BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013047
(450 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 140 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 198
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 199 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 255
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 256 ANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 307
Query: 197 DGNSKV 202
N ++
Sbjct: 308 GENIEI 313
Score = 32.3 bits (72), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ +P E+++ + G + + L + T + Y F+ F T EAA +
Sbjct: 74 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 133
Query: 191 NNKEFSDG 198
NN E G
Sbjct: 134 NNHEIRSG 141
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR
PE=1 SV=1
Length = 633
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 292
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 293 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 349
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 350 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
GK G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF
Sbjct: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGF 288
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 289 CFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVKVLFVRNL 345
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E + +G + R+ K KDY FI F + AV + +N K+
Sbjct: 346 ANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 197 DGNSKV 202
N ++
Sbjct: 398 GENIEI 403
>sp|Q0P4R6|RBM46_XENTR Probable RNA-binding protein 46 OS=Xenopus tropicalis GN=rbm46 PE=2
SV=1
Length = 534
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 107/216 (49%), Gaps = 20/216 (9%)
Query: 6 LIYILIFPLKQIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 64
L+ I + +IC GK G S DN LF+G+I KE I +++K EGV ++ +
Sbjct: 115 LLAIRMLNNYEICQGKFIGVCVSLDNCRLFIGSIPQEKRKEEILEEMKKV-TEGVMDVIV 173
Query: 65 VSDIQHEGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE 123
+ +RGFAFVM+ H AMA K + P ++GH T+KVA+A P +E D E
Sbjct: 174 YPSATDKTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGH---TIKVAWASPEKEVDEE 230
Query: 124 IMAHVKTVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHE 181
M VK +++ + E I+ + Y G V R+ K +DY F+ F +
Sbjct: 231 TMQKVKVLYVRNLMMSTTEETIKAEFNRYKPGVVERV--------KKIRDYAFVHFFRRD 282
Query: 182 AAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQA 217
A+A ++ +N + DG ++ L+ P+ K A
Sbjct: 283 YAIAAMSVMNGR-LIDG---ARIEVTLAKPVNKEAA 314
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 16/118 (13%)
Query: 68 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH 127
++ G +RG+AFVM++ +A+ A + L ++ G + + V + + +
Sbjct: 94 MEFSGENRGYAFVMYTNKEEALLAIRMLNNYEICQG---KFIGVCVS----------LDN 140
Query: 128 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKD--YGFIDFSTHEAA 183
+ +F+ +P ++ +I +++K + + V+ +T K K+ + F+ + +H AA
Sbjct: 141 CR-LFIGSIPQEKRKEEILEEMKKVTEGVMDVIVYPSATDKTKNRGFAFVMYESHRAA 197
>sp|Q5R9H4|A1CF_PONAB APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1
Length = 587
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 126/303 (41%), Gaps = 49/303 (16%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF 255
DG+ + L+ P+ K ++ RY RG+G R
Sbjct: 292 -DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG------GRGTM 322
Query: 256 QRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGYNAPS-RAA 310
+G Y G+ + ++ +G + Y F +G S R APS R A
Sbjct: 323 LQGEYTYSLGQVYDPTTTYLGAPVFYAPQAYAAIPSLHFPATKGHLSNRAIIRAPSVRGA 382
Query: 311 AGA 313
AG
Sbjct: 383 AGV 385
Score = 36.6 bits (83), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 22/163 (13%)
Query: 24 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 83
AP E +F+G + ++ + + G + + ++ D G +RG+AFV FS
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIG--KIYEMRMMMDFN--GNNRGYAFVTFS 104
Query: 84 CHVDAMAAYKRLQKPDVVFGHPERTVKV-AFAEPLREPDPEIMAHVKTVFLDGVPPHWKE 142
++A A K+L ++ G R + V A + R +F+ G+P K
Sbjct: 105 NKLEAKNAIKQLNNYEIRNG---RLLGVCASVDNCR------------LFVGGIPKTKKR 149
Query: 143 NQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+I ++K G V IV K + + F+++ +H AA
Sbjct: 150 EEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAA 192
>sp|Q8TBY0|RBM46_HUMAN Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1
Length = 533
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 16/118 (13%)
Query: 68 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH 127
++ G +RG+AFVM++ +A A + L ++ P + + V + + +
Sbjct: 94 MEFSGENRGYAFVMYTTKEEAQLAIRILNNYEI---RPGKFIGVCVS----------LDN 140
Query: 128 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKD--YGFIDFSTHEAA 183
+ +F+ +P K+ +I D++K + + V+ +T K K+ + F+++ +H AA
Sbjct: 141 CR-LFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAA 197
>sp|Q9NQ94|A1CF_HUMAN APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1
Length = 594
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 94/204 (46%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K L ++GH + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 22/162 (13%)
Query: 25 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC 84
AP E +F+G + ++ + + G + + ++ D G +RG+AFV FS
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIG--KIYEMRMMMDFN--GNNRGYAFVTFSN 105
Query: 85 HVDAMAAYKRLQKPDVVFGHPERTVKV-AFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
V+A A K+L ++ G R + V A + R +F+ G+P K
Sbjct: 106 KVEAKNAIKQLNNYEIRNG---RLLGVCASVDNCR------------LFVGGIPKTKKRE 150
Query: 144 QIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+I ++K G V IV K + + F+++ +H AA
Sbjct: 151 EILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAA 192
>sp|Q4R2Z0|RBM46_MACFA Probable RNA-binding protein 46 OS=Macaca fascicularis GN=RBM46
PE=2 SV=2
Length = 485
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 16/118 (13%)
Query: 68 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH 127
++ G +RG+AFVM++ +A A + L ++ P + + V + + +
Sbjct: 94 MEFSGENRGYAFVMYTTKEEAQLAIRILNNYEI---RPGKFIGVCVS----------LDN 140
Query: 128 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKD--YGFIDFSTHEAA 183
+ +F+ +P K+ +I D++K + + V+ +T K K+ + F+++ +H AA
Sbjct: 141 CR-LFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAA 197
>sp|P86049|RBM46_MOUSE Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1
Length = 533
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G I KE I ++K EGV ++ + + +RGFA
Sbjct: 129 GKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFA 187
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 188 FVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLM 244
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K
Sbjct: 245 ISTTEETIKAEFSKFKPGAVERV--------KKLRDYAFVHFFHREDAVAAMSVMNGKCI 296
Query: 196 SDGNSKVKLRARLSNPMPKTQAVKGGMSG 224
DG S + L+ P+ K + ++G
Sbjct: 297 -DGAS---IEVTLAKPVNKENTWRQHLNG 321
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 16/118 (13%)
Query: 68 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH 127
++ G +RG+AFVM++ +A A + L ++ P + + V + + +
Sbjct: 94 MEFSGENRGYAFVMYTTKEEAQLAIRILNNYEI---RPGKFIGVCVS----------LDN 140
Query: 128 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKD--YGFIDFSTHEAA 183
+ +F+ +P K+ +I D++K + + V+ +T K K+ + F+++ +H AA
Sbjct: 141 CR-LFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAA 197
>sp|Q5YD48|A1CF_MOUSE APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=2 SV=2
Length = 595
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 96/205 (46%), Gaps = 19/205 (9%)
Query: 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGF
Sbjct: 123 TGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGF 181
Query: 78 AFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
AFV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 182 AFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNL 238
Query: 137 PPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 239 MLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKV 290
Query: 195 FSDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 291 L-DGSP---IEVTLAKPVDKDSYVR 311
Score = 32.7 bits (73), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 22/160 (13%)
Query: 24 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 83
+ P E +F+G + ++ + + G + + L+ D G +RG+AFV FS
Sbjct: 49 STPPERGCEIFIGKLPRDLFEDELIPLCEKIG--KIYEMRLMMDFN--GNNRGYAFVTFS 104
Query: 84 CHVDAMAAYKRLQKPDVVFGHPERTVKV-AFAEPLREPDPEIMAHVKTVFLDGVPPHWKE 142
+A A K+L ++ G R + V A + R +F+ G+P K
Sbjct: 105 NKQEAKNAIKQLNNYEIRTG---RLLGVCASVDNCR------------LFVGGIPKTKKR 149
Query: 143 NQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTH 180
+I ++K G V IV K + + F+++ +H
Sbjct: 150 EEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESH 189
>sp|Q9XSR3|RBM47_CANFA RNA-binding protein 47 OS=Canis familiaris GN=RBM47 PE=2 SV=1
Length = 592
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 98/199 (49%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 141 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 199
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 200 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 256
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N++N E +
Sbjct: 257 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVLAMNSLNGTEL-E 309
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 310 GSC---LEVTLAKPVDKEQ 325
Score = 33.1 bits (74), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 24/155 (15%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG I ++ + + G + + L+ D +G +RG+AFV + +A A
Sbjct: 75 VFVGKIPRDVYEDELVPVFEAVG--RIYELRLMMDF--DGKNRGYAFVTYCHKGEAKRAV 130
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQI--- 149
+ L ++ P R + V + +F+ G+P K +I ++I
Sbjct: 131 RELNNHEI---RPGRLLGVCCS-----------VDNCRLFIGGIPKMKKREEILEEIAKV 176
Query: 150 -KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+G DV IV A K + + F+++ +H AA
Sbjct: 177 TEGVLDV--IVYASAADKMKNRGFAFVEYESHRAA 209
>sp|Q923K9|A1CF_RAT APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1
SV=1
Length = 594
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 96/204 (47%), Gaps = 19/204 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LFVG I T +E I ++K EGV ++ + + +RGFA
Sbjct: 124 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFA 182
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A +RL + ++GHP + V +AEP E D + M+ VK +++ +
Sbjct: 183 FVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I + G V R+ K +DY F+ FS E AV + A+N K
Sbjct: 240 LSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL 291
Query: 196 SDGNSKVKLRARLSNPMPKTQAVK 219
DG+ + L+ P+ K V+
Sbjct: 292 -DGSP---IEVTLAKPVDKDSYVR 311
Score = 32.3 bits (72), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 22/160 (13%)
Query: 24 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 83
T P E +F+G + ++ + + G + + ++ D G +RG+AFV FS
Sbjct: 49 TTPPERGCEIFIGKLPRDLFEDELIPLCEKIG--KIYEMRMMMDFN--GNNRGYAFVTFS 104
Query: 84 CHVDAMAAYKRLQKPDVVFGHPERTVKV-AFAEPLREPDPEIMAHVKTVFLDGVPPHWKE 142
+A A K+L ++ G R + V A + R +F+ G+P K
Sbjct: 105 NKQEAKNAIKQLNNYEIRNG---RLLGVCASVDNCR------------LFVGGIPKTKKR 149
Query: 143 NQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTH 180
+I ++K G V IV K + + F+++ +H
Sbjct: 150 EEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESH 189
>sp|Q08BH5|RBM46_DANRE Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46 PE=2 SV=1
Length = 510
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 15/189 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
GK G S DN LF+G+I KE I++++ EGV ++ + +RGFA
Sbjct: 113 GKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKV-TEGVMDVIVYPSAVDRMKNRGFA 171
Query: 79 FVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H AMA K + ++GH T++V +AEP +E D E M V+ +++ +
Sbjct: 172 FVEYESHKAAAMARRKLIPGTFQLWGH---TIQVDWAEPEKELDEETMQRVRVLYVRNLM 228
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E +R + G V R+ K DY FI F E A+ + ++N K
Sbjct: 229 LSTTEETLRSEFSQLKPGSVERV--------KKLTDYAFIHFYNREDALTALESMNGKVI 280
Query: 196 SDGNSKVKL 204
+V L
Sbjct: 281 DGSPIEVTL 289
Score = 32.7 bits (73), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 20/120 (16%)
Query: 68 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH 127
++ G +RG+AFVM++ A A + L ++ P + + V + + +
Sbjct: 78 MEFSGENRGYAFVMYTTREKAQRAIQLLDNYEI---RPGKFIGVCVS----------LDN 124
Query: 128 VKTVFLDGVPPHWKENQIRDQI----KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ +F+ +P K+ +I++++ +G DV IV + K + + F+++ +H+AA
Sbjct: 125 CR-LFIGSIPKDKKKEEIQEEMMKVTEGVMDV--IVYPSAVDRMKNRGFAFVEYESHKAA 181
>sp|Q91WT8|RBM47_MOUSE RNA-binding protein 47 OS=Mus musculus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 21/226 (9%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I + I +++ EGV N+ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMQTVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ------AVKGGMSGGFRIGHGSSRTFS 237
G+ L L+ P+ K Q A KGG + S +S
Sbjct: 308 GSC---LEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYS 350
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 20/153 (13%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG I ++ + + G + + L+ D +G +RG+AFVM+ +A A
Sbjct: 73 VFVGKIPRDVYEDELVPVFETVG--RIYELRLMMDF--DGKNRGYAFVMYCHKHEAKRAV 128
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+ L ++ P R + V + +F+ G+P K +I ++I
Sbjct: 129 RELNNYEI---RPGRLLGVCCS-----------VDNCRLFIGGIPKMKKRGEILEEIAKV 174
Query: 153 --GDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
G + IV A K + + F+++ +H AA
Sbjct: 175 TEGVLNVIVYASAADKMKNRGFAFVEYESHRAA 207
>sp|Q5R5P4|RBM47_PONAB RNA-binding protein 47 OS=Pongo abelii GN=RBM47 PE=2 SV=2
Length = 593
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 24/155 (15%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG I ++ + + G + + L+ D +G +RG+AFVM+ +A A
Sbjct: 73 VFVGKIPRDVYEDELVPVFEAVG--RIYELRLMMDF--DGKNRGYAFVMYCHKHEAKRAV 128
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQI--- 149
+ L ++ P R + V + +F+ G+P K +I ++I
Sbjct: 129 RELNNYEI---RPGRLLGVCCS-----------VDNCRLFIGGIPKMKKREEILEEIAKV 174
Query: 150 -KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+G DV IV A K + + F+++ +H AA
Sbjct: 175 TEGVLDV--IVYASAADKMKNRGFAFVEYESHRAA 207
>sp|A0AV96|RBM47_HUMAN RNA-binding protein 47 OS=Homo sapiens GN=RBM47 PE=1 SV=2
Length = 593
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I +E I +++ EGV ++ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197
E+ I+ K +G + R K +DY F+ F++ E AV +N +N E +
Sbjct: 255 IETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-E 307
Query: 198 GNSKVKLRARLSNPMPKTQ 216
G+ L L+ P+ K Q
Sbjct: 308 GSC---LEVTLAKPVDKEQ 323
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 24/155 (15%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG I ++ + + G + + L+ D +G +RG+AFVM+ +A A
Sbjct: 73 VFVGKIPRDVYEDELVPVFEAVG--RIYELRLMMDF--DGKNRGYAFVMYCHKHEAKRAV 128
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQI--- 149
+ L ++ P R + V + +F+ G+P K +I ++I
Sbjct: 129 RELNNYEI---RPGRLLGVCCS-----------VDNCRLFIGGIPKMKKREEILEEIAKV 174
Query: 150 -KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+G DV IV A K + + F+++ +H AA
Sbjct: 175 TEGVLDV--IVYASAADKMKNRGFAFVEYESHRAA 207
>sp|Q66H68|RBM47_RAT RNA-binding protein 47 OS=Rattus norvegicus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 25/228 (10%)
Query: 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78
G+ G S DN LF+G I + I +++ EGV N+ + + + +RGFA
Sbjct: 139 GRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAADKMKNRGFA 197
Query: 79 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137
FV + H A A ++L + ++GH + V +AEP + D ++M VK +++ +
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMQTVKILYVRNLM 254
Query: 138 PHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
E I+ + G V R+ K +DY F+ F++ E AV +N +N E
Sbjct: 255 IETTEETIKRSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNNLNGTEL 306
Query: 196 SDGNSKVKLRARLSNPMPKTQ------AVKGGMSGGFRIGHGSSRTFS 237
+G+ L L+ P+ K Q A KGG + S +S
Sbjct: 307 -EGSC---LEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYS 350
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 20/153 (13%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG I ++ + + G + + L+ D +G +RG+AFVM+ +A A
Sbjct: 73 VFVGKIPRDVYEDELVPVFETVG--RIYELRLMMDF--DGKNRGYAFVMYCHKHEAKRAV 128
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152
+ L ++ P R + V + +F+ G+P K +I ++I
Sbjct: 129 RELNNYEI---RPGRLLGVCCS-----------VDNCRLFIGGIPKMKKRGEILEEIAKV 174
Query: 153 --GDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
G + IV A K + + F+++ +H AA
Sbjct: 175 TEGVLNVIVYASAADKMKNRGFAFVEYESHRAA 207
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 11/151 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS-CHVDAMAA 91
LF+G + T E++KQ + +G + ++ ++ D + + SRGF F+ +S H+ A
Sbjct: 19 LFIGGLDYRTTDESLKQHFEQWG--EIVDVVVMKDPKTK-RSRGFGFITYSRAHMVDDAQ 75
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
R K D P+R V P E PE A VK +F+ G+ +EN +RD K
Sbjct: 76 NARPHKVDGRVVEPKRAV------PRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFK 129
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 181
YG V+ + + T K++ + F++F ++
Sbjct: 130 QYGTVVSAAIVVDKETRKKRGFAFVEFDDYD 160
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 34/61 (55%)
Query: 118 REPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 177
RE D HV+ +F+ G+ + ++ + +G+++ +V+ ++ T + + +GFI +
Sbjct: 6 RENDHGEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITY 65
Query: 178 S 178
S
Sbjct: 66 S 66
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 21/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFG-----NILSCKVAQDENGNSKGYGFVHYETDEAASQA 205
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L + V GH P++ + F E+ A+ +++ + P +++
Sbjct: 206 IKHVNGMLLNEKKVYVGHHIPKKDRQSKF--------DEMKANFTNIYVKNINPEVTDDE 257
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R + YGDV LAR+ T K + +GF++F++HE A + +N KEF
Sbjct: 258 FRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEF 308
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 22/199 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDA-M 89
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA M
Sbjct: 29 LFIGGLSFETTDDSLREHFEQWG--KLTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDASM 85
Query: 90 AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRD 147
+A R K D P+R V RE AH VK +F+ G+ +E +RD
Sbjct: 86 SA--RPHKVDGRVVEPKRAVS-------REDSARPGAHLTVKKIFVGGIKEDTEEYHLRD 136
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN-SKVKLRA 206
+GYG + I + + + K++ + F+ F H+ ++ I +++ N +++
Sbjct: 137 YFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDT----VDKIVVQKYHTINLHNCEVKK 192
Query: 207 RLSNPMPKTQAVKGGMSGG 225
LS +T + + G GG
Sbjct: 193 ALSKQEMQTASAQRGRGGG 211
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 19/170 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFG-----NILSCKVAQDEFGNSKGYGFVHYETAEAAQNA 199
Query: 92 YKR-----LQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQI 145
K L V GH A+ R+ E+ A+ V++ + E +
Sbjct: 200 IKHVNGMLLNDKKVFVGH-------HIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEF 252
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
RD + +G++ LAR+ + K + +GF++F++H+ A A + A+N+K+F
Sbjct: 253 RDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDF 302
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 259
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 259
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCHVDAMAA 91
+F+G + +W + K+ LKDY + + ++ + G SRGF FV+F
Sbjct: 97 MFIGGL--SW--DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF--------- 143
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 144 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 202
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLS 209
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 203 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMS 257
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 95/199 (47%), Gaps = 22/199 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDA-M 89
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA M
Sbjct: 29 LFIGGLSFETTDDSLREHFEQWGK--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDASM 85
Query: 90 AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRD 147
+A R K D P+R V RE AH VK +F+ G+ +E +RD
Sbjct: 86 SA--RPHKVDGRVVEPKRAVS-------REDSARPGAHLTVKKIFVGGIKEDTEEYHLRD 136
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS-KVKLRA 206
+ YG + I + + + K++ + F+ F H+ ++ I +++ N +++
Sbjct: 137 YSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDT----VDKIVVQKYHTINGHNCEVKK 192
Query: 207 RLSNPMPKTQAVKGGMSGG 225
LS +T + + G GG
Sbjct: 193 ALSKQEMQTASAQRGRGGG 211
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 14/167 (8%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 155 VFIKNLDVAIDNKALHDTFAAFG-----NILSCKVAQDENGNSKGYGFVHYETDEAAAQA 209
Query: 92 YKRLQKPDVVFGHPERTVKVAFAEPLREPDP---EIMAHVKTVFLDGVPPHWKENQIRDQ 148
K + +++ E+ V V + P ++ E+ A+ +++ + + + RD
Sbjct: 210 IKHVN--NMLLN--EKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDL 265
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
YGDV LAR+ S K + +GF++F+THE A + +N KEF
Sbjct: 266 FAKYGDVTSSSLARD-SEGKSRGFGFVNFTTHECAAKAVEELNGKEF 311
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 67
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 68 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 178
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 179 QEMQEVQSSRSGRGGNF 195
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 92/197 (46%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 79
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 80 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 132
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ V I + + N++V+ +A
Sbjct: 133 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD-PVDKIVLQKHHTINGHNAEVR-KALSR 190
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 191 QEMQEVQSSRSGRGGNF 207
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 22/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ + +A+ +G NI Q E G+S+G+ FV + A A
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFG-----NILSCKVAQDEFGVSKGYGFVHYETAEAANNA 186
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L V GH ++ + F E + A+ +++ + P ++ +
Sbjct: 187 IKHVNGMLLNDKKVFVGHHISKKDRQSKFEE--------MKANFTNIYIKNIDPEVEDEE 238
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R + +G++ L+R+ S K + +GF++FSTHE+A A + +N+KE
Sbjct: 239 FRKLFEKFGEITSATLSRD-SEGKSRGFGFVNFSTHESAQAAVEEMNDKEV 288
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 11 LFIGGLSFQTTEESLRNYYEQWGK--LTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 67
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 68 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 121 AEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 178
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 179 QEMQEVQSSRSGRGGNF 195
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 79
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 80 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 132
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 133 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 190
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 191 QEMQEVQSSRSGRGGNF 207
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 79
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 80 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 132
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ + + +G++ +A
Sbjct: 133 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHNAEVRKALSR 190
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 191 QEMQEVQSSRSGRGGNF 207
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 93 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 180
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 93 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 180
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEEVDA-A 92
Query: 91 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 148
R K D P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 93 MCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 149 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183
+ YG + I + + + K++ + F+ F H+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 180
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+F+ N+ + +A+ +G + ++ G SRGFAFV +S A AA
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFG----DILSCKVGTDENGKSRGFAFVHYSTGEAADAAI 191
Query: 93 KR-----LQKPDVVFGH----PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
K L V GH ER KV E+ A V++ V +
Sbjct: 192 KAVNGMLLNDKKVYVGHHVGKKERLSKVE----------ELRAQFTNVYIKNVDLEVTDA 241
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
+ D +K +G I + L+R+ K +GF+++ HE+A ++ +N KE +
Sbjct: 242 EFEDLVKPFGPTISVALSRD-EKGVSKGFGFVNYENHESARKAVDELNEKEVN 293
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/184 (18%), Positives = 77/184 (41%), Gaps = 14/184 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+++ N+ T + +K +G I++ +G+S+GF FV + H A A
Sbjct: 229 VYIKNVDLEVTDAEFEDLVKPFG----PTISVALSRDEKGVSKGFGFVNYENHESARKAV 284
Query: 93 KRLQKPDV---------VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
L + +V ER ++ + + + E + +++ + W ++
Sbjct: 285 DELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDD 344
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203
++R + + +G + + R+ S R +GF+ +S+ + A ++ +N K V
Sbjct: 345 RLRAEFEAFGTITSSKVMRDDSGVSR-GFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVA 403
Query: 204 LRAR 207
L R
Sbjct: 404 LAQR 407
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ + + D +GD++ + + K + + F+ +ST EAA A I A+
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAAIKAV 194
Query: 191 NNKEFSD 197
N +D
Sbjct: 195 NGMLLND 201
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+F+ N+ + +A+ +G + ++ G SRGFAFV +S A AA
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFG----DILSCKVGTDENGKSRGFAFVHYSTGEAADAAI 191
Query: 93 KR-----LQKPDVVFGH----PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
K L V GH ER KV E+ A V++ V +
Sbjct: 192 KAVNGMLLNDKKVYVGHHVGKKERLSKVE----------ELRAQFTNVYIKNVDLEVTDA 241
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
+ D +K +G I + L+R+ K +GF+++ HE+A ++ +N KE +
Sbjct: 242 EFEDLVKPFGPTISVALSRD-EKGVSKGFGFVNYENHESARKAVDELNEKEVN 293
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/184 (18%), Positives = 77/184 (41%), Gaps = 14/184 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+++ N+ T + +K +G I++ +G+S+GF FV + H A A
Sbjct: 229 VYIKNVDLEVTDAEFEDLVKPFG----PTISVALSRDEKGVSKGFGFVNYENHESARKAV 284
Query: 93 KRLQKPDV---------VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
L + +V ER ++ + + + E + +++ + W ++
Sbjct: 285 DELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDD 344
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203
++R + + +G + + R+ S R +GF+ +S+ + A ++ +N K V
Sbjct: 345 RLRAEFEAFGTITSSKVMRDDSGVSR-GFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVA 403
Query: 204 LRAR 207
L R
Sbjct: 404 LAQR 407
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190
+F+ + + D +GD++ + + K + + F+ +ST EAA A I A+
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAAIKAV 194
Query: 191 NNKEFSD 197
N +D
Sbjct: 195 NGMLLND 201
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 15/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM 79
Query: 93 K-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRDQI 149
R D P+R V RE + AHV K +F+ G+ +E+ +RD
Sbjct: 80 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 132
Query: 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS 209
+ YG + I + + + K++ +GF+ F H+ V I + N++V+ +A
Sbjct: 133 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD-PVDKIFLQKYHTINGHNAEVR-KALSR 190
Query: 210 NPMPKTQAVKGGMSGGF 226
M + Q+ + G G F
Sbjct: 191 QEMQEVQSSRSGRGGNF 207
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 25/209 (11%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 90
LF+G + T+E+++ + +G + + ++ D + SRGF FV FSC VDA
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGT--LTDCVVMRDPASK-RSRGFGFVTFSCMNEVDAAM 67
Query: 91 AYKRLQKPDVVFG---HPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQI 145
A +P + G P+R V RE + AH VK +F+ G+ +E+ +
Sbjct: 68 A----TRPHTIDGRVVEPKRAV-------AREESAKPGAHVTVKKLFVGGIKEDTEEHHL 116
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205
R+ + YG + I + + + K++ + F+ F H+ + + +G++ +
Sbjct: 117 REYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIV--LQKYHTINGHNAEVRK 174
Query: 206 ARLSNPMPKTQAVKGGMSGGFRIGHGSSR 234
A M Q + G F G G SR
Sbjct: 175 ALSKQEMQDVQNTRNNRGGNF--GFGDSR 201
>sp|O04425|FCA_ARATH Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA
PE=1 SV=2
Length = 747
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 15/237 (6%)
Query: 19 GKRCGTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76
G GT S+ + T LFVG++ T T+E I+ + +G V + L+ D + G +G
Sbjct: 106 GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHG--NVLEVALIKD-KRTGQQQG 162
Query: 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 136
FV ++ DA A + L + V+V +A+ RE I +F+ +
Sbjct: 163 CCFVKYATSKDADRAIRALHN-QITLPGGTGPVQVRYADGERE---RIGTLEFKLFVGSL 218
Query: 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196
E ++ + +G V + L R+ R GF+ +S+ E A+A I+ +N
Sbjct: 219 NKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSR-GCGFVKYSSKETAMAAIDGLNGTYTM 277
Query: 197 DG-NSKVKLR-ARLSNPMP---KTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGH 248
G N + +R A P P + A G+ G R R S +G SG H
Sbjct: 278 RGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSGPRFQASGPRPTSNFGDSSGDVSH 334
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 21/166 (12%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
+D +F+G + +K+ + + L +G V + + +D G SRGF FV+F D
Sbjct: 23 QDEGKMFIGGLSWDTSKKDLTEYLSRFGE--VVDCTIKTD-PVTGRSRGFGFVLFK---D 76
Query: 88 AMAAYKRLQ----KPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
A++ K L+ K D P+R A+ L+ +P K VF+ G+ P E
Sbjct: 77 AVSVDKVLETKEHKLDGKLIDPKR------AKALKGKEPP-----KKVFVGGLSPETTEE 125
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 189
QI+ G+G++ I L + T +R+ + F+ ++ E + +
Sbjct: 126 QIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLES 171
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 17/164 (10%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF--SCH 85
+D+ +F+G + +K+ + + L +G V + + +D G SRGF FV+F +
Sbjct: 145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGE--VVDCTIKTD-PVTGRSRGFGFVLFKDAAS 201
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
VD + K K D P+R + EP K VF+ G+ P E QI
Sbjct: 202 VDKVLELKE-HKLDGKLIDPKRAKALKGKEP-----------PKKVFVGGLSPDTSEEQI 249
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 189
++ +G++ I L + T +R+ + FI ++ E + +
Sbjct: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 93/207 (44%), Gaps = 21/207 (10%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E+++ + +G + + ++ D + SRGF FV FSC + AA
Sbjct: 11 LFIGGLSFETTEESLRNFYEQWGQ--LTDCVVMRDPASK-RSRGFGFVTFSCMNEVDAAM 67
Query: 93 KRLQKPDVVFG---HPERTVKVAFAEPLREPDPEIMAHV--KTVFLDGVPPHWKENQIRD 147
+P + G P+R V RE + AHV K +F+ G+ +E+ +R+
Sbjct: 68 S--ARPHTIDGRVVEPKRAV-------AREESAKPGAHVTVKKLFVGGIKEDTEEHHLRE 118
Query: 148 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 207
+ YG + + + + K++ +GF+ F+ H+ + + +G++ +A
Sbjct: 119 YFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIV--LQKYHTINGHNAEVRKAL 176
Query: 208 LSNPMPKTQAVKGGMSGGFRIGHGSSR 234
M Q + G F G G SR
Sbjct: 177 SKQEMQDVQNTRNNRGGNF--GFGDSR 201
>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=2
SV=1
Length = 471
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 94/197 (47%), Gaps = 14/197 (7%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
LF+G + T+E +K +G V ++ ++ D + SRGF F+ ++ + M
Sbjct: 34 LFIGGLAPYTTEENLKLFYGQWG--KVVDVVVMRDAATK-RSRGFGFITYTKSL--MVDR 88
Query: 93 KRLQKPDVVFGHPERTV--KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150
+ +P ++ G +TV K A P RE E VK +F+ G+ + E +R+
Sbjct: 89 AQENRPHIIDG---KTVEAKRALPRPERE-SRETNISVKKLFVGGLKDNHDEECLREYFL 144
Query: 151 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 210
+G+V+ + L + +T KR+ + F++F ++ A AI K+ + V ++ + N
Sbjct: 145 QFGNVVSVKLLTDKTTGKRRGFAFVEFDDYD---AVDKAILKKQHAIKYVHVDVKKSIYN 201
Query: 211 PMPKTQAVKGGMSGGFR 227
K + GG++ +
Sbjct: 202 LDKKEKQQPGGLANAIK 218
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 9/156 (5%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92
+FVG + + T + +++ +G + +I ++ D + SRGF FV FS + AA
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFG--EITDIIVMRDPTTK-RSRGFGFVTFSGKTEVDAAM 81
Query: 93 KRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151
K Q+P ++ G +TV A P + + E K +++ GV E+ + +
Sbjct: 82 K--QRPHIIDG---KTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTK 136
Query: 152 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187
YG V + + + +T K + +GF+ F H++ C+
Sbjct: 137 YGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 172
Score = 32.3 bits (72), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/52 (21%), Positives = 33/52 (63%)
Query: 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFS 178
+++ +F+ G+ + ++ +R+ +G++ I++ R+ +T + + +GF+ FS
Sbjct: 21 NLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFS 72
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 19/179 (10%)
Query: 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ-HEGLSRGFAFVMFSCH 85
S ++ TL + N+ + T+E ++ E E + Q +G S+G+AF+ F+
Sbjct: 482 SGESKTLVLSNLSYSATEETLQ--------EVFEKATFIKVPQNQQGKSKGYAFIEFASF 533
Query: 86 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
DA A K ++ RT+++ P P+ KT+F+ G+ E +
Sbjct: 534 EDAKEALNSCNKMEI----EGRTIRLELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETL 588
Query: 146 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204
++ +G +R + + T K +GF+DF++ E A A A+ + E DGN KV L
Sbjct: 589 KESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL 642
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 25 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC 84
A S+ + TLFV + T+E +K+ EG +V+D + G S+GF FV F+
Sbjct: 566 ARSQPSKTLFVKGLSEDTTEETLKESF-----EGSVRARIVTD-RETGSSKGFGFVDFNS 619
Query: 85 HVDAMAAYKRLQ 96
DA AA + ++
Sbjct: 620 EEDAKAAKEAME 631
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 21/166 (12%)
Query: 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 87
+D+ +F+G + +K+ + + L +G V + + +D G SRGF FV+F D
Sbjct: 27 QDDGKMFIGGLSWDTSKKDLTEYLSRFGE--VVDCTIKTD-PVTGRSRGFGFVLFK---D 80
Query: 88 AMAAYKRLQ----KPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 143
A + K L+ K D P+R + EP K VF+ G+ P E
Sbjct: 81 AASVEKVLELKEHKLDGKLIDPKRAKALKGKEP-----------PKKVFVGGLSPDTSEE 129
Query: 144 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 189
QI++ +G++ I L + T +R+ + FI ++ E + +
Sbjct: 130 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 175
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 9/166 (5%)
Query: 32 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 91
TLF+ N+ + T+E +K G I+ + LS GF FV + A A
Sbjct: 723 TLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 782
Query: 92 YKRLQKPDVVFGH------PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 145
K+LQ V GH ER K A ++ P+ K + + +P + +I
Sbjct: 783 LKQLQG-HTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSK-ILVRNIPFQANQREI 840
Query: 146 RDQIKGYGDVIRIVLARNMS-TAKRKDYGFIDFSTHEAAVACINAI 190
R+ +G++ + L + M+ T + +GF+DF T + A NA+
Sbjct: 841 RELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 886
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 22/171 (12%)
Query: 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAA 91
+F+ N+ +A+ +G NI Q E G S+G+ FV + A A
Sbjct: 150 IFIKNLDAAIDNKALHDTFAAFG-----NILSCKVAQDEHGNSKGYGFVHYETDEAASQA 204
Query: 92 YKR-----LQKPDVVFGH--PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 144
K L + V GH P++ + F E + A+ V++ + + +
Sbjct: 205 IKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE--------MKANFTNVYVKNINNEVTDEE 256
Query: 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195
R+ +G+V LAR+ K + +GF++F+THEAA ++ +N K+F
Sbjct: 257 FRELFAKFGEVTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAVDELNGKDF 306
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.141 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 201,601,336
Number of Sequences: 539616
Number of extensions: 9634319
Number of successful extensions: 22822
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 324
Number of HSP's that attempted gapping in prelim test: 21265
Number of HSP's gapped (non-prelim): 1414
length of query: 450
length of database: 191,569,459
effective HSP length: 121
effective length of query: 329
effective length of database: 126,275,923
effective search space: 41544778667
effective search space used: 41544778667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)