Query 013047
Match_columns 450
No_of_seqs 374 out of 3081
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 23:52:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 5.3E-36 1.1E-40 299.2 28.4 173 26-210 103-275 (346)
2 KOG0117 Heterogeneous nuclear 100.0 7.8E-33 1.7E-37 270.2 30.5 200 3-213 136-336 (506)
3 TIGR01648 hnRNP-R-Q heterogene 100.0 2E-30 4.3E-35 271.8 27.3 193 3-206 110-305 (578)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.3E-30 1.2E-34 258.8 23.5 200 3-207 56-348 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7.9E-30 1.7E-34 257.6 22.0 168 29-208 2-169 (352)
6 TIGR01645 half-pint poly-U bin 100.0 1.1E-29 2.3E-34 266.7 20.6 171 29-206 106-282 (612)
7 KOG0144 RNA-binding protein CU 100.0 3.1E-29 6.8E-34 243.9 14.0 172 28-208 32-204 (510)
8 TIGR01622 SF-CC1 splicing fact 100.0 3.7E-28 8E-33 254.0 21.8 172 27-206 86-264 (457)
9 KOG0148 Apoptosis-promoting RN 100.0 1.1E-27 2.4E-32 220.9 19.7 166 31-209 63-239 (321)
10 TIGR01628 PABP-1234 polyadenyl 100.0 1.8E-27 3.8E-32 255.0 22.4 197 5-206 142-362 (562)
11 TIGR01628 PABP-1234 polyadenyl 100.0 3.2E-27 7E-32 253.0 21.9 192 3-203 53-256 (562)
12 KOG0145 RNA-binding protein EL 99.9 2.8E-27 6E-32 216.8 15.1 171 27-209 38-208 (360)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.9E-25 4.1E-30 236.6 23.1 168 30-204 295-498 (509)
14 TIGR01648 hnRNP-R-Q heterogene 99.9 9.5E-26 2.1E-30 236.6 19.5 160 28-205 56-219 (578)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.4E-25 5.1E-30 235.8 21.1 168 27-206 172-373 (509)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 4.7E-25 1E-29 231.5 21.9 153 30-199 2-163 (481)
17 KOG0117 Heterogeneous nuclear 99.9 3.2E-25 7E-30 217.0 17.5 159 30-205 83-245 (506)
18 KOG0131 Splicing factor 3b, su 99.9 2.1E-25 4.5E-30 195.1 14.1 169 28-207 7-176 (203)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.1E-24 2.4E-29 228.7 21.4 168 29-210 274-478 (481)
20 KOG0145 RNA-binding protein EL 99.9 2.8E-24 6.1E-29 197.1 17.7 197 6-207 97-357 (360)
21 TIGR01622 SF-CC1 splicing fact 99.9 2.3E-23 5E-28 217.8 22.4 165 30-205 186-445 (457)
22 KOG0127 Nucleolar protein fibr 99.9 1.5E-23 3.3E-28 209.4 19.3 170 30-207 117-377 (678)
23 KOG0109 RNA-binding protein LA 99.9 1.9E-24 4.2E-29 201.3 11.6 151 31-211 3-153 (346)
24 KOG0127 Nucleolar protein fibr 99.9 1.8E-23 3.9E-28 208.9 15.7 170 31-208 6-196 (678)
25 KOG0144 RNA-binding protein CU 99.9 3.6E-23 7.7E-28 201.8 13.0 179 29-212 123-508 (510)
26 KOG0146 RNA-binding protein ET 99.9 3.5E-23 7.6E-28 190.6 10.4 173 29-206 18-363 (371)
27 KOG4205 RNA-binding protein mu 99.9 8.8E-22 1.9E-26 191.7 20.6 171 29-210 5-176 (311)
28 KOG0123 Polyadenylate-binding 99.9 1.2E-21 2.6E-26 197.1 17.5 188 4-202 49-240 (369)
29 KOG0124 Polypyrimidine tract-b 99.9 7.4E-22 1.6E-26 188.7 10.8 171 30-207 113-289 (544)
30 KOG0123 Polyadenylate-binding 99.9 1.4E-20 3.1E-25 189.3 17.5 149 31-205 2-150 (369)
31 KOG0110 RNA-binding protein (R 99.8 7.5E-21 1.6E-25 196.0 13.5 171 31-207 516-692 (725)
32 KOG0148 Apoptosis-promoting RN 99.8 7.2E-21 1.6E-25 175.9 11.4 138 27-206 3-140 (321)
33 TIGR01645 half-pint poly-U bin 99.8 2.9E-19 6.4E-24 188.2 22.8 106 3-115 160-282 (612)
34 KOG0105 Alternative splicing f 99.8 2.3E-19 4.9E-24 157.4 17.5 164 27-207 3-187 (241)
35 KOG0147 Transcriptional coacti 99.8 1.4E-20 3.1E-25 189.3 8.0 177 26-210 175-360 (549)
36 PLN03134 glycine-rich RNA-bind 99.8 3.1E-18 6.7E-23 150.8 14.2 87 119-205 25-111 (144)
37 KOG4211 Splicing factor hnRNP- 99.8 4E-18 8.7E-23 169.7 16.2 161 29-202 9-176 (510)
38 KOG0106 Alternative splicing f 99.7 2.3E-18 5E-23 158.2 7.3 149 31-202 2-165 (216)
39 KOG0147 Transcriptional coacti 99.7 1.4E-17 3.1E-22 167.8 11.8 162 32-205 280-525 (549)
40 PLN03134 glycine-rich RNA-bind 99.7 3.2E-17 7E-22 144.3 11.9 84 27-117 31-114 (144)
41 KOG4206 Spliceosomal protein s 99.7 1.8E-16 4E-21 144.4 15.8 153 29-196 8-209 (221)
42 KOG1548 Transcription elongati 99.7 1.3E-15 2.8E-20 145.8 17.2 164 29-204 133-348 (382)
43 KOG1457 RNA binding protein (c 99.7 7.2E-16 1.6E-20 139.3 14.4 167 23-196 27-274 (284)
44 KOG0124 Polypyrimidine tract-b 99.7 2E-15 4.3E-20 144.9 17.3 196 1-203 164-530 (544)
45 TIGR01659 sex-lethal sex-letha 99.7 5.1E-16 1.1E-20 155.5 13.5 109 4-117 161-275 (346)
46 KOG4212 RNA-binding protein hn 99.6 4E-15 8.8E-20 145.8 16.7 166 30-204 44-290 (608)
47 COG0724 RNA-binding proteins ( 99.6 1.3E-14 2.7E-19 139.2 14.8 151 30-187 115-284 (306)
48 KOG0110 RNA-binding protein (R 99.6 1.4E-14 3.1E-19 150.0 12.6 167 27-206 382-596 (725)
49 PF00076 RRM_1: RNA recognitio 99.6 1.3E-14 2.7E-19 111.0 9.0 70 33-110 1-70 (70)
50 KOG0149 Predicted RNA-binding 99.5 1.9E-14 4E-19 131.6 7.7 79 29-115 11-89 (247)
51 PF00076 RRM_1: RNA recognitio 99.5 4.6E-14 1E-18 107.9 8.7 69 131-200 1-69 (70)
52 KOG0107 Alternative splicing f 99.5 3.4E-14 7.4E-19 124.3 8.5 77 30-118 10-86 (195)
53 KOG0122 Translation initiation 99.5 5.1E-14 1.1E-18 129.2 9.4 82 29-117 188-269 (270)
54 KOG0121 Nuclear cap-binding pr 99.5 3.7E-14 8.1E-19 117.8 7.4 83 27-116 33-115 (153)
55 KOG0149 Predicted RNA-binding 99.5 8.6E-14 1.9E-18 127.3 9.0 84 127-211 11-94 (247)
56 KOG0107 Alternative splicing f 99.5 1.6E-12 3.5E-17 113.8 15.6 74 127-205 9-82 (195)
57 KOG4212 RNA-binding protein hn 99.5 1.4E-12 3E-17 128.2 16.5 71 129-204 537-607 (608)
58 KOG4211 Splicing factor hnRNP- 99.5 2.9E-12 6.2E-17 128.2 19.0 162 27-200 100-350 (510)
59 PF14259 RRM_6: RNA recognitio 99.5 2.6E-13 5.6E-18 104.3 8.7 70 33-110 1-70 (70)
60 KOG0125 Ataxin 2-binding prote 99.5 1.8E-13 4E-18 130.3 9.2 82 123-206 91-172 (376)
61 KOG0120 Splicing factor U2AF, 99.5 4.9E-13 1.1E-17 136.9 12.9 168 27-201 286-485 (500)
62 KOG0113 U1 small nuclear ribon 99.4 6.2E-13 1.3E-17 125.3 11.3 81 126-206 99-179 (335)
63 PF14259 RRM_6: RNA recognitio 99.4 6.7E-13 1.5E-17 101.9 9.0 69 131-200 1-69 (70)
64 PLN03120 nucleic acid binding 99.4 1.4E-12 3.1E-17 123.3 12.7 77 30-117 4-80 (260)
65 KOG0125 Ataxin 2-binding prote 99.4 6.5E-13 1.4E-17 126.5 9.0 81 29-118 95-175 (376)
66 KOG0113 U1 small nuclear ribon 99.4 1.4E-12 3E-17 123.0 10.9 81 28-115 99-179 (335)
67 KOG0105 Alternative splicing f 99.4 1E-12 2.2E-17 115.8 9.4 76 127-205 5-80 (241)
68 KOG0130 RNA-binding protein RB 99.4 4.3E-13 9.3E-18 112.4 6.6 82 27-115 69-150 (170)
69 KOG4207 Predicted splicing fac 99.4 5.3E-13 1.2E-17 119.6 7.6 80 127-206 12-91 (256)
70 KOG4207 Predicted splicing fac 99.4 5.1E-13 1.1E-17 119.7 6.3 80 29-115 12-91 (256)
71 KOG1190 Polypyrimidine tract-b 99.4 9.4E-12 2E-16 121.7 15.0 160 30-205 297-488 (492)
72 KOG0122 Translation initiation 99.4 1.3E-12 2.8E-17 120.1 8.4 79 127-205 188-266 (270)
73 KOG0121 Nuclear cap-binding pr 99.4 9.7E-13 2.1E-17 109.4 6.9 82 125-206 33-114 (153)
74 KOG1456 Heterogeneous nuclear 99.4 1.1E-10 2.3E-15 113.1 21.9 166 29-212 30-199 (494)
75 smart00362 RRM_2 RNA recogniti 99.4 3.4E-12 7.4E-17 96.7 9.2 71 32-111 1-71 (72)
76 KOG0108 mRNA cleavage and poly 99.4 3.9E-13 8.4E-18 136.9 5.0 81 31-118 19-99 (435)
77 KOG0129 Predicted RNA-binding 99.4 1.2E-11 2.6E-16 124.6 15.5 159 28-189 257-432 (520)
78 PLN03120 nucleic acid binding 99.4 2.7E-12 5.9E-17 121.3 10.2 77 128-208 4-80 (260)
79 KOG1190 Polypyrimidine tract-b 99.4 2.3E-11 5E-16 119.0 16.6 169 32-215 152-380 (492)
80 PLN03213 repressor of silencin 99.4 2.4E-12 5.2E-17 128.2 9.6 77 29-116 9-87 (759)
81 KOG0130 RNA-binding protein RB 99.3 4.5E-12 9.7E-17 106.3 8.5 83 125-207 69-151 (170)
82 KOG0114 Predicted RNA-binding 99.3 6.4E-12 1.4E-16 100.8 9.1 84 25-118 13-96 (124)
83 KOG0126 Predicted RNA-binding 99.3 4.4E-13 9.6E-18 117.9 2.6 112 90-212 8-119 (219)
84 KOG0126 Predicted RNA-binding 99.3 1.9E-13 4.2E-18 120.1 0.2 82 28-116 33-114 (219)
85 smart00360 RRM RNA recognition 99.3 1.1E-11 2.3E-16 93.6 8.9 70 35-111 1-70 (71)
86 PLN03213 repressor of silencin 99.3 7.2E-12 1.6E-16 124.8 9.6 75 127-205 9-85 (759)
87 smart00362 RRM_2 RNA recogniti 99.3 1.3E-11 2.9E-16 93.4 8.7 71 130-202 1-71 (72)
88 KOG1365 RNA-binding protein Fu 99.3 1.9E-12 4.1E-17 125.4 4.7 165 30-202 161-356 (508)
89 KOG0111 Cyclophilin-type pepti 99.3 4E-12 8.6E-17 114.9 5.8 88 27-121 7-94 (298)
90 PLN03121 nucleic acid binding 99.3 1.9E-11 4.2E-16 113.8 10.5 76 29-115 4-79 (243)
91 smart00360 RRM RNA recognition 99.3 1.7E-11 3.7E-16 92.5 8.4 70 133-202 1-70 (71)
92 cd00590 RRM RRM (RNA recogniti 99.3 3.8E-11 8.3E-16 91.4 10.0 74 32-113 1-74 (74)
93 KOG1456 Heterogeneous nuclear 99.3 1.5E-10 3.3E-15 112.1 15.3 168 29-210 286-489 (494)
94 PLN03121 nucleic acid binding 99.2 3.8E-11 8.2E-16 111.9 9.9 74 127-204 4-77 (243)
95 COG0724 RNA-binding proteins ( 99.2 4.2E-11 9E-16 114.6 10.6 79 128-206 115-193 (306)
96 KOG0132 RNA polymerase II C-te 99.2 2.3E-11 5E-16 127.2 8.4 111 27-150 418-528 (894)
97 KOG0109 RNA-binding protein LA 99.2 1.7E-11 3.7E-16 115.2 5.8 75 129-211 3-77 (346)
98 cd00590 RRM RRM (RNA recogniti 99.2 1.4E-10 3E-15 88.2 9.5 73 130-203 1-73 (74)
99 KOG0111 Cyclophilin-type pepti 99.2 1.5E-11 3.2E-16 111.2 3.9 80 127-206 9-88 (298)
100 KOG4454 RNA binding protein (R 99.2 9.5E-12 2.1E-16 112.6 1.6 147 25-195 4-150 (267)
101 KOG0120 Splicing factor U2AF, 99.1 8.4E-11 1.8E-15 120.6 8.3 167 27-206 172-367 (500)
102 smart00361 RRM_1 RNA recogniti 99.1 1.6E-10 3.5E-15 88.9 7.8 61 142-202 2-69 (70)
103 smart00361 RRM_1 RNA recogniti 99.1 2.3E-10 4.9E-15 88.1 8.0 61 44-111 2-69 (70)
104 KOG0108 mRNA cleavage and poly 99.1 1.4E-10 3E-15 118.4 7.8 80 129-208 19-98 (435)
105 KOG0114 Predicted RNA-binding 99.1 4.4E-10 9.6E-15 90.3 8.7 73 127-202 17-89 (124)
106 KOG4210 Nuclear localization s 99.1 4E-10 8.7E-15 109.9 8.2 163 29-199 87-255 (285)
107 PF13893 RRM_5: RNA recognitio 99.0 8.4E-10 1.8E-14 80.9 7.5 56 47-114 1-56 (56)
108 KOG0116 RasGAP SH3 binding pro 99.0 1.9E-09 4.2E-14 109.4 12.7 77 129-206 289-365 (419)
109 PF13893 RRM_5: RNA recognitio 99.0 1.9E-09 4E-14 79.0 7.9 55 145-204 1-55 (56)
110 KOG0131 Splicing factor 3b, su 99.0 7.1E-10 1.5E-14 98.0 6.1 80 126-205 7-86 (203)
111 KOG0128 RNA-binding protein SA 99.0 3.4E-11 7.3E-16 127.4 -3.2 145 30-204 667-811 (881)
112 KOG0415 Predicted peptidyl pro 99.0 8.3E-10 1.8E-14 106.4 6.4 86 125-210 236-321 (479)
113 KOG4208 Nucleolar RNA-binding 99.0 2.5E-09 5.3E-14 96.6 8.4 83 28-117 47-130 (214)
114 KOG0153 Predicted RNA-binding 98.9 5.3E-09 1.2E-13 100.9 9.7 79 28-118 226-304 (377)
115 KOG4205 RNA-binding protein mu 98.9 1.7E-09 3.7E-14 106.0 6.4 118 30-155 97-214 (311)
116 KOG0415 Predicted peptidyl pro 98.9 4E-09 8.7E-14 101.7 7.5 82 27-115 236-317 (479)
117 KOG0112 Large RNA-binding prot 98.9 1.7E-09 3.7E-14 115.1 4.8 157 27-204 369-525 (975)
118 KOG0226 RNA-binding proteins [ 98.8 4.1E-09 8.9E-14 97.7 6.2 165 30-202 96-264 (290)
119 PF04059 RRM_2: RNA recognitio 98.8 3.9E-08 8.4E-13 80.0 10.1 85 31-116 2-86 (97)
120 KOG4209 Splicing factor RNPS1, 98.8 5.9E-09 1.3E-13 98.5 6.2 84 23-114 94-177 (231)
121 KOG4208 Nucleolar RNA-binding 98.8 1.8E-08 3.9E-13 91.0 7.7 79 127-205 48-127 (214)
122 KOG1365 RNA-binding protein Fu 98.8 9.4E-08 2E-12 93.3 13.0 153 28-189 58-225 (508)
123 KOG0146 RNA-binding protein ET 98.8 9.3E-09 2E-13 95.8 5.6 86 28-120 283-368 (371)
124 KOG4661 Hsp27-ERE-TATA-binding 98.7 3E-08 6.5E-13 100.8 8.8 81 28-115 403-483 (940)
125 KOG4660 Protein Mei2, essentia 98.7 1.6E-08 3.5E-13 103.1 6.9 147 22-188 67-231 (549)
126 KOG4661 Hsp27-ERE-TATA-binding 98.7 2.4E-08 5.3E-13 101.4 7.2 77 129-205 406-482 (940)
127 KOG2193 IGF-II mRNA-binding pr 98.7 4.1E-09 8.9E-14 103.7 0.6 152 31-204 2-153 (584)
128 KOG0533 RRM motif-containing p 98.7 8.6E-08 1.9E-12 90.6 9.4 81 27-115 80-160 (243)
129 KOG0132 RNA polymerase II C-te 98.6 4.9E-08 1.1E-12 102.8 7.5 73 128-206 421-493 (894)
130 KOG0533 RRM motif-containing p 98.6 1.3E-07 2.9E-12 89.3 8.5 81 127-208 82-162 (243)
131 KOG0153 Predicted RNA-binding 98.6 1.7E-07 3.7E-12 90.7 7.7 74 125-204 225-299 (377)
132 KOG4206 Spliceosomal protein s 98.6 2.1E-07 4.6E-12 85.4 8.0 80 127-209 8-91 (221)
133 KOG4307 RNA binding protein RB 98.5 1.2E-07 2.7E-12 98.5 6.4 165 29-203 310-509 (944)
134 KOG4307 RNA binding protein RB 98.5 4.6E-07 9.9E-12 94.4 8.9 76 129-204 868-943 (944)
135 KOG4209 Splicing factor RNPS1, 98.4 5.9E-07 1.3E-11 85.0 8.4 83 125-208 98-180 (231)
136 KOG0226 RNA-binding proteins [ 98.4 3.2E-07 6.9E-12 85.3 5.0 82 26-114 186-267 (290)
137 KOG1995 Conserved Zn-finger pr 98.4 1E-06 2.2E-11 86.1 8.6 79 127-205 65-151 (351)
138 KOG0116 RasGAP SH3 binding pro 98.4 5.5E-07 1.2E-11 91.7 6.6 75 30-112 288-362 (419)
139 KOG0106 Alternative splicing f 98.3 4.4E-07 9.5E-12 84.0 3.5 63 129-199 2-64 (216)
140 KOG1995 Conserved Zn-finger pr 98.2 1.1E-06 2.3E-11 85.9 4.7 85 27-118 63-155 (351)
141 KOG1457 RNA binding protein (c 98.2 1.2E-05 2.5E-10 73.7 10.0 72 127-198 33-105 (284)
142 KOG4454 RNA binding protein (R 98.2 7E-07 1.5E-11 81.3 2.0 78 127-206 8-85 (267)
143 PF04059 RRM_2: RNA recognitio 98.2 1.3E-05 2.9E-10 65.2 8.8 70 129-198 2-73 (97)
144 KOG4849 mRNA cleavage factor I 98.1 3.3E-06 7.1E-11 81.7 5.7 75 128-202 80-156 (498)
145 KOG0151 Predicted splicing reg 98.1 3.8E-06 8.2E-11 88.0 6.5 81 29-115 173-255 (877)
146 KOG4660 Protein Mei2, essentia 98.1 1.6E-06 3.4E-11 88.9 3.5 72 125-201 72-143 (549)
147 KOG4676 Splicing factor, argin 98.1 1.3E-06 2.9E-11 85.6 2.7 157 30-198 7-216 (479)
148 KOG1548 Transcription elongati 98.0 1.8E-05 3.9E-10 76.8 7.9 79 127-206 133-219 (382)
149 PF08777 RRM_3: RNA binding mo 97.9 1.8E-05 3.9E-10 65.8 6.0 59 129-193 2-60 (105)
150 KOG0151 Predicted splicing reg 97.9 1.7E-05 3.7E-10 83.2 6.5 84 125-208 171-257 (877)
151 PF11608 Limkain-b1: Limkain b 97.8 0.0001 2.2E-09 57.6 7.7 71 31-117 3-77 (90)
152 KOG1855 Predicted RNA-binding 97.8 4.1E-05 8.9E-10 76.3 6.0 69 126-194 229-310 (484)
153 PF11608 Limkain-b1: Limkain b 97.7 0.00016 3.6E-09 56.5 7.1 67 129-205 3-74 (90)
154 PF08777 RRM_3: RNA binding mo 97.7 0.0001 2.2E-09 61.3 6.1 59 31-98 2-60 (105)
155 KOG0128 RNA-binding protein SA 97.6 3.9E-06 8.4E-11 89.8 -3.4 157 30-195 571-734 (881)
156 KOG4210 Nuclear localization s 97.6 4.5E-05 9.7E-10 74.7 3.9 82 30-119 184-266 (285)
157 KOG2314 Translation initiation 97.6 0.0002 4.3E-09 73.7 8.1 79 27-112 55-139 (698)
158 KOG4849 mRNA cleavage factor I 97.6 5.6E-05 1.2E-09 73.4 3.8 70 30-100 80-149 (498)
159 COG5175 MOT2 Transcriptional r 97.4 0.00033 7.2E-09 67.9 7.1 78 127-204 113-199 (480)
160 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00039 8.3E-09 50.2 5.6 53 30-92 1-53 (53)
161 COG5175 MOT2 Transcriptional r 97.4 0.00044 9.5E-09 67.0 7.0 92 19-116 103-202 (480)
162 KOG0115 RNA-binding protein p5 97.3 0.00079 1.7E-08 63.2 7.1 94 87-197 6-99 (275)
163 KOG0115 RNA-binding protein p5 97.2 0.00063 1.4E-08 63.9 5.4 105 3-112 5-109 (275)
164 KOG0129 Predicted RNA-binding 97.1 0.0013 2.7E-08 67.5 7.8 63 29-94 369-432 (520)
165 PF10309 DUF2414: Protein of u 97.1 0.0025 5.4E-08 47.3 7.1 57 30-95 5-62 (62)
166 KOG1855 Predicted RNA-binding 97.0 0.00047 1E-08 68.9 3.4 68 28-97 229-308 (484)
167 KOG2591 c-Mpl binding protein, 96.9 0.0031 6.6E-08 65.1 8.4 84 3-96 148-233 (684)
168 KOG2314 Translation initiation 96.9 0.0021 4.5E-08 66.4 7.1 70 128-198 58-133 (698)
169 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0026 5.6E-08 45.9 5.4 52 129-187 2-53 (53)
170 KOG2202 U2 snRNP splicing fact 96.8 0.00061 1.3E-08 64.0 1.8 62 143-205 83-145 (260)
171 KOG1996 mRNA splicing factor [ 96.7 0.0036 7.8E-08 59.8 6.6 62 141-202 299-361 (378)
172 KOG3152 TBP-binding protein, a 96.5 0.0014 3.1E-08 61.5 2.3 73 127-199 73-157 (278)
173 PF08675 RNA_bind: RNA binding 96.3 0.011 2.5E-07 46.3 5.7 55 31-97 10-64 (87)
174 KOG0921 Dosage compensation co 96.2 0.031 6.8E-07 61.3 10.7 10 279-288 1243-1252(1282)
175 PF08081 RBM1CTR: RBM1CTR (NUC 96.1 0.0062 1.3E-07 41.2 3.0 25 337-365 21-45 (45)
176 KOG3152 TBP-binding protein, a 96.1 0.0041 8.9E-08 58.5 2.9 68 30-100 74-153 (278)
177 PF08952 DUF1866: Domain of un 96.0 0.02 4.3E-07 49.9 6.5 56 143-207 51-106 (146)
178 KOG2202 U2 snRNP splicing fact 95.9 0.0045 9.8E-08 58.3 2.3 62 45-114 83-145 (260)
179 PF10309 DUF2414: Protein of u 95.9 0.03 6.4E-07 41.6 6.1 55 128-190 5-62 (62)
180 KOG2135 Proteins containing th 95.8 0.0057 1.2E-07 62.1 2.6 60 141-207 386-445 (526)
181 PF05172 Nup35_RRM: Nup53/35/4 95.8 0.055 1.2E-06 44.4 7.9 71 128-200 6-83 (100)
182 KOG2416 Acinus (induces apopto 95.8 0.0079 1.7E-07 62.7 3.5 76 29-114 443-519 (718)
183 PF15023 DUF4523: Protein of u 95.7 0.076 1.6E-06 45.9 8.5 74 28-116 84-161 (166)
184 PF07576 BRAP2: BRCA1-associat 95.6 0.22 4.7E-06 41.7 10.8 67 30-100 13-79 (110)
185 KOG4676 Splicing factor, argin 95.5 0.016 3.4E-07 57.7 4.5 73 129-202 8-83 (479)
186 KOG1996 mRNA splicing factor [ 95.4 0.046 1E-06 52.5 7.0 67 43-115 299-365 (378)
187 PF05172 Nup35_RRM: Nup53/35/4 95.0 0.088 1.9E-06 43.2 6.6 80 29-115 5-90 (100)
188 KOG2416 Acinus (induces apopto 94.9 0.02 4.3E-07 59.8 3.2 72 125-202 441-513 (718)
189 PF10567 Nab6_mRNP_bdg: RNA-re 94.9 0.55 1.2E-05 45.4 12.6 159 30-193 15-214 (309)
190 KOG3973 Uncharacterized conser 94.7 0.26 5.7E-06 48.4 10.2 9 38-46 157-165 (465)
191 KOG0112 Large RNA-binding prot 94.6 0.051 1.1E-06 59.5 5.5 81 26-117 451-531 (975)
192 KOG0804 Cytoplasmic Zn-finger 94.2 0.17 3.7E-06 51.5 7.7 68 30-101 74-141 (493)
193 KOG4574 RNA-binding protein (c 94.0 0.04 8.6E-07 59.8 3.0 75 32-117 300-374 (1007)
194 PF07576 BRAP2: BRCA1-associat 93.9 0.59 1.3E-05 39.1 9.4 67 129-197 14-81 (110)
195 PF08952 DUF1866: Domain of un 93.9 0.19 4.2E-06 43.9 6.6 69 30-114 27-104 (146)
196 PF03467 Smg4_UPF3: Smg-4/UPF3 93.9 0.11 2.5E-06 47.2 5.5 88 27-116 4-97 (176)
197 KOG2591 c-Mpl binding protein, 93.9 0.14 3.1E-06 53.2 6.7 72 127-205 174-249 (684)
198 KOG2068 MOT2 transcription fac 93.9 0.037 8E-07 54.3 2.4 113 28-147 75-199 (327)
199 PF08675 RNA_bind: RNA binding 93.8 0.25 5.3E-06 38.9 6.3 55 129-192 10-64 (87)
200 KOG2253 U1 snRNP complex, subu 93.3 0.01 2.2E-07 62.8 -2.7 62 27-100 37-98 (668)
201 KOG2068 MOT2 transcription fac 93.2 0.027 5.9E-07 55.2 0.3 76 128-203 77-158 (327)
202 PF07292 NID: Nmi/IFP 35 domai 93.1 0.13 2.9E-06 41.0 4.0 69 78-149 1-73 (88)
203 PF15023 DUF4523: Protein of u 93.1 0.29 6.4E-06 42.4 6.2 69 129-205 87-159 (166)
204 PRK11634 ATP-dependent RNA hel 92.9 1 2.2E-05 49.3 11.9 60 137-205 496-560 (629)
205 PF03467 Smg4_UPF3: Smg-4/UPF3 92.0 0.33 7.2E-06 44.2 5.7 70 128-197 7-82 (176)
206 KOG2193 IGF-II mRNA-binding pr 91.8 0.16 3.5E-06 51.2 3.5 71 129-205 2-73 (584)
207 PF11767 SET_assoc: Histone ly 90.9 0.85 1.8E-05 34.4 5.9 52 139-199 11-62 (66)
208 KOG2135 Proteins containing th 90.5 0.18 4E-06 51.5 2.6 81 24-118 366-447 (526)
209 PF03880 DbpA: DbpA RNA bindin 90.4 1.1 2.4E-05 34.5 6.3 68 32-114 2-74 (74)
210 PF11767 SET_assoc: Histone ly 89.8 1.4 3E-05 33.2 6.3 48 41-100 11-58 (66)
211 KOG4213 RNA-binding protein La 89.8 0.25 5.4E-06 44.3 2.6 64 25-94 106-169 (205)
212 PF04847 Calcipressin: Calcipr 89.8 0.57 1.2E-05 42.9 5.0 60 140-205 7-68 (184)
213 PF04847 Calcipressin: Calcipr 87.8 1.2 2.7E-05 40.7 5.8 63 42-117 7-71 (184)
214 KOG2253 U1 snRNP complex, subu 87.2 0.38 8.3E-06 51.3 2.4 71 125-204 37-107 (668)
215 PF03880 DbpA: DbpA RNA bindin 86.4 2.3 5E-05 32.7 5.8 58 138-204 11-73 (74)
216 KOG4483 Uncharacterized conser 86.3 2.6 5.6E-05 42.5 7.4 64 127-198 390-454 (528)
217 KOG2318 Uncharacterized conser 85.7 4.4 9.4E-05 42.9 9.0 82 125-206 171-304 (650)
218 KOG4285 Mitotic phosphoprotein 85.3 3.7 8E-05 40.0 7.7 60 30-100 197-256 (350)
219 PF14111 DUF4283: Domain of un 84.7 0.82 1.8E-05 40.0 2.9 109 41-162 28-139 (153)
220 KOG0804 Cytoplasmic Zn-finger 83.2 4.5 9.8E-05 41.5 7.6 68 128-197 74-142 (493)
221 KOG4483 Uncharacterized conser 83.0 2.9 6.3E-05 42.2 6.1 56 30-94 391-446 (528)
222 KOG4574 RNA-binding protein (c 82.9 0.79 1.7E-05 50.2 2.3 59 133-197 303-361 (1007)
223 PRK14548 50S ribosomal protein 82.6 4.8 0.0001 31.9 6.1 57 34-95 24-81 (84)
224 TIGR03636 L23_arch archaeal ri 81.8 5.7 0.00012 30.9 6.1 57 33-94 16-73 (77)
225 KOG2891 Surface glycoprotein [ 80.7 3.3 7.1E-05 39.8 5.3 147 41-195 48-247 (445)
226 KOG2318 Uncharacterized conser 79.7 8.9 0.00019 40.7 8.5 74 27-100 171-293 (650)
227 PF02714 DUF221: Domain of unk 73.7 5.9 0.00013 39.4 5.4 57 78-151 1-57 (325)
228 KOG4285 Mitotic phosphoprotein 72.9 5.5 0.00012 38.8 4.6 62 130-199 199-260 (350)
229 PF03468 XS: XS domain; Inter 70.1 7 0.00015 33.0 4.2 48 32-85 10-66 (116)
230 KOG4213 RNA-binding protein La 63.4 6.7 0.00015 35.4 2.8 57 129-189 112-169 (205)
231 PTZ00191 60S ribosomal protein 62.8 24 0.00052 30.9 6.1 55 35-94 86-141 (145)
232 KOG4410 5-formyltetrahydrofola 62.6 18 0.00039 35.1 5.7 59 30-96 330-395 (396)
233 KOG4410 5-formyltetrahydrofola 58.0 19 0.0004 35.0 4.9 56 129-190 331-394 (396)
234 PRK10629 EnvZ/OmpR regulon mod 56.0 1.3E+02 0.0027 25.8 9.4 47 42-98 50-96 (127)
235 COG5193 LHP1 La protein, small 53.6 5.1 0.00011 40.6 0.5 62 29-93 173-244 (438)
236 PF15513 DUF4651: Domain of un 49.7 33 0.00071 25.5 4.1 19 142-160 8-26 (62)
237 KOG4019 Calcineurin-mediated s 49.7 14 0.00031 33.5 2.6 64 130-199 12-80 (193)
238 PF03468 XS: XS domain; Inter 48.6 39 0.00084 28.5 5.0 45 140-187 29-74 (116)
239 PF04278 Tic22: Tic22-like fam 48.1 95 0.0021 30.3 8.3 148 40-194 61-225 (274)
240 PF00403 HMA: Heavy-metal-asso 47.3 1E+02 0.0022 22.0 6.6 54 130-189 1-58 (62)
241 cd04908 ACT_Bt0572_1 N-termina 46.7 1.1E+02 0.0023 22.3 6.8 46 43-94 14-59 (66)
242 PF07530 PRE_C2HC: Associated 45.6 44 0.00096 25.3 4.4 62 45-115 2-63 (68)
243 cd04889 ACT_PDH-BS-like C-term 44.2 99 0.0022 21.5 6.0 45 43-92 11-55 (56)
244 KOG1295 Nonsense-mediated deca 43.8 24 0.00052 35.7 3.5 76 29-106 6-82 (376)
245 PRK11901 hypothetical protein; 43.3 47 0.001 33.1 5.3 61 33-98 245-307 (327)
246 PF08002 DUF1697: Protein of u 42.7 1E+02 0.0022 26.7 6.9 116 32-160 5-131 (137)
247 PF07292 NID: Nmi/IFP 35 domai 42.4 9.3 0.0002 30.6 0.3 34 19-52 41-74 (88)
248 KOG4008 rRNA processing protei 41.7 23 0.0005 33.5 2.7 35 26-62 36-70 (261)
249 KOG4019 Calcineurin-mediated s 41.6 27 0.00058 31.7 3.1 75 30-117 10-90 (193)
250 cd04909 ACT_PDH-BS C-terminal 40.1 1.4E+02 0.0031 21.7 6.6 51 43-97 14-64 (69)
251 KOG1596 Fibrillarin and relate 39.2 1E+02 0.0022 29.6 6.6 10 359-368 100-109 (317)
252 PRK09631 DNA topoisomerase IV 39.0 1.2E+02 0.0026 33.3 8.1 61 30-97 220-284 (635)
253 COG1509 KamA Lysine 2,3-aminom 38.5 3.1E+02 0.0067 27.9 10.2 144 30-194 160-316 (369)
254 KOG2891 Surface glycoprotein [ 38.0 33 0.00072 33.1 3.3 39 25-65 144-194 (445)
255 KOG2014 SMT3/SUMO-activating c 38.0 22 0.00048 35.0 2.1 65 134-199 241-312 (331)
256 PF08734 GYD: GYD domain; Int 37.8 1.5E+02 0.0032 23.7 6.6 48 44-97 22-69 (91)
257 PRK08559 nusG transcription an 37.5 78 0.0017 27.9 5.5 44 47-97 25-68 (153)
258 cd04883 ACT_AcuB C-terminal AC 37.3 1.6E+02 0.0035 21.4 6.8 47 43-93 14-62 (72)
259 cd04903 ACT_LSD C-terminal ACT 37.2 1.5E+02 0.0032 21.1 6.3 52 42-98 11-62 (71)
260 KOG2295 C2H2 Zn-finger protein 37.1 4.9 0.00011 42.3 -2.6 68 30-100 231-298 (648)
261 KOG2295 C2H2 Zn-finger protein 37.0 4.7 0.0001 42.4 -2.7 72 126-197 229-300 (648)
262 PF09869 DUF2096: Uncharacteri 36.9 1.4E+02 0.003 26.9 6.7 55 28-96 110-164 (169)
263 cd04904 ACT_AAAH ACT domain of 36.5 1.9E+02 0.004 21.8 7.4 53 42-97 12-65 (74)
264 PF14026 DUF4242: Protein of u 36.0 1.4E+02 0.0031 23.0 6.0 64 32-95 2-67 (77)
265 PHA00019 IV phage assembly pro 35.7 3.6E+02 0.0077 28.1 10.9 150 41-206 27-205 (428)
266 COG5638 Uncharacterized conser 35.6 61 0.0013 33.1 4.8 29 171-199 259-287 (622)
267 KOG3424 40S ribosomal protein 34.7 1.2E+02 0.0027 25.5 5.6 51 40-91 33-85 (132)
268 COG5227 SMT3 Ubiquitin-like pr 34.1 1.1E+02 0.0023 24.6 5.0 75 21-97 24-100 (103)
269 cd04905 ACT_CM-PDT C-terminal 34.0 1.6E+02 0.0034 22.4 6.1 52 43-97 14-68 (80)
270 PF15513 DUF4651: Domain of un 33.9 87 0.0019 23.3 4.2 13 44-56 8-20 (62)
271 cd04880 ACT_AAAH-PDT-like ACT 33.1 2E+02 0.0043 21.4 6.5 53 42-97 11-66 (75)
272 PF06919 Phage_T4_Gp30_7: Phag 32.9 78 0.0017 26.0 4.1 77 53-150 28-113 (121)
273 TIGR03399 RNA_3prim_cycl RNA 3 32.3 3.5E+02 0.0075 27.2 9.7 37 42-83 130-166 (326)
274 smart00596 PRE_C2HC PRE_C2HC d 32.0 51 0.0011 25.0 2.8 54 143-199 2-56 (69)
275 TIGR02515 IV_pilus_PilQ type I 31.7 1.7E+02 0.0037 30.3 7.7 64 43-114 9-74 (418)
276 COG1163 DRG Predicted GTPase [ 31.6 5.6E+02 0.012 25.9 11.6 127 2-153 157-289 (365)
277 COG3254 Uncharacterized conser 31.5 1.4E+02 0.003 24.7 5.4 43 45-93 27-69 (105)
278 COG0030 KsgA Dimethyladenosine 31.2 65 0.0014 31.2 4.1 50 15-66 79-129 (259)
279 COG2608 CopZ Copper chaperone 31.0 1.8E+02 0.0039 21.9 5.8 45 129-179 4-48 (71)
280 cd04879 ACT_3PGDH-like ACT_3PG 30.3 2E+02 0.0043 20.3 6.0 61 33-98 2-62 (71)
281 PRK04204 RNA 3'-terminal-phosp 30.0 4.3E+02 0.0094 26.7 10.0 38 42-84 132-169 (343)
282 PF08544 GHMP_kinases_C: GHMP 29.7 2E+02 0.0043 21.7 6.1 45 44-96 36-80 (85)
283 cd00187 TOP4c DNA Topoisomeras 29.6 1.5E+02 0.0032 31.2 6.7 63 31-96 226-290 (445)
284 cd00874 RNA_Cyclase_Class_II R 29.2 2.9E+02 0.0062 27.8 8.5 46 130-177 188-237 (326)
285 PRK10905 cell division protein 29.0 1.1E+02 0.0024 30.5 5.3 60 34-98 248-309 (328)
286 KOG3262 H/ACA small nucleolar 28.9 65 0.0014 29.4 3.4 9 152-160 98-106 (215)
287 cd06405 PB1_Mekk2_3 The PB1 do 28.8 2.8E+02 0.006 21.5 8.2 61 36-112 14-75 (79)
288 PF07530 PRE_C2HC: Associated 28.2 72 0.0016 24.1 3.1 54 143-199 2-56 (68)
289 TIGR03820 lys_2_3_AblA lysine- 28.2 7E+02 0.015 26.0 12.8 60 129-194 251-312 (417)
290 PRK10560 hofQ outer membrane p 28.1 4.4E+02 0.0095 27.0 9.9 64 43-114 3-68 (386)
291 PRK10590 ATP-dependent RNA hel 28.0 7E+02 0.015 25.9 13.5 14 79-92 223-236 (456)
292 COG0018 ArgS Arginyl-tRNA synt 27.4 3.8E+02 0.0083 29.2 9.6 103 42-163 58-165 (577)
293 cd04882 ACT_Bt0572_2 C-termina 26.9 2.3E+02 0.005 19.9 6.0 48 43-94 12-59 (65)
294 smart00596 PRE_C2HC PRE_C2HC d 26.7 1.2E+02 0.0027 23.0 4.1 44 45-90 2-45 (69)
295 PHA02531 20 portal vertex prot 26.5 73 0.0016 33.5 3.8 37 130-170 283-319 (514)
296 CHL00030 rpl23 ribosomal prote 26.2 2.1E+02 0.0045 23.1 5.6 49 15-68 7-56 (93)
297 PRK11230 glycolate oxidase sub 25.9 1.6E+02 0.0035 31.4 6.4 51 44-98 203-257 (499)
298 cd06398 PB1_Joka2 The PB1 doma 25.3 3.6E+02 0.0077 21.6 9.0 65 136-207 25-89 (91)
299 PF03439 Spt5-NGN: Early trans 25.3 1.1E+02 0.0023 24.0 3.8 33 59-97 34-66 (84)
300 COG4907 Predicted membrane pro 25.2 1.3E+02 0.0029 31.4 5.3 21 142-162 488-513 (595)
301 PF13721 SecD-TM1: SecD export 25.1 3.8E+02 0.0082 21.8 7.5 44 44-97 48-91 (101)
302 PF10567 Nab6_mRNP_bdg: RNA-re 24.3 1.2E+02 0.0025 29.9 4.5 60 127-186 14-80 (309)
303 PF10281 Ish1: Putative stress 24.2 62 0.0014 21.2 1.9 16 41-56 3-18 (38)
304 PF07876 Dabb: Stress responsi 24.2 2E+02 0.0043 22.4 5.3 58 35-92 6-71 (97)
305 COG4874 Uncharacterized protei 23.9 4.6E+02 0.01 25.2 8.1 124 28-162 156-297 (318)
306 TIGR01033 DNA-binding regulato 23.8 6.4E+02 0.014 24.0 9.9 45 30-83 94-143 (238)
307 PF08156 NOP5NT: NOP5NT (NUC12 23.8 29 0.00062 26.2 0.2 38 45-96 27-65 (67)
308 PRK09630 DNA topoisomerase IV 23.6 2.1E+02 0.0046 30.1 6.5 63 29-97 219-284 (479)
309 COG3227 LasB Zinc metalloprote 23.3 3.1E+02 0.0067 29.0 7.5 57 40-114 49-105 (507)
310 PRK12758 DNA topoisomerase IV 23.3 3.1E+02 0.0067 31.3 8.0 61 29-96 240-304 (869)
311 PF00403 HMA: Heavy-metal-asso 23.0 2.8E+02 0.0061 19.6 6.6 54 32-94 1-58 (62)
312 PF13291 ACT_4: ACT domain; PD 22.3 3.4E+02 0.0074 20.3 7.6 66 32-99 8-73 (80)
313 PF02685 Glucokinase: Glucokin 22.1 12 0.00026 37.4 -2.9 60 2-67 39-100 (316)
314 TIGR03636 L23_arch archaeal ri 22.1 2.4E+02 0.0051 21.9 5.0 54 133-189 18-73 (77)
315 KOG1295 Nonsense-mediated deca 22.0 98 0.0021 31.5 3.6 69 128-196 7-78 (376)
316 PF15407 Spo7_2_N: Sporulation 21.9 34 0.00073 25.9 0.3 28 27-54 24-51 (67)
317 TIGR00405 L26e_arch ribosomal 21.5 2.1E+02 0.0046 24.7 5.3 25 73-97 36-60 (145)
318 KOG4365 Uncharacterized conser 21.4 16 0.00034 37.6 -2.1 63 30-96 3-65 (572)
319 PRK02261 methylaspartate mutas 21.3 4.4E+02 0.0096 22.6 7.2 25 129-153 86-112 (137)
320 PF01071 GARS_A: Phosphoribosy 21.3 2.5E+02 0.0054 26.0 5.9 47 43-96 25-71 (194)
321 cd00875 RNA_Cyclase_Class_I RN 21.0 7.2E+02 0.016 25.1 9.7 42 37-83 119-167 (341)
322 PF14893 PNMA: PNMA 20.9 64 0.0014 32.5 2.0 28 26-53 14-41 (331)
323 PF02714 DUF221: Domain of unk 20.8 78 0.0017 31.3 2.7 22 173-194 1-22 (325)
324 cd04931 ACT_PAH ACT domain of 20.8 3.4E+02 0.0074 21.6 5.9 53 42-97 26-80 (90)
325 PF02571 CbiJ: Precorrin-6x re 20.5 5.1E+02 0.011 24.8 8.1 66 30-100 44-133 (249)
326 PTZ00071 40S ribosomal protein 20.2 3.9E+02 0.0085 23.1 6.4 50 40-91 34-87 (132)
327 PF04127 DFP: DNA / pantothena 20.2 3.2E+02 0.0069 24.9 6.4 60 32-95 20-79 (185)
328 cd04887 ACT_MalLac-Enz ACT_Mal 20.1 3.6E+02 0.0077 19.7 8.4 63 33-98 2-64 (74)
329 KOG1175 Acyl-CoA synthetase [L 20.0 1.1E+02 0.0024 33.5 3.8 126 4-152 465-599 (626)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=5.3e-36 Score=299.17 Aligned_cols=173 Identities=22% Similarity=0.392 Sum_probs=155.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||+++|+++|+++|++||+ |++|+|++|+. |++++|||||+|+++++|++||+.|++..+ .
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~--V~~v~i~~d~~-tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l----~ 175 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGP--INTCRIMRDYK-TGYSFGYAFVDFGSEADSQRAIKNLNGITV----R 175 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC--EEEEEEEecCC-CCccCcEEEEEEccHHHHHHHHHHcCCCcc----C
Confidence 3445789999999999999999999999999 99999999976 899999999999999999999999999887 5
Q ss_pred CceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 013047 106 ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 185 (450)
Q Consensus 106 gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~ 185 (450)
+++|+|.++.+..+. ...++|||+||++.+||++|+++|++||+|+.|.|+.++.++++++||||+|++.++|++
T Consensus 176 gr~i~V~~a~p~~~~-----~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~ 250 (346)
T TIGR01659 176 NKRLKVSYARPGGES-----IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQE 250 (346)
T ss_pred Cceeeeecccccccc-----cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHH
Confidence 899999998764322 235689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeecCCeeEEEEEEeeCC
Q 013047 186 CINAINNKEFSDGNSKVKLRARLSN 210 (450)
Q Consensus 186 Ai~~l~g~~~~g~~i~v~v~~~~~~ 210 (450)
||++||++.|.+....|.|+++...
T Consensus 251 Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 251 AISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred HHHHhCCCccCCCceeEEEEECCcc
Confidence 9999999999987666666655443
No 2
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7.8e-33 Score=270.17 Aligned_cols=200 Identities=28% Similarity=0.404 Sum_probs=181.3
Q ss_pred hhHHHHHhhCCCcccC-CcccccCCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEE
Q 013047 3 QLFLIYILIFPLKQIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM 81 (450)
Q Consensus 3 ~~~~~~le~~~~~~~~-~k~~~~~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVe 81 (450)
+..+.+|..+++..|+ +|.|.+|.++++++|||+|||+++++++|.+.|++.++ .|++|.|...+.++.+++||||||
T Consensus 136 e~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVte-GVvdVivy~~p~dk~KNRGFaFve 214 (506)
T KOG0117|consen 136 EEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTE-GVVDVIVYPSPDDKTKNRGFAFVE 214 (506)
T ss_pred HHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCC-CeeEEEEecCccccccccceEEEE
Confidence 4678899999888765 99999999999999999999999999999999999986 899999999888889999999999
Q ss_pred eCCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEE
Q 013047 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLA 161 (450)
Q Consensus 82 F~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~ 161 (450)
|++...|..|-.+|-...|.+ .+..|.|+||+++.+.+++.+.+.+.|||.||+.+|||+.|+++|++||.|+.|+.+
T Consensus 215 Ye~H~~Aa~aRrKl~~g~~kl--wgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~ 292 (506)
T KOG0117|consen 215 YESHRAAAMARRKLMPGKIKL--WGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP 292 (506)
T ss_pred eecchhHHHHHhhccCCceee--cCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc
Confidence 999999999987766655554 378999999999999999999999999999999999999999999999999999887
Q ss_pred ecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEEeeCCCCC
Q 013047 162 RNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMP 213 (450)
Q Consensus 162 ~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~~~~~~~~ 213 (450)
+| ||||.|.+.++|.+|++.||+++|+|..|.|++++..++.+.
T Consensus 293 rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 293 RD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred cc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhcc
Confidence 55 999999999999999999999999999988877765554443
No 3
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=2e-30 Score=271.81 Aligned_cols=193 Identities=27% Similarity=0.412 Sum_probs=164.9
Q ss_pred hhHHHHHhhCCCcccC-CcccccCCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEE
Q 013047 3 QLFLIYILIFPLKQIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM 81 (450)
Q Consensus 3 ~~~~~~le~~~~~~~~-~k~~~~~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVe 81 (450)
+-...+|+.+++..+. ++.+.++.+.++++|||+|||+++|+++|.++|++++. .|+++.++..+.++++++|||||+
T Consensus 110 e~A~~Ai~~lng~~i~~Gr~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~e-gvv~vIv~~~~~~kgKnRGFAFVe 188 (578)
T TIGR01648 110 EEAKEAVKLLNNYEIRPGRLLGVCISVDNCRLFVGGIPKNKKREEILEEFSKVTE-GVVDVIVYHSAADKKKNRGFAFVE 188 (578)
T ss_pred HHHHHHHHHcCCCeecCCccccccccccCceeEeecCCcchhhHHHHHHhhcccC-CceEEEEeccccccCccCceEEEE
Confidence 3456788888887774 78889999999999999999999999999999999974 366665554443467889999999
Q ss_pred eCCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhcc--CceEEEE
Q 013047 82 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY--GDVIRIV 159 (450)
Q Consensus 82 F~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~--G~v~~v~ 159 (450)
|++.++|++|+++|+...+.+ .++.|.|+|+.++.+..++.....++|||+||++++++++|+++|++| |+|+.|.
T Consensus 189 F~s~edAa~AirkL~~gki~l--~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~ 266 (578)
T TIGR01648 189 YESHRAAAMARRKLMPGRIQL--WGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVK 266 (578)
T ss_pred cCCHHHHHHHHHHhhccceEe--cCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEE
Confidence 999999999999887544333 378999999998887777777778999999999999999999999999 9999998
Q ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 160 LARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 160 i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
++ ++||||+|++.++|++||++||+++|.++.|+|.+..
T Consensus 267 ~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 267 KI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 75 4599999999999999999999999999987776654
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=5.3e-30 Score=258.81 Aligned_cols=200 Identities=19% Similarity=0.288 Sum_probs=168.9
Q ss_pred hhHHHHHhhCCCcccCCcccccCCC------CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeee
Q 013047 3 QLFLIYILIFPLKQICGKRCGTAPS------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76 (450)
Q Consensus 3 ~~~~~~le~~~~~~~~~k~~~~~~~------~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG 76 (450)
+-...+|+.+.+..+.++.+.+... ...++|||+|||.++++++|+++|++||. |..++++.+.. ++.++|
T Consensus 56 ~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~--i~~~~~~~~~~-~~~~~g 132 (352)
T TIGR01661 56 EDAEKAVNSLNGLRLQNKTIKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ--IITSRILSDNV-TGLSKG 132 (352)
T ss_pred HHHHHHHhhcccEEECCeeEEEEeecccccccccceEEECCccccCCHHHHHHHHhccCC--EEEEEEEecCC-CCCcCc
Confidence 3456788889999999999987543 24668999999999999999999999999 99999999865 789999
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCCCCcc---------------------------------
Q 013047 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE--------------------------------- 123 (450)
Q Consensus 77 ~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~~~~~--------------------------------- 123 (450)
||||+|++.++|++||+.||+..+. + ....|.|.++.........
T Consensus 133 ~~fv~f~~~~~A~~ai~~l~g~~~~-g-~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (352)
T TIGR01661 133 VGFIRFDKRDEADRAIKTLNGTTPS-G-CTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHH 210 (352)
T ss_pred EEEEEECCHHHHHHHHHHhCCCccC-C-CceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccC
Confidence 9999999999999999999998652 2 2467888887533210000
Q ss_pred ------------------------------------------------------ccCCccEEEEcCCCCCchhHHHHHhh
Q 013047 124 ------------------------------------------------------IMAHVKTVFLDGVPPHWKENQIRDQI 149 (450)
Q Consensus 124 ------------------------------------------------------~~~~~~~lfV~nLp~~~te~dL~~~F 149 (450)
......+|||+|||+++++++|+++|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F 290 (352)
T TIGR01661 211 AAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLF 290 (352)
T ss_pred cccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHH
Confidence 00112369999999999999999999
Q ss_pred hccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEEe
Q 013047 150 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 207 (450)
Q Consensus 150 ~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~~ 207 (450)
++||.|+.|.|+.+..|+.++|||||+|++.++|.+||++|||..|.|+.|+|.++..
T Consensus 291 ~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 291 GPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred HhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 9999999999999999999999999999999999999999999999999888777643
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=7.9e-30 Score=257.57 Aligned_cols=168 Identities=23% Similarity=0.389 Sum_probs=152.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
+.++|||+|||.++|+++|+++|++||+ |++|+|++|+. +++++|||||+|.+.++|++||+.|++..+ .++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~--i~~v~i~~d~~-~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l----~g~~ 74 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGE--IESCKLVRDKV-TGQSLGYGFVNYVRPEDAEKAVNSLNGLRL----QNKT 74 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCC--EEEEEEEEcCC-CCccceEEEEEECcHHHHHHHHhhcccEEE----CCee
Confidence 4689999999999999999999999999 99999999976 899999999999999999999999999877 5899
Q ss_pred EEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 013047 109 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188 (450)
Q Consensus 109 i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~ 188 (450)
|+|+++.+.... ....+|||+|||..+++++|+++|++||.|+.+.|+.+..++.++++|||+|++.++|++||+
T Consensus 75 i~v~~a~~~~~~-----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~ 149 (352)
T TIGR01661 75 IKVSYARPSSDS-----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIK 149 (352)
T ss_pred EEEEeecccccc-----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 999999765432 234689999999999999999999999999999999998888999999999999999999999
Q ss_pred HhCCCeecCCeeEEEEEEee
Q 013047 189 AINNKEFSDGNSKVKLRARL 208 (450)
Q Consensus 189 ~l~g~~~~g~~i~v~v~~~~ 208 (450)
.||+..+.+....+.|+.+.
T Consensus 150 ~l~g~~~~g~~~~i~v~~a~ 169 (352)
T TIGR01661 150 TLNGTTPSGCTEPITVKFAN 169 (352)
T ss_pred HhCCCccCCCceeEEEEECC
Confidence 99999999877666666543
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=1.1e-29 Score=266.67 Aligned_cols=171 Identities=22% Similarity=0.419 Sum_probs=151.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
..++|||+||++++|+++|+++|++||. |++|+|+.|+. |++++|||||+|++.++|++||+.||+..+ .++.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~--I~sV~I~~D~~-TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i----~GR~ 178 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGP--IKSINMSWDPA-TGKHKGFAFVEYEVPEAAQLALEQMNGQML----GGRN 178 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCC--EEEEEEeecCC-CCCcCCeEEEEeCcHHHHHHHHHhcCCeEE----ecce
Confidence 4679999999999999999999999999 99999999976 899999999999999999999999999877 5899
Q ss_pred EEEeecCCCCCCCc------cccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHH
Q 013047 109 VKVAFAEPLREPDP------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA 182 (450)
Q Consensus 109 i~v~~a~~~~~~~~------~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~ 182 (450)
|+|.+......... ......++|||+||+.++++++|+++|++||.|+.|.|+.++.+++++|||||+|++.++
T Consensus 179 IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~ 258 (612)
T TIGR01645 179 IKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 258 (612)
T ss_pred eeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHH
Confidence 99987543221111 112245799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeecCCeeEEEEEE
Q 013047 183 AVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 183 A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
|.+||+.||+.+|+|+.|+|...+
T Consensus 259 A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 259 QSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred HHHHHHHhCCCeeCCeEEEEEecC
Confidence 999999999999999986665433
No 7
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.1e-29 Score=243.89 Aligned_cols=172 Identities=26% Similarity=0.408 Sum_probs=154.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
.+.-+|||+.||..|+|+||+++|++||. |.+|.|++|+. |++++|||||+|.+.+||.+|+.+|+....+.| .-.
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~--V~einl~kDk~-t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG-~~~ 107 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGN--VYEINLIKDKS-TGQSKGCCFVKYYTRKEADEAINALHNQKTLPG-MHH 107 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCc--eeEEEeecccc-cCcccceEEEEeccHHHHHHHHHHhhcccccCC-CCc
Confidence 44668999999999999999999999999 99999999998 999999999999999999999999999988777 467
Q ss_pred eEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 013047 108 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187 (450)
Q Consensus 108 ~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai 187 (450)
.|+|++|+..++.. ....+|||+-|+..+||.+|+++|++||.|++|.|+++. .+.+||+|||+|++.|.|..||
T Consensus 108 pvqvk~Ad~E~er~----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Ai 182 (510)
T KOG0144|consen 108 PVQVKYADGERERI----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAI 182 (510)
T ss_pred ceeecccchhhhcc----ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHH
Confidence 89999998766653 245799999999999999999999999999999999984 6889999999999999999999
Q ss_pred HHhCCCee-cCCeeEEEEEEee
Q 013047 188 NAINNKEF-SDGNSKVKLRARL 208 (450)
Q Consensus 188 ~~l~g~~~-~g~~i~v~v~~~~ 208 (450)
++||+..- .|....+.|+.+.
T Consensus 183 ka~ng~~tmeGcs~PLVVkFAD 204 (510)
T KOG0144|consen 183 KALNGTQTMEGCSQPLVVKFAD 204 (510)
T ss_pred HhhccceeeccCCCceEEEecc
Confidence 99998874 5665666666543
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=3.7e-28 Score=253.96 Aligned_cols=172 Identities=20% Similarity=0.320 Sum_probs=151.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
+...++|||+|||.++|+++|+++|++||. |++|+|+.|+. +++++|||||+|.+.++|++||+ |++..+ .+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~--v~~v~i~~d~~-~~~skg~afVeF~~~e~A~~Al~-l~g~~~----~g 157 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGK--VRDVQCIKDRN-SRRSKGVAYVEFYDVESVIKALA-LTGQML----LG 157 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEeecCC-CCCcceEEEEEECCHHHHHHHHH-hCCCEE----CC
Confidence 445789999999999999999999999998 99999999876 89999999999999999999996 888877 48
Q ss_pred ceEEEeecCCCCCCCc-------cccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCC
Q 013047 107 RTVKVAFAEPLREPDP-------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 179 (450)
Q Consensus 107 r~i~v~~a~~~~~~~~-------~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s 179 (450)
+.|.|+.+...+.... ......++|||+||+..+|+++|+++|++||.|+.|.|+.+..++++++||||+|.+
T Consensus 158 ~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~ 237 (457)
T TIGR01622 158 RPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHD 237 (457)
T ss_pred eeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECC
Confidence 9999987654332211 111225799999999999999999999999999999999999899999999999999
Q ss_pred HHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 180 HEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 180 ~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
.++|++||+.|||..|.++.|.|.+..
T Consensus 238 ~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 238 AEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred HHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 999999999999999999887776654
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.1e-27 Score=220.85 Aligned_cols=166 Identities=20% Similarity=0.397 Sum_probs=148.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEE
Q 013047 31 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 110 (450)
Q Consensus 31 ~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~ 110 (450)
--|||+.|...++-++|++.|.+||+ |.+++|++|.+ |+++|||+||.|.+.+||+.||..||+.-| -.+.|+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGe--vS~akvirD~~-T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl----G~R~IR 135 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGE--VSDAKVIRDMN-TGKSKGYGFVSFPNKEDAENAIQQMNGQWL----GRRTIR 135 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccc--cccceEeeccc-CCcccceeEEeccchHHHHHHHHHhCCeee----ccceee
Confidence 36999999999999999999999999 99999999987 999999999999999999999999999977 489999
Q ss_pred EeecCCCCCCC-----------ccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCC
Q 013047 111 VAFAEPLREPD-----------PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 179 (450)
Q Consensus 111 v~~a~~~~~~~-----------~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s 179 (450)
-.||.-|.... .+.....++|||+|++..++|++|++.|+.||.|.+|+|.++ +||+||.|++
T Consensus 136 TNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~t 209 (321)
T KOG0148|consen 136 TNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFET 209 (321)
T ss_pred ccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecc
Confidence 99997554211 112345689999999999999999999999999999999987 7999999999
Q ss_pred HHHHHHHHHHhCCCeecCCeeEEEEEEeeC
Q 013047 180 HEAAVACINAINNKEFSDGNSKVKLRARLS 209 (450)
Q Consensus 180 ~e~A~~Ai~~l~g~~~~g~~i~v~v~~~~~ 209 (450)
.|+|..||..||+++|.|..++|.+-+...
T Consensus 210 kEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 210 KEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred hhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 999999999999999999988888765433
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1.8e-27 Score=255.01 Aligned_cols=197 Identities=18% Similarity=0.299 Sum_probs=166.8
Q ss_pred HHHHHhhCCCcccCCcccccC-----------CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCC
Q 013047 5 FLIYILIFPLKQICGKRCGTA-----------PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGL 73 (450)
Q Consensus 5 ~~~~le~~~~~~~~~k~~~~~-----------~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~ 73 (450)
...+|+.+++..+.++.+.+. .....++|||+||+.++|+++|+++|+.||+ |++|+|+.+. ++.
T Consensus 142 A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~--i~~~~i~~~~--~g~ 217 (562)
T TIGR01628 142 AKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE--ITSAAVMKDG--SGR 217 (562)
T ss_pred HHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC--EEEEEEEECC--CCC
Confidence 456777777777777777542 2234578999999999999999999999999 9999999985 789
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCCCCcc-------------ccCCccEEEEcCCCCCc
Q 013047 74 SRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE-------------IMAHVKTVFLDGVPPHW 140 (450)
Q Consensus 74 skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~~~~~-------------~~~~~~~lfV~nLp~~~ 140 (450)
++|||||+|++.++|++|++.|++..+.....++.|.|.++..+.+.... ......+|||+||++++
T Consensus 218 ~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~ 297 (562)
T TIGR01628 218 SRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTV 297 (562)
T ss_pred cccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCcc
Confidence 99999999999999999999999998733333788999888665443111 12345689999999999
Q ss_pred hhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 141 KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 141 te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
|+++|+++|++||.|++|.|+.+ .++.++|||||+|++.++|++||.+||++.|.++.|.|.+..
T Consensus 298 ~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 298 TDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred CHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 99999999999999999999999 688999999999999999999999999999999987776643
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=3.2e-27 Score=252.96 Aligned_cols=192 Identities=18% Similarity=0.336 Sum_probs=167.4
Q ss_pred hhHHHHHhhCCCcccCCcccccCCCCC--------CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCe
Q 013047 3 QLFLIYILIFPLKQICGKRCGTAPSED--------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 74 (450)
Q Consensus 3 ~~~~~~le~~~~~~~~~k~~~~~~~~~--------~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~s 74 (450)
+-.+.+|+.++...+.++.+.+.++.. .++|||+|||.++|+++|+++|++||. |++|+|+.+. ++++
T Consensus 53 ~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~--i~~~~i~~~~--~g~s 128 (562)
T TIGR01628 53 ADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGN--ILSCKVATDE--NGKS 128 (562)
T ss_pred HHHHHHHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCC--cceeEeeecC--CCCc
Confidence 345778889999999999999987642 467999999999999999999999999 9999999985 7889
Q ss_pred eeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCc
Q 013047 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGD 154 (450)
Q Consensus 75 kG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~ 154 (450)
+|||||+|++.++|++|+++|++..+ .++.|.|.....+.+.........++|||+||+.++|+++|+++|++||.
T Consensus 129 kg~afV~F~~~e~A~~Ai~~lng~~~----~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~ 204 (562)
T TIGR01628 129 RGYGFVHFEKEESAKAAIQKVNGMLL----NDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE 204 (562)
T ss_pred ccEEEEEECCHHHHHHHHHHhcccEe----cCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC
Confidence 99999999999999999999999876 58889987765554443333445678999999999999999999999999
Q ss_pred eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeec----CCeeEEE
Q 013047 155 VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS----DGNSKVK 203 (450)
Q Consensus 155 v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~----g~~i~v~ 203 (450)
|+.|.|+.+. +++++|||||+|++.++|.+|++.|++..|. +..+.|.
T Consensus 205 i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 205 ITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred EEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 9999999884 6889999999999999999999999999998 7665443
No 12
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=2.8e-27 Score=216.83 Aligned_cols=171 Identities=21% Similarity=0.370 Sum_probs=157.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
.+..+.|.|.-||.++|+|+|+.+|...|+ |++|+|++|+. +|++.||+||.|.+++||++||..||+..+ +.
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGe--iEScKLvRDKi-tGqSLGYGFVNYv~p~DAe~AintlNGLrL----Q~ 110 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGE--IESCKLVRDKI-TGQSLGYGFVNYVRPKDAEKAINTLNGLRL----QN 110 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccc--eeeeeeeeccc-cccccccceeeecChHHHHHHHhhhcceee----cc
Confidence 455678999999999999999999999999 99999999998 999999999999999999999999999887 79
Q ss_pred ceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 013047 107 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 186 (450)
Q Consensus 107 r~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~A 186 (450)
++|+|.+|+|....- +...|||++||..+|.+||+++|++||.|..-+|+.|..|+.++|.+||.|+..++|++|
T Consensus 111 KTIKVSyARPSs~~I-----k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~A 185 (360)
T KOG0145|consen 111 KTIKVSYARPSSDSI-----KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEA 185 (360)
T ss_pred ceEEEEeccCChhhh-----cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHH
Confidence 999999998866532 456899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeecCCeeEEEEEEeeC
Q 013047 187 INAINNKEFSDGNSKVKLRARLS 209 (450)
Q Consensus 187 i~~l~g~~~~g~~i~v~v~~~~~ 209 (450)
|..|||+.-.+..-.|+|+.+..
T Consensus 186 Ik~lNG~~P~g~tepItVKFann 208 (360)
T KOG0145|consen 186 IKGLNGQKPSGCTEPITVKFANN 208 (360)
T ss_pred HHhccCCCCCCCCCCeEEEecCC
Confidence 99999999988877777766543
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=1.9e-25 Score=236.61 Aligned_cols=168 Identities=21% Similarity=0.337 Sum_probs=140.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceE
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 109 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i 109 (450)
.++|||+|||.++|+++|+++|++||. |+.|.|+.+.. +|.++|||||+|.+.++|+.||+.|++..| .++.|
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~--i~~~~~~~~~~-~g~~~g~afv~f~~~~~a~~A~~~l~g~~~----~~~~l 367 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGD--LKAFNLIKDIA-TGLSKGYAFCEYKDPSVTDVAIAALNGKDT----GDNKL 367 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEEecCC-CCCcCeEEEEEECCHHHHHHHHHHcCCCEE----CCeEE
Confidence 579999999999999999999999999 99999999875 899999999999999999999999999987 48899
Q ss_pred EEeecCCCCCCCc----c-------------------ccCCccEEEEcCCCCC----------chhHHHHHhhhccCceE
Q 013047 110 KVAFAEPLREPDP----E-------------------IMAHVKTVFLDGVPPH----------WKENQIRDQIKGYGDVI 156 (450)
Q Consensus 110 ~v~~a~~~~~~~~----~-------------------~~~~~~~lfV~nLp~~----------~te~dL~~~F~~~G~v~ 156 (450)
.|.++........ . ....+++|+|.||... ...++|+++|++||.|+
T Consensus 368 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~ 447 (509)
T TIGR01642 368 HVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLI 447 (509)
T ss_pred EEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCee
Confidence 9998753221100 0 0124578899998542 13478999999999999
Q ss_pred EEEEEecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 157 RIVLARNM---STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 157 ~v~i~~d~---~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
.|.|+.+. .+....|++||+|++.++|++||++|||.+|.|+.|.|.+
T Consensus 448 ~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~ 498 (509)
T TIGR01642 448 NIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAF 498 (509)
T ss_pred EEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 99998652 3455679999999999999999999999999999876655
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.94 E-value=9.5e-26 Score=236.61 Aligned_cols=160 Identities=21% Similarity=0.385 Sum_probs=133.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
...++|||+|||++++|++|+++|++||+ |.+|+|++|. +++++|||||+|.+.++|++||+.||+.++. .++
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~--I~~vrl~~D~--sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~---~Gr 128 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGP--IYELRLMMDF--SGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR---PGR 128 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCC--EEEEEEEECC--CCCccceEEEEeCCHHHHHHHHHHcCCCeec---CCc
Confidence 44689999999999999999999999999 9999999993 8999999999999999999999999998773 356
Q ss_pred eEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCc-eEEEEEEe-cCCCCCcceEEEEEeCCHHHHHH
Q 013047 108 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGD-VIRIVLAR-NMSTAKRKDYGFIDFSTHEAAVA 185 (450)
Q Consensus 108 ~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~-v~~v~i~~-d~~~g~~rG~afV~F~s~e~A~~ 185 (450)
.|.|.++. ..++|||+|||+++++++|+++|++++. |+.+.+.. ....+++++||||+|+++++|++
T Consensus 129 ~l~V~~S~-----------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~ 197 (578)
T TIGR01648 129 LLGVCISV-----------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAM 197 (578)
T ss_pred cccccccc-----------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHH
Confidence 67666542 3478999999999999999999999964 44443332 23456789999999999999999
Q ss_pred HHHHhCCC--eecCCeeEEEEE
Q 013047 186 CINAINNK--EFSDGNSKVKLR 205 (450)
Q Consensus 186 Ai~~l~g~--~~~g~~i~v~v~ 205 (450)
|+++|+.. .+.++.|.|.+.
T Consensus 198 AirkL~~gki~l~Gr~I~VdwA 219 (578)
T TIGR01648 198 ARRKLMPGRIQLWGHVIAVDWA 219 (578)
T ss_pred HHHHhhccceEecCceEEEEee
Confidence 99988643 466777666654
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=2.4e-25 Score=235.83 Aligned_cols=168 Identities=20% Similarity=0.367 Sum_probs=135.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCC----------CCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGV----------EGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 96 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~----------~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~ 96 (450)
+...++|||+|||+++|+++|++||++++. ..|..|.+. ..+|||||+|.+.++|++|| +|+
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-------~~kg~afVeF~~~e~A~~Al-~l~ 243 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-------KEKNFAFLEFRTVEEATFAM-ALD 243 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-------CCCCEEEEEeCCHHHHhhhh-cCC
Confidence 445789999999999999999999998621 013344333 35699999999999999999 599
Q ss_pred CCCcccCCCCceEEEeecCCCCC----------CC--------------ccccCCccEEEEcCCCCCchhHHHHHhhhcc
Q 013047 97 KPDVVFGHPERTVKVAFAEPLRE----------PD--------------PEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152 (450)
Q Consensus 97 ~~~~~~g~~gr~i~v~~a~~~~~----------~~--------------~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~ 152 (450)
+..+ .++.|+|........ .. .......++|||+|||+.+++++|+++|++|
T Consensus 244 g~~~----~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~ 319 (509)
T TIGR01642 244 SIIY----SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESF 319 (509)
T ss_pred CeEe----eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 9866 478888875432110 00 0012234789999999999999999999999
Q ss_pred CceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 153 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 153 G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
|.|+.|.|+.+..++.++|||||+|++.++|++||+.||+..|.++.|.|.+..
T Consensus 320 G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 320 GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 999999999999999999999999999999999999999999999987666543
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=4.7e-25 Score=231.52 Aligned_cols=153 Identities=15% Similarity=0.161 Sum_probs=130.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHh--CCCCcccCCCCc
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPER 107 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l--~~~~~~~g~~gr 107 (450)
+++|||+|||+++|+++|+++|++||. |++|+|+++ |+||||+|++.++|++||+.| +...+ .++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~--V~~v~i~~~-------k~~afVef~~~e~A~~Ai~~~~~~~~~l----~g~ 68 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGP--VSYVMMLPG-------KRQALVEFEDEESAKACVNFATSVPIYI----RGQ 68 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCC--eeEEEEECC-------CCEEEEEeCchHHHHHHHHHhhcCCceE----cCe
Confidence 689999999999999999999999999 999999964 489999999999999999975 44444 489
Q ss_pred eEEEeecCCCCCCCcc-------ccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCH
Q 013047 108 TVKVAFAEPLREPDPE-------IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH 180 (450)
Q Consensus 108 ~i~v~~a~~~~~~~~~-------~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~ 180 (450)
.|.|.|+..+...... ......+|+|.||++++|+++|+++|++||.|+.|.|+.+. .+++|||+|++.
T Consensus 69 ~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~ 144 (481)
T TIGR01649 69 PAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESV 144 (481)
T ss_pred EEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCH
Confidence 9999998654322111 11233579999999999999999999999999999998763 246899999999
Q ss_pred HHHHHHHHHhCCCeecCCe
Q 013047 181 EAAVACINAINNKEFSDGN 199 (450)
Q Consensus 181 e~A~~Ai~~l~g~~~~g~~ 199 (450)
++|.+|++.|||++|.++.
T Consensus 145 ~~A~~A~~~Lng~~i~~~~ 163 (481)
T TIGR01649 145 NSAQHAKAALNGADIYNGC 163 (481)
T ss_pred HHHHHHHHHhcCCcccCCc
Confidence 9999999999999998764
No 17
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=3.2e-25 Score=216.97 Aligned_cols=159 Identities=20% Similarity=0.373 Sum_probs=138.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceE
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 109 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i 109 (450)
-+-|||+.||.++.|++|.-+|++.|+ |.+++||+|+. +|.+||||||+|.++++|++||+.||..+|. .++.|
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~--I~elRLMmD~~-sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir---~GK~i 156 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGK--IYELRLMMDPF-SGDNRGYAFVTFCTKEEAQEAIKELNNYEIR---PGKLL 156 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccc--eeeEEEeeccc-CCCCcceEEEEeecHHHHHHHHHHhhCcccc---CCCEe
Confidence 578999999999999999999999999 99999999987 9999999999999999999999999999997 57899
Q ss_pred EEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCc-eEEEEEEecCC-CCCcceEEEEEeCCHHHHHHHH
Q 013047 110 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGD-VIRIVLARNMS-TAKRKDYGFIDFSTHEAAVACI 187 (450)
Q Consensus 110 ~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~-v~~v~i~~d~~-~g~~rG~afV~F~s~e~A~~Ai 187 (450)
.|..+. ..++|||+|+|.++++++|++.|++.++ |+.|.|..... ..++||||||+|+++..|..|.
T Consensus 157 gvc~Sv-----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aR 225 (506)
T KOG0117|consen 157 GVCVSV-----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMAR 225 (506)
T ss_pred EEEEee-----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHH
Confidence 887653 5689999999999999999999999976 66666665543 4578999999999999999999
Q ss_pred HHhCCCee--cCCeeEEEEE
Q 013047 188 NAINNKEF--SDGNSKVKLR 205 (450)
Q Consensus 188 ~~l~g~~~--~g~~i~v~v~ 205 (450)
.+|-...| .+..+.|.|+
T Consensus 226 rKl~~g~~klwgn~~tVdWA 245 (506)
T KOG0117|consen 226 RKLMPGKIKLWGNAITVDWA 245 (506)
T ss_pred hhccCCceeecCCcceeecc
Confidence 88765544 4665555553
No 18
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=2.1e-25 Score=195.11 Aligned_cols=169 Identities=23% Similarity=0.369 Sum_probs=150.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
....||||+||+..++++-|.|+|-+.|+ |.+|+|.+|.. +...+|||||||.++|||+-|++.||...+ .++
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagp--Vv~i~iPkDrv-~~~~qGygF~Ef~~eedadYAikiln~VkL----Ygr 79 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGP--VVNLHIPKDRV-TQKHQGYGFAEFRTEEDADYAIKILNMVKL----YGR 79 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCc--eeeeecchhhh-cccccceeEEEEechhhhHHHHHHHHHHHh----cCc
Confidence 34679999999999999999999999999 99999999976 888999999999999999999999997776 489
Q ss_pred eEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEE-EEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 013047 108 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR-IVLARNMSTAKRKDYGFIDFSTHEAAVAC 186 (450)
Q Consensus 108 ~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~-v~i~~d~~~g~~rG~afV~F~s~e~A~~A 186 (450)
+|+|..+.... .......+|||+||.++++|..|.+.|++||.|.. -+|+.+..|+.+++|+||.|++.|.+.+|
T Consensus 80 pIrv~kas~~~----~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~a 155 (203)
T KOG0131|consen 80 PIRVNKASAHQ----KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAA 155 (203)
T ss_pred eeEEEeccccc----ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHH
Confidence 99999887222 22334579999999999999999999999998764 48899999999999999999999999999
Q ss_pred HHHhCCCeecCCeeEEEEEEe
Q 013047 187 INAINNKEFSDGNSKVKLRAR 207 (450)
Q Consensus 187 i~~l~g~~~~g~~i~v~v~~~ 207 (450)
|+.||++.+..+.++|.....
T Consensus 156 i~s~ngq~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 156 IGSMNGQYLCNRPITVSYAFK 176 (203)
T ss_pred HHHhccchhcCCceEEEEEEe
Confidence 999999999999877777654
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=1.1e-24 Score=228.73 Aligned_cols=168 Identities=17% Similarity=0.292 Sum_probs=137.8
Q ss_pred CCCeEEEcCCCC-CCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 29 DNDTLFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 29 ~~~~lyV~nLp~-~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
.+++|||+||++ .+|+++|+++|+.||. |++|+|+.++ +|||||+|.+.++|++||+.||+..+ .++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~--V~~vki~~~~------~g~afV~f~~~~~A~~Ai~~lng~~l----~g~ 341 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGN--VERVKFMKNK------KETALIEMADPYQAQLALTHLNGVKL----FGK 341 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCC--eEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEE----CCc
Confidence 567999999998 6999999999999999 9999999863 49999999999999999999999987 589
Q ss_pred eEEEeecCCCCCCCc--------------------------------cccCCccEEEEcCCCCCchhHHHHHhhhccCc-
Q 013047 108 TVKVAFAEPLREPDP--------------------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGD- 154 (450)
Q Consensus 108 ~i~v~~a~~~~~~~~--------------------------------~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~- 154 (450)
.|+|.++..+..... ....++++|||+|||++++|++|+++|++||.
T Consensus 342 ~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~ 421 (481)
T TIGR01649 342 PLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVH 421 (481)
T ss_pred eEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCc
Confidence 999998754311000 00124578999999999999999999999998
Q ss_pred -eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCe--eEEEEEEeeCC
Q 013047 155 -VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN--SKVKLRARLSN 210 (450)
Q Consensus 155 -v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~--i~v~v~~~~~~ 210 (450)
|+.|++.... + .++++|||+|++.++|.+||.+||+++|.++. ....|+++.++
T Consensus 422 ~i~~ik~~~~~-~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~ 478 (481)
T TIGR01649 422 KVKKFKFFPKD-N-ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFST 478 (481)
T ss_pred cceEEEEecCC-C-CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEecc
Confidence 7888876543 2 35789999999999999999999999999875 22334444443
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.8e-24 Score=197.14 Aligned_cols=197 Identities=21% Similarity=0.319 Sum_probs=162.1
Q ss_pred HHHHhhCCCcccCCcccccC------CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEE
Q 013047 6 LIYILIFPLKQICGKRCGTA------PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAF 79 (450)
Q Consensus 6 ~~~le~~~~~~~~~k~~~~~------~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aF 79 (450)
+.+|..++.-.+-.|.+++. .+.....|||.+||+++|.+||+++|++||. |+.-+|+.|.. ||.+||-+|
T Consensus 97 e~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr--IItSRiL~dqv-tg~srGVgF 173 (360)
T KOG0145|consen 97 EKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR--IITSRILVDQV-TGLSRGVGF 173 (360)
T ss_pred HHHHhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhh--hhhhhhhhhcc-cceecceeE
Confidence 34455555444445555442 2344678999999999999999999999998 88888888876 899999999
Q ss_pred EEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCCCCcc------------------------------------
Q 013047 80 VMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE------------------------------------ 123 (450)
Q Consensus 80 VeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~~~~~------------------------------------ 123 (450)
|.|...++|+.||+.||+..- .+ ...+|.|++|.........
T Consensus 174 iRFDKr~EAe~AIk~lNG~~P-~g-~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~ 251 (360)
T KOG0145|consen 174 IRFDKRIEAEEAIKGLNGQKP-SG-CTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAA 251 (360)
T ss_pred EEecchhHHHHHHHhccCCCC-CC-CCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhh
Confidence 999999999999999999864 23 3678999988532211000
Q ss_pred ----------------------ccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHH
Q 013047 124 ----------------------IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 181 (450)
Q Consensus 124 ----------------------~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e 181 (450)
......+|||=||..+++|.-|.++|..||.|..|+|++|..|++.+||+||++.+-+
T Consensus 252 ~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYd 331 (360)
T KOG0145|consen 252 QARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYD 331 (360)
T ss_pred hccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchH
Confidence 0111268999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeecCCeeEEEEEEe
Q 013047 182 AAVACINAINNKEFSDGNSKVKLRAR 207 (450)
Q Consensus 182 ~A~~Ai~~l~g~~~~g~~i~v~v~~~ 207 (450)
+|..||..|||..+.++.++|.++..
T Consensus 332 EAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 332 EAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred HHHHHHHHhcCccccceEEEEEEecC
Confidence 99999999999999999988887653
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=2.3e-23 Score=217.82 Aligned_cols=165 Identities=22% Similarity=0.379 Sum_probs=137.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceE
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 109 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i 109 (450)
.++|||+|||.++|+++|+++|++||. |+.|.|+.++. +++++|||||+|.+.++|++||+.|++..| .++.|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~--i~~v~~~~d~~-~g~~~g~afV~f~~~e~A~~A~~~l~g~~i----~g~~i 258 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGD--IEDVQLHRDPE-TGRSKGFGFIQFHDAEEAKEALEVMNGFEL----AGRPI 258 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCC--eEEEEEEEcCC-CCccceEEEEEECCHHHHHHHHHhcCCcEE----CCEEE
Confidence 589999999999999999999999999 99999999876 789999999999999999999999999776 58999
Q ss_pred EEeecCCCCCC-----------------------------------C------------------------------c--
Q 013047 110 KVAFAEPLREP-----------------------------------D------------------------------P-- 122 (450)
Q Consensus 110 ~v~~a~~~~~~-----------------------------------~------------------------------~-- 122 (450)
+|.++...... . +
T Consensus 259 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (457)
T TIGR01622 259 KVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSR 338 (457)
T ss_pred EEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccc
Confidence 99995321000 0 0
Q ss_pred ----------------c--ccCCccEEEEcCCCCCch----------hHHHHHhhhccCceEEEEEEecCCCCCcceEEE
Q 013047 123 ----------------E--IMAHVKTVFLDGVPPHWK----------ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 174 (450)
Q Consensus 123 ----------------~--~~~~~~~lfV~nLp~~~t----------e~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~af 174 (450)
. .....++|+|.||-...+ ++||+++|++||.|+.|.|... ...|++|
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~f 414 (457)
T TIGR01622 339 YATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIY 414 (457)
T ss_pred ccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEE
Confidence 0 012346788888844332 4789999999999999988643 4679999
Q ss_pred EEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 175 IDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 175 V~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
|+|+++++|++|++.|||..|.|+.|.+...
T Consensus 415 V~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~ 445 (457)
T TIGR01622 415 LKFSSVDAALAAFQALNGRYFGGKMITAAFV 445 (457)
T ss_pred EEECCHHHHHHHHHHhcCcccCCeEEEEEEE
Confidence 9999999999999999999999998777654
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.5e-23 Score=209.41 Aligned_cols=170 Identities=25% Similarity=0.357 Sum_probs=145.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceE
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 109 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i 109 (450)
.-+|.|+||||.|.+.+|+.+|+.||. |.+|.|.+.. .+...|||||.|.+..+|++||+.+|+..| .+++|
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~--V~Ei~IP~k~--dgklcGFaFV~fk~~~dA~~Al~~~N~~~i----~gR~V 188 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGK--VVEIVIPRKK--DGKLCGFAFVQFKEKKDAEKALEFFNGNKI----DGRPV 188 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcce--EEEEEcccCC--CCCccceEEEEEeeHHHHHHHHHhccCcee----cCcee
Confidence 458999999999999999999999999 9999999765 455669999999999999999999999988 69999
Q ss_pred EEeecCCCCCCC-----------------------------------------cc--c----------------------
Q 013047 110 KVAFAEPLREPD-----------------------------------------PE--I---------------------- 124 (450)
Q Consensus 110 ~v~~a~~~~~~~-----------------------------------------~~--~---------------------- 124 (450)
-|+||.++..-. .+ .
T Consensus 189 AVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~ 268 (678)
T KOG0127|consen 189 AVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDE 268 (678)
T ss_pred EEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccc
Confidence 999986432100 00 0
Q ss_pred ------------c----C----CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 013047 125 ------------M----A----HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 184 (450)
Q Consensus 125 ------------~----~----~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~ 184 (450)
. . ..++|||.|||+++||++|.+.|++||+|..+.|+.++.|+.++|.|||.|.+..+|+
T Consensus 269 e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~ 348 (678)
T KOG0127|consen 269 ESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQ 348 (678)
T ss_pred cccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHH
Confidence 0 0 0168999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-----CC-CeecCCeeEEEEEEe
Q 013047 185 ACINAI-----NN-KEFSDGNSKVKLRAR 207 (450)
Q Consensus 185 ~Ai~~l-----~g-~~~~g~~i~v~v~~~ 207 (450)
+||++. .+ ..|+|+.++|...+.
T Consensus 349 ~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 349 NCIEAASPASEDGSVLLDGRLLKVTLAVT 377 (678)
T ss_pred HHHHhcCccCCCceEEEeccEEeeeeccc
Confidence 999876 23 567888888777653
No 23
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=1.9e-24 Score=201.30 Aligned_cols=151 Identities=22% Similarity=0.426 Sum_probs=138.5
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEE
Q 013047 31 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 110 (450)
Q Consensus 31 ~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~ 110 (450)
.+|||+|||.++++.+|+.+|++||+ |.+|.|+++ |+||..+++..|+.||..|++..+ ++..|+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygk--VlECDIvKN---------YgFVHiEdktaaedairNLhgYtL----hg~nIn 67 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGK--VLECDIVKN---------YGFVHIEDKTAAEDAIRNLHGYTL----HGVNIN 67 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCc--eEeeeeecc---------cceEEeecccccHHHHhhccccee----cceEEE
Confidence 47999999999999999999999999 999999974 999999999999999999999988 699999
Q ss_pred EeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 013047 111 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190 (450)
Q Consensus 111 v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l 190 (450)
|+.++.|.+ .+.+|+|+||.+.++.++|++.|++||.|++|+|+++ ++||.|+-.++|..||..|
T Consensus 68 VeaSksKsk-------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l 132 (346)
T KOG0109|consen 68 VEASKSKSK-------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGL 132 (346)
T ss_pred EEeccccCC-------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcc
Confidence 998866532 5679999999999999999999999999999999765 9999999999999999999
Q ss_pred CCCeecCCeeEEEEEEeeCCC
Q 013047 191 NNKEFSDGNSKVKLRARLSNP 211 (450)
Q Consensus 191 ~g~~~~g~~i~v~v~~~~~~~ 211 (450)
|+++|.|+.++|.+....-.+
T Consensus 133 ~~~~~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 133 DNTEFQGKRMHVQLSTSRLRT 153 (346)
T ss_pred cccccccceeeeeeecccccc
Confidence 999999999999887665443
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.8e-23 Score=208.87 Aligned_cols=170 Identities=19% Similarity=0.309 Sum_probs=148.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEE
Q 013047 31 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 110 (450)
Q Consensus 31 ~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~ 110 (450)
.||||++||+++|.++|.++|+.+|+ |..+.++.++. ++.++||+||+|+=.||++.|++..+++.| .++.|.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGP--ik~~~vVt~~g-s~~~RGfgfVtFam~ED~qrA~~e~~~~kf----~Gr~l~ 78 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGP--IKHAVVVTNKG-SSEKRGFGFVTFAMEEDVQRALAETEQSKF----EGRILN 78 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccC--cceeEEecCCC-cccccCccceeeehHhHHHHHHHHhhcCcc----cceecc
Confidence 79999999999999999999999999 99999999875 789999999999999999999999999888 689999
Q ss_pred EeecCCCCCCCcc---------------------ccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCc
Q 013047 111 VAFAEPLREPDPE---------------------IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 169 (450)
Q Consensus 111 v~~a~~~~~~~~~---------------------~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~ 169 (450)
|+.|..+...... ...+..+|.|.||||.+.+.+|+.+|++||.|.+|.|+....+ +-
T Consensus 79 v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dg-kl 157 (678)
T KOG0127|consen 79 VDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDG-KL 157 (678)
T ss_pred cccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCC-Cc
Confidence 9988654332200 0112458999999999999999999999999999999976544 45
Q ss_pred ceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEEee
Q 013047 170 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 208 (450)
Q Consensus 170 rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~~~ 208 (450)
.|||||+|....+|.+||+.||++.|+|+.|-|.|+++-
T Consensus 158 cGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 158 CGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 599999999999999999999999999998777776643
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=3.6e-23 Score=201.82 Aligned_cols=179 Identities=25% Similarity=0.443 Sum_probs=161.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
+.++|||+.|++.+||.||+++|++||. |++|.|++|+ .+.+||||||+|++.|.|..||++||++.-|.| ...+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~--Ied~~ilrd~--~~~sRGcaFV~fstke~A~~Aika~ng~~tmeG-cs~P 197 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGH--IEDCYILRDP--DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEG-CSQP 197 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCc--cchhhheecc--cccccceeEEEEehHHHHHHHHHhhccceeecc-CCCc
Confidence 3679999999999999999999999999 9999999997 799999999999999999999999999998888 4889
Q ss_pred EEEeecCCCCCCCccc----------------------------------------------------------------
Q 013047 109 VKVAFAEPLREPDPEI---------------------------------------------------------------- 124 (450)
Q Consensus 109 i~v~~a~~~~~~~~~~---------------------------------------------------------------- 124 (450)
|.|+||++++.+.-+.
T Consensus 198 LVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~ 277 (510)
T KOG0144|consen 198 LVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQA 277 (510)
T ss_pred eEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHH
Confidence 9999999876542110
Q ss_pred --------------------------------------------------------------------------------
Q 013047 125 -------------------------------------------------------------------------------- 124 (450)
Q Consensus 125 -------------------------------------------------------------------------------- 124 (450)
T Consensus 278 ~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~ 357 (510)
T KOG0144|consen 278 AALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTT 357 (510)
T ss_pred HHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccccccccccccc
Confidence
Q ss_pred ---------------------------------------------------------------cCCccEEEEcCCCCCch
Q 013047 125 ---------------------------------------------------------------MAHVKTVFLDGVPPHWK 141 (450)
Q Consensus 125 ---------------------------------------------------------------~~~~~~lfV~nLp~~~t 141 (450)
-.....|||.+||.+.-
T Consensus 358 sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefg 437 (510)
T KOG0144|consen 358 SPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFG 437 (510)
T ss_pred CcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhh
Confidence 00015799999999999
Q ss_pred hHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEEeeCCCC
Q 013047 142 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPM 212 (450)
Q Consensus 142 e~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~~~~~~~ 212 (450)
+.+|-..|..||.|+..+|..|+.|+-++.|+||.+++..+|.+||..|||..|..+.++|.++++...+.
T Consensus 438 dq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~np~ 508 (510)
T KOG0144|consen 438 DQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNNPY 508 (510)
T ss_pred hHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988766554
No 26
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=3.5e-23 Score=190.61 Aligned_cols=173 Identities=24% Similarity=0.422 Sum_probs=154.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
+.++|||+.|.+.-.|||++.+|..||. |++|++.+.+ .|.+||+|||.|.+..||++||..|+++.-+.| ....
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~--~~e~tvlrg~--dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpG-ASSS 92 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGN--IEECTVLRGP--DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPG-ASSS 92 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCC--cceeEEecCC--CCCCCCceEEEeccchHHHHHHHHhcccccCCC-Cccc
Confidence 5789999999999999999999999999 9999999987 799999999999999999999999999988877 5778
Q ss_pred EEEeecCCCCCCCccc----------------------------------------------------------------
Q 013047 109 VKVAFAEPLREPDPEI---------------------------------------------------------------- 124 (450)
Q Consensus 109 i~v~~a~~~~~~~~~~---------------------------------------------------------------- 124 (450)
|.|++++..+++....
T Consensus 93 LVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~an 172 (371)
T KOG0146|consen 93 LVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNAN 172 (371)
T ss_pred eEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhc
Confidence 8899887655431100
Q ss_pred --------------------------------------------------------------------------------
Q 013047 125 -------------------------------------------------------------------------------- 124 (450)
Q Consensus 125 -------------------------------------------------------------------------------- 124 (450)
T Consensus 173 gl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~ 252 (371)
T KOG0146|consen 173 GLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQ 252 (371)
T ss_pred ccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHH
Confidence
Q ss_pred -----------------------------cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEE
Q 013047 125 -----------------------------MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 175 (450)
Q Consensus 125 -----------------------------~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV 175 (450)
-...+.|||=.||.+..+.||.++|-.||.|++.+|..|+.|+.+|+|+||
T Consensus 253 Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFV 332 (371)
T KOG0146|consen 253 YAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFV 332 (371)
T ss_pred HhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeE
Confidence 001178999999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 176 DFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 176 ~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
.|+++.+|++||.+|||..|.-+.++|.++.
T Consensus 333 SfDNp~SaQaAIqAMNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 333 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 363 (371)
T ss_pred ecCCchhHHHHHHHhcchhhhhhhhhhhhcC
Confidence 9999999999999999999999988777764
No 27
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.89 E-value=8.8e-22 Score=191.71 Aligned_cols=171 Identities=21% Similarity=0.427 Sum_probs=148.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
+..+|||++|+|++|++.|+++|.+||+ |.+|.+|+|+. +++++||+||+|++.+...++|.....+ | .++.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Ge--v~d~~vm~d~~-t~rsrgFgfv~f~~~~~v~~vl~~~~h~-~----dgr~ 76 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGE--VTDCVVMRDPS-TGRSRGFGFVTFATPEGVDAVLNARTHK-L----DGRS 76 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCc--eeeEEEeccCC-CCCcccccceecCCCcchheeecccccc-c----CCcc
Confidence 6889999999999999999999999999 99999999987 8999999999999999999998654433 2 4899
Q ss_pred EEEeecCCCCCCCccc-cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 013047 109 VKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187 (450)
Q Consensus 109 i~v~~a~~~~~~~~~~-~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai 187 (450)
|.++.|.+........ ....++|||++|+..+++++|++.|++||.|..+.++.|..+.+.++|+||+|++++++++++
T Consensus 77 ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~ 156 (311)
T KOG4205|consen 77 VEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT 156 (311)
T ss_pred ccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec
Confidence 9999988776654332 336789999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhCCCeecCCeeEEEEEEeeCC
Q 013047 188 NAINNKEFSDGNSKVKLRARLSN 210 (450)
Q Consensus 188 ~~l~g~~~~g~~i~v~v~~~~~~ 210 (450)
. ..-++|.++. |+|+++..+
T Consensus 157 ~-~~f~~~~gk~--vevkrA~pk 176 (311)
T KOG4205|consen 157 L-QKFHDFNGKK--VEVKRAIPK 176 (311)
T ss_pred c-cceeeecCce--eeEeeccch
Confidence 4 5677788875 555555444
No 28
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.2e-21 Score=197.07 Aligned_cols=188 Identities=19% Similarity=0.356 Sum_probs=164.8
Q ss_pred hHHHHHhhCCCcccCCcccccCCCCC-CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEe
Q 013047 4 LFLIYILIFPLKQICGKRCGTAPSED-NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 82 (450)
Q Consensus 4 ~~~~~le~~~~~~~~~k~~~~~~~~~-~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF 82 (450)
-...+|+.++-.+++++.+.++|++. .+.|||+||+.++|.++|.++|+.||+ |.+|+++++. .| +||| ||+|
T Consensus 49 da~~A~~~~n~~~~~~~~~rim~s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~--ilS~kv~~~~--~g-~kg~-FV~f 122 (369)
T KOG0123|consen 49 DAERALDTMNFDVLKGKPIRIMWSQRDPSLVFIKNLDESIDNKSLYDTFSEFGN--ILSCKVATDE--NG-SKGY-FVQF 122 (369)
T ss_pred HHHHHHHHcCCcccCCcEEEeehhccCCceeeecCCCcccCcHHHHHHHHhhcC--eeEEEEEEcC--CC-ceee-EEEe
Confidence 35678999999999999999999864 556999999999999999999999999 9999999996 45 9999 9999
Q ss_pred CCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCCCCcc---ccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEE
Q 013047 83 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE---IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIV 159 (450)
Q Consensus 83 ~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~~~~~---~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~ 159 (450)
+++++|++||+.+|+..+ .++.|-|.....+.+.... .......++|.+++.+++++.|.++|..+|.|..+.
T Consensus 123 ~~e~~a~~ai~~~ng~ll----~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~ 198 (369)
T KOG0123|consen 123 ESEESAKKAIEKLNGMLL----NGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVA 198 (369)
T ss_pred CCHHHHHHHHHHhcCccc----CCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEE
Confidence 999999999999999877 5889999887766554322 223446799999999999999999999999999999
Q ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 013047 160 LARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202 (450)
Q Consensus 160 i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v 202 (450)
|+.+. .+++++|+||+|+++++|..|++.|++..+.+..+-|
T Consensus 199 v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V 240 (369)
T KOG0123|consen 199 VMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYV 240 (369)
T ss_pred EeecC-CCCCCCccceeecChhHHHHHHHhccCCcCCccceee
Confidence 99985 5568999999999999999999999999998765433
No 29
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=7.4e-22 Score=188.71 Aligned_cols=171 Identities=21% Similarity=0.414 Sum_probs=149.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceE
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 109 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i 109 (450)
-++|||+.|.+.+.|+.|+..|..||+ |++|.|-+|+. |+++||||||||+-.|.|+.|++.||+..+ .++.|
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGP--IKSInMSWDp~-T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml----GGRNi 185 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGP--IKSINMSWDPA-TGKHKGFAFVEYEVPEAAQLALEQMNGQML----GGRNI 185 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCC--cceeecccccc-cccccceEEEEEeCcHHHHHHHHHhccccc----cCccc
Confidence 368999999999999999999999999 99999999998 999999999999999999999999999754 48999
Q ss_pred EEeecCCCCCCCcc------ccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHH
Q 013047 110 KVAFAEPLREPDPE------IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183 (450)
Q Consensus 110 ~v~~a~~~~~~~~~------~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A 183 (450)
+|.........++- ...+-++|||..+..+.+|+||+.+|+.||+|+.|.+..+++++..+||+||+|++..+.
T Consensus 186 KVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 186 KVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred cccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccch
Confidence 99854332222211 122457999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeecCCeeEEEEEEe
Q 013047 184 VACINAINNKEFSDGNSKVKLRAR 207 (450)
Q Consensus 184 ~~Ai~~l~g~~~~g~~i~v~v~~~ 207 (450)
..||..||=..+.|.-++|--.+.
T Consensus 266 ~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 266 SEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred HHHhhhcchhhcccceEecccccC
Confidence 999999999999888766544443
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.4e-20 Score=189.29 Aligned_cols=149 Identities=21% Similarity=0.371 Sum_probs=136.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEE
Q 013047 31 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 110 (450)
Q Consensus 31 ~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~ 110 (450)
..|||+ +++|+.+|.++|+..|+ |.+|+|.+|. | +.|||||.|.+.+||++||++||...+ ++++|+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~--v~s~rvc~d~--t--slgy~yvnf~~~~da~~A~~~~n~~~~----~~~~~r 68 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGP--VLSIRVCRDA--T--SLGYAYVNFQQPADAERALDTMNFDVL----KGKPIR 68 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCC--ceeEEEeecC--C--ccceEEEecCCHHHHHHHHHHcCCccc----CCcEEE
Confidence 368998 99999999999999999 9999999994 4 999999999999999999999999887 699999
Q ss_pred EeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 013047 111 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190 (450)
Q Consensus 111 v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l 190 (450)
|.|+..... .|||.||+..++.++|.++|+.||.|++|+|+.+... ++|+ ||+|+++++|++||+.|
T Consensus 69 im~s~rd~~----------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~~a~~ai~~~ 135 (369)
T KOG0123|consen 69 IMWSQRDPS----------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEESAKKAIEKL 135 (369)
T ss_pred eehhccCCc----------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHHHHHHHHHHh
Confidence 999864332 2999999999999999999999999999999999644 9999 99999999999999999
Q ss_pred CCCeecCCeeEEEEE
Q 013047 191 NNKEFSDGNSKVKLR 205 (450)
Q Consensus 191 ~g~~~~g~~i~v~v~ 205 (450)
||..+.++.|.|-+.
T Consensus 136 ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 136 NGMLLNGKKIYVGLF 150 (369)
T ss_pred cCcccCCCeeEEeec
Confidence 999999998766554
No 31
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.85 E-value=7.5e-21 Score=195.96 Aligned_cols=171 Identities=20% Similarity=0.323 Sum_probs=144.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCC--CCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 31 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ--HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 31 ~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~--~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
++|||.||.+++|.++|..+|...|. |.+|.|...+. +.-.|+|||||||.+.++|+.|++.|+++.+ ++..
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~--VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl----dGH~ 589 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGT--VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL----DGHK 589 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCe--EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee----cCce
Confidence 44999999999999999999999998 99998876543 2235779999999999999999999999887 7899
Q ss_pred EEEeecCCCCCCC----ccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 013047 109 VKVAFAEPLREPD----PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 184 (450)
Q Consensus 109 i~v~~a~~~~~~~----~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~ 184 (450)
|.|+++..+.... .....+..+|+|.|||++++..+|+++|..||.|..|.|+.....+..+|||||+|-++++|.
T Consensus 590 l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~ 669 (725)
T KOG0110|consen 590 LELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAK 669 (725)
T ss_pred EEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHH
Confidence 9999987222211 111223468999999999999999999999999999999987555567999999999999999
Q ss_pred HHHHHhCCCeecCCeeEEEEEEe
Q 013047 185 ACINAINNKEFSDGNSKVKLRAR 207 (450)
Q Consensus 185 ~Ai~~l~g~~~~g~~i~v~v~~~ 207 (450)
+|+++|..+.|-|+.+.++++..
T Consensus 670 nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 670 NAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred HHHHhhcccceechhhheehhcc
Confidence 99999999999999887777543
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=7.2e-21 Score=175.95 Aligned_cols=138 Identities=25% Similarity=0.428 Sum_probs=115.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
+++.+||||+||..++||+-|..||++.|. |+++||+.|.
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~--v~~~k~i~~e-------------------------------------- 42 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGS--VTKTKVIFDE-------------------------------------- 42 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccc--cccceeehhh--------------------------------------
Confidence 567899999999999999999999999999 9999999752
Q ss_pred ceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 013047 107 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 186 (450)
Q Consensus 107 r~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~A 186 (450)
|+|.|+.....+..........|||+.|..+++-++|++.|.+||+|.+++|++|..|+++|||+||.|-+.++|+.|
T Consensus 43 --~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnA 120 (321)
T KOG0148|consen 43 --LKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENA 120 (321)
T ss_pred --hccccccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHH
Confidence 223333222111111122345799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeecCCeeEEEEEE
Q 013047 187 INAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 187 i~~l~g~~~~g~~i~v~v~~ 206 (450)
|+.|||++|..+.|+..+..
T Consensus 121 I~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 121 IQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred HHHhCCeeeccceeeccccc
Confidence 99999999999987766654
No 33
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.84 E-value=2.9e-19 Score=188.15 Aligned_cols=106 Identities=10% Similarity=0.186 Sum_probs=91.6
Q ss_pred hhHHHHHhhCCCcccCCcccccCCCC-----------------CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEE
Q 013047 3 QLFLIYILIFPLKQICGKRCGTAPSE-----------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 65 (450)
Q Consensus 3 ~~~~~~le~~~~~~~~~k~~~~~~~~-----------------~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~ 65 (450)
+-...+|+.++...+.++.+.+.... ..++|||+||+.++++++|+++|+.||. |++|+|+
T Consensus 160 e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~--I~svrl~ 237 (612)
T TIGR01645 160 EAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE--IVKCQLA 237 (612)
T ss_pred HHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC--eeEEEEE
Confidence 34567888888888888888764321 2468999999999999999999999999 9999999
Q ss_pred eCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecC
Q 013047 66 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 115 (450)
Q Consensus 66 ~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~ 115 (450)
+|+. ++.+||||||+|++.++|++||+.||+.++ .++.|+|.++.
T Consensus 238 ~D~~-tgksKGfGFVeFe~~e~A~kAI~amNg~el----gGr~LrV~kAi 282 (612)
T TIGR01645 238 RAPT-GRGHKGYGFIEYNNLQSQSEAIASMNLFDL----GGQYLRVGKCV 282 (612)
T ss_pred ecCC-CCCcCCeEEEEECCHHHHHHHHHHhCCCee----CCeEEEEEecC
Confidence 9976 889999999999999999999999999877 58888887654
No 34
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=2.3e-19 Score=157.44 Aligned_cols=164 Identities=21% Similarity=0.350 Sum_probs=136.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
...+++|||+|||.++.+.+|+++|.+||. |.+|.|..-+ ....||||||++..||+.||..-++.++ .+
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~--i~~ieLK~r~----g~ppfafVeFEd~RDAeDAiygRdGYdy----dg 72 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGR--IREIELKNRP----GPPPFAFVEFEDPRDAEDAIYGRDGYDY----DG 72 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcc--eEEEEeccCC----CCCCeeEEEecCccchhhhhhccccccc----Cc
Confidence 345789999999999999999999999999 9999998643 2347999999999999999999999888 68
Q ss_pred ceEEEeecCCCCCCC---------------------ccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCC
Q 013047 107 RTVKVAFAEPLREPD---------------------PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 165 (450)
Q Consensus 107 r~i~v~~a~~~~~~~---------------------~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~ 165 (450)
..|+|+++..-.... +........|.|.+||...+|+||++...+-|+|-...+.+|
T Consensus 73 ~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-- 150 (241)
T KOG0105|consen 73 CRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-- 150 (241)
T ss_pred ceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc--
Confidence 999999986543211 112334568999999999999999999999999998888776
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEEe
Q 013047 166 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 207 (450)
Q Consensus 166 ~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~~ 207 (450)
+.+.|+|...|+.+-||.+|+.+.+.--..++-+.+.
T Consensus 151 -----g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~ 187 (241)
T KOG0105|consen 151 -----GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVR 187 (241)
T ss_pred -----cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEec
Confidence 4799999999999999999998887654444444443
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.82 E-value=1.4e-20 Score=189.29 Aligned_cols=177 Identities=18% Similarity=0.325 Sum_probs=152.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
++.+.+|||+-.|...++.-+|.+||+..|+ |.+|.||.|.. ++.+||.|+|||.+.+.+..|| +|.+..++
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gk--VrdVriI~Dr~-s~rskgi~Yvef~D~~sVp~ai-aLsGqrll---- 246 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGK--VRDVRIIGDRN-SRRSKGIAYVEFCDEQSVPLAI-ALSGQRLL---- 246 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcC--cceeEeecccc-chhhcceeEEEEecccchhhHh-hhcCCccc----
Confidence 4456789999999999999999999999999 99999999977 8999999999999999999999 68888774
Q ss_pred CceEEEeecCCCCCCCcc---------ccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEE
Q 013047 106 ERTVKVAFAEPLREPDPE---------IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 176 (450)
Q Consensus 106 gr~i~v~~a~~~~~~~~~---------~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~ 176 (450)
+.+|.|+..+..+..... ...+-..|+|+||..++++++|+.+|+.||.|+.|.++.|.+||.++||+||+
T Consensus 247 g~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~ 326 (549)
T KOG0147|consen 247 GVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFIT 326 (549)
T ss_pred CceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEE
Confidence 889999876543322110 01122348999999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhCCCeecCCeeEEEEEEeeCC
Q 013047 177 FSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 210 (450)
Q Consensus 177 F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~~~~~ 210 (450)
|.+.++|++|+++|||.+|-|+.|+|.+......
T Consensus 327 f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 327 FVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred EecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 9999999999999999999999999877655433
No 36
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=3.1e-18 Score=150.78 Aligned_cols=87 Identities=21% Similarity=0.402 Sum_probs=78.1
Q ss_pred CCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCC
Q 013047 119 EPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198 (450)
Q Consensus 119 ~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~ 198 (450)
..........++|||+||+++++|++|+++|++||.|+.|.|+.+..++++++||||+|++.++|++||+.||+++|+++
T Consensus 25 ~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr 104 (144)
T PLN03134 25 SMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGR 104 (144)
T ss_pred cccccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 33344445678999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeEEEEE
Q 013047 199 NSKVKLR 205 (450)
Q Consensus 199 ~i~v~v~ 205 (450)
.|+|.+.
T Consensus 105 ~l~V~~a 111 (144)
T PLN03134 105 HIRVNPA 111 (144)
T ss_pred EEEEEeC
Confidence 7666654
No 37
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.78 E-value=4e-18 Score=169.69 Aligned_cols=161 Identities=20% Similarity=0.286 Sum_probs=124.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
+...|-|++|||+||++||++||+.++ |+++.+.+. +|+..|-|||||+++||+++|+|+ +...+ ..+-
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~---I~~~~~~r~---~Gr~sGeA~Ve~~seedv~~Alkk-dR~~m----g~RY 77 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG---IENLEIPRR---NGRPSGEAYVEFTSEEDVEKALKK-DRESM----GHRY 77 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc---eeEEEEecc---CCCcCcceEEEeechHHHHHHHHh-hHHHh----CCce
Confidence 355788999999999999999999998 888888775 799999999999999999999985 33333 3577
Q ss_pred EEEeecCCCCCC------CccccCCccEEEEcCCCCCchhHHHHHhhhccCceEE-EEEEecCCCCCcceEEEEEeCCHH
Q 013047 109 VKVAFAEPLREP------DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR-IVLARNMSTAKRKDYGFIDFSTHE 181 (450)
Q Consensus 109 i~v~~a~~~~~~------~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~-v~i~~d~~~g~~rG~afV~F~s~e 181 (450)
|.|-.+...... ..........|-+.+||+.||++||.+||+..-.|.. |.++.+ ..+++.+.|||+|++.+
T Consensus 78 IEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe 156 (510)
T KOG4211|consen 78 IEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQE 156 (510)
T ss_pred EEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHH
Confidence 888766433221 1112235578999999999999999999999876666 334444 46679999999999999
Q ss_pred HHHHHHHHhCCCeecCCeeEE
Q 013047 182 AAVACINAINNKEFSDGNSKV 202 (450)
Q Consensus 182 ~A~~Ai~~l~g~~~~g~~i~v 202 (450)
.|++||.. |.+.|..+-|.|
T Consensus 157 ~ae~Al~r-hre~iGhRYIEv 176 (510)
T KOG4211|consen 157 SAEIALGR-HRENIGHRYIEV 176 (510)
T ss_pred HHHHHHHH-HHHhhccceEEe
Confidence 99999964 444555554333
No 38
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=2.3e-18 Score=158.24 Aligned_cols=149 Identities=18% Similarity=0.337 Sum_probs=126.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEE
Q 013047 31 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 110 (450)
Q Consensus 31 ~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~ 110 (450)
..|||++||+.+.+.+|+.||.+||. |.+|.|.. ||+||+|++..||..||..||++++. +..+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~--~~d~~mk~---------gf~fv~fed~rda~Dav~~l~~~~l~----~e~~v 66 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGK--IPDADMKN---------GFGFVEFEDPRDADDAVHDLDGKELC----GERLV 66 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccc--cccceeec---------ccceeccCchhhhhcccchhcCceec----ceeee
Confidence 46899999999999999999999999 99988875 79999999999999999999999873 45588
Q ss_pred EeecCCCCCCC---------------ccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEE
Q 013047 111 VAFAEPLREPD---------------PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 175 (450)
Q Consensus 111 v~~a~~~~~~~---------------~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV 175 (450)
|+++....... .....+...|+|.+|+..+.|++|.+.|.++|.+....+ .++++||
T Consensus 67 ve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v 138 (216)
T KOG0106|consen 67 VEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFV 138 (216)
T ss_pred eecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccce
Confidence 88887421111 111334578999999999999999999999999855544 4678999
Q ss_pred EeCCHHHHHHHHHHhCCCeecCCeeEE
Q 013047 176 DFSTHEAAVACINAINNKEFSDGNSKV 202 (450)
Q Consensus 176 ~F~s~e~A~~Ai~~l~g~~~~g~~i~v 202 (450)
+|++.++|++||+.|++..+.++.|++
T Consensus 139 ~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 139 EFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred eehhhhhhhhcchhccchhhcCceeee
Confidence 999999999999999999999998766
No 39
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.73 E-value=1.4e-17 Score=167.83 Aligned_cols=162 Identities=22% Similarity=0.377 Sum_probs=127.8
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEE
Q 013047 32 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKV 111 (450)
Q Consensus 32 ~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v 111 (450)
+|||+||.+++|+++|+.+|+.||. |+.|.++.|.. ||++|||+||+|.+.++|++|++.||+.++ .|+.|+|
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~--Ie~v~l~~d~~-tG~skgfGfi~f~~~~~ar~a~e~lngfel----AGr~ikV 352 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGK--IENVQLTKDSE-TGRSKGFGFITFVNKEDARKALEQLNGFEL----AGRLIKV 352 (549)
T ss_pred hhhhcccccCchHHHHhhhccCccc--ceeeeeccccc-cccccCcceEEEecHHHHHHHHHHhcccee----cCceEEE
Confidence 4999999999999999999999999 99999999865 999999999999999999999999999666 5888888
Q ss_pred eecCCCCCCCcc-------------------------------------------------------------------c
Q 013047 112 AFAEPLREPDPE-------------------------------------------------------------------I 124 (450)
Q Consensus 112 ~~a~~~~~~~~~-------------------------------------------------------------------~ 124 (450)
..-..+...... .
T Consensus 353 ~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p 432 (549)
T KOG0147|consen 353 SVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDP 432 (549)
T ss_pred EEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCc
Confidence 632211000000 0
Q ss_pred c-------CCccEEEEcCC--CCCch--------hHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 013047 125 M-------AHVKTVFLDGV--PPHWK--------ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187 (450)
Q Consensus 125 ~-------~~~~~lfV~nL--p~~~t--------e~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai 187 (450)
. .++.++.|+|+ |.+.| .+||.+.+.++|.|..|.|.++ +-|+.||.|++.++|.+|+
T Consensus 433 ~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~ 507 (549)
T KOG0147|consen 433 ADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAV 507 (549)
T ss_pred cccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHH
Confidence 0 11234445555 11111 4778888999999998888654 4599999999999999999
Q ss_pred HHhCCCeecCCeeEEEEE
Q 013047 188 NAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 188 ~~l~g~~~~g~~i~v~v~ 205 (450)
.+|||.+|.++.|++.+-
T Consensus 508 ~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 508 KALHGRWFAGRMITAKYL 525 (549)
T ss_pred HHHhhhhhccceeEEEEe
Confidence 999999999998877653
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=3.2e-17 Score=144.32 Aligned_cols=84 Identities=24% Similarity=0.386 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
...+++|||+||++++|+++|+++|++||. |++|+|+.|.. |++++|||||+|++.++|++||+.|++.+| .+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~--I~~v~i~~d~~-tg~~kGfaFV~F~~~e~A~~Al~~lng~~i----~G 103 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGD--VVDAKVIVDRE-TGRSRGFGFVNFNDEGAATAAISEMDGKEL----NG 103 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCC--eEEEEEEecCC-CCCcceEEEEEECCHHHHHHHHHHcCCCEE----CC
Confidence 445789999999999999999999999999 99999999976 899999999999999999999999999877 58
Q ss_pred ceEEEeecCCC
Q 013047 107 RTVKVAFAEPL 117 (450)
Q Consensus 107 r~i~v~~a~~~ 117 (450)
+.|+|+++..+
T Consensus 104 r~l~V~~a~~~ 114 (144)
T PLN03134 104 RHIRVNPANDR 114 (144)
T ss_pred EEEEEEeCCcC
Confidence 99999998654
No 41
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.72 E-value=1.8e-16 Score=144.36 Aligned_cols=153 Identities=21% Similarity=0.353 Sum_probs=131.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHH----HHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCC
Q 013047 29 DNDTLFVGNICNTWTKEAIKQ----KLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 104 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~----~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~ 104 (450)
.+.||||.||...+..++|+. +|++||. |.+|.... |.+.+|-|||.|.+.+.|-.|+.+|++..++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~--ildI~a~k----t~KmRGQA~VvFk~~~~As~A~r~l~gfpFy--- 78 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGK--ILDISAFK----TPKMRGQAFVVFKETEAASAALRALQGFPFY--- 78 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCC--eEEEEecC----CCCccCceEEEecChhHHHHHHHHhcCCccc---
Confidence 455999999999999999998 9999999 99999887 6778999999999999999999999999884
Q ss_pred CCceEEEeecCCCCCCCc---------------------------------------------cccCCccEEEEcCCCCC
Q 013047 105 PERTVKVAFAEPLREPDP---------------------------------------------EIMAHVKTVFLDGVPPH 139 (450)
Q Consensus 105 ~gr~i~v~~a~~~~~~~~---------------------------------------------~~~~~~~~lfV~nLp~~ 139 (450)
++.++|.+|..+..... ....+...||+.|||.+
T Consensus 79 -gK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~e 157 (221)
T KOG4206|consen 79 -GKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSE 157 (221)
T ss_pred -CchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcc
Confidence 89999988864321100 01234568999999999
Q ss_pred chhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeec
Q 013047 140 WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196 (450)
Q Consensus 140 ~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~ 196 (450)
++.+.|..+|.+|.-.++|.++.. ..+.|||+|.+...|..|...|++..|.
T Consensus 158 s~~e~l~~lf~qf~g~keir~i~~-----~~~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 158 SESEMLSDLFEQFPGFKEIRLIPP-----RSGIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred hhHHHHHHHHhhCcccceeEeccC-----CCceeEEecchhhhhHHHhhhhccceec
Confidence 999999999999998999988875 4689999999999999999999988876
No 42
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.68 E-value=1.3e-15 Score=145.76 Aligned_cols=164 Identities=17% Similarity=0.294 Sum_probs=134.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCee--------EEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCc
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVE--------NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 100 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~--------~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~ 100 (450)
.++.|||.|||.++|.+++.++|++||. |. .|+|.++. .|+.||-|.|.|-..|.++.|++.|+...+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGi--I~~d~~t~epk~KlYrd~--~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGI--IMRDPQTGEPKVKLYRDN--QGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcce--EeccCCCCCeeEEEEecC--CCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 3677999999999999999999999997 65 38899886 699999999999999999999999999988
Q ss_pred ccCCCCceEEEeecCCCCC---------C------------------------CccccCCccEEEEcCCCC----Cch--
Q 013047 101 VFGHPERTVKVAFAEPLRE---------P------------------------DPEIMAHVKTVFLDGVPP----HWK-- 141 (450)
Q Consensus 101 ~~g~~gr~i~v~~a~~~~~---------~------------------------~~~~~~~~~~lfV~nLp~----~~t-- 141 (450)
.++.|+|+.|+-..+ . .+......++|.|+||=. ..+
T Consensus 209 ----rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~ 284 (382)
T KOG1548|consen 209 ----RGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPD 284 (382)
T ss_pred ----cCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHH
Confidence 489999987752110 0 011122346888998722 122
Q ss_pred -----hHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 142 -----ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 142 -----e~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
+++|++..++||.|..|.|.-. .+.|.+.|.|.+.++|..||+.|+|..|.++.|...+
T Consensus 285 l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i 348 (382)
T KOG1548|consen 285 LLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASI 348 (382)
T ss_pred HHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEE
Confidence 5677888999999999987643 4789999999999999999999999999999876655
No 43
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.68 E-value=7.2e-16 Score=139.28 Aligned_cols=167 Identities=18% Similarity=0.232 Sum_probs=125.5
Q ss_pred ccCCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCccc
Q 013047 23 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 102 (450)
Q Consensus 23 ~~~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~ 102 (450)
.+.....-+||||.+||.+++..+|..+|..|-- .+.+.|........-.+-+|||+|.+.++|++|+++||+..|-.
T Consensus 27 ~~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~G--YEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDp 104 (284)
T KOG1457|consen 27 LADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHG--YEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDP 104 (284)
T ss_pred ccccccccceeeeccCCcccCHHHHHHHhccCCC--ccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecc
Confidence 3344445799999999999999999999999854 77777776433234456799999999999999999999987633
Q ss_pred CCCCceEEEeecCCCCCCCccc----------------------------------------------------------
Q 013047 103 GHPERTVKVAFAEPLREPDPEI---------------------------------------------------------- 124 (450)
Q Consensus 103 g~~gr~i~v~~a~~~~~~~~~~---------------------------------------------------------- 124 (450)
. ...+|.|++|+...+.....
T Consensus 105 E-~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l 183 (284)
T KOG1457|consen 105 E-TGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEAL 183 (284)
T ss_pred c-cCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhh
Confidence 3 46778887764321110000
Q ss_pred -----------------------cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHH
Q 013047 125 -----------------------MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 181 (450)
Q Consensus 125 -----------------------~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e 181 (450)
.....+|||.||..+|+|++|+.+|+.|-....++|... .....|||+|++.+
T Consensus 184 ~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~ 259 (284)
T KOG1457|consen 184 SAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIE 259 (284)
T ss_pred hhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHH
Confidence 001148999999999999999999999976665655321 23457999999999
Q ss_pred HHHHHHHHhCCCeec
Q 013047 182 AAVACINAINNKEFS 196 (450)
Q Consensus 182 ~A~~Ai~~l~g~~~~ 196 (450)
.|..|+..|+|..|.
T Consensus 260 ~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 260 QATDAMNHLQGNLLS 274 (284)
T ss_pred HHHHHHHHhhcceec
Confidence 999999998887763
No 44
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=2e-15 Score=144.94 Aligned_cols=196 Identities=12% Similarity=0.215 Sum_probs=152.3
Q ss_pred ChhhHHHHHhhCCCcccCCcccccCCCCC-----------------CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEE
Q 013047 1 MLQLFLIYILIFPLKQICGKRCGTAPSED-----------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENIN 63 (450)
Q Consensus 1 ~~~~~~~~le~~~~~~~~~k~~~~~~~~~-----------------~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~ 63 (450)
++|-.+++||.++..++-++.+++..... -++|||..+.++++|+||+..|+.||+ |+.|+
T Consensus 164 vPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~--I~~C~ 241 (544)
T KOG0124|consen 164 VPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE--IVKCQ 241 (544)
T ss_pred CcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc--eeeEE
Confidence 45778999999999999999998764332 579999999999999999999999999 99999
Q ss_pred EEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCC------------------------
Q 013047 64 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE------------------------ 119 (450)
Q Consensus 64 l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~------------------------ 119 (450)
|-+++. +..+|||+||||.+......||..||-.++ .++-|+|-.+.....
T Consensus 242 LAr~pt-~~~HkGyGfiEy~n~qs~~eAiasMNlFDL----GGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTA 316 (544)
T KOG0124|consen 242 LARAPT-GRGHKGYGFIEYNNLQSQSEAIASMNLFDL----GGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATA 316 (544)
T ss_pred eeccCC-CCCccceeeEEeccccchHHHhhhcchhhc----ccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHH
Confidence 999985 678999999999999999999999987665 467777743210000
Q ss_pred --------------------------------------------------------------------------------
Q 013047 120 -------------------------------------------------------------------------------- 119 (450)
Q Consensus 120 -------------------------------------------------------------------------------- 119 (450)
T Consensus 317 Ki~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g 396 (544)
T KOG0124|consen 317 KIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLG 396 (544)
T ss_pred HHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchh
Confidence
Q ss_pred -------CCcc----------------------------------ccCCccEEEEcCC--CCCc---hhHHHHHhhhccC
Q 013047 120 -------PDPE----------------------------------IMAHVKTVFLDGV--PPHW---KENQIRDQIKGYG 153 (450)
Q Consensus 120 -------~~~~----------------------------------~~~~~~~lfV~nL--p~~~---te~dL~~~F~~~G 153 (450)
++.+ ....++.|.+.|+ |.++ -|.+|.+.+.+||
T Consensus 397 ~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG 476 (544)
T KOG0124|consen 397 LLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFG 476 (544)
T ss_pred hcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhccc
Confidence 0000 0111246777777 4443 3678999999999
Q ss_pred ceEEEEEEecCCCCCc----ceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 013047 154 DVIRIVLARNMSTAKR----KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203 (450)
Q Consensus 154 ~v~~v~i~~d~~~g~~----rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~ 203 (450)
.|..|.|...+.+... ---.||+|....++.+|+++|+|..|.|+++..+
T Consensus 477 ~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE 530 (544)
T KOG0124|consen 477 AVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAE 530 (544)
T ss_pred ceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehh
Confidence 9999988876554421 2247999999999999999999999999975443
No 45
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.67 E-value=5.1e-16 Score=155.53 Aligned_cols=109 Identities=24% Similarity=0.256 Sum_probs=94.9
Q ss_pred hHHHHHhhCCCcccCCcccccCCC------CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeE
Q 013047 4 LFLIYILIFPLKQICGKRCGTAPS------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77 (450)
Q Consensus 4 ~~~~~le~~~~~~~~~k~~~~~~~------~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~ 77 (450)
-...+|+.+....+.++.+.+.+. ...++|||+|||+++|+++|+++|++||+ |++|+|++|+. |+++|||
T Consensus 161 ~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~--V~~v~i~~d~~-tg~~kG~ 237 (346)
T TIGR01659 161 DSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQ--IVQKNILRDKL-TGTPRGV 237 (346)
T ss_pred HHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCC--EEEEEEeecCC-CCccceE
Confidence 356788889999999999988643 34778999999999999999999999999 99999999876 8999999
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCC
Q 013047 78 AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL 117 (450)
Q Consensus 78 aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~ 117 (450)
|||+|++.++|++||++||+..+. + ..+.|+|.+++..
T Consensus 238 aFV~F~~~e~A~~Ai~~lng~~~~-g-~~~~l~V~~a~~~ 275 (346)
T TIGR01659 238 AFVRFNKREEAQEAISALNNVIPE-G-GSQPLTVRLAEEH 275 (346)
T ss_pred EEEEECCHHHHHHHHHHhCCCccC-C-CceeEEEEECCcc
Confidence 999999999999999999998662 2 2578999988754
No 46
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.65 E-value=4e-15 Score=145.78 Aligned_cols=166 Identities=20% Similarity=0.315 Sum_probs=136.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhh-cCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKD-YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~-~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
.+.+||.|||+++..++|+++|.. .|+ |+-|.|+.|. +|+++|+|.|||+++|.++||++.||+.++ .+++
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGe--v~yveLl~D~--~GK~rGcavVEFk~~E~~qKa~E~lnk~~~----~GR~ 115 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGE--VEYVELLFDE--SGKARGCAVVEFKDPENVQKALEKLNKYEV----NGRE 115 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCc--eEeeeeeccc--CCCcCCceEEEeeCHHHHHHHHHHhhhccc----cCce
Confidence 566999999999999999999986 566 9999999996 899999999999999999999999999998 6999
Q ss_pred EEEeecCCCC---------------------------------------------CCC--cc------------------
Q 013047 109 VKVAFAEPLR---------------------------------------------EPD--PE------------------ 123 (450)
Q Consensus 109 i~v~~a~~~~---------------------------------------------~~~--~~------------------ 123 (450)
|+|+.....+ ..+ ..
T Consensus 116 l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~ 195 (608)
T KOG4212|consen 116 LVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYN 195 (608)
T ss_pred EEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhh
Confidence 9997322100 000 00
Q ss_pred ---------------ccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 013047 124 ---------------IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188 (450)
Q Consensus 124 ---------------~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~ 188 (450)
.-....++||.||...+..+.|++.|.--|.|+.|.+-.|++ +.++|||.++++.+-+|..||.
T Consensus 196 lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIs 274 (608)
T KOG4212|consen 196 LFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAIS 274 (608)
T ss_pred cccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHH
Confidence 000125899999999999999999999999999999998865 4889999999999999999999
Q ss_pred HhCCCeecCCeeEEEE
Q 013047 189 AINNKEFSDGNSKVKL 204 (450)
Q Consensus 189 ~l~g~~~~g~~i~v~v 204 (450)
.|++.-+..+..++.+
T Consensus 275 ml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 275 MLDRQGLFDRRMTVRL 290 (608)
T ss_pred hhccCCCccccceeec
Confidence 9987665555444443
No 47
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.60 E-value=1.3e-14 Score=139.18 Aligned_cols=151 Identities=28% Similarity=0.466 Sum_probs=119.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceE
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 109 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i 109 (450)
..+|||+|||.++|+++|.++|.+||. |..|.|+.+.. ++.++|||||+|.+.++|+.|++.+++..+ .++.|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~--~~~~~~~~d~~-~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~----~~~~~ 187 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGP--VKRVRLVRDRE-TGKSRGFAFVEFESEESAEKAIEELNGKEL----EGRPL 187 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCc--eeEEEeeeccc-cCccCceEEEEecCHHHHHHHHHHcCCCeE----CCcee
Confidence 599999999999999999999999999 99999999974 899999999999999999999999998887 58999
Q ss_pred EEeecC----CCCCCC---------------ccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcc
Q 013047 110 KVAFAE----PLREPD---------------PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRK 170 (450)
Q Consensus 110 ~v~~a~----~~~~~~---------------~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~r 170 (450)
.|.++. ++.... .........+++.+++..++..++..+|..++.+..+.+..........
T Consensus 188 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (306)
T COG0724 188 RVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPK 267 (306)
T ss_pred EeeccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccc
Confidence 999853 222221 1112344689999999999999999999999999777776654333334
Q ss_pred eEEEEEeCCHHHHHHHH
Q 013047 171 DYGFIDFSTHEAAVACI 187 (450)
Q Consensus 171 G~afV~F~s~e~A~~Ai 187 (450)
.+.++.+.....+..++
T Consensus 268 ~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 268 SRSFVGNEASKDALESN 284 (306)
T ss_pred cccccchhHHHhhhhhh
Confidence 34444444444444443
No 48
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=1.4e-14 Score=149.96 Aligned_cols=167 Identities=17% Similarity=0.282 Sum_probs=127.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
....+.|+|+|||..++.++|.++|..||. |..|.|. + .|. -+.|+|.+..+|++|++.|.-+.+. .
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~--i~rvllp--~--~G~---~aiv~fl~p~eAr~Afrklaysr~k----~ 448 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGE--IGRVLLP--P--GGT---GAIVEFLNPLEARKAFRKLAYSRFK----S 448 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccc--cceeecC--c--ccc---eeeeeecCccchHHHHHHhchhhhc----c
Confidence 344688999999999999999999999999 9998443 2 221 3999999999999999998887662 3
Q ss_pred ceEEEeecCC-------CC---------C--C---------------Ccc------------ccCCccEEEEcCCCCCch
Q 013047 107 RTVKVAFAEP-------LR---------E--P---------------DPE------------IMAHVKTVFLDGVPPHWK 141 (450)
Q Consensus 107 r~i~v~~a~~-------~~---------~--~---------------~~~------------~~~~~~~lfV~nLp~~~t 141 (450)
..+.+.|+.. +. . . +.. .....++|||.||++.+|
T Consensus 449 ~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt 528 (725)
T KOG0110|consen 449 APLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTT 528 (725)
T ss_pred CccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccc
Confidence 3333333310 00 0 0 000 011113499999999999
Q ss_pred hHHHHHhhhccCceEEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 142 ENQIRDQIKGYGDVIRIVLARNMSTA---KRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 142 e~dL~~~F~~~G~v~~v~i~~d~~~g---~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
.++|+.+|.+.|.|..|.|...+... .+.|||||+|.+.++|++|+++|+|+.|+|..|.|.+..
T Consensus 529 ~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 529 LEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99999999999999999887764321 245999999999999999999999999999987777754
No 49
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=1.3e-14 Score=110.99 Aligned_cols=70 Identities=30% Similarity=0.575 Sum_probs=64.4
Q ss_pred EEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEE
Q 013047 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 110 (450)
Q Consensus 33 lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~ 110 (450)
|||+|||.++|+++|+++|++||. |..|+++.+. ++.++++|||+|++.++|++|++.|++..+ .+++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~--i~~~~~~~~~--~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~----~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGK--IESIKVMRNS--SGKSKGYAFVEFESEEDAEKALEELNGKKI----NGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTST--EEEEEEEEET--TSSEEEEEEEEESSHHHHHHHHHHHTTEEE----TTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhh--cccccccccc--cccccceEEEEEcCHHHHHHHHHHcCCCEE----CccCcC
Confidence 799999999999999999999999 9999999973 789999999999999999999999999876 466654
No 50
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=1.9e-14 Score=131.65 Aligned_cols=79 Identities=23% Similarity=0.415 Sum_probs=69.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
.-++|||++|+|.+++|+|+++|++||+ |+++.|+.|+. |++||||+||+|++.|.|++|++..+ .++ ++++
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGe--I~eavvitd~~-t~rskGyGfVTf~d~~aa~rAc~dp~--piI---dGR~ 82 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGE--IVEAVVITDKN-TGRSKGYGFVTFRDAEAATRACKDPN--PII---DGRK 82 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCc--eEEEEEEeccC-CccccceeeEEeecHHHHHHHhcCCC--Ccc---cccc
Confidence 4579999999999999999999999999 99999999987 99999999999999999999997433 344 5788
Q ss_pred EEEeecC
Q 013047 109 VKVAFAE 115 (450)
Q Consensus 109 i~v~~a~ 115 (450)
..|..|.
T Consensus 83 aNcnlA~ 89 (247)
T KOG0149|consen 83 ANCNLAS 89 (247)
T ss_pred cccchhh
Confidence 7777664
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.52 E-value=4.6e-14 Score=107.85 Aligned_cols=69 Identities=28% Similarity=0.600 Sum_probs=65.7
Q ss_pred EEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCee
Q 013047 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 200 (450)
Q Consensus 131 lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i 200 (450)
|||+|||.++|+++|+++|++||.|..+.+..+ .++..+++|||+|++.++|++|++.|++..+.++.|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCc
Confidence 799999999999999999999999999999998 678899999999999999999999999999999865
No 52
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=3.4e-14 Score=124.25 Aligned_cols=77 Identities=26% Similarity=0.430 Sum_probs=70.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceE
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 109 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i 109 (450)
.++|||+||+.++|+.||+..|..||+ |.+|+|-+.+- |||||||++..||++|+..|+++.| .+..|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~--lrsvWvArnPP------GfAFVEFed~RDA~DAvr~LDG~~~----cG~r~ 77 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGP--LRSVWVARNPP------GFAFVEFEDPRDAEDAVRYLDGKDI----CGSRI 77 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCc--ceeEEEeecCC------CceEEeccCcccHHHHHhhcCCccc----cCceE
Confidence 789999999999999999999999999 99999988754 9999999999999999999999998 48899
Q ss_pred EEeecCCCC
Q 013047 110 KVAFAEPLR 118 (450)
Q Consensus 110 ~v~~a~~~~ 118 (450)
+|+.+....
T Consensus 78 rVE~S~G~~ 86 (195)
T KOG0107|consen 78 RVELSTGRP 86 (195)
T ss_pred EEEeecCCc
Confidence 998876443
No 53
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=5.1e-14 Score=129.20 Aligned_cols=82 Identities=27% Similarity=0.483 Sum_probs=76.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
++.+|-|.||+.+++|++|+++|..||. |..|.|.+|+. ||.+||||||.|.+.+||++||+.||+.-. ..--
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~--i~rvylardK~-TG~~kGFAFVtF~sRddA~rAI~~LnG~gy----d~LI 260 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGP--ITRVYLARDKE-TGLSKGFAFVTFESRDDAARAIADLNGYGY----DNLI 260 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCc--cceeEEEEccc-cCcccceEEEEEecHHHHHHHHHHccCccc----ceEE
Confidence 5789999999999999999999999999 99999999986 999999999999999999999999999765 4577
Q ss_pred EEEeecCCC
Q 013047 109 VKVAFAEPL 117 (450)
Q Consensus 109 i~v~~a~~~ 117 (450)
|+|+|+.|+
T Consensus 261 LrvEwskP~ 269 (270)
T KOG0122|consen 261 LRVEWSKPS 269 (270)
T ss_pred EEEEecCCC
Confidence 899999875
No 54
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=3.7e-14 Score=117.76 Aligned_cols=83 Identities=22% Similarity=0.322 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
..+++||||+||++.+|||.|.++|+++|. |..|.|=-|.. +.+..|||||||-+.++|+.||+-++++.+ +.
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~--irriiMGLdr~-kktpCGFCFVeyy~~~dA~~AlryisgtrL----dd 105 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGD--IRRIIMGLDRF-KKTPCGFCFVEYYSRDDAEDALRYISGTRL----DD 105 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccc--hheeEeccccC-CcCccceEEEEEecchhHHHHHHHhccCcc----cc
Confidence 345889999999999999999999999999 99998888876 899999999999999999999999999987 68
Q ss_pred ceEEEeecCC
Q 013047 107 RTVKVAFAEP 116 (450)
Q Consensus 107 r~i~v~~a~~ 116 (450)
+.|.|+|-..
T Consensus 106 r~ir~D~D~G 115 (153)
T KOG0121|consen 106 RPIRIDWDAG 115 (153)
T ss_pred cceeeecccc
Confidence 9999987643
No 55
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=8.6e-14 Score=127.33 Aligned_cols=84 Identities=20% Similarity=0.420 Sum_probs=74.7
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
+.+||||++|+|+|..++|+++|++||+|++..|+.|+.++++|||+||+|.+.++|.+|++. ..-.|+|++..|.+..
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 457999999999999999999999999999999999999999999999999999999999965 4467999988888765
Q ss_pred eeCCC
Q 013047 207 RLSNP 211 (450)
Q Consensus 207 ~~~~~ 211 (450)
.-.++
T Consensus 90 lg~~p 94 (247)
T KOG0149|consen 90 LGGKP 94 (247)
T ss_pred hcCcc
Confidence 43443
No 56
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.6e-12 Score=113.82 Aligned_cols=74 Identities=16% Similarity=0.383 Sum_probs=68.4
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
-.++|||+||+..+++.||+.+|.+||.|..|-|..+ +.|||||||+++.+|++|+..|+|+.|.|..|+|++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 3579999999999999999999999999999988775 6899999999999999999999999999988777775
No 57
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.47 E-value=1.4e-12 Score=128.15 Aligned_cols=71 Identities=20% Similarity=0.324 Sum_probs=65.5
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
++|||.|||.++||+.|++-|..+|.|..++|+. .+++++ .|.|.++++|+.|+..|++..|+++.|+|.+
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 7899999999999999999999999999999954 577776 8999999999999999999999999988764
No 58
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.47 E-value=2.9e-12 Score=128.25 Aligned_cols=162 Identities=21% Similarity=0.243 Sum_probs=116.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeE-EEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVEN-INLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~-i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
+.....|-|++||+.||++||.+||+.+-+ |.+ |.|+.+. .+++.|.|||+|++.++|++||..... .++
T Consensus 100 ~~~d~vVRLRGLPfscte~dI~~FFaGL~I--v~~gi~l~~d~--rgR~tGEAfVqF~sqe~ae~Al~rhre---~iG-- 170 (510)
T KOG4211|consen 100 SANDGVVRLRGLPFSCTEEDIVEFFAGLEI--VPDGILLPMDQ--RGRPTGEAFVQFESQESAEIALGRHRE---NIG-- 170 (510)
T ss_pred CCCCceEEecCCCccCcHHHHHHHhcCCcc--cccceeeeccC--CCCcccceEEEecCHHHHHHHHHHHHH---hhc--
Confidence 345679999999999999999999999887 666 6677776 578999999999999999999975332 223
Q ss_pred CceEEEeecCC--------------------------CCC--------------------------------C-------
Q 013047 106 ERTVKVAFAEP--------------------------LRE--------------------------------P------- 120 (450)
Q Consensus 106 gr~i~v~~a~~--------------------------~~~--------------------------------~------- 120 (450)
-+-|.|..+.- +.. .
T Consensus 171 hRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs 250 (510)
T KOG4211|consen 171 HRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGS 250 (510)
T ss_pred cceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccc
Confidence 23444432110 000 0
Q ss_pred -----C---cc---------------ccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEe
Q 013047 121 -----D---PE---------------IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 177 (450)
Q Consensus 121 -----~---~~---------------~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F 177 (450)
+ .. .......+++.+||...++.+|..+|+..-.+ .|.|... .+++..|.|+|+|
T Consensus 251 ~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF 328 (510)
T KOG4211|consen 251 YGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEF 328 (510)
T ss_pred cccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeec
Confidence 0 00 00011578899999999999999999987544 4555555 4688999999999
Q ss_pred CCHHHHHHHHHHhCCCeecCCee
Q 013047 178 STHEAAVACINAINNKEFSDGNS 200 (450)
Q Consensus 178 ~s~e~A~~Ai~~l~g~~~~g~~i 200 (450)
+|.++|..|+. -++..+..+-|
T Consensus 329 ~t~edav~Ams-kd~anm~hrYV 350 (510)
T KOG4211|consen 329 ATGEDAVGAMG-KDGANMGHRYV 350 (510)
T ss_pred ccchhhHhhhc-cCCcccCccee
Confidence 99999999985 35555655543
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.46 E-value=2.6e-13 Score=104.25 Aligned_cols=70 Identities=31% Similarity=0.577 Sum_probs=61.5
Q ss_pred EEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEE
Q 013047 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 110 (450)
Q Consensus 33 lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~ 110 (450)
|||+|||+++|+++|+++|+.+|. |..|+++.++ +++++++|||+|.+.++|++|++.+++..+ .++.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~--v~~v~~~~~~--~~~~~~~a~v~f~~~~~a~~al~~~~~~~~----~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGP--VEKVRLIKNK--DGQSRGFAFVEFSSEEDAKRALELLNGKEI----DGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSB--EEEEEEEEST--TSSEEEEEEEEESSHHHHHHHHHHHTTEEE----TTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCC--cceEEEEeee--ccccCCEEEEEeCCHHHHHHHHHHCCCcEE----CCEEcC
Confidence 799999999999999999999998 9999999985 489999999999999999999999987766 467653
No 60
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1.8e-13 Score=130.26 Aligned_cols=82 Identities=13% Similarity=0.286 Sum_probs=73.5
Q ss_pred cccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 013047 123 EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202 (450)
Q Consensus 123 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v 202 (450)
+.....++|+|+|||+..-|.||+.+|.+||+|.+|+|+.+. .-+|||+||+|++.++|++|-++|||..|+|++|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 334567899999999999999999999999999999999985 458999999999999999999999999999998666
Q ss_pred EEEE
Q 013047 203 KLRA 206 (450)
Q Consensus 203 ~v~~ 206 (450)
....
T Consensus 169 n~AT 172 (376)
T KOG0125|consen 169 NNAT 172 (376)
T ss_pred eccc
Confidence 5543
No 61
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=4.9e-13 Score=136.86 Aligned_cols=168 Identities=18% Similarity=0.285 Sum_probs=127.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
.....+|||++||..++++.|+|+++.||. ++...++.|.. ++.+|||||.||.+......|++.||++.+ -+
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~--lk~f~lv~d~~-~g~skg~af~ey~dpsvtd~A~agLnGm~l----gd 358 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGP--LKAFRLVKDSA-TGNSKGFAFCEYCDPSVTDQAIAGLNGMQL----GD 358 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhccc--chhheeecccc-cccccceeeeeeeCCcchhhhhcccchhhh----cC
Confidence 345679999999999999999999999999 99999999976 899999999999999999999999999987 36
Q ss_pred ceEEEeecCCCCCCCcccc-------------------CCccEEEEcCC------CCCc----hhHHHHHhhhccCceEE
Q 013047 107 RTVKVAFAEPLREPDPEIM-------------------AHVKTVFLDGV------PPHW----KENQIRDQIKGYGDVIR 157 (450)
Q Consensus 107 r~i~v~~a~~~~~~~~~~~-------------------~~~~~lfV~nL------p~~~----te~dL~~~F~~~G~v~~ 157 (450)
+.|.|..|-.......... .++..|-+.|+ -++. --++|+..+.+||.|..
T Consensus 359 ~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~ 438 (500)
T KOG0120|consen 359 KKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRS 438 (500)
T ss_pred ceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeE
Confidence 8888876643322111100 01112222222 1111 12556677889999999
Q ss_pred EEEEecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeE
Q 013047 158 IVLARNM---STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201 (450)
Q Consensus 158 v~i~~d~---~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~ 201 (450)
|.|...- ...-..|..||+|.+.+++++|.++|+|..|.++.+.
T Consensus 439 v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVv 485 (500)
T KOG0120|consen 439 VEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVV 485 (500)
T ss_pred EecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEE
Confidence 9998762 1223457799999999999999999999999999643
No 62
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=6.2e-13 Score=125.27 Aligned_cols=81 Identities=23% Similarity=0.387 Sum_probs=76.5
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
.+-+||||+-|+.+|+|.+|+..|++||.|+.|.|+.++.|++++|||||+|+++.+.++|.++.+|..|+++.|.|.|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999998766665
Q ss_pred E
Q 013047 206 A 206 (450)
Q Consensus 206 ~ 206 (450)
.
T Consensus 179 R 179 (335)
T KOG0113|consen 179 R 179 (335)
T ss_pred c
Confidence 4
No 63
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.43 E-value=6.7e-13 Score=101.91 Aligned_cols=69 Identities=25% Similarity=0.562 Sum_probs=63.5
Q ss_pred EEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCee
Q 013047 131 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 200 (450)
Q Consensus 131 lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i 200 (450)
|+|+|||+++++++|+++|+.+|.|..|.+..++. +..+++|||+|.+.++|++|++.+++..|+|+.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEc
Confidence 79999999999999999999999999999999876 8899999999999999999999999999999864
No 64
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.43 E-value=1.4e-12 Score=123.25 Aligned_cols=77 Identities=23% Similarity=0.251 Sum_probs=69.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceE
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 109 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i 109 (450)
.++|||+||++++|+++|++||+.||. |++|.|+.+.. .+|||||+|++.++|+.||. |++..+ .++.|
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~--I~~V~I~~d~~----~~GfAFVtF~d~eaAe~All-LnG~~l----~gr~V 72 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGD--IEYVEMQSENE----RSQIAYVTFKDPQGAETALL-LSGATI----VDQSV 72 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEeecCC----CCCEEEEEeCcHHHHHHHHH-hcCCee----CCceE
Confidence 579999999999999999999999999 99999998742 46999999999999999995 999887 58999
Q ss_pred EEeecCCC
Q 013047 110 KVAFAEPL 117 (450)
Q Consensus 110 ~v~~a~~~ 117 (450)
+|.++...
T Consensus 73 ~Vt~a~~~ 80 (260)
T PLN03120 73 TITPAEDY 80 (260)
T ss_pred EEEeccCC
Confidence 99998644
No 65
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=6.5e-13 Score=126.55 Aligned_cols=81 Identities=25% Similarity=0.340 Sum_probs=74.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
..++|+|.|||+..-|.||+.+|++||. |.+|.||.+ +--||||+||+|++.+||++|-++||++.| .|++
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~--VldVEIIfN---ERGSKGFGFVTmen~~dadRARa~LHgt~V----EGRk 165 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGK--VLDVEIIFN---ERGSKGFGFVTMENPADADRARAELHGTVV----EGRK 165 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCc--eeeEEEEec---cCCCCccceEEecChhhHHHHHHHhhccee----eceE
Confidence 3679999999999999999999999999 999999997 446899999999999999999999999988 6999
Q ss_pred EEEeecCCCC
Q 013047 109 VKVAFAEPLR 118 (450)
Q Consensus 109 i~v~~a~~~~ 118 (450)
|+|..|..+-
T Consensus 166 IEVn~ATarV 175 (376)
T KOG0125|consen 166 IEVNNATARV 175 (376)
T ss_pred EEEeccchhh
Confidence 9999887653
No 66
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=1.4e-12 Score=122.97 Aligned_cols=81 Identities=27% Similarity=0.488 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
..-+||||+-|+.+++|++|+..|+.||. |+.|+||+|+. ||++||||||||+++.+..+|.+..+++.| +++
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~--IkrirlV~d~v-TgkskGYAFIeye~erdm~~AYK~adG~~I----dgr 171 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGP--IKRIRLVRDKV-TGKSKGYAFIEYEHERDMKAAYKDADGIKI----DGR 171 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCc--ceeEEEeeecc-cCCccceEEEEeccHHHHHHHHHhccCcee----cCc
Confidence 34689999999999999999999999999 99999999977 999999999999999999999999999877 689
Q ss_pred eEEEeecC
Q 013047 108 TVKVAFAE 115 (450)
Q Consensus 108 ~i~v~~a~ 115 (450)
.|.|++..
T Consensus 172 ri~VDvER 179 (335)
T KOG0113|consen 172 RILVDVER 179 (335)
T ss_pred EEEEEecc
Confidence 99998764
No 67
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=1e-12 Score=115.79 Aligned_cols=76 Identities=17% Similarity=0.392 Sum_probs=67.2
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
..++|||+|||.++.+++|+++|-|||.|.+|.+..-+ ....||||+|+++.+|+.||..-+|..+++..+.|++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 46799999999999999999999999999999885432 34679999999999999999999999999988777663
No 68
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=4.3e-13 Score=112.41 Aligned_cols=82 Identities=29% Similarity=0.463 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
+++-=+|||.+|...+||++|.+.|..||+ |++|+|-.|.. ||-.||||+|||++.++|++||.+||+.+++ +
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGe--iKNihLNLDRR-tGy~KGYaLvEYet~keAq~A~~~~Ng~~ll----~ 141 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGE--IKNIHLNLDRR-TGYVKGYALVEYETLKEAQAAIDALNGAELL----G 141 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhccc--ccceeeccccc-cccccceeeeehHhHHHHHHHHHhccchhhh----C
Confidence 344558999999999999999999999999 99999999987 9999999999999999999999999999985 8
Q ss_pred ceEEEeecC
Q 013047 107 RTVKVAFAE 115 (450)
Q Consensus 107 r~i~v~~a~ 115 (450)
+.|+|+|+=
T Consensus 142 q~v~VDw~F 150 (170)
T KOG0130|consen 142 QNVSVDWCF 150 (170)
T ss_pred CceeEEEEE
Confidence 999999983
No 69
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.40 E-value=5.3e-13 Score=119.58 Aligned_cols=80 Identities=15% Similarity=0.348 Sum_probs=75.2
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
-...|.|-||.+.|+.++|+.+|++||.|.+|-|..|+.|..++|||||.|....+|++|+++|+|..|+|+.|.|+++.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999988777754
No 70
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.38 E-value=5.1e-13 Score=119.67 Aligned_cols=80 Identities=26% Similarity=0.386 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
..++|.|-||.+-+|.++|+.+|++||. |-+|.|.+|.. |++++|||||.|....||++||++|++..| ++++
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~--vgDVyIPrdr~-Tr~sRgFaFVrf~~k~daedA~damDG~~l----dgRe 84 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGR--VGDVYIPRDRY-TRQSRGFAFVRFHDKRDAEDALDAMDGAVL----DGRE 84 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCc--ccceecccccc-cccccceeEEEeeecchHHHHHHhhcceee----ccce
Confidence 4678999999999999999999999999 99999999988 999999999999999999999999999877 5899
Q ss_pred EEEeecC
Q 013047 109 VKVAFAE 115 (450)
Q Consensus 109 i~v~~a~ 115 (450)
|.|++|.
T Consensus 85 lrVq~ar 91 (256)
T KOG4207|consen 85 LRVQMAR 91 (256)
T ss_pred eeehhhh
Confidence 9988663
No 71
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.38 E-value=9.4e-12 Score=121.66 Aligned_cols=160 Identities=17% Similarity=0.299 Sum_probs=128.0
Q ss_pred CCeEEEcCCC-CCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 30 NDTLFVGNIC-NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 30 ~~~lyV~nLp-~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
+..|.|.||- ..+|.+.|..+|.-||. |..|+|+.++. -.|.|++.+...|+.|+++|++..+ .++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGd--VqRVkil~nkk------d~ALIQmsd~~qAqLA~~hL~g~~l----~gk~ 364 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGD--VQRVKILYNKK------DNALIQMSDGQQAQLAMEHLEGHKL----YGKK 364 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcc--eEEEEeeecCC------cceeeeecchhHHHHHHHHhhccee----cCce
Confidence 6789999995 56999999999999999 99999998753 3699999999999999999999988 4899
Q ss_pred EEEeecCCCC-----CCCcc-------------------------ccCCccEEEEcCCCCCchhHHHHHhhhccCceEEE
Q 013047 109 VKVAFAEPLR-----EPDPE-------------------------IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRI 158 (450)
Q Consensus 109 i~v~~a~~~~-----~~~~~-------------------------~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v 158 (450)
|+|.+++-.. +.++. +..++.+|++.|+|..++||+|++.|.+-|-+++.
T Consensus 365 lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vka 444 (492)
T KOG1190|consen 365 LRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKA 444 (492)
T ss_pred EEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEe
Confidence 9998775221 11110 12345689999999999999999999998865444
Q ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCC-eeEEEEE
Q 013047 159 VLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG-NSKVKLR 205 (450)
Q Consensus 159 ~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~-~i~v~v~ 205 (450)
.... .+.+-+|++++++.|+|..|+..|+.+.+.+. .++|.+.
T Consensus 445 fkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 445 FKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred eeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 3322 33566999999999999999999999999876 4555544
No 72
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.3e-12 Score=120.12 Aligned_cols=79 Identities=20% Similarity=0.416 Sum_probs=72.2
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
...+|-|.||+.+++|++|+++|.+||.|..|.|..|++||.++|||||+|++.++|++||+.|||.-++.-.|.|++.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 3468999999999999999999999999999999999999999999999999999999999999999887755555443
No 73
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=9.7e-13 Score=109.40 Aligned_cols=82 Identities=17% Similarity=0.311 Sum_probs=75.7
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
..++++|||+||+..|+|++|-++|+++|+|..|.+-.|+.+..+.|||||+|-+.++|+.|+.-++++.++.+.|.+.+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 44678999999999999999999999999999999999998888999999999999999999999999999999877666
Q ss_pred EE
Q 013047 205 RA 206 (450)
Q Consensus 205 ~~ 206 (450)
..
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 43
No 74
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.37 E-value=1.1e-10 Score=113.07 Aligned_cols=166 Identities=14% Similarity=0.202 Sum_probs=126.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
.+-.|.|++|...++|.||.+.++.||+ |.-|+++..+ -.|.|||++.+-|+.++.-.....+.++ ++.
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~--i~yvt~~P~~-------r~alvefedi~~akn~Vnfaa~n~i~i~--gq~ 98 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGP--IAYVTCMPHK-------RQALVEFEDIEGAKNCVNFAADNQIYIA--GQQ 98 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCc--eEEEEecccc-------ceeeeeeccccchhhheehhccCccccc--Cch
Confidence 4568999999999999999999999999 9888888754 2699999999999999864444444444 444
Q ss_pred EEEeecCCCCC--CCccccCCccEEEEcCC--CCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 013047 109 VKVAFAEPLRE--PDPEIMAHVKTVFLDGV--PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 184 (450)
Q Consensus 109 i~v~~a~~~~~--~~~~~~~~~~~lfV~nL--p~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~ 184 (450)
..+.++..+.. ...+.....+.|.+.=| -..+|.+-|..+....|+|..|.|+.. + ---|.|||++.+.|+
T Consensus 99 Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~Aq 173 (494)
T KOG1456|consen 99 ALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQ 173 (494)
T ss_pred hhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhHHHH
Confidence 45555533222 22333344455555444 456899999999999999999999875 2 235899999999999
Q ss_pred HHHHHhCCCeecCCeeEEEEEEeeCCCC
Q 013047 185 ACINAINNKEFSDGNSKVKLRARLSNPM 212 (450)
Q Consensus 185 ~Ai~~l~g~~~~g~~i~v~v~~~~~~~~ 212 (450)
+|.++|||..|--.+ |++++..++|.
T Consensus 174 rAk~alNGADIYsGC--CTLKIeyAkP~ 199 (494)
T KOG1456|consen 174 RAKAALNGADIYSGC--CTLKIEYAKPT 199 (494)
T ss_pred HHHhhcccccccccc--eeEEEEecCcc
Confidence 999999999998776 66666666653
No 75
>smart00362 RRM_2 RNA recognition motif.
Probab=99.37 E-value=3.4e-12 Score=96.75 Aligned_cols=71 Identities=37% Similarity=0.602 Sum_probs=64.0
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEE
Q 013047 32 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKV 111 (450)
Q Consensus 32 ~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v 111 (450)
+|||+|||.++++++|+++|++||. |+.|.++.++ +.++++|||+|.+.++|++|++.+++..+ .++.|+|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~--v~~~~~~~~~---~~~~~~~~v~f~~~~~a~~a~~~~~~~~~----~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGP--IESVKIPKDT---GKSKGFAFVEFESEEDAEKAIEALNGTKL----GGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCC--EEEEEEecCC---CCCCceEEEEeCCHHHHHHHHHHhCCcEE----CCEEEee
Confidence 5899999999999999999999999 9999999874 67889999999999999999999998766 4677765
No 76
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.37 E-value=3.9e-13 Score=136.87 Aligned_cols=81 Identities=27% Similarity=0.424 Sum_probs=76.5
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEE
Q 013047 31 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 110 (450)
Q Consensus 31 ~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~ 110 (450)
..|||+|||++++|++|.++|++.|. |.+++++.|.. ||.+||||||+|++.++|+.|++.||+.++ .+++|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~--v~s~~~v~D~~-tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~----~gr~l~ 91 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGP--VLSFRLVYDRE-TGKPKGFGFCEFTDEETAERAIRNLNGAEF----NGRKLR 91 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCc--cceeeeccccc-CCCcCceeeEecCchhhHHHHHHhcCCccc----CCceEE
Confidence 89999999999999999999999999 99999999976 999999999999999999999999999998 599999
Q ss_pred EeecCCCC
Q 013047 111 VAFAEPLR 118 (450)
Q Consensus 111 v~~a~~~~ 118 (450)
|.|+...+
T Consensus 92 v~~~~~~~ 99 (435)
T KOG0108|consen 92 VNYASNRK 99 (435)
T ss_pred eecccccc
Confidence 99986443
No 77
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.2e-11 Score=124.64 Aligned_cols=159 Identities=16% Similarity=0.272 Sum_probs=116.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCC--CCCCeee---EEEEEeCCHHHHHHHHHHhCCCC--c
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ--HEGLSRG---FAFVMFSCHVDAMAAYKRLQKPD--V 100 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~--~tg~skG---~aFVeF~~~edA~~Al~~l~~~~--~ 100 (450)
.-+++|||++||++++|+.|...|..||. ..|.+..... .--..+| |+|+.|+++..+++-|.++..-+ .
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs---~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~ 333 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGS---VKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNY 333 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccc---eEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccce
Confidence 34789999999999999999999999997 3344442111 1124567 99999999999888777654321 1
Q ss_pred ccC-----CCCceEEEeecCCCC----CCCccccCCccEEEEcCCCCCchhHHHHHhhh-ccCceEEEEEEecCCCCCcc
Q 013047 101 VFG-----HPERTVKVAFAEPLR----EPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK-GYGDVIRIVLARNMSTAKRK 170 (450)
Q Consensus 101 ~~g-----~~gr~i~v~~a~~~~----~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~-~~G~v~~v~i~~d~~~g~~r 170 (450)
++. -+.+.|+|....... ........+.+||||++||--++.++|..+|+ -||.|..+-|-.|++-...+
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 110 011222222111000 01223355678999999999999999999999 79999999999998899999
Q ss_pred eEEEEEeCCHHHHHHHHHH
Q 013047 171 DYGFIDFSTHEAAVACINA 189 (450)
Q Consensus 171 G~afV~F~s~e~A~~Ai~~ 189 (450)
|.|-|+|.+..+-.+||++
T Consensus 414 GaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcceeeecccHHHHHHHhh
Confidence 9999999999999999974
No 78
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.36 E-value=2.7e-12 Score=121.32 Aligned_cols=77 Identities=16% Similarity=0.263 Sum_probs=69.3
Q ss_pred ccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEEe
Q 013047 128 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 207 (450)
Q Consensus 128 ~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~~ 207 (450)
.++|||+||++.++|++|+++|+.||.|+.|.|+.+.. .++||||+|++.++|+.|| .|||..|.++.|.|+....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 47999999999999999999999999999999998753 5789999999999999999 5999999999887777544
Q ss_pred e
Q 013047 208 L 208 (450)
Q Consensus 208 ~ 208 (450)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 79
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.36 E-value=2.3e-11 Score=118.99 Aligned_cols=169 Identities=18% Similarity=0.274 Sum_probs=133.4
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeE-EEEEeCCHHHHHHHHHHhCCCCcccCCCCceEE
Q 013047 32 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF-AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 110 (450)
Q Consensus 32 ~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~-aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~ 110 (450)
+++|.|+-+.+|-|-|.++|++||. |..|.-+... .+| |.|+|.+.+.|+.|..+|++..|.-+ -.+|+
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~--VlKIiTF~Kn------n~FQALvQy~d~~sAq~AK~aLdGqnIyng--cCtLr 221 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGF--VLKIITFTKN------NGFQALVQYTDAVSAQAAKLALDGQNIYNG--CCTLR 221 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcce--eEEEEEEecc------cchhhhhhccchhhHHHHHHhccCCcccCc--eeEEE
Confidence 5788999999999999999999999 9887666532 133 99999999999999999999988655 46677
Q ss_pred EeecCC----------CCC--------CC--------------------------------------cc--ccCCccEEE
Q 013047 111 VAFAEP----------LRE--------PD--------------------------------------PE--IMAHVKTVF 132 (450)
Q Consensus 111 v~~a~~----------~~~--------~~--------------------------------------~~--~~~~~~~lf 132 (450)
|+++.- +.. .. .. .......|.
T Consensus 222 Id~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vll 301 (492)
T KOG1190|consen 222 IDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLL 301 (492)
T ss_pred eehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEE
Confidence 765431 000 00 00 000136788
Q ss_pred EcCCCCC-chhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEEeeCCC
Q 013047 133 LDGVPPH-WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 211 (450)
Q Consensus 133 V~nLp~~-~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~~~~~~ 211 (450)
|.||..+ +|.+.|..+|.-||+|..|+|+.++ +.-|+|++.+...|+-|++.|+|+.|.|+.|+|...+...-.
T Consensus 302 vsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 302 VSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred EecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 9999764 8999999999999999999999973 467999999999999999999999999999888887766555
Q ss_pred CCCc
Q 013047 212 MPKT 215 (450)
Q Consensus 212 ~~~~ 215 (450)
.++.
T Consensus 377 lp~e 380 (492)
T KOG1190|consen 377 LPRE 380 (492)
T ss_pred CCCC
Confidence 4443
No 80
>PLN03213 repressor of silencing 3; Provisional
Probab=99.35 E-value=2.4e-12 Score=128.20 Aligned_cols=77 Identities=17% Similarity=0.292 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCH--HHHHHHHHHhCCCCcccCCCC
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~--edA~~Al~~l~~~~~~~g~~g 106 (450)
...+|||+||++++|++||.++|..||. |++|.|++. || ||||||+|.+. +++++||+.||+.++ .|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGs--VkdVEIpRE---TG--RGFAFVEMssdddaEeeKAISaLNGAEW----KG 77 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGT--VDAVEFVRT---KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW----KG 77 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEecc---cC--CceEEEEecCCcHHHHHHHHHHhcCCee----cC
Confidence 4579999999999999999999999999 999999954 77 89999999987 789999999999999 59
Q ss_pred ceEEEeecCC
Q 013047 107 RTVKVAFAEP 116 (450)
Q Consensus 107 r~i~v~~a~~ 116 (450)
+.|+|..|++
T Consensus 78 R~LKVNKAKP 87 (759)
T PLN03213 78 GRLRLEKAKE 87 (759)
T ss_pred ceeEEeeccH
Confidence 9999998864
No 81
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=4.5e-12 Score=106.33 Aligned_cols=83 Identities=27% Similarity=0.381 Sum_probs=76.4
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
......|||.++..+++|++|.+.|..||+|++|.+..|+.|+..+|||+|+|++.++|++||++|||.+|.+.+|.|.+
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999877666
Q ss_pred EEe
Q 013047 205 RAR 207 (450)
Q Consensus 205 ~~~ 207 (450)
+..
T Consensus 149 ~Fv 151 (170)
T KOG0130|consen 149 CFV 151 (170)
T ss_pred EEe
Confidence 543
No 82
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=6.4e-12 Score=100.77 Aligned_cols=84 Identities=27% Similarity=0.397 Sum_probs=73.3
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCC
Q 013047 25 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 104 (450)
Q Consensus 25 ~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~ 104 (450)
.+.+.++.|||+|||+++|.|++.++|.+||+ |..|+|=. +...+|.|||.|++..||++|+.+|++..+
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~--IrQIRiG~----~k~TrGTAFVVYedi~dAk~A~dhlsg~n~---- 82 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGT--IRQIRIGN----TKETRGTAFVVYEDIFDAKKACDHLSGYNV---- 82 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccc--eEEEEecC----ccCcCceEEEEehHhhhHHHHHHHhccccc----
Confidence 45566899999999999999999999999999 99998876 455689999999999999999999999877
Q ss_pred CCceEEEeecCCCC
Q 013047 105 PERTVKVAFAEPLR 118 (450)
Q Consensus 105 ~gr~i~v~~a~~~~ 118 (450)
.++.+.|.+.++..
T Consensus 83 ~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 83 DNRYLVVLYYQPED 96 (124)
T ss_pred CCceEEEEecCHHH
Confidence 58888888775543
No 83
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=4.4e-13 Score=117.86 Aligned_cols=112 Identities=17% Similarity=0.411 Sum_probs=90.7
Q ss_pred HHHHHhCCCCcccCCCCceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCc
Q 013047 90 AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 169 (450)
Q Consensus 90 ~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~ 169 (450)
+-|..||..++-++-.. ++.|...-+ .+.=|||+|||.+.||.||..+|++||+|+.|.+++|..||++
T Consensus 8 k~i~~lne~Elq~g~~~---~~SWH~~Yk--------dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKS 76 (219)
T KOG0126|consen 8 KNIQKLNERELQLGIAD---KKSWHQEYK--------DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKS 76 (219)
T ss_pred HHHHHhhHHhhcccccc---ccchhhhcc--------cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcc
Confidence 44556666665433111 345543222 2357999999999999999999999999999999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEEeeCCCC
Q 013047 170 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPM 212 (450)
Q Consensus 170 rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~~~~~~~ 212 (450)
+||||+.|++..+..-|+..|||..|.++.|+|.-......|.
T Consensus 77 KGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Yk~pk 119 (219)
T KOG0126|consen 77 KGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNYKKPK 119 (219)
T ss_pred cceEEEEecCccceEEEEeccCCceecceeEEeeecccccCCc
Confidence 9999999999999999999999999999998887766665553
No 84
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=1.9e-13 Score=120.11 Aligned_cols=82 Identities=26% Similarity=0.465 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
.++--|||+|||+++||.||...|++||+ |.+|.|++|+. ||+|+||||+.|+++.....||..||+..| .++
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe--~vdinLiRDk~-TGKSKGFaFLcYEDQRSTILAVDN~NGiki----~gR 105 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGE--IVDINLIRDKK-TGKSKGFAFLCYEDQRSTILAVDNLNGIKI----LGR 105 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCc--eEEEEEEecCC-CCcccceEEEEecCccceEEEEeccCCcee----cce
Confidence 35778999999999999999999999999 99999999987 999999999999999999999999999888 599
Q ss_pred eEEEeecCC
Q 013047 108 TVKVAFAEP 116 (450)
Q Consensus 108 ~i~v~~a~~ 116 (450)
+|+|+....
T Consensus 106 tirVDHv~~ 114 (219)
T KOG0126|consen 106 TIRVDHVSN 114 (219)
T ss_pred eEEeeeccc
Confidence 999986543
No 85
>smart00360 RRM RNA recognition motif.
Probab=99.31 E-value=1.1e-11 Score=93.61 Aligned_cols=70 Identities=36% Similarity=0.587 Sum_probs=63.1
Q ss_pred EcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEE
Q 013047 35 VGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKV 111 (450)
Q Consensus 35 V~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v 111 (450)
|+|||..+++++|+++|++||. |..|++..++. ++.++|+|||+|.+.++|++|++.|++..+ .++.|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~--v~~~~i~~~~~-~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~----~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGK--IESVRLVRDKD-TGKSKGFAFVEFESEEDAEKALEALNGKEL----DGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCC--EeEEEEEeCCC-CCCCCceEEEEeCCHHHHHHHHHHcCCCee----CCcEEEe
Confidence 6799999999999999999999 99999998765 788999999999999999999999997766 4677765
No 86
>PLN03213 repressor of silencing 3; Provisional
Probab=99.30 E-value=7.2e-12 Score=124.82 Aligned_cols=75 Identities=12% Similarity=0.243 Sum_probs=68.9
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCH--HHHHHHHHHhCCCeecCCeeEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH--EAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~--e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
...+|||+||++.+++++|+++|+.||.|..|.|+ ++++ ||||||+|.+. +++.+||..|||.+++|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 45799999999999999999999999999999999 4566 99999999987 789999999999999999988876
Q ss_pred E
Q 013047 205 R 205 (450)
Q Consensus 205 ~ 205 (450)
+
T Consensus 85 A 85 (759)
T PLN03213 85 A 85 (759)
T ss_pred c
Confidence 4
No 87
>smart00362 RRM_2 RNA recognition motif.
Probab=99.29 E-value=1.3e-11 Score=93.42 Aligned_cols=71 Identities=23% Similarity=0.559 Sum_probs=64.9
Q ss_pred EEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 013047 130 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202 (450)
Q Consensus 130 ~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v 202 (450)
+|+|+|||..+++++|+++|++||.|..+.+..+. +.++++|||+|.+.++|++|++.|++..+.++.++|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998875 678899999999999999999999999998876544
No 88
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.29 E-value=1.9e-12 Score=125.42 Aligned_cols=165 Identities=20% Similarity=0.256 Sum_probs=118.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCC--CCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGV--EGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~--~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
.-.|-+++||+++|+.||.+||...-. +.++.|.+++.+ +|+..|-|||.|.++++|+.||.+..+. +| .+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp--dgrpTGdAFvlfa~ee~aq~aL~khrq~---iG--qR 233 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP--DGRPTGDAFVLFACEEDAQFALRKHRQN---IG--QR 233 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC--CCCcccceEEEecCHHHHHHHHHHHHHH---Hh--HH
Confidence 557888999999999999999973211 126677777765 6888999999999999999999763332 11 22
Q ss_pred eEEEeecC--------------CCCC--C------Cc----cccCCccEEEEcCCCCCchhHHHHHhhhccCc-eEE--E
Q 013047 108 TVKVAFAE--------------PLRE--P------DP----EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGD-VIR--I 158 (450)
Q Consensus 108 ~i~v~~a~--------------~~~~--~------~~----~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~-v~~--v 158 (450)
-|.+-.+. +... . .+ .......+|.+.+||++++.++|.+||..|-. |.. |
T Consensus 234 YIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gV 313 (508)
T KOG1365|consen 234 YIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGV 313 (508)
T ss_pred HHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhccccee
Confidence 22221110 0000 0 00 01122468999999999999999999998864 433 6
Q ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 013047 159 VLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202 (450)
Q Consensus 159 ~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v 202 (450)
.++.+ ..|+..|.|||+|.++|+|.+|..+.+.+..+.+-|.|
T Consensus 314 Hmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 314 HMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred EEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 67666 46788999999999999999999988887776665443
No 89
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4e-12 Score=114.92 Aligned_cols=88 Identities=26% Similarity=0.494 Sum_probs=80.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
....++|||++|-.++||.-|...|-.||. |++|.+..|-. +.+++|||||||+..|||.+||..||.+++ .+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGD--I~dIqiPlDye-sqkHRgFgFVefe~aEDAaaAiDNMnesEL----~G 79 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGD--IKDIQIPLDYE-SQKHRGFGFVEFEEAEDAAAAIDNMNESEL----FG 79 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccc--hhhcccccchh-cccccceeEEEeeccchhHHHhhcCchhhh----cc
Confidence 446789999999999999999999999999 99999999854 899999999999999999999999999999 49
Q ss_pred ceEEEeecCCCCCCC
Q 013047 107 RTVKVAFAEPLREPD 121 (450)
Q Consensus 107 r~i~v~~a~~~~~~~ 121 (450)
++|+|.+|.|.+...
T Consensus 80 rtirVN~AkP~kike 94 (298)
T KOG0111|consen 80 RTIRVNLAKPEKIKE 94 (298)
T ss_pred eeEEEeecCCccccC
Confidence 999999998866543
No 90
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.28 E-value=1.9e-11 Score=113.81 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=67.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
...+|||+||++.+|+++|++||+.||+ |++|+|++|. ..++||||+|++.++|+.|| .|++..| .++.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~--I~~V~I~~D~----et~gfAfVtF~d~~aaetAl-lLnGa~l----~d~~ 72 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGA--IEHVEIIRSG----EYACTAYVTFKDAYALETAV-LLSGATI----VDQR 72 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCC--eEEEEEecCC----CcceEEEEEECCHHHHHHHH-hcCCCee----CCce
Confidence 3579999999999999999999999999 9999999973 44589999999999999999 6999988 3788
Q ss_pred EEEeecC
Q 013047 109 VKVAFAE 115 (450)
Q Consensus 109 i~v~~a~ 115 (450)
|.|..+.
T Consensus 73 I~It~~~ 79 (243)
T PLN03121 73 VCITRWG 79 (243)
T ss_pred EEEEeCc
Confidence 8887654
No 91
>smart00360 RRM RNA recognition motif.
Probab=99.28 E-value=1.7e-11 Score=92.46 Aligned_cols=70 Identities=29% Similarity=0.579 Sum_probs=65.0
Q ss_pred EcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 013047 133 LDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202 (450)
Q Consensus 133 V~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v 202 (450)
|+||+..+++++|+++|++||.|..+.+..+..++.++++|||+|.+.++|++|++.|++..+.++.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6799999999999999999999999999998878889999999999999999999999999998876554
No 92
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.27 E-value=3.8e-11 Score=91.38 Aligned_cols=74 Identities=36% Similarity=0.587 Sum_probs=65.9
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEE
Q 013047 32 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKV 111 (450)
Q Consensus 32 ~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v 111 (450)
+|+|+|||..+++++|+++|+.+|. |..+.++.++. ...+++|||+|.+.++|+.|++.+++..+ .++.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~--i~~~~~~~~~~--~~~~~~~~v~f~s~~~a~~a~~~~~~~~~----~~~~~~v 72 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGK--VESVRIVRDKD--TKSKGFAFVEFEDEEDAEKALEALNGKEL----GGRPLRV 72 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCC--EEEEEEeeCCC--CCcceEEEEEECCHHHHHHHHHHhCCCeE----CCeEEEE
Confidence 5899999999999999999999998 99999998763 36789999999999999999999999875 4788877
Q ss_pred ee
Q 013047 112 AF 113 (450)
Q Consensus 112 ~~ 113 (450)
.+
T Consensus 73 ~~ 74 (74)
T cd00590 73 EF 74 (74)
T ss_pred eC
Confidence 53
No 93
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.25 E-value=1.5e-10 Score=112.06 Aligned_cols=168 Identities=14% Similarity=0.146 Sum_probs=130.5
Q ss_pred CCCeEEEcCCCC-CCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 29 DNDTLFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 29 ~~~~lyV~nLp~-~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
+...++|-+|.. .++.+.|.++|..||. |+.|++|+.+- |.|.||+.+..+.+.||..||+..+ .+.
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGN--V~rvkFmkTk~------gtamVemgd~~aver~v~hLnn~~l----fG~ 353 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGN--VERVKFMKTKP------GTAMVEMGDAYAVERAVTHLNNIPL----FGG 353 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCc--eeeEEEeeccc------ceeEEEcCcHHHHHHHHHHhccCcc----ccc
Confidence 467899999986 4889999999999999 99999999763 7799999999999999999999877 367
Q ss_pred eEEEeecCCC--------------------------------CCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCce
Q 013047 108 TVKVAFAEPL--------------------------------REPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDV 155 (450)
Q Consensus 108 ~i~v~~a~~~--------------------------------~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v 155 (450)
+|.|..+... ...+..+..++++|+.-|.|..+||+.|.++|......
T Consensus 354 kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~ 433 (494)
T KOG1456|consen 354 KLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVP 433 (494)
T ss_pred eEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCC
Confidence 7777654311 01122345567899999999999999999999887643
Q ss_pred -EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCe--eEEEEEEeeCC
Q 013047 156 -IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN--SKVKLRARLSN 210 (450)
Q Consensus 156 -~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~--i~v~v~~~~~~ 210 (450)
++|+|...+ + +..-.+++||++.++|..||.+||...|++.. ....+++..+.
T Consensus 434 ~~svkvFp~k-s-erSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfst 489 (494)
T KOG1456|consen 434 PTSVKVFPLK-S-ERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFST 489 (494)
T ss_pred cceEEeeccc-c-cccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecc
Confidence 456665544 2 23346899999999999999999999997643 33445554443
No 94
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.24 E-value=3.8e-11 Score=111.86 Aligned_cols=74 Identities=12% Similarity=0.159 Sum_probs=66.6
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
...+|||+||++.+|+++|++||+.||+|..|.|+.+. +..+||||+|+++++|+.|+ .|+|..|.+..|.|+-
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEe
Confidence 34789999999999999999999999999999999884 45689999999999999999 6999999999866654
No 95
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.23 E-value=4.2e-11 Score=114.65 Aligned_cols=79 Identities=28% Similarity=0.526 Sum_probs=74.7
Q ss_pred ccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 128 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 128 ~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
..+|||+||++.+++++|.++|.+||.|..|.|..++.++.++|+|||+|.+.++|..|++.|++..|.++.+.|....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5899999999999999999999999999999999998899999999999999999999999999999999987776643
No 96
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.22 E-value=2.3e-11 Score=127.21 Aligned_cols=111 Identities=22% Similarity=0.277 Sum_probs=89.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
++.++||||++|+.+++|+||.++|+.||+ |++|.|+.. +|+|||++....||++||.+|+...+ ..
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGe--iqSi~li~~-------R~cAfI~M~~RqdA~kalqkl~n~kv----~~ 484 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGE--IQSIILIPP-------RGCAFIKMVRRQDAEKALQKLSNVKV----AD 484 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhccc--ceeEeeccC-------CceeEEEEeehhHHHHHHHHHhcccc----cc
Confidence 456899999999999999999999999999 999999874 58999999999999999999998776 58
Q ss_pred ceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhh
Q 013047 107 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 150 (450)
Q Consensus 107 r~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~ 150 (450)
+.|+|.|+..+--..+-.......|=|.-|||+.-..+|+.+++
T Consensus 485 k~Iki~Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 485 KTIKIAWAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred eeeEEeeeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 99999999876554422222334455666788755555666654
No 97
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.20 E-value=1.7e-11 Score=115.23 Aligned_cols=75 Identities=23% Similarity=0.434 Sum_probs=68.5
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEEee
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 208 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~~~ 208 (450)
.+|||+|||.++++++|+.+|++||+|++|+|+++ |+||..|+...|+.||..|++..|+|.+|+|+..+..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999865 9999999999999999999999999998888777665
Q ss_pred CCC
Q 013047 209 SNP 211 (450)
Q Consensus 209 ~~~ 211 (450)
+++
T Consensus 75 sk~ 77 (346)
T KOG0109|consen 75 SKA 77 (346)
T ss_pred CCC
Confidence 443
No 98
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.19 E-value=1.4e-10 Score=88.22 Aligned_cols=73 Identities=29% Similarity=0.592 Sum_probs=66.1
Q ss_pred EEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 013047 130 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203 (450)
Q Consensus 130 ~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~ 203 (450)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ ..+++|||+|.+.++|+.|++.+++..+.++.++|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 4899999999999999999999999999999987655 678999999999999999999999999998876553
No 99
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.5e-11 Score=111.24 Aligned_cols=80 Identities=23% Similarity=0.485 Sum_probs=75.8
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
..++|||++|..+++|.-|...|-.||.|+.|.|+.|-++++.|+|+||+|+..|+|.+||..||+.+|-|+.|+|.+.+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999998887753
No 100
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=9.5e-12 Score=112.55 Aligned_cols=147 Identities=16% Similarity=0.236 Sum_probs=117.8
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCC
Q 013047 25 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 104 (450)
Q Consensus 25 ~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~ 104 (450)
...+..+||||.||...++|+-|.|+|-+-|+ |..|+|..+. .+..| ||||+|+++..+..|++.+|+.++
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGP--V~kv~ip~~~--d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l---- 74 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGP--VYKVGIPSGQ--DQEQK-FAYVFFPNENSVQLAGQLENGDDL---- 74 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCc--eEEEeCCCCc--cCCCc-eeeeecccccchhhhhhhcccchh----
Confidence 45566899999999999999999999999999 9999998875 46666 999999999999999999999887
Q ss_pred CCceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 013047 105 PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 184 (450)
Q Consensus 105 ~gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~ 184 (450)
.+.+|+|++-...... -|...++++.+.+.|+.-+.+..+.+..+.. ++.+.++||++.-..+.-
T Consensus 75 ~~~e~q~~~r~G~sha--------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P 139 (267)
T KOG4454|consen 75 EEDEEQRTLRCGNSHA--------------PLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVP 139 (267)
T ss_pred ccchhhcccccCCCcc--------------hhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCc
Confidence 3666666543211110 1556788888899999999999999988754 788899999998887777
Q ss_pred HHHHHhCCCee
Q 013047 185 ACINAINNKEF 195 (450)
Q Consensus 185 ~Ai~~l~g~~~ 195 (450)
.++...++.++
T Consensus 140 ~~~~~y~~l~~ 150 (267)
T KOG4454|consen 140 FALDLYQGLEL 150 (267)
T ss_pred HHhhhhcccCc
Confidence 77765555443
No 101
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=8.4e-11 Score=120.61 Aligned_cols=167 Identities=19% Similarity=0.348 Sum_probs=129.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhc-----------CCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDY-----------GVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 95 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~-----------G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l 95 (450)
+.+...++|++||..++++.+..||..- |+ .|..+.|-.. +.||||+|.+.++|..|+. +
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~-~~~s~~~n~~-------~nfa~ie~~s~~~at~~~~-~ 242 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGP-SFVSVQLNLE-------KNFAFIEFRSISEATEAMA-L 242 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCC-ceeeeeeccc-------ccceeEEecCCCchhhhhc-c
Confidence 3347899999999999999999999864 33 4555555443 4799999999999999985 4
Q ss_pred CCCCcccCCCCceEEEeecCCC------------------CCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEE
Q 013047 96 QKPDVVFGHPERTVKVAFAEPL------------------REPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR 157 (450)
Q Consensus 96 ~~~~~~~g~~gr~i~v~~a~~~------------------~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~ 157 (450)
+...+ .+..+++...... ............+++|++||...++.++++++..||.+..
T Consensus 243 ~~~~f----~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~ 318 (500)
T KOG0120|consen 243 DGIIF----EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKA 318 (500)
T ss_pred cchhh----CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchh
Confidence 44333 3555555322110 0011112234478999999999999999999999999999
Q ss_pred EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 158 IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 158 v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
..++.+..++-+++|||.+|.+......|++.|||..+.++.+.|+.+.
T Consensus 319 f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 319 FRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred heeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 9999999999999999999999999999999999999999886665543
No 102
>smart00361 RRM_1 RNA recognition motif.
Probab=99.14 E-value=1.6e-10 Score=88.94 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=54.4
Q ss_pred hHHHHHhhh----ccCceEEEE-EEecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 013047 142 ENQIRDQIK----GYGDVIRIV-LARNMST--AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202 (450)
Q Consensus 142 e~dL~~~F~----~~G~v~~v~-i~~d~~~--g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v 202 (450)
+++|+++|+ +||.|..|. |+.+..+ +.++|+|||+|++.++|.+|++.|||+.+.++.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678888888 999999995 7776666 889999999999999999999999999999987654
No 103
>smart00361 RRM_1 RNA recognition motif.
Probab=99.13 E-value=2.3e-10 Score=88.11 Aligned_cols=61 Identities=28% Similarity=0.350 Sum_probs=53.2
Q ss_pred HHHHHHHHh----hcCCCCeeEEE-EEeCCCCC--CCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEE
Q 013047 44 KEAIKQKLK----DYGVEGVENIN-LVSDIQHE--GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKV 111 (450)
Q Consensus 44 e~dL~~~F~----~~G~~~V~~i~-l~~d~~~t--g~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v 111 (450)
+++|+++|+ +||. |.+|. |+.++. + +.++|||||+|.+.++|++|++.||+..+ .++.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~--v~~v~~v~~~~~-~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~----~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGE--VGKINKIYIDNV-GYENHKRGNVYITFERSEDAARAIVDLNGRYF----DGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCC--eeEEEEEEeCCC-CCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE----CCEEEEe
Confidence 678999998 9999 99996 666654 4 88999999999999999999999999987 5788775
No 104
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.11 E-value=1.4e-10 Score=118.39 Aligned_cols=80 Identities=28% Similarity=0.472 Sum_probs=76.1
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEEee
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 208 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~~~ 208 (450)
.+|||+|+|++++|++|.++|++.|.|..++++.|++||+++||+|++|.+.++|+.|++.||+.++.++.++|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999888776543
No 105
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=4.4e-10 Score=90.31 Aligned_cols=73 Identities=11% Similarity=0.232 Sum_probs=66.1
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v 202 (450)
.+..|||.|||+.+|.+++-++|.+||.|..|+|-..++ -+|.|||.|++..+|++|++.|+|..+.++-+.|
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 456799999999999999999999999999999987654 4899999999999999999999999999986544
No 106
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.05 E-value=4e-10 Score=109.90 Aligned_cols=163 Identities=13% Similarity=0.197 Sum_probs=124.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
...++|++++.+++.++++..++...|. +..+.+..... ...+++++.|.|+..+.+..|++. .+..+.+ ...
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~--~~~~~~S~~~~-~~~sk~~~s~~f~~ks~~~~~l~~-s~~~~~~---~~~ 159 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGL--RVDARSSSLED-SLSSKGGLSVHFAGKSQFFAALEE-SGSKVLD---GNK 159 (285)
T ss_pred ccccccccccccchhhccccccchhhcC--cccchhhhhcc-ccccccceeeccccHHHHHHHHHh-hhccccc---ccc
Confidence 4779999999999999999999999997 66655554322 678999999999999999999964 4432222 222
Q ss_pred EEEeecCCCC-----CCCccccCCccEEE-EcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHH
Q 013047 109 VKVAFAEPLR-----EPDPEIMAHVKTVF-LDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA 182 (450)
Q Consensus 109 i~v~~a~~~~-----~~~~~~~~~~~~lf-V~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~ 182 (450)
+......... ...........+++ |++|+..+++++|+.+|..++.|..+.+..++.++..++|++|+|.+...
T Consensus 160 ~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~ 239 (285)
T KOG4210|consen 160 GEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNS 239 (285)
T ss_pred ccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchh
Confidence 2222222111 11111122345566 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeecCCe
Q 013047 183 AVACINAINNKEFSDGN 199 (450)
Q Consensus 183 A~~Ai~~l~g~~~~g~~ 199 (450)
++.++.. +...+.+..
T Consensus 240 ~~~~~~~-~~~~~~~~~ 255 (285)
T KOG4210|consen 240 KKLALND-QTRSIGGRP 255 (285)
T ss_pred HHHHhhc-ccCcccCcc
Confidence 9998876 677776664
No 107
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.04 E-value=8.4e-10 Score=80.91 Aligned_cols=56 Identities=32% Similarity=0.545 Sum_probs=49.8
Q ss_pred HHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeec
Q 013047 47 IKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 114 (450)
Q Consensus 47 L~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a 114 (450)
|.++|++||+ |++|++..+. +++|||+|.+.++|++|++.||+..+ .+++|+|+||
T Consensus 1 L~~~f~~fG~--V~~i~~~~~~------~~~a~V~f~~~~~A~~a~~~l~~~~~----~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGE--VKKIKIFKKK------RGFAFVEFASVEDAQKAIEQLNGRQF----NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS---EEEEEEETTS------TTEEEEEESSHHHHHHHHHHHTTSEE----TTEEEEEEEE
T ss_pred ChHHhCCccc--EEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEE----CCcEEEEEEC
Confidence 7899999999 9999998753 48999999999999999999999987 5899999886
No 108
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.04 E-value=1.9e-09 Score=109.38 Aligned_cols=77 Identities=18% Similarity=0.340 Sum_probs=63.1
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
.+|||.|||.++++++|+++|.+||.|+...|....-.++..+||||+|++.++++.||++- -..|.++++.|+.+.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKR 365 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecc
Confidence 46999999999999999999999999999888775434455599999999999999999764 556667665555543
No 109
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.00 E-value=1.9e-09 Score=79.05 Aligned_cols=55 Identities=22% Similarity=0.504 Sum_probs=48.6
Q ss_pred HHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 145 L~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
|.++|++||+|+.|.+..+. +++|||+|++.++|++|++.||+..+.|+.|+|.+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 67899999999999997652 68999999999999999999999999999877765
No 110
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.98 E-value=7.1e-10 Score=97.97 Aligned_cols=80 Identities=20% Similarity=0.326 Sum_probs=74.7
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
.+..+|||+||+..++++-|.++|-+.|.|+.+.|..|+.++..+|||||+|.++|+|+=||+.||...|-|+.|+|...
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999998776554
No 111
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=3.4e-11 Score=127.41 Aligned_cols=145 Identities=20% Similarity=0.244 Sum_probs=122.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceE
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 109 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i 109 (450)
..++||+||+..+.+.+|...|..++. ++.|.+.... ++++.+|.|+|+|...++|.+||.....+.+ +
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~--~e~vqi~~h~-n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-----g--- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGT--IEVVQIVIHK-NEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-----G--- 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccch--hhhHHHHHHh-hccccccceeeEeecCCchhhhhhhhhhhhh-----h---
Confidence 358899999999999999999999998 7777666333 3899999999999999999999975544432 2
Q ss_pred EEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 013047 110 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 189 (450)
Q Consensus 110 ~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~ 189 (450)
..+|+|.|+|+..|.++|+.++.++|.++.+.++..+ .++.+|.|+|.|.++.++.+++..
T Consensus 736 ------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s 796 (881)
T KOG0128|consen 736 ------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVAS 796 (881)
T ss_pred ------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhccc
Confidence 2478999999999999999999999999999877764 688999999999999999999988
Q ss_pred hCCCeecCCeeEEEE
Q 013047 190 INNKEFSDGNSKVKL 204 (450)
Q Consensus 190 l~g~~~~g~~i~v~v 204 (450)
++...+..+.+.|.+
T Consensus 797 ~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 797 VDVAGKRENNGEVQV 811 (881)
T ss_pred chhhhhhhcCccccc
Confidence 887777766544444
No 112
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=8.3e-10 Score=106.36 Aligned_cols=86 Identities=16% Similarity=0.311 Sum_probs=79.0
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
..+.+.|||.-|++-|+.++|+-+|+.||.|+.|.|+.|..|+.+-.+|||+|++.+++++|.-+|++..|+.+.|.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred EEeeCC
Q 013047 205 RARLSN 210 (450)
Q Consensus 205 ~~~~~~ 210 (450)
.-..++
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 554444
No 113
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.95 E-value=2.5e-09 Score=96.55 Aligned_cols=83 Identities=22% Similarity=0.353 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhc-CCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDY-GVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~-G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
.....++|..||.-+.+.+|..+|.++ |. |..++|-+++. ||.|||||||||++.+.|+-|.+.||+..++ +
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~--v~r~rlsRnkr-TGNSKgYAFVEFEs~eVA~IaAETMNNYLl~----e 119 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGT--VTRFRLSRNKR-TGNSKGYAFVEFESEEVAKIAAETMNNYLLM----E 119 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCe--eEEEEeecccc-cCCcCceEEEEeccHHHHHHHHHHhhhhhhh----h
Confidence 346789999999999999999999999 65 88888878877 9999999999999999999999999998774 7
Q ss_pred ceEEEeecCCC
Q 013047 107 RTVKVAFAEPL 117 (450)
Q Consensus 107 r~i~v~~a~~~ 117 (450)
+.|.|++..+.
T Consensus 120 ~lL~c~vmppe 130 (214)
T KOG4208|consen 120 HLLECHVMPPE 130 (214)
T ss_pred heeeeEEeCch
Confidence 88888877554
No 114
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=5.3e-09 Score=100.90 Aligned_cols=79 Identities=22% Similarity=0.402 Sum_probs=68.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
...++|||++|-..++|.+|+++|.+||+ |.+|.++... ++|||+|.+.+.|++|.+++-...++ ++.
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGe--irsi~~~~~~-------~CAFv~ftTR~aAE~Aae~~~n~lvI---~G~ 293 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGE--IRSIRILPRK-------GCAFVTFTTREAAEKAAEKSFNKLVI---NGF 293 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCC--eeeEEeeccc-------ccceeeehhhHHHHHHHHhhcceeee---cce
Confidence 34689999999889999999999999999 9999998753 69999999999999999876665554 589
Q ss_pred eEEEeecCCCC
Q 013047 108 TVKVAFAEPLR 118 (450)
Q Consensus 108 ~i~v~~a~~~~ 118 (450)
.|+|.|..+++
T Consensus 294 Rl~i~Wg~~~~ 304 (377)
T KOG0153|consen 294 RLKIKWGRPKQ 304 (377)
T ss_pred EEEEEeCCCcc
Confidence 99999998833
No 115
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.91 E-value=1.7e-09 Score=105.96 Aligned_cols=118 Identities=21% Similarity=0.268 Sum_probs=86.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceE
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 109 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i 109 (450)
..+|||++||.++++++|+++|++||. |..+.++.|.. +...+||+||+|.+.+.+++++. ..-++| .++.|
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~--v~~~~~~~d~~-~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~----~gk~v 168 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGK--VADVVIMYDKT-TSRPRGFGFVTFDSEDSVDKVTL-QKFHDF----NGKKV 168 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccce--eEeeEEeeccc-ccccccceeeEeccccccceecc-cceeee----cCcee
Confidence 459999999999999999999999998 99999999976 89999999999999999999874 233334 48999
Q ss_pred EEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCce
Q 013047 110 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDV 155 (450)
Q Consensus 110 ~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v 155 (450)
.|+.|.++.................++....+.-.|..+|..|+.+
T Consensus 169 evkrA~pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~ 214 (311)
T KOG4205|consen 169 EVKRAIPKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPV 214 (311)
T ss_pred eEeeccchhhccccccccccccccccccccccccccchhccccCcc
Confidence 9999998876554322111122222343333444455556555543
No 116
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=4e-09 Score=101.69 Aligned_cols=82 Identities=21% Similarity=0.387 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
....+.|||..|.+-+|++||+-+|+.||+ |++|.+++|.. ||.+.-||||||++.++.++|.-+|+...| ..
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~--i~sceVIRD~k-tgdsLqyaFiEFen~escE~AyFKMdNvLI----DD 308 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGK--IVSCEVIRDRK-TGDSLQYAFIEFENKESCEQAYFKMDNVLI----DD 308 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhccc--ceeeeEEeccc-ccchhheeeeeecchhhHHHHHhhhcceee----cc
Confidence 445789999999999999999999999999 99999999977 999999999999999999999999998766 68
Q ss_pred ceEEEeecC
Q 013047 107 RTVKVAFAE 115 (450)
Q Consensus 107 r~i~v~~a~ 115 (450)
+.|.|+++.
T Consensus 309 rRIHVDFSQ 317 (479)
T KOG0415|consen 309 RRIHVDFSQ 317 (479)
T ss_pred ceEEeehhh
Confidence 999999874
No 117
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=1.7e-09 Score=115.13 Aligned_cols=157 Identities=17% Similarity=0.276 Sum_probs=128.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
...++|||++||+..+++.+|+..|..+|. |.+|.|.+-+. ++-.-|+||.|.+...+-.|+..+.+..|.-
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gk--ve~VDiKtP~~--~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~---- 440 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGK--VEEVDIKTPHI--KTESAYAFVSLLNTDMTPSAKFEESGPLIGN---- 440 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhcc--ccccccccCCC--CcccchhhhhhhccccCcccchhhcCCcccc----
Confidence 345899999999999999999999999999 99999887654 3444689999999999999998888876632
Q ss_pred ceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 013047 107 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 186 (450)
Q Consensus 107 r~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~A 186 (450)
-.+++.+..+ ....++.|+|++|..|+....|..+|..||.|..|.+-. ..-|++|.+++...+++|
T Consensus 441 g~~r~glG~~-------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a 507 (975)
T KOG0112|consen 441 GTHRIGLGQP-------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAA 507 (975)
T ss_pred Cccccccccc-------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhh
Confidence 2344443333 123567899999999999999999999999999887743 345899999999999999
Q ss_pred HHHhCCCeecCCeeEEEE
Q 013047 187 INAINNKEFSDGNSKVKL 204 (450)
Q Consensus 187 i~~l~g~~~~g~~i~v~v 204 (450)
+..|-+..|.+-...+.|
T Consensus 508 ~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 508 THDMRGAPLGGPPRRLRV 525 (975)
T ss_pred HHHHhcCcCCCCCccccc
Confidence 999999999876544333
No 118
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.85 E-value=4.1e-09 Score=97.70 Aligned_cols=165 Identities=19% Similarity=0.234 Sum_probs=123.2
Q ss_pred CCeEEEcCCCCCCcHHH-H--HHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 30 NDTLFVGNICNTWTKEA-I--KQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~d-L--~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
--.+++.++-.++..+- | ...|+.+-. ....+++++. .+.-++++|+.|.....-.++-..-+++.+ ..
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~--L~ktk~v~~~--p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki----~~ 167 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPS--LVKTKLVRDR--PQPIRPEAFESFKASDALLKAETEKEKKKI----GK 167 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchh--hhhhhhhhcC--CCccCcccccCcchhhhhhhhccccccccc----cC
Confidence 34567777766666555 3 677777655 6667777764 567789999999977666666544444443 12
Q ss_pred ceEEEeecCCCCCC-CccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 013047 107 RTVKVAFAEPLREP-DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 185 (450)
Q Consensus 107 r~i~v~~a~~~~~~-~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~ 185 (450)
..|++......... ..+......+||.+.|..+++++.|...|.+|-.....+++++..|++++||+||.|.+.+++..
T Consensus 168 ~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~r 247 (290)
T KOG0226|consen 168 PPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVR 247 (290)
T ss_pred cceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHH
Confidence 33555433322221 12334456799999999999999999999999888888999999999999999999999999999
Q ss_pred HHHHhCCCeecCCeeEE
Q 013047 186 CINAINNKEFSDGNSKV 202 (450)
Q Consensus 186 Ai~~l~g~~~~g~~i~v 202 (450)
|+..|+|+.++.+.|++
T Consensus 248 Amrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 248 AMREMNGKYVGSRPIKL 264 (290)
T ss_pred HHHhhcccccccchhHh
Confidence 99999999998887544
No 119
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.81 E-value=3.9e-08 Score=80.00 Aligned_cols=85 Identities=22% Similarity=0.289 Sum_probs=72.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEE
Q 013047 31 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 110 (450)
Q Consensus 31 ~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~ 110 (450)
+||.|+|||...|.++|.+++...-.+...-+.|..|.. ++.+.|||||-|.+.++|.+..+.+++..+..-...+.+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~-~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFK-NKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeecc-CCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 699999999999999999999886544476778888866 8899999999999999999999999998775444577788
Q ss_pred EeecCC
Q 013047 111 VAFAEP 116 (450)
Q Consensus 111 v~~a~~ 116 (450)
|.+|.-
T Consensus 81 i~yAri 86 (97)
T PF04059_consen 81 ISYARI 86 (97)
T ss_pred EehhHh
Confidence 888753
No 120
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.81 E-value=5.9e-09 Score=98.52 Aligned_cols=84 Identities=25% Similarity=0.407 Sum_probs=75.3
Q ss_pred ccCCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCccc
Q 013047 23 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 102 (450)
Q Consensus 23 ~~~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~ 102 (450)
+...+.+.+.|||+|+.+.+|.++|..+|+.||. |..|+|..|.. ++++|||+||+|.+.+.++.|++ |++.+|
T Consensus 94 ~~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~--i~~~ti~~d~~-~~~~k~~~yvef~~~~~~~~ay~-l~gs~i-- 167 (231)
T KOG4209|consen 94 ERQKEVDAPSVWVGNVDFLVTLTKIELHFESCGG--INRVTVPKDKF-RGHPKGFAYVEFSSYELVEEAYK-LDGSEI-- 167 (231)
T ss_pred hhhhccCCceEEEeccccccccchhhheeeccCC--ccceeeecccc-CCCcceeEEEecccHhhhHHHhh-cCCccc--
Confidence 4456778999999999999999999999999999 99999999876 77899999999999999999998 999988
Q ss_pred CCCCceEEEeec
Q 013047 103 GHPERTVKVAFA 114 (450)
Q Consensus 103 g~~gr~i~v~~a 114 (450)
.++.|+|.+.
T Consensus 168 --~~~~i~vt~~ 177 (231)
T KOG4209|consen 168 --PGPAIEVTLK 177 (231)
T ss_pred --ccccceeeee
Confidence 5788887654
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.78 E-value=1.8e-08 Score=91.03 Aligned_cols=79 Identities=25% Similarity=0.439 Sum_probs=72.6
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhcc-CceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGY-GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~-G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
....++|..+|.-+.+.+|..+|.++ |.|..+++.+++.||.++|||||+|++++.|+-|.+.||+..|.++-+.|.|-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 44578999999999999999999999 77888888899999999999999999999999999999999999998888774
No 122
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.77 E-value=9.4e-08 Score=93.26 Aligned_cols=153 Identities=15% Similarity=0.096 Sum_probs=108.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
.++..|-.++|||..++.+|..||+..-. +.--..+.. +..++..|.+.|.|.+.|.-+.|+|+..... ..+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~i--a~gg~aKOG-~~qgrRnge~lvrf~d~e~RdlalkRhkhh~-----g~r 129 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNI--ANGGRALCL-NAQGRRNGEALVRFVDPEGRDLALKRHKHHM-----GTR 129 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhc--cccceeeee-hhhhccccceEEEecCchhhhhhhHhhhhhc-----cCC
Confidence 34566788999999999999999998653 322222222 2267888999999999999999998643321 367
Q ss_pred eEEEeecCCCCC--------C---CccccCCccEEEEcCCCCCchhHHHHHhhhcc----CceEEEEEEecCCCCCcceE
Q 013047 108 TVKVAFAEPLRE--------P---DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY----GDVIRIVLARNMSTAKRKDY 172 (450)
Q Consensus 108 ~i~v~~a~~~~~--------~---~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~----G~v~~v~i~~d~~~g~~rG~ 172 (450)
.|.|-.+....- . ..-.....-.|.+.+||+++++.++.+||..- +.++.|.++.. .+++..|-
T Consensus 130 yievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGd 208 (508)
T KOG1365|consen 130 YIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGD 208 (508)
T ss_pred ceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccc
Confidence 777765543211 0 00111223356789999999999999999632 23455555544 47889999
Q ss_pred EEEEeCCHHHHHHHHHH
Q 013047 173 GFIDFSTHEAAVACINA 189 (450)
Q Consensus 173 afV~F~s~e~A~~Ai~~ 189 (450)
|||.|..+++|+.||.+
T Consensus 209 AFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 209 AFVLFACEEDAQFALRK 225 (508)
T ss_pred eEEEecCHHHHHHHHHH
Confidence 99999999999999965
No 123
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=9.3e-09 Score=95.83 Aligned_cols=86 Identities=19% Similarity=0.297 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
.+-+.|||-.||.+..+.||.+.|-.||. |++.|++.|.. |.+||-|+||.|.+...|++||.+||+..| .-+
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGh--ivSaKVFvDRA-TNQSKCFGFVSfDNp~SaQaAIqAMNGFQI----GMK 355 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGH--IVSAKVFVDRA-TNQSKCFGFVSFDNPASAQAAIQAMNGFQI----GMK 355 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccc--eeeeeeeehhc-cccccceeeEecCCchhHHHHHHHhcchhh----hhh
Confidence 45789999999999999999999999999 99999999977 999999999999999999999999999877 357
Q ss_pred eEEEeecCCCCCC
Q 013047 108 TVKVAFAEPLREP 120 (450)
Q Consensus 108 ~i~v~~a~~~~~~ 120 (450)
.|+|..-+++...
T Consensus 356 RLKVQLKRPkdan 368 (371)
T KOG0146|consen 356 RLKVQLKRPKDAN 368 (371)
T ss_pred hhhhhhcCccccC
Confidence 8888877766543
No 124
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.74 E-value=3e-08 Score=100.76 Aligned_cols=81 Identities=21% Similarity=0.353 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
...+.|||.+|...+...||+++|++||. |+..+++++.. +--.+.|+||++.+.++|.+||+.|+.+++ +++
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGK--VvGAKVVTNaR-sPGaRCYGfVTMSts~eAtkCI~hLHrTEL----HGr 475 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGK--VVGAKVVTNAR-SPGARCYGFVTMSTSAEATKCIEHLHRTEL----HGR 475 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcc--eeceeeeecCC-CCCcceeEEEEecchHHHHHHHHHhhhhhh----cce
Confidence 34689999999999999999999999999 99999999876 444567999999999999999999999998 699
Q ss_pred eEEEeecC
Q 013047 108 TVKVAFAE 115 (450)
Q Consensus 108 ~i~v~~a~ 115 (450)
.|.|..+.
T Consensus 476 mISVEkaK 483 (940)
T KOG4661|consen 476 MISVEKAK 483 (940)
T ss_pred eeeeeecc
Confidence 99998774
No 125
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=1.6e-08 Score=103.15 Aligned_cols=147 Identities=17% Similarity=0.171 Sum_probs=97.7
Q ss_pred cccCCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcc
Q 013047 22 CGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVV 101 (450)
Q Consensus 22 ~~~~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~ 101 (450)
.........++|+|-|||.++++++|+++|+.||+ |++|+.-.. .+|.+||+|-|..+|+.|+++|+..++
T Consensus 67 np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGe--ir~ir~t~~------~~~~~~v~FyDvR~A~~Alk~l~~~~~- 137 (549)
T KOG4660|consen 67 NPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGE--IREIRETPN------KRGIVFVEFYDVRDAERALKALNRREI- 137 (549)
T ss_pred CCCcccCccceEEEEecCCcCCHHHHHHHHHhhcc--hhhhhcccc------cCceEEEEEeehHhHHHHHHHHHHHHh-
Confidence 33334556889999999999999999999999999 999766554 458999999999999999999999988
Q ss_pred cCCCCceEEEeecCCCCCC------------------CccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEec
Q 013047 102 FGHPERTVKVAFAEPLREP------------------DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARN 163 (450)
Q Consensus 102 ~g~~gr~i~v~~a~~~~~~------------------~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d 163 (450)
.++.|+.......... -+..- ...++|+ .|++..+..-++..|+-+|.++. ..
T Consensus 138 ---~~~~~k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~-~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~--- 208 (549)
T KOG4660|consen 138 ---AGKRIKRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGW-PRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RE--- 208 (549)
T ss_pred ---hhhhhcCCCcccccchhcccchhhhhccchhhcCCCCCC-cCCccee-eeccchhhhhhhcchhccCcccc-cc---
Confidence 5777773211111000 00000 0112333 28777777666666776776554 21
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHH
Q 013047 164 MSTAKRKDYGFIDFSTHEAAVACIN 188 (450)
Q Consensus 164 ~~~g~~rG~afV~F~s~e~A~~Ai~ 188 (450)
+....---||+|.+..++..+..
T Consensus 209 --~~~~~hq~~~~~~~~~s~a~~~~ 231 (549)
T KOG4660|consen 209 --TPLLNHQRFVEFADNRSYAFSEP 231 (549)
T ss_pred --ccchhhhhhhhhccccchhhccc
Confidence 22222245777877777744443
No 126
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.71 E-value=2.4e-08 Score=101.41 Aligned_cols=77 Identities=19% Similarity=0.450 Sum_probs=70.9
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
+.|||++|...|-..+|+.+|++||+|+-.+|+.+..+--.++|+||++.+.++|.+||+.|+-++|.|+.|.|+-.
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 57999999999999999999999999999999998777677899999999999999999999999999998766554
No 127
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.68 E-value=4.1e-09 Score=103.69 Aligned_cols=152 Identities=17% Similarity=0.267 Sum_probs=121.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEE
Q 013047 31 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 110 (450)
Q Consensus 31 ~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~ 110 (450)
++||++||...++.+||..+|...-. .+..-.|+.. ||+||.+.+...|.+|++.++++.-+ +++.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~-~~~g~fl~k~--------gyafvd~pdq~wa~kaie~~sgk~el---qGkr~e 69 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKI-PGSGQFLVKS--------GYAFVDCPDQQWANKAIETLSGKVEL---QGKRQE 69 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccC-CCCcceeeec--------ceeeccCCchhhhhhhHHhhchhhhh---cCceee
Confidence 47999999999999999999987533 2333355543 89999999999999999999987543 578888
Q ss_pred EeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 013047 111 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190 (450)
Q Consensus 111 v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l 190 (450)
|..+-+++. .++++.|.|+|....|+.|..++.+||.|+.|.++.. .......-|++.+.+.+..||.+|
T Consensus 70 ~~~sv~kkq-------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai~kl 139 (584)
T KOG2193|consen 70 VEHSVPKKQ-------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAIHKL 139 (584)
T ss_pred ccchhhHHH-------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHHHhh
Confidence 887766544 4566889999999999999999999999998876432 112334458899999999999999
Q ss_pred CCCeecCCeeEEEE
Q 013047 191 NNKEFSDGNSKVKL 204 (450)
Q Consensus 191 ~g~~~~g~~i~v~v 204 (450)
++..+....+++..
T Consensus 140 ~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 140 NGPQLENQHLKVGY 153 (584)
T ss_pred cchHhhhhhhhccc
Confidence 99999887655544
No 128
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.68 E-value=8.6e-08 Score=90.57 Aligned_cols=81 Identities=21% Similarity=0.257 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
+...++|+|.||+..++++||+|+|++|+. ++.+-|..++ .|.+.|.|-|.|...+||++||+.+|+..+ ++
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~--~~r~~vhy~~--~G~s~Gta~v~~~r~~DA~~avk~~~gv~l----dG 151 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGE--LKRVAVHYDR--AGRSLGTADVSFNRRDDAERAVKKYNGVAL----DG 151 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhcc--ceEEeeccCC--CCCCCccceeeecchHhHHHHHHHhcCccc----CC
Confidence 334578999999999999999999999997 9999998886 799999999999999999999999999555 57
Q ss_pred ceEEEeecC
Q 013047 107 RTVKVAFAE 115 (450)
Q Consensus 107 r~i~v~~a~ 115 (450)
+.+++....
T Consensus 152 ~~mk~~~i~ 160 (243)
T KOG0533|consen 152 RPMKIEIIS 160 (243)
T ss_pred ceeeeEEec
Confidence 888877554
No 129
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.65 E-value=4.9e-08 Score=102.76 Aligned_cols=73 Identities=18% Similarity=0.439 Sum_probs=67.2
Q ss_pred ccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 128 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 128 ~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
++||||++|+..++|+||..+|+.||+|.+|.++. ++++|||++...++|.+|+.+|+...+..+.|+|.|.+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 47999999999999999999999999999998865 58999999999999999999999999999888777754
No 130
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.60 E-value=1.3e-07 Score=89.27 Aligned_cols=81 Identities=10% Similarity=0.232 Sum_probs=73.9
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
...+|.|.||+..|+++||+++|.+|+.++.+.|.+++ ++.+.|.|-|.|+..++|.+|++.+++..++|+.+++.+..
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 45789999999999999999999999999999999984 78899999999999999999999999999999998887765
Q ss_pred ee
Q 013047 207 RL 208 (450)
Q Consensus 207 ~~ 208 (450)
..
T Consensus 161 ~~ 162 (243)
T KOG0533|consen 161 SP 162 (243)
T ss_pred Cc
Confidence 43
No 131
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.55 E-value=1.7e-07 Score=90.67 Aligned_cols=74 Identities=27% Similarity=0.410 Sum_probs=61.7
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCCeecCCeeEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI-NNKEFSDGNSKVK 203 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l-~g~~~~g~~i~v~ 203 (450)
....++|||++|...++|.+|+++|.+||+|..|.++.. +++|||+|.+.++|+.|.+++ +...|+|..|+|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 345689999999999999999999999999999999875 569999999999999988765 4455677765555
Q ss_pred E
Q 013047 204 L 204 (450)
Q Consensus 204 v 204 (450)
|
T Consensus 299 W 299 (377)
T KOG0153|consen 299 W 299 (377)
T ss_pred e
Confidence 4
No 132
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.55 E-value=2.1e-07 Score=85.44 Aligned_cols=80 Identities=19% Similarity=0.349 Sum_probs=70.7
Q ss_pred CccEEEEcCCCCCchhHHHHH----hhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRD----QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~----~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v 202 (450)
+..||||.||+..+..++|+. +|++||+|..|.... +.+.+|-|||.|.+.+.|..|+.+|+|..+-|+.++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 455999999999999999988 999999999988765 4678999999999999999999999999999998887
Q ss_pred EEEEeeC
Q 013047 203 KLRARLS 209 (450)
Q Consensus 203 ~v~~~~~ 209 (450)
..+...+
T Consensus 85 qyA~s~s 91 (221)
T KOG4206|consen 85 QYAKSDS 91 (221)
T ss_pred ecccCcc
Confidence 7765443
No 133
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.53 E-value=1.2e-07 Score=98.50 Aligned_cols=165 Identities=15% Similarity=0.057 Sum_probs=116.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
+...|-+++.++++.+.|+++||...- |..+.|..+.. .+...|-++|+|....++++|++.-+-..+ .+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~~---~~~~~l~~~~v-~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~-----~R~ 380 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGRN---AQSTDLSENRV-APPQTGRKTVMFTPQAPFQNAFTRNPSDDV-----NRP 380 (944)
T ss_pred hhheeeecccccccccchhhhhcCccc---ccccchhhhhc-CCCcCCceEEEecCcchHHHHHhcCchhhh-----hcc
Confidence 345566789999999999999998754 66666665542 233368899999999999999986443322 566
Q ss_pred EEEeecCCC--------CCC--------------------------CccccCCccEEEEcCCCCCchhHHHHHhhhccCc
Q 013047 109 VKVAFAEPL--------REP--------------------------DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGD 154 (450)
Q Consensus 109 i~v~~a~~~--------~~~--------------------------~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~ 154 (450)
|.|..+... ... .........+|||..||.+++++++.++|.+.-.
T Consensus 381 ~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~ 460 (944)
T KOG4307|consen 381 FQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAA 460 (944)
T ss_pred eeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhh
Confidence 666422110 000 0011223468999999999999999999999888
Q ss_pred eEE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 013047 155 VIR-IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203 (450)
Q Consensus 155 v~~-v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~ 203 (450)
|++ |.|... -+++.++.|||+|..++++.+|+..-+.+.+..+.|+|.
T Consensus 461 Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 461 VEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred hhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 877 555554 467888999999999888888876555555555555543
No 134
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.47 E-value=4.6e-07 Score=94.38 Aligned_cols=76 Identities=9% Similarity=0.142 Sum_probs=64.2
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
+.|-+.|+|++++-+||.+||..|-.+-.-.+++--+.+...|.|.|.|++.++|.+|.+.|+++.|..+++++.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3788999999999999999999997664333333336789999999999999999999999999999998766654
No 135
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.45 E-value=5.9e-07 Score=85.01 Aligned_cols=83 Identities=14% Similarity=0.274 Sum_probs=76.1
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....+.+||+|+...+|.++|+..|+.||.|..|.|..+..++.+++|+||+|.+.+.++.|+. ||+.+|.+..+.++.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3456799999999999999999999999999999999999998999999999999999999997 999999999988877
Q ss_pred EEee
Q 013047 205 RARL 208 (450)
Q Consensus 205 ~~~~ 208 (450)
+...
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6544
No 136
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.40 E-value=3.2e-07 Score=85.33 Aligned_cols=82 Identities=22% Similarity=0.415 Sum_probs=72.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
|.++.-+||++.|..++|++.|...|.+|-. ....++++|++ |+++|||+||.|.+.+|+..|++.|++..+ .
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfps--f~~akviRdkR-TgKSkgygfVSf~~pad~~rAmrem~gkyV----g 258 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPS--FQKAKVIRDKR-TGKSKGYGFVSFRDPADYVRAMREMNGKYV----G 258 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccc--hhhcccccccc-ccccccceeeeecCHHHHHHHHHhhccccc----c
Confidence 4556789999999999999999999999987 88899999988 999999999999999999999999999877 3
Q ss_pred CceEEEeec
Q 013047 106 ERTVKVAFA 114 (450)
Q Consensus 106 gr~i~v~~a 114 (450)
.+.|++..+
T Consensus 259 srpiklRkS 267 (290)
T KOG0226|consen 259 SRPIKLRKS 267 (290)
T ss_pred cchhHhhhh
Confidence 666666543
No 137
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.39 E-value=1e-06 Score=86.08 Aligned_cols=79 Identities=25% Similarity=0.299 Sum_probs=70.9
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceE--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCC
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVI--------RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~--------~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~ 198 (450)
...+|||.+|+..+++++|.++|.+++.|+ .|.|.++++|++.++-|.|+|++...|++||+.++++.+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 456899999999999999999999999885 477888999999999999999999999999999999999997
Q ss_pred eeEEEEE
Q 013047 199 NSKVKLR 205 (450)
Q Consensus 199 ~i~v~v~ 205 (450)
.|+|.+.
T Consensus 145 ~ikvs~a 151 (351)
T KOG1995|consen 145 TIKVSLA 151 (351)
T ss_pred Cchhhhh
Confidence 6655443
No 138
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.37 E-value=5.5e-07 Score=91.69 Aligned_cols=75 Identities=20% Similarity=0.291 Sum_probs=60.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceE
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 109 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i 109 (450)
-.+|||+|||.++|+++|+++|+.||. |+...|..... .+....||||+|++.++++.||++- .+.++ +++|
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~--Ik~~~I~vr~~-~~~~~~fgFV~f~~~~~~~~~i~As---p~~ig--~~kl 359 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGP--IKEGGIQVRSP-GGKNPCFGFVEFENAAAVQNAIEAS---PLEIG--GRKL 359 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhccc--ccccceEEecc-CCCcCceEEEEEeecchhhhhhhcC---ccccC--CeeE
Confidence 456999999999999999999999999 99887776432 2334489999999999999999864 34444 6777
Q ss_pred EEe
Q 013047 110 KVA 112 (450)
Q Consensus 110 ~v~ 112 (450)
.|+
T Consensus 360 ~Ve 362 (419)
T KOG0116|consen 360 NVE 362 (419)
T ss_pred EEE
Confidence 765
No 139
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.30 E-value=4.4e-07 Score=84.04 Aligned_cols=63 Identities=21% Similarity=0.502 Sum_probs=58.5
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCe
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 199 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~ 199 (450)
.+|||++|++.+.+++|++||.+||.|..|.+. .+|+||+|++..+|..||..||+++|.+..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~ 64 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGER 64 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceeccee
Confidence 368999999999999999999999999998883 568999999999999999999999999876
No 140
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.23 E-value=1.1e-06 Score=85.90 Aligned_cols=85 Identities=26% Similarity=0.311 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCee--------EEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVE--------NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 98 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~--------~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~ 98 (450)
...+.+|||-+|+.++|+++|.++|.++++ |+ .|+|.+|+ +|++.||-|.|.|++...|++||..++..
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~--ikrnK~t~kPki~~y~dk-eT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGV--IKRNKRTGKPKIKIYTDK-ETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcce--eccCCCCCCcchhccccc-cccCcCCceeeeecChhhhhhhhhhhccc
Confidence 445779999999999999999999999997 54 47788887 59999999999999999999999999999
Q ss_pred CcccCCCCceEEEeecCCCC
Q 013047 99 DVVFGHPERTVKVAFAEPLR 118 (450)
Q Consensus 99 ~~~~g~~gr~i~v~~a~~~~ 118 (450)
++ .+.+|+|..|+.+.
T Consensus 140 df----~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 140 DF----CGNTIKVSLAERRT 155 (351)
T ss_pred cc----cCCCchhhhhhhcc
Confidence 98 47889988776443
No 141
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.19 E-value=1.2e-05 Score=73.71 Aligned_cols=72 Identities=25% Similarity=0.414 Sum_probs=59.3
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCC
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARN-MSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d-~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~ 198 (450)
..++|||.+||.++...+|..+|..|---+.+.|... +.....+-+|||+|.+.+.|.+|+.+|||..|+-.
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE 105 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPE 105 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccc
Confidence 4689999999999999999999999866666655443 22223457999999999999999999999999753
No 142
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.18 E-value=7e-07 Score=81.34 Aligned_cols=78 Identities=12% Similarity=0.245 Sum_probs=69.6
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
...+|||.||...++|+-|.++|-+-|.|.+|.|..++. ++.+ ||||.|+++-...-|++.|||..+.+..+++++..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 457999999999999999999999999999999988754 4455 99999999999999999999999999988777654
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.15 E-value=1.3e-05 Score=65.19 Aligned_cols=70 Identities=19% Similarity=0.370 Sum_probs=62.5
Q ss_pred cEEEEcCCCCCchhHHHHHhhhcc--CceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCC
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~--G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~ 198 (450)
+||.|.|+|...|.++|.+++... |....+-++.|..+..+.|||||.|.+++.|.+..+.++|+.+...
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~ 73 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF 73 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence 589999999999999999998764 6667778888888899999999999999999999999999999753
No 144
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.14 E-value=3.3e-06 Score=81.69 Aligned_cols=75 Identities=9% Similarity=0.195 Sum_probs=67.4
Q ss_pred ccEEEEcCCCCCchhHHHHHhhhccC--ceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 013047 128 VKTVFLDGVPPHWKENQIRDQIKGYG--DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202 (450)
Q Consensus 128 ~~~lfV~nLp~~~te~dL~~~F~~~G--~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v 202 (450)
..++||+||-|++|++||.+.+...| .+.++++..++.++.++|||+|...+.++.++.++.|..++|.|..-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 35799999999999999999998777 4677888999999999999999999999999999999999999987544
No 145
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.13 E-value=3.8e-06 Score=88.01 Aligned_cols=81 Identities=22% Similarity=0.361 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCC--CCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ--HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~--~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
..+.|||+||+..++++.|...|..||+ |.+|+||.-.. +.-.-+-++||.|-+..||++|++.|++..++ .
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgP--lasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~----~ 246 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGP--LASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM----E 246 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCc--ccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee----e
Confidence 3678999999999999999999999999 99999997432 23456679999999999999999999998874 7
Q ss_pred ceEEEeecC
Q 013047 107 RTVKVAFAE 115 (450)
Q Consensus 107 r~i~v~~a~ 115 (450)
.++++-|+.
T Consensus 247 ~e~K~gWgk 255 (877)
T KOG0151|consen 247 YEMKLGWGK 255 (877)
T ss_pred eeeeecccc
Confidence 888888884
No 146
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.13 E-value=1.6e-06 Score=88.94 Aligned_cols=72 Identities=17% Similarity=0.291 Sum_probs=64.3
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~ 201 (450)
.-...+|+|-||+..+++++|+.+|+.||+|..|..-. ..++.+||+|-+..+|++|+++|+..+|.++.++
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 33567999999999999999999999999999865533 4689999999999999999999999999998766
No 147
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.12 E-value=1.3e-06 Score=85.59 Aligned_cols=157 Identities=14% Similarity=0.155 Sum_probs=111.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCC--CCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE--GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~t--g~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
...|-|.||.+++|.+.+..+|..+|. |.++.|+.+.... ....-.|||.|.+...+..|. +|..+.|+ ++
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGk--I~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfv----dr 79 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGK--IPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFV----DR 79 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccc--cccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceee----ee
Confidence 448999999999999999999999999 9999999753321 234458999999999888886 45555443 45
Q ss_pred eEEEeec-CCCCCC----------------------------------Cc----------------cccCCccEEEEcCC
Q 013047 108 TVKVAFA-EPLREP----------------------------------DP----------------EIMAHVKTVFLDGV 136 (450)
Q Consensus 108 ~i~v~~a-~~~~~~----------------------------------~~----------------~~~~~~~~lfV~nL 136 (450)
.|.|-.. +.-... .+ .+.....+|.|.+|
T Consensus 80 aliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl 159 (479)
T KOG4676|consen 80 ALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSL 159 (479)
T ss_pred eEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcc
Confidence 5544321 100000 00 00011157889999
Q ss_pred CCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCC
Q 013047 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198 (450)
Q Consensus 137 p~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~ 198 (450)
...+...++.+.|+.+|+|....+... -..-+|-|+|........|+. ++|.++.-.
T Consensus 160 ~~~~~l~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr-~~gre~k~q 216 (479)
T KOG4676|consen 160 ISAAILPESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALR-SHGRERKRQ 216 (479)
T ss_pred hhhhcchhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHH-hcchhhhhh
Confidence 999999999999999999877666432 234567799999988888885 677777643
No 148
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.00 E-value=1.8e-05 Score=76.83 Aligned_cols=79 Identities=15% Similarity=0.289 Sum_probs=69.3
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceE--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCC
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVI--------RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~--------~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~ 198 (450)
..+.|||+|||.++|.+++.++|+++|.|. .|+|..+. .|..+|=|++.|--.+++.-||+.|++..|.|.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 345799999999999999999999999876 46777774 589999999999999999999999999999998
Q ss_pred eeEEEEEE
Q 013047 199 NSKVKLRA 206 (450)
Q Consensus 199 ~i~v~v~~ 206 (450)
.|+|+.+.
T Consensus 212 ~~rVerAk 219 (382)
T KOG1548|consen 212 KLRVERAK 219 (382)
T ss_pred EEEEehhh
Confidence 87776643
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.94 E-value=1.8e-05 Score=65.75 Aligned_cols=59 Identities=19% Similarity=0.395 Sum_probs=39.7
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~ 193 (450)
..|+|.++...++.++|+++|++|+.|..|.+... ...|+|.|.+.++|++|++++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhc
Confidence 36889999999999999999999999999999664 336999999999999999887655
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.91 E-value=1.7e-05 Score=83.20 Aligned_cols=84 Identities=11% Similarity=0.255 Sum_probs=73.2
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS---TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~---~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~ 201 (450)
...++.|||+||+..++++.|...|..||.|..|+|+.-++ ..+.+.++||.|-+..+|++|++.|+|..+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 34567899999999999999999999999999999997653 345678999999999999999999999999998887
Q ss_pred EEEEEee
Q 013047 202 VKLRARL 208 (450)
Q Consensus 202 v~v~~~~ 208 (450)
+.+.++.
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 7776543
No 151
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.82 E-value=0.0001 Score=57.63 Aligned_cols=71 Identities=27% Similarity=0.291 Sum_probs=46.7
Q ss_pred CeEEEcCCCCCCcHHHHH----HHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 31 DTLFVGNICNTWTKEAIK----QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 31 ~~lyV~nLp~~~te~dL~----~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
+.|+|.|||.+.+...|+ +++..||- .|.+| . .+.|+|.|.+.+.|+.|+|.|++.++ .+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGG-kVl~v--~---------~~tAilrF~~~~~A~RA~KRmegEdV----fG 66 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGG-KVLSV--S---------GGTAILRFPNQEFAERAQKRMEGEDV----FG 66 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT---EEE-------------TT-EEEEESSHHHHHHHHHHHTT--S----SS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCC-EEEEE--e---------CCEEEEEeCCHHHHHHHHHhhccccc----cc
Confidence 479999999988766554 66667873 45555 1 15799999999999999999999988 48
Q ss_pred ceEEEeecCCC
Q 013047 107 RTVKVAFAEPL 117 (450)
Q Consensus 107 r~i~v~~a~~~ 117 (450)
..|.|.+....
T Consensus 67 ~kI~v~~~~~~ 77 (90)
T PF11608_consen 67 NKISVSFSPKN 77 (90)
T ss_dssp S--EEESS--S
T ss_pred ceEEEEEcCCc
Confidence 99999987443
No 152
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.76 E-value=4.1e-05 Score=76.29 Aligned_cols=69 Identities=13% Similarity=0.274 Sum_probs=57.6
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEec---CCCCC----------cceEEEEEeCCHHHHHHHHHHhCC
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARN---MSTAK----------RKDYGFIDFSTHEAAVACINAINN 192 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d---~~~g~----------~rG~afV~F~s~e~A~~Ai~~l~g 192 (450)
.+.++|.+-|||.+-.-+.|.++|..+|.|+.|.|+.- +.+.+ .+-+|||+|++.+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 36789999999999999999999999999999999865 32221 256899999999999999988764
Q ss_pred Ce
Q 013047 193 KE 194 (450)
Q Consensus 193 ~~ 194 (450)
..
T Consensus 309 e~ 310 (484)
T KOG1855|consen 309 EQ 310 (484)
T ss_pred hh
Confidence 44
No 153
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.69 E-value=0.00016 Score=56.46 Aligned_cols=67 Identities=12% Similarity=0.291 Sum_probs=45.6
Q ss_pred cEEEEcCCCCCchhHH----HHHhhhccC-ceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 013047 129 KTVFLDGVPPHWKENQ----IRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203 (450)
Q Consensus 129 ~~lfV~nLp~~~te~d----L~~~F~~~G-~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~ 203 (450)
..|+|.|||.+.+... |++++..+| +|..| +.+.|+|.|.+++.|.+|.+.|+|..+-|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4689999999877555 567777886 45554 23579999999999999999999999999987765
Q ss_pred EE
Q 013047 204 LR 205 (450)
Q Consensus 204 v~ 205 (450)
..
T Consensus 73 ~~ 74 (90)
T PF11608_consen 73 FS 74 (90)
T ss_dssp SS
T ss_pred Ec
Confidence 53
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.66 E-value=0.0001 Score=61.25 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=39.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCC
Q 013047 31 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 98 (450)
Q Consensus 31 ~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~ 98 (450)
..|.|.++...++.++|+++|++||. |.-|.+.... -.|+|.|.+.++|++|++++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~--V~yVD~~~G~-------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGE--VAYVDFSRGD-------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS----EEEEE--TT--------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCC--cceEEecCCC-------CEEEEEECCcchHHHHHHHHHhc
Confidence 36899999999999999999999998 9988887643 36999999999999999876654
No 155
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.64 E-value=3.9e-06 Score=89.76 Aligned_cols=157 Identities=15% Similarity=0.158 Sum_probs=114.5
Q ss_pred CCeEEEcCCCCCCcHH-HHHHHHhhcCCCCeeEEEEEeCCCCCCCeee-EEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 30 NDTLFVGNICNTWTKE-AIKQKLKDYGVEGVENINLVSDIQHEGLSRG-FAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~-dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG-~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
...+.+.++-+...+. .++..|..++. |+.|++...- ...... +.+++++...+++.|... .+..+ ..+
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~--vekv~~p~~g--~k~h~q~~~~~~~s~~~~~esat~p-a~~~~----a~~ 641 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGN--VEKVNGPKRG--FKAHEQPQQQKVQSKHGSAESATVP-AGGAL----ANR 641 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccc--cccccCcccc--ccccccchhhhhhccccchhhcccc-ccccc----CCc
Confidence 4566777887776655 67889999998 9999887521 112222 789999999999988753 33333 356
Q ss_pred eEEEeecCCCCCCCcc-----ccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHH
Q 013047 108 TVKVAFAEPLREPDPE-----IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA 182 (450)
Q Consensus 108 ~i~v~~a~~~~~~~~~-----~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~ 182 (450)
.+.|..++++...... ......++||+||+..+.+.+|...|..++.+..|.|.....+++.+|.|+|+|...+.
T Consensus 642 ~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~ 721 (881)
T KOG0128|consen 642 SAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEH 721 (881)
T ss_pred cccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCc
Confidence 6666666554432211 11234689999999999999999999999988888777666678899999999999999
Q ss_pred HHHHHHHhCCCee
Q 013047 183 AVACINAINNKEF 195 (450)
Q Consensus 183 A~~Ai~~l~g~~~ 195 (450)
+.+||+..+...+
T Consensus 722 ~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 722 AGAAVAFRDSCFF 734 (881)
T ss_pred hhhhhhhhhhhhh
Confidence 9999975444433
No 156
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.62 E-value=4.5e-05 Score=74.69 Aligned_cols=82 Identities=28% Similarity=0.470 Sum_probs=69.2
Q ss_pred CCeEE-EcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 30 NDTLF-VGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 30 ~~~ly-V~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
..++| |++|+.++++++|.++|..+|. |..|++..++. ++.++|||+|+|.+.+++..++.. +...+ .+++
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~--i~~~r~~~~~~-s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~----~~~~ 255 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGE--ITSVRLPTDEE-SGDSKGFAYVDFSAGNSKKLALND-QTRSI----GGRP 255 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCc--ceeeccCCCCC-ccchhhhhhhhhhhchhHHHHhhc-ccCcc----cCcc
Confidence 44555 9999999999999999999999 99999998875 999999999999999999999875 55444 3788
Q ss_pred EEEeecCCCCC
Q 013047 109 VKVAFAEPLRE 119 (450)
Q Consensus 109 i~v~~a~~~~~ 119 (450)
+.+....+...
T Consensus 256 ~~~~~~~~~~~ 266 (285)
T KOG4210|consen 256 LRLEEDEPRPK 266 (285)
T ss_pred cccccCCCCcc
Confidence 88887766544
No 157
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.0002 Score=73.67 Aligned_cols=79 Identities=22% Similarity=0.236 Sum_probs=63.4
Q ss_pred CCCCCeEEEcCCCCC------CcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCc
Q 013047 27 SEDNDTLFVGNICNT------WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 100 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~------~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~ 100 (450)
+.-.+.|+|-|+|.- .-+.-|..+|+++|+ |.++.+..+. .|..+||.|+||++..+|++||+.||+..+
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk--~vn~~~P~~e--~ggtkG~lf~E~~~~~~A~~aVK~l~G~~l 130 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGK--IVNMYYPIDE--EGGTKGYLFVEYASMRDAKKAVKSLNGKRL 130 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhcc--ccceeeccCc--cCCeeeEEEEEecChhhHHHHHHhccccee
Confidence 344678999999962 335567789999998 9998888776 566999999999999999999999999987
Q ss_pred ccCCCCceEEEe
Q 013047 101 VFGHPERTVKVA 112 (450)
Q Consensus 101 ~~g~~gr~i~v~ 112 (450)
- +..++.|.
T Consensus 131 d---knHtf~v~ 139 (698)
T KOG2314|consen 131 D---KNHTFFVR 139 (698)
T ss_pred c---ccceEEee
Confidence 4 34555554
No 158
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.58 E-value=5.6e-05 Score=73.36 Aligned_cols=70 Identities=16% Similarity=0.328 Sum_probs=61.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCc
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 100 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~ 100 (450)
.-.+||+||-|.+|++||.+.+...|...+.+||++.+.. +|++||||+|...+...+++.++.|..++|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~-NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~i 149 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRT-NGQSKGYALLVLNSDAAVKQTMEILPTKTI 149 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhccc-CCcccceEEEEecchHHHHHHHHhccccee
Confidence 3468999999999999999999998866677888887754 899999999999999999999988887766
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.45 E-value=0.00033 Score=67.86 Aligned_cols=78 Identities=22% Similarity=0.466 Sum_probs=60.0
Q ss_pred CccEEEEcCCCCCchhHH----H--HHhhhccCceEEEEEEecCCCCCcc-eE--EEEEeCCHHHHHHHHHHhCCCeecC
Q 013047 127 HVKTVFLDGVPPHWKENQ----I--RDQIKGYGDVIRIVLARNMSTAKRK-DY--GFIDFSTHEAAVACINAINNKEFSD 197 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~d----L--~~~F~~~G~v~~v~i~~d~~~g~~r-G~--afV~F~s~e~A~~Ai~~l~g~~~~g 197 (450)
+.+-+||-+|+..+-.++ | .++|.+||+|..|.|-+......+. +. .+|+|.+.|+|++||.+++|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345689999988766555 3 3889999999999886654222221 22 3999999999999999999999999
Q ss_pred CeeEEEE
Q 013047 198 GNSKVKL 204 (450)
Q Consensus 198 ~~i~v~v 204 (450)
+.|++..
T Consensus 193 r~lkatY 199 (480)
T COG5175 193 RVLKATY 199 (480)
T ss_pred ceEeeec
Confidence 9877654
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.42 E-value=0.00039 Score=50.25 Aligned_cols=53 Identities=13% Similarity=0.278 Sum_probs=42.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHH
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al 92 (450)
++.|-|.+++.+.. ++|..+|.+||+ |.++.+-.. .-..+|+|++..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~-~~vl~~F~~fGe--I~~~~~~~~-------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLA-EEVLEHFASFGE--IVDIYVPES-------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHH-HHHHHHHHhcCC--EEEEEcCCC-------CcEEEEEECCHHHHHhhC
Confidence 35788999997755 556669999999 999877632 248999999999999985
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.38 E-value=0.00044 Score=67.02 Aligned_cols=92 Identities=13% Similarity=0.229 Sum_probs=66.9
Q ss_pred CcccccCCCCCCCeEEEcCCCCCCcHHHH------HHHHhhcCCCCeeEEEEEeCCCCCCCeeeE--EEEEeCCHHHHHH
Q 013047 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAI------KQKLKDYGVEGVENINLVSDIQHEGLSRGF--AFVMFSCHVDAMA 90 (450)
Q Consensus 19 ~k~~~~~~~~~~~~lyV~nLp~~~te~dL------~~~F~~~G~~~V~~i~l~~d~~~tg~skG~--aFVeF~~~edA~~ 90 (450)
.|++.-....+.+-|||-+|++.+..|++ .++|.+||. |+.|.+-+.........+. .+|+|.+.|||..
T Consensus 103 rkhlsniRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGk--I~KIvvNkkt~s~nst~~h~gvYITy~~kedAar 180 (480)
T COG5175 103 RKHLSNIRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGK--IKKIVVNKKTSSLNSTASHAGVYITYSTKEDAAR 180 (480)
T ss_pred ccccccceeeecceeEEecCCCCCCcccccccccchhhhhhccc--eeEEEecccccccccccccceEEEEecchHHHHH
Confidence 44444444556778999999988776662 489999999 9888776532101111122 4999999999999
Q ss_pred HHHHhCCCCcccCCCCceEEEeecCC
Q 013047 91 AYKRLQKPDVVFGHPERTVKVAFAEP 116 (450)
Q Consensus 91 Al~~l~~~~~~~g~~gr~i~v~~a~~ 116 (450)
||++.+++.+ +|+.|+..+...
T Consensus 181 cIa~vDgs~~----DGr~lkatYGTT 202 (480)
T COG5175 181 CIAEVDGSLL----DGRVLKATYGTT 202 (480)
T ss_pred HHHHhccccc----cCceEeeecCch
Confidence 9999999876 689999887643
No 162
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.26 E-value=0.00079 Score=63.24 Aligned_cols=94 Identities=16% Similarity=0.221 Sum_probs=76.9
Q ss_pred HHHHHHHHhCCCCcccCCCCceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCC
Q 013047 87 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST 166 (450)
Q Consensus 87 dA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~ 166 (450)
-|+.|..+|+++.. .++.++|.|+. .+.|+|.||+.-++-+.|.+.|+.||.|+...++.|. .
T Consensus 6 ~ae~ak~eLd~~~~----~~~~lr~rfa~------------~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r 68 (275)
T KOG0115|consen 6 LAEIAKRELDGRFP----KGRSLRVRFAM------------HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-R 68 (275)
T ss_pred HHHHHHHhcCCCCC----CCCceEEEeec------------cceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-c
Confidence 46666667888866 68999999984 2679999999999999999999999999877776663 5
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhCCCeecC
Q 013047 167 AKRKDYGFIDFSTHEAAVACINAINNKEFSD 197 (450)
Q Consensus 167 g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g 197 (450)
++..+.++|+|...-.|.+|+..+...-|.+
T Consensus 69 ~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 69 GKPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred ccccccchhhhhcchhHHHHHHHhccCcccc
Confidence 6778899999999999999998775444433
No 163
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.16 E-value=0.00063 Score=63.86 Aligned_cols=105 Identities=18% Similarity=0.123 Sum_probs=84.8
Q ss_pred hhHHHHHhhCCCcccCCcccccCCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEe
Q 013047 3 QLFLIYILIFPLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 82 (450)
Q Consensus 3 ~~~~~~le~~~~~~~~~k~~~~~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF 82 (450)
++.+++-..+.....+++.+.+.-... ..|+|.||..-+.-+.|.+-|+.||. |....++.|. .++..+-++|+|
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg~--~e~av~~vD~--r~k~t~eg~v~~ 79 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFGP--IERAVAKVDD--RGKPTREGIVEF 79 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcCc--cchheeeecc--cccccccchhhh
Confidence 566777777888888999999877766 89999999999999999999999999 8888777775 577788999999
Q ss_pred CCHHHHHHHHHHhCCCCcccCCCCceEEEe
Q 013047 83 SCHVDAMAAYKRLQKPDVVFGHPERTVKVA 112 (450)
Q Consensus 83 ~~~edA~~Al~~l~~~~~~~g~~gr~i~v~ 112 (450)
...-.|.+|+..+...-+.....++++-|.
T Consensus 80 ~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 80 AKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred hcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 999999999988765544333234444443
No 164
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0013 Score=67.53 Aligned_cols=63 Identities=22% Similarity=0.282 Sum_probs=57.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHh-hcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLK-DYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 94 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~-~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~ 94 (450)
..+||||++||.-+|.++|..+|+ -||. |.-+.|=+|+. -+-.||-|=|+|.+...-.+||++
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGg--V~yaGIDtD~k-~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGG--VLYVGIDTDPK-LKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCc--eEEEEeccCcc-cCCCCCcceeeecccHHHHHHHhh
Confidence 478999999999999999999999 5898 99999999854 678999999999999999999974
No 165
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.12 E-value=0.0025 Score=47.33 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=47.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhc-CCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDY-GVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 95 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~-G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l 95 (450)
..+|+|.+|. +++.+||+.+|..| .......|.++.|. .|=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt--------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT--------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC--------cEEEEECCHHHHHHHHHcC
Confidence 4689999984 58999999999999 11126789999884 4889999999999999865
No 166
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.03 E-value=0.00047 Score=68.92 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=56.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeC---CC-CCCC--------eeeEEEEEeCCHHHHHHHHHHh
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD---IQ-HEGL--------SRGFAFVMFSCHVDAMAAYKRL 95 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d---~~-~tg~--------skG~aFVeF~~~edA~~Al~~l 95 (450)
..++||.+-|||.+-.-+.|.++|..+|. |+.|+|+.- +. ..+. .+-+|||||+..+.|.+|.+.|
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~--IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGS--IKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccc--eeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 46899999999999999999999999999 999999864 21 1121 2568999999999999999877
Q ss_pred CC
Q 013047 96 QK 97 (450)
Q Consensus 96 ~~ 97 (450)
+.
T Consensus 307 ~~ 308 (484)
T KOG1855|consen 307 NP 308 (484)
T ss_pred ch
Confidence 54
No 167
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.95 E-value=0.0031 Score=65.10 Aligned_cols=84 Identities=21% Similarity=0.212 Sum_probs=72.7
Q ss_pred hhHHHHHhhCCCcccCCcccccCCCCCCCeEEEcCCCCCCcHHHHHHHHhh--cCCCCeeEEEEEeCCCCCCCeeeEEEE
Q 013047 3 QLFLIYILIFPLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKD--YGVEGVENINLVSDIQHEGLSRGFAFV 80 (450)
Q Consensus 3 ~~~~~~le~~~~~~~~~k~~~~~~~~~~~~lyV~nLp~~~te~dL~~~F~~--~G~~~V~~i~l~~d~~~tg~skG~aFV 80 (450)
+|+...|-+.|+..+..|-+++.+..+.++|.|+-||.++-.|+|+.+|+. |=. +++|.+-.+. -=||
T Consensus 148 dLI~Evlresp~VqvDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk--~iscefa~N~--------nWyI 217 (684)
T KOG2591|consen 148 DLIVEVLRESPNVQVDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPK--VISCEFAHND--------NWYI 217 (684)
T ss_pred HHHHHHHhcCCCceeccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCC--ceeeeeeecC--------ceEE
Confidence 577778888899999999999999999999999999999999999999986 545 8888877653 3799
Q ss_pred EeCCHHHHHHHHHHhC
Q 013047 81 MFSCHVDAMAAYKRLQ 96 (450)
Q Consensus 81 eF~~~edA~~Al~~l~ 96 (450)
+|++.+||+.|.+.|.
T Consensus 218 Tfesd~DAQqAykylr 233 (684)
T KOG2591|consen 218 TFESDTDAQQAYKYLR 233 (684)
T ss_pred EeecchhHHHHHHHHH
Confidence 9999999999987543
No 168
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.0021 Score=66.42 Aligned_cols=70 Identities=16% Similarity=0.334 Sum_probs=58.6
Q ss_pred ccEEEEcCCCCCc------hhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCC
Q 013047 128 VKTVFLDGVPPHW------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198 (450)
Q Consensus 128 ~~~lfV~nLp~~~------te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~ 198 (450)
...|+|.|+|.-- -..-|..+|+++|+|+.+.++.+.+++ .+|+.|++|++..+|+.|++.|||+.|+-+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 4578888887532 244567899999999999999887665 899999999999999999999999998643
No 169
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.88 E-value=0.0026 Score=45.94 Aligned_cols=52 Identities=13% Similarity=0.513 Sum_probs=41.5
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 187 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai 187 (450)
+.|-|.+.+.+..+. |..+|..||+|+.+.+. ....+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 467788888776654 55588899999998885 23568999999999999985
No 170
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.78 E-value=0.00061 Score=64.04 Aligned_cols=62 Identities=16% Similarity=0.370 Sum_probs=50.7
Q ss_pred HHHHHhhh-ccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 143 NQIRDQIK-GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 143 ~dL~~~F~-~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
++|..+|+ +||+|+++.|..+. .-.-+|-++|.|...++|++|++.||+.++.|+.|.+++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 45555555 99999999776653 2245788999999999999999999999999999888774
No 171
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.73 E-value=0.0036 Score=59.82 Aligned_cols=62 Identities=18% Similarity=0.323 Sum_probs=50.0
Q ss_pred hhHHHHHhhhccCceEEEEEEecCCCCCc-ceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 013047 141 KENQIRDQIKGYGDVIRIVLARNMSTAKR-KDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202 (450)
Q Consensus 141 te~dL~~~F~~~G~v~~v~i~~d~~~g~~-rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v 202 (450)
-++++++.+++||.|..|.|...+..-.- .--.||+|+..++|.+|+-.|||..|.|+.+..
T Consensus 299 lede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 299 LEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 36778899999999999988877532211 224799999999999999999999999986543
No 172
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.52 E-value=0.0014 Score=61.51 Aligned_cols=73 Identities=21% Similarity=0.418 Sum_probs=61.5
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCC--------CCc----ceEEEEEeCCHHHHHHHHHHhCCCe
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST--------AKR----KDYGFIDFSTHEAAVACINAINNKE 194 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~--------g~~----rG~afV~F~s~e~A~~Ai~~l~g~~ 194 (450)
..-.|||+++|+.+....|+++|++||+|-.|-+.....+ +.+ --.+.|+|.+...|+.+.+.||++.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999998887765433 111 1357899999999999999999999
Q ss_pred ecCCe
Q 013047 195 FSDGN 199 (450)
Q Consensus 195 ~~g~~ 199 (450)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 173
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.29 E-value=0.011 Score=46.26 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=42.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 013047 31 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 97 (450)
Q Consensus 31 ~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~ 97 (450)
...+|. +|..|...||.++|+.||. ..|.++.| ..|||...+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~---I~VsWi~d--------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQ---IYVSWIND--------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCC---EEEEEECT--------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCc---EEEEEEcC--------CcEEEEeecHHHHHHHHHHhcc
Confidence 345565 9999999999999999996 56777776 3699999999999999988765
No 174
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.25 E-value=0.031 Score=61.28 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=3.6
Q ss_pred CCCCCCCCCC
Q 013047 279 FDNRYTEFHG 288 (450)
Q Consensus 279 ~~~~~~~~~g 288 (450)
+.++.+.|.+
T Consensus 1243 yrnpgggyrg 1252 (1282)
T KOG0921|consen 1243 YRNPGGGYRG 1252 (1282)
T ss_pred CCCCCCCccC
Confidence 3333333333
No 175
>PF08081 RBM1CTR: RBM1CTR (NUC064) family; InterPro: IPR012604 This region is found in RBM1-like RNA binding hnRNPs [].
Probab=96.11 E-value=0.0062 Score=41.17 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 013047 337 SYRRQPFSQGEDFDRPFIGRQVDDPYFYD 365 (450)
Q Consensus 337 p~r~~~~~p~~~~~~~~~~~~~~~~y~~~ 365 (450)
||||.+.++++|.+.+++ ||+|++|
T Consensus 21 PPrRe~~~srRd~y~sPR----ddgYstk 45 (45)
T PF08081_consen 21 PPRREPMPSRRDDYLSPR----DDGYSTK 45 (45)
T ss_pred CCCCCCCCcccccccCcc----cccccCC
Confidence 334444444444444444 9999765
No 176
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.10 E-value=0.0041 Score=58.51 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=57.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCC--------CCeee----EEEEEeCCHHHHHHHHHHhCC
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE--------GLSRG----FAFVMFSCHVDAMAAYKRLQK 97 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~t--------g~skG----~aFVeF~~~edA~~Al~~l~~ 97 (450)
...|||++||+.++-.-|+++|+.||. |-.|.|-.... + +.++. -+.|||.+...|..+.+.||+
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGe--VGRvylqpE~~-s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn 150 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGE--VGRVYLQPEDD-SKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNN 150 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccc--cceEEecchhh-HHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCC
Confidence 468999999999999999999999999 99998876533 2 22222 378999999999999999999
Q ss_pred CCc
Q 013047 98 PDV 100 (450)
Q Consensus 98 ~~~ 100 (450)
..|
T Consensus 151 ~~I 153 (278)
T KOG3152|consen 151 TPI 153 (278)
T ss_pred Ccc
Confidence 876
No 177
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.00 E-value=0.02 Score=49.93 Aligned_cols=56 Identities=14% Similarity=0.428 Sum_probs=44.8
Q ss_pred HHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEEe
Q 013047 143 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 207 (450)
Q Consensus 143 ~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~~ 207 (450)
.+|.+.|.+||+|.=|+++.+ .-+|+|.+-+.|.+|+ .|+|.++.|+.++|.++..
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCc
Confidence 467788999999887777654 4799999999999999 5999999999988888654
No 178
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.92 E-value=0.0045 Score=58.33 Aligned_cols=62 Identities=24% Similarity=0.391 Sum_probs=48.4
Q ss_pred HHHHHHHh-hcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeec
Q 013047 45 EAIKQKLK-DYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 114 (450)
Q Consensus 45 ~dL~~~F~-~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a 114 (450)
++|...|+ +||+ |++++|..+. .-.-+|.++|.|...|+|++|++.||+..+ .+++|...+.
T Consensus 83 Ed~f~E~~~kygE--iee~~Vc~Nl--~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~----~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGE--IEELNVCDNL--GDHLVGNVYVKFRSEEDAEAALEDLNNRWY----NGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhh--hhhhhhhccc--chhhhhhhhhhcccHHHHHHHHHHHcCccc----cCCcceeeec
Confidence 44444445 8998 9998776643 345678999999999999999999999987 5788777654
No 179
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.91 E-value=0.03 Score=41.63 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=44.1
Q ss_pred ccEEEEcCCCCCchhHHHHHhhhcc---CceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 013047 128 VKTVFLDGVPPHWKENQIRDQIKGY---GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190 (450)
Q Consensus 128 ~~~lfV~nLp~~~te~dL~~~F~~~---G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l 190 (450)
..+|+|.+|. +.+.++|+.+|..| .....|..+.|. .|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4589999986 57788999999998 124567777763 4889999999999999765
No 180
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.80 E-value=0.0057 Score=62.10 Aligned_cols=60 Identities=12% Similarity=0.144 Sum_probs=49.8
Q ss_pred hhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEEe
Q 013047 141 KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 207 (450)
Q Consensus 141 te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~~ 207 (450)
+-++|...|.+||+|+.|.|-.. .-.|.|+|.+..+|-+|. +.++..|+++-|+|.|...
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEecC
Confidence 56889999999999999988554 346999999999997775 5788999999988887543
No 181
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.79 E-value=0.055 Score=44.43 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=47.5
Q ss_pred ccEEEEcCCCCCchhHHHHHhhhccCceEEEEEE-ecC------CCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCee
Q 013047 128 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLA-RNM------STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 200 (450)
Q Consensus 128 ~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~-~d~------~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i 200 (450)
..-|.|-+.|.. ....|.+.|++||.|.+..-+ .+. ..-....+..|+|+++.+|++||. .||..|.+..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 345778888877 556778899999998776411 000 001235689999999999999995 79999988754
No 182
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.77 E-value=0.0079 Score=62.66 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=59.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhh-cCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKD-YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~-~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
.++.|+|.||-.-.|.-.|++++.. +|+ |++.+|-+ -|-.|||.|.+.++|.+.+.+||+..+-.+ ..+
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~--Vee~WmDk-------IKShCyV~yss~eEA~atr~AlhnV~WP~s-NPK 512 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGN--VEEFWMDK-------IKSHCYVSYSSVEEAAATREALHNVQWPPS-NPK 512 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCc--hHHHHHHH-------hhcceeEecccHHHHHHHHHHHhccccCCC-CCc
Confidence 3789999999999999999999994 666 88774322 235799999999999999999999766444 355
Q ss_pred eEEEeec
Q 013047 108 TVKVAFA 114 (450)
Q Consensus 108 ~i~v~~a 114 (450)
.|.+.|.
T Consensus 513 ~L~adf~ 519 (718)
T KOG2416|consen 513 HLIADFV 519 (718)
T ss_pred eeEeeec
Confidence 5666554
No 183
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.68 E-value=0.076 Score=45.90 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=57.2
Q ss_pred CCCCeEEEcCCCCCC----cHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccC
Q 013047 28 EDNDTLFVGNICNTW----TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 103 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~----te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g 103 (450)
..-.||.|+-|..++ +.+.|...++.||+ |++|++.-. -.|.|.|++...|-+|+.+++...
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGp--I~SVT~cGr--------qsavVvF~d~~SAC~Av~Af~s~~---- 149 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGP--IQSVTLCGR--------QSAVVVFKDITSACKAVSAFQSRA---- 149 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCC--cceeeecCC--------ceEEEEehhhHHHHHHHHhhcCCC----
Confidence 345788887776664 34456677889999 999998743 259999999999999999988754
Q ss_pred CCCceEEEeecCC
Q 013047 104 HPERTVKVAFAEP 116 (450)
Q Consensus 104 ~~gr~i~v~~a~~ 116 (450)
.+..+.+.|...
T Consensus 150 -pgtm~qCsWqqr 161 (166)
T PF15023_consen 150 -PGTMFQCSWQQR 161 (166)
T ss_pred -CCceEEeecccc
Confidence 378888887653
No 184
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.56 E-value=0.22 Score=41.69 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=49.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCc
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 100 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~ 100 (450)
...+.|...|.-++.++|..+.+.+- ..|..++|++|. ..++=.+.|+|.+.++|.+..+.+|++.+
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~-~~i~~~riird~---~pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFR-EDIEHIRIIRDG---TPNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhccc-ccEEEEEEeeCC---CCceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 34445555555566667776666654 358889999974 23556799999999999999999999887
No 185
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.55 E-value=0.016 Score=57.69 Aligned_cols=73 Identities=14% Similarity=0.242 Sum_probs=58.1
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS---TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~---~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v 202 (450)
..|.|.||.+++|.++++.+|...|+|.++.|+.+.. .....-.|||.|.+...+..|. .|.++.|-+..+.|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv 83 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIV 83 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEE
Confidence 4789999999999999999999999999998876432 2234568999999999988776 57777776665443
No 186
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.42 E-value=0.046 Score=52.48 Aligned_cols=67 Identities=21% Similarity=0.194 Sum_probs=51.9
Q ss_pred cHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecC
Q 013047 43 TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 115 (450)
Q Consensus 43 te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~ 115 (450)
-++++++.+++||. |.+|.|+.++...-.-.-=.||+|+..++|.+|+-.||+..| .++.++..|-+
T Consensus 299 lede~keEceKyg~--V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF----GGr~v~A~Fyn 365 (378)
T KOG1996|consen 299 LEDETKEECEKYGK--VGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF----GGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHHhhcc--eeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee----cceeeeheecc
Confidence 36688899999999 999998877542111112489999999999999999999876 48888776553
No 187
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.98 E-value=0.088 Score=43.21 Aligned_cols=80 Identities=9% Similarity=0.047 Sum_probs=48.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEE-eCCC-----CCCCeeeEEEEEeCCHHHHHHHHHHhCCCCccc
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV-SDIQ-----HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 102 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~-~d~~-----~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~ 102 (450)
..+.|.|=++|.. ....|.++|++||+ |.+..-+ ++.. ..-.......|+|.+..+|++||. .|+..+
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~--Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~-- 78 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGT--ILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIF-- 78 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS---EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEE--
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcce--EEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEE--
Confidence 4567888899887 67789999999998 8877511 0000 001123589999999999999996 477654
Q ss_pred CCCCceEEEeecC
Q 013047 103 GHPERTVKVAFAE 115 (450)
Q Consensus 103 g~~gr~i~v~~a~ 115 (450)
+ ..--+-|.+++
T Consensus 79 ~-g~~mvGV~~~~ 90 (100)
T PF05172_consen 79 S-GSLMVGVKPCD 90 (100)
T ss_dssp T-TCEEEEEEE-H
T ss_pred c-CcEEEEEEEcH
Confidence 1 12344466553
No 188
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.92 E-value=0.02 Score=59.77 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=57.3
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhcc-CceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGY-GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~-G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v 202 (450)
...++.|+|.||-.-+|.-+|++++.+- |.|+.. +.| +-+-.|||.|.+.++|.+.+.+|||..+...+-++
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 4456899999999999999999999955 445544 333 24567999999999999999999999987655443
No 189
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.90 E-value=0.55 Score=45.43 Aligned_cols=159 Identities=13% Similarity=0.205 Sum_probs=97.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCC------CCCCCeeeEEEEEeCCHHHHHHH----HHHhCCCC
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDI------QHEGLSRGFAFVMFSCHVDAMAA----YKRLQKPD 99 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~------~~tg~skG~aFVeF~~~edA~~A----l~~l~~~~ 99 (450)
++.|.+.||..+++-..+...|.+||+ |++|.|+.+. .+.-...-.+.+-|-+.+.+... +++|+...
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~p--IESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGP--IESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCc--eeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999 9999999865 11122334688999998887654 33333221
Q ss_pred cccCCCCceEEEeecCC--CCC---CCc----------------cccCCccEEEEcCCCCCchhHH-HH---HhhhccC-
Q 013047 100 VVFGHPERTVKVAFAEP--LRE---PDP----------------EIMAHVKTVFLDGVPPHWKENQ-IR---DQIKGYG- 153 (450)
Q Consensus 100 ~~~g~~gr~i~v~~a~~--~~~---~~~----------------~~~~~~~~lfV~nLp~~~te~d-L~---~~F~~~G- 153 (450)
-.+ +...|++.+..- .++ ..+ .....++.|.|.-- ..+++++ |. .|+..-+
T Consensus 93 ~~L--~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n 169 (309)
T PF10567_consen 93 TKL--KSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNN 169 (309)
T ss_pred Hhc--CCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCC
Confidence 111 345566655431 000 000 01223455666422 3332332 22 2333323
Q ss_pred ---ceEEEEEEecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCC
Q 013047 154 ---DVIRIVLARNMST--AKRKDYGFIDFSTHEAAVACINAINNK 193 (450)
Q Consensus 154 ---~v~~v~i~~d~~~--g~~rG~afV~F~s~e~A~~Ai~~l~g~ 193 (450)
.|+.|.|+...+. .-.+.||+++|-+..-|.+.++-|.-.
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 3677887764332 235789999999999999998876643
No 190
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=94.74 E-value=0.26 Score=48.45 Aligned_cols=9 Identities=0% Similarity=-0.326 Sum_probs=3.6
Q ss_pred CCCCCcHHH
Q 013047 38 ICNTWTKEA 46 (450)
Q Consensus 38 Lp~~~te~d 46 (450)
.|.++|+-.
T Consensus 157 ~p~Nin~~~ 165 (465)
T KOG3973|consen 157 QPGNINEWK 165 (465)
T ss_pred CCCCchHHH
Confidence 334444433
No 191
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.61 E-value=0.051 Score=59.46 Aligned_cols=81 Identities=19% Similarity=0.330 Sum_probs=67.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.+..++.|+|++|...+....|...|..||. |..|.+-... -||+|.+++...|++|++.|-+.. ++..
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGp--ir~Idy~hgq-------~yayi~yes~~~aq~a~~~~rgap--~G~P 519 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGP--IRIIDYRHGQ-------PYAYIQYESPPAAQAATHDMRGAP--LGGP 519 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCc--ceeeecccCC-------cceeeecccCccchhhHHHHhcCc--CCCC
Confidence 4566889999999999999999999999999 8888776432 499999999999999999887754 4555
Q ss_pred CceEEEeecCCC
Q 013047 106 ERTVKVAFAEPL 117 (450)
Q Consensus 106 gr~i~v~~a~~~ 117 (450)
.+.|+|.++.+-
T Consensus 520 ~~r~rvdla~~~ 531 (975)
T KOG0112|consen 520 PRRLRVDLASPP 531 (975)
T ss_pred CcccccccccCC
Confidence 678999988643
No 192
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.17 E-value=0.17 Score=51.51 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=59.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcc
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVV 101 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~ 101 (450)
++.|.|-.+|..+|-.||..|...+-. .|.+|+|++|.. .++=.++|+|.+.++|....+.+|++.|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~-~I~~irivRd~~---pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIK-QISDIRIVRDGM---PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhh-hhheeEEeecCC---CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 789999999999999999999998754 599999999854 23346999999999999999999999873
No 193
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.96 E-value=0.04 Score=59.82 Aligned_cols=75 Identities=27% Similarity=0.328 Sum_probs=63.3
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEE
Q 013047 32 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKV 111 (450)
Q Consensus 32 ~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v 111 (450)
+.++.|..-+.|-..|.-+|.+||. |.+++.+++- ..|.|+|.+.|.|..|+.+|+++++... +.+.+|
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~--v~s~wtlr~~-------N~alvs~~s~~sai~a~dAl~gkevs~~--g~Ps~V 368 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGS--VASAWTLRDL-------NMALVSFSSVESAILALDALQGKEVSVT--GAPSRV 368 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcc--hhhheecccc-------cchhhhhHHHHHHHHhhhhhcCCccccc--CCceeE
Confidence 4556666667888999999999999 9999998875 3799999999999999999999998665 567888
Q ss_pred eecCCC
Q 013047 112 AFAEPL 117 (450)
Q Consensus 112 ~~a~~~ 117 (450)
.+|+..
T Consensus 369 ~~ak~~ 374 (1007)
T KOG4574|consen 369 SFAKTL 374 (1007)
T ss_pred Eecccc
Confidence 877643
No 194
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.92 E-value=0.59 Score=39.06 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=51.6
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccC-ceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecC
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G-~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g 197 (450)
..+-+...|..++.++|..+.+.+- .|..++|+++.. ..+-.++++|.+.++|.+-.+.+||+.+.-
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444555666777788877777664 477888888743 356679999999999999999999999864
No 195
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.91 E-value=0.19 Score=43.89 Aligned_cols=69 Identities=28% Similarity=0.361 Sum_probs=48.5
Q ss_pred CCeEEEcCCC-----CCCcH----HHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCc
Q 013047 30 NDTLFVGNIC-----NTWTK----EAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 100 (450)
Q Consensus 30 ~~~lyV~nLp-----~~~te----~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~ 100 (450)
.-||.|.=+. .+... ++|.+.|++||+ |.=|+++-+ .-.|+|.+-+.|.+|++ +++.++
T Consensus 27 DaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~Ge--vvLvRfv~~---------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 27 DATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGE--VVLVRFVGD---------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp T-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS---ECEEEEETT---------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCc--eEEEEEeCC---------eEEEEECccHHHHHHHc-cCCcEE
Confidence 4566665444 12233 377888899998 887777754 47899999999999994 788887
Q ss_pred ccCCCCceEEEeec
Q 013047 101 VFGHPERTVKVAFA 114 (450)
Q Consensus 101 ~~g~~gr~i~v~~a 114 (450)
.++.|+|..-
T Consensus 95 ----~g~~l~i~LK 104 (146)
T PF08952_consen 95 ----NGRTLKIRLK 104 (146)
T ss_dssp ----TTEEEEEEE-
T ss_pred ----CCEEEEEEeC
Confidence 4888888744
No 196
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.90 E-value=0.11 Score=47.20 Aligned_cols=88 Identities=11% Similarity=0.044 Sum_probs=51.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhh-cCCCCe---eEEEEEeCCCCCC-CeeeEEEEEeCCHHHHHHHHHHhCCCCcc
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKD-YGVEGV---ENINLVSDIQHEG-LSRGFAFVMFSCHVDAMAAYKRLQKPDVV 101 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~-~G~~~V---~~i~l~~d~~~tg-~skG~aFVeF~~~edA~~Al~~l~~~~~~ 101 (450)
+....+|.|++||+++|++++.+.++. ++. . ..+.-........ ..-.-|+|.|.+.+++...+..+++..|.
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~--~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPD--EWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SS--E---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhccc--ccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 345679999999999999999997776 554 3 2222112211111 11234999999999999999999998775
Q ss_pred cCCCC-ceEEEeecCC
Q 013047 102 FGHPE-RTVKVAFAEP 116 (450)
Q Consensus 102 ~g~~g-r~i~v~~a~~ 116 (450)
..... ....|.+|.-
T Consensus 82 D~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 82 DSKGNEYPAVVEFAPY 97 (176)
T ss_dssp -TTS-EEEEEEEE-SS
T ss_pred CCCCCCcceeEEEcch
Confidence 43211 2445667654
No 197
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.90 E-value=0.14 Score=53.20 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=53.5
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhc--cCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CCeecCCeeEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKG--YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN--NKEFSDGNSKV 202 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~--~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~--g~~~~g~~i~v 202 (450)
+-+.|.|..|+..+-+++|+.+|+. +-+++.|.+..+. -=||+|++.++|+.|.+.|. -++|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4456788999999999999999975 5678888887652 24899999999999986554 23455555444
Q ss_pred EEE
Q 013047 203 KLR 205 (450)
Q Consensus 203 ~v~ 205 (450)
.|+
T Consensus 247 RIK 249 (684)
T KOG2591|consen 247 RIK 249 (684)
T ss_pred hhh
Confidence 443
No 198
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.88 E-value=0.037 Score=54.31 Aligned_cols=113 Identities=12% Similarity=0.190 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHH---HHHhhcCCCCeeEEEEEeCCCC---CCCeeeEEEEEeCCHHHHHHHHHHhCCCCcc
Q 013047 28 EDNDTLFVGNICNTWTKEAIK---QKLKDYGVEGVENINLVSDIQH---EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVV 101 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~---~~F~~~G~~~V~~i~l~~d~~~---tg~skG~aFVeF~~~edA~~Al~~l~~~~~~ 101 (450)
+..+-+||-+|+..+..+++. ++|.+||. |..|.+..+... .+-+ -.++|+|+..|||..||...++...
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygk--i~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~- 150 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGK--INKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVD- 150 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCccccccccc--ceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHh-
Confidence 445778999998876655554 67888888 999998887520 1111 1389999999999999999888654
Q ss_pred cCCCCceEEEeecCCCCCCC---ccccCCccEEEEcCCCC---CchhHHHHH
Q 013047 102 FGHPERTVKVAFAEPLREPD---PEIMAHVKTVFLDGVPP---HWKENQIRD 147 (450)
Q Consensus 102 ~g~~gr~i~v~~a~~~~~~~---~~~~~~~~~lfV~nLp~---~~te~dL~~ 147 (450)
+++.|++.+...+-... ...-....++|+..+-. .++.+|++.
T Consensus 151 ---dg~~lka~~gttkycs~~l~~~~c~~~~cmylhe~~~~~Ds~~k~e~~~ 199 (327)
T KOG2068|consen 151 ---DGRALKASLGTTKYCSFYLRNDICQNPDCMYLHEIGDQEDSFTKDEMKS 199 (327)
T ss_pred ---hhhhhHHhhCCCcchhHHhhhhcccCccccccccccccccccchHHHHH
Confidence 47777776665443321 11222334566654433 244444443
No 199
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.77 E-value=0.25 Score=38.92 Aligned_cols=55 Identities=16% Similarity=0.463 Sum_probs=41.2
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 192 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g 192 (450)
+..+|. +|.++...||.++|+.||.|. |..+.| .-|||.....+.|..|+..++-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 455666 999999999999999999765 555554 2699999999999999887753
No 200
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.31 E-value=0.01 Score=62.77 Aligned_cols=62 Identities=29% Similarity=0.383 Sum_probs=53.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCc
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 100 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~ 100 (450)
.....+|||+||...+.++-++.++..||. |.+++.+. |+|++|..+.-+..|+..|+...+
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~--v~s~kr~~----------fgf~~f~~~~~~~ra~r~~t~~~~ 98 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGF--VPSWKRDK----------FGFCEFLKHIGDLRASRLLTELNI 98 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCc--chhhhhhh----------hcccchhhHHHHHHHHHHhcccCC
Confidence 345789999999999999999999999998 87776653 899999999999999987776554
No 201
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.23 E-value=0.027 Score=55.23 Aligned_cols=76 Identities=18% Similarity=0.326 Sum_probs=56.5
Q ss_pred ccEEEEcCCCCCchh-HHHH--HhhhccCceEEEEEEecCC--C-CCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeE
Q 013047 128 VKTVFLDGVPPHWKE-NQIR--DQIKGYGDVIRIVLARNMS--T-AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201 (450)
Q Consensus 128 ~~~lfV~nLp~~~te-~dL~--~~F~~~G~v~~v~i~~d~~--~-g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~ 201 (450)
.+.+||-+|+..+.. ..|+ +.|.+||.|..|.+..+.. . -....-++|+|+..++|..||...+|..++++.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 356788888877544 4443 5789999999998887652 1 11123489999999999999999999999888644
Q ss_pred EE
Q 013047 202 VK 203 (450)
Q Consensus 202 v~ 203 (450)
+.
T Consensus 157 a~ 158 (327)
T KOG2068|consen 157 AS 158 (327)
T ss_pred Hh
Confidence 43
No 202
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.12 E-value=0.13 Score=41.05 Aligned_cols=69 Identities=22% Similarity=0.273 Sum_probs=43.6
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeec--CCCCCC--CccccCCccEEEEcCCCCCchhHHHHHhh
Q 013047 78 AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA--EPLREP--DPEIMAHVKTVFLDGVPPHWKENQIRDQI 149 (450)
Q Consensus 78 aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a--~~~~~~--~~~~~~~~~~lfV~nLp~~~te~dL~~~F 149 (450)
|+|+|.+..-|+..++. ....+.++ ...+.|... ....-. +-......++|-|.|||...++++|++.+
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~--~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLE--DCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEEC--CEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999999999863 33344443 344444322 111111 11123345789999999999999999753
No 203
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.07 E-value=0.29 Score=42.36 Aligned_cols=69 Identities=10% Similarity=0.228 Sum_probs=50.8
Q ss_pred cEEEEc----CCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 129 KTVFLD----GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 129 ~~lfV~----nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
.+|.|. |+....+-+.|...++.||.|..|.+.- +..|.|.|++..+|-+|+.+++. ...|..+.|.+
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 456564 4444444556667788999999998743 45699999999999999999886 45677677766
Q ss_pred E
Q 013047 205 R 205 (450)
Q Consensus 205 ~ 205 (450)
.
T Consensus 159 q 159 (166)
T PF15023_consen 159 Q 159 (166)
T ss_pred c
Confidence 3
No 204
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.88 E-value=1 Score=49.34 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=43.0
Q ss_pred CCCchhHHHHHhhhccCceE-----EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 137 PPHWKENQIRDQIKGYGDVI-----RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 137 p~~~te~dL~~~F~~~G~v~-----~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
...++..+|..++..-+.|. .|.|.. .|.||+... +.|...++.|++..+.++.+.|++.
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLL 560 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcCh-hhHHHHHHHhccccccCCceEEEEC
Confidence 34577888887777655443 455643 378999864 4577889999999999998666553
No 205
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.05 E-value=0.33 Score=44.18 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=46.5
Q ss_pred ccEEEEcCCCCCchhHHHHHhhhc-cCce---EEEEEEecCC-CC-CcceEEEEEeCCHHHHHHHHHHhCCCeecC
Q 013047 128 VKTVFLDGVPPHWKENQIRDQIKG-YGDV---IRIVLARNMS-TA-KRKDYGFIDFSTHEAAVACINAINNKEFSD 197 (450)
Q Consensus 128 ~~~lfV~nLp~~~te~dL~~~F~~-~G~v---~~v~i~~d~~-~g-~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g 197 (450)
..+|.|.+||+..||+++.+.++. ++.. ..+.-..... .. ..-.-|+|.|.+.+++...++.++|+.|.+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 458999999999999999997776 5554 3333122211 11 123569999999999999999999988754
No 206
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=91.77 E-value=0.16 Score=51.19 Aligned_cols=71 Identities=11% Similarity=0.207 Sum_probs=52.6
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe-ecCCeeEEEEE
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE-FSDGNSKVKLR 205 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~-~~g~~i~v~v~ 205 (450)
.+++|+||.+.++..+|+.+|...-.-..-.++. ..+++||...+...|.+|++.++++. +.|+.+.+...
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 4689999999999999999997542111111111 36899999999999999999999864 56666555443
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.85 E-value=0.85 Score=34.41 Aligned_cols=52 Identities=15% Similarity=0.283 Sum_probs=40.8
Q ss_pred CchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCe
Q 013047 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 199 (450)
Q Consensus 139 ~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~ 199 (450)
.++-++|+..+.+|.- ..|..+ ..|| ||.|.+.++|++|....+++.+-.-.
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d-----~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~ 62 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDD-----RTGF-YIVFNDSKEAERCFRAEDGTLFFTYR 62 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEec-----CCEE-EEEECChHHHHHHHHhcCCCEEEEEE
Confidence 4778899999999972 344444 3455 89999999999999999998876543
No 208
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.47 E-value=0.18 Score=51.51 Aligned_cols=81 Identities=20% Similarity=0.233 Sum_probs=62.7
Q ss_pred cCCCCCCCeEEEcCCCCCC-cHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCccc
Q 013047 24 TAPSEDNDTLFVGNICNTW-TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 102 (450)
Q Consensus 24 ~~~~~~~~~lyV~nLp~~~-te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~ 102 (450)
-....+.+.|-|.-+|+.+ |-++|..+|.+||+ |.+|.+-... =-|.|+|.+..+|-.|.+ .+...|
T Consensus 366 g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~--i~n~qv~~~~-------~~a~vTF~t~aeag~a~~-s~~avl-- 433 (526)
T KOG2135|consen 366 GHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGE--IENIQVDYSS-------LHAVVTFKTRAEAGEAYA-SHGAVL-- 433 (526)
T ss_pred cchhcccchhhhhccCCCCchHhhhhhhhhhcCc--cccccccCch-------hhheeeeeccccccchhc-ccccee--
Confidence 3445667888888888875 56799999999999 9999886642 259999999999966653 355544
Q ss_pred CCCCceEEEeecCCCC
Q 013047 103 GHPERTVKVAFAEPLR 118 (450)
Q Consensus 103 g~~gr~i~v~~a~~~~ 118 (450)
+++.|+|.|.++..
T Consensus 434 --nnr~iKl~whnps~ 447 (526)
T KOG2135|consen 434 --NNRFIKLFWHNPSP 447 (526)
T ss_pred --cCceeEEEEecCCc
Confidence 58999999987644
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.36 E-value=1.1 Score=34.51 Aligned_cols=68 Identities=21% Similarity=0.304 Sum_probs=40.0
Q ss_pred eEEEcCC--CCCCcHHHHHHHHhhcCC---CCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 32 TLFVGNI--CNTWTKEAIKQKLKDYGV---EGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 32 ~lyV~nL--p~~~te~dL~~~F~~~G~---~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
+||| |+ -..++..+|..++..... ..|-+|.|..+ |+||+-... .|+.++++|++..+ .+
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~---------~S~vev~~~-~a~~v~~~l~~~~~----~g 66 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN---------FSFVEVPEE-VAEKVLEALNGKKI----KG 66 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS----------EEEEE-TT--HHHHHHHHTT--S----SS
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee---------EEEEEECHH-HHHHHHHHhcCCCC----CC
Confidence 4555 33 245889999999987633 35667888753 799998755 88899999999888 58
Q ss_pred ceEEEeec
Q 013047 107 RTVKVAFA 114 (450)
Q Consensus 107 r~i~v~~a 114 (450)
++|+|+.|
T Consensus 67 k~v~ve~A 74 (74)
T PF03880_consen 67 KKVRVERA 74 (74)
T ss_dssp ----EEE-
T ss_pred eeEEEEEC
Confidence 99988764
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.82 E-value=1.4 Score=33.24 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=39.0
Q ss_pred CCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCc
Q 013047 41 TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 100 (450)
Q Consensus 41 ~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~ 100 (450)
.++-++|+..|.+|.- .+|+.|. | | -||.|.+.++|++|....+++.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-----~~I~~d~--t----G-fYIvF~~~~Ea~rC~~~~~~~~~ 58 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-----DRIRDDR--T----G-FYIVFNDSKEAERCFRAEDGTLF 58 (66)
T ss_pred CccHHHHHHHHhcCCc-----ceEEecC--C----E-EEEEECChHHHHHHHHhcCCCEE
Confidence 4788999999999985 3444554 3 4 58999999999999999998876
No 211
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=89.78 E-value=0.25 Score=44.30 Aligned_cols=64 Identities=14% Similarity=0.095 Sum_probs=47.2
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013047 25 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 94 (450)
Q Consensus 25 ~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~ 94 (450)
......+++|.+ +.+...++|.++-+ |. +.+|.+.......-.++|-.||+|.+.++|.++++.
T Consensus 106 ~~~~~~r~v~~K--~td~ql~~l~qw~~--~k--~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 106 KEGIKERTVYKK--ITDDQLDDLNQWAS--GK--GHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHHHHHhhhhcc--CCHHHHHHHHHHhc--cc--ceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 334457788888 55556666766666 66 888888875432237899999999999999998764
No 212
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.78 E-value=0.57 Score=42.92 Aligned_cols=60 Identities=10% Similarity=0.117 Sum_probs=44.4
Q ss_pred chhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CCeecCCeeEEEEE
Q 013047 140 WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN--NKEFSDGNSKVKLR 205 (450)
Q Consensus 140 ~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~--g~~~~g~~i~v~v~ 205 (450)
...+.|+++|.+++.+..+.++.. -+-..|.|.+.++|.+|...|+ +..+.+..++|...
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hhHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 345889999999999888877654 3358999999999999999999 99999987666554
No 213
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=87.76 E-value=1.2 Score=40.75 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=43.5
Q ss_pred CcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhC--CCCcccCCCCceEEEeecCCC
Q 013047 42 WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ--KPDVVFGHPERTVKVAFAEPL 117 (450)
Q Consensus 42 ~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~--~~~~~~g~~gr~i~v~~a~~~ 117 (450)
..++.|+++|..++. +..+.+++.- +=..|.|.+.++|++|...|+ +..+ .+..|+|-++...
T Consensus 7 ~~~~~l~~l~~~~~~--~~~~~~L~sF-------rRi~v~f~~~~~A~~~r~~l~~~~~~~----~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 7 DNLAELEELFSTYDP--PVQFSPLKSF-------RRIRVVFESPESAQRARQLLHWDGTSF----NGKRLRVYFGQPT 71 (184)
T ss_dssp --HHHHHHHHHTT-S--S-EEEEETTT-------TEEEEE-SSTTHHHHHHHTST--TSEE----TTEE-EEE----S
T ss_pred hhHHHHHHHHHhcCC--ceEEEEcCCC-------CEEEEEeCCHHHHHHHHHHhccccccc----CCCceEEEEcccc
Confidence 457899999999998 8777777642 248899999999999999998 6666 4788999888543
No 214
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=87.24 E-value=0.38 Score=51.26 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=61.2
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
.....+|||+|+...+..+-++.++..+|-|..+..+. |+|++|..+..+..|+..|+-..+++..+.+.+
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 44567999999999999999999999999887776543 899999999999999999999889888765555
No 215
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=86.40 E-value=2.3 Score=32.67 Aligned_cols=58 Identities=17% Similarity=0.278 Sum_probs=35.3
Q ss_pred CCchhHHHHHhhhccCc-----eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 138 PHWKENQIRDQIKGYGD-----VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 138 ~~~te~dL~~~F~~~G~-----v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
..++..+|..++..... |-.|.|.. .|+||+-... .|+.++++|++..+.++.++|+.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 35788889888887643 45677744 3899998755 77889999999999999877764
No 216
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.29 E-value=2.6 Score=42.52 Aligned_cols=64 Identities=11% Similarity=0.182 Sum_probs=47.5
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCce-EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCC
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDV-IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v-~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~ 198 (450)
-.+.|-|-++|.....+||...|+.|+.- -.|.++.+ -.+|-.|++...|..||- |...+++-+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt-~kh~~lKiR 454 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALT-LKHDWLKIR 454 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhh-ccCceEEee
Confidence 44788999999999999999999999642 33444444 269999999999999984 444444333
No 217
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.69 E-value=4.4 Score=42.88 Aligned_cols=82 Identities=15% Similarity=0.218 Sum_probs=63.9
Q ss_pred cCCccEEEEcCCCCC-chhHHHHHhhhcc----CceEEEEEEecC----------CCCC---------------------
Q 013047 125 MAHVKTVFLDGVPPH-WKENQIRDQIKGY----GDVIRIVLARNM----------STAK--------------------- 168 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~-~te~dL~~~F~~~----G~v~~v~i~~d~----------~~g~--------------------- 168 (450)
...+++|-|-||.|. +..++|.-+|..| |.|..|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999996 7899999998866 689999886421 1111
Q ss_pred ----------------cceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 169 ----------------RKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 169 ----------------~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
.--||.|+|.+.+.|.+..+.++|.++......+.+..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 11389999999999999999999999988776666543
No 218
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.29 E-value=3.7 Score=40.00 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=43.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCc
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 100 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~ 100 (450)
..=|-|=++|+. .-.-|..+|++||+ |.+...-. +| .+-+|.|.+..+|++||.+ +++.|
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~--Vvkhv~~~----ng---NwMhirYssr~~A~KALsk-ng~ii 256 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGE--VVKHVTPS----NG---NWMHIRYSSRTHAQKALSK-NGTII 256 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCe--eeeeecCC----CC---ceEEEEecchhHHHHhhhh-cCeee
Confidence 345666677765 45678899999998 87654432 22 4899999999999999964 55533
No 219
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=84.66 E-value=0.82 Score=40.02 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=68.9
Q ss_pred CCcHHHHHHHHhh-cCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCC
Q 013047 41 TWTKEAIKQKLKD-YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 119 (450)
Q Consensus 41 ~~te~dL~~~F~~-~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~ 119 (450)
+.+-+.|.+.+.+ ++. ...+++..- ..++..++|.+.+|++++++. +. ..+ .+..+.++...+...
T Consensus 28 ~~~~~~l~~~l~~~W~~--~~~~~i~~l------~~~~fl~~F~~~~d~~~vl~~--~p-~~~--~~~~~~l~~W~~~~~ 94 (153)
T PF14111_consen 28 PISLSALEQELAKIWKL--KGGVKIRDL------GDNLFLFQFESEEDRQRVLKG--GP-WNF--NGHFLILQRWSPDFN 94 (153)
T ss_pred CCCHHHHHHHHHHHhCC--CCcEEEEEe------CCCeEEEEEEeccceeEEEec--cc-ccc--cccchhhhhhccccc
Confidence 4567777777766 344 334444432 126899999999999999862 22 222 245566655544332
Q ss_pred CCc-cccCCccEEEEcCCCCC-chhHHHHHhhhccCceEEEEEEe
Q 013047 120 PDP-EIMAHVKTVFLDGVPPH-WKENQIRDQIKGYGDVIRIVLAR 162 (450)
Q Consensus 120 ~~~-~~~~~~~~lfV~nLp~~-~te~dL~~~F~~~G~v~~v~i~~ 162 (450)
... ......-=|.|-|||.. .+++-|+++.+.+|++..++...
T Consensus 95 ~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 95 PSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred ccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 211 11112234667899987 78899999999999988887643
No 220
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.17 E-value=4.5 Score=41.52 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=58.5
Q ss_pred ccEEEEcCCCCCchhHHHHHhhhccC-ceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecC
Q 013047 128 VKTVFLDGVPPHWKENQIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197 (450)
Q Consensus 128 ~~~lfV~nLp~~~te~dL~~~F~~~G-~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g 197 (450)
...|.|=.+|..++-.||..|...+- .|..++|++|.. ..+=.++|+|.+.++|....+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999999998774 478899999643 345568999999999999999999999864
No 221
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.04 E-value=2.9 Score=42.15 Aligned_cols=56 Identities=20% Similarity=0.218 Sum_probs=48.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 94 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~ 94 (450)
...|=|-++|.....+||...|+.|+. .--+|+||-|. .||..|++..-|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDdt--------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDDT--------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeecc--------eeEEeecchHHHHHHhhc
Confidence 568889999999999999999999985 45677787764 599999999999999863
No 222
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=82.91 E-value=0.79 Score=50.23 Aligned_cols=59 Identities=22% Similarity=0.369 Sum_probs=48.4
Q ss_pred EcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecC
Q 013047 133 LDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197 (450)
Q Consensus 133 V~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g 197 (450)
+.|..-..+-.-|..+|.+||.|+....+.+ -..|.|+|.+.+.|..|+++|+|+++--
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~ 361 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSV 361 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccc
Confidence 3444455667778999999999998877765 3479999999999999999999999753
No 223
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=82.57 E-value=4.8 Score=31.90 Aligned_cols=57 Identities=26% Similarity=0.291 Sum_probs=43.0
Q ss_pred EEcCCCCCCcHHHHHHHHhh-cCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 013047 34 FVGNICNTWTKEAIKQKLKD-YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 95 (450)
Q Consensus 34 yV~nLp~~~te~dL~~~F~~-~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l 95 (450)
|+=-+...+|+.+|++.+++ |+. .|.+|..+.-+. +.- =|||++...++|.++..++
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~V-kV~~VnT~~~~~--~~K--KA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDV-KVEKVNTLITPK--GEK--KAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCC-ceEEEEeEEcCC--CcE--EEEEEeCCCCcHHHHHHhh
Confidence 33346889999999999999 565 688888777542 222 3999999999998876543
No 224
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=81.76 E-value=5.7 Score=30.95 Aligned_cols=57 Identities=23% Similarity=0.213 Sum_probs=42.6
Q ss_pred EEEcCCCCCCcHHHHHHHHhh-cCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013047 33 LFVGNICNTWTKEAIKQKLKD-YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 94 (450)
Q Consensus 33 lyV~nLp~~~te~dL~~~F~~-~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~ 94 (450)
-|+=.++..+|+.+|++.+++ |+. .|.+|..+.-+. +.- =|||++...++|.++-.+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~V-kV~~Vnt~~~~~--~~K--KA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDV-KVEKVNTLITPR--GEK--KAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCC-ceEEEEeEEcCC--Cce--EEEEEECCCCcHHHHHHh
Confidence 344457889999999999998 565 688887776542 222 399999998888887554
No 225
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=80.75 E-value=3.3 Score=39.81 Aligned_cols=147 Identities=14% Similarity=0.246 Sum_probs=81.9
Q ss_pred CCcHHHHHHHHhhc-CCCCeeEEEEEeCCCCCCCeeeEEEEEeCC----HHHHHHHHHHhCCCCcccCCCCceEEEeecC
Q 013047 41 TWTKEAIKQKLKDY-GVEGVENINLVSDIQHEGLSRGFAFVMFSC----HVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 115 (450)
Q Consensus 41 ~~te~dL~~~F~~~-G~~~V~~i~l~~d~~~tg~skG~aFVeF~~----~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~ 115 (450)
+++.=+|++-+... -+....+|+|... ..-||.|+- ..-.++.++.|++..+.+......|+|.-++
T Consensus 48 sisnwdlmerlk~aid~~q~dsckires--------nid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~e 119 (445)
T KOG2891|consen 48 SISNWDLMERLKGAIDNHQFDSCKIRES--------NIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAE 119 (445)
T ss_pred ccchHHHHHHHHhhcccccccceeeccc--------ccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHh
Confidence 45555677666542 0001233444432 367888864 4446677777888776554444455554433
Q ss_pred CCCCC-----------------CccccCCccEEEEcCCCCC------------chhHHHHHhhhccCceEEEEEEe-c--
Q 013047 116 PLREP-----------------DPEIMAHVKTVFLDGVPPH------------WKENQIRDQIKGYGDVIRIVLAR-N-- 163 (450)
Q Consensus 116 ~~~~~-----------------~~~~~~~~~~lfV~nLp~~------------~te~dL~~~F~~~G~v~~v~i~~-d-- 163 (450)
.+..- .........+|++.+||-. .+++-|+..|+.||+|..|.|+. |
T Consensus 120 akidfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdpl 199 (445)
T KOG2891|consen 120 AKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPL 199 (445)
T ss_pred hcCCCCcccchHHHHhhhhhhhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchh
Confidence 22110 1112234468888887643 35788999999999999888753 1
Q ss_pred --CCCCCcc-----eEE---------EEEeCCHHHHHHHHHHhCCCee
Q 013047 164 --MSTAKRK-----DYG---------FIDFSTHEAAVACINAINNKEF 195 (450)
Q Consensus 164 --~~~g~~r-----G~a---------fV~F~s~e~A~~Ai~~l~g~~~ 195 (450)
.-+++.. +|+ +|+|-....-..|+.+|.|..+
T Consensus 200 r~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 200 REEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 1234433 332 3444444444556666666554
No 226
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.66 E-value=8.9 Score=40.65 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=56.4
Q ss_pred CCCCCeEEEcCCCCC-CcHHHHHHHHhhcCC--CCeeEEEEEeCCC---------CCCC---------------------
Q 013047 27 SEDNDTLFVGNICNT-WTKEAIKQKLKDYGV--EGVENINLVSDIQ---------HEGL--------------------- 73 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~-~te~dL~~~F~~~G~--~~V~~i~l~~d~~---------~tg~--------------------- 73 (450)
...+++|-|-||.|+ +..+||.-+|+.|=+ +.|.+|.|....- -+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 445789999999996 789999999998833 3499999863210 0111
Q ss_pred ---------------ee-eEEEEEeCCHHHHHHHHHHhCCCCc
Q 013047 74 ---------------SR-GFAFVMFSCHVDAMAAYKRLQKPDV 100 (450)
Q Consensus 74 ---------------sk-G~aFVeF~~~edA~~Al~~l~~~~~ 100 (450)
-+ =||.|+|.+.+.|.++.+.+++.++
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~Ef 293 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEF 293 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCccee
Confidence 11 2799999999999999999999876
No 227
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=73.75 E-value=5.9 Score=39.38 Aligned_cols=57 Identities=21% Similarity=0.238 Sum_probs=40.4
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhc
Q 013047 78 AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 151 (450)
Q Consensus 78 aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~ 151 (450)
|||+|++.++|+.|++.+.... ...++++.|. ..+-|...||.....+..++.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~------~~~~~v~~AP-----------eP~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR------PNSWRVSPAP-----------EPDDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC------CCCceEeeCC-----------CcccccccccCCChHHHHHHHHHHH
Confidence 7999999999999998655543 3455666553 2345778888777777777765543
No 228
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=72.93 E-value=5.5 Score=38.83 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=46.0
Q ss_pred EEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCe
Q 013047 130 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 199 (450)
Q Consensus 130 ~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~ 199 (450)
=|.|-+++... -.-|..+|++||+|++.... ..-.+..|.|.+.-+|.+||. -||+.|++..
T Consensus 199 WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 199 WVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred eEEEeccCccc-hhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 34455565442 34577899999998877553 234689999999999999995 6888888763
No 229
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=70.07 E-value=7 Score=32.97 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=26.8
Q ss_pred eEEEcCCCCC---------CcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCH
Q 013047 32 TLFVGNICNT---------WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH 85 (450)
Q Consensus 32 ~lyV~nLp~~---------~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~ 85 (450)
++.|-|++.. ++-++|++.|+.|.. + +|+.+.++ .-+.|++.|+|.+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p--~-kv~~l~~~---~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNP--L-KVKPLYGK---QGHTGFAIVEFNKD 66 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH-----S-EEEEEEET---TEEEEEEEEE--SS
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCC--c-eeEECcCC---CCCcEEEEEEECCC
Confidence 4566677543 356789999999986 4 46666653 35679999999763
No 230
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=63.42 E-value=6.7 Score=35.41 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=37.4
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHH
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST-AKRKDYGFIDFSTHEAAVACINA 189 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~-g~~rG~afV~F~s~e~A~~Ai~~ 189 (450)
.+++.. +.+..-++|.++.+ |.+..|..-..... ...+|-.||+|.+.+.|.++++.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 455555 44445555666655 67777765443211 25678999999999999988764
No 231
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=62.81 E-value=24 Score=30.95 Aligned_cols=55 Identities=27% Similarity=0.341 Sum_probs=39.5
Q ss_pred EcCCCCCCcHHHHHHHHhh-cCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013047 35 VGNICNTWTKEAIKQKLKD-YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 94 (450)
Q Consensus 35 V~nLp~~~te~dL~~~F~~-~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~ 94 (450)
|=-+...+|+.+|++.+++ |+. .|..|..+.-+. +.- =|||.+....+|.++...
T Consensus 86 vF~Vd~kAnK~qIK~AVEklf~V-kV~kVNTli~p~--g~K--KA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 86 VFIVDQRANKTQIKKAVEKLYDV-KVVKVNTLITPD--GLK--KAYIRLSPDVDALDVANK 141 (145)
T ss_pred EEEEcCCCCHHHHHHHHHHHhCC-eeEEEEeEEcCC--Cce--EEEEEECCCCcHHHHHHh
Confidence 3346788999999999998 564 688887766542 222 399999888887765443
No 232
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=62.64 E-value=18 Score=35.08 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=40.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCH-------HHHHHHHHHhC
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH-------VDAMAAYKRLQ 96 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~-------edA~~Al~~l~ 96 (450)
.+-|+|+||+.++.-.||+..+.+.+- ...+|.+. -..|-||+.|.+. .+..+++++++
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~-~pm~iswk-------g~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKREC-TPMSISWK-------GHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCC-CceeEeee-------cCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 467999999999999999999999874 12233332 2347799999653 34455555443
No 233
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=57.98 E-value=19 Score=34.98 Aligned_cols=56 Identities=7% Similarity=0.174 Sum_probs=39.5
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceE-EEEEEecCCCCCcceEEEEEeCCH-------HHHHHHHHHh
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVI-RIVLARNMSTAKRKDYGFIDFSTH-------EAAVACINAI 190 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~-~v~i~~d~~~g~~rG~afV~F~s~-------e~A~~Ai~~l 190 (450)
.-|+|+||+.++.-.||+..+.+-+.+- .+... -..+-||+.|-+. .++.+++..+
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~~~~~~~~~~~~~~~s~ 394 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRKGVPSTQDDMDKVLKSL 394 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCccCCCCCchHHHHHhccC
Confidence 4599999999999999999999887542 33331 2466799999653 4445555443
No 234
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=55.97 E-value=1.3e+02 Score=25.85 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=36.7
Q ss_pred CcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCC
Q 013047 42 WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 98 (450)
Q Consensus 42 ~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~ 98 (450)
.+-+.|.+++++-|. .+++|..-.+ ...|.|.+.++-.+|.+.|+..
T Consensus 50 ~~~~~v~~~L~~~gI-~~ksi~~~~~---------~~~irf~~~~~Ql~Ak~vL~~~ 96 (127)
T PRK10629 50 PDGFYVYQHLDANGI-HIKSITPEND---------SLLIRFDSPEQSAAAKEVLDRT 96 (127)
T ss_pred chHHHHHHHHHHCCC-CcceEEeeCC---------EEEEEECCHHHHHHHHHHHHHH
Confidence 678899999999986 5667666543 5889999999988887776654
No 235
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=53.59 E-value=5.1 Score=40.56 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=50.7
Q ss_pred CCCeEEEcCCCCCCcHH--------HHHHHHhh--cCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHH
Q 013047 29 DNDTLFVGNICNTWTKE--------AIKQKLKD--YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK 93 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~--------dL~~~F~~--~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~ 93 (450)
..+.+|+.++....+.+ +|.++|.. ++. +..|.+.++.. ...++|..|++|...+.|++++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~--~~~i~~rrd~~-nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAP--PSQIRNRRDWL-NKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCC--hhhccchhhhh-hccccCcccccccChHHHHHHhc
Confidence 35678888887765544 99999999 566 88888888865 67788999999999999999874
No 236
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=49.68 E-value=33 Score=25.48 Aligned_cols=19 Identities=16% Similarity=0.379 Sum_probs=15.7
Q ss_pred hHHHHHhhhccCceEEEEE
Q 013047 142 ENQIRDQIKGYGDVIRIVL 160 (450)
Q Consensus 142 e~dL~~~F~~~G~v~~v~i 160 (450)
-++|+++|+..|.|.-+-|
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 4689999999999876654
No 237
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=49.67 E-value=14 Score=33.47 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=44.2
Q ss_pred EEEEcCCCCCc-----hhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCe
Q 013047 130 TVFLDGVPPHW-----KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 199 (450)
Q Consensus 130 ~lfV~nLp~~~-----te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~ 199 (450)
++.+.++...+ .....+.+|.++.+.+...+++ +.++.-|.|.+++.|..|..+++...|.+++
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~ 80 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKN 80 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCc
Confidence 34444554432 2334456677776665555543 3456789999999999999999999999984
No 238
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=48.63 E-value=39 Score=28.48 Aligned_cols=45 Identities=4% Similarity=0.196 Sum_probs=25.9
Q ss_pred chhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHH-HHHHHH
Q 013047 140 WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE-AAVACI 187 (450)
Q Consensus 140 ~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e-~A~~Ai 187 (450)
++.++|++.|..|..++ |..+.+.. -..++++|+|...- -...|+
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHH
Confidence 35688999999998775 55556542 46899999997633 333444
No 239
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=48.14 E-value=95 Score=30.33 Aligned_cols=148 Identities=16% Similarity=0.168 Sum_probs=65.3
Q ss_pred CCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCC-----CCe--eeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEe
Q 013047 40 NTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-----GLS--RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVA 112 (450)
Q Consensus 40 ~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~t-----g~s--kG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~ 112 (450)
..+++++|.+.+... =|.++.|...+ ... ..-...-|-+.+||+++++.+....-.+...-+.+.|.
T Consensus 61 ~AL~~~~V~~kL~~V------PVF~itn~~G~p~l~~~~~~~~~~v~~~F~s~~dA~~~L~~lk~~~p~~~~~~kV~pvs 134 (274)
T PF04278_consen 61 LALPEEEVEEKLAGV------PVFTITNSQGEPVLVSGPDQGGKSVGLFFFSQQDAEAFLAQLKKSNPELASGAKVVPVS 134 (274)
T ss_dssp ----HHHHHHHHTTS------EEEEEE-TT--B-----TTS--SEEEEEES-HHHHHHHHHHHHH-SSHHHTT-EEEEEE
T ss_pred ccCCHHHHHHHhcCc------eEEEEECCCCCEEEeccCCCCCceEEEEEecHHHHHHHHHHHhhhCccccCceEEEEec
Confidence 456799999999853 13444443211 011 22344667799999999987766432111112222232
Q ss_pred ecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCce------EEEEEEec----CCCCCcceEEEEEeCCHHH
Q 013047 113 FAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDV------IRIVLARN----MSTAKRKDYGFIDFSTHEA 182 (450)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v------~~v~i~~d----~~~g~~rG~afV~F~s~e~ 182 (450)
...--+-. .+...+...|...=+|....-+.-++++.+-|.- +-|-+... -...+......--|-+.++
T Consensus 135 L~~vY~l~-~~~~~k~~~~~F~~vP~~~qV~~A~~ll~~~g~~~~~f~GVPvF~~~~~~~~Lti~~~~~~~iPlFF~ked 213 (274)
T PF04278_consen 135 LGKVYQLA-QENKKKPEGLQFRFVPDPKQVEAALELLKKQGQKVKQFQGVPVFYAEGGKGYLTIKQDNKRIIPLFFDKED 213 (274)
T ss_dssp HHHHHHHH-HHTTT-TT-EEEEEE--HHHHHHHHHHHHTTT---S---S-EEEEEESST-B-EETTTTEEEEEEESSHHH
T ss_pred HHHHHHHH-HHhhcCCcCceEEEcCCHHHHHHHHHHHHhcCCCcccCCCeEEEEEcCCCceEEEeeCCeEEEEEEecHHH
Confidence 21100000 0001133455555556655545555554433321 11222222 1111223356677889999
Q ss_pred HHHHHHHhCCCe
Q 013047 183 AVACINAINNKE 194 (450)
Q Consensus 183 A~~Ai~~l~g~~ 194 (450)
++.+++++....
T Consensus 214 L~~~l~k~~kq~ 225 (274)
T PF04278_consen 214 LQAALEKAKKQQ 225 (274)
T ss_dssp HHHHHHHHTTT-
T ss_pred HHHHHHHHHHhC
Confidence 999999886554
No 240
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=47.32 E-value=1e+02 Score=22.04 Aligned_cols=54 Identities=9% Similarity=0.133 Sum_probs=40.7
Q ss_pred EEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCH----HHHHHHHHH
Q 013047 130 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH----EAAVACINA 189 (450)
Q Consensus 130 ~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~----e~A~~Ai~~ 189 (450)
++.|.||.=.-....|++.+.+.-.|..+.+-.. .+.+-|+|... ++..++|++
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 4678888888889999999999988888888553 35678888754 566666654
No 241
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=46.74 E-value=1.1e+02 Score=22.33 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=31.6
Q ss_pred cHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013047 43 TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 94 (450)
Q Consensus 43 te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~ 94 (450)
.-.+|.++|.+.|. +|.++.+... .. ++..-|.+.+.+.|.+++++
T Consensus 14 ~La~v~~~l~~~~i-nI~~i~~~~~----~~-~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 14 RLAAVTEILSEAGI-NIRALSIADT----SE-FGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred hHHHHHHHHHHCCC-CEEEEEEEec----CC-CCEEEEEECCHHHHHHHHHH
Confidence 46788899999886 7888876553 12 36666667776677777654
No 242
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=45.59 E-value=44 Score=25.27 Aligned_cols=62 Identities=27% Similarity=0.284 Sum_probs=41.3
Q ss_pred HHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecC
Q 013047 45 EAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 115 (450)
Q Consensus 45 ~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~ 115 (450)
++|.+-|...|- .|.+|.-+.... ++...-.-||+++...+..++++ =+.+ -+..|+|+...
T Consensus 2 ~~I~~~L~~~G~-~v~~i~~~~~~~-~k~pl~mf~veL~p~~~~k~i~~---Ik~l----~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGH-PVRNIHNMHSRN-TKKPLNMFFVELEPKPNNKEIYK---IKTL----CGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCC-ceEEEEccccCC-CCCCceEEEEeeccCccccceee---hHhh----CCeEEEEecCC
Confidence 678888998885 588888777653 55666789999987766444432 2222 14566776554
No 243
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=44.22 E-value=99 Score=21.54 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=32.3
Q ss_pred cHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHH
Q 013047 43 TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92 (450)
Q Consensus 43 te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al 92 (450)
.-.+|.+.|.+.+. +|..+.+... ...++..-+++++.+.|.+++
T Consensus 11 ~l~~i~~~l~~~~i-nI~~~~~~~~----~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 11 RLAEVTEILAEAGI-NIKAISIAET----RGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred hHHHHHHHHHHcCC-CEeeEEEEEc----cCCcEEEEEEECCHHHHHHHh
Confidence 34567788888886 6878776653 234577888889888887775
No 244
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=43.81 E-value=24 Score=35.69 Aligned_cols=76 Identities=12% Similarity=0.066 Sum_probs=53.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEe-CCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS-DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~-d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
....|.|.+||...|+++|.+.+..|-. .|....+.. +......-.+.|+|.|...++.+.....+++..++.. .+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~-~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~-Kg 82 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPE-HVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDN-KG 82 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCcc-ccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecC-CC
Confidence 3568999999999999999999888643 344334432 1110112346799999999999999999998866443 44
No 245
>PRK11901 hypothetical protein; Reviewed
Probab=43.27 E-value=47 Score=33.07 Aligned_cols=61 Identities=8% Similarity=0.173 Sum_probs=40.6
Q ss_pred EEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEE--EEeCCHHHHHHHHHHhCCC
Q 013047 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAF--VMFSCHVDAMAAYKRLQKP 98 (450)
Q Consensus 33 lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aF--VeF~~~edA~~Al~~l~~~ 98 (450)
-|.-.|--..+++.|..|..+++ +..+++..... .|+.- |.. =+|.+.++|+.|++.|...
T Consensus 245 ~YTLQL~Aas~~~~L~~f~~~~~---L~~~~VYqT~R-nGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 245 HYTLQLSSASRSDTLNAYAKKQN---LSHYHVYETKR-DGKPW-YVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CeEEEeecCCCHHHHHHHHHHcC---cCceEEEEEEE-CCceE-EEEEecCcCCHHHHHHHHHhCCHH
Confidence 34444555567899999999987 55566665433 23221 332 2589999999999988764
No 246
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=42.67 E-value=1e+02 Score=26.66 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=47.7
Q ss_pred eEEEcCCC----CCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEE-eCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 32 TLFVGNIC----NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM-FSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 32 ~lyV~nLp----~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVe-F~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
.+++++|- ..+..++|+++|++.| ..+|+-... + |..+++ =.+.++.+..|+..=...+ |- .
T Consensus 5 iaLLRGINVGG~nki~MaeLr~~l~~~G---f~~V~Tyi~---S----GNvvf~~~~~~~~l~~~ie~~l~~~f--G~-~ 71 (137)
T PF08002_consen 5 IALLRGINVGGKNKIKMAELREALEDLG---FTNVRTYIQ---S----GNVVFESDRDPAELAAKIEKALEERF--GF-D 71 (137)
T ss_dssp EEEESS-SBTTBS---HHHHHHHHHHCT----EEEEEETT---T----TEEEEEESS-HHHHHHHHHHHHHHH---TT--
T ss_pred EEEEcceecCCCCcccHHHHHHHHHHcC---CCCceEEEe---e----CCEEEecCCChHHHHHHHHHHHHHhc--CC-C
Confidence 46777773 3488999999999999 677765543 3 445555 1223333333332111111 11 1
Q ss_pred ceEEEeecCCC---CCCCccc---cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEE
Q 013047 107 RTVKVAFAEPL---REPDPEI---MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVL 160 (450)
Q Consensus 107 r~i~v~~a~~~---~~~~~~~---~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i 160 (450)
..+-|.-...- ....+-. ....++++|.=|....+.+.+.++-..-...+.+.+
T Consensus 72 v~v~vrs~~el~~i~~~nPf~~~~~~~~~~~~v~fl~~~~~~~~~~~l~~~~~~~E~~~~ 131 (137)
T PF08002_consen 72 VPVIVRSAEELRAIIAANPFPWEAEADPKRLYVTFLSGPPDAEALEELAAYDTGPERFRV 131 (137)
T ss_dssp --EEEEEHHHHHHHHTT--GGGGS----SEEEEEEE-TT--HHHHHHHHTS---SEEEEE
T ss_pred eEEEEeeHHHHHHHHHHCCCcccccCCcceEEEEEeCCCCCHHHHHHHhccCCCCcEEEE
Confidence 12222211000 0001111 124466777667777777767666555444455544
No 247
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=42.43 E-value=9.3 Score=30.56 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=27.2
Q ss_pred CcccccCCCCCCCeEEEcCCCCCCcHHHHHHHHh
Q 013047 19 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLK 52 (450)
Q Consensus 19 ~k~~~~~~~~~~~~lyV~nLp~~~te~dL~~~F~ 52 (450)
..+..+......++|-|.|||..+.+++|++.++
T Consensus 41 ~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 41 LQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 3444555667789999999999999999988765
No 248
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=41.67 E-value=23 Score=33.49 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=29.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEE
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 62 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i 62 (450)
...+..+|||-|||..+|++.|.++.+++|. |+.+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~--vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGH--VQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhh--hhhe
Confidence 3455789999999999999999999999996 5544
No 249
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=41.60 E-value=27 Score=31.74 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=50.7
Q ss_pred CCeEEEcCCCCCC-----cHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCC
Q 013047 30 NDTLFVGNICNTW-----TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 104 (450)
Q Consensus 30 ~~~lyV~nLp~~~-----te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~ 104 (450)
.++|.+.+|+..+ .+....++|.++-+ ..-..+++ +.+..-|-|.+.+.|..|..+++...|.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~--~~~fq~lr-------sfrrvRi~f~~p~~a~~a~i~~~~~~f~--- 77 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINE--DATFQLLR-------SFRRVRINFSNPEAAADARIKLHSTSFN--- 77 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCc--chHHHHHH-------hhceeEEeccChhHHHHHHHHhhhcccC---
Confidence 4567788887653 23344566666654 44444444 3356779999999999999999999883
Q ss_pred CCc-eEEEeecCCC
Q 013047 105 PER-TVKVAFAEPL 117 (450)
Q Consensus 105 ~gr-~i~v~~a~~~ 117 (450)
++ .++.-++.+.
T Consensus 78 -~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 78 -GKNELKLYFAQPG 90 (193)
T ss_pred -CCceEEEEEccCC
Confidence 44 7777777654
No 250
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.07 E-value=1.4e+02 Score=21.68 Aligned_cols=51 Identities=24% Similarity=0.344 Sum_probs=34.1
Q ss_pred cHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 013047 43 TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 97 (450)
Q Consensus 43 te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~ 97 (450)
.-.+|.++|.+++. +|.++....... + ..+...|.++..++.+++++.|..
T Consensus 14 ~L~~l~~~l~~~~i-~i~~~~~~~~~~--~-~~~~~~i~v~~~~~~~~~~~~L~~ 64 (69)
T cd04909 14 VIAEVTQILGDAGI-SIKNIEILEIRE--G-IGGILRISFKTQEDRERAKEILKE 64 (69)
T ss_pred HHHHHHHHHHHcCC-CceeeEeEEeec--C-CcEEEEEEECCHHHHHHHHHHHHH
Confidence 56689999999986 677776554321 1 235567788766677777766644
No 251
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=39.16 E-value=1e+02 Score=29.63 Aligned_cols=10 Identities=10% Similarity=0.219 Sum_probs=4.7
Q ss_pred CCCccccccc
Q 013047 359 DDPYFYDDRA 368 (450)
Q Consensus 359 ~~~y~~~d~~ 368 (450)
.|.-.|++--
T Consensus 100 eDaLvTkNlv 109 (317)
T KOG1596|consen 100 EDALVTKNLV 109 (317)
T ss_pred hhheeecccC
Confidence 4445555443
No 252
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=38.99 E-value=1.2e+02 Score=33.31 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=40.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhc---CCCCeeEEEEEeCCCCCCCeeeE-EEEEeCCHHHHHHHHHHhCC
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDY---GVEGVENINLVSDIQHEGLSRGF-AFVMFSCHVDAMAAYKRLQK 97 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~---G~~~V~~i~l~~d~~~tg~skG~-aFVeF~~~edA~~Al~~l~~ 97 (450)
.++|.|.-||+.++.+.|.+...+. |. ++ |.=++|. |.. +. --|++....+++..+..|-.
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~k--i~-I~~i~D~--s~~--~v~i~i~l~~~~~~~~~~~~Lyk 284 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGK--IK-ISSINDY--TAE--NVEIEIKLPRGVYASEVIEALYA 284 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCC--Cc-cceeEeC--CCC--cEEEEEEECCCCCHHHHHHHHHH
Confidence 5789999999999999998876643 33 44 6666664 322 33 34566666667766665543
No 253
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=38.52 E-value=3.1e+02 Score=27.90 Aligned_cols=144 Identities=11% Similarity=0.095 Sum_probs=76.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceE
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 109 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i 109 (450)
...|+-++=|..++.+.|..+++..-. |..|++++-. | |.=+|+-+.=. ...++.|..... .--|
T Consensus 160 ~eVllSGGDPL~ls~~~L~~ll~~L~~--IpHv~iiRi~--T---R~pvv~P~RIt---~~L~~~l~~~~~-----~v~~ 224 (369)
T COG1509 160 REVLLSGGDPLSLSDKKLEWLLKRLRA--IPHVKIIRIG--T---RLPVVLPQRIT---DELCEILGKSRK-----PVWL 224 (369)
T ss_pred heEEecCCCccccCHHHHHHHHHHHhc--CCceeEEEee--c---ccceechhhcc---HHHHHHHhccCc-----eEEE
Confidence 456777888999999999999999877 8888888742 2 12222222211 222222332111 1112
Q ss_pred EEeecCCCCCCCc-----------cccCCccEEEEcCCCCCchh-HHHHHhhhccCceEEEEEEecCCCCCcceEEEEEe
Q 013047 110 KVAFAEPLREPDP-----------EIMAHVKTVFLDGVPPHWKE-NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 177 (450)
Q Consensus 110 ~v~~a~~~~~~~~-----------~~~~~~~~lfV~nLp~~~te-~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F 177 (450)
..++..+.+-..+ ...-.+.+|.+++++.+..- .+|...|...|..-......|... +...|
T Consensus 225 ~tH~NHp~Eit~e~~~A~~~L~~aGv~l~NQsVLLrGVND~~evl~~L~~~L~~~gV~PYYl~~~D~~~------G~~hf 298 (369)
T COG1509 225 VTHFNHPNEITPEAREACAKLRDAGVPLLNQSVLLRGVNDDPEVLKELSRALFDAGVKPYYLHQLDLVQ------GAAHF 298 (369)
T ss_pred EcccCChhhcCHHHHHHHHHHHHcCceeecchheecccCCCHHHHHHHHHHHHHcCCcceEEeccCccC------Cccce
Confidence 2222222221111 11223467889999887654 666666666675444444445332 22334
Q ss_pred -CCHHHHHHHHHHhCCCe
Q 013047 178 -STHEAAVACINAINNKE 194 (450)
Q Consensus 178 -~s~e~A~~Ai~~l~g~~ 194 (450)
.+.+.+.+.+++|-+..
T Consensus 299 r~~i~~~~~i~~~lr~~~ 316 (369)
T COG1509 299 RVPIAEGLQIVEELRGRT 316 (369)
T ss_pred eccHHHHHHHHHHHHHhC
Confidence 34556666666665543
No 254
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=37.99 E-value=33 Score=33.12 Aligned_cols=39 Identities=21% Similarity=0.630 Sum_probs=30.8
Q ss_pred CCCCCCCeEEEcCCCCCC------------cHHHHHHHHhhcCCCCeeEEEEE
Q 013047 25 APSEDNDTLFVGNICNTW------------TKEAIKQKLKDYGVEGVENINLV 65 (450)
Q Consensus 25 ~~~~~~~~lyV~nLp~~~------------te~dL~~~F~~~G~~~V~~i~l~ 65 (450)
.+-+-..||++.+||-.| +++-|+..|+.||. |.+|.|.
T Consensus 144 kpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~--ir~vdip 194 (445)
T KOG2891|consen 144 KPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGE--IRNVDIP 194 (445)
T ss_pred CCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhcc--ceecCCc
Confidence 344557899999999543 57889999999999 8887764
No 255
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=37.98 E-value=22 Score=34.98 Aligned_cols=65 Identities=17% Similarity=0.140 Sum_probs=36.3
Q ss_pred cCCCCCchhHHHHHhhhccCceEE-EEEEecCCCCCcceEEEEEeCCHHH------HHHHHHHhCCCeecCCe
Q 013047 134 DGVPPHWKENQIRDQIKGYGDVIR-IVLARNMSTAKRKDYGFIDFSTHEA------AVACINAINNKEFSDGN 199 (450)
Q Consensus 134 ~nLp~~~te~dL~~~F~~~G~v~~-v~i~~d~~~g~~rG~afV~F~s~e~------A~~Ai~~l~g~~~~g~~ 199 (450)
++.|-.++++||+.+..--.++.. ..++.+.-- +.-...|.+|.-..+ |+.+|..+.++...-++
T Consensus 241 ~r~pg~~~~~d~erl~~I~~ell~s~~i~pd~~~-~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~~Pl~N 312 (331)
T KOG2014|consen 241 GRDPGETSEEDLERLLQIRNELLESETIIPDELL-EFLSLIFTEFAPVCAVVGGILAQEVIKAISKKGPPLNN 312 (331)
T ss_pred CCCCccccHHHHHHHHHHHHhhccccccCCchHH-HHHHhcccccCchhhhhhhHhHHHHHHHhhcCCCcccc
Confidence 456667888888877654333322 444444321 234456677766543 46667666666554443
No 256
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=37.84 E-value=1.5e+02 Score=23.68 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=36.6
Q ss_pred HHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 013047 44 KEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 97 (450)
Q Consensus 44 e~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~ 97 (450)
.+.++++++++|- +|+++.+.. |..--...+|+.+.+.|.++.-.+..
T Consensus 22 ~~a~~~~~e~~Gg-~l~~~y~t~-----G~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 22 AEAVRALIEALGG-KLKSFYWTL-----GEYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHcCC-EEEEEEEec-----CCCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 5678889999884 688888875 44456899999999998887655543
No 257
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=37.51 E-value=78 Score=27.91 Aligned_cols=44 Identities=11% Similarity=0.121 Sum_probs=29.0
Q ss_pred HHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 013047 47 IKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 97 (450)
Q Consensus 47 L~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~ 97 (450)
|.+.++..+. .|.+|.+.. .++||.||+....+++..+++.+.+
T Consensus 25 L~~~~~~~~~-~i~~i~vp~------~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 25 LAMRAKKENL-PIYAILAPP------ELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred HHHHHHhCCC-cEEEEEccC------CCCcEEEEEEEChHHHHHHHhcCCC
Confidence 3333333443 256666554 2679999999988888888876544
No 258
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.31 E-value=1.6e+02 Score=21.42 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=27.9
Q ss_pred cHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeC--CHHHHHHHHH
Q 013047 43 TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS--CHVDAMAAYK 93 (450)
Q Consensus 43 te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~--~~edA~~Al~ 93 (450)
.-..|.++|.+++. +|.++..... ........+|.++ +.+++.++|+
T Consensus 14 ~l~~i~~~l~~~~i-nI~~i~~~~~---~~~~~~~v~i~v~~~~~~~~~~~L~ 62 (72)
T cd04883 14 QLADIAAIFKDRGV-NIVSVLVYPS---KEEDNKILVFRVQTMNPRPIIEDLR 62 (72)
T ss_pred HHHHHHHHHHHcCC-CEEEEEEecc---CCCCeEEEEEEEecCCHHHHHHHHH
Confidence 56678899999986 6777765443 2223344555555 4444455544
No 259
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.21 E-value=1.5e+02 Score=21.11 Aligned_cols=52 Identities=8% Similarity=0.057 Sum_probs=31.2
Q ss_pred CcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCC
Q 013047 42 WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 98 (450)
Q Consensus 42 ~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~ 98 (450)
-.-.+|.++|.+++. .|.++..... +........|+..+. +..++++++...
T Consensus 11 g~l~~i~~~l~~~~~-~I~~~~~~~~---~~~~~~~i~i~v~~~-~~~~~i~~l~~~ 62 (71)
T cd04903 11 GAIAKVTSVLADHEI-NIAFMRVSRK---EKGDQALMVIEVDQP-IDEEVIEEIKKI 62 (71)
T ss_pred ChHHHHHHHHHHcCc-CeeeeEEEec---cCCCeEEEEEEeCCC-CCHHHHHHHHcC
Confidence 356788899999985 6777765431 112223445666655 566666666553
No 260
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=37.10 E-value=4.9 Score=42.28 Aligned_cols=68 Identities=18% Similarity=0.048 Sum_probs=51.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCc
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 100 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~ 100 (450)
.++|||.||+++++-++|..+++.+-. +..+.|-.+.. ...+.-+..|+|+---+...|+.+||+..+
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~--~lrfals~~~a-ek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPG--FLRFALSTINA-EKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCch--heeeeccCchH-HHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 568999999999999999999998755 66665554432 445556788999877777777777777644
No 261
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=36.95 E-value=4.7 Score=42.40 Aligned_cols=72 Identities=13% Similarity=0.177 Sum_probs=55.3
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecC
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g 197 (450)
...++|||.|+.++.+-++|..++..+--+..+.+-..........+..|+|+---..+.|+.+||+..+..
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 455789999999999999999999988766666554443333445678999988888888888888877644
No 262
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.87 E-value=1.4e+02 Score=26.85 Aligned_cols=55 Identities=15% Similarity=0.081 Sum_probs=42.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 96 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~ 96 (450)
....++-| +|+..+.++-|.++-+-+|. |.+. -+. .-.+.|-+.++.++|++.+.
T Consensus 110 ~~~~~iRv-~l~~~i~~erl~ei~E~~gv--I~Ef---ee~--------~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 110 PGFETIRV-KLKKPIQEERLQEISEWHGV--IFEF---EED--------DKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred CCceeEEE-ecCccchHHHHHHHHHHhce--eEEe---cCC--------cEEEEeccHHHHHHHHHHHH
Confidence 34556777 78999999999999999997 6554 221 24688999999999998764
No 263
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=36.46 E-value=1.9e+02 Score=21.84 Aligned_cols=53 Identities=15% Similarity=0.066 Sum_probs=32.6
Q ss_pred CcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeC-CHHHHHHHHHHhCC
Q 013047 42 WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS-CHVDAMAAYKRLQK 97 (450)
Q Consensus 42 ~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~-~~edA~~Al~~l~~ 97 (450)
-.--+|.+.|+.++. +++.|.-...+ .....=.-||+|+ +.++.++|++.|+.
T Consensus 12 G~L~~vL~~f~~~~i-Nlt~IeSRP~~--~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 12 GALARALKLFEEFGV-NLTHIESRPSR--RNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred cHHHHHHHHHHHCCC-cEEEEECCCCC--CCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 346788899999984 45444443322 2222235678887 55566778877754
No 264
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=35.96 E-value=1.4e+02 Score=23.04 Aligned_cols=64 Identities=8% Similarity=0.004 Sum_probs=39.1
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhcCC--CCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 013047 32 TLFVGNICNTWTKEAIKQKLKDYGV--EGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 95 (450)
Q Consensus 32 ~lyV~nLp~~~te~dL~~~F~~~G~--~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l 95 (450)
-|...+||..+|.++|.+.-.+.-. .....|++++.-......|-||+.+=.|.|..+++.++-
T Consensus 2 ymver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~a 67 (77)
T PF14026_consen 2 YMVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRA 67 (77)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHc
Confidence 3567889998999998877765311 001234443321112233568888888888888877653
No 265
>PHA00019 IV phage assembly protein
Probab=35.72 E-value=3.6e+02 Score=28.06 Aligned_cols=150 Identities=13% Similarity=0.050 Sum_probs=75.5
Q ss_pred CCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEe-------CCHHHHHHHHHHhCCCCcccCCCCceEEEee
Q 013047 41 TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF-------SCHVDAMAAYKRLQKPDVVFGHPERTVKVAF 113 (450)
Q Consensus 41 ~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF-------~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~ 113 (450)
+....+|+++|.-++. +..+.++-++.-+ | -|+. ...++|..++-..++..+... +..+.|..
T Consensus 27 ~f~~~dI~~vl~~la~--~~g~NiVidp~V~----G--~vTl~~~~l~~v~~~qaLd~iL~~~gl~~~~~--g~v~~I~~ 96 (428)
T PHA00019 27 ELNNSPIREFVSWYSQ--QTGKSVVLGPDVK----G--NVTVYSADVNPANLPQFFDSVLRANGFDLVAG--GPAVVIKQ 96 (428)
T ss_pred EecCCCHHHHHHHHHH--hcCceEEECCCcc----e--EEEEecccccCCCHHHHHHHHHHhcCceEEEe--CCEEEEEe
Confidence 4456678888887777 7888888876423 2 3444 356677777777777665432 44555533
Q ss_pred cCCCCCCC--------------------cc--ccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcce
Q 013047 114 AEPLREPD--------------------PE--IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKD 171 (450)
Q Consensus 114 a~~~~~~~--------------------~~--~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG 171 (450)
....+... .+ .......+.+.....+.-++.|+.++...+. ....|..+..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~l~y~~a~~l~~~L~~~~~~~~~-~~~~v~~d~~t----- 170 (428)
T PHA00019 97 NPNQEDYADDLRDSRDDVFYDNSVPSGAPEVPNDLIVRTFNINNVRASDLLPLVKIFVKSNGA-PGGSVTDLPGT----- 170 (428)
T ss_pred chhhhhhhhhhhhhhhccccccccccccccccCCceEEEEEEEeCCHHHHHHHHHHhhcccCC-CCeEEEEeCCC-----
Confidence 21100000 00 0001123344433333334444444433210 11334444222
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 172 YGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 172 ~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
-.+|--.+++..+++.+.++.....-+.+.+++.+
T Consensus 171 N~Liv~~t~~~~~~i~~lI~~lD~~~~QV~Iea~I 205 (428)
T PHA00019 171 NSLVVSGSASQLPALADFISAIDVPRRQVLIEALI 205 (428)
T ss_pred CEEEEEeCHHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 24566677776666665555555566666666644
No 266
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=35.61 E-value=61 Score=33.14 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=25.5
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCCeecCCe
Q 013047 171 DYGFIDFSTHEAAVACINAINNKEFSDGN 199 (450)
Q Consensus 171 G~afV~F~s~e~A~~Ai~~l~g~~~~g~~ 199 (450)
-+|+|++++.+.++......+|.++....
T Consensus 259 YyAvvec~d~~tsK~iY~~CDG~Eye~sa 287 (622)
T COG5638 259 YYAVVECEDIETSKNIYSACDGVEYENSA 287 (622)
T ss_pred EEEEEEeccchhhHHHHhccCcccccccc
Confidence 37999999999999999999999987654
No 267
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=34.67 E-value=1.2e+02 Score=25.54 Aligned_cols=51 Identities=20% Similarity=0.133 Sum_probs=31.6
Q ss_pred CCCcHHHHHHHHhhcCC--CCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHH
Q 013047 40 NTWTKEAIKQKLKDYGV--EGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 91 (450)
Q Consensus 40 ~~~te~dL~~~F~~~G~--~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~A 91 (450)
.++.++||+|.+.+.-. ..+.-+.=++..-..|++.|||.| |.+.|.|.+.
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 36789999998887432 112222222333447889999976 6777666554
No 268
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=34.07 E-value=1.1e+02 Score=24.58 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=48.1
Q ss_pred ccccCCC-CCCCeEEEcCCCCCCcHHHHHHHHhh-cCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 013047 21 RCGTAPS-EDNDTLFVGNICNTWTKEAIKQKLKD-YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 97 (450)
Q Consensus 21 ~~~~~~~-~~~~~lyV~nLp~~~te~dL~~~F~~-~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~ 97 (450)
++..... ++.++||. +|-.+++-..|++.|+. -|. +..+.+++.|-..-..-+-=+=+.|++-++.+++.+.+-+
T Consensus 24 hinLkvv~qd~telfF-kiKktT~f~klm~af~~rqGK-~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG 100 (103)
T COG5227 24 HINLKVVDQDGTELFF-KIKKTTTFKKLMDAFSRRQGK-NMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGG 100 (103)
T ss_pred ccceEEecCCCCEEEE-EEeccchHHHHHHHHHHHhCc-CcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcC
Confidence 3444333 56777777 78899999999999987 454 5677777765221111111244678888888888776543
No 269
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=33.96 E-value=1.6e+02 Score=22.41 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=33.8
Q ss_pred cHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCC---HHHHHHHHHHhCC
Q 013047 43 TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC---HVDAMAAYKRLQK 97 (450)
Q Consensus 43 te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~---~edA~~Al~~l~~ 97 (450)
.-.+|.+.|++++. +|.+|...... .....=.-||+++. .++.+++++.|..
T Consensus 14 ~L~~il~~f~~~~i-ni~~i~s~p~~--~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 14 ALYDVLGVFAERGI-NLTKIESRPSK--GGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHHCCc-CEEEEEEEEcC--CCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 46788899999985 67777665543 22222246677773 5666777777665
No 270
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=33.89 E-value=87 Score=23.29 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=11.7
Q ss_pred HHHHHHHHhhcCC
Q 013047 44 KEAIKQKLKDYGV 56 (450)
Q Consensus 44 e~dL~~~F~~~G~ 56 (450)
.++|+++|+.+|.
T Consensus 8 ~~~iR~~fs~lG~ 20 (62)
T PF15513_consen 8 TAEIRQFFSQLGE 20 (62)
T ss_pred HHHHHHHHHhcCc
Confidence 4689999999998
No 271
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=33.11 E-value=2e+02 Score=21.42 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=34.5
Q ss_pred CcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCC---HHHHHHHHHHhCC
Q 013047 42 WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC---HVDAMAAYKRLQK 97 (450)
Q Consensus 42 ~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~---~edA~~Al~~l~~ 97 (450)
-.-.+|.+.|+++|. .|..|.-.... .....=.-||+++. ....+++++.|..
T Consensus 11 G~L~~vL~~f~~~~v-ni~~I~Srp~~--~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 11 GALAKALKVFAERGI-NLTKIESRPSR--KGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred CHHHHHHHHHHHCCC-CEEEEEeeecC--CCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 346789999999985 57666544432 22333467888874 5566777777654
No 272
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=32.91 E-value=78 Score=26.00 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=43.1
Q ss_pred hcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCCCCccc----cCCc
Q 013047 53 DYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI----MAHV 128 (450)
Q Consensus 53 ~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~~~~~~----~~~~ 128 (450)
+.|. |..|.....+ .|+|+.|+ ++..+.+...+..+++...+.-.+++... .-..
T Consensus 28 ~NGt--v~qI~~Y~~p-------NYvf~~FE------------nG~tvsv~~~gs~~kI~~~Dd~r~RDLgTHPcwnG~n 86 (121)
T PF06919_consen 28 KNGT--VAQIEQYMTP-------NYVFMRFE------------NGITVSVTYNGSIFKIGLDDDHRERDLGTHPCWNGVN 86 (121)
T ss_pred CCCc--EEEEeeecCC-------CEEEEEec------------CCCEEEEEecCcEEEEEecCchhhcccCCCcCccCcc
Confidence 4566 8888887766 49999999 44444333345666666555444332221 1122
Q ss_pred cE----EEEcC-CCCCchhHHHHHhhh
Q 013047 129 KT----VFLDG-VPPHWKENQIRDQIK 150 (450)
Q Consensus 129 ~~----lfV~n-Lp~~~te~dL~~~F~ 150 (450)
++ +||.- |...+++++++++|.
T Consensus 87 Rk~Lvk~~iRhiL~~~a~~e~~EAi~D 113 (121)
T PF06919_consen 87 RKLLVKTYIRHILGNKAKPEHLEAIFD 113 (121)
T ss_pred hhhHHHHHHHHHHhccCCHHHHHHHHH
Confidence 22 23322 345567777777764
No 273
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=32.27 E-value=3.5e+02 Score=27.16 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=21.8
Q ss_pred CcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeC
Q 013047 42 WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 83 (450)
Q Consensus 42 ~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~ 83 (450)
..+.-+.-++++||. ..+++|.+-- -..+|=+=|+|.
T Consensus 130 y~~~v~lP~l~~~G~--~~~l~v~rRG---~yP~GGGeV~~~ 166 (326)
T TIGR03399 130 YLRNVFLPLLERMGI--RAELELLRRG---FYPRGGGEVRLR 166 (326)
T ss_pred HHHHHHHHHHHhCCC--cEEEEEEeCC---cCCCCCEEEEEE
Confidence 334455567788998 6788888631 123344555554
No 274
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=32.01 E-value=51 Score=25.04 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=37.5
Q ss_pred HHHHHhhhccC-ceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCe
Q 013047 143 NQIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 199 (450)
Q Consensus 143 ~dL~~~F~~~G-~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~ 199 (450)
++|++.|++.| .|..|.-+....+..+-..-+|+.....+... .|+=+.|.+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~ 56 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQR 56 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCee
Confidence 46788888888 47777777777666677778888877655444 34445666655
No 275
>TIGR02515 IV_pilus_PilQ type IV pilus secretin (or competence protein) PilQ. A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure.
Probab=31.72 E-value=1.7e+02 Score=30.33 Aligned_cols=64 Identities=13% Similarity=0.050 Sum_probs=39.7
Q ss_pred cHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeC--CHHHHHHHHHHhCCCCcccCCCCceEEEeec
Q 013047 43 TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS--CHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 114 (450)
Q Consensus 43 te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~--~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a 114 (450)
.+.+|+++|+.+.. ...+.|+.++.-+ |-.-+.|. +.++|..+|...++..+.. .+..+.|..+
T Consensus 9 ~~~~l~dvL~~la~--~~g~NiVi~~~V~----g~Vtl~~~~v~~~~al~~Il~~~gl~~~~--~gnvi~V~~~ 74 (418)
T TIGR02515 9 QDIPVRTVLQVIAE--FTNLNIVVSDSVQ----GNITLRLKNVPWDQALDIILKSKGLDKRR--DGNIIYIAPL 74 (418)
T ss_pred eCCCHHHHHHHHHH--HhCCeEEECCCCc----ceEEEEEeCCCHHHHHHHHHHhCCCCEEE--ECCEEEEecH
Confidence 34456666666555 5556777764322 44555665 5678888888777765543 3667777644
No 276
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=31.56 E-value=5.6e+02 Score=25.91 Aligned_cols=127 Identities=8% Similarity=0.011 Sum_probs=61.0
Q ss_pred hhhHHHHHhhCCCcccCCcc-cccCCCCCCCeEEEcC-CCC-CCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEE
Q 013047 2 LQLFLIYILIFPLKQICGKR-CGTAPSEDNDTLFVGN-ICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78 (450)
Q Consensus 2 ~~~~~~~le~~~~~~~~~k~-~~~~~~~~~~~lyV~n-Lp~-~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~a 78 (450)
++.++..||+..-.+.+.+. +.+... ...-|-|.+ .+. .+++++|+.++++|+. ..-+.+++..
T Consensus 157 ~~~i~~ELe~~GIrlnk~~p~V~I~kk-~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I--~nA~V~Ir~d---------- 223 (365)
T COG1163 157 RDIIERELEDVGIRLNKRPPDVTIKKK-ESGGIRINGTGPLTHLDEDTVRAILREYRI--HNADVLIRED---------- 223 (365)
T ss_pred HHHHHHHHHhcCeEecCCCCceEEEEe-ccCCEEEecccccccCCHHHHHHHHHHhCc--ccceEEEecC----------
Confidence 35677777776433222111 122222 223344433 344 4899999999999995 3333334332
Q ss_pred EEEeCCHHHHHHHHHHhCCCCcccCCCCceEEE-eecC-CCCCCCccccCCccEEEEcCCCCCchhHH-HHHhhhccC
Q 013047 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKV-AFAE-PLREPDPEIMAHVKTVFLDGVPPHWKENQ-IRDQIKGYG 153 (450)
Q Consensus 79 FVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v-~~a~-~~~~~~~~~~~~~~~lfV~nLp~~~te~d-L~~~F~~~G 153 (450)
.+.+|..+||.. |...+ ..|.| ...+ ...+.........+.++|+... .+.-++ ++.+|...+
T Consensus 224 ----vTlDd~id~l~~-nrvY~------p~l~v~NKiD~~~~e~~~~l~~~~~~v~isa~~-~~nld~L~e~i~~~L~ 289 (365)
T COG1163 224 ----VTLDDLIDALEG-NRVYK------PALYVVNKIDLPGLEELERLARKPNSVPISAKK-GINLDELKERIWDVLG 289 (365)
T ss_pred ----CcHHHHHHHHhh-cceee------eeEEEEecccccCHHHHHHHHhccceEEEeccc-CCCHHHHHHHHHHhhC
Confidence 266777777753 22111 11221 1111 1111112223344677776554 444444 445666665
No 277
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=31.48 E-value=1.4e+02 Score=24.67 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHH
Q 013047 45 EAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK 93 (450)
Q Consensus 45 ~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~ 93 (450)
.+|.++++++| |.+-.|..|. -++.=||++|+.+.+...++|.
T Consensus 27 PE~~a~lk~ag---i~nYSIfLde---~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG---IRNYSIFLDE---EENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC---CceeEEEecC---CcccEEEEEEEcChHHHHHHHh
Confidence 36788899999 6776777663 2344699999996666555553
No 278
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=31.21 E-value=65 Score=31.21 Aligned_cols=50 Identities=12% Similarity=0.073 Sum_probs=35.1
Q ss_pred cccCCcccccCCCCC-CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEe
Q 013047 15 KQICGKRCGTAPSED-NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS 66 (450)
Q Consensus 15 ~~~~~k~~~~~~~~~-~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~ 66 (450)
.++.+.-+.+....- .....|+|||+++|-.-|..+++..-. +..+.+|.
T Consensus 79 ~vi~~DaLk~d~~~l~~~~~vVaNlPY~Isspii~kll~~~~~--~~~~v~M~ 129 (259)
T COG0030 79 TVINGDALKFDFPSLAQPYKVVANLPYNISSPILFKLLEEKFI--IQDMVLMV 129 (259)
T ss_pred EEEeCchhcCcchhhcCCCEEEEcCCCcccHHHHHHHHhccCc--cceEEEEe
Confidence 455666666655432 456789999999999999999988654 44555443
No 279
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=31.04 E-value=1.8e+02 Score=21.89 Aligned_cols=45 Identities=11% Similarity=0.190 Sum_probs=35.9
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCC
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 179 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s 179 (450)
.+|.|.++.=.-....+++.+.+...|..+.+-.. .+.++|+|++
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~------~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE------KGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc------cCeEEEEEcC
Confidence 46778888777778889999998888888888665 3458999988
No 280
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=30.31 E-value=2e+02 Score=20.29 Aligned_cols=61 Identities=7% Similarity=0.022 Sum_probs=35.0
Q ss_pred EEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCC
Q 013047 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 98 (450)
Q Consensus 33 lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~ 98 (450)
|.|..-...-.-.+|.+.|.+++. .|.++...... ........+++.+. ...+.+++|...
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~-nI~~~~~~~~~---~~~~~~~~~~v~~~-~~~~l~~~l~~~ 62 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGI-NIAAMQVGRKE---KGGIAYMVLDVDSP-VPEEVLEELKAL 62 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCC-CeeeEEEeccC---CCCEEEEEEEcCCC-CCHHHHHHHHcC
Confidence 334333344456789999999986 67777765431 11234455556554 444555555543
No 281
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=30.01 E-value=4.3e+02 Score=26.70 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=22.7
Q ss_pred CcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCC
Q 013047 42 WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC 84 (450)
Q Consensus 42 ~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~ 84 (450)
.-+.-+.-++++||. -.+++|.+-- -..+|=+-|+|..
T Consensus 132 y~~~v~lP~l~~~G~--~~~l~i~rRG---~yP~GGGeV~~~i 169 (343)
T PRK04204 132 YIRRVTLPLLRRMGI--EAEIELLRRG---FYPAGGGEVALEV 169 (343)
T ss_pred HHHHHHHHHHHHcCC--cEEEEEEeCC---ccCCCCeEEEEEE
Confidence 334555566788998 6778887641 1233446666653
No 282
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=29.72 E-value=2e+02 Score=21.72 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 013047 44 KEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 96 (450)
Q Consensus 44 e~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~ 96 (450)
-++|.+.+.++| +...+|.- +| .=++.|+.+.+.++|+++++++.
T Consensus 36 i~~~~~~~~~~G---a~~~~~sG----sG-~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAAEENG---ALGAKMSG----SG-GGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHTT---ESEEEEET----TS-SSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CCceecCC----CC-CCCeEEEEECCHHHHHHHHHHHH
Confidence 346777778888 44455532 20 12578888889999999888764
No 283
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=29.61 E-value=1.5e+02 Score=31.24 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=38.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhc-CCCCeeEEEEEeCCCCCCCeeeEEE-EEeCCHHHHHHHHHHhC
Q 013047 31 DTLFVGNICNTWTKEAIKQKLKDY-GVEGVENINLVSDIQHEGLSRGFAF-VMFSCHVDAMAAYKRLQ 96 (450)
Q Consensus 31 ~~lyV~nLp~~~te~dL~~~F~~~-G~~~V~~i~l~~d~~~tg~skG~aF-VeF~~~edA~~Al~~l~ 96 (450)
++|.|.-||..++.+++.+.+... ....+..|.=++|.. .. .|..| |++....+++..++.|-
T Consensus 226 ~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s--~~-~~vrivI~lk~~~~~~~~~~~L~ 290 (445)
T cd00187 226 NTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDES--DR-EGIRFVIELKRGAMAEVVLNGLY 290 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeecc--CC-CceEEEEEECCCccHHHHHHHHH
Confidence 689999999999999999887653 111133454455532 22 25555 45665556665555443
No 284
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=29.25 E-value=2.9e+02 Score=27.76 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=25.5
Q ss_pred EEEEcCCCCCchhHHHH---Hhhhc-cCceEEEEEEecCCCCCcceEEEEEe
Q 013047 130 TVFLDGVPPHWKENQIR---DQIKG-YGDVIRIVLARNMSTAKRKDYGFIDF 177 (450)
Q Consensus 130 ~lfV~nLp~~~te~dL~---~~F~~-~G~v~~v~i~~d~~~g~~rG~afV~F 177 (450)
..++.+||..+.+.++. +++.+ +. .+|.|..+...+.+.|++++-+
T Consensus 188 ~~~~~~l~~~va~r~~~~a~~~L~~~~~--~dv~i~~~~~~~~s~G~~i~L~ 237 (326)
T cd00874 188 ISHAANLPPHVAERQAEAAAALLRKALG--LQIEIEPEDQSALGPGSGIVLW 237 (326)
T ss_pred EEEEccCCHHHHHHHHHHHHHHHhhccC--CCeEEEEEecCCCCCCEEEEEE
Confidence 45678888887766554 44555 33 2334443333356666655443
No 285
>PRK10905 cell division protein DamX; Validated
Probab=29.00 E-value=1.1e+02 Score=30.47 Aligned_cols=60 Identities=10% Similarity=0.150 Sum_probs=39.4
Q ss_pred EEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEE--EEEeCCHHHHHHHHHHhCCC
Q 013047 34 FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA--FVMFSCHVDAMAAYKRLQKP 98 (450)
Q Consensus 34 yV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~a--FVeF~~~edA~~Al~~l~~~ 98 (450)
|+-.|---.+++.|.+|..+++ +....+..... .|+.. |. +=.|.+.++|++|++.|...
T Consensus 248 YTLQL~A~Ss~~~l~~fakKlg---L~~y~vy~TtR-nGkpW-YVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 248 YTLQLSSSSNYDNLNGWAKKEN---LKNYVVYETTR-NGQPW-YVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred eEEEEEecCCHHHHHHHHHHcC---CCceEEEEecc-CCceE-EEEEecCCCCHHHHHHHHHHCCHH
Confidence 4444555568899999999997 45555544322 23211 22 22589999999999988754
No 286
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=28.89 E-value=65 Score=29.35 Aligned_cols=9 Identities=11% Similarity=0.523 Sum_probs=3.9
Q ss_pred cCceEEEEE
Q 013047 152 YGDVIRIVL 160 (450)
Q Consensus 152 ~G~v~~v~i 160 (450)
||.|.++.+
T Consensus 98 fG~i~d~~f 106 (215)
T KOG3262|consen 98 FGPINDVHF 106 (215)
T ss_pred cccccccEE
Confidence 344444433
No 287
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=28.77 E-value=2.8e+02 Score=21.52 Aligned_cols=61 Identities=10% Similarity=0.161 Sum_probs=45.1
Q ss_pred cCCCCCCcHHHHHHHHhh-cCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEe
Q 013047 36 GNICNTWTKEAIKQKLKD-YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVA 112 (450)
Q Consensus 36 ~nLp~~~te~dL~~~F~~-~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~ 112 (450)
=.++.-+.-+||.+.... ||. -.++..+.+ .-.|-..+.+|..+||+.++.+.. .+.+++-
T Consensus 14 i~f~RPvkf~dl~~kv~~afGq--~mdl~ytn~---------eL~iPl~~Q~DLDkAie~ld~s~~-----~ksLRil 75 (79)
T cd06405 14 IQFPRPVKFKDLQQKVTTAFGQ--PMDLHYTNN---------ELLIPLKNQEDLDRAIELLDRSPH-----MKSLRIL 75 (79)
T ss_pred EecCCCccHHHHHHHHHHHhCC--eeeEEEecc---------cEEEeccCHHHHHHHHHHHccCcc-----ccceeEe
Confidence 356788888888877765 887 767766654 267899999999999998887543 4555543
No 288
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=28.20 E-value=72 Score=24.09 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=36.1
Q ss_pred HHHHHhhhccC-ceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCe
Q 013047 143 NQIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 199 (450)
Q Consensus 143 ~dL~~~F~~~G-~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~ 199 (450)
++|++.|...| .|..|.-+....+...-..-||+++...+.+++ ++=+.|.+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~ 56 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQR 56 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeE
Confidence 56777787777 467777777766667777889999877664443 3334555544
No 289
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=28.17 E-value=7e+02 Score=25.98 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=34.5
Q ss_pred cEEEEcCCCCCc-hhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCC-HHHHHHHHHHhCCCe
Q 013047 129 KTVFLDGVPPHW-KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST-HEAAVACINAINNKE 194 (450)
Q Consensus 129 ~~lfV~nLp~~~-te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s-~e~A~~Ai~~l~g~~ 194 (450)
.++.+++++.+. +..+|.+.+-+.|..-.-....|...| .-.|.+ .+.+.+.++.|.++.
T Consensus 251 QsVLLkGVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G------~~hFrv~~~~g~~I~~~lr~~~ 312 (417)
T TIGR03820 251 QSVLLAGVNDCPRIMKKLVHKLVANRVRPYYLYQCDLSEG------LSHFRTPVGKGIEIIESLIGHT 312 (417)
T ss_pred eceEECCcCCCHHHHHHHHHHHHHCCCeeceeeeccCCCC------cccccCcHHHHHHHHHHHHHhC
Confidence 467788887653 345555545556755555555554332 334544 556777777766653
No 290
>PRK10560 hofQ outer membrane porin HofQ; Provisional
Probab=28.11 E-value=4.4e+02 Score=26.96 Aligned_cols=64 Identities=14% Similarity=0.072 Sum_probs=41.3
Q ss_pred cHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeC--CHHHHHHHHHHhCCCCcccCCCCceEEEeec
Q 013047 43 TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS--CHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 114 (450)
Q Consensus 43 te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~--~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a 114 (450)
.+.+|+++|..++. +..+.++-|+.-+ |..=+.+. +.++|-.++-.+++..+.. .+..+.|...
T Consensus 3 ~~adI~~vl~~la~--~~g~NiVidp~V~----G~VTl~~~~V~~~qal~~iL~~~gl~~~~--~g~i~~I~p~ 68 (386)
T PRK10560 3 DDVPVAQVLQALAE--QEKLNLVVSPDVS----GTVSLHLTDVPWKQALQTVVKSAGLILRQ--EGNILSVHSQ 68 (386)
T ss_pred cCCCHHHHHHHHHH--hcCceEEECCCCc----ceEEEEEeCCCHHHHHHHHHHhCCCcEEE--eCCEEEEEch
Confidence 45577888887777 7888888876423 43444444 4667777777777765544 3666676544
No 291
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=28.04 E-value=7e+02 Score=25.94 Aligned_cols=14 Identities=14% Similarity=0.005 Sum_probs=5.9
Q ss_pred EEEeCCHHHHHHHH
Q 013047 79 FVMFSCHVDAMAAY 92 (450)
Q Consensus 79 FVeF~~~edA~~Al 92 (450)
++.|.+.+...+++
T Consensus 223 ~~~~~~~~~k~~~l 236 (456)
T PRK10590 223 HVHFVDKKRKRELL 236 (456)
T ss_pred EEEEcCHHHHHHHH
Confidence 34444444433333
No 292
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.41 E-value=3.8e+02 Score=29.20 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=65.4
Q ss_pred CcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCccc----CCCCceEEEeecCCC
Q 013047 42 WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF----GHPERTVKVAFAEPL 117 (450)
Q Consensus 42 ~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~----g~~gr~i~v~~a~~~ 117 (450)
.--++|.+.|..... |.+|.+.-- ||-++.+....-++..++.+....-.. -.++++|.|++..+.
T Consensus 58 eiA~~i~~~l~~~~~--~~~veiaGp--------gfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaN 127 (577)
T COG0018 58 EIAEEIAEKLDTDEI--IEKVEIAGP--------GFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSAN 127 (577)
T ss_pred HHHHHHHHhccccCc--EeEEEEcCC--------CEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCC
Confidence 345566666666554 778877632 566666665444444444444211111 114788999987543
Q ss_pred CCCCccccCCccEEEEcCCCCCchhHHHHHhhhccC-ceEEEEEEec
Q 013047 118 REPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYG-DVIRIVLARN 163 (450)
Q Consensus 118 ~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-~v~~v~i~~d 163 (450)
+++-++|+.|-..+--+.|..+++..| .|+....+.|
T Consensus 128 ---------ptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD 165 (577)
T COG0018 128 ---------PTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVND 165 (577)
T ss_pred ---------CCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECc
Confidence 456799999999999999999999888 3555544444
No 293
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.88 E-value=2.3e+02 Score=19.93 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=29.3
Q ss_pred cHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013047 43 TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 94 (450)
Q Consensus 43 te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~ 94 (450)
.-.+|.+.|.++|. +|.++...... ...+....|+.++.+++.+++++
T Consensus 12 ~L~~i~~~l~~~~~-nI~~i~~~~~~---~~~~~~v~~~ve~~~~~~~~L~~ 59 (65)
T cd04882 12 GLHEILQILSEEGI-NIEYMYAFVEK---KGGKALLIFRTEDIEKAIEVLQE 59 (65)
T ss_pred HHHHHHHHHHHCCC-ChhheEEEccC---CCCeEEEEEEeCCHHHHHHHHHH
Confidence 34577888989885 67777654431 12234455666776666666654
No 294
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=26.73 E-value=1.2e+02 Score=22.99 Aligned_cols=44 Identities=18% Similarity=0.124 Sum_probs=32.0
Q ss_pred HHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHH
Q 013047 45 EAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 90 (450)
Q Consensus 45 ~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~ 90 (450)
++|++-|+++|- .|..|.-|.... +......-||+.....+...
T Consensus 2 ~~I~~~L~~~G~-~v~~i~~m~~~~-~r~P~nmf~vel~~~~~~~~ 45 (69)
T smart00596 2 SQIEEALKDIGF-PVLFIHNMLNRD-TKNPQNMFEVELVPAANGKE 45 (69)
T ss_pred HHHHHHHHHcCC-ceeEEEcccccC-CCCcceeEEEEeeecCCCcc
Confidence 578889999986 688888877654 55666788898876544333
No 295
>PHA02531 20 portal vertex protein; Provisional
Probab=26.51 E-value=73 Score=33.53 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=29.4
Q ss_pred EEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcc
Q 013047 130 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRK 170 (450)
Q Consensus 130 ~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~r 170 (450)
-|=|+|||..-.++-|+++..+|- -+++.|.+||+-+
T Consensus 283 YiDVGNlPk~KAeqYlr~vm~~yk----NklvYDa~TGeir 319 (514)
T PHA02531 283 YIDVGNLPKRKAEEYLNNVMQRYK----NRVVYDANTGKVK 319 (514)
T ss_pred EEEcCCCChhhHHHHHHHHHHHhh----hhEEEeCCCCeec
Confidence 344899999999999999999986 5677777776644
No 296
>CHL00030 rpl23 ribosomal protein L23
Probab=26.22 E-value=2.1e+02 Score=23.15 Aligned_cols=49 Identities=20% Similarity=0.133 Sum_probs=33.0
Q ss_pred cccCCcccccCCCCCCCeEEEcCCCCCCcHHHHHHHHhh-cCCCCeeEEEEEeCC
Q 013047 15 KQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKD-YGVEGVENINLVSDI 68 (450)
Q Consensus 15 ~~~~~k~~~~~~~~~~~~lyV~nLp~~~te~dL~~~F~~-~G~~~V~~i~l~~d~ 68 (450)
+++.+|..... + .+ .|+=-++.++|+.+|++.++. |+. .|..|..+.-+
T Consensus 7 PivTEKs~~l~-e-~n--~y~F~V~~~anK~eIK~avE~lf~V-kV~~VNt~~~~ 56 (93)
T CHL00030 7 PVFTDKSIRLL-E-KN--QYTFDVDSGSTKTEIKHWIELFFGV-KVIAVNSHRLP 56 (93)
T ss_pred ceeCHHHHHhh-H-CC--EEEEEECCCCCHHHHHHHHHHHhCC-eEEEEEEEEcC
Confidence 34445555544 2 23 344457889999999999998 665 68888776653
No 297
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=25.87 E-value=1.6e+02 Score=31.41 Aligned_cols=51 Identities=12% Similarity=-0.007 Sum_probs=38.1
Q ss_pred HHHHHHHHh----hcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCC
Q 013047 44 KEAIKQKLK----DYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 98 (450)
Q Consensus 44 e~dL~~~F~----~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~ 98 (450)
--+|..+|. .+|. |++++|...+. -..+...++.|.+.++|..|+..+...
T Consensus 203 g~dl~~l~~Gs~GtlGI--It~atlkl~p~--p~~~~~~~~~f~~~~~a~~~~~~~~~~ 257 (499)
T PRK11230 203 GFDLLALFTGSEGMLGV--VTEVTVKLLPK--PPVARVLLASFDSVEKAGLAVGDIIAA 257 (499)
T ss_pred ccchHhhhccCCCccEE--EEEEEEEEEcC--CcceEEEEEECCCHHHHHHHHHHHHhc
Confidence 346777776 6888 99998887654 234457789999999999998876543
No 298
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=25.35 E-value=3.6e+02 Score=21.60 Aligned_cols=65 Identities=3% Similarity=0.000 Sum_probs=37.4
Q ss_pred CCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEEe
Q 013047 136 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 207 (450)
Q Consensus 136 Lp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~~ 207 (450)
+..+.-.++|++.|+- ..-..+.|.+..+.+ -+|.+.+.++...|++.+.. .-....+++.|.+.
T Consensus 25 ~~~~~L~~kI~~~f~l-~~~~~~~l~Y~Dedg-----d~V~l~~D~DL~~a~~~~~~-~~~~~~lrl~v~~~ 89 (91)
T cd06398 25 LNMDGLREKVEELFSL-SPDADLSLTYTDEDG-----DVVTLVDDNDLTDAIQYFCS-GSRLNPLRIDVTVD 89 (91)
T ss_pred CCHHHHHHHHHHHhCC-CCCCcEEEEEECCCC-----CEEEEccHHHHHHHHHHHhc-cCCCceEEEEEEEe
Confidence 3444446667777743 222344444432222 48999999999999986421 22334556666553
No 299
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=25.34 E-value=1.1e+02 Score=24.04 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=23.2
Q ss_pred eeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 013047 59 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 97 (450)
Q Consensus 59 V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~ 97 (450)
|.+|....+ .+||.|||=.+.+++..|+..+..
T Consensus 34 I~Si~~~~~------lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 34 IYSIFAPDS------LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp --EEEE-TT------STSEEEEEESSHHHHHHHHTT-TT
T ss_pred eEEEEEeCC------CceEEEEEeCCHHHHHHHHhcccc
Confidence 666655533 579999999999999999875543
No 300
>COG4907 Predicted membrane protein [Function unknown]
Probab=25.24 E-value=1.3e+02 Score=31.37 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=11.1
Q ss_pred hHHHHHhhhccCc-----eEEEEEEe
Q 013047 142 ENQIRDQIKGYGD-----VIRIVLAR 162 (450)
Q Consensus 142 e~dL~~~F~~~G~-----v~~v~i~~ 162 (450)
|+..+.+++.|.. .++|.|..
T Consensus 488 W~aFKnfLsd~s~lke~~pesI~~W~ 513 (595)
T COG4907 488 WQAFKNFLSDYSQLKEAKPESIHLWE 513 (595)
T ss_pred HHHHHHHHHhHHHHhhCCCcceehHh
Confidence 5556666665543 34555543
No 301
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=25.09 E-value=3.8e+02 Score=21.83 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 013047 44 KEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 97 (450)
Q Consensus 44 e~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~ 97 (450)
.+.|.+.+++-|. .+++|..-. +-..|.|++.++-.+|.+.|+.
T Consensus 48 ~~~v~~~L~~~~I-~~k~i~~~~---------~~llirf~~~~~Ql~Ak~~L~~ 91 (101)
T PF13721_consen 48 AFQVEQALKAAGI-AVKSIEQEG---------DSLLIRFDSTDQQLKAKDVLSK 91 (101)
T ss_pred HHHHHHHHHHCCC-CcceEEeeC---------CEEEEEECCHHHHHHHHHHHHH
Confidence 3699999999986 566666533 3578999999987777665554
No 302
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=24.32 E-value=1.2e+02 Score=29.87 Aligned_cols=60 Identities=12% Similarity=0.253 Sum_probs=47.2
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecC-------CCCCcceEEEEEeCCHHHHHHH
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM-------STAKRKDYGFIDFSTHEAAVAC 186 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~-------~~g~~rG~afV~F~s~e~A~~A 186 (450)
.++.|.+.||..+++-..+...|-+||.|+.|-++.+. +..+......+.|-+.+.+...
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdF 80 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDF 80 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHH
Confidence 45678889999899888899999999999999998765 1223446789999998876543
No 303
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=24.23 E-value=62 Score=21.20 Aligned_cols=16 Identities=38% Similarity=0.761 Sum_probs=14.6
Q ss_pred CCcHHHHHHHHhhcCC
Q 013047 41 TWTKEAIKQKLKDYGV 56 (450)
Q Consensus 41 ~~te~dL~~~F~~~G~ 56 (450)
++++++|++++..+|+
T Consensus 3 tWs~~~L~~wL~~~gi 18 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGI 18 (38)
T ss_pred CCCHHHHHHHHHHcCC
Confidence 5889999999999996
No 304
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=24.18 E-value=2e+02 Score=22.45 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=35.1
Q ss_pred EcCCCCCCcHHHHHHHHh---hc--CCCCeeEEEEEeCCCCCCCeee---EEEEEeCCHHHHHHHH
Q 013047 35 VGNICNTWTKEAIKQKLK---DY--GVEGVENINLVSDIQHEGLSRG---FAFVMFSCHVDAMAAY 92 (450)
Q Consensus 35 V~nLp~~~te~dL~~~F~---~~--G~~~V~~i~l~~d~~~tg~skG---~aFVeF~~~edA~~Al 92 (450)
+=.|..+++++++.++++ .+ ....|+++.+=++...+...+| ..+++|++.++-++-+
T Consensus 6 lfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~ 71 (97)
T PF07876_consen 6 LFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQ 71 (97)
T ss_dssp EEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHH
Confidence 335677888888755443 33 2234888887776543332234 3567889888866554
No 305
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=23.90 E-value=4.6e+02 Score=25.18 Aligned_cols=124 Identities=10% Similarity=0.139 Sum_probs=62.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCC-----------eeeEEEEEeCCHHHHH--HHHHH
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGL-----------SRGFAFVMFSCHVDAM--AAYKR 94 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~-----------skG~aFVeF~~~edA~--~Al~~ 94 (450)
-.++++|+ .|+.-++++-|.-|.+++| .+.|.+.....+.|+ -.-||.|.|+...+-+ .+|+.
T Consensus 156 h~nr~aY~-~lS~Rad~~lLe~fc~~~g---y~~vvf~qT~de~g~PiYHTNVmMaige~favic~~~i~~~~R~~vir~ 231 (318)
T COG4874 156 HPNRTAYA-GLSQRADRELLEVFCEQIG---YSRVVFFQTRDESGSPIYHTNVMMAIGEHFAVICDEAIPEYERRFVIRS 231 (318)
T ss_pred ccchhhhh-hhhcccCHHHHHHHHHHcC---CceeeeeeeccccCCcceehhHHHHhhhheeeeeccccccHHHHHHHHH
Confidence 34778888 6889999999998999988 444444421111221 1247777776544433 35555
Q ss_pred hCCCCcccCCCCceE-EEeecCC----CCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEe
Q 013047 95 LQKPDVVFGHPERTV-KVAFAEP----LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLAR 162 (450)
Q Consensus 95 l~~~~~~~g~~gr~i-~v~~a~~----~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~ 162 (450)
|... +++| .++...- -...+.......+.|-++.-..++-.+.-+.+.++++.|+-+.|..
T Consensus 232 L~~d-------gkeiv~is~~Q~~hF~GN~ieL~~~~n~~v~aMSa~Ay~~lTd~Q~niie~~~~ivp~~VpT 297 (318)
T COG4874 232 LAKD-------GKEIVSISIEQMNHFCGNIIELETADNQKVIAMSASAYEALTDTQLNIIETHGKIVPFAVPT 297 (318)
T ss_pred HHhC-------CCeEEEeeHHHHHHhhccceEeeccCCceEEEeehhHHHHhhHHHHHHHHhhCeeeeecccc
Confidence 5432 2332 2211000 0000000111223333433333433445566778888877666543
No 306
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=23.82 E-value=6.4e+02 Score=24.03 Aligned_cols=45 Identities=7% Similarity=0.161 Sum_probs=29.0
Q ss_pred CCeEEEcCCCCC--CcHHHHHHHHhhcCCCCe---eEEEEEeCCCCCCCeeeEEEEEeC
Q 013047 30 NDTLFVGNICNT--WTKEAIKQKLKDYGVEGV---ENINLVSDIQHEGLSRGFAFVMFS 83 (450)
Q Consensus 30 ~~~lyV~nLp~~--~te~dL~~~F~~~G~~~V---~~i~l~~d~~~tg~skG~aFVeF~ 83 (450)
...|.|--|..+ -|..+|+.+|+++|- .+ -+|.++.+. .+.|+|.
T Consensus 94 GvaiiVe~lTDN~nRt~~~ir~~f~K~gg-~l~~~gsv~~~Fe~--------kG~i~~~ 143 (238)
T TIGR01033 94 GVAIIVECLTDNKNRTASEVRSAFNKNGG-SLGEPGSVSYLFSR--------KGVIEVP 143 (238)
T ss_pred ceEEEEEEecCCHHhHHHHHHHHHHHcCC-eeCCCCceeeeeec--------ceEEEEC
Confidence 345666656544 478899999999874 23 246666654 3667774
No 307
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=23.78 E-value=29 Score=26.20 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=26.7
Q ss_pred HHHHHHHhhcCCCCeeEE-EEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 013047 45 EAIKQKLKDYGVEGVENI-NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 96 (450)
Q Consensus 45 ~dL~~~F~~~G~~~V~~i-~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~ 96 (450)
++|.+.|+.+.. ...+ +| .+|..|++.++|..++.++.
T Consensus 27 ~~v~~~~~~~~~--f~k~vkL------------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEK--FSKIVKL------------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHH--Hhhhhhh------------hhccCCCCHHHHHHHHHHhh
Confidence 688888877654 3322 22 38999999999988877653
No 308
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=23.57 E-value=2.1e+02 Score=30.11 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=41.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhc---CCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDY---GVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 97 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~---G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~ 97 (450)
+.++|.|.-||..++.++|.+.+.+. |. |+ |.=++|.. ...- ---|++....+++.+|..|-.
T Consensus 219 ~~~~ivItEIPy~~~t~~lie~I~~l~~~gk--i~-I~~i~D~s--~~~v-~i~I~Lk~~~~~~~vl~~Ly~ 284 (479)
T PRK09630 219 NDKTLLIKEICPSTTTETLIRSIENAAKRGI--IK-IDSIQDFS--TDLP-HIEIKLPKGIYAKDLLRPLFT 284 (479)
T ss_pred cCCEEEEEeCCCcccHHHHHHHHHHHHhcCC--Cc-cceeeccC--CCCc-eEEEEECCCCCHHHHHHHHHh
Confidence 35689999999999999998876653 43 43 55566642 2211 234667766677777765543
No 309
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=23.32 E-value=3.1e+02 Score=28.98 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=38.9
Q ss_pred CCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeec
Q 013047 40 NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 114 (450)
Q Consensus 40 ~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a 114 (450)
...++++|.++|++-.. -.+.+++.. +....|+-||.|. +..++..+ .+..|.|+..
T Consensus 49 ~a~~~Kei~~~l~~~n~--~~nlk~~~~---~td~~G~t~vr~~---------q~vnGvpv----~g~~v~vh~d 105 (507)
T COG3227 49 SAPNEKEILQFLENVNA--DNNLKAIST---DTDPNGFTHVRYQ---------QVVNGVPV----KGSEVIVHLD 105 (507)
T ss_pred ccCChHHHHHHHhcCCh--hhceeeEEe---eccCCCceEEEEE---------eeECCeec----cCceEEEEEC
Confidence 35788999999996554 455666553 2234689999987 34577777 4777777765
No 310
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=23.29 E-value=3.1e+02 Score=31.32 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=40.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhh---cCCCCeeEEEEEeCCCCCCCeeeE-EEEEeCCHHHHHHHHHHhC
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKD---YGVEGVENINLVSDIQHEGLSRGF-AFVMFSCHVDAMAAYKRLQ 96 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~---~G~~~V~~i~l~~d~~~tg~skG~-aFVeF~~~edA~~Al~~l~ 96 (450)
+.++|.|.-||..++.+.|.+-..+ -+. |+ |.-+.|. |. ++. --|++....+++..+..|-
T Consensus 240 ~~~~ivItEiPy~~~t~~lie~I~~~~~~~k--i~-I~di~D~--s~--~~vrivI~lk~~~~~~~~~~~Ly 304 (869)
T PRK12758 240 DKKTLVITEIPYGTTTSSLIDSILKANDKGK--IK-IKKVEDN--TA--ADVEILVHLAPGVSPDKTIDALY 304 (869)
T ss_pred CCCEEEEEecCCcccHHHHHHHHHHHHhcCC--Cc-eeeeEec--CC--CceEEEEEeCCCCCHHHHHHHHH
Confidence 4678999999999888888776654 244 55 6666663 32 233 3356666666666666553
No 311
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=22.97 E-value=2.8e+02 Score=19.60 Aligned_cols=54 Identities=11% Similarity=0.119 Sum_probs=39.3
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCH----HHHHHHHHH
Q 013047 32 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH----VDAMAAYKR 94 (450)
Q Consensus 32 ~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~----edA~~Al~~ 94 (450)
||.|.||.-.-....|++.+...-- |.++.+-... +-+-|+|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~G--V~~v~vd~~~-------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPG--VKSVKVDLET-------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTT--EEEEEEETTT-------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCC--CcEEEEECCC-------CEEEEEEecCCCCHHHHHHHHHH
Confidence 5788888888888999999999844 8888886542 4577888744 455555554
No 312
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=22.32 E-value=3.4e+02 Score=20.34 Aligned_cols=66 Identities=15% Similarity=0.107 Sum_probs=46.0
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCC
Q 013047 32 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 99 (450)
Q Consensus 32 ~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~ 99 (450)
+|.|......=.-.+|.+.+++.+. .|.++.+..... .+......-|+..+.++....+++|.+..
T Consensus 8 ~l~i~~~dr~GlL~dI~~~i~~~~~-nI~~i~~~~~~~-~~~~~~~l~v~V~d~~~L~~ii~~L~~i~ 73 (80)
T PF13291_consen 8 RLRIEAEDRPGLLADITSVISENGV-NIRSINARTNKD-DGTARITLTVEVKDLEHLNQIIRKLRQIP 73 (80)
T ss_dssp EEEEEEE--TTHHHHHHHHHHCSSS-EEEEEEEEE--E-TTEEEEEEEEEESSHHHHHHHHHHHCTST
T ss_pred EEEEEEEcCCCHHHHHHHHHHHCCC-CeEEEEeEEecc-CCEEEEEEEEEECCHHHHHHHHHHHHCCC
Confidence 3444444444556789999999876 788888887421 34556666677789999999999988753
No 313
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=22.07 E-value=12 Score=37.43 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=38.1
Q ss_pred hhhHHHHHhhCCCcc--cCCcccccCCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeC
Q 013047 2 LQLFLIYILIFPLKQ--ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD 67 (450)
Q Consensus 2 ~~~~~~~le~~~~~~--~~~k~~~~~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d 67 (450)
.+.|..||+.+.... ...--+.+.-.+...++-+.|++|.++.++|.+.| | +..|.|++|
T Consensus 39 ~~~l~~~l~~~~~~~~~p~~~~iavAGPV~~~~~~lTN~~W~i~~~~l~~~l---g---~~~v~liND 100 (316)
T PF02685_consen 39 EDALADYLAELDAGGPEPDSACIAVAGPVRDGKVRLTNLPWTIDADELAQRL---G---IPRVRLIND 100 (316)
T ss_dssp HHHHHHHHHHTCHHHTCEEEEEEEESS-EETTCEE-SSSCCEEEHHHCHCCC---T----TCEEEEEH
T ss_pred HHHHHHHHHhcccCCCccceEEEEEecCccCCEEEecCCCccccHHHHHHHh---C---CceEEEEcc
Confidence 356777888652211 11122344445567788999999999999999755 4 567889886
No 314
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=22.05 E-value=2.4e+02 Score=21.93 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=36.2
Q ss_pred EcCCCCCchhHHHHHhhhc-cC-ceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 013047 133 LDGVPPHWKENQIRDQIKG-YG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 189 (450)
Q Consensus 133 V~nLp~~~te~dL~~~F~~-~G-~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~ 189 (450)
+-.+...++..+|++.+++ |+ .|..|..+.-+ .+ .--|||++..-+.|.+...+
T Consensus 18 ~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~~--~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-RG--EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--ceEEEEEECCCCcHHHHHHh
Confidence 3345678888888888876 44 46666665543 22 23599999888887776544
No 315
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=22.04 E-value=98 Score=31.47 Aligned_cols=69 Identities=19% Similarity=0.300 Sum_probs=48.5
Q ss_pred ccEEEEcCCCCCchhHHHHHhhhccCc-eEEEEEEecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCCeec
Q 013047 128 VKTVFLDGVPPHWKENQIRDQIKGYGD-VIRIVLARNMST--AKRKDYGFIDFSTHEAAVACINAINNKEFS 196 (450)
Q Consensus 128 ~~~lfV~nLp~~~te~dL~~~F~~~G~-v~~v~i~~d~~~--g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~ 196 (450)
.++|.|..||...++++|.+....+-. |.+..+...... ....+.|+|.|...++...-...++|+.+-
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 457889999999999998888777532 444444321111 123567999999999988888888887764
No 316
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=21.95 E-value=34 Score=25.88 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=21.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhc
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDY 54 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~ 54 (450)
+..+++||||.||..|-++.=..+++.+
T Consensus 24 s~tSr~vflG~IP~~W~~~~~~~~~k~~ 51 (67)
T PF15407_consen 24 SLTSRRVFLGPIPEIWLQDHRKSWYKSL 51 (67)
T ss_pred HHcCceEEECCCChHHHHcCcchHHHHH
Confidence 4468999999999988777666655543
No 317
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=21.48 E-value=2.1e+02 Score=24.67 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=20.0
Q ss_pred CeeeEEEEEeCCHHHHHHHHHHhCC
Q 013047 73 LSRGFAFVMFSCHVDAMAAYKRLQK 97 (450)
Q Consensus 73 ~skG~aFVeF~~~edA~~Al~~l~~ 97 (450)
.++||.||++...++...++..+.+
T Consensus 36 ~fpGYvFV~~~~~~~~~~~i~~~~g 60 (145)
T TIGR00405 36 SLKGYILVEAETKIDMRNPIIGVPH 60 (145)
T ss_pred CCCcEEEEEEECcHHHHHHHhCCCC
Confidence 4889999999988777788765544
No 318
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.40 E-value=16 Score=37.62 Aligned_cols=63 Identities=8% Similarity=-0.031 Sum_probs=46.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 96 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~ 96 (450)
+.+.||..|+...++++|.-+|+.+|. |.-+.+.+..+ .+..+-.+||.-.+. +|..+|..+.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~--i~~~d~~~~~~-~~~~~v~~f~~~~~~-~~~~~i~~~k 65 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSI--ISMEDGSPYVN-GSLGEVTPFQHAKKA-NGPNYIQPQK 65 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcc--eeeccCCcccc-CCcceeeeeeeeecc-CcccccCHHH
Confidence 346688999999999999999999998 77776665443 555666788876543 5666665433
No 319
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=21.33 E-value=4.4e+02 Score=22.62 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=17.5
Q ss_pred cEEEEcCCC--CCchhHHHHHhhhccC
Q 013047 129 KTVFLDGVP--PHWKENQIRDQIKGYG 153 (450)
Q Consensus 129 ~~lfV~nLp--~~~te~dL~~~F~~~G 153 (450)
.+|+|++-. .+.+++++.+.+.++|
T Consensus 86 ~~i~vGG~~~~~~~~~~~~~~~l~~~G 112 (137)
T PRK02261 86 ILLYVGGNLVVGKHDFEEVEKKFKEMG 112 (137)
T ss_pred CeEEEECCCCCCccChHHHHHHHHHcC
Confidence 467777765 3455777778888888
No 320
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=21.32 E-value=2.5e+02 Score=25.95 Aligned_cols=47 Identities=21% Similarity=0.295 Sum_probs=33.3
Q ss_pred cHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 013047 43 TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 96 (450)
Q Consensus 43 te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~ 96 (450)
+.++.+++++++.. -. +.|..| |...|-+.+...+.++|..|++.+-
T Consensus 25 ~~~~A~~~l~~~~~--p~-~ViKad----Gla~GKGV~i~~~~~eA~~~l~~~~ 71 (194)
T PF01071_consen 25 DYEEALEYLEEQGY--PY-VVIKAD----GLAAGKGVVIADDREEALEALREIF 71 (194)
T ss_dssp SHHHHHHHHHHHSS--SE-EEEEES----SSCTTTSEEEESSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCC--Cc-eEEccC----CCCCCCEEEEeCCHHHHHHHHHHhc
Confidence 67888999999875 22 445544 4444455677799999999998753
No 321
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=20.98 E-value=7.2e+02 Score=25.05 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=23.6
Q ss_pred CCCCCCcHH----HHHHHHhhcCCCCe---eEEEEEeCCCCCCCeeeEEEEEeC
Q 013047 37 NICNTWTKE----AIKQKLKDYGVEGV---ENINLVSDIQHEGLSRGFAFVMFS 83 (450)
Q Consensus 37 nLp~~~te~----dL~~~F~~~G~~~V---~~i~l~~d~~~tg~skG~aFVeF~ 83 (450)
|.+++-+-| -+.-++++||. . .++++.+- --..+|=+=|.|.
T Consensus 119 ~~~~spsvD~~~~v~lP~l~~fG~--~~~~~~l~v~rr---G~yP~GgG~V~~~ 167 (341)
T cd00875 119 NSTGDPSVDSIRTATLPLLKKFGI--PDEELELKILKR---GVAPGGGGEVGFR 167 (341)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCC--CccceEEEEEec---cCCCCCCEEEEEE
Confidence 444544444 44455788995 3 46777663 1234455666665
No 322
>PF14893 PNMA: PNMA
Probab=20.86 E-value=64 Score=32.46 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=23.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhh
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKD 53 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~ 53 (450)
.....+.|.|.+||.++++++|++.+..
T Consensus 14 ~~~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 14 GVDPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred CcChhhhheeecCCCCCCHHHHHHHHHH
Confidence 3345678999999999999999988765
No 323
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=20.76 E-value=78 Score=31.30 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=18.5
Q ss_pred EEEEeCCHHHHHHHHHHhCCCe
Q 013047 173 GFIDFSTHEAAVACINAINNKE 194 (450)
Q Consensus 173 afV~F~s~e~A~~Ai~~l~g~~ 194 (450)
|||+|++.++|+.|++.+..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~ 22 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR 22 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC
Confidence 7999999999999998655544
No 324
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.75 E-value=3.4e+02 Score=21.57 Aligned_cols=53 Identities=8% Similarity=-0.004 Sum_probs=31.2
Q ss_pred CcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCC--HHHHHHHHHHhCC
Q 013047 42 WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMAAYKRLQK 97 (450)
Q Consensus 42 ~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~--~edA~~Al~~l~~ 97 (450)
-.--+|.+.|+.+|. .++.|.-...+ +....=.-||+|+- .+..++|++.|..
T Consensus 26 GsL~~vL~~Fa~~~I-NLt~IeSRP~~--~~~~~Y~FfVDieg~~~~~~~~~l~~L~~ 80 (90)
T cd04931 26 GALAKVLRLFEEKDI-NLTHIESRPSR--LNKDEYEFFINLDKKSAPALDPIIKSLRN 80 (90)
T ss_pred cHHHHHHHHHHHCCC-CEEEEEeccCC--CCCceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence 346788899999984 45555444432 22222256788874 3455667776644
No 325
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=20.54 E-value=5.1e+02 Score=24.83 Aligned_cols=66 Identities=14% Similarity=0.160 Sum_probs=41.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeE------------------------EEEEeCCCCCCCeeeEEEEEeCCH
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVEN------------------------INLVSDIQHEGLSRGFAFVMFSCH 85 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~------------------------i~l~~d~~~tg~skG~aFVeF~~~ 85 (450)
...|.++.|- ++++|.+|+.+.+..-|.+ +++.+.. ......--.+.+.+.
T Consensus 44 ~~~v~~G~lg---~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~--~~~~~~~~~~~v~~~ 118 (249)
T PF02571_consen 44 GLEVRVGRLG---DEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPS--WQPEPDDNWHYVDSY 118 (249)
T ss_pred CceEEECCCC---CHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCC--cccCCCCeEEEeCCH
Confidence 3467777663 6788888887776533333 4444432 111113348999999
Q ss_pred HHHHHHHHHhCCCCc
Q 013047 86 VDAMAAYKRLQKPDV 100 (450)
Q Consensus 86 edA~~Al~~l~~~~~ 100 (450)
++|.++++.+....+
T Consensus 119 ~eA~~~l~~~~~~~i 133 (249)
T PF02571_consen 119 EEAAELLKELGGGRI 133 (249)
T ss_pred HHHHHHHhhcCCCCE
Confidence 999999987763333
No 326
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=20.21 E-value=3.9e+02 Score=23.08 Aligned_cols=50 Identities=24% Similarity=0.338 Sum_probs=29.4
Q ss_pred CCCcHHHHHHHHhh-cC-CCCeeEEEEE--eCCCCCCCeeeEEEEEeCCHHHHHHH
Q 013047 40 NTWTKEAIKQKLKD-YG-VEGVENINLV--SDIQHEGLSRGFAFVMFSCHVDAMAA 91 (450)
Q Consensus 40 ~~~te~dL~~~F~~-~G-~~~V~~i~l~--~d~~~tg~skG~aFVeF~~~edA~~A 91 (450)
.+.+..+|++.+.+ |+ . ....|.|. ...-..+.+.|||.| |.+.+.|.+.
T Consensus 34 ~TpSr~eirekLA~~~~v~-d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk~ 87 (132)
T PTZ00071 34 GTVSKKDIKEKLAKQYKVA-DARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKKF 87 (132)
T ss_pred CCCCHHHHHHHHHHHhCCC-CCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35678888888876 45 2 12222222 222224678888876 6777666655
No 327
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=20.18 E-value=3.2e+02 Score=24.91 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=41.6
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 013047 32 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 95 (450)
Q Consensus 32 ~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l 95 (450)
.=||.|.+-..+=..|.+.|...|- +|+++..+.......+.-.|++++.+|..+++..+
T Consensus 20 VR~ItN~SSG~~G~~lA~~~~~~Ga----~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 20 VRFITNRSSGKMGAALAEEAARRGA----EVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp SEEEEES--SHHHHHHHHHHHHTT-----EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred ceEecCCCcCHHHHHHHHHHHHCCC----EEEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 4589999999999999999999885 57777665322335588999999999988887654
No 328
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.11 E-value=3.6e+02 Score=19.68 Aligned_cols=63 Identities=11% Similarity=-0.024 Sum_probs=41.0
Q ss_pred EEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCC
Q 013047 33 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 98 (450)
Q Consensus 33 lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~ 98 (450)
|.|.-....-.-.+|.+.+++.|. +|.++...... .+......-|+-.+.++.+..+++|...
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~-nI~~v~~~~~~--~~~~~~~~~vev~~~~~l~~i~~~L~~i 64 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGG-DIGAIDLVEQG--RDYTVRDITVDAPSEEHAETIVAAVRAL 64 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC-cEEEEEEEEec--CCEEEEEEEEEcCCHHHHHHHHHHHhcC
Confidence 344444445567889999999986 78887775532 2222222335567888888888887664
No 329
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=20.04 E-value=1.1e+02 Score=33.50 Aligned_cols=126 Identities=16% Similarity=0.178 Sum_probs=75.1
Q ss_pred hHHHHHhhCCCcccCCcccccCCCCCCCeEEEcCCCC--------CCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCee
Q 013047 4 LFLIYILIFPLKQICGKRCGTAPSEDNDTLFVGNICN--------TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75 (450)
Q Consensus 4 ~~~~~le~~~~~~~~~k~~~~~~~~~~~~lyV~nLp~--------~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~sk 75 (450)
+...|+..+|...+.|.-+..+ +.--|+|.+=.. -+...||++.+..|-. |.+.-++--+.+.+-..
T Consensus 465 f~~~yf~k~pg~y~tGD~~~rd---~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~--VaEsAvVg~p~~~~ge~ 539 (626)
T KOG1175|consen 465 FRAAYFKKFPGYYFTGDGGRRD---EDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPA--VAESAVVGSPDPIKGEV 539 (626)
T ss_pred hhhhhcccCCceEEecCceEEc---CCceEEEEecccccccccceeecHHHHHHHHhhCcc--hhheeeecCCCCCCCeE
Confidence 3445666677777777777665 223444432221 2568899999999988 99988886544333333
Q ss_pred eEEEEEeCCHHHHHHHH-HHhCCCCcccCCCCceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhcc
Q 013047 76 GFAFVMFSCHVDAMAAY-KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 152 (450)
Q Consensus 76 G~aFVeF~~~edA~~Al-~~l~~~~~~~g~~gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~ 152 (450)
=+|||.+++.+.....| ++|... + +-..+ ....+.+.++|.+||.+.+-+.++..+.+.
T Consensus 540 v~aFvvl~~g~~~~~~L~kel~~~-V---------R~~ig--------p~a~P~~I~~v~~LPkTrSGKimRr~lrki 599 (626)
T KOG1175|consen 540 VLAFVVLKSGSHDPEQLTKELVKH-V---------RSVIG--------PYAVPRLIVFVPGLPKTRSGKIMRRALRKI 599 (626)
T ss_pred EEEEEEEcCCCCChHHHHHHHHHH-H---------HhhcC--------cccccceeEecCCCCccccchhHHHHHHHH
Confidence 58999998654333332 222211 1 10000 011244678899999998887777776653
Done!