFIGGLNYRTTDESLKAHFEKWG--EIVDVVVMKDTKTK-RSRGFGFITYSKAH---MVD 73
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
+ +P + T + + ++ +PE A V+ +F+ G+ E+Q+R+
Sbjct: 74 DAQNNRPHTIDSRVVETKRAVARQDIK--NPEAGATVRKLFIGGIKDDHTEDQLREYFSN 131
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA-VACINA---INNKEF 195
YG+V + + + +T K++ +GF++F ++ C+NA IN K+
Sbjct: 132 YGNVQNVSIVTDKATGKKRGFGFVEFDDYDPVDKVCLNAPHKINGKQL 179
>gi|410957357|ref|XP_003985295.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0, partial
[Felis catus]
Length = 290
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 34 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 80
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 81 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 139
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 140 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 194
>gi|340382092|ref|XP_003389555.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A2 homolog
1-like [Amphimedon queenslandica]
Length = 344
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 101/232 (43%), Gaps = 37/232 (15%)
Query: 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDA 88
D+ LFVG + + T++ +++ ++YG + I L D G SRGFAF++F +
Sbjct: 55 DDHKLFVGGLTSDTTEQTLQEYFEEYGT--ISEIILKVD-PITGRSRGFAFLLFK---EN 108
Query: 89 MAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQ 148
A K L+ G K A + + ++ K VF+ GVP E+ I++
Sbjct: 109 DAVDKILEASPHTIGDKVVDTKKAIPHAVHQ---QMKQRTKKVFVGGVPTDMPEHTIKEH 165
Query: 149 IKGYGDVIRIVLARNM---STAKRKDYGFIDFSTHEAA-VACINAINNKEFSDGNSKVKL 204
+ +G + + L S KR+ + F+ F + + A AC N+ + SD +
Sbjct: 166 FEKFGPIEEVALVTEKGAGSNKKRRGFCFVTFLSEDTAEKACCNSFHKINESD------V 219
Query: 205 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRT--FSRYGRG------SGRAGH 248
+ + P + + R+ HG++ R GRG SGR GH
Sbjct: 220 EVKRATPREQDK----------RMSHGNAAPPFMGRGGRGHIMHAQSGRGGH 261
>gi|187956922|gb|AAI58075.1| EG627828 protein [Mus musculus]
gi|187956950|gb|AAI57905.1| EG627828 protein [Mus musculus]
gi|219521461|gb|AAI72011.1| EG627828 protein [Mus musculus]
Length = 351
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 27/204 (13%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 15 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 70
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 71 MCARPYKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA----AVACINAIN--NKEFSDGNSKV 202
+ YG + I + + + K++ + F+ F H+ V + IN N E SK
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Query: 203 KLRARLSNPMPKTQAVKGGMSGGF 226
++R+ S Q +GG SG F
Sbjct: 184 EMRSAGS------QRDRGGGSGNF 201
>gi|395834193|ref|XP_003790096.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Otolemur garnettii]
Length = 355
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 259
>gi|332019507|gb|EGI59986.1| Heterogeneous nuclear ribonucleoprotein 27C [Acromyrmex echinatior]
Length = 340
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 10/156 (6%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
LFVG + T+E +++ YG E I+ V E G SRGF FV FS +
Sbjct: 2 LFVGGLSWETTQENLQRYFGRYG----EVIDCVVMKNSESGRSRGFGFVTFSDPANVSLV 57
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
+ P + G RT+ P P+ VFL G+P + E +R
Sbjct: 58 LQN--GPHQLDG---RTIDPKPCNPRTLQKPKRSGGFPKVFLGGLPSNVTETDLRSYFTR 112
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
+G V+ +V+ + K + +GF+ F EA C+
Sbjct: 113 FGKVMEVVIMYDQEKKKSRGFGFLSFEDEEAVDRCV 148
>gi|256078322|ref|XP_002575445.1| apobec-1 complementation factor-related [Schistosoma mansoni]
gi|350644243|emb|CCD61005.1| apobec-1 complementation factor-related [Schistosoma mansoni]
Length = 771
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 20/168 (11%)
Query: 43 TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-V 101
++E I ++K +GV+++ + + +RGFAF+ + H A A ++L + +
Sbjct: 175 SEEEILSEMKRV-TDGVKDVISYPSVTDKTKNRGFAFIEYGSHKAAAMARRKLLPGHIHL 233
Query: 102 FGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQ-IKGYG----DVI 156
+GH + V +AEP RE + +IM+ VK +++ + E +RD IK G V
Sbjct: 234 WGH---QIAVDWAEPEREVNEDIMSKVKILYVRNLMLSTTEESLRDSFIKAAGGDPNSVE 290
Query: 157 RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204
R+ K DY FI F E A+ C++ +N+ + DG SK+++
Sbjct: 291 RV--------KKISDYAFIHFREREQALQCLHTLNDT-YIDG-SKIEV 328
>gi|149046822|gb|EDL99596.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_f [Rattus
norvegicus]
gi|149046823|gb|EDL99597.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_f [Rattus
norvegicus]
Length = 257
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + + ++ + G SRGF FV+F
Sbjct: 1 MFIGGL--SW--DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF--------- 47
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 48 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 106
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 107 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 161
>gi|324506631|gb|ADY42829.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 341
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 18/187 (9%)
Query: 37 NICNTWTKEAIKQKLKDYGVEGVENINLVS--DIQHEGLSRGFAFVMFSCHVDAMAAYKR 94
NI + +KE I + K++ EGV + + + D +RGF F+ F H A A ++
Sbjct: 7 NIPKSKSKEEILAEFKEH-TEGVVDCIIYTSPDAGANRKNRGFCFLDFCDHKAASDAKRK 65
Query: 95 LQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGD 154
+ + + + V +AE EPD E M+ VK +++ + E Q+++ +G+
Sbjct: 66 IHAGKLRPWNSDLVVD--WAEQQEEPDEETMSKVKVLYVRNLKEAVTEEQLKEMFAAHGE 123
Query: 155 VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPM-P 213
V R K +DY FI F E A+ + A+N + + L+ P
Sbjct: 124 VER--------AKKIRDYAFIHFKEREPALKAMEALNGTVLEG----IAIEISLAKPQGD 171
Query: 214 KTQAVKG 220
K + V+G
Sbjct: 172 KKKTVRG 178
>gi|211826253|gb|AAH11172.2| Hnrnpd protein [Mus musculus]
Length = 351
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 20/189 (10%)
Query: 23 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVM 81
A + +F+G + +W + K+ LKDY + E ++ + G SRGF FV+
Sbjct: 85 AAAAQREEWKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 140
Query: 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 141
F K + D V E + +P R + VK +F+ G+ P
Sbjct: 141 F----------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTP 190
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNS 200
E +IR+ G+G+V I L + T KR+ + FI F E + I K++ + G S
Sbjct: 191 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLS 246
Query: 201 KVKLRARLS 209
K +++ +S
Sbjct: 247 KCEIKVAMS 255
>gi|296196172|ref|XP_002745745.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0, partial
[Callithrix jacchus]
Length = 325
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 69 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 115
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 116 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 174
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 175 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 229
>gi|426232266|ref|XP_004010154.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Ovis aries]
Length = 421
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 20/180 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 165 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 211
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 212 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 270
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 210
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 271 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 326
>gi|403263352|ref|XP_003924001.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Saimiri boliviensis boliviensis]
Length = 355
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 259
>gi|74001715|ref|XP_857957.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 11
[Canis lupus familiaris]
Length = 355
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 259
>gi|148878011|gb|AAI46039.1| HNRNPD protein [Bos taurus]
Length = 355
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 259
>gi|187607268|ref|NP_001120028.1| heterogeneous nuclear ribonucleoprotein A3 [Xenopus (Silurana)
tropicalis]
gi|165971520|gb|AAI58334.1| LOC100144993 protein [Xenopus (Silurana) tropicalis]
gi|170284841|gb|AAI61197.1| LOC100144993 protein [Xenopus (Silurana) tropicalis]
Length = 383
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 20/198 (10%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 29 LFIGGLSFETTDDSLREHFEQWG--KLTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 84
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE AH VK +F+ G+ +E +RD
Sbjct: 85 MSARPHKVDGRVVEPKRAVS-------REDSARPGAHLTVKKIFVGGIKEDTEEYHLRDY 137
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS-KVKLRAR 207
+ YG + I + + + K++ + F+ F H+ ++ I +++ N +++
Sbjct: 138 FQSYGKIETIEVMEDRQSGKKRGFAFVTFDDHDT----VDKIVVQKYHTINGHNCEVKKA 193
Query: 208 LSNPMPKTQAVKGGMSGG 225
LS +T + + G GG
Sbjct: 194 LSKQEMQTASAQRGRGGG 211
>gi|14110420|ref|NP_112738.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Homo sapiens]
gi|386782249|ref|NP_001247736.1| heterogeneous nuclear ribonucleoprotein D0 [Macaca mulatta]
gi|114594005|ref|XP_001143807.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 3
[Pan troglodytes]
gi|297673867|ref|XP_002814969.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Pongo abelii]
gi|402869391|ref|XP_003898746.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Papio anubis]
gi|13124489|sp|Q14103.1|HNRPD_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein D0;
Short=hnRNP D0; AltName: Full=AU-rich element
RNA-binding protein 1
gi|870749|dbj|BAA09525.1| heterogeneous nuclear ribonucleoprotein D (hnRNP D) [Homo sapiens]
gi|2815612|gb|AAC23474.1| heterogeneous nuclear ribonucleoprotein D [Homo sapiens]
gi|12803191|gb|AAH02401.1| Heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Homo sapiens]
gi|63990762|gb|AAY40913.1| unknown [Homo sapiens]
gi|119626280|gb|EAX05875.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_d [Homo sapiens]
gi|119626281|gb|EAX05876.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_d [Homo sapiens]
gi|123982850|gb|ABM83166.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [synthetic construct]
gi|123997529|gb|ABM86366.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [synthetic construct]
gi|355687289|gb|EHH25873.1| Heterogeneous nuclear ribonucleoprotein D0 [Macaca mulatta]
gi|380783619|gb|AFE63685.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Macaca
mulatta]
gi|383417965|gb|AFH32196.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Macaca
mulatta]
gi|384940052|gb|AFI33631.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Macaca
mulatta]
Length = 355
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 259
>gi|410914421|ref|XP_003970686.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0-like
[Takifugu rubripes]
Length = 300
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 9/156 (5%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LFVG + E ++Q + YG + + +V + Q G SR F F+ +S +A A
Sbjct: 8 LFVGGLNVQTNDEGLRQYFEKYGQ--LSDCVVVMNNQL-GRSRCFGFITYSTPEEADTAM 64
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
P VV GH V++ A ++ D PE++A+VK +F+ GV H + + D
Sbjct: 65 A--ASPHVVDGH---NVELKRAVARQDADNPEVLANVKKIFVGGVQDHIEAQHLTDYFSQ 119
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
+G V + + + T K++ +GF+ F ++A +
Sbjct: 120 FGAVEKAEIISDKLTGKKRGFGFVFFVDTDSATKAV 155
>gi|410351149|gb|JAA42178.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 356
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 100 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 146
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 147 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 205
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 206 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 260
>gi|397524667|ref|XP_003832310.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein D0 [Pan paniscus]
Length = 355
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 259
>gi|332233349|ref|XP_003265864.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein D0 [Nomascus leucogenys]
Length = 355
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 259
>gi|71896513|ref|NP_001025523.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Xenopus (Silurana)
tropicalis]
gi|52355236|gb|AAU44811.1| AUF1 [Xenopus (Silurana) tropicalis]
Length = 295
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 20/204 (9%)
Query: 24 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMF 82
+ ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 31 SKTEEDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 86
Query: 83 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKE 142
K + D V E + +P R + VK +F+ G+ P E
Sbjct: 87 ----------KESEGVDKVMEQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPE 136
Query: 143 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSK 201
+IR+ +G++ I L + T KR+ + FI F + + I K++ + G SK
Sbjct: 137 EKIREYFGTFGEIEAIELPMDNKTNKRRGFCFITFKEEDP----VKKIMEKKYHNVGLSK 192
Query: 202 VKLRARLSNPMPKTQAVKGGMSGG 225
+++ LS + Q G GG
Sbjct: 193 CEIKVALSKEQYQQQQQWGTRGGG 216
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 22/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFG-----NILSCKVAQDETGASKGYGFVHYETDEAASQA 203
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L + V GH P++ + F E + A+ V++ + E+
Sbjct: 204 IKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE--------MKANFTNVYVKNIAADVTEDD 255
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R + YGDV LAR+ K + +GF++F+THE+A ++ +NNK+F
Sbjct: 256 FRQLFEKYGDVTSSSLARDQE-GKSRGFGFVNFTTHESAFKAVDELNNKDF 305
>gi|356576454|ref|XP_003556346.1| PREDICTED: RNA-binding protein Musashi homolog 2-like [Glycine max]
Length = 476
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 98/199 (49%), Gaps = 31/199 (15%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
D LF+G I T++ +K+ +YG V + +++ + ++ G RGF FV+F+ D
Sbjct: 3 SDQGKLFIGGISWDTTEDKLKEHFGNYGD--VLSTSVMRE-KNTGKPRGFGFVVFA---D 56
Query: 88 AMAAYKRLQKPDVVFGHPERTV--KVAFAEPLRE-------------PDPEIMAHVKT-- 130
+ L+ V+ G RTV K AF+ ++ + E +++T
Sbjct: 57 PNILDRVLEDKHVIDG---RTVDAKKAFSREDQQISVTSRGGNSNSGMNSENGGNIRTKK 113
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+PP E + R + YG V +V+ + +T + + +GFI F T EA ++ +
Sbjct: 114 IFVGGLPPTLTEEKFRLYFESYGHVTDVVVMYDQNTGRPRGFGFISFDTEEA----VDRV 169
Query: 191 NNKEFSDGNSK-VKLRARL 208
+K F D N K V+++ L
Sbjct: 170 LHKSFHDLNGKQVEVKRAL 188
>gi|345327974|ref|XP_001505245.2| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like
[Ornithorhynchus anatinus]
Length = 306
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 50 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 96
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 97 -KEAESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 155
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 156 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 210
>gi|116256512|ref|NP_001070733.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Mus musculus]
gi|33516945|sp|Q60668.2|HNRPD_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein D0;
Short=hnRNP D0; AltName: Full=AU-rich element
RNA-binding protein 1
gi|148688367|gb|EDL20314.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_d [Mus
musculus]
Length = 355
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 259
>gi|328724864|ref|XP_001951157.2| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
1 [Acyrthosiphon pisum]
Length = 442
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 12/162 (7%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHV 86
++ LFVG + +E++++ YG E I+ V E G SRGF FV F+
Sbjct: 10 DEQGKLFVGGLSWETQQESLQRYFNRYG----EVIDCVVMKNSESGRSRGFGFVTFA--- 62
Query: 87 DAMAAYKRLQK-PDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
D LQ P V+ G RT+ P P+ + VFL G+P + E +
Sbjct: 63 DPNNVNVVLQNGPHVLDG---RTIDPKPCNPRTLQKPKRSSSYPKVFLGGLPSNVTETDL 119
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
R YG V+ +V+ + K + +GF+ F +A C+
Sbjct: 120 RTFFSRYGKVMEVVIMYDQEKKKSRGFGFLSFEDDDAVDRCV 161
>gi|148909135|gb|ABR17668.1| unknown [Picea sitchensis]
Length = 411
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 12/188 (6%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+F+G + + T A + YG E +++ + + G RGF FV ++ D
Sbjct: 44 IFIGGLSRSTTSSAFTKHFSKYG-ELTDSVIMKDRLT--GQPRGFGFVTYA---DPSVID 97
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
K +Q ++ G +TV++ P + K VF+ G+P E++ +D +
Sbjct: 98 KVIQDKHILDG---KTVEIKRTIP--RGNSSKAPKTKKVFVGGIPTSITEDEFKDYFSKF 152
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPM 212
G V+ + ++ +T + + +GFI F T +A I+ E ++K +A P+
Sbjct: 153 GKVVEHQIMQDRNTGRSRGFGFITFETEQAVEEIISQGRMLELGGKQVEIK-KAEPKKPL 211
Query: 213 PKTQAVKG 220
P + G
Sbjct: 212 PDAGPIYG 219
>gi|15231284|ref|NP_190834.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314840|ref|NP_001030849.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7669940|emb|CAB89227.1| putative RNA binding protein [Arabidopsis thaliana]
gi|51970792|dbj|BAD44088.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|51971921|dbj|BAD44625.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|115646718|gb|ABJ17093.1| At3g52660 [Arabidopsis thaliana]
gi|332645455|gb|AEE78976.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645456|gb|AEE78977.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 471
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 83/177 (46%), Gaps = 7/177 (3%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GKR + ++ LF+GN+ W + IK+ G GV+ + L + Q+ G +RGFA
Sbjct: 160 GKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIG-PGVQIVELPKEPQNMGRNRGFA 218
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE-PLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A Y + + + F + V++AE + VK +++ +P
Sbjct: 219 FIEYYNH--ACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKALYIKNLP 276
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
+ +++ + +G ++++V+ + YGF+ ++ + + A+ N E
Sbjct: 277 RDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAER---TSVMRALKNTE 330
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 123 EIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 179
E++A H V+L G+P E ++ G+V + + R + K Y F+ F +
Sbjct: 83 ELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRS 142
Query: 180 HEAAVACINAINNKEF 195
+ A I+ +NN +F
Sbjct: 143 KDLAAEAIDTLNNTDF 158
>gi|328724866|ref|XP_003248272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
2 [Acyrthosiphon pisum]
Length = 432
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 12/162 (7%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHV 86
++ LFVG + +E++++ YG E I+ V E G SRGF FV F+
Sbjct: 10 DEQGKLFVGGLSWETQQESLQRYFNRYG----EVIDCVVMKNSESGRSRGFGFVTFA--- 62
Query: 87 DAMAAYKRLQK-PDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
D LQ P V+ G RT+ P P+ + VFL G+P + E +
Sbjct: 63 DPNNVNVVLQNGPHVLDG---RTIDPKPCNPRTLQKPKRSSSYPKVFLGGLPSNVTETDL 119
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
R YG V+ +V+ + K + +GF+ F +A C+
Sbjct: 120 RTFFSRYGKVMEVVIMYDQEKKKSRGFGFLSFEDDDAVDRCV 161
>gi|242006645|ref|XP_002424159.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Pediculus
humanus corporis]
gi|212507484|gb|EEB11421.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Pediculus
humanus corporis]
Length = 423
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 8/155 (5%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LFVG + T+EA+++ YG + V+ + V G SRGF FV F+ +
Sbjct: 21 LFVGGLSWETTQEALQRYFSRYG-DVVDCV--VMKNTESGRSRGFGFVTFADPTNVGVVL 77
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+ P V+ G RT+ P P+ VFL G+P + E +R Y
Sbjct: 78 QN--GPHVLDG---RTIDPKPCNPRTLSKPKRNNGYPKVFLGGLPSNVTETDLRQFFMRY 132
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
G V+ +V+ + K + +GF+ F +A C+
Sbjct: 133 GKVMEVVIMYDQEKKKSRGFGFLSFEDEDAVERCV 167
>gi|356535448|ref|XP_003536257.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Glycine max]
Length = 471
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 31/199 (15%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
D LF+G I T++ +K+ +YG V + +++ + ++ G RGF FV+F+ D
Sbjct: 3 SDQGKLFIGGISWDTTEDKLKEHFGNYGD--VLSTSVMRE-KNTGKPRGFGFVVFA---D 56
Query: 88 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH-----------------VKT 130
+ L+ V+ G RTV A + + + K
Sbjct: 57 PNILDRVLEDKHVIDG---RTVDAKKAFSREDQQISVTSRGGNSNSGMNSGNGGNIRTKK 113
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ G+PP E + R + YG+V +V+ + +T + + +GFI F T +A ++ +
Sbjct: 114 IFVGGLPPTLTEEKFRQYFESYGNVTDVVVMYDQNTGRPRGFGFISFDTEDA----VDRV 169
Query: 191 NNKEFSDGNSK-VKLRARL 208
+K F D N K V+++ L
Sbjct: 170 LHKSFHDLNGKQVEVKRAL 188
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 21/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 152 VFIKNLDTAIDNKALHDTFAAFG-----NILSCKVAQDETGASKGYGFVHYETDEAASQA 206
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L + V GH P++ + F E + A+ +++ +P + +
Sbjct: 207 IKHVNGMLLNEKKVFVGHHIPKKDRQSKFEE--------MKANFTNIYVKNIPVEATDEE 258
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R+ + +GDV LAR+ + K + +GF++F HE A ++ +N K+F
Sbjct: 259 FRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAKAVDELNGKDF 309
>gi|127138710|ref|NP_077380.2| heterogeneous nuclear ribonucleoprotein D0 isoform a [Rattus
norvegicus]
gi|149046816|gb|EDL99590.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_a [Rattus
norvegicus]
Length = 353
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + + ++ + G SRGF FV+F
Sbjct: 97 MFIGGL--SW--DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF--------- 143
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 144 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 202
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 203 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 257
>gi|356557128|ref|XP_003546870.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 20/171 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
L+VGNI T T + + + ++++G VE ++ D ++ G SR FAFV DA A
Sbjct: 72 LYVGNIPRTVTNDELAKIVQEHG--AVEKAEVMYD-KYSGRSRRFAFVTMKTVEDATAVI 128
Query: 93 KRLQKPDVVFGHPERTVKVAFAE-PLREPDPEIMAHVKTVFLDGVPPH------WKENQI 145
++L ++ R +KV E PL D ++ ++ F+D PH +
Sbjct: 129 EKLNGTEL----GGREIKVNVTEKPLSTLDLPLLQAEESEFIDS--PHKVYVGNLAKTVT 182
Query: 146 RDQIKGY----GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 192
D +K + G V+ ++R T+K YGF+ F + E A I++ NN
Sbjct: 183 TDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFPSEEDVEAAISSFNN 233
>gi|410896922|ref|XP_003961948.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
2-like [Takifugu rubripes]
Length = 336
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 19/187 (10%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ + + SRGF FV +SC + A
Sbjct: 15 LFIGGLSFETTEESLRAHFEKWG--SLTDCVVMREPACK-RSRGFGFVTYSCLREVDEAM 71
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQI 149
K R K D P+R V RE + AH VK +F+ G+ +E+QIRD
Sbjct: 72 KARPHKVDGRVVEPKRAVS-------REDSNKPGAHLSVKKIFVGGIKEDTEEDQIRDYF 124
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA------INNKEFSDGNSKVK 203
+ YG + + + S+ K++ + F+ F H+ + ++N E SK +
Sbjct: 125 EKYGKIECVDIMEERSSGKKRGFCFVTFDDHDTVDKIVAQKYHTINLHNCEVRKALSKQE 184
Query: 204 LRARLSN 210
+ A SN
Sbjct: 185 MNAISSN 191
>gi|356513961|ref|XP_003525676.1| PREDICTED: nuclear pore membrane glycoprotein 210-like [Glycine max]
Length = 2304
Score = 57.8 bits (138), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 10/174 (5%)
Query: 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAM 89
N +F+G + T I Q +K +G G +++ + G RGF F+ ++ D
Sbjct: 1975 NTKIFIGGLARETT---IAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYA---DPS 2028
Query: 90 AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQI 149
K ++ P ++ G + V++ P R K +F+ G+P + E++ RD
Sbjct: 2029 VVDKVIEDPHIING---KQVEIKRTIP-RGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFF 2084
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203
YG+V + R+ ST + + +GFI F + EA ++ N +F+ ++K
Sbjct: 2085 TRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIDFAGSQVEIK 2138
>gi|224106031|ref|XP_002314019.1| predicted protein [Populus trichocarpa]
gi|222850427|gb|EEE87974.1| predicted protein [Populus trichocarpa]
Length = 255
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 20/177 (11%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
SE L+VGNI T T E + + ++++G VE ++ D ++ G SR FAFV
Sbjct: 75 SEAARRLYVGNIPRTLTNEELTKIVEEHG--AVEKAEVMYD-KYSGRSRRFAFVTMKTAE 131
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAE-PLREPDPEIMAHVKTVFLDGVPPH------ 139
DA AA ++L ++ R +KV E PL+ D + ++ F+D P+
Sbjct: 132 DANAAIEKLNGTEI----GGREIKVNITEKPLQSLDLPSLQSDESQFVDS--PYKVYVGN 185
Query: 140 WKENQIRDQIKGY----GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 192
+ D +K + G+V+ ++R T+K +GF+ FS+ E I++ NN
Sbjct: 186 LAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEVAISSFNN 242
>gi|307136289|gb|ADN34116.1| heterogeneous nuclear ribonucleoprotein a1 [Cucumis melo subsp.
melo]
Length = 699
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
S + LFVG + T++ YG E +++ ++ +H G RGF FV F
Sbjct: 417 SSSSGKLFVGGVAWETTEDTFSDYFSKYG-EIADSVIMID--KHTGRPRGFGFVTF---C 470
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
D A L+ ++ G R V+V P + + ++++ K +F+ G+PP E + +
Sbjct: 471 DPAIADMVLKIDHIIDG---RAVEVKRTVPRADMNDKMVSRTKKIFVGGIPPGLTEVEFK 527
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
D +G +I + + T + + +GFI F ++
Sbjct: 528 DYFSSFGRIIEHQIMIDYKTKRSRGFGFITFENEDSV 564
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 22/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFG-----NILSCKVAQDETGASKGYGFVHYETDEAASQA 203
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L + V GH P++ + F E + A+ V++ + E+
Sbjct: 204 IKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE--------MKANFTNVYVKNIAADVTEDD 255
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R + YGDV LAR+ K + +GF++F+THE+A ++ +NNK+F
Sbjct: 256 FRQLFEKYGDVTSSSLARDQE-GKSRGFGFVNFTTHESASKAVDELNNKDF 305
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 13/165 (7%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
+++ +L+VG + + T+ + + G V +I + D S G+A+V ++ D
Sbjct: 56 QNSASLYVGELDPSVTEAMLFELFSQIGA--VASIRVCRDAVTR-RSLGYAYVNYNATPD 112
Query: 88 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK-TVFLDGVPPHWKENQIR 146
A + L ++ G P R + + DP + + VF+ + +
Sbjct: 113 GEKALEELNY-TIIKGRPCRIM-------WSQRDPALRKTGQGNVFIKNLDVAIDNKALH 164
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191
D +G+++ +A++ T K YGF+ + T EAA I +N
Sbjct: 165 DTFAAFGNILSCKVAQD-ETGASKGYGFVHYETDEAASQAIKHVN 208
>gi|380017405|ref|XP_003692647.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like [Apis
florea]
Length = 439
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 18/165 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHV 86
++ LFVG + T+E +++ YG E I+ V E G SRGF FV FS
Sbjct: 10 DEKGKLFVGGLSWETTQENLQRYFGRYG----EVIDCVVMKNSESGRSRGFGFVTFSDPA 65
Query: 87 DAMAAYKRLQKPDVVFGHPE----RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKE 142
+ P V+ P RT+ P + P+ VFL G+P + E
Sbjct: 66 NV---------PLVLQNGPHQLDGRTIDPKPCNPRTQQKPKRSGGFPKVFLGGLPSNVTE 116
Query: 143 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
+R +G V+ +V+ + K + +GF+ F +A C+
Sbjct: 117 TDLRSFFTRFGKVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCV 161
>gi|94482853|gb|ABF22468.1| heterogeneous nuclear ribonucleoprotein A3 [Takifugu rubripes]
Length = 341
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 19/187 (10%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ + + SRGF FV +SC + A
Sbjct: 20 LFIGGLSFETTEESLRAHFEKWG--SLTDCVVMREPACK-RSRGFGFVTYSCLREVDEAM 76
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQI 149
K R K D P+R V RE + AH VK +F+ G+ +E+QIRD
Sbjct: 77 KARPHKVDGRVVEPKRAVS-------REDSNKPGAHLSVKKIFVGGIKEDTEEDQIRDYF 129
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA------INNKEFSDGNSKVK 203
+ YG + + + S+ K++ + F+ F H+ + ++N E SK +
Sbjct: 130 EKYGKIECVDIMEERSSGKKRGFCFVTFDDHDTVDKIVAQKYHTINLHNCEVRKALSKQE 189
Query: 204 LRARLSN 210
+ A SN
Sbjct: 190 MNAISSN 196
>gi|13124487|sp|Q9JJ54.1|HNRPD_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein D0;
Short=hnRNP D0; AltName: Full=AU-rich element
RNA-binding protein 1
gi|9588096|dbj|BAB03465.1| RNA binding protein p45AUF1 [Rattus norvegicus]
Length = 353
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + + ++ + G SRGF FV+F
Sbjct: 97 MFIGGL--SW--DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF--------- 143
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 144 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 202
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 203 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 257
>gi|410976696|ref|XP_003994750.1| PREDICTED: probable RNA-binding protein 19 [Felis catus]
Length = 994
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 9/166 (5%)
Query: 32 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 91
TLF+ N+ T T+E +K+ G+ +++ + E LS GF FV + A A
Sbjct: 723 TLFIKNLNFTTTEETLKEVFSRVGMVKSCSVSKKKNKTGELLSMGFGFVEYRKPEQAQKA 782
Query: 92 YKRLQKPDVVFGH------PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
K+LQ +V GH ER K A ++ P K + + +P +I
Sbjct: 783 LKQLQG-HIVDGHKLEVRISERATKPALTSARKKQVPRKQTTSK-ILVRNIPFQADSREI 840
Query: 146 RDQIKGYGDVIRIVLARNMS-TAKRKDYGFIDFSTHEAAVACINAI 190
R+ +G++ + L + MS T + +GF+DF T + A +A+
Sbjct: 841 RELFSTFGELKTVRLPKKMSGTGSHRGFGFVDFLTKQDAKRAFHAL 886
>gi|350406107|ref|XP_003487656.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like [Bombus
impatiens]
Length = 426
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 18/165 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHV 86
++ LFVG + T+E +++ YG E I+ V E G SRGF FV FS
Sbjct: 10 DEKGKLFVGGLSWETTQENLQRYFGRYG----EVIDCVVMKNSESGRSRGFGFVTFSDPA 65
Query: 87 DAMAAYKRLQKPDVVFGHPE----RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKE 142
+ P V+ P RT+ P + P+ VFL G+P + E
Sbjct: 66 NV---------PLVLQNGPHQLDGRTIDPKPCNPRTQQKPKRSGGFPKVFLGGLPSNVTE 116
Query: 143 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
+R +G V+ +V+ + K + +GF+ F +A C+
Sbjct: 117 TDLRSFFTRFGKVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCV 161
>gi|221057546|ref|XP_002261281.1| Polyadenylate binding protein [Plasmodium knowlesi strain H]
gi|194247286|emb|CAQ40686.1| Polyadenylate binding protein, putative [Plasmodium knowlesi strain
H]
Length = 392
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 89/186 (47%), Gaps = 12/186 (6%)
Query: 24 TAPSEDND--TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM 81
T P+ +N TLFV + W + + K K +G +E+ + +++ S+G+ FV+
Sbjct: 109 TQPNSENKKTTLFVFYLPPHWNDQDLFDKFKIFG--NLESATVAK--KNDKTSKGYGFVV 164
Query: 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 141
++ A A + K +V H + +KV E + + + T+F+ +P W
Sbjct: 165 YTDPHSATMAISNMNKVEV---HAGKRLKVLLKSSSNENNKKKIKPGCTIFVFYLPNDWS 221
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201
+ ++ YG+++ + R + K + YGFI+F ++A+ + +N F+ GN
Sbjct: 222 DKDLKRHFSHYGNILGATIKRE-TNGKSRGYGFINFENQQSAINAVAGMNG--FNAGNKY 278
Query: 202 VKLRAR 207
+K+ +
Sbjct: 279 LKVSIK 284
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 88/203 (43%), Gaps = 20/203 (9%)
Query: 31 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF----SCH- 85
+++FV N WT+ I+ +G + N+ + DI +A++ F +C
Sbjct: 18 NSIFVYNFPTEWTENDIQNNFMIFGT--INNVIIDKDINM------YAYIQFHDGEACQK 69
Query: 86 -VDAM----AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHW 140
++ M + K L+ + + E ++ P T+F+ +PPHW
Sbjct: 70 AIEVMNGKEVSGKVLKVTNRKLVEECMDMNSTNIETPQKTQPNSENKKTTLFVFYLPPHW 129
Query: 141 KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 200
+ + D+ K +G++ +A+ + K YGF+ ++ +A I+ +N E G
Sbjct: 130 NDQDLFDKFKIFGNLESATVAKK-NDKTSKGYGFVVYTDPHSATMAISNMNKVEVHAG-K 187
Query: 201 KVKLRARLSNPMPKTQAVKGGMS 223
++K+ + S+ + +K G +
Sbjct: 188 RLKVLLKSSSNENNKKKIKPGCT 210
>gi|328779568|ref|XP_393451.4| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like [Apis
mellifera]
Length = 442
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 18/165 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHV 86
++ LFVG + T+E +++ YG E I+ V E G SRGF FV FS
Sbjct: 10 DEKGKLFVGGLSWETTQENLQRYFGRYG----EVIDCVVMKNSESGRSRGFGFVTFSDPA 65
Query: 87 DAMAAYKRLQKPDVVFGHPE----RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKE 142
+ P V+ P RT+ P + P+ VFL G+P + E
Sbjct: 66 NV---------PLVLQNGPHQLDGRTIDPKPCNPRTQQKPKRSGGFPKVFLGGLPSNVTE 116
Query: 143 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
+R +G V+ +V+ + K + +GF+ F +A C+
Sbjct: 117 TDLRSFFTRFGKVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCV 161
>gi|340723465|ref|XP_003400110.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like [Bombus
terrestris]
Length = 443
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 18/165 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHV 86
++ LFVG + T+E +++ YG E I+ V E G SRGF FV FS
Sbjct: 10 DEKGKLFVGGLSWETTQENLQRYFGRYG----EVIDCVVMKNSESGRSRGFGFVTFSDPA 65
Query: 87 DAMAAYKRLQKPDVVFGHPE----RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKE 142
+ P V+ P RT+ P + P+ VFL G+P + E
Sbjct: 66 NV---------PLVLQNGPHQLDGRTIDPKPCNPRTQQKPKRSGGFPKVFLGGLPSNVTE 116
Query: 143 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
+R +G V+ +V+ + K + +GF+ F +A C+
Sbjct: 117 TDLRSFFTRFGKVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCV 161
>gi|119626277|gb|EAX05872.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_a [Homo sapiens]
Length = 377
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 259
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 24/191 (12%)
Query: 17 ICGKRCGTAPSEDNDTLF---VGNICNTWTKEAI--KQKLKDYGVEG-VENINLVSDIQH 70
I GK C S+ + +L VGNI EAI KQ + + G + + +V+D +
Sbjct: 105 IKGKPCRIMWSQRDPSLRRSGVGNIFVKNLNEAIDNKQLYDTFSLFGNILSCKVVTD-RE 163
Query: 71 EGLSRGFAFVMFSCHVDAMAAYKRLQK-----PDVVFGHPERTVKVAFAEPLREPDPEIM 125
G+S G+ +V + A AA ++L +V GH R R P+I
Sbjct: 164 GGVSMGYGYVHYETAEAANAAIEKLDGMLIDGQEVQVGHFMR----------RNDRPDID 213
Query: 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 185
+ ++ VP W + ++ + +G+V+ ++R T + +GFI+F+ HE+AVA
Sbjct: 214 SWTN-CYIKNVPYEWDDARLNQEFAQFGEVLSATVSRE-DTNQTLGFGFINFAEHESAVA 271
Query: 186 CINAINNKEFS 196
+ A+N KE++
Sbjct: 272 AVEALNGKEYT 282
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 79/191 (41%), Gaps = 21/191 (10%)
Query: 34 FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK 93
++ N+ W + Q+ +G E ++ + + GF F+ F+ H A+AA +
Sbjct: 219 YIKNVPYEWDDARLNQEFAQFG----EVLSATVSREDTNQTLGFGFINFAEHESAVAAVE 274
Query: 94 RLQKPD--VVFGHPERT--VKVAFAEPLREPDPEIMAHVKTVFLD------GVPPHWK-- 141
L + E T + V A+ E + E+ A + +D GV + K
Sbjct: 275 ALNGKEYTTTLDGEEITQQIYVGRAQKKSERERELRAKFEAEKMDRISKFQGVNLYVKNL 334
Query: 142 -----ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
++ +RD+ G + + ++ + + +GF+ +ST E + +N +N K +
Sbjct: 335 DDSVTDDMLRDEFAVMGTITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVNEMNGKLIA 394
Query: 197 DGNSKVKLRAR 207
+ V L R
Sbjct: 395 NKPIFVALAQR 405
>gi|156376666|ref|XP_001630480.1| predicted protein [Nematostella vectensis]
gi|156217502|gb|EDO38417.1| predicted protein [Nematostella vectensis]
Length = 305
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 26/190 (13%)
Query: 27 SEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS---RGFAFVM 81
++D+D LFVG + TKE++K+ YG E + + DI+ + L+ RGFAFV
Sbjct: 23 TKDDDIGKLFVGGLSYETTKESLKEYFSKYG----ELVGV--DIKMDALTGRPRGFAFVQ 76
Query: 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 141
F +A A ++ P V+ G RT+ A P+ +P P + VK +F+ G+ P
Sbjct: 77 FKHQSEADAVLNQVD-PHVLDG---RTIDPKPAAPIGKP-PHL--RVKKIFVGGLKPETS 129
Query: 142 ENQIRDQI-KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF--SDG 198
+ +IR+ K Y V I S+ +R+ + F+ F + + ++ I +F +G
Sbjct: 130 DEKIREYFGKAYAPVKEIEYITEHSSNRRRGFCFVSFDSED----TVDKICETQFHNIEG 185
Query: 199 NSKVKLRARL 208
N KV+++ L
Sbjct: 186 N-KVEVKRAL 194
>gi|359488537|ref|XP_003633774.1| PREDICTED: uncharacterized protein LOC100853981 [Vitis vinifera]
Length = 787
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 14/175 (8%)
Query: 17 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV-------SDIQ 69
+ GK+ G PS D TLF GN+ W+ + K+ + V +++L + +
Sbjct: 242 VEGKKIGVVPSTDQTTLFFGNLPKDWSPDEF-DKMVCQAFQDVTSVDLAMPFGSGDTSLG 300
Query: 70 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 129
+ +RGFAFV FS H A A++ K D + G V EP E DPE +A +
Sbjct: 301 QKQQNRGFAFVKFSSHAAAARAHRMGSKSDFLLGDSWHPVVEWAEEP--EIDPEELAKIT 358
Query: 130 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 184
F+ +P E+ ++ +G V +++L++ + GF+ F+ +
Sbjct: 359 IAFVGNLPKDANEDYLKKLFGPFGKVEKVLLSKK----GQSPVGFVHFAKRSCLL 409
>gi|308465164|ref|XP_003094843.1| CRE-HRP-1 protein [Caenorhabditis remanei]
gi|308246407|gb|EFO90359.1| CRE-HRP-1 protein [Caenorhabditis remanei]
Length = 344
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 9/156 (5%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG + + T E +++ +G + +I ++ D + SRGF FV F+ + AA
Sbjct: 25 IFVGGLTSNTTDELMREFYSQFG--EITDIIVMRDPTTK-RSRGFGFVTFTAKTEVDAAM 81
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K Q+P V+ G +TV A P + + E K +++ GV E+ + D
Sbjct: 82 K--QRPHVIDG---KTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHNEDMLTDYFSK 136
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
YG+V + + + +T K + +GF+ F H++ C+
Sbjct: 137 YGNVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 172
>gi|444728034|gb|ELW68498.1| Heterogeneous nuclear ribonucleoprotein R [Tupaia chinensis]
Length = 160
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 38 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 96
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMA 126
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA
Sbjct: 97 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMA 142
>gi|238006198|gb|ACR34134.1| unknown [Zea mays]
gi|413924828|gb|AFW64760.1| hypothetical protein ZEAMMB73_682858 [Zea mays]
Length = 499
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 90/192 (46%), Gaps = 8/192 (4%)
Query: 3 QLFLIYILIFPLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 62
++ L I K + GK+ + S+ + LF+GN+ + WT + K +++ G GV +
Sbjct: 152 EMALKAIQKLSNKDLKGKKIKVSSSQAKNRLFIGNVPHDWTPDDFKTAVEEVG-PGVLKV 210
Query: 63 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP 122
+L+ G ++G+ F+ + A A +++ P+ F V++A+ +
Sbjct: 211 DLMK-APGSGRNKGYGFIEYYNQACAEYAKQKMSTPE--FKLDTNAPTVSWADHKNASEA 267
Query: 123 EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA 182
+ VK++++ +P + Q++ + G++ ++V+ S + + YGF+ F
Sbjct: 268 TSTSQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENR-YGFVHFKERS- 325
Query: 183 AVACINAINNKE 194
+ A+ N E
Sbjct: 326 --MVMKALKNTE 335
>gi|413924827|gb|AFW64759.1| hypothetical protein ZEAMMB73_682858 [Zea mays]
Length = 509
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 90/192 (46%), Gaps = 8/192 (4%)
Query: 3 QLFLIYILIFPLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 62
++ L I K + GK+ + S+ + LF+GN+ + WT + K +++ G GV +
Sbjct: 162 EMALKAIQKLSNKDLKGKKIKVSSSQAKNRLFIGNVPHDWTPDDFKTAVEEVG-PGVLKV 220
Query: 63 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP 122
+L+ G ++G+ F+ + A A +++ P+ F V++A+ +
Sbjct: 221 DLMK-APGSGRNKGYGFIEYYNQACAEYAKQKMSTPE--FKLDTNAPTVSWADHKNASEA 277
Query: 123 EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA 182
+ VK++++ +P + Q++ + G++ ++V+ S + + YGF+ F
Sbjct: 278 TSTSQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENR-YGFVHFKERS- 335
Query: 183 AVACINAINNKE 194
+ A+ N E
Sbjct: 336 --MVMKALKNTE 345
>gi|345489599|ref|XP_003426177.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
2 [Nasonia vitripennis]
Length = 445
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 12/162 (7%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHV 86
++ LFVG + T+E +++ YG E I+ V E G SRGF FV FS
Sbjct: 10 DEKGKLFVGGLSWETTQENLQRYFSRYG----EVIDCVVMKNSESGRSRGFGFVTFS--- 62
Query: 87 DAMAAYKRLQK-PDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
D LQ P + G RT+ P P+ VFL G+P + E +
Sbjct: 63 DPSNVGLVLQNGPHQLDG---RTIDPKPCNPRTLQKPKRSGGFPKVFLGGLPSNVTETDL 119
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
R + +G V+ +V+ + K + +GF+ F +A C+
Sbjct: 120 RSFFQRFGKVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCV 161
>gi|388513547|gb|AFK44835.1| unknown [Medicago truncatula]
Length = 294
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 104/256 (40%), Gaps = 44/256 (17%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+F GN+ + +++ + YG ++ ++L S GFAF+ DA A
Sbjct: 4 IFCGNLDFDARQSDVERLFRKYGK--IDRVDLKS---------GFAFIYMEDERDAEYAI 52
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLRE---------PDPEIMAHVKTVFLDGVPP-HWKE 142
+RL + FG R ++V + + R+ KT+F+ P H +
Sbjct: 53 RRLDQ--TEFGRKGRRIRVGWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRT 110
Query: 143 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202
+ YG + + + RN + FI F T E A + A N +F D V
Sbjct: 111 RDLERHFDPYGKISNLRIRRN--------FAFIQFETQEEATKALEATNLSKFMDRVITV 162
Query: 203 KLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGS--GRAGHHFNRANFQRGRG 260
+ R + VK R G GS RYGRGS GR G + + ++RGRG
Sbjct: 163 EYAIRDDD-------VKRDGYSPDRRGRGS--PDGRYGRGSPDGRYGRGRSPSPYRRGRG 213
Query: 261 FYQHGR--NHSSRMGP 274
+GR N +SR P
Sbjct: 214 SPDYGRGSNPASRPEP 229
>gi|217071698|gb|ACJ84209.1| unknown [Medicago truncatula]
Length = 294
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 104/256 (40%), Gaps = 44/256 (17%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+F GN+ + +++ + YG ++ ++L S GFAF+ DA A
Sbjct: 4 IFCGNLDFDARQSDVERLFRKYGK--IDRVDLKS---------GFAFIYMEGERDAEYAI 52
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLRE---------PDPEIMAHVKTVFLDGVPP-HWKE 142
+RL + FG R ++V + + R+ KT+F+ P H +
Sbjct: 53 RRLDQ--TEFGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRT 110
Query: 143 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202
+ YG + + + RN + FI F T E A + A N +F D V
Sbjct: 111 RDLERHFDPYGKISNLRIRRN--------FAFIQFETQEEATKALEATNLSKFMDRVITV 162
Query: 203 KLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGS--GRAGHHFNRANFQRGRG 260
+ R + VK R G GS RYGRGS GR G + + ++RGRG
Sbjct: 163 EYAIRDDD-------VKRDGYSPDRRGRGS--PDGRYGRGSPDGRYGRGRSPSPYRRGRG 213
Query: 261 FYQHGR--NHSSRMGP 274
+GR N +SR P
Sbjct: 214 SPDYGRGSNPASRPEP 229
>gi|390470311|ref|XP_003734270.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
2 [Callithrix jacchus]
Length = 191
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ H +E +RD
Sbjct: 93 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEHTEEYNLRDY 145
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 146 FENYGKIETIEVMEDRQSGKKRGFAFVAFDDHDTV 180
>gi|346703354|emb|CBX25451.1| hypothetical_protein [Oryza glaberrima]
Length = 558
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
S+ + LF+GN+ ++WT + ++ +++ G GV +L+ + +RG+ FV + H
Sbjct: 240 SQAKNKLFIGNVPHSWTDDDFRKAVEEVG-PGVLKADLMK-VSSANRNRGYGFVEYYNH- 296
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
A A Y R + F V++A+P VK+V++ +P + + Q++
Sbjct: 297 -ACAEYARQEMSSPTFKLDSNAPTVSWADPKNNDSASTSQVVKSVYVKNLPKNVTQAQLK 355
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206
+ +G++ ++VL + + YGF+ F A + A+ N E + + +V L
Sbjct: 356 RLFEHHGEIEKVVLPPSRGGHDNR-YGFVHFKDRSMA---MRALQNTERYELDGQV-LDC 410
Query: 207 RLSNP 211
L+ P
Sbjct: 411 SLAKP 415
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFG-----NILSCKVAQDETGASKGYGFVHYETDEAAAQA 203
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDP---EIMAHVKTVFLDGVPPHWKENQIRDQ 148
K + ++ E+ V V + P ++ E+ A+ V++ + P +N+ R+
Sbjct: 204 IKHVN--GMLLN--EKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNISPDVTDNEFREL 259
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+ YGDV LAR+ K + +GF++F+THEAA ++ +N +F
Sbjct: 260 FEKYGDVTSSSLARDQE-GKSRGFGFVNFTTHEAAYKAVDELNGNDF 305
>gi|189234126|ref|XP_969016.2| PREDICTED: similar to mammalian A1, A2 /B1 hnRNP homologue
[Tribolium castaneum]
gi|270002487|gb|EEZ98934.1| hypothetical protein TcasGA2_TC004556 [Tribolium castaneum]
Length = 338
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 11/151 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS-CHVDAMAA 91
LF+G + T E++K+ + +G + ++ ++ D + SRGF F+ +S H+ A
Sbjct: 21 LFIGGLDYRTTDESLKKHFEKWGE--IVDVVVMKDPTTK-RSRGFGFITYSRAHMVDDAQ 77
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V P ++ PE A VK +F+ G+ +E +R+ K
Sbjct: 78 NDRPHKVDGRVVEPKRAV------PRQDIGRPEAGATVKKLFVGGLKDDVEEEDLRECFK 131
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 181
YG ++ + + T K++ +GFI+F ++
Sbjct: 132 SYGTILSCTIVTDKDTGKKRGFGFIEFEDYD 162
>gi|255574941|ref|XP_002528377.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
gi|223532245|gb|EEF34049.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
Length = 470
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 27/200 (13%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVE-GVENINLVSDIQHEGLSRGFAFVMFSCHV 86
D LF+G I +W E + KLKDY V+ G +V + G RGF FV+F+
Sbjct: 3 SDQGKLFIGGI--SW--ETTEDKLKDYFVQYGDVVQTVVMRDKTTGRPRGFGFVVFA--- 55
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAE------------PLREPDPEIMAHVKTVFLD 134
D + LQ + G K E P R K +F+
Sbjct: 56 DPNILDRVLQDKHTIDGRTVEAKKALSREEQQTNARSGNLNPPRNSGSGGNIRTKKIFVG 115
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
G+PP +++ R + YG V +V+ + +T + + +GFI F +A ++ + +K
Sbjct: 116 GLPPALTDDEFRQYFEAYGLVTDVVIMYDQNTQRPRGFGFISFDNEDA----VDRVLHKT 171
Query: 195 FSDGNSKVKLRARLSNPMPK 214
F D N K + + +PK
Sbjct: 172 FHDLNGK---QVEVKRALPK 188
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 87/200 (43%), Gaps = 24/200 (12%)
Query: 6 LIYILIF--PLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENIN 63
L Y LI P + + +R +F+ N+ +A+ +G NI
Sbjct: 120 LNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFG-----NIL 174
Query: 64 LVSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAE 115
Q E G S+G+ FV + A A K L + V GH P++ + F E
Sbjct: 175 SCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE 234
Query: 116 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 175
+ A+ V++ + P E+ R+ + +GDV LAR+ K + +GF+
Sbjct: 235 --------MKANFTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQE-GKSRGFGFV 285
Query: 176 DFSTHEAAVACINAINNKEF 195
+F+THE+A ++ +N K+F
Sbjct: 286 NFTTHESASKAVDDLNGKDF 305
>gi|350580575|ref|XP_003480852.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
scrofa]
Length = 349
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 15/153 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS--CHVDAMA 90
LF+G +C+ T+++++ + +G + + ++ D ++ SRGF FV FS VDA
Sbjct: 23 LFIGGLCSRTTEKSLRNYYQQWG--KLTDCVVLRDPSNK-RSRGFGFVTFSSVAEVDAAM 79
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
A R D P+R V RE + AH VK +F+ G+ +E+ +RD
Sbjct: 80 A-ARPHSVDGKVVDPKRAV-------AREESEKPGAHLAVKKLFVGGIKEDTEEHHLRDY 131
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 181
+ YG + I + + + K++ +GF+ F H+
Sbjct: 132 FEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164
>gi|328709829|ref|XP_001950969.2| PREDICTED: heterogeneous nuclear ribonucleoprotein 87F-like
[Acyrthosiphon pisum]
Length = 349
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 79/156 (50%), Gaps = 10/156 (6%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T T +++K+ + +G + ++ ++ D Q + SRGF F+ +S +M
Sbjct: 12 LFIGGLNYTTTNDSLKEFFEQWGE--IVDVVVMKDPQTK-RSRGFGFITYSQS--SMVDQ 66
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
+P + G R V+ A P + D P+I A VK +F+ G+ EN + +
Sbjct: 67 AMSNRPHKIDG---REVETKRAVPRDDIDKPDIAATVKKMFVSGIKEQ-SENDLLEYFGK 122
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
+G++ + + + + +RK +GFI++ ++ +
Sbjct: 123 FGNITNVTIVTDKDSGQRKGFGFIEYDDTDSVDKAV 158
>gi|388500070|gb|AFK38101.1| unknown [Lotus japonicus]
gi|388508218|gb|AFK42175.1| unknown [Lotus japonicus]
Length = 373
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 85/187 (45%), Gaps = 11/187 (5%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+F+G + T I Q +K +G G +++ + RGF F+ ++ D
Sbjct: 47 IFIGGLARETT---IAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYA---DPSVVD 100
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
K ++ ++ G + V++ P R K +F+ G+P + E++ RD Y
Sbjct: 101 KVIEDTHIING---KQVEIKRTIP-RGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRY 156
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPM 212
G+V + R+ ST + + +GFI F + +A ++ N +F+ ++K +A P
Sbjct: 157 GEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEIK-KAEPKKPN 215
Query: 213 PKTQAVK 219
P T + K
Sbjct: 216 PPTPSSK 222
>gi|345489601|ref|XP_001600266.2| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
1 [Nasonia vitripennis]
Length = 376
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 12/162 (7%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHV 86
++ LFVG + T+E +++ YG E I+ V E G SRGF FV FS
Sbjct: 10 DEKGKLFVGGLSWETTQENLQRYFSRYG----EVIDCVVMKNSESGRSRGFGFVTFS--- 62
Query: 87 DAMAAYKRLQK-PDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
D LQ P + G RT+ P P+ VFL G+P + E +
Sbjct: 63 DPSNVGLVLQNGPHQLDG---RTIDPKPCNPRTLQKPKRSGGFPKVFLGGLPSNVTETDL 119
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
R + +G V+ +V+ + K + +GF+ F +A C+
Sbjct: 120 RSFFQRFGKVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCV 161
>gi|328850756|gb|EGF99917.1| hypothetical protein MELLADRAFT_118186 [Melampsora larici-populina
98AG31]
Length = 667
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
S D LFVG + + +K++ + +G V + ++++ E S+GF +V F+
Sbjct: 397 SGDIKNLFVGGLSWNVDDDWLKKEFEKFG--EVISARVITERGTE-RSKGFGYVDFASPE 453
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP---------EIMAHVKTVFLDGVP 137
DA A + + ++ RT+ V F+ P E P E+ A T+F+ +P
Sbjct: 454 DARKAVEAMAGTEI----DGRTINVDFSAPKPERPPQEKRSFGQEELSAPTTTLFIGNLP 509
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188
++ + + YGD+ + L + T + K +G+++F+T EAA A +N
Sbjct: 510 FSATQDSVYEAFSEYGDINSVRLPTDPETERIKGFGYVEFATQEAATAAVN 560
>gi|413934320|gb|AFW68871.1| hypothetical protein ZEAMMB73_260152, partial [Zea mays]
Length = 459
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%)
Query: 124 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
I A K V+L+ VP W EN++++ + YG++++ + + + + F++FS+ + A
Sbjct: 161 IYAQAKIVYLEHVPLSWDENKVKEYCEEYGEILKADVFQISKNMENETISFVEFSSRKGA 220
Query: 184 VACINAINNKEFSDGNSKV 202
+AC+ IN DG+ K+
Sbjct: 221 LACVTGINKANIVDGSFKL 239
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Query: 51 LKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 110
LK G++ E +S ++G SRGFAF+ F+ H A AA +RL K D +FG +R+ K
Sbjct: 5 LKSIGIQECE----ISFPSYKGGSRGFAFLKFTSHYYARAALRRLMKSDAIFG-TDRSAK 59
Query: 111 VAF 113
V+F
Sbjct: 60 VSF 62
>gi|213513508|ref|NP_001134615.1| Heterogeneous nuclear ribonucleoprotein A3 homolog 2 [Salmo salar]
gi|209734656|gb|ACI68197.1| Heterogeneous nuclear ribonucleoprotein A3 homolog 2 [Salmo salar]
Length = 339
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 24/202 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ----HEGLSRGFAFVMFSC--HV 86
LF+G + T+E+++ + +G NL + + SRGF FV +SC V
Sbjct: 15 LFIGGLSFETTEESLRIHFEQWG-------NLTDSVVMRDPNNKRSRGFGFVTYSCVEEV 67
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQ 144
DA A R K D P+R V RE AH VK +F+ G+ +E+
Sbjct: 68 DACMA-ARPHKVDGRVVEPKRAVS-------REDSNRPGAHLTVKKIFVGGIKEDTREDH 119
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204
IR+ + YG + I + +T K++ + F+ F ++ V I A + N +V+
Sbjct: 120 IREYFETYGRIETIDIMEERATGKKRGFCFVSFDDND-TVDKIVAQKYHTINSHNCEVRK 178
Query: 205 RARLSNPMPKTQAVKGGMSGGF 226
Q +GG SG F
Sbjct: 179 ALPKQEMEASNQRNRGGGSGNF 200
>gi|390470313|ref|XP_002755160.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
1 [Callithrix jacchus]
Length = 186
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ H +E +RD
Sbjct: 93 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEHTEEYNLRDY 145
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 146 FENYGKIETIEVMEDRQSGKKRGFAFVAFDDHDTV 180
>gi|312377573|gb|EFR24379.1| hypothetical protein AND_11086 [Anopheles darlingi]
Length = 405
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 13/154 (8%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
LFVG + T E +++ YG E I+ V +E G SRGF FV F+ D
Sbjct: 14 LFVGGLSWETTHENLQRYFSRYG----EVIDCVVMKNNETGRSRGFGFVTFA---DPENV 66
Query: 92 YKRLQK-PDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
+ L+ P + G RT+ P + P+ VFL G+PP+ E +R
Sbjct: 67 DRALENGPHTLDG---RTIDPKPCNPRSQHKPKRTGGYPKVFLGGLPPNITETDLRSFFC 123
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 184
YG+V+ +V+ + K + +GF+ F +E AV
Sbjct: 124 RYGNVMEVVIMYDQEKKKSRGFGFLSFE-NEVAV 156
>gi|395816803|ref|XP_003781879.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Otolemur
garnettii]
Length = 532
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 23/200 (11%)
Query: 27 SEDNDT---LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF- 82
S+D T +F+G + +K + + L +G E V+ I + G SRGF FV+F
Sbjct: 103 SKDQQTDGKMFIGGLSWDTSKRDLTEYLSRFG-EVVDCIIKTDPVS--GRSRGFGFVLFK 159
Query: 83 -SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 141
+ VD + K K D P+R A+PL+E +P K VF+ G+ P
Sbjct: 160 DAASVDKVLELKE-HKLDGKLIDPQR------AKPLKEKEPP-----KKVFVGGLSPDTS 207
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201
+ QI+D +G++ I L R+ T +R+ + F+ ++ E + ++ G+ K
Sbjct: 208 KEQIKDYFGAFGEIENIELPRDRKTNERRGFCFVTYTEGEPVK---KLLESRYHHIGSGK 264
Query: 202 VKLRARLSNPMPKTQAVKGG 221
+++ + + Q KGG
Sbjct: 265 CEIKVAQPKEVYRQQQQKGG 284
>gi|303272115|ref|XP_003055419.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463393|gb|EEH60671.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 291
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 17/196 (8%)
Query: 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS--DIQHEG 72
K I K+ + + +F+GN+ T+ + Q L+D G GVE + + + +
Sbjct: 79 KAIEDKKIRVSVKQTKHRVFIGNVDRMKTRAEVIQGLRDAGCGGVEKLEMPKNRNPAYPS 138
Query: 73 LSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVF 132
++GF F F A A K L + + G P V +A+P + PDP VK+V+
Sbjct: 139 QTKGFGFADFYNASCAERAMKILSESRLFLGRP---VTARWADP-KLPDPSTT--VKSVY 192
Query: 133 LDGVPPHWK-----ENQIRDQIKGYGDVIRIVLAR----NMSTAKRKDYGFIDFSTHEAA 183
+ +PP E +++ YGDV + + + + S + ++++ F+ +++ E+A
Sbjct: 193 VGNLPPSLVADEGGEEKLKALFGKYGDVETVFVYKPRPGDASASAKRNFAFVHYASRESA 252
Query: 184 VACINAINNKEFSDGN 199
+A A + +D
Sbjct: 253 LAAAEAGKRSDDADAT 268
>gi|443919574|gb|ELU39701.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 716
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 87/192 (45%), Gaps = 21/192 (10%)
Query: 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDA 88
+++T+FVG + + + Q+ + G + + ++ G SRGFA+V FS +A
Sbjct: 108 ESNTVFVGRLSWNVDNDWLAQEFQGCGTVVAARVQM---DRNSGKSRGFAYVEFSSPAEA 164
Query: 89 MAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV---------KTVFLDGVPPH 139
A + + + R V V ++P R+P+PE A V T+F+ + +
Sbjct: 165 QKAVEEMNGKQI----DGREVNVDISQP-RQPNPEKRAQVFGDSESQPSTTLFVGNLSWN 219
Query: 140 WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 199
E+ + +GDV + L + + K K +G+++F E A A+ K+ DG
Sbjct: 220 TTEDGLWTAFGEFGDVTHVRLPTDQESGKPKGFGYVEFGDQEGATKAYEAMKGKDL-DGR 278
Query: 200 SKVKLRARLSNP 211
+ LR S P
Sbjct: 279 T---LRLDYSQP 287
>gi|405963075|gb|EKC28679.1| ELAV-like protein 2 [Crassostrea gigas]
Length = 502
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 108/238 (45%), Gaps = 38/238 (15%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
S+ N L V + T + E K+ + G +++ +V D + S GF FV +
Sbjct: 187 SDPNTNLIVNYLPQTLSDEDFKELFEKIG--PLKSYKIVRD-KATNYSYGFGFVDYVNEE 243
Query: 87 DAMAAYKRL--QKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
DA A + QK D +T+KV++A R+ D E + +++ +P + E +
Sbjct: 244 DAERAIHEMNGQKMD------HKTIKVSYA---RKNDSE--SKGANIYIANIPRSFGEEE 292
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK----------- 193
+ + +G++I++ L R+ ST + K GF+ ++ A A + A+N K
Sbjct: 293 LGAHFRQFGEIIQVRLLRDKSTNESKGVGFVYYTKRSEAAAALEAMNGKTLLKGYPALSI 352
Query: 194 EFSDGNSK-------VKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSG 244
+F+D N++ ++++ L P P + GG G R S+ T R+ SG
Sbjct: 353 KFADINARKGRAPYQIQVQTNLRYPTPGSNPYGGGPHGPMR----STNTRMRFNPMSG 406
>gi|327284183|ref|XP_003226818.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
1-like [Anolis carolinensis]
Length = 386
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 17/178 (9%)
Query: 10 LIFPLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ 69
L+FP +I G E LF+G + T +++++ + +G + + ++ D Q
Sbjct: 18 LLFPSTEIRGH--DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQ 73
Query: 70 HEGLSRGFAFVMFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH 127
+ SRGF FV +SC VDA A R K D P+R V RE + AH
Sbjct: 74 TK-RSRGFGFVTYSCVEEVDAAMA-ARPHKVDGRVVEPKRAVS-------REDSVKPGAH 124
Query: 128 --VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
VK +F+ G+ +E +RD + YG + I + + + K++ + F+ F H+
Sbjct: 125 LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 182
>gi|71896731|ref|NP_001026314.1| heterogeneous nuclear ribonucleoprotein D0 [Gallus gallus]
gi|326918726|ref|XP_003205639.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like
[Meleagris gallopavo]
gi|53135954|emb|CAG32472.1| hypothetical protein RCJMB04_26e18 [Gallus gallus]
Length = 257
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 1 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 47
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+
Sbjct: 48 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGA 106
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 107 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 161
>gi|148230657|ref|NP_001081318.1| heterogeneous nuclear ribonucleoprotein A3 homolog 1 [Xenopus
laevis]
gi|1710625|sp|P51968.1|RO31_XENLA RecName: Full=Heterogeneous nuclear ribonucleoprotein A3 homolog 1;
AltName: Full=hnRNP A3(A)
gi|214745|gb|AAA49949.1| ribonucleoprotein [Xenopus laevis]
Length = 373
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 95/199 (47%), Gaps = 22/199 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDA-M 89
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA M
Sbjct: 29 LFIGGLSFETTDDSLREHFEQWGK--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDASM 85
Query: 90 AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRD 147
+A R K D P+R V RE AH VK +F+ G+ +E +RD
Sbjct: 86 SA--RPHKVDGRVVEPKRAVS-------REDSARPGAHLTVKKIFVGGIKEDTEEYHLRD 136
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS-KVKLRA 206
+ YG + I + + + K++ + F+ F H+ ++ I +++ N +++
Sbjct: 137 YSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDT----VDKIVVQKYHTINGHNCEVKK 192
Query: 207 RLSNPMPKTQAVKGGMSGG 225
LS +T + + G GG
Sbjct: 193 ALSKQEMQTASAQRGRGGG 211
>gi|341894622|gb|EGT50557.1| CBN-HRP-1 protein [Caenorhabditis brenneri]
Length = 343
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG + + T E +++ +G + +I ++ D + SRGF FV F+ + AA
Sbjct: 25 IFVGGLTSNTTDELMREFYSQFG--EITDIIVMRDPTTK-RSRGFGFVTFTGKTEVDAAM 81
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K Q+P V+ G +TV A P + + E K +++ GV E+ + +
Sbjct: 82 K--QRPHVIDG---KTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFSK 136
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
YG+V++ + + +T K + +GF+ F H++ C+
Sbjct: 137 YGNVVKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 172
>gi|363733071|ref|XP_420372.3| PREDICTED: probable RNA-binding protein 46 [Gallus gallus]
Length = 475
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 96/206 (46%), Gaps = 13/206 (6%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I KE I +++K EGV ++ + D +RGFA
Sbjct: 129 GRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRI-TEGVVDVIVCPDATDRTKNRGFA 187
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
FV + H A A +RL F R V+V +A P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRRLLPG--TFQLWGRAVQVDWACPEKEVDAETMRRVKVLYVRNLMI 245
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198
E+ I+ + + R+V K +DY F+ F E AVA ++ +N K DG
Sbjct: 246 STTEDTIKAEFNKFKP--RVV----ERVKKLRDYAFVHFYNREDAVAAMSIMNGKCI-DG 298
Query: 199 NSKVKLRARLSNPMPKTQAVKGGMSG 224
S + L+ P+ K K ++G
Sbjct: 299 AS---IEVTLAKPVNKESTWKQHLNG 321
>gi|326918248|ref|XP_003205402.1| PREDICTED: probable RNA-binding protein 46-like, partial [Meleagris
gallopavo]
Length = 467
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 96/206 (46%), Gaps = 13/206 (6%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I KE I +++K EGV ++ + D +RGFA
Sbjct: 129 GRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRI-TEGVVDVIVCPDATDRTKNRGFA 187
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
FV + H A A +RL F R V+V +A P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRRLLPG--TFQLWGRAVQVDWACPEKEVDAETMRRVKVLYVRNLMI 245
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198
E+ I+ + + R+V K +DY F+ F E AVA ++ +N K DG
Sbjct: 246 STTEDTIKAEFNKFKP--RVV----ERVKKLRDYAFVHFYNREDAVAAMSVMNGKCI-DG 298
Query: 199 NSKVKLRARLSNPMPKTQAVKGGMSG 224
S + L+ P+ K K ++G
Sbjct: 299 AS---IEVTLAKPVNKESTWKQHLNG 321
>gi|7020334|dbj|BAA91086.1| unnamed protein product [Homo sapiens]
Length = 431
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 107/266 (40%), Gaps = 48/266 (18%)
Query: 56 VEGVENINLVSDIQHEGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFA 114
EGV ++ + + +RGFAFV + H AMA K L ++GH + V +A
Sbjct: 5 TEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWA 61
Query: 115 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDY 172
EP E D + M+ VK +++ + E I + G V R+ K +DY
Sbjct: 62 EPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDY 113
Query: 173 GFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGS 232
F+ FS E AV + A+N K DG+ + L+ P+ K
Sbjct: 114 AFVHFSNREDAVEAMKALNGKVL-DGSP---IEVTLAKPVDK------------------ 151
Query: 233 SRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGR 289
++ RY RG+G R +G Y G+ + ++ +G + Y
Sbjct: 152 -DSYVRYTRGTG------GRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQTYAAIPSL 204
Query: 290 QF-IGRGGRSFRGGYNAPS-RAAAGA 313
F +G S R APS R AAG
Sbjct: 205 HFPATKGHLSNRAIIRAPSVRGAAGV 230
>gi|213623691|gb|AAI70089.1| LOC397919 protein [Xenopus laevis]
Length = 704
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 90/191 (47%), Gaps = 21/191 (10%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
Q G R G P+ D+ L V N+ + T+++++ E E + Q++G ++
Sbjct: 452 QNSGGRRG--PAGDSKVLVVNNLSYSATEDSLR--------EVFEKATSIRIPQNQGRAK 501
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFL 133
GFAFV FS DA A +V R++++ F++ V KT+F+
Sbjct: 502 GFAFVEFSSMEDAKEAMDSCNNTEV----EGRSIRLEFSQGGGPQGGGRGGSVQSKTLFV 557
Query: 134 DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
G+ E +++ G + RIV R+ T K +GF+DFS+ E A A A+ +
Sbjct: 558 RGLSEDTTEETLKEAFDGSINA-RIVTDRD--TGASKGFGFVDFSSSEDAKAAREAMEDG 614
Query: 194 EFSDGNSKVKL 204
E DGN KV L
Sbjct: 615 EI-DGN-KVTL 623
>gi|148227150|ref|NP_001088992.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Xenopus laevis]
gi|52082714|gb|AAU25946.1| p37 AUF1 [Xenopus laevis]
Length = 295
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 18/186 (9%)
Query: 24 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMF 82
+ ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 31 SKTEEDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 86
Query: 83 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKE 142
K + D V E + +P R + VK +F+ G+ P E
Sbjct: 87 ----------KESEGVDKVMEQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPE 136
Query: 143 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202
++IR+ +G+V I L + T KR+ + FI F + N + K + G SK
Sbjct: 137 DKIREYFGTFGEVEAIELPMDNKTNKRRGFCFITFKEEDPVK---NIMEKKYHNVGLSKC 193
Query: 203 KLRARL 208
+++ L
Sbjct: 194 EIKVAL 199
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 14/167 (8%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 155 VFIKNLDVAIDNKALHDTFAAFG-----NILSCKVAQDENGNSKGYGFVHYETDEAAAQA 209
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDP---EIMAHVKTVFLDGVPPHWKENQIRDQ 148
K + +++ E+ V V + P ++ E+ A+ +++ + + + RD
Sbjct: 210 IKHVN--NMLLN--EKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDL 265
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
YGDV LAR+ S K + +GF++F+THE A + +N KEF
Sbjct: 266 FAKYGDVTSSSLARD-SEGKSRGFGFVNFTTHECAAKAVEELNGKEF 311
>gi|171451950|dbj|BAG15903.1| musashi [Dugesia japonica]
Length = 473
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 7/160 (4%)
Query: 24 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 83
+A S + LFVG + T T EA++ +G ++ ++ DI H+ SRGF FV F+
Sbjct: 36 SASSNEPCKLFVGGLNPTTTSEALQSYFSQFG--EIKEFMVMRDIVHKR-SRGFGFVTFT 92
Query: 84 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
D K L++ + + + K+A + + +P+ +I A K +F+ G+
Sbjct: 93 ---DYNGVIKVLKQENHILDSKKIDPKLAVPKSICQPE-KISARTKKIFIGGIATSSTVE 148
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+IR YG+V L + +T + + +GF+ F + A
Sbjct: 149 EIRQYFNRYGEVENCELMMDKATNRHRGFGFVTFLDEDVA 188
>gi|358372661|dbj|GAA89263.1| C6 transcription factor [Aspergillus kawachii IFO 4308]
Length = 1068
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 84/168 (50%), Gaps = 8/168 (4%)
Query: 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH 85
P +T+F+GNI T+E +K+ ++ YGV VE + LV D + G+S+G+ +V F
Sbjct: 878 PPTPKETVFIGNIFYDVTREDLKKAMEKYGV--VEKVVLVLD--NRGISKGYGYVQF--- 930
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
D++ A +R + R V V FA+ ++ A +T+++ +P + +
Sbjct: 931 -DSIDAAQRAVDALNLRLFEGRRVTVQFAQNNVYHRRQLNAPTRTLYIGNLPFEMTDRDL 989
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
+ K +V+ I +A + T + + + +F + +A A + + NK
Sbjct: 990 NELFKDVQNVVDIRVAVDRRTGQARGFAHAEFVSTSSAKAAMAVLENK 1037
>gi|449492608|ref|XP_002192177.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1
[Taeniopygia guttata]
Length = 309
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 90/199 (45%), Gaps = 19/199 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 19 LFIGGLSFETTEESLRSYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 75
Query: 93 KRLQKPDVVFG---HPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRD 147
+P + G P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 76 --AARPHTIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRD 126
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 207
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 127 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKAL 184
Query: 208 LSNPMPKTQAVKGGMSGGF 226
M + Q + G G F
Sbjct: 185 SRQEMQEVQNSRSGRGGNF 203
>gi|444723247|gb|ELW63906.1| Heterogeneous nuclear ribonucleoprotein D0, partial [Tupaia
chinensis]
Length = 296
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 52 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 98
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 99 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 157
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 158 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 212
>gi|395816795|ref|XP_003781875.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Otolemur
garnettii]
Length = 350
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 23/200 (11%)
Query: 27 SEDNDT---LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF- 82
S+D T +F+G + +K + + L +G E V+ I + G SRGF FV+F
Sbjct: 75 SKDQQTDGKMFIGGLSWDTSKRDLTEYLSRFG-EVVDCIIKTDPV--SGRSRGFGFVLFK 131
Query: 83 -SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 141
+ VD + K K D P+R A+PL+E P K VF+ G+ P
Sbjct: 132 DAASVDKVLELKE-HKLDGKLIDPQR------AKPLKEKAPP-----KKVFVGGLSPDTS 179
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201
+ QI+D +G++ I L R+ T +R+ + F+ ++ E + + + G+ K
Sbjct: 180 KEQIKDYFGAFGEIENIELPRDRKTNERRGFCFVTYTEGEPVKKLLES---RYHHIGSGK 236
Query: 202 VKLRARLSNPMPKTQAVKGG 221
+++ + + Q KGG
Sbjct: 237 CEIKVAQPKEVYRQQQQKGG 256
>gi|558629|emb|CAA57551.1| chloroplast RNA binding protein [Phaseolus vulgaris]
Length = 287
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 7/172 (4%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
L+ GN+ + + ++DYG E I ++ D + G SRGFAFV SC D A
Sbjct: 115 LYFGNLPYSVDSAKLAGLIQDYG--SAELIEVLYD-RDTGKSRGFAFVTMSCIEDCNAVI 171
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+ L + + RT++V F+ + +P +F+ + + + Y
Sbjct: 172 ENLDGKE----YLGRTLRVNFSNKPKAKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEY 227
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204
G V+ + + T + + YGF+ FST E A + A+N+ E +V L
Sbjct: 228 GTVVGARVLYDGETGRSRGYGFVCFSTKEEMEAALGALNDVELEGRAMRVSL 279
>gi|297796435|ref|XP_002866102.1| hypothetical protein ARALYDRAFT_495641 [Arabidopsis lyrata subsp.
lyrata]
gi|297311937|gb|EFH42361.1| hypothetical protein ARALYDRAFT_495641 [Arabidopsis lyrata subsp.
lyrata]
Length = 449
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 114/251 (45%), Gaps = 45/251 (17%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 90
LF+G I +E ++ +YG VE V ++ D + G +RGF F++F+ D
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAV----IMRD-RATGRARGFGFIVFA---DPCV 59
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEP-------LREPDP-EIMAHV--------KTVFLD 134
+ + + + ++ G RTV+ A P R P ++M+ V K +F+
Sbjct: 60 SERVIMEKHIIDG---RTVEAKKAVPRDDQQVLKRHASPIQLMSPVHGGGGGRTKKIFVG 116
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
G+P E + ++ +G + +V+ + +T + + +GFI F + +A ++ + +K
Sbjct: 117 GLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDA----VDRVLHKT 172
Query: 195 FSDGNSK-VKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA 253
F + N K V+++ + + + GG G GS+R A +FN
Sbjct: 173 FHELNGKLVEVKRAVPKETSPVSNNRSPLPGGLNYGGGSNRI---------SANSYFN-- 221
Query: 254 NFQRGRGFYQH 264
NF G GFY +
Sbjct: 222 NFAPGPGFYNN 232
>gi|449458854|ref|XP_004147161.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Cucumis
sativus]
Length = 462
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 26/200 (13%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
D LF+G I +++ +K +YG E + + + I RGF FV+FS D
Sbjct: 3 SDQGKLFIGGISWETSEDKLKDYFSNYG-EVMHTVVMRDKITSR--PRGFGFVVFS---D 56
Query: 88 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP-------------DPEIMAHVKTVFLD 134
+ LQ + G + E + P K +F+
Sbjct: 57 PSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNGRNSGGSGGGNMRTKKIFVG 116
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
G+PP E ++ + YG V +V+ + +T + + +GFI F T EA ++ + +K
Sbjct: 117 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEA----VDRVLHKT 172
Query: 195 FSDGNSKVKLRARLSNPMPK 214
F D N K + + +PK
Sbjct: 173 FHDLNGK---QVEVKRALPK 189
>gi|195054712|ref|XP_001994267.1| GH23661 [Drosophila grimshawi]
gi|193896137|gb|EDV95003.1| GH23661 [Drosophila grimshawi]
Length = 479
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 96/198 (48%), Gaps = 14/198 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E +K +G V ++ ++ D + SRGF F+ ++ AM
Sbjct: 39 LFIGGLAPYTTEEGLKVFYSQWG--KVVDVVVMRDAATK-RSRGFGFITYTK--SAMVDT 93
Query: 93 KRLQKPDVVFGHPERTV--KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
+ +P ++ G +TV K A P RE E VK +F+ G+ + E+ +R+
Sbjct: 94 AQENRPHIIDG---KTVEAKRALPRPERETR-ETNISVKKLFVGGLKDNHDEDCLREYFL 149
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 210
+G+V+ + L + +T KR+ + FI+F ++ A AI ++ S V ++ + N
Sbjct: 150 QFGNVVSVKLLTDKTTGKRRGFAFIEFDDYD---AVDKAILQRQHSIKYVLVDVKKSIYN 206
Query: 211 PMPKTQAVKGGMSGGFRI 228
K + +G + G ++
Sbjct: 207 LEKKDRMAQGAAANGNKM 224
>gi|148226518|ref|NP_001081557.1| nucleolin [Xenopus laevis]
gi|295899|emb|CAA51460.1| nucleolin [Xenopus laevis]
Length = 705
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 90/191 (47%), Gaps = 21/191 (10%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
Q G R G P+ D+ L V N+ + T+++++ E E + Q++G ++
Sbjct: 453 QNSGGRRG--PAGDSKVLVVNNLSYSATEDSLR--------EVFEKATSIRIPQNQGRAK 502
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFL 133
GFAFV FS DA A +V R++++ F++ V KT+F+
Sbjct: 503 GFAFVEFSSMEDAKEAMDSCNNTEV----EGRSIRLEFSQGGGPQGGGRGGSVQSKTLFV 558
Query: 134 DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
G+ E +++ G + RIV R+ T K +GF+DFS+ E A A A+ +
Sbjct: 559 RGLSEDTTEETLKEAFDGSINA-RIVTDRD--TGASKGFGFVDFSSAEDAKAAREAMEDG 615
Query: 194 EFSDGNSKVKL 204
E DGN KV L
Sbjct: 616 EI-DGN-KVTL 624
>gi|213625123|gb|AAI69881.1| Unknown (protein for MGC:196608) [Xenopus laevis]
Length = 348
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 17/156 (10%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDA-M 89
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA M
Sbjct: 29 LFIGGLSFETTDDSLREHFEQWG--KLTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDASM 85
Query: 90 AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRD 147
+A R K D P+R V RE AH VK +F+ G+ +E +RD
Sbjct: 86 SA--RPHKVDGRVVEPKRAVS-------REDSARPGAHLTVKKIFVGGIKEDTEEYHLRD 136
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+GYG + I + + + K++ + F+ F H+
Sbjct: 137 YFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 172
>gi|327272896|ref|XP_003221220.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Anolis
carolinensis]
Length = 311
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 21/166 (12%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
+D+ +F+G + +K+ + + L +G V + + +D G SRGF FV+F D
Sbjct: 37 QDDGKMFIGGLSWDTSKKDLTEYLSRFGE--VVDCTIKTD-PVTGRSRGFGFVLFK---D 90
Query: 88 AMAAYKRLQ----KPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
A + K L+ K D P+R + EP K VF+ G+ P E
Sbjct: 91 AASVEKVLELKEHKLDGKLIDPKRAKALKGKEP-----------PKKVFVGGLSPDTSEE 139
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 189
QI++ G+G++ I L + T +R+ + FI +S E + +
Sbjct: 140 QIKEYFGGFGEIENIELPMDTKTNERRGFCFITYSDEEPVKKLLES 185
>gi|301611921|ref|XP_002935471.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 579
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 5/131 (3%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I +++ +GV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKRREEILVEMRKV-TDGVLDVIVYPSAADKSKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQ 148
E I +
Sbjct: 240 LTTAEETIEKE 250
>gi|213625217|gb|AAI70091.1| LOC397919 protein [Xenopus laevis]
Length = 704
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 90/191 (47%), Gaps = 21/191 (10%)
Query: 16 QICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75
Q G R G P+ D+ L V N+ + T+++++ E E + Q++G ++
Sbjct: 452 QNSGGRRG--PAGDSKVLVVNNLSYSATEDSLR--------EVFEKATSIRIPQNQGRAK 501
Query: 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFL 133
GFAFV FS DA A +V R++++ F++ V KT+F+
Sbjct: 502 GFAFVEFSSMEDAKEAMDSCNNTEV----EGRSIRLEFSQGGGPQGGGRGGSVQSKTLFV 557
Query: 134 DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
G+ E +++ G + RIV R+ T K +GF+DFS+ E A A A+ +
Sbjct: 558 RGLSEDTTEETLKEAFDGSINA-RIVTDRD--TGASKGFGFVDFSSAEDAKAAREAMEDG 614
Query: 194 EFSDGNSKVKL 204
E DGN KV L
Sbjct: 615 EI-DGN-KVTL 623
>gi|309266922|ref|XP_003086896.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC237030
[Mus musculus]
gi|309271524|ref|XP_003085337.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC237030
[Mus musculus]
Length = 537
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 17/157 (10%)
Query: 23 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVM 81
T +D +F+G + K+ + + L +G E I+ + I + GLSRGF FV+
Sbjct: 25 ATKNQQDASKMFIGGLSQEVNKQVVLEYLSKFG----EIIDFIIKIDPNTGLSRGFGFVL 80
Query: 82 FSCHVDAMAAYKRLQ-KPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHW 140
F D+ K L+ K V G + ++V A+ L P +K VF+ G+ P
Sbjct: 81 FK---DSATVEKVLRVKEHKVDG---KKIEVKRAKALESQFP-----IKKVFVGGLNPRM 129
Query: 141 KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 177
E +IR +G + I L T +R+ +GFI +
Sbjct: 130 SEEKIRAYFGTFGQIEAIELPLCSDTQERRAFGFIKY 166
>gi|157118269|ref|XP_001653144.1| heterogeneous nuclear ribonucleoprotein 27c [Aedes aegypti]
gi|94468876|gb|ABF18287.1| RNA-binding protein musashi/mRNA cleavage and polyadenylation
factor I complex subunit HRP1 [Aedes aegypti]
gi|108875770|gb|EAT39995.1| AAEL008257-PA [Aedes aegypti]
Length = 398
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 10/151 (6%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
LFVG + T+E +++ YG E I+ V +E G SRGF FV F+ + A
Sbjct: 20 LFVGGLSWETTQENLQRYFGRYG----EVIDCVVMKNNETGRSRGFGFVTFADPDNVDRA 75
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
+ P + G RT+ P P+ VFL G+PP+ E +R
Sbjct: 76 LEN--GPHTLDG---RTIDPKPCNPRSLHKPKRTGGYPKVFLGGLPPNITETDLRSFFSR 130
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEA 182
YG+V+ +V+ + K + +GF+ F A
Sbjct: 131 YGNVMEVVIMYDQEKKKSRGFGFLSFENEPA 161
>gi|281349549|gb|EFB25133.1| hypothetical protein PANDA_000670 [Ailuropoda melanoleuca]
Length = 323
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 67
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 68 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 178
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 179 QEMQEVQSSRSGRGGNF 195
>gi|224129580|ref|XP_002320621.1| predicted protein [Populus trichocarpa]
gi|222861394|gb|EEE98936.1| predicted protein [Populus trichocarpa]
Length = 183
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 19/188 (10%)
Query: 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDA 88
D LF+G I T+E ++ YG V + ++ D + G RGF FV+FS D
Sbjct: 1 DEGKLFIGGIAWDTTEETLRDHFNLYG--EVSQVVIMRD-KTTGRPRGFGFVVFS---DP 54
Query: 89 MAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT--VFLDGVPPHWKENQIR 146
LQ + G T+ + + + +T +F+ G+PP E+ R
Sbjct: 55 SLLDPVLQDKHTIDGRSVMTLSPFSSNSSNF----LFCNFRTNKIFVGGLPPTLMEDAFR 110
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206
+ YG V +VL + T + + +GFI F T +A ++ + K F + N K+
Sbjct: 111 QYFQSYGHVCDVVLMYDQQTQRPRGFGFITFDTEDA----VDNVLQKTFHELNGKL---V 163
Query: 207 RLSNPMPK 214
+ +PK
Sbjct: 164 EVKRALPK 171
>gi|195109789|ref|XP_001999464.1| GI24524 [Drosophila mojavensis]
gi|193916058|gb|EDW14925.1| GI24524 [Drosophila mojavensis]
Length = 462
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 11/157 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E++K +G V ++ ++ D + SRGF F+ ++ AM
Sbjct: 39 LFIGGLAPYTTEESLKVFYSQWG--KVVDVVVMRDAATK-RSRGFGFITYTK--SAMVDT 93
Query: 93 KRLQKPDVVFGHPERTV--KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
+ +P ++ G +TV K A P RE E VK +F+ G+ + E+ +R+
Sbjct: 94 AQENRPHIIDG---KTVEAKRALPRPERETR-ETNISVKKLFVGGLKDNHDEDCLREYFL 149
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
+G+V+ + L + +T KR+ + FI+F ++A I
Sbjct: 150 QFGNVVSVKLLTDKTTGKRRGFAFIEFDDYDAVDKAI 186
>gi|301611919|ref|XP_002935470.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 587
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 5/131 (3%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I +++ +GV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKRREEILVEMRKV-TDGVLDVIVYPSAADKSKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQ 148
E I +
Sbjct: 240 LTTAEETIEKE 250
>gi|195392302|ref|XP_002054798.1| GJ22593 [Drosophila virilis]
gi|194152884|gb|EDW68318.1| GJ22593 [Drosophila virilis]
Length = 474
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 96/198 (48%), Gaps = 14/198 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E +K +G V ++ ++ D + SRGF F+ ++ AM
Sbjct: 37 LFIGGLAPYTTEEGLKVFYSQWG--KVVDVVVMRDAATK-RSRGFGFITYTK--SAMVDT 91
Query: 93 KRLQKPDVVFGHPERTV--KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
+ +P ++ G +TV K A P RE E VK +F+ G+ + E+ +R+
Sbjct: 92 AQENRPHIIDG---KTVEAKRALPRPERETR-ETNISVKKLFVGGLKDNHDEDCLREYFL 147
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 210
+G+V+ + L + +T KR+ + FI+F ++ A AI ++ S V ++ + N
Sbjct: 148 QFGNVVSVKLLTDKTTGKRRGFAFIEFDDYD---AVDKAILQRQHSIKYVLVDVKKSIYN 204
Query: 211 PMPKTQAVKGGMSGGFRI 228
K + +G + G ++
Sbjct: 205 LEKKDRMAQGATANGNKM 222
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 19/170 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 144 VFIKNLDTAIDNKALHDTFAAFG-----NILSCKVAQDEFGNSKGYGFVHYETAEAATNA 198
Query: 92 YKR-----LQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQI 145
K L + V GH A+ R+ E+ A+ V++ + P +
Sbjct: 199 IKHVNGMLLNEKKVFVGH-------HIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEEF 251
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R+ + YG++ L+R+ T K + +GF++F H++A A + +N+KE+
Sbjct: 252 RELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEY 301
>gi|156101397|ref|XP_001616392.1| poly(A)-binding protein [Plasmodium vivax Sal-1]
gi|148805266|gb|EDL46665.1| poly(A)-binding protein, putative [Plasmodium vivax]
Length = 392
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 88/186 (47%), Gaps = 12/186 (6%)
Query: 24 TAPSEDND--TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM 81
T P+ +N TLFV + W + + K K +G +E+ + +++ S+G+ FV+
Sbjct: 109 TQPNSENKKTTLFVFYLPPHWNDQDLFDKFKTFG--NLESATVAK--KNDKTSKGYGFVV 164
Query: 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 141
++ A A + K +V G + +KV E + + T+F+ +P W
Sbjct: 165 YTDPHSAAMAISNMNKVEVYTG---KRLKVLLKSSSNENSKKKIKPGCTIFVFYLPNDWS 221
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201
+ ++ YG+++ + R + K + YGFI+F ++A+ + +N F+ GN
Sbjct: 222 DKDLKRHFSHYGNILGATIKRE-TNGKSRGYGFINFENQQSAINAVAGMNG--FNAGNKY 278
Query: 202 VKLRAR 207
+K+ +
Sbjct: 279 LKVSIK 284
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 90/230 (39%), Gaps = 26/230 (11%)
Query: 31 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF----SCHV 86
+++FV N + W + IK+ +G + N+ + DI +A++ F +C
Sbjct: 18 NSIFVYNFPSEWMENDIKKNFMIFGT--INNVIIDKDINM------YAYIQFHDGEACQ- 68
Query: 87 DAMAAYKRLQKPDVVFGHPERTV-------KVAFAEPLREPDPEIMAHVKTVFLDGVPPH 139
AM + V R V E ++ P T+F+ +PPH
Sbjct: 69 KAMEVMNGKEVSGKVLKVTARKVVEECMDMNATKIEAPQKTQPNSENKKTTLFVFYLPPH 128
Query: 140 WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 199
W + + D+ K +G++ +A+ + K YGF+ ++ +A I+ +N E G
Sbjct: 129 WNDQDLFDKFKTFGNLESATVAKK-NDKTSKGYGFVVYTDPHSAAMAISNMNKVEVYTGK 187
Query: 200 SKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSS-----RTFSRYGRGSG 244
L SN K + G F + + S R FS YG G
Sbjct: 188 RLKVLLKSSSNENSKKKIKPGCTIFVFYLPNDWSDKDLKRHFSHYGNILG 237
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 22/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 154 VFIKNLDVAIDNKALHDTFAAFG-----NILSCKVAQDEHGNSKGYGFVHYETDEAASQA 208
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L + V GH P++ + F E + A+ +++ + +++
Sbjct: 209 IKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE--------MKANFTNIYVKNIANEVTDDE 260
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
RD +GDV LAR+ K + +GF++F+THEAA ++ +N K+F
Sbjct: 261 FRDLFTAFGDVTSSSLARDQE-GKSRGFGFVNFTTHEAAAKAVDDLNGKDF 310
>gi|345323589|ref|XP_003430726.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
isoform 3 [Ornithorhynchus anatinus]
Length = 302
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 67
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 68 SARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 178
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 179 QEMQEVQSSRSGRGGNF 195
>gi|256081434|ref|XP_002576975.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|350645374|emb|CCD59903.1| heterogeneous nuclear ribonucleoprotein,putative [Schistosoma
mansoni]
Length = 380
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 17/162 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDY-GVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
+D+ LFVG + +W E + LK+Y G ++ + G SRGF FV
Sbjct: 48 DDSRKLFVGGL--SW--ETNENDLKEYFSRWGKVTQCIIKLDRFTGNSRGFGFVTLESE- 102
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
D ++ K L P+ + + + A+P REP +K +F+ G+ P E+QIR
Sbjct: 103 DCVS--KVLSVPEHWLKN--KKIDPKKAKPSREP-------LKKIFVGGIDPEVTEDQIR 151
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188
+ +G V + L + KRK Y F+ FST AA I+
Sbjct: 152 EYFSSFGKVESLDLPYDTQKGKRKHYIFVSFSTEAAAKKAIS 193
>gi|47221330|emb|CAF97248.1| unnamed protein product [Tetraodon nigroviridis]
Length = 312
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 22/173 (12%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK T ED +FVG + +K+ +K +G I SD G SRGF
Sbjct: 44 GKIEATKGDEDTGKMFVGGLSWDTSKKDLKDYFTKFGDVSDCTIKFDSD---SGRSRGFG 100
Query: 79 FVMFSCHVDAMAAYKRLQKP----DVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 134
FV+F D + K LQ+ D P+R + + +EP VK +F+
Sbjct: 101 FVLFK---DPSSVEKVLQQKEHRLDGRLIDPKRAMAMK-----KEP-------VKKIFVG 145
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
G+ P E IR+ +G++ I L + + KR+ + FI + +A C+
Sbjct: 146 GLNPEATEETIREYFGAFGEIENIDLPLDPKSKKRRGFIFITYKEEASAKKCL 198
>gi|148688488|gb|EDL20435.1| mCG62132 [Mus musculus]
Length = 518
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 17/157 (10%)
Query: 23 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVM 81
T +D +F+G + K+ + + L +G E I+ + I + GLSRGF FV+
Sbjct: 25 ATKNQQDASKMFIGGLSQEVNKQVVLEYLSKFG----EIIDFIIKIDPNTGLSRGFGFVL 80
Query: 82 FSCHVDAMAAYKRLQ-KPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHW 140
F D+ K L+ K V G + ++V A+ L P +K VF+ G+ P
Sbjct: 81 FK---DSATVEKVLRVKEHKVDG---KKIEVKRAKALESQFP-----IKKVFVGGLNPRM 129
Query: 141 KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 177
E +IR +G + I L T +R+ +GFI +
Sbjct: 130 SEEKIRAYFGTFGQIEAIELPLCSDTQERRAFGFIKY 166
>gi|291408115|ref|XP_002720404.1| PREDICTED: mCG62132-like [Oryctolagus cuniculus]
Length = 498
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 16/189 (8%)
Query: 23 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVM 81
T +D++ LFVG + +KE + L +G E ++++ + + GLS+GF FV+
Sbjct: 31 ATKTQQDDNKLFVGGLPYNISKETLLNYLSQFG----EILDIMIKLNPDTGLSKGFGFVL 86
Query: 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 141
F D+ A K LQ + + +K A A + P K VF+ G+ PH
Sbjct: 87 FK---DSAAVEKVLQVKEHKLDGRKIDIKRARAMEPKFPR-------KKVFVGGLNPHTS 136
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201
E +IR+ +G++ I L T R+ + FI + T E V + G +
Sbjct: 137 EVKIREYFGNFGEIESIELPVCPRTKTRQAFCFITY-TSEIPVRKLLETRYHLVGSGRCE 195
Query: 202 VKLRARLSN 210
+K+ A N
Sbjct: 196 IKIAAVTEN 204
>gi|392352553|ref|XP_003751242.1| PREDICTED: probable RNA-binding protein 19 [Rattus norvegicus]
Length = 955
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 13/168 (7%)
Query: 32 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEG--LSRGFAFVMFSCHVDAM 89
TLF+ N+ T+E +K+ G V++ + G LS GF FV + A
Sbjct: 726 TLFIKNLNFNTTEETLKEVFSRVG--AVKSCTISKKKSKAGVLLSMGFGFVEYKKPEQAQ 783
Query: 90 AAYKRLQKPDVVFGH------PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
A KRLQ +V GH ER K A ++ P+ K + + +P +
Sbjct: 784 KALKRLQG-HIVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSK-ILVRNIPFQANQR 841
Query: 144 QIRDQIKGYGDVIRIVLARNMS-TAKRKDYGFIDFSTHEAAVACINAI 190
+IR+ +G++ + L + M+ T + +GF+DF T + A NA+
Sbjct: 842 EIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 889
>gi|347966814|ref|XP_321133.5| AGAP001930-PA [Anopheles gambiae str. PEST]
gi|347966816|ref|XP_003435970.1| AGAP001930-PB [Anopheles gambiae str. PEST]
gi|333469887|gb|EAA00972.5| AGAP001930-PA [Anopheles gambiae str. PEST]
gi|333469888|gb|EGK97443.1| AGAP001930-PB [Anopheles gambiae str. PEST]
Length = 412
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 13/154 (8%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
LFVG + + E +++ YG E I+ V +E G SRGF FV F+ D
Sbjct: 20 LFVGGLSWETSHENLQRYFSRYG----EVIDCVVMKNNETGRSRGFGFVTFA---DPENV 72
Query: 92 YKRLQK-PDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
+ L+ P + G RT+ P + P+ VFL G+PP+ E +R
Sbjct: 73 ERALENGPHTLDG---RTIDPKPCNPRSQHKPKRTGGYPKVFLGGLPPNITETDLRSFFC 129
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 184
YG V+ +V+ + K + +GF+ F +E+AV
Sbjct: 130 RYGTVMEVVIMYDQEKKKSRGFGFLSFE-NESAV 162
>gi|256081430|ref|XP_002576973.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|350645372|emb|CCD59901.1| heterogeneous nuclear ribonucleoprotein,putative [Schistosoma
mansoni]
Length = 381
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 17/162 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDY-GVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
+D+ LFVG + +W E + LK+Y G ++ + G SRGF FV
Sbjct: 48 DDSRKLFVGGL--SW--ETNENDLKEYFSRWGKVTQCIIKLDRFTGNSRGFGFVTLESE- 102
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
D ++ K L P+ + + + A+P REP +K +F+ G+ P E+QIR
Sbjct: 103 DCVS--KVLSVPEHWLKN--KKIDPKKAKPSREP-------LKKIFVGGIDPEVTEDQIR 151
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188
+ +G V + L + KRK Y F+ FST AA I+
Sbjct: 152 EYFSSFGKVESLDLPYDTQKGKRKHYIFVSFSTEAAAKKAIS 193
>gi|508270|gb|AAA64654.1| A+U-rich RNA-binding protein [Mus musculus]
Length = 269
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 20/190 (10%)
Query: 23 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVM 81
A + +F+G + +W + K+ LKDY + E ++ + G SRGF FV+
Sbjct: 58 AAAAQREEWKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 113
Query: 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 141
F K + D V E + +P R + VK +F+ G+ P
Sbjct: 114 F----------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTP 163
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNS 200
E +IR+ G+G+V I L + T KR+ + FI F E + I K++ + G S
Sbjct: 164 EEKIREYFGGFGEVESIELPMDKKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLS 219
Query: 201 KVKLRARLSN 210
K +++ +S
Sbjct: 220 KCEIKVAMSK 229
>gi|255085602|ref|XP_002505232.1| predicted protein [Micromonas sp. RCC299]
gi|226520501|gb|ACO66490.1| predicted protein [Micromonas sp. RCC299]
Length = 211
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 87/182 (47%), Gaps = 14/182 (7%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
++D L+VG++ +T E + + K +G V I+++ D + + +GFAFV+FS
Sbjct: 29 NDDAAKLYVGHLPSTMNAERMLEMFKPFG--RVLQIDVIPDRERQLSCKGFAFVLFSTPE 86
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG------VPPHW 140
+A+AA + VV G +++ V R P + A V V D +P H+
Sbjct: 87 EAIAA--KALNGHVVEG---KSIDVRLKAEPRAPREPVNAPVAPVNDDAKLYVAYMPDHY 141
Query: 141 KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 200
+ +++ ++ YG + + + T + + +GF + A+A I +N + DG +
Sbjct: 142 RAEELKMLLQPYGLPSDVRVITDRETGRSRGFGFAQMMDEQQAMAAIQGLNGQML-DGKT 200
Query: 201 KV 202
V
Sbjct: 201 LV 202
>gi|332017443|gb|EGI58166.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1-like protein
[Acromyrmex echinatior]
Length = 407
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 11/175 (6%)
Query: 9 ILIFPLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDI 68
+L P+ + G E LF+G + T +++K+ + +G + ++ ++ D
Sbjct: 26 MLAMPMFATVSQEDGKNEPEHVRKLFIGGLDYRTTDDSLKKHFEQWG--EIVDVVVMKDP 83
Query: 69 QHEGLSRGFAFVMFS-CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMA 126
+ + SRGF F+ +S H+ A R + D P+R V P +E PE A
Sbjct: 84 KTK-RSRGFGFITYSRAHMVDDAQNARPHRVDGRVVEPKRAV------PRQEIGRPEAGA 136
Query: 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 181
VK +F+ G+ +E +R + YG + I + + T K++ +GF++F ++
Sbjct: 137 TVKKLFVGGLKDDHEEEDLRQYFQSYGSINSISIVTDKETGKKRGFGFVEFDDYD 191
>gi|296083709|emb|CBI23698.3| unnamed protein product [Vitis vinifera]
Length = 388
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 93/209 (44%), Gaps = 33/209 (15%)
Query: 29 DNDTLFVGNICNTWTKEAIKQKLKDY-GVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
D LF+G I +W E + KLK+Y G G + +V + G RGF FV+F+ D
Sbjct: 4 DQGKLFIGGI--SW--ETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFA---D 56
Query: 88 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA-------------HVKT--VF 132
+ LQ+ ++ G RTV+ A E A +VKT +F
Sbjct: 57 PSILDRVLQEKHIIDG---RTVEAKRALSREEQQTSSRAGNFNSARNSGGGGNVKTKKIF 113
Query: 133 LDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 192
+ G+PP E R + +G V +V+ + ST + + +GF+ F T +A ++ +
Sbjct: 114 VGGLPPTLSEEGFRQYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTEDA----VDRVLY 169
Query: 193 KEFSDGNSKVKLRARLSNPMPKTQAVKGG 221
K F D N K + + +PK GG
Sbjct: 170 KTFHDLNGK---QVEVKRALPKDANPGGG 195
>gi|334349111|ref|XP_001368260.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Monodelphis domestica]
Length = 341
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 67
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 68 SARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 178
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 179 QEMQEVQSSRSGRGGNF 195
>gi|149634029|ref|XP_001510026.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
isoform 1 [Ornithorhynchus anatinus]
gi|345323587|ref|XP_003430725.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
isoform 2 [Ornithorhynchus anatinus]
Length = 344
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 67
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 68 SARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 178
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 179 QEMQEVQSSRSGRGGNF 195
>gi|356571134|ref|XP_003553735.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A2 homolog
2-like [Glycine max]
Length = 374
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 11/188 (5%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+F+G + T I Q +K +G G +++ + G RGF F+ ++ D
Sbjct: 46 IFIGGLARETT---IAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYA---DPSVVD 99
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA-HVKTVFLDGVPPHWKENQIRDQIKG 151
++ ++ G + V++ P K +F+ G+P E++ RD
Sbjct: 100 TVIEDTHIING---KQVEIKRTIPRGAAGSNSKDFRTKKIFVGGIPSTVTEDEFRDFFTR 156
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 211
YG+V + R+ ST + + +GFI + + EA ++ N EF+ ++K +A P
Sbjct: 157 YGEVKDHQIMRDHSTNRSRGFGFITYDSEEAVDDLLSVGNKIEFAGAQVEIK-KAEPKKP 215
Query: 212 MPKTQAVK 219
P + K
Sbjct: 216 NPPAPSSK 223
>gi|389584444|dbj|GAB67176.1| poly(A)-binding protein [Plasmodium cynomolgi strain B]
Length = 384
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 89/186 (47%), Gaps = 12/186 (6%)
Query: 24 TAPSEDND--TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM 81
T P+ +N TLFV + W + + K K +G +E+ + +++ S+G+ FV+
Sbjct: 101 TQPNGENKKTTLFVFYLPPHWNDQDLFDKFKTFG--NLESATVAK--KNDKTSKGYGFVV 156
Query: 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 141
++ A A + K +V G + +KV E + + + T+F+ +P W
Sbjct: 157 YTDPHSATMAISNMNKVEVYAG---KRLKVLLKSNSNENNKKKIKPGCTIFVFYLPNDWS 213
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201
+ ++ YG+++ + R + K + YGFI+F ++A+ + +N F+ GN
Sbjct: 214 DKDLKRHFSHYGNILGATIKRE-TNGKSRGYGFINFENQQSAINAVAGMNG--FNAGNKY 270
Query: 202 VKLRAR 207
+K+ +
Sbjct: 271 LKVSIK 276
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 92/229 (40%), Gaps = 24/229 (10%)
Query: 31 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 90
+++FV N + W + IK+ +G + N+ + DI +A++ F
Sbjct: 10 NSIFVYNFPSEWMENDIKKNFMIFGT--INNVIIDKDINI------YAYIQFHDGEACQK 61
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT----------VFLDGVPPHW 140
A + + +V + T + E + +I A KT +F+ +PPHW
Sbjct: 62 AMEVMNGKEVSGKVLKVTARKMVEECMDMNSTKIEAPQKTQPNGENKKTTLFVFYLPPHW 121
Query: 141 KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 200
+ + D+ K +G++ +A+ + K YGF+ ++ +A I+ +N E G
Sbjct: 122 NDQDLFDKFKTFGNLESATVAKK-NDKTSKGYGFVVYTDPHSATMAISNMNKVEVYAGKR 180
Query: 201 KVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSS-----RTFSRYGRGSG 244
L SN K + G F + + S R FS YG G
Sbjct: 181 LKVLLKSNSNENNKKKIKPGCTIFVFYLPNDWSDKDLKRHFSHYGNILG 229
>gi|344268345|ref|XP_003406021.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like
[Loxodonta africana]
Length = 348
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 15/159 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 97 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 152
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 153 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 205
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
+ YG + I + + + K++ + F+ F H+ +
Sbjct: 206 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 244
>gi|388494018|gb|AFK35075.1| unknown [Lotus japonicus]
Length = 249
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 104/252 (41%), Gaps = 32/252 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+F GN+ + +++ + YG VE +++ S GFAFV DA A
Sbjct: 4 VFCGNLDFDARQSDVERLFRRYG--KVERVDMKS---------GFAFVYMEDERDAEYAI 52
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEI--------MAHVKTVFLDGVPP-HWKEN 143
+RL + + FG R ++V + + R+ M KT+F+ P H +
Sbjct: 53 RRLDRTE--FGRKGRRIRVEWTKQERDSRRSADSRKPASNMKPSKTLFIINFDPVHTRTR 110
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203
+ YG + I + RN + FI + + E A + A N +F D V+
Sbjct: 111 DLERHFDPYGKISNIRIRRN--------FAFIQYESLEDATRALEATNLSKFMDRVITVE 162
Query: 204 LRARLSNPMPKTQA--VKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGF 261
R + Q+ +G +S R G G S + R GRGS GH N A+ RG
Sbjct: 163 YAIRDDDDRRDGQSPDRRGRVSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPASRPEPRGS 222
Query: 262 YQHGRNHSSRMG 273
++ R S + G
Sbjct: 223 PKYERAESPQNG 234
>gi|148682805|gb|EDL14752.1| mCG117968 [Mus musculus]
Length = 317
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 15/159 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + N ++ D + SRGF FV ++ VDA A
Sbjct: 13 LFIGGLSFETTDESLRSHFEQWGT--LTNCVVMRDPNTK-RSRGFGFVTYATVEEVDA-A 68
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+RTV RE AH VK +F+ G+ +E+ +RD
Sbjct: 69 MNARPHKVDGRVVEPKRTVS-------REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDY 121
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
+ YG + I + + + K++ + F+ F H++ +
Sbjct: 122 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 160
>gi|410058693|ref|XP_003951016.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 [Pan
troglodytes]
gi|119614240|gb|EAW93834.1| heterogeneous nuclear ribonucleoprotein A2/B1, isoform CRA_a [Homo
sapiens]
Length = 301
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 67
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 68 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 178
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 179 QEMQEVQSSRSGRGGNF 195
>gi|350633123|gb|EHA21489.1| hypothetical protein ASPNIDRAFT_125918 [Aspergillus niger ATCC
1015]
Length = 264
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 84/168 (50%), Gaps = 8/168 (4%)
Query: 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH 85
P +T+F+GN+ T+E +K+ ++ YGV VE + LV D + G+S+G+ +V F
Sbjct: 88 PPTPKETVFIGNVFYDVTREDLKKAMEKYGV--VEKVVLVLD--NRGISKGYGYVQF--- 140
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
D++ A +R + R V V FA+ ++ A +T+++ +P + +
Sbjct: 141 -DSIDAAQRAVDALNMRLFEGRRVTVQFAQNNVYHRRQLNAPTRTLYIGNLPFEMTDRDL 199
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
+ K +V+ I +A + T + + + +F + +A A + + NK
Sbjct: 200 NELFKDVQNVVDIRVAVDRRTGQARGFAHAEFVSTSSAKAAMAILENK 247
>gi|343961425|dbj|BAK62302.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Pan troglodytes]
Length = 301
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 67
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 68 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 178
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 179 QEMQEVQSSRSGRGGNF 195
>gi|294610680|ref|NP_083246.1| RNA binding motif 31, Y-linked [Mus musculus]
gi|377834528|ref|XP_003689488.1| PREDICTED: uncharacterized protein LOC100861987 [Mus musculus]
gi|377836568|ref|XP_003689057.1| PREDICTED: uncharacterized protein LOC100861987 [Mus musculus]
gi|12856118|dbj|BAB30571.1| unnamed protein product [Mus musculus]
gi|148686366|gb|EDL18313.1| mCG53108 [Mus musculus]
Length = 565
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 23 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVM 81
T +D +F+G + +K+ + + L +G E I+ + + GLSRGF FV+
Sbjct: 25 ATKNQQDASKMFIGGLSQEMSKQVLLEYLSKFG----EIIDFIIKTDPNTGLSRGFGFVL 80
Query: 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAF--AEPLREPDPEIMAHVKTVFLDGVPPH 139
F D+ K LQ D H K+ F A+ L P K +F+ G+ P
Sbjct: 81 FK---DSATVEKVLQVKD----HKVDGKKIEFKRAKALESQFPN-----KKIFVGGLNPR 128
Query: 140 WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 177
E +IR +G + I L T +R+ +GFI +
Sbjct: 129 LSEEKIRAYFGTFGQIEAIELPLCSDTRERRAFGFIKY 166
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 19/170 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 144 VFIKNLDTAIDNKALHDTFAAFG-----NILSCKVAQDEFGNSKGYGFVHYETAEAAQNA 198
Query: 92 YKR-----LQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQI 145
K L V GH A+ R+ E+ A+ V++ + + +
Sbjct: 199 IKHVNGMLLNDKKVFVGH-------HIAKKDRQSKFEEMKANFTNVYVKNIDQDTTDEEF 251
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R+ + +G++ LAR+ + K + +GF++F++HE+A A ++ +N K+F
Sbjct: 252 RELFEKFGEITSATLARDSESGKSRGFGFVNFTSHESAAAAVDNLNEKDF 301
>gi|219519440|gb|AAI45589.1| Heterogeneous nuclear ribonucleoprotein A2/B1 [Mus musculus]
Length = 341
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 91/199 (45%), Gaps = 19/199 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD---AM 89
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AM
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDGAM 67
Query: 90 AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRD 147
AA R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 68 AA--RPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRD 118
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 207
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 119 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKAL 176
Query: 208 LSNPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 177 SRQEMQEVQSSRSGRGGNF 195
>gi|32880197|ref|NP_872591.1| heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2 [Mus
musculus]
gi|26354140|dbj|BAC40700.1| unnamed protein product [Mus musculus]
gi|223461557|gb|AAI41254.1| Hnrnpa2b1 protein [Mus musculus]
Length = 301
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 67
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 68 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 178
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 179 QEMQEVQSSRSGRGGNF 195
>gi|47218115|emb|CAG09987.1| unnamed protein product [Tetraodon nigroviridis]
Length = 419
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 92/197 (46%), Gaps = 18/197 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ + + SRGF FV +S + A
Sbjct: 9 LFIGGLSFETTEESLRAHFEKWG--SLTDCVVMREPSCK-RSRGFGFVTYSSLREVDEAM 65
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQI 149
K R K D P+R V RE + AH VK +F+ G+ +E+QIRD
Sbjct: 66 KARPHKVDGRVVEPKRAVS-------REDSNKPGAHLSVKKIFVGGIKEDTEEDQIRDYF 118
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS-KVKLRARL 208
+ YG + + + ST K++ + F+ F H+ ++ I +++ NS ++R L
Sbjct: 119 EKYGKIECVDIMEERSTGKKRGFCFVTFDDHDT----VDKIVAQKYHTINSHNCEVRKAL 174
Query: 209 SNPMPKTQAVKGGMSGG 225
S + G SGG
Sbjct: 175 SKQEMNAISSNRGRSGG 191
>gi|4504447|ref|NP_002128.1| heterogeneous nuclear ribonucleoproteins A2/B1 isoform A2 [Homo
sapiens]
gi|114051756|ref|NP_001039440.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Bos taurus]
gi|73976082|ref|XP_863847.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 3
[Canis lupus familiaris]
gi|332242620|ref|XP_003270483.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Nomascus leucogenys]
gi|332864909|ref|XP_003318407.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Pan troglodytes]
gi|338724111|ref|XP_003364873.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Equus caballus]
gi|350595419|ref|XP_003484106.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Sus scrofa]
gi|390466619|ref|XP_003733620.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Callithrix jacchus]
gi|397472888|ref|XP_003807964.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Pan paniscus]
gi|402863875|ref|XP_003896219.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Papio anubis]
gi|403287969|ref|XP_003935191.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Saimiri boliviensis boliviensis]
gi|410952506|ref|XP_003982920.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Felis catus]
gi|426355697|ref|XP_004045246.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Gorilla gorilla gorilla]
gi|122145945|sp|Q2HJ60.1|ROA2_BOVIN RecName: Full=Heterogeneous nuclear ribonucleoproteins A2/B1;
Short=hnRNP A2/B1
gi|337449|gb|AAA36574.1| hnRNP A2 protein [Homo sapiens]
gi|500638|gb|AAB60650.1| hnRNP protein A2 [Homo sapiens]
gi|565644|dbj|BAA06032.1| hnRNP A2 protein [Homo sapiens]
gi|87578315|gb|AAI13299.1| Heterogeneous nuclear ribonucleoprotein A2/B1 [Bos taurus]
gi|119614241|gb|EAW93835.1| heterogeneous nuclear ribonucleoprotein A2/B1, isoform CRA_b [Homo
sapiens]
gi|119614242|gb|EAW93836.1| heterogeneous nuclear ribonucleoprotein A2/B1, isoform CRA_b [Homo
sapiens]
gi|149033380|gb|EDL88181.1| rCG52521, isoform CRA_a [Rattus norvegicus]
gi|149033381|gb|EDL88182.1| rCG52521, isoform CRA_a [Rattus norvegicus]
gi|296488431|tpg|DAA30544.1| TPA: heterogeneous nuclear ribonucleoproteins A2/B1 [Bos taurus]
gi|387542842|gb|AFJ72048.1| heterogeneous nuclear ribonucleoproteins A2/B1 isoform A2 [Macaca
mulatta]
gi|410225452|gb|JAA09945.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Pan troglodytes]
gi|410343561|gb|JAA40594.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Pan troglodytes]
gi|410343565|gb|JAA40596.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Pan troglodytes]
gi|410343567|gb|JAA40597.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Pan troglodytes]
gi|410343569|gb|JAA40598.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Pan troglodytes]
gi|456753293|gb|JAA74140.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Sus scrofa]
Length = 341
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 67
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 68 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 178
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 179 QEMQEVQSSRSGRGGNF 195
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 22/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 145 VFIKNLDVAIDNKALHDTFAAFG-----NILSCKVAQDENGSSKGYGFVHYETDEAAQQA 199
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L + V GH P++ + F E + A+ V++ + P +++
Sbjct: 200 IKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE--------MKANFTNVYVKNISPEVTDDE 251
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R+ + +GDV +AR K + +GF++F+THEAA + +NNK+
Sbjct: 252 FRELFERHGDVTSSSIAREQD-GKSRGFGFVNFTTHEAAAKAVEELNNKDL 301
>gi|224114443|ref|XP_002316761.1| predicted protein [Populus trichocarpa]
gi|222859826|gb|EEE97373.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
D LF+G I +E +K+ YG E VE + ++ D + G +RGF FV+F+ D
Sbjct: 3 SDLGKLFIGGISWDTDEERLKEYFSKYG-EVVEAV-IMRD-RATGRARGFGFVVFA---D 56
Query: 88 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH-------------VKTVFLD 134
A + + + V+ G RTV+ A P D I++ K +F+
Sbjct: 57 LTVAERVIMEKHVIDG---RTVEAKKAVP--RDDQHILSRSISNIHGSPGPGRTKKIFVG 111
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
G+ EN+ + + YG +I +V+ + +T + + +GFI + + EA ++ + +K
Sbjct: 112 GLASTVTENEFKKYFEQYGIIIDVVVMYDHNTQRPRGFGFITYDSEEA----VDRVLHKT 167
Query: 195 FSDGNSKV 202
F + N K+
Sbjct: 168 FHELNGKM 175
>gi|109134362|ref|NP_058086.2| heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1 [Mus
musculus]
gi|309267107|ref|XP_001473875.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
isoform 1 [Mus musculus]
gi|21071091|gb|AAK98601.2| heterogeneous nuclear ribonucleoprotein A2/B1 [Mus musculus]
gi|148666222|gb|EDK98638.1| mCG119114, isoform CRA_b [Mus musculus]
gi|148666223|gb|EDK98639.1| mCG119114, isoform CRA_b [Mus musculus]
Length = 341
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 67
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 68 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 178
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 179 QEMQEVQSSRSGRGGNF 195
>gi|3329498|gb|AAC26867.1| heterogenous nuclear ribonucleoprotein A2/B1 [Mus musculus]
Length = 341
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 67
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 68 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 178
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 179 QEMQEVQSSRSGRGGNF 195
>gi|392332679|ref|XP_003752658.1| PREDICTED: probable RNA-binding protein 19 [Rattus norvegicus]
Length = 846
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 13/168 (7%)
Query: 32 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEG--LSRGFAFVMFSCHVDAM 89
TLF+ N+ T+E +K+ G V++ + G LS GF FV + A
Sbjct: 617 TLFIKNLNFNTTEETLKEVFSRVG--AVKSCTISKKKSKAGVLLSMGFGFVEYKKPEQAQ 674
Query: 90 AAYKRLQKPDVVFGH------PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
A KRLQ +V GH ER K A ++ P+ K + + +P +
Sbjct: 675 KALKRLQG-HIVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSK-ILVRNIPFQANQR 732
Query: 144 QIRDQIKGYGDVIRIVLARNMS-TAKRKDYGFIDFSTHEAAVACINAI 190
+IR+ +G++ + L + M+ T + +GF+DF T + A NA+
Sbjct: 733 EIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 780
>gi|169623995|ref|XP_001805404.1| hypothetical protein SNOG_15247 [Phaeosphaeria nodorum SN15]
gi|111056352|gb|EAT77472.1| hypothetical protein SNOG_15247 [Phaeosphaeria nodorum SN15]
Length = 451
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 85/178 (47%), Gaps = 16/178 (8%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
SE LFVG++ ++ ++++ + +G + +++D + G S+GF +V F+
Sbjct: 194 SEGIKNLFVGSLSWNIDEDWLRREFEGFGE--ITGCRVITD-RESGRSKGFGYVEFASAA 250
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH---------VKTVFLDGVP 137
DA A + + ++ R + V F+ P +PD A+ T+FL +
Sbjct: 251 DAAKAKAEMHEYEL----DGRGLNVDFSTPREKPDQSARANKYGDKRSAPANTLFLGNLS 306
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
I++ + YG++ R+ L + T K +G++DF T E A A + A+N +E
Sbjct: 307 FDCSNEGIQEIFQEYGNITRVSLPTDRDTGSLKGFGYVDFGTVEEATAALEALNGQEV 364
>gi|395519835|ref|XP_003764047.1| PREDICTED: uncharacterized protein LOC100918877 [Sarcophilus
harrisii]
Length = 495
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 151 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 206
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 207 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 259
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 260 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 294
>gi|303321732|ref|XP_003070860.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240110557|gb|EER28715.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320040347|gb|EFW22280.1| hypothetical protein CPSG_00179 [Coccidioides posadasii str.
Silveira]
Length = 498
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 91/202 (45%), Gaps = 29/202 (14%)
Query: 13 PLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEG 72
P+ + K S ++ LFVGN+ +E ++ + + +G + + +V+D + G
Sbjct: 246 PVAKKVKKETADEASAESSNLFVGNLSWNVDEEWLRSEFESFGE--LSGVRIVTD-RDSG 302
Query: 73 LSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR-------------- 118
SRGF +V F+ DA A+K + ++ RT+ + FA +
Sbjct: 303 RSRGFGYVEFTNAEDASKAFKAKKDAEI----DGRTINLDFANARQNAGGARDRAQSRAK 358
Query: 119 ----EPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 174
+ PE T+F+ + + EN +++ +G ++ I L + + + K +G+
Sbjct: 359 SFGDQTSPE----SDTLFIGNISFNADENAVQETFSSHGSILGIRLPTDPESGRPKGFGY 414
Query: 175 IDFSTHEAAVACINAINNKEFS 196
+ FS+ + A + NA+ E +
Sbjct: 415 VQFSSVDEARSAFNALQGTELA 436
>gi|440899276|gb|ELR50605.1| Heterogeneous nuclear ribonucleoproteins A2/B1, partial [Bos
grunniens mutus]
Length = 339
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 9 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 65
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 66 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 118
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 119 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 176
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 177 QEMQEVQSSRSGRGGNF 193
>gi|417409283|gb|JAA51156.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 279
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 21/189 (11%)
Query: 23 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVM 81
A + +F+G + +W + K+ LKDY + E ++ + G SRGF FV+
Sbjct: 14 AAAAQREEWKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 69
Query: 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 141
F K + D V E + +P R + VK +F+ G+ P
Sbjct: 70 F----------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTP 119
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNS 200
E +IR+ G+G+V I L + T KR+ + FI F E + I K++ + G S
Sbjct: 120 EEKIREYFGGFGEVESIELPMD-KTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLS 174
Query: 201 KVKLRARLS 209
K +++ +S
Sbjct: 175 KCEIKVAMS 183
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 17 ICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDI 68
I GK C S+ + +L F+ N+ + + +G + + + +D
Sbjct: 113 IKGKACRIMWSQRDPSLRRNGSGNIFIKNLHPAIDNKTLHDTFSAFG--KILSCKIATD- 169
Query: 69 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP-EIMAH 127
G S+GF FV + A AA + + ++ E V A+ R+ E++A+
Sbjct: 170 -ENGNSKGFGFVHYEESESAKAAIENVN--GMLLNDHEVYVGPHLAKKDRQSKMRELIAN 226
Query: 128 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
V++ + +W E+++R+ +G + I L+++ S K + +GF++F HE AV +
Sbjct: 227 FTNVYVKNINLNWDEDKLRETFSPFGTISSIFLSKDES-GKSRGFGFVNFEKHEDAVKAV 285
Query: 188 NAINNKEF 195
+NNK+
Sbjct: 286 EELNNKDI 293
>gi|317036295|ref|XP_001398046.2| C6 transcription factor [Aspergillus niger CBS 513.88]
Length = 1095
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 84/168 (50%), Gaps = 8/168 (4%)
Query: 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH 85
P +T+F+GN+ T+E +K+ ++ YGV VE + LV D + G+S+G+ +V F
Sbjct: 905 PPTPKETVFIGNVFYDVTREDLKKAMEKYGV--VEKVVLVLD--NRGISKGYGYVQF--- 957
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
D++ A +R + R V V FA+ ++ A +T+++ +P + +
Sbjct: 958 -DSIDAAQRAVDALNMRLFEGRRVTVQFAQNNVYHRRQLNAPTRTLYIGNLPFEMTDRDL 1016
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
+ K +V+ I +A + T + + + +F + +A A + + NK
Sbjct: 1017 NELFKDVQNVVDIRVAVDRRTGQARGFAHAEFVSTSSAKAAMAILENK 1064
>gi|417409751|gb|JAA51367.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 328
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 38 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 94
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 95 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 147
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 148 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 205
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 206 QEMQEVQSSRSGRGGNF 222
>gi|297729319|ref|NP_001177023.1| Os12g0577001 [Oryza sativa Japonica Group]
gi|255670424|dbj|BAH95751.1| Os12g0577001 [Oryza sativa Japonica Group]
Length = 90
Score = 55.5 bits (132), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 7 IYILIFPLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS 66
+++++ L Q+ GKR S D DTLF GN+C W E ++ ++ +E V +++L
Sbjct: 1 MHVMLLVLCQLQGKRLAVDLSLDQDTLFFGNLCKDWGIEEFEELIRK-ALEDVVSVDLAM 59
Query: 67 DIQHEG------LSRGFAFVMFSCH 85
H+ L+RGFAFV FS H
Sbjct: 60 ARNHDSSVGKRRLNRGFAFVRFSSH 84
>gi|380014848|ref|XP_003691428.1| PREDICTED: APOBEC1 complementation factor-like [Apis florea]
Length = 442
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 7/173 (4%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G R G S DN LF G + +KE Q+L +EG+ +I L + L+RGF
Sbjct: 123 GHRIGVVKSVDNCRLFFGGVPKNKSKEEFMQELTKI-LEGIIDIYLYPSAHDKTLNRGFI 181
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
FV F H A A ++L V+ E V A EP D EIM V +F+ +
Sbjct: 182 FVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEIMESVTALFVRNLSL 241
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191
+ ++RD + + + L K + F+ + + +AA ++ +
Sbjct: 242 DMSQQKVRDIFQKNTKIPILKL------KKINHFAFVHYESRQAAQTVMDIMT 288
>gi|350400746|ref|XP_003485944.1| PREDICTED: APOBEC1 complementation factor-like [Bombus impatiens]
Length = 463
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 1/129 (0%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G R G S DN LF G + KE Q+L +EG+ +I L + L+RGF
Sbjct: 114 GHRIGVVKSVDNCRLFFGGVPKNKCKEEFMQELNKI-LEGIIDIYLYPSAHDKTLNRGFI 172
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
FV F H A A ++L V+ E V A EP D E+M +V +F+ +
Sbjct: 173 FVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEVMENVTALFVRNLSL 232
Query: 139 HWKENQIRD 147
+ + +IRD
Sbjct: 233 NMPQQKIRD 241
>gi|324507426|gb|ADY43149.1| Heterogeneous nuclear ribonucleoprotein A1 [Ascaris suum]
Length = 331
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 11/196 (5%)
Query: 22 CGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM 81
G +E +F+G + +T T E +K+ +G E V+ + + SRGF FV
Sbjct: 12 AGALEAEQFRKMFIGGLTSTTTDETLKEFYSTWG-ELVDCVVMRDPTTKR--SRGFGFVT 68
Query: 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHW 140
+S + AA + +P V+ G +TV + A P + E K +++ GV
Sbjct: 69 YSKQSEVNAAME--NRPHVIDG---KTVDLKRAVPRDQSQRNEANVSSKRLYISGVREGH 123
Query: 141 KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 200
E D YG+VI+ + + +T K + + F+ F ++A C+ I N ++
Sbjct: 124 TEEMFTDYFSNYGNVIKCEVIVDKNTGKPRGFAFVTFDDYDAVDKCV-LIKNHMINNARC 182
Query: 201 KVKLRARLSNPMPKTQ 216
VK +A M + Q
Sbjct: 183 DVK-KALSKEEMNRAQ 197
>gi|291384352|ref|XP_002708768.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 1
[Oryctolagus cuniculus]
Length = 320
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 21/189 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G+ + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFEMTDESLRSHFEQWGM--LTDCVVMRDPNTK-RSRGFGFVTYATVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V LRE AH VK +F+ G+ +E+ +RD
Sbjct: 72 MNARPHKVDGRVVEPKRAV-------LREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDY 124
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKV 202
+ YG + I + + + K++ + F+ F H++ + + +N N E SK
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
Query: 203 KLRARLSNP 211
++ + S P
Sbjct: 185 EMASASSTP 193
>gi|417410136|gb|JAA51545.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 368
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 91/199 (45%), Gaps = 19/199 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 38 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 94
Query: 93 KRLQKPDVVFG---HPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRD 147
+P + G P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 95 --AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRD 145
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 207
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 146 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKAL 203
Query: 208 LSNPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 204 SRQEMQEVQSSRSGRGGNF 222
>gi|297606021|ref|NP_001057893.2| Os06g0566100 [Oryza sativa Japonica Group]
gi|53793272|dbj|BAD54495.1| putative Heterogeneous nuclear ribonucleoproteins A1 homolog [Oryza
sativa Japonica Group]
gi|53793315|dbj|BAD54536.1| putative Heterogeneous nuclear ribonucleoproteins A1 homolog [Oryza
sativa Japonica Group]
gi|215765227|dbj|BAG86924.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255677149|dbj|BAF19807.2| Os06g0566100 [Oryza sativa Japonica Group]
Length = 285
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 69 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV 128
+H + RGF FV FS D K LQ + G RTV+V P E +
Sbjct: 4 KHTKMPRGFGFVTFS---DPSVIDKVLQDEHTIDG---RTVEVKRTVPREEMSSKDGPKT 57
Query: 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188
+ +F+ G+PP E+++++ YG V+ + + T + + +GF+ F +A ++
Sbjct: 58 RKIFVGGIPPSLTEDKLKEHFSSYGKVVEHQIMLDHGTGRSRGFGFVTFENEDAVERVMS 117
>gi|71896753|ref|NP_001026156.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Gallus gallus]
gi|53127438|emb|CAG31102.1| hypothetical protein RCJMB04_2g17 [Gallus gallus]
Length = 349
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 90/199 (45%), Gaps = 19/199 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 19 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 75
Query: 93 KRLQKPDVVFG---HPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRD 147
+P + G P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 76 --AARPHTIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRD 126
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 207
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 127 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKAL 184
Query: 208 LSNPMPKTQAVKGGMSGGF 226
M + Q + G G F
Sbjct: 185 SRQEMQEVQNSRSGRGGNF 203
>gi|119195917|ref|XP_001248562.1| hypothetical protein CIMG_02333 [Coccidioides immitis RS]
gi|392862234|gb|EAS37139.2| hypothetical protein CIMG_02333 [Coccidioides immitis RS]
Length = 496
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 89/198 (44%), Gaps = 21/198 (10%)
Query: 13 PLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEG 72
P+ + K S ++ LFVGN+ +E ++ + + +G + + +V+D + G
Sbjct: 244 PVAKKVKKETADEASAESSNLFVGNLSWNVDEEWLRSEFESFGE--LSGVRIVTD-RDSG 300
Query: 73 LSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD----------- 121
SRGF +V F+ DA A+K + ++ RT+ + FA +
Sbjct: 301 RSRGFGYVEFTNAEDASKAFKAKKDAEI----DGRTINLDFANARQNAGGARDRAQSRAK 356
Query: 122 ---PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFS 178
+ T+F+ + + EN +++ +G ++ I L + + + K +G++ FS
Sbjct: 357 SFGDQTSPESDTLFIGNISFNADENAVQETFSSHGSILGIRLPTDPESGRPKGFGYVQFS 416
Query: 179 THEAAVACINAINNKEFS 196
+ + A + NA+ E +
Sbjct: 417 SVDEARSAFNALQGTELA 434
>gi|30696616|ref|NP_851195.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|334188426|ref|NP_001190546.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332009262|gb|AED96645.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332009265|gb|AED96648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 448
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 113/249 (45%), Gaps = 44/249 (17%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 90
LF+G I +E ++ +YG VE V ++ D + G +RGF F++F+ D
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAV----IMRD-RATGRARGFGFIVFA---DPCV 59
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEP-------LREPDP-EIMAHV-------KTVFLDG 135
+ + + ++ G RTV+ A P R P +M+ V K +F+ G
Sbjct: 60 SERVIMDKHIIDG---RTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGG 116
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P E + ++ +G + +V+ + +T + + +GFI F + +A ++ + +K F
Sbjct: 117 LPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDA----VDRVLHKTF 172
Query: 196 SDGNSK-VKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRAN 254
+ N K V+++ + + ++ ++ G G GS+R A +FN N
Sbjct: 173 HELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRM---------PANSYFN--N 221
Query: 255 FQRGRGFYQ 263
F G GFY
Sbjct: 222 FAPGPGFYN 230
>gi|348668207|gb|EGZ08031.1| hypothetical protein PHYSODRAFT_526739 [Phytophthora sojae]
Length = 158
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 9/145 (6%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T++ ++Q YG + + L+ D ++ G RGF FV F+ DA A
Sbjct: 20 LFIGGVSWETTEDTLRQHFGKYGA--LTDAALMKD-KYTGQPRGFGFVTFA---DATAID 73
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+ L + + G R+V+V A P + P + +K +F+ G+ P E R + +
Sbjct: 74 RVLDETHTLDG---RSVEVKRAIPREKTAPGGGSRLKKIFVGGLAPTVTEQDFRHYFEEF 130
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDF 177
G + V+ + T + + +GFI F
Sbjct: 131 GKITDAVVMIDRDTQRSRGFGFITF 155
>gi|195383760|ref|XP_002050594.1| GJ22239 [Drosophila virilis]
gi|194145391|gb|EDW61787.1| GJ22239 [Drosophila virilis]
Length = 301
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 88/186 (47%), Gaps = 11/186 (5%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+++ N+ + +A+ + +G + N N+ D EG SRG+ FV F A AA
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFG--NILNCNVAKD--EEGNSRGYGFVHFDSEEAARAA- 163
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
++K + + + ++ V F P R+ + E H K +++ + + E +R+ + Y
Sbjct: 164 --IEKVNGMLCNNQKVHVVKFI-PRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPY 220
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPM 212
G + L + R+ +GF+ F ++AVA + ++ K+ G++K AR +
Sbjct: 221 GRITSHKLMLDEEGRSRR-FGFVAFENPQSAVAAVIGLHGKQL--GDNKFLYVARALSKA 277
Query: 213 PKTQAV 218
+ Q +
Sbjct: 278 ERQQEI 283
>gi|340711039|ref|XP_003394089.1| PREDICTED: APOBEC1 complementation factor-like [Bombus terrestris]
Length = 471
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 1/129 (0%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G R G S DN LF G + KE Q+L +EG+ +I L + L+RGF
Sbjct: 125 GHRIGVVKSVDNCRLFFGGVPKNKCKEEFMQELNKI-LEGIIDIYLYPSAHDKTLNRGFI 183
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
FV F H A A ++L V+ E V A EP D E+M +V +F+ +
Sbjct: 184 FVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEVMENVTALFVRNLSL 243
Query: 139 HWKENQIRD 147
+ + +IRD
Sbjct: 244 NMPQQKIRD 252
>gi|407424737|gb|EKF39117.1| RNA-binding protein, putative [Trypanosoma cruzi marinkellei]
Length = 619
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 38/66 (57%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
V++ +P HW +++R +G +I + + +T K ++YGF+ F T E A C+ ++
Sbjct: 178 VYVSELPAHWNTDKLRSVCSAFGTIISAKVVHDGATNKSREYGFVMFETEEQAALCVESL 237
Query: 191 NNKEFS 196
NN+ +
Sbjct: 238 NNRSMA 243
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188
+ VF+ G+P HW +++R G V+R + R+ +T+ +GF+ F T E A AC+
Sbjct: 329 RNVFIQGLPLHWNTDKLRGLCGTCGRVLRAKVVRDATTSLPCGHGFVLFETEEQAAACVA 388
Query: 189 AIN 191
+N
Sbjct: 389 TLN 391
>gi|354472305|ref|XP_003498380.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like
[Cricetulus griseus]
Length = 423
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 81 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 136
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 137 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 189
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 190 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 224
>gi|296196619|ref|XP_002745917.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Callithrix jacchus]
Length = 341
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 67
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 68 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 178
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 179 QEMQEVQSSRSGRGGNF 195
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 19/170 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 144 VFIKNLDTAIDNKALHDTFAAFG-----NILSCKVAQDEFGNSKGYGFVHYETAEAATNA 198
Query: 92 YKR-----LQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQI 145
K L + V GH A+ R+ E+ A+ V++ + P +
Sbjct: 199 IKHVNGMLLNEKKVFVGH-------HIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEEF 251
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R+ + YG++ L+R+ T K + +GF++F H++A A + +N+KE+
Sbjct: 252 RELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEY 301
>gi|197101465|ref|NP_001127331.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Pongo abelii]
gi|75070806|sp|Q5RBU8.1|ROA2_PONAB RecName: Full=Heterogeneous nuclear ribonucleoproteins A2/B1;
Short=hnRNP A2/B1
gi|55728019|emb|CAH90762.1| hypothetical protein [Pongo abelii]
Length = 353
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 92/197 (46%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 79
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 80 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 132
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ V I + + N++V+ +A
Sbjct: 133 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD-PVDKIVLQKHHTINGHNAEVR-KALSR 190
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 191 QEMQEVQSSRSGRGGNF 207
>gi|349804307|gb|AEQ17626.1| putative heterogeneous nuclear ribonucleoprotein A3 [Hymenochirus
curtipes]
Length = 249
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 16 LFIGGLSFETTDDSLREHFEQWG--KLTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE AH VK +F+ G+ +E +RD
Sbjct: 72 MTARPHKVDGRVVEPKRAVS-------REDSARPGAHLTVKKIFVGGIKEDTEEYHLRDY 124
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+GYG + I + + + K++ + F+ F H+
Sbjct: 125 FEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 159
>gi|22531168|gb|AAM97088.1| RNA-binding protein-like [Arabidopsis thaliana]
Length = 448
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 113/249 (45%), Gaps = 44/249 (17%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 90
LF+G I +E ++ +YG VE V ++ D + G +RGF F++F+ D
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAV----IMRD-RATGRARGFGFIVFA---DPCV 59
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEP-------LREPDP-EIMAHV-------KTVFLDG 135
+ + + ++ G RTV+ A P R P +M+ V K +F+ G
Sbjct: 60 SERVIMDKHIIDG---RTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGG 116
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P E + ++ +G + +V+ + +T + + +GFI F + +A ++ + +K F
Sbjct: 117 LPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDA----VDRVLHKTF 172
Query: 196 SDGNSK-VKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRAN 254
+ N K V+++ + + ++ ++ G G GS+R A +FN N
Sbjct: 173 HELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRM---------PANSYFN--N 221
Query: 255 FQRGRGFYQ 263
F G GFY
Sbjct: 222 FAPGPGFYN 230
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 22/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ + +A+ +G NI Q E G+S+G+ FV + A A
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFG-----NILSCKVAQDEFGVSKGYGFVHYETAEAANNA 186
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L V GH ++ + F E + A+ +++ + P ++ +
Sbjct: 187 IKHVNGMLLNDKKVFVGHHISKKDRQSKFEE--------MKANFTNIYIKNIDPEVEDEE 238
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R + +G++ L+R+ S K + +GF++FSTHE+A A + +N+KE
Sbjct: 239 FRKLFEKFGEITSATLSRD-SEGKSRGFGFVNFSTHESAQAAVEEMNDKEV 288
>gi|348570610|ref|XP_003471090.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like [Cavia
porcellus]
Length = 356
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 27/204 (13%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G +V + SRGF FV +SC VDA A
Sbjct: 15 LFIGGLSFETTDDSLREHFEKWGTL---TDRVVMRVPQTKRSRGFGFVTYSCVEEVDA-A 70
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 71 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA----AVACINAIN--NKEFSDGNSKV 202
+ YG + I + + + K++ + F+ F H+ V + IN N E SK
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Query: 203 KLRARLSNPMPKTQAVKGGMSGGF 226
++++ +Q GG SG F
Sbjct: 184 EMQS------AGSQRGCGGGSGNF 201
>gi|18423760|ref|NP_568826.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|42573682|ref|NP_974937.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|15292725|gb|AAK92731.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|20465895|gb|AAM20100.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|332009263|gb|AED96646.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332009264|gb|AED96647.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 460
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 113/249 (45%), Gaps = 44/249 (17%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 90
LF+G I +E ++ +YG VE V ++ D + G +RGF F++F+ D
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAV----IMRD-RATGRARGFGFIVFA---DPCV 59
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEP-------LREPDP-EIMAHV-------KTVFLDG 135
+ + + ++ G RTV+ A P R P +M+ V K +F+ G
Sbjct: 60 SERVIMDKHIIDG---RTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGG 116
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P E + ++ +G + +V+ + +T + + +GFI F + +A ++ + +K F
Sbjct: 117 LPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDA----VDRVLHKTF 172
Query: 196 SDGNSK-VKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRAN 254
+ N K V+++ + + ++ ++ G G GS+R A +FN N
Sbjct: 173 HELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRM---------PANSYFN--N 221
Query: 255 FQRGRGFYQ 263
F G GFY
Sbjct: 222 FAPGPGFYN 230
>gi|296490667|tpg|DAA32780.1| TPA: mCG1035404-like [Bos taurus]
Length = 380
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 93 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 180
>gi|395863183|ref|XP_003803782.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein A/B-like, partial [Otolemur garnettii]
Length = 482
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 11/155 (7%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHV 86
ED +FVG + +W + K+ LKDY + EN++ + + G SRGF F++F
Sbjct: 144 EDAGKMFVGGL--SW--DISKKDLKDYFTKFGENVDCTLKMDPNTGXSRGFGFILFR--- 196
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 146
DA + K L + + P K A A ++P I V + G+ P E +IR
Sbjct: 197 DAASVEKVLDQKEHRLDGPVIDPKKAMAAMKKDPVKRIFV---CVCVGGLNPEATEEKIR 253
Query: 147 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 181
+ +G++ I L + KR + FI F E
Sbjct: 254 EYFGDFGEIEAIELPMDPKLNKRXSFVFITFKEEE 288
>gi|348564390|ref|XP_003467988.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Cavia porcellus]
Length = 383
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 91/199 (45%), Gaps = 19/199 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 53 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 109
Query: 93 KRLQKPDVVFG---HPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRD 147
+P + G P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 110 --AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRD 160
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 207
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 161 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKAL 218
Query: 208 LSNPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 219 SRQEMQEVQSSRSGRGGNF 237
>gi|148666221|gb|EDK98637.1| mCG119114, isoform CRA_a [Mus musculus]
Length = 357
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 67 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 123
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 124 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 176
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 177 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 234
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 235 QEMQEVQSSRSGRGGNF 251
>gi|198450380|ref|XP_001357960.2| GA19533, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|198131011|gb|EAL27096.2| GA19533, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 468
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 14/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E +K +G V ++ ++ D + SRGF F+ ++ AM
Sbjct: 41 LFIGGLAPYTTEEGLKVFYGQWG--KVVDVVVMRDAATK-RSRGFGFITYT--KSAMVDK 95
Query: 93 KRLQKPDVVFGHPERTV--KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
+ +P ++ G +TV K A P RE E VK +F+ G+ + E+ +R+
Sbjct: 96 AQENRPHIIDG---KTVEAKRALPRPERETR-ETNISVKKLFVGGLKDNHDEDCLREYFV 151
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 210
+G V+ + L + +T KR+ + FI+F ++ A AI K+ S V ++ + N
Sbjct: 152 QFGRVVSVKLLTDKTTGKRRGFAFIEFDDYD---AVDKAILQKQHSIKYVHVDVKKSIYN 208
Query: 211 PMPKTQAVKGGMSGGFR 227
K + +G + G +
Sbjct: 209 LEKKDKQAQGPPTNGSK 225
>gi|125538654|gb|EAY85049.1| hypothetical protein OsI_06408 [Oryza sativa Indica Group]
Length = 504
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 80/180 (44%), Gaps = 13/180 (7%)
Query: 25 APSEDND-TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 83
AP D+ +FVG + T+E+ + + YG + + ++ D +H + RGF FV FS
Sbjct: 168 APGGDSSGKIFVGGVAWETTEESFSKHFEKYGA--ITDSVIMKD-KHTKMPRGFGFVTFS 224
Query: 84 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
D K L+ V+ G + P P + +F+ G+P E+
Sbjct: 225 ---DPSVIDKVLEDEHVIDGRTLKGQSQGSNVIKDGPRP------RKIFVGGLPSSLTED 275
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203
++R+ YG ++ + + ST + + +GF+ F + ++ I+ ++ ++K
Sbjct: 276 ELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIK 335
>gi|9758187|dbj|BAB08572.1| RNA-binding protein-like [Arabidopsis thaliana]
Length = 473
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 113/249 (45%), Gaps = 44/249 (17%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 90
LF+G I +E ++ +YG VE V ++ D + G +RGF F++F+ D
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAV----IMRD-RATGRARGFGFIVFA---DPCV 59
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEP-------LREPDP-EIMAHV-------KTVFLDG 135
+ + + ++ G RTV+ A P R P +M+ V K +F+ G
Sbjct: 60 SERVIMDKHIIDG---RTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGG 116
Query: 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
+P E + ++ +G + +V+ + +T + + +GFI F + +A ++ + +K F
Sbjct: 117 LPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDA----VDRVLHKTF 172
Query: 196 SDGNSK-VKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRAN 254
+ N K V+++ + + ++ ++ G G GS+R A +FN N
Sbjct: 173 HELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRM---------PANSYFN--N 221
Query: 255 FQRGRGFYQ 263
F G GFY
Sbjct: 222 FAPGPGFYN 230
>gi|346974495|gb|EGY17947.1| polyadenylate-binding protein [Verticillium dahliae VdLs.17]
Length = 759
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 22/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFG-----NILSCKVAQDEHGNSKGYGFVHYETDEAAAQA 205
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L + V GH P++ + F E + A+ V++ + +++
Sbjct: 206 IKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE--------MKANFTNVYVKNINSEASDDE 257
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
RD YG+V LAR+ K + +GF++F+THEAA + +N K+F
Sbjct: 258 FRDLFTKYGEVTSSSLARDQE-GKSRGFGFVNFTTHEAASQAVEELNGKDF 307
>gi|157059863|dbj|BAF79677.1| heterogeneous nuclear ribonucleoprotein B0a [Rattus norvegicus]
Length = 301
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 67
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 68 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ V I + N++V+ +A
Sbjct: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD-PVDKIFLQKYHTINGHNAEVR-KALSR 178
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 179 QEMQEVQSSRSGRGGNF 195
>gi|226507640|ref|NP_001146692.1| uncharacterized protein LOC100280293 [Zea mays]
gi|219888359|gb|ACL54554.1| unknown [Zea mays]
gi|413934065|gb|AFW68616.1| hypothetical protein ZEAMMB73_548572 [Zea mays]
gi|413934066|gb|AFW68617.1| hypothetical protein ZEAMMB73_548572 [Zea mays]
gi|413934067|gb|AFW68618.1| hypothetical protein ZEAMMB73_548572 [Zea mays]
Length = 453
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 37/205 (18%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
D LF+G I T+E + + YG V ++ D + G RGF FV+F+ D
Sbjct: 3 SDQGKLFIGGISWETTEEKLSEHFSAYGE--VTQAAVMRD-KITGRPRGFGFVVFA---D 56
Query: 88 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH-------------------- 127
A + LQ P + G RTV V A E A+
Sbjct: 57 PAAVDRALQDPHTLDG---RTVDVKRALSREEQQASKAANPSGGRNSGGGGGGGGGSDAS 113
Query: 128 ---VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 184
K +F+ G+P E+ R + +G V +V+ + +T + + +GFI F + +A
Sbjct: 114 GARTKKIFVGGLPSTLTEDGFRQYFETFGIVTDVVVMYDQNTQRPRGFGFITFDSEDA-- 171
Query: 185 ACINAINNKEFSD-GNSKVKLRARL 208
++ + K F D G V+++ L
Sbjct: 172 --VDRVLQKTFHDLGGKLVEVKRAL 194
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+F+ N+ + +A+ +G + ++ G SRGFAFV +S A AA
Sbjct: 138 IFIKNLDQSIDNKALHDTFAAFG----DILSCKVGTDENGKSRGFAFVHYSTGEAADAAI 193
Query: 93 KR-----LQKPDVVFGH----PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
K L V GH ER KV E+ A V++ V +
Sbjct: 194 KAVNGMLLNDKKVYVGHHVGKKERLSKVE----------ELRAQFTNVYIKNVDLEVTDA 243
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
+ D +K +G I + L+R+ K +GF+++ HE+A ++ +N KE +
Sbjct: 244 EFEDLVKPFGPTISVALSRD-EQGVSKGFGFVNYENHESAKQAVDELNEKEIN 295
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 33/184 (17%), Positives = 77/184 (41%), Gaps = 14/184 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+++ N+ T + +K +G I++ +G+S+GF FV + H A A
Sbjct: 231 VYIKNVDLEVTDAEFEDLVKPFG----PTISVALSRDEQGVSKGFGFVNYENHESAKQAV 286
Query: 93 KRLQKPDV---------VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
L + ++ ER ++ + + + E + +++ + W ++
Sbjct: 287 DELNEKEINGKKLYAGRAQTKSEREAELKKSHEEKRIENEAKSAGVNLYIKNLDDEWDDD 346
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203
++R + + +G + + R+ S R +GF+ +S+ + A ++ +N K V
Sbjct: 347 RLRAEFEAFGTITSSKVMRDDSGVSR-GFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVA 405
Query: 204 LRAR 207
L R
Sbjct: 406 LAQR 409
>gi|157059859|dbj|BAF79675.1| heterogeneous nuclear ribonucleoprotein A2 [Rattus norvegicus]
Length = 341
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 67
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 68 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ V I + N++V+ +A
Sbjct: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD-PVDKIFLQKYHTINGHNAEVR-KALSR 178
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 179 QEMQEVQSSRSGRGGNF 195
>gi|426241336|ref|XP_004014547.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Ovis
aries]
Length = 320
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 15/159 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D +G SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTKG-SRGFGFVTYATVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE AH VK +F+ G+ +E+ +RD
Sbjct: 72 MNARPHKVDGRVVEPKRAVS-------REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDY 124
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
+ YG + I + + + K++ + F+ F H++ +
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>gi|449268325|gb|EMC79194.1| Heterogeneous nuclear ribonucleoproteins A2/B1, partial [Columba
livia]
Length = 339
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 90/199 (45%), Gaps = 19/199 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 9 LFIGGLSFETTEESLRSYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 65
Query: 93 KRLQKPDVVFG---HPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRD 147
+P + G P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 66 --AARPHTIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRD 116
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 207
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 117 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKAL 174
Query: 208 LSNPMPKTQAVKGGMSGGF 226
M + Q + G G F
Sbjct: 175 SRQEMQEVQNSRSGRGGNF 193
>gi|351704285|gb|EHB07204.1| Heterogeneous nuclear ribonucleoproteins A2/B1, partial
[Heterocephalus glaber]
gi|355560744|gb|EHH17430.1| Heterogeneous nuclear ribonucleoproteins A2/B1, partial [Macaca
mulatta]
gi|355747762|gb|EHH52259.1| Heterogeneous nuclear ribonucleoproteins A2/B1, partial [Macaca
fascicularis]
Length = 352
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 22 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 78
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 79 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 131
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 132 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 189
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 190 QEMQEVQSSRSGRGGNF 206
>gi|75074832|sp|Q9TTV2.1|ROA2_SAGOE RecName: Full=Heterogeneous nuclear ribonucleoproteins A2/B1;
Short=hnRNP A2/B1; AltName: Full=Vitamin D response
element-binding protein 2; Short=VDRE-BP 2
gi|6273351|gb|AAF06330.1|AF192348_1 vitamin D response element binding protein [Saguinus oedipus]
Length = 341
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 11 LFIGGLSFQTTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 67
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 68 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 121 AEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 178
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 179 QEMQEVQSSRSGRGGNF 195
>gi|194861277|ref|XP_001969747.1| GG23780 [Drosophila erecta]
gi|190661614|gb|EDV58806.1| GG23780 [Drosophila erecta]
Length = 646
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 16/177 (9%)
Query: 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH 85
P DN +FVG I TW + ++Q + +G V +N++ D + +SRG FV +
Sbjct: 306 PDADNIKMFVGQIPKTWDETRLRQMFEQFG--AVHTLNVLRD-KVTSISRGCCFVTYYTR 362
Query: 86 VDAMAAYKRLQKPDVVFG--HPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
A+ A L + G HP + +K A +E E + +F+ + + E
Sbjct: 363 KAALRAQDALHNIKTLDGMHHPIQ-MKPADSENRNE---------RKLFVGMLNKKYTEA 412
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 200
+R G+G + + R+ + + K F+ F+T + A+ I A++ + +G S
Sbjct: 413 DVRQLFTGHGTIEECTVLRDQA-GQSKGCAFVTFATKQNAIGAIKALHQSQTMEGCS 468
>gi|390177202|ref|XP_003736301.1| GA19533, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388858945|gb|EIM52374.1| GA19533, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 462
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 14/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E +K +G V ++ ++ D + SRGF F+ ++ AM
Sbjct: 41 LFIGGLAPYTTEEGLKVFYGQWG--KVVDVVVMRDAATK-RSRGFGFITYT--KSAMVDK 95
Query: 93 KRLQKPDVVFGHPERTV--KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
+ +P ++ G +TV K A P RE E VK +F+ G+ + E+ +R+
Sbjct: 96 AQENRPHIIDG---KTVEAKRALPRPERETR-ETNISVKKLFVGGLKDNHDEDCLREYFV 151
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 210
+G V+ + L + +T KR+ + FI+F ++ A AI K+ S V ++ + N
Sbjct: 152 QFGRVVSVKLLTDKTTGKRRGFAFIEFDDYD---AVDKAILQKQHSIKYVHVDVKKSIYN 208
Query: 211 PMPKTQAVKGGMSGGFR 227
K + +G + G +
Sbjct: 209 LEKKDKQAQGPPTNGSK 225
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 22/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 152 VFIKNLDVAIDNKALHDTFAAFG-----NILSCKVAQDESGNSKGYGFVHYETDEAASQA 206
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L + V GH P++ + F E + A+ +++ +P ++Q
Sbjct: 207 IKHVNGMLLNEKKVFVGHHIPKKDRQSKFEE--------MKANFTNIYVKNIPADATDDQ 258
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R+ + +GDV LAR+ K + +GF++F HE A A ++ +N K+F
Sbjct: 259 FRELFEKFGDVTSASLARD-EAGKNRGFGFVNFINHEHASAAVDELNGKDF 308
>gi|395542045|ref|XP_003772945.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like
[Sarcophilus harrisii]
Length = 475
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 17/156 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF--SCH 85
+D+ +F+G + +K+ + + L +G V + + +D G SRGF FV+F +
Sbjct: 200 QDDGKMFIGGLSWDTSKKDLTEYLSRFGE--VVDCTIKTD-PVTGRSRGFGFVLFKDAAS 256
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
VD + K K D P+R + EP K VF+ G+ P E QI
Sbjct: 257 VDKVLELKE-HKLDGKLIDPKRAKALKGKEP-----------PKKVFVGGLSPDTSEEQI 304
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 181
++ +G++ I L + T +R+ + FI ++ E
Sbjct: 305 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEE 340
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 19/170 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 144 VFIKNLDTAIDNKALHDTFAAFG-----NILSCKVAQDEFGNSKGYGFVHYETAEAATNA 198
Query: 92 YKR-----LQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQI 145
K L + V GH A+ R+ E+ A+ V++ + P +
Sbjct: 199 IKHVNGMLLNEKKVFVGH-------HIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEEF 251
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R+ + YG++ L+R+ T K + +GF++F H++A A + +N+KE+
Sbjct: 252 RELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEY 301
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 22/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ + +A+ +G NI Q E G+S+G+ FV + A A
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFG-----NILSCKVAQDEFGVSKGYGFVHYETAEAANNA 186
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L V GH ++ + F E + A+ +++ + P ++ +
Sbjct: 187 IKHVNGMLLNDKKVFVGHHISKKDRQSKFEE--------MKANFTNIYIKNIDPEVEDEE 238
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R + +G++ L+R+ S K + +GF++FSTHE+A A + +N+KE
Sbjct: 239 FRKLFEKFGEITSATLSRD-SEGKSRGFGFVNFSTHESAQAAVEEMNDKEV 288
>gi|351694477|gb|EHA97395.1| Heterogeneous nuclear ribonucleoprotein A3 [Heterocephalus glaber]
Length = 282
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 26/203 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + N ++ D Q + SRGF FV +SC VDA A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTNCAVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 93 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN---AIN--NKEFSDGNSKVK 203
+ YG + + + + K++ + F F H+ + IN N+E SK +
Sbjct: 146 FEKYGKTETMEVMEDRQSGKKRGFAFATFDDHDTVDKIVQKYHTINGHNREVKKALSKQE 205
Query: 204 LRARLSNPMPKTQAVKGGMSGGF 226
+++ S Q GG SG F
Sbjct: 206 MQSAGS------QRGCGGGSGNF 222
>gi|14043072|ref|NP_112533.1| heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1 [Homo
sapiens]
gi|388452958|ref|NP_001252700.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Macaca mulatta]
gi|73976084|ref|XP_532495.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Canis lupus familiaris]
gi|194209740|ref|XP_001498416.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Equus caballus]
gi|296209404|ref|XP_002751505.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Callithrix jacchus]
gi|301754131|ref|XP_002912905.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Ailuropoda melanoleuca]
gi|332242622|ref|XP_003270484.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Nomascus leucogenys]
gi|332864911|ref|XP_519003.3| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Pan troglodytes]
gi|335305558|ref|XP_003134901.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Sus scrofa]
gi|395830927|ref|XP_003788564.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 [Otolemur
garnettii]
gi|397472890|ref|XP_003807965.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Pan paniscus]
gi|402863877|ref|XP_003896220.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Papio anubis]
gi|403287971|ref|XP_003935192.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Saimiri boliviensis boliviensis]
gi|410952508|ref|XP_003982921.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Felis catus]
gi|426227786|ref|XP_004007996.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 [Ovis
aries]
gi|426355699|ref|XP_004045247.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Gorilla gorilla gorilla]
gi|133257|sp|P22626.2|ROA2_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoproteins A2/B1;
Short=hnRNP A2/B1
gi|337453|gb|AAA60271.1| hnRNP B1 protein [Homo sapiens]
gi|565643|dbj|BAA06031.1| hnRNP B1 protein [Homo sapiens]
gi|119614243|gb|EAW93837.1| heterogeneous nuclear ribonucleoprotein A2/B1, isoform CRA_c [Homo
sapiens]
gi|119614245|gb|EAW93839.1| heterogeneous nuclear ribonucleoprotein A2/B1, isoform CRA_c [Homo
sapiens]
gi|387542844|gb|AFJ72049.1| heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1 [Macaca
mulatta]
gi|410225454|gb|JAA09946.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Pan troglodytes]
gi|410343563|gb|JAA40595.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Pan troglodytes]
Length = 353
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 79
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 80 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 132
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 133 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 190
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 191 QEMQEVQSSRSGRGGNF 207
>gi|395540406|ref|XP_003772146.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1
[Sarcophilus harrisii]
Length = 385
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 36 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 92
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 93 SARPHSIDGRVVEPKRAVA-------REESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 145
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 146 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNTEVRKALSR 203
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 204 QEMQEVQSSRSGRGGNF 220
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 19/170 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFG-----NILSCKVAQDEYGNSKGYGFVHYETAEAATNA 202
Query: 92 YKR-----LQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQI 145
K L + V GH A+ R+ E+ A+ +++ V + +
Sbjct: 203 IKHVNGMLLNEKKVFVGH-------HIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEF 255
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R + YG++ L+R+ T K + +GF++FS HEAA A + A+N E
Sbjct: 256 RGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYEL 305
>gi|124028629|sp|O88569.2|ROA2_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoproteins A2/B1;
Short=hnRNP A2/B1
gi|23266713|gb|AAN16352.1|AF452567_1 heterogeneous nuclear ribonucleoprotein A2/B1/B0 [Mus musculus]
Length = 353
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 79
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 80 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 132
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 133 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 190
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 191 QEMQEVQSSRSGRGGNF 207
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 22/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ + +A+ +G NI Q E G+S+G+ FV + A A
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFG-----NILSCKVAQDEFGVSKGYGFVHYETAEAANNA 186
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L V GH ++ + F E + A+ +++ + P ++ +
Sbjct: 187 IKHVNGMLLNDKKVFVGHHISKKDRQSKFEE--------MKANFTNIYIKNIDPEVEDEE 238
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R + +G++ L+R+ S K + +GF++FSTHE+A A + +N+KE
Sbjct: 239 FRKLFEKFGEITSATLSRD-SEGKSRGFGFVNFSTHESAQAAVEEMNDKEV 288
>gi|354472764|ref|XP_003498607.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Cricetulus griseus]
Length = 357
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 27 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 83
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 84 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 136
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 137 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 194
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 195 QEMQEVQSSRSGRGGNF 211
>gi|449533488|ref|XP_004173706.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein D-like [Cucumis sativus]
Length = 462
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 26/200 (13%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
D LF+G I +++ +K +YG E + + + I RGF FV+FS D
Sbjct: 3 SDQGKLFIGGISWETSEDKLKDYFSNYG-EVMHTVVMRDKITSR--PRGFGFVVFS---D 56
Query: 88 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP-------------DPEIMAHVKTVFLD 134
+ LQ + G + E + P K F+
Sbjct: 57 PSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNGRNSGGSGGGNMRTKKXFVG 116
Query: 135 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
G+PP E ++ + YG V +V+ + +T + + +GFI F T EA ++ + +K
Sbjct: 117 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEA----VDRVLHKT 172
Query: 195 FSDGNSKVKLRARLSNPMPK 214
F D N K + + +PK
Sbjct: 173 FHDLNGK---QVEVKRALPK 189
>gi|189203851|ref|XP_001938261.1| nuclear localization sequence-binding protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985360|gb|EDU50848.1| nuclear localization sequence-binding protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 475
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Query: 25 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC 84
A E LFVGN+ ++ ++++ + +G + +++D + G ++GF +V F+
Sbjct: 215 AAEEGVKNLFVGNMSWNIDEDWLRREFEGFGE--IVGCRVITD-RETGRAKGFGYVEFAN 271
Query: 85 HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK-----------TVFL 133
DA A K + + ++ R + V F+ P +PD A T+FL
Sbjct: 272 AADAAKAQKEMHEYEL----DGRQLNVDFSTPRAKPDANGGARANKYGDKRSPPSNTLFL 327
Query: 134 DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
V I++ YG + R+ L + T K +G++DFS+ + A A + A+N +
Sbjct: 328 GNVSFECSNESIQEVFAEYGSITRVSLPTDRDTGALKGFGYVDFSSQQEATAALEALNGQ 387
Query: 194 EF 195
+
Sbjct: 388 DI 389
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAM 89
++TLF+GN+ + E+I++ +YG + ++L +D + G +GF +V FS +A
Sbjct: 322 SNTLFLGNVSFECSNESIQEVFAEYG--SITRVSLPTD-RDTGALKGFGYVDFSSQQEAT 378
Query: 90 AAYKRLQKPDVVFGHPERTVKVAFAEP 116
AA + L D+ R +++ +A P
Sbjct: 379 AALEALNGQDI----GGRAIRIDYATP 401
>gi|390474591|ref|XP_002757923.2| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 3 [Callithrix jacchus]
Length = 339
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 11/157 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R D P+R V E + PD + VK +F+ G+ +E+ +RD +
Sbjct: 72 VNARPHNVDGRVVEPKRAVS---REDSQRPDAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
YG + I + + + K++D+ F+ F H++ +
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRDFAFVTFDDHDSVDKIV 163
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 22/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 154 VFIKNLDVAIDNKALHDTFAAFG-----NILSCKVAQDENGNSKGYGFVHYETDEAASQA 208
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L + V GH P++ + F E + A+ +++ + +++
Sbjct: 209 IKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE--------MKANFTNIYIKNISGEVTDDE 260
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
RD +GDV LAR+ K + +GF++F+THEAA ++ +N K+F
Sbjct: 261 FRDLFTPFGDVTSSSLARDQE-GKSRGFGFVNFTTHEAAAKAVDDLNGKDF 310
>gi|356547342|ref|XP_003542073.1| PREDICTED: uncharacterized RNA-binding protein C660.15-like
[Glycine max]
Length = 353
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LFVG I ++E+ YG E +++ + + + G RGF FV F+ ++ A
Sbjct: 42 LFVGGISWETSQESFFNYFSKYG-EVTDSVIMTNKLS--GRPRGFGFVTFA---NSAVAD 95
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+ L + + R V+V P + D + K +F+ G+ + ++++R+ Y
Sbjct: 96 EVLAQEHTI---DHRVVEVKRTVPREDVDVTGVFKTKKIFVGGIAQFFTDDELREYFSPY 152
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEA-----AVACINAINNKE 194
G+VI + + +T + + +GF+ F ++ +V I+ I K+
Sbjct: 153 GNVIECQIMLDHNTGRSRGFGFVTFDDEDSVEKVFSVGKIHEIGGKQ 199
>gi|328786224|ref|XP_001120281.2| PREDICTED: APOBEC1 complementation factor-like [Apis mellifera]
Length = 477
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 1/129 (0%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G R G S DN LF G + +KE Q+L +EG+ +I L + L+RGF
Sbjct: 129 GHRIGVVKSVDNCRLFFGGVPKNKSKEEFMQELTKI-LEGIIDIYLYPSAHDKTLNRGFI 187
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
FV F H A A ++L V+ E V A EP D EIM V +F+ +
Sbjct: 188 FVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEIMESVTALFVRNLNL 247
Query: 139 HWKENQIRD 147
+ ++RD
Sbjct: 248 DMSQQKVRD 256
>gi|427789733|gb|JAA60318.1| Putative rox8 [Rhipicephalus pulchellus]
Length = 406
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 15/188 (7%)
Query: 32 TLFVGNICNTWTKEAIKQKLKDYG-VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 90
TL+VGN+ T+E + G V+G + I HE + + FV FS H A +
Sbjct: 14 TLYVGNLDTAVTEELLVAVFGQMGQVKGCKII-------HEPGNDPYCFVEFSDHQSAAS 66
Query: 91 AYKRLQKPDVVFGHPERTVKVAFA-EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQI 149
A + K + FG + +KV +A P P + H +F+ + P + Q+RD
Sbjct: 67 ALLAMNK-RLCFG---KEMKVNWATSPGNTPKLDTSKH-HHIFVGDLSPEIETTQLRDAF 121
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+GD+ + R+ T K K YGF+ F A I +N + + R
Sbjct: 122 APFGDISDCRVVRDPQTLKSKGYGFVSFVKKADAENAIGTMNGQWLGSRAIRTNWATR-K 180
Query: 210 NPMPKTQA 217
P +TQA
Sbjct: 181 PPANRTQA 188
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 19/170 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 164 VFIKNLDTAIDNKALHDTFAAFG-----NILSCKVAQDEYGNSKGYGFVHYETAEAATNA 218
Query: 92 YKR-----LQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQI 145
K L + V GH A+ R+ E+ A+ +++ V + +
Sbjct: 219 IKHVNGMLLNEKKVFVGH-------HIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEF 271
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R + YG++ L+R+ T K + +GF++FS HEAA A + A+N E
Sbjct: 272 RGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYEL 321
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 14/167 (8%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 204 VFIKNLDVAIDNKALHDTFAAFG-----NILSCKVAQDENGNSKGYGFVHYETDEAAANA 258
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDP---EIMAHVKTVFLDGVPPHWKENQIRDQ 148
K + ++ E+ V V + P ++ E+ A+ V++ +P + + R+
Sbjct: 259 IKHVN--GMLLN--EKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIPAEVTDEEFREL 314
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
YGDV LAR+ K + +GF++F+THEAA + +N K+F
Sbjct: 315 FAKYGDVTSSSLARS-DEGKSRGFGFVNFTTHEAASKAVEELNGKDF 360
>gi|116007320|ref|NP_001036356.1| bruno-2, isoform E [Drosophila melanogaster]
gi|442627593|ref|NP_001260411.1| bruno-2, isoform L [Drosophila melanogaster]
gi|113194979|gb|ABI31310.1| bruno-2, isoform E [Drosophila melanogaster]
gi|440213741|gb|AGB92946.1| bruno-2, isoform L [Drosophila melanogaster]
Length = 893
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 16/177 (9%)
Query: 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH 85
P DN +FVG I TW + ++Q + +G V +N++ D + +SRG FV +
Sbjct: 290 PDADNIKMFVGQIPKTWDETRLRQMFEQFG--PVHTLNVLRD-KVTSISRGCCFVTYYTR 346
Query: 86 VDAMAAYKRLQKPDVVFG--HPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
A+ A L + G HP + +K A +E E + +F+ + + E
Sbjct: 347 KAALRAQDALHNIKTLDGMHHPIQ-MKPADSENRNE---------RKLFVGMLNKKYTEA 396
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 200
+R G+G + + R+ + + K F+ F+T + A+ I A++ + +G S
Sbjct: 397 DVRQLFTGHGTIEECTVLRDQA-GQSKGCAFVTFATKQNAIGAIKALHQSQTMEGCS 452
>gi|410036104|ref|XP_525973.4| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like [Pan
troglodytes]
Length = 371
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 64 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 119
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 120 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 172
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 173 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 207
>gi|293336929|ref|NP_001168878.1| uncharacterized protein LOC100382683 [Zea mays]
gi|223973459|gb|ACN30917.1| unknown [Zea mays]
gi|414871120|tpg|DAA49677.1| TPA: hypothetical protein ZEAMMB73_860016 [Zea mays]
Length = 443
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 34/201 (16%)
Query: 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDA 88
D LF+G I T+E + + YG V ++ D + G RGF FV+F+ D
Sbjct: 4 DQGKLFIGGISWETTEEKLSEHFSAYGE--VTQAAVMRD-KTTGRPRGFGFVVFA---DP 57
Query: 89 MAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--------------------V 128
+ LQ P + G RTV V A E A+
Sbjct: 58 AVVDRALQDPHTLDG---RTVDVKRALSREEQQASKAANPSGGRNTGGGNGGGDANGART 114
Query: 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188
K +F+ G+P E+ R + +G V +V+ + +T + + +GFI F + +A ++
Sbjct: 115 KKIFVGGLPSTLTEDGFRQYFQTFGIVTDVVVMYDQNTQRPRGFGFITFDSEDA----VD 170
Query: 189 AINNKEFSD-GNSKVKLRARL 208
+ K F D G V+++ L
Sbjct: 171 HVLQKTFHDLGGKLVEVKRAL 191
>gi|291394569|ref|XP_002713772.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A2/B1
[Oryctolagus cuniculus]
gi|291397610|ref|XP_002715276.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A2/B1
[Oryctolagus cuniculus]
Length = 352
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 79
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 80 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 132
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 133 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 190
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 191 QEMQEVQSSRSGRGGNF 207
>gi|387018108|gb|AFJ51172.1| Heterogeneous nuclear ribonucleoprotein A3-like [Crotalus
adamanteus]
Length = 225
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 27/220 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 15 LFIGGLSFETTDDSLREHFEKWG--ALTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 70
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 71 MSARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA----AVACINAIN--NKEFSDGNSKV 202
+ YG + I + + + K++ + F+ F H+ V + IN N E SK
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Query: 203 KLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRG 242
+++ Q +G S F + Y RG
Sbjct: 184 EMQT------ATAQRSRGSSSSNFMGRGNFGGSGGSYNRG 217
>gi|387539574|gb|AFJ70414.1| heterogeneous nuclear ribonucleoprotein A3 [Macaca mulatta]
Length = 378
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 93 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 180
>gi|324506130|gb|ADY42625.1| Heterogeneous nuclear ribonucleoprotein A1 [Ascaris suum]
Length = 346
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 11/196 (5%)
Query: 22 CGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM 81
G +E +F+G + +T T E +K+ +G E V+ + + SRGF FV
Sbjct: 12 AGALEAEQFRKMFIGGLTSTTTDETLKEFYSTWG-ELVDCVVMRDPTTKR--SRGFGFVT 68
Query: 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHW 140
+S + AA + +P V+ G +TV A P + E K +++ GV
Sbjct: 69 YSKQSEVNAAME--NRPHVIDG---KTVDPKRAVPRDQSQRNEANVSSKRLYISGVREGH 123
Query: 141 KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 200
E D YG+VI+ + + +T K + + F+ F ++A C+ I N ++
Sbjct: 124 TEEMFTDYFSNYGNVIKCEVIVDKNTGKPRGFAFVTFDDYDAVDKCV-LIKNHMINNARC 182
Query: 201 KVKLRARLSNPMPKTQ 216
VK +A M + Q
Sbjct: 183 DVK-KALSKEEMNRAQ 197
>gi|390474589|ref|XP_002757922.2| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 2 [Callithrix jacchus]
Length = 320
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 11/157 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEEVDA-A 71
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R D P+R V E + PD + VK +F+ G+ +E+ +RD +
Sbjct: 72 VNARPHNVDGRVVEPKRAVS---REDSQRPDAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
YG + I + + + K++D+ F+ F H++ +
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRDFAFVTFDDHDSVDKIV 163
>gi|327274637|ref|XP_003222083.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Anolis carolinensis]
Length = 349
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 19/199 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD---AM 89
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AM
Sbjct: 19 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAEVDSAM 75
Query: 90 AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRD 147
AA R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 76 AA--RPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRD 126
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 207
YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 127 YFSEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKAL 184
Query: 208 LSNPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 185 SRQEMQEVQSSRSGRGGNF 203
>gi|225450219|ref|XP_002265629.1| PREDICTED: 30S ribosomal protein 2, chloroplastic [Vitis vinifera]
gi|297736206|emb|CBI24844.3| unnamed protein product [Vitis vinifera]
Length = 247
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 26/194 (13%)
Query: 22 CGTAPSEDNDT----LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
AP +D L+VGNI T + + ++++G VE ++ D ++ G SR F
Sbjct: 57 TAEAPVATSDVAARRLYVGNIPRTLDSAELARIVEEHG--AVEKAEVMYD-KYSGRSRRF 113
Query: 78 AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE-PLREPDPEIMAHVKTVFLDGV 136
AFV DA AA ++L ++ R +KV E PL D ++ ++ F+D
Sbjct: 114 AFVTMKTVEDANAAIEKLNGTEI----GGREIKVNITEKPLLTLDMSLLQAEESQFIDS- 168
Query: 137 PPH------WKENQIRDQIKGY-----GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 185
PH D + + G V+ ++R T+K +GF+ FS+ E A
Sbjct: 169 -PHKVYVGNLARTVTTDTLTQFFSEKGGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDVEA 227
Query: 186 CINAINNKEFSDGN 199
I++ NN F DG
Sbjct: 228 AISSCNNA-FLDGQ 240
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 21/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 149 IFIKNLDAAIDNKALHDTFAAFG-----NILSCKVAQDEHGNSKGYGFVHYETDEAAQQA 203
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L + V GH P++ + F E + A+ +++ + +++
Sbjct: 204 IKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE--------MKANYTNIYIKNLHADVTDDE 255
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R + YG V +AR+ T K + +GFI+F+THE+A + +N++E
Sbjct: 256 FRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAVEELNSREI 306
>gi|326921905|ref|XP_003207194.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Meleagris gallopavo]
Length = 362
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 100/231 (43%), Gaps = 20/231 (8%)
Query: 1 MLQLFLIYILIFPLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVE 60
ML++ I + + KR E LF+G + T+E+++ + +G +
Sbjct: 1 MLKILSILSSFYISSSVPVKRR-RREKEQFRKLFIGGLSFETTEESLRNYYEQWG--KLT 57
Query: 61 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG---HPERTVKVAFAEPL 117
+ ++ D + SRGF FV FS + AA +P + G P+R V
Sbjct: 58 DCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM--AARPHTIDGRVVEPKRAV-------A 107
Query: 118 REPDPEIMAHV--KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 175
RE + AHV K +F+ G+ +E+ +RD + YG + I + + + K++ +GF+
Sbjct: 108 REESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFV 167
Query: 176 DFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGF 226
F H+ + + +G++ +A M + Q + G G F
Sbjct: 168 TFDDHDPVDKIV--LQKYHTINGHNAEVRKALSRQEMQEVQNSRSGRGGNF 216
>gi|296005552|ref|XP_002809092.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|225632040|emb|CAX64373.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
Length = 414
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 87/186 (46%), Gaps = 12/186 (6%)
Query: 24 TAPSEDND--TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM 81
+ S DN TLFV + W + + K K +G +E+ + +++ S+G+ FV+
Sbjct: 132 SQSSNDNKKTTLFVFYLPPHWNDQDLFDKFKTFG--NLESATVAK--KNDKTSKGYGFVV 187
Query: 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 141
++ A A + K +V G + +KV E + + T+F+ +P W
Sbjct: 188 YTDPHSAALAISNMNKVEVYTG---KRLKVLLKSSSNETNKRKIKPGCTIFVFYLPNDWS 244
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201
+ ++ YG+++ + R + K + YGFI+F ++A+ + +N F+ GN
Sbjct: 245 DKDLKRHFSHYGNILGATIKRE-TNGKSRGYGFINFENQQSAINAVAGMNG--FNAGNKY 301
Query: 202 VKLRAR 207
+K+ +
Sbjct: 302 LKVSIK 307
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 189
T+F+ +PPHW + + D+ K +G++ +A+ + K YGF+ ++ +A I+
Sbjct: 142 TLFVFYLPPHWNDQDLFDKFKTFGNLESATVAK-KNDKTSKGYGFVVYTDPHSAALAISN 200
Query: 190 INNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMS 223
+N E G ++K+ + S+ + +K G +
Sbjct: 201 MNKVEVYTG-KRLKVLLKSSSNETNKRKIKPGCT 233
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 19/170 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFG-----NILSCKVAQDEYGNSKGYGFVHYETAEAATNA 202
Query: 92 YKR-----LQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQI 145
K L + V GH A+ R+ E+ A+ +++ V + +
Sbjct: 203 IKHVNGMLLNEKKVFVGH-------HIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEF 255
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R + YG++ L+R+ T K + +GF++FS HEAA A + A+N E
Sbjct: 256 RGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYEL 305
>gi|297264391|ref|XP_001096533.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
3 [Macaca mulatta]
Length = 336
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 93 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 180
>gi|291391798|ref|XP_002712349.1| PREDICTED: mCG1035404-like [Oryctolagus cuniculus]
Length = 378
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 93 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 180
>gi|17537143|ref|NP_496718.1| Protein TIAR-2 [Caenorhabditis elegans]
gi|6425313|emb|CAB60356.1| Protein TIAR-2 [Caenorhabditis elegans]
Length = 434
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 16/170 (9%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
SED TLFV N+ T E + G + + I EGL+ +AFV FS H
Sbjct: 36 SEDPRTLFVANLDPAITDEFLATLFNQIGAV------MKAKIIFEGLNDPYAFVEFSDHN 89
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP-----DPEIMAHVKTVFLDGVPPHWK 141
A A + +++ E+ + V +A REP PE H VF+ +
Sbjct: 90 QATLALQSHNGRELL----EKEMHVTWAFEPREPGENRSKPETSRHFH-VFVGDLCSEID 144
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191
++R+ +G+V + R+ +T K K YGF+ + E A I+ +N
Sbjct: 145 STKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMN 194
>gi|440897852|gb|ELR49462.1| Heterogeneous nuclear ribonucleoproteins A2/B1, partial [Bos
grunniens mutus]
Length = 349
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 17/164 (10%)
Query: 23 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 82
G +E LF+G++ + T+E++ + +G + + L+ D + SR F F+ F
Sbjct: 12 GKRENEQFCKLFIGDLSSETTEESLWNYYRQWGY--LTDCVLIRDPASQ-KSRRFGFITF 68
Query: 83 SCHVD---AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI--MAHVKTVFLDGVP 137
S + AMAA +V P+R V RE ++ + VK +F+ G+
Sbjct: 69 SSMAELDAAMAARPHFIDGKMVM--PKRAVP-------REDHGKLGALITVKKLFVGGIT 119
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 181
KE+ +RD + YG + I + + + K++ +GFI F H+
Sbjct: 120 EDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFEDHD 163
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 19/170 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFG-----NILSCKVAQDEYGNSKGYGFVHYETAEAATNA 202
Query: 92 YKR-----LQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQI 145
K L + V GH A+ R+ E+ A+ +++ V + +
Sbjct: 203 IKHVNGMLLNEKKVFVGH-------HIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEF 255
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R + YG++ L+R+ T K + +GF++FS HEAA A + A+N E
Sbjct: 256 RGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYEL 305
>gi|402882999|ref|XP_003905018.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like [Papio
anubis]
Length = 378
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 27/204 (13%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P++ V RE + AH VK +F+ G+ +E +RD
Sbjct: 93 MCARPHKVDGRVVEPKKAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA----AVACINAIN--NKEFSDGNSKV 202
+ YG + I + + + K+ + F+ F H+ V + IN N E SK
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKTGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 203 KLRARLSNPMPKTQAVKGGMSGGF 226
++++ S Q GG SG F
Sbjct: 206 EMQSAGS------QRGHGGGSGNF 223
>gi|2204096|emb|CAB05392.1| FCA delta [Arabidopsis thaliana]
gi|5302786|emb|CAB46035.1| FCA delta protein [Arabidopsis thaliana]
gi|7268378|emb|CAB78671.1| FCA delta protein [Arabidopsis thaliana]
Length = 533
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 15/237 (6%)
Query: 19 GKRCGTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
G GT S+ + T LFVG++ T T+E I+ + +G V + L+ D + G +G
Sbjct: 106 GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHG--NVLEVALIKD-KRTGQQQG 162
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FV ++ DA A + L + V+V +A+ RE I +F+ +
Sbjct: 163 CCFVKYATSKDADRAIRALHN-QITLPGGTGPVQVRYADGERE---RIGTLEFKLFVGSL 218
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E ++ + +G V + L R+ R GF+ +S+ E A+A I+ +N
Sbjct: 219 NKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSR-GCGFVKYSSKETAMAAIDGLNGTYTM 277
Query: 197 DG-NSKVKLR-ARLSNPMP---KTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGH 248
G N + +R A P P + A G+ G R R S +G SG H
Sbjct: 278 RGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSGPRFQASGPRPTSNFGDSSGDVSH 334
>gi|355565001|gb|EHH21490.1| hypothetical protein EGK_04572, partial [Macaca mulatta]
Length = 357
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 15 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 70
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 71 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 158
>gi|344270293|ref|XP_003406980.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Loxodonta africana]
Length = 365
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 35 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 91
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 92 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 144
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 145 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 202
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 203 QEMQEVQSSRSGRGGNF 219
>gi|74004684|ref|XP_543761.2| PREDICTED: uncharacterized protein LOC608074 isoform 2 [Canis lupus
familiaris]
gi|410968904|ref|XP_003990939.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 isoform 1
[Felis catus]
Length = 378
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 93 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 180
>gi|74228812|dbj|BAE21894.1| unnamed protein product [Mus musculus]
Length = 379
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 93 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 180
>gi|34740329|ref|NP_919223.1| heterogeneous nuclear ribonucleoprotein A3 [Homo sapiens]
gi|397489097|ref|XP_003815573.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 isoform 1
[Pan paniscus]
gi|426337836|ref|XP_004032901.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 isoform 1
[Gorilla gorilla gorilla]
gi|51338779|sp|P51991.2|ROA3_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein A3;
Short=hnRNP A3
gi|34327775|gb|AAQ63629.1| heterogeneous nuclear ribonucleoprotein A3 [Homo sapiens]
gi|62822160|gb|AAY14709.1| unknown [Homo sapiens]
gi|85567495|gb|AAI12028.1| Heterogeneous nuclear ribonucleoprotein A3 [Homo sapiens]
gi|109730489|gb|AAI13471.1| HNRPA3 protein [Homo sapiens]
gi|119631469|gb|EAX11064.1| heterogeneous nuclear ribonucleoprotein A3, isoform CRA_b [Homo
sapiens]
gi|119631471|gb|EAX11066.1| heterogeneous nuclear ribonucleoprotein A3, isoform CRA_b [Homo
sapiens]
gi|410261478|gb|JAA18705.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261480|gb|JAA18706.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261482|gb|JAA18707.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261484|gb|JAA18708.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261486|gb|JAA18709.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261488|gb|JAA18710.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261490|gb|JAA18711.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261492|gb|JAA18712.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261494|gb|JAA18713.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410351651|gb|JAA42429.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410351653|gb|JAA42430.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
Length = 378
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 93 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 180
>gi|417399538|gb|JAA46770.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1 [Desmodus
rotundus]
Length = 354
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 21/189 (11%)
Query: 23 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVM 81
A + +F+G + +W + K+ LKDY + E ++ + G SRGF FV+
Sbjct: 89 AAAAQREEWKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 144
Query: 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 141
F K + D V E + +P R + VK +F+ G+ P
Sbjct: 145 F----------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTP 194
Query: 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNS 200
E +IR+ G+G+V I L + T KR+ + FI F E + I K++ + G S
Sbjct: 195 EEKIREYFGGFGEVESIELPMD-KTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLS 249
Query: 201 KVKLRARLS 209
K +++ +S
Sbjct: 250 KCEIKVAMS 258
>gi|402888739|ref|XP_003907708.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 [Papio
anubis]
Length = 378
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 93 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 180
>gi|332209432|ref|XP_003253815.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like
[Nomascus leucogenys]
Length = 378
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 93 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 180
>gi|329664164|ref|NP_001192358.1| heterogeneous nuclear ribonucleoprotein A3 [Bos taurus]
gi|426220819|ref|XP_004004609.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 [Ovis aries]
Length = 380
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 93 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 180
>gi|31559916|ref|NP_666242.2| heterogeneous nuclear ribonucleoprotein A3 isoform a [Mus musculus]
gi|37674277|ref|NP_932758.1| heterogeneous nuclear ribonucleoprotein A3 isoform a [Mus musculus]
gi|37693507|ref|NP_937765.1| heterogeneous nuclear ribonucleoprotein A3 isoform a [Rattus
norvegicus]
gi|162329577|ref|NP_001104764.1| heterogeneous nuclear ribonucleoprotein A3 isoform a [Rattus
norvegicus]
gi|311272700|ref|XP_003133549.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
1 [Sus scrofa]
gi|30316201|sp|Q8BG05.1|ROA3_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein A3;
Short=hnRNP A3
gi|51316556|sp|Q6URK4.1|ROA3_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein A3;
Short=hnRNP A3
gi|23274033|gb|AAH23908.1| Heterogeneous nuclear ribonucleoprotein A3 [Mus musculus]
gi|23468331|gb|AAH38364.1| Heterogeneous nuclear ribonucleoprotein A3 [Mus musculus]
gi|34327777|gb|AAQ63630.1| heterogeneous nuclear ribonucleoprotein A3 variant a [Rattus
norvegicus]
gi|40787633|gb|AAH64824.1| Heterogeneous nuclear ribonucleoprotein A3 [Mus musculus]
gi|51980308|gb|AAH81878.1| Heterogeneous nuclear ribonucleoprotein A3 [Rattus norvegicus]
gi|58801248|dbj|BAD89508.1| heterogeneous nuclear ribonucleoprotein A3 [Mus musculus]
gi|74143970|dbj|BAE41285.1| unnamed protein product [Mus musculus]
gi|148695241|gb|EDL27188.1| mCG1305, isoform CRA_b [Mus musculus]
gi|149022310|gb|EDL79204.1| rCG27231, isoform CRA_c [Rattus norvegicus]
gi|149022311|gb|EDL79205.1| rCG27231, isoform CRA_c [Rattus norvegicus]
gi|149022312|gb|EDL79206.1| rCG27231, isoform CRA_c [Rattus norvegicus]
gi|149022313|gb|EDL79207.1| rCG27231, isoform CRA_c [Rattus norvegicus]
Length = 379
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 93 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 180
>gi|403258685|ref|XP_003921883.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 [Saimiri
boliviensis boliviensis]
Length = 378
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 93 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 180
>gi|296220327|ref|XP_002756261.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like
[Callithrix jacchus]
Length = 304
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 93 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 180
>gi|157059865|dbj|BAF79678.1| heterogeneous nuclear ribonucleoprotein B0b [Rattus norvegicus]
Length = 313
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 19/199 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD---AM 89
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AM
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 79
Query: 90 AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRD 147
AA R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 80 AA--RPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRD 130
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 207
+ YG + I + + + K++ +GF+ F H+ V I + N++V+ +A
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD-PVDKIFLQKYHTINGHNAEVR-KAL 188
Query: 208 LSNPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 189 SRQEMQEVQSSRSGRGGNF 207
>gi|126347016|ref|XP_001368514.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like, partial
[Monodelphis domestica]
Length = 356
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 13 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 68
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 69 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 121
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 122 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 156
>gi|38328278|gb|AAH62198.1| Hnrpa3 protein [Mus musculus]
Length = 318
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 93 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 180
>gi|134083605|emb|CAL00520.1| unnamed protein product [Aspergillus niger]
Length = 381
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 89/180 (49%), Gaps = 9/180 (5%)
Query: 15 KQICGKRCGT-APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGL 73
KQ+ +R P +T+F+GN+ T+E +K+ ++ YGV VE + LV D + G+
Sbjct: 179 KQVEARRRRLQEPPTPKETVFIGNVFYDVTREDLKKAMEKYGV--VEKVVLVLD--NRGI 234
Query: 74 SRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFL 133
S+G+ +V F D++ A +R + R V V FA+ ++ A +T+++
Sbjct: 235 SKGYGYVQF----DSIDAAQRAVDALNMRLFEGRRVTVQFAQNNVYHRRQLNAPTRTLYI 290
Query: 134 DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
+P + + + K +V+ I +A + T + + + +F + +A A + + NK
Sbjct: 291 GNLPFEMTDRDLNELFKDVQNVVDIRVAVDRRTGQARGFAHAEFVSTSSAKAAMAILENK 350
>gi|322780793|gb|EFZ10022.1| hypothetical protein SINV_02126 [Solenopsis invicta]
Length = 381
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 7/174 (4%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G R G S DN LF G + TK ++L ++G+ +I + + Q+ L+RGF
Sbjct: 112 GHRIGVVKSMDNCRLFFGGVPKNKTKLEFLEELTKI-LDGIVDIYVYPNAQNRSLNRGFI 170
Query: 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP 138
FV F H A A ++L V+ E V A EP D +IM V +F+ +
Sbjct: 171 FVEFRDHRAAAMARRKLIPGKVMLWDHEIAVDWADPEPGDPVDEDIMETVTALFVRNLSI 230
Query: 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 192
+ ++++ I + +V + L K + FI + + EAA ++ +
Sbjct: 231 DMPQQKVKEIIYRHTNVPILKL------KKINHFAFIHYESREAAQTVMDIMQK 278
>gi|195029531|ref|XP_001987626.1| GH22019 [Drosophila grimshawi]
gi|193903626|gb|EDW02493.1| GH22019 [Drosophila grimshawi]
Length = 304
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+++ N+ + +A+ + +G + N N+ D EG SRG+ FV F A AA
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFG--NILNCNVAKD--EEGNSRGYGFVHFDSEEAARAA- 166
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
++K + + + ++ V F P R+ + E H K +++ + + E +R+ + Y
Sbjct: 167 --IEKVNGMLCNNQKVHVVKFI-PRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPY 223
Query: 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
G + L + R+ +GF+ F ++A+A + ++ K+ D
Sbjct: 224 GRITSHKLMLDEEGRSRR-FGFVAFENPQSALAAVIGLHGKQLGD 267
>gi|196005657|ref|XP_002112695.1| hypothetical protein TRIADDRAFT_2319 [Trichoplax adhaerens]
gi|190584736|gb|EDV24805.1| hypothetical protein TRIADDRAFT_2319, partial [Trichoplax
adhaerens]
Length = 288
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 12/179 (6%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
S N LF+ I KE I K +G+ + + D + RGFAF+ + H
Sbjct: 112 STPNVRLFISPIPKYMNKEEIYNKFSKLS-DGLTEVIVYPDPDAKDKIRGFAFLEYVDHK 170
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH-VKTVFLDGVPPHWKENQI 145
A A ++L V + + V +AE +EP ++ + VK V+ + H E+ +
Sbjct: 171 AATYARRKLITDTVSLSG--KVINVEWAESSKEPKDHVVGNKVKEVYCGNIAEHITEDTL 228
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204
YG + RI K DY FI F++ E+A+ I + + V+L
Sbjct: 229 NTAFLQYGSIERI--------KKLHDYAFICFASRESALKAIEGVRGTVINGCKVDVQL 279
>gi|186511881|ref|NP_193363.4| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
gi|332658326|gb|AEE83726.1| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
Length = 533
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 15/237 (6%)
Query: 19 GKRCGTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
G GT S+ + T LFVG++ T T+E I+ + +G V + L+ D + G +G
Sbjct: 106 GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHG--NVLEVALIKD-KRTGQQQG 162
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FV ++ DA A + L + V+V +A+ RE I +F+ +
Sbjct: 163 CCFVKYATSKDADRAIRALHN-QITLPGGTGPVQVRYADGERE---RIGTLEFKLFVGSL 218
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E ++ + +G V + L R+ R GF+ +S+ E A+A I+ +N
Sbjct: 219 NKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSR-GCGFVKYSSKETAMAAIDGLNGTYTM 277
Query: 197 DG-NSKVKLR-ARLSNPMP---KTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGH 248
G N + +R A P P + A G+ G R R S +G SG H
Sbjct: 278 RGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSGPRFQASGPRPTSNFGDSSGDVSH 334
>gi|157265559|ref|NP_001098083.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Rattus norvegicus]
gi|224493240|sp|A7VJC2.1|ROA2_RAT RecName: Full=Heterogeneous nuclear ribonucleoproteins A2/B1;
Short=hnRNP A2/B1
gi|157059861|dbj|BAF79676.1| heterogeneous nuclear ribonucleoprotein B1 [Rattus norvegicus]
Length = 353
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 79
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 80 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 132
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ V I + N++V+ +A
Sbjct: 133 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD-PVDKIFLQKYHTINGHNAEVR-KALSR 190
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 191 QEMQEVQSSRSGRGGNF 207
>gi|194745069|ref|XP_001955015.1| GF18563 [Drosophila ananassae]
gi|190628052|gb|EDV43576.1| GF18563 [Drosophila ananassae]
Length = 474
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 11/157 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E +K +G V ++ ++ D + SRGF F+ ++ + M
Sbjct: 38 LFIGGLAPYTTEEGLKVFYGQWG--KVVDVVVMRDATTK-RSRGFGFITYTKSL--MVDK 92
Query: 93 KRLQKPDVVFGHPERTV--KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
+ +P V+ G +TV K A P RE E VK +F+ G+ + E +R+
Sbjct: 93 AQENRPHVIDG---KTVEAKRALPRPERE-SRETNISVKKLFVGGLKDNHDEECLREYFM 148
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
+G+V+ + L + +T KR+ + FI+F ++A I
Sbjct: 149 QFGNVVSVKLLTDKTTGKRRGFAFIEFDDYDAVDKAI 185
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 22/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFG-----NILSCKVAQDEHGNSKGYGFVHYETDEAAQQA 203
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L + V GH P++ + F E + A+ +++ V P +++
Sbjct: 204 IKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE--------MKANFTNIYVKNVNPEASDDE 255
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R+ + YG++ LAR+ K + +GF++++THE+A ++ +N K+F
Sbjct: 256 FRELFERYGEITSSSLARDQD-GKSRGFGFVNYTTHESAYKAVDELNGKDF 305
>gi|348580545|ref|XP_003476039.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like [Cavia
porcellus]
Length = 355
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 15 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 70
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R + RE + AH VK +F+ G+ +E +RD
Sbjct: 71 MCARPHKVDGRVVEPKRAIS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 158
>gi|30693595|ref|NP_566958.3| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314769|ref|NP_001030841.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|17979394|gb|AAL49922.1| unknown protein [Arabidopsis thaliana]
gi|22136722|gb|AAM91680.1| unknown protein [Arabidopsis thaliana]
gi|332645382|gb|AEE78903.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645383|gb|AEE78904.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 253
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 17/176 (9%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 86
SE +++GNI T T E + + ++++G VE + ++ D ++ G SR F F
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHG--AVEKVQVMYD-KYSGRSRRFGFATMKSVE 128
Query: 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAE-PL-REPDPEIMAHVKTVFLDG--------V 136
DA A ++L + V G R +KV E P+ PD ++ + F+D +
Sbjct: 129 DANAVVEKLNG-NTVEG---REIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNL 184
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 192
+ + + G V+ ++R T+K +GF+ FS+ E A I A+NN
Sbjct: 185 AKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNN 240
>gi|28574145|ref|NP_788039.1| bruno-2, isoform D [Drosophila melanogaster]
gi|442627591|ref|NP_001260410.1| bruno-2, isoform K [Drosophila melanogaster]
gi|28380348|gb|AAO41184.1| bruno-2, isoform D [Drosophila melanogaster]
gi|440213740|gb|AGB92945.1| bruno-2, isoform K [Drosophila melanogaster]
Length = 737
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 16/177 (9%)
Query: 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH 85
P DN +FVG I TW + ++Q + +G V +N++ D + +SRG FV +
Sbjct: 290 PDADNIKMFVGQIPKTWDETRLRQMFEQFG--PVHTLNVLRD-KVTSISRGCCFVTYYTR 346
Query: 86 VDAMAAYKRLQKPDVVFG--HPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
A+ A L + G HP + +K A +E E + +F+ + + E
Sbjct: 347 KAALRAQDALHNIKTLDGMHHPIQ-MKPADSENRNE---------RKLFVGMLNKKYTEA 396
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 200
+R G+G + + R+ + + K F+ F+T + A+ I A++ + +G S
Sbjct: 397 DVRQLFTGHGTIEECTVLRDQA-GQSKGCAFVTFATKQNAIGAIKALHQSQTMEGCS 452
>gi|74004700|ref|XP_862045.1| PREDICTED: uncharacterized protein LOC608074 isoform 11 [Canis
lupus familiaris]
gi|410968906|ref|XP_003990940.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 isoform 2
[Felis catus]
Length = 356
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 15 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 70
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 71 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 158
>gi|157277969|ref|NP_444493.1| heterogeneous nuclear ribonucleoprotein A3 isoform c [Mus musculus]
gi|162329579|ref|NP_001104765.1| heterogeneous nuclear ribonucleoprotein A3 isoform b [Rattus
norvegicus]
gi|335303045|ref|XP_003359613.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
2 [Sus scrofa]
gi|25991929|gb|AAN76992.1|AF463524_1 ribonucleoprotein heterogeneous nuclear ribonucleoprotein A3 [Mus
musculus]
gi|23274114|gb|AAH23828.1| Hnrpa3 protein [Mus musculus]
gi|34327779|gb|AAQ63631.1| heterogeneous nuclear ribonucleoprotein A3 variant b [Rattus
norvegicus]
gi|111599310|gb|AAI16251.1| Hnrpa3 protein [Mus musculus]
gi|111599547|gb|AAI16252.1| Hnrpa3 protein [Mus musculus]
gi|148695243|gb|EDL27190.1| mCG1305, isoform CRA_d [Mus musculus]
gi|148695244|gb|EDL27191.1| mCG1305, isoform CRA_d [Mus musculus]
gi|148703315|gb|EDL35262.1| mCG48756 [Mus musculus]
gi|149022302|gb|EDL79196.1| rCG27231, isoform CRA_a [Rattus norvegicus]
gi|149022303|gb|EDL79197.1| rCG27231, isoform CRA_a [Rattus norvegicus]
gi|149022304|gb|EDL79198.1| rCG27231, isoform CRA_a [Rattus norvegicus]
gi|149022305|gb|EDL79199.1| rCG27231, isoform CRA_a [Rattus norvegicus]
gi|187957410|gb|AAI58039.1| Heterogeneous nuclear ribonucleoprotein A3 [Mus musculus]
gi|187957412|gb|AAI57920.1| Heterogeneous nuclear ribonucleoprotein A3 [Mus musculus]
Length = 357
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 15 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 70
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 71 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 158
>gi|148695240|gb|EDL27187.1| mCG1305, isoform CRA_a [Mus musculus]
Length = 351
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 15 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 70
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 71 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 158
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.141 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,507,731,630
Number of Sequences: 23463169
Number of extensions: 406309376
Number of successful extensions: 883701
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2196
Number of HSP's successfully gapped in prelim test: 6698
Number of HSP's that attempted gapping in prelim test: 861638
Number of HSP's gapped (non-prelim): 20775
length of query: 450
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 304
effective length of database: 8,933,572,693
effective search space: 2715806098672
effective search space used: 2715806098672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)