Query 013047
Match_columns 450
No_of_seqs 374 out of 3081
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 03:13:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 7.9E-34 2.7E-38 265.6 19.9 168 26-205 11-178 (213)
2 1fxl_A Paraneoplastic encephal 100.0 3.7E-33 1.3E-37 248.9 22.0 165 30-206 2-166 (167)
3 3md3_A Nuclear and cytoplasmic 100.0 5.6E-33 1.9E-37 247.5 21.2 163 31-204 1-163 (166)
4 1l3k_A Heterogeneous nuclear r 100.0 4.1E-33 1.4E-37 255.8 20.2 171 26-205 9-180 (196)
5 1b7f_A Protein (SXL-lethal pro 100.0 1E-32 3.5E-37 246.7 21.0 163 29-203 2-166 (168)
6 2qfj_A FBP-interacting repress 100.0 6.2E-33 2.1E-37 258.5 20.2 171 29-206 27-203 (216)
7 3nmr_A Cugbp ELAV-like family 100.0 7.1E-32 2.4E-36 242.6 21.6 167 29-204 2-173 (175)
8 3smz_A Protein raver-1, ribonu 100.0 2.6E-31 9E-36 258.6 21.7 192 4-205 69-261 (284)
9 2cjk_A Nuclear polyadenylated 100.0 8.7E-32 3E-36 240.6 12.5 161 29-204 2-162 (167)
10 2g4b_A Splicing factor U2AF 65 100.0 1.9E-30 6.3E-35 233.1 18.1 157 29-204 3-170 (172)
11 2ghp_A U4/U6 snRNA-associated 100.0 1.3E-30 4.5E-35 254.7 17.4 189 5-204 94-287 (292)
12 3tyt_A Heterogeneous nuclear r 100.0 1.4E-30 4.6E-35 242.4 16.2 157 29-199 3-194 (205)
13 3pgw_A U1-A; protein-RNA compl 100.0 1.2E-29 4.1E-34 246.7 22.1 165 26-205 5-280 (282)
14 2yh0_A Splicing factor U2AF 65 100.0 6.8E-30 2.3E-34 234.7 18.6 162 29-204 3-190 (198)
15 1fje_B Nucleolin RBD12, protei 100.0 8.7E-31 3E-35 236.3 11.8 164 24-204 7-170 (175)
16 2adc_A Polypyrimidine tract-bi 100.0 6.4E-29 2.2E-33 234.8 19.8 162 27-205 31-225 (229)
17 1qm9_A Polypyrimidine tract-bi 100.0 5.6E-29 1.9E-33 229.2 16.0 161 29-206 2-195 (198)
18 3sde_A Paraspeckle component 1 100.0 3.2E-28 1.1E-32 234.6 19.4 155 27-206 19-177 (261)
19 3smz_A Protein raver-1, ribonu 100.0 1.2E-27 4.1E-32 232.7 19.6 152 29-205 21-172 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 8.8E-28 3E-32 234.6 17.3 156 26-204 37-193 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 3.7E-22 1.3E-26 177.3 16.3 143 61-206 2-148 (158)
22 4f25_A Polyadenylate-binding p 99.9 4.1E-22 1.4E-26 167.9 11.2 107 29-144 4-113 (115)
23 2i2y_A Fusion protein consists 99.8 2.2E-20 7.4E-25 164.6 12.6 125 71-205 9-145 (150)
24 4fxv_A ELAV-like protein 1; RN 99.8 5.5E-20 1.9E-24 150.7 11.6 81 29-116 18-98 (99)
25 3pgw_S U1-70K; protein-RNA com 99.8 2.5E-20 8.5E-25 191.9 8.3 156 46-206 8-180 (437)
26 2lxi_A RNA-binding protein 10; 99.8 6.8E-20 2.3E-24 147.7 6.9 85 30-121 1-87 (91)
27 2lkz_A RNA-binding protein 5; 99.8 2.3E-19 7.8E-24 145.8 7.7 91 25-116 4-94 (95)
28 3s8s_A Histone-lysine N-methyl 99.8 1E-18 3.5E-23 145.9 11.7 83 28-117 4-86 (110)
29 3lqv_A PRE-mRNA branch site pr 99.8 3.8E-19 1.3E-23 149.3 8.4 105 27-154 5-109 (115)
30 2dnz_A Probable RNA-binding pr 99.8 3.3E-18 1.1E-22 138.3 12.3 87 27-120 2-88 (95)
31 2do4_A Squamous cell carcinoma 99.8 3.8E-18 1.3E-22 139.5 12.7 90 22-119 9-98 (100)
32 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.5E-18 8.4E-23 136.7 10.8 84 27-117 3-86 (87)
33 2cpz_A CUG triplet repeat RNA- 99.8 5.7E-18 1.9E-22 142.2 12.9 89 26-121 21-109 (115)
34 3md1_A Nuclear and cytoplasmic 99.8 4.2E-18 1.5E-22 134.1 11.1 81 31-118 2-82 (83)
35 1whw_A Hypothetical protein ri 99.8 3.5E-18 1.2E-22 139.4 10.8 87 27-120 5-91 (99)
36 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.7E-18 9.4E-23 153.7 10.9 126 80-207 11-151 (165)
37 1x5s_A Cold-inducible RNA-bind 99.8 4.1E-18 1.4E-22 139.7 11.0 88 26-120 8-95 (102)
38 2cq0_A Eukaryotic translation 99.8 3.4E-18 1.2E-22 140.6 10.5 89 26-121 11-99 (103)
39 2dnh_A Bruno-like 5, RNA bindi 99.8 8.5E-18 2.9E-22 138.6 12.9 90 27-121 12-101 (105)
40 2hvz_A Splicing factor, argini 99.8 1.6E-18 5.4E-23 142.1 8.4 95 31-137 1-100 (101)
41 1x5u_A Splicing factor 3B subu 99.8 5.5E-18 1.9E-22 139.7 11.7 88 26-120 11-98 (105)
42 2dgs_A DAZ-associated protein 99.8 5.3E-18 1.8E-22 138.4 11.4 87 27-121 7-93 (99)
43 2dgo_A Cytotoxic granule-assoc 99.7 1.1E-17 3.8E-22 140.3 13.4 88 26-120 11-98 (115)
44 4fxv_A ELAV-like protein 1; RN 99.7 4.3E-18 1.5E-22 139.3 10.6 79 127-205 18-96 (99)
45 1x5t_A Splicing factor 3B subu 99.7 3E-18 1E-22 138.9 9.5 88 27-121 2-90 (96)
46 2lea_A Serine/arginine-rich sp 99.7 9.7E-19 3.3E-23 151.5 6.9 120 77-206 6-125 (135)
47 2dgp_A Bruno-like 4, RNA bindi 99.7 4.6E-18 1.6E-22 140.5 10.7 91 26-120 9-99 (106)
48 3p5t_L Cleavage and polyadenyl 99.7 1.5E-18 5E-23 139.4 7.4 82 31-119 2-85 (90)
49 1x4h_A RNA-binding protein 28; 99.7 8.6E-18 2.9E-22 139.9 12.2 89 26-121 11-105 (111)
50 2dnm_A SRP46 splicing factor; 99.7 3.8E-18 1.3E-22 140.3 9.8 87 27-120 10-96 (103)
51 2cqb_A Peptidyl-prolyl CIS-tra 99.7 3.2E-18 1.1E-22 140.4 9.2 89 26-121 8-96 (102)
52 2d9p_A Polyadenylate-binding p 99.7 9.6E-18 3.3E-22 137.9 12.1 88 25-121 10-97 (103)
53 2cpf_A RNA binding motif prote 99.7 7.1E-18 2.4E-22 137.3 11.2 88 27-120 2-91 (98)
54 3mdf_A Peptidyl-prolyl CIS-tra 99.7 5.5E-18 1.9E-22 134.1 10.1 82 27-115 4-85 (85)
55 1p27_B RNA-binding protein 8A; 99.7 7.8E-18 2.7E-22 139.1 11.4 86 26-118 19-104 (106)
56 2cph_A RNA binding motif prote 99.7 1.1E-17 3.7E-22 138.4 11.9 90 26-121 11-101 (107)
57 2cqc_A Arginine/serine-rich sp 99.7 1E-17 3.5E-22 135.4 11.3 84 26-116 11-94 (95)
58 2div_A TRNA selenocysteine ass 99.7 7.8E-18 2.7E-22 137.3 10.6 86 26-118 5-95 (99)
59 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.6E-17 5.4E-22 136.5 12.5 88 25-121 10-97 (103)
60 2fy1_A RNA-binding motif prote 99.7 9.9E-18 3.4E-22 141.2 11.3 86 26-119 3-88 (116)
61 2dgv_A HnRNP M, heterogeneous 99.7 1.4E-17 4.9E-22 133.7 11.7 84 27-119 5-88 (92)
62 1oo0_B CG8781-PA, drosophila Y 99.7 6.4E-18 2.2E-22 140.6 9.8 88 25-119 21-108 (110)
63 3s8s_A Histone-lysine N-methyl 99.7 9.3E-18 3.2E-22 140.1 10.8 79 127-205 5-83 (110)
64 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.1E-17 3.9E-22 148.1 11.9 82 125-206 36-117 (156)
65 2x1f_A MRNA 3'-END-processing 99.7 9.2E-18 3.2E-22 136.2 10.3 84 30-120 2-85 (96)
66 2cpe_A RNA-binding protein EWS 99.7 9.4E-18 3.2E-22 140.3 10.4 90 24-120 9-106 (113)
67 2dis_A Unnamed protein product 99.7 1E-17 3.5E-22 139.1 10.4 95 24-124 2-99 (109)
68 2la6_A RNA-binding protein FUS 99.7 2.2E-17 7.6E-22 134.7 12.2 83 26-115 9-99 (99)
69 3ns6_A Eukaryotic translation 99.7 3.4E-18 1.2E-22 140.1 7.2 82 29-117 5-93 (100)
70 2jrs_A RNA-binding protein 39; 99.7 1.5E-17 5E-22 138.4 11.1 85 27-118 23-107 (108)
71 2e5h_A Zinc finger CCHC-type a 99.7 1.2E-17 4.2E-22 134.7 10.2 83 26-115 12-94 (94)
72 4a8x_A RNA-binding protein wit 99.7 1.1E-17 3.7E-22 133.1 9.7 85 28-118 2-86 (88)
73 2cqd_A RNA-binding region cont 99.7 1.7E-17 5.8E-22 139.5 11.0 87 25-119 12-98 (116)
74 3ex7_B RNA-binding protein 8A; 99.7 1.1E-17 3.8E-22 142.7 10.0 89 25-120 17-105 (126)
75 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.8E-17 9.4E-22 145.6 12.8 84 28-118 37-120 (156)
76 1u6f_A Tcubp1, RNA-binding pro 99.7 2.2E-17 7.6E-22 143.2 11.9 87 27-120 39-125 (139)
77 2kxn_B Transformer-2 protein h 99.7 1.3E-17 4.4E-22 143.2 10.2 86 26-118 42-127 (129)
78 2cq3_A RNA-binding protein 9; 99.7 3.5E-17 1.2E-21 134.4 12.4 87 26-121 11-97 (103)
79 2do0_A HnRNP M, heterogeneous 99.7 3.7E-17 1.3E-21 136.8 12.7 86 26-119 11-96 (114)
80 2ywk_A Putative RNA-binding pr 99.7 1.7E-17 5.7E-22 134.2 10.1 82 26-115 12-93 (95)
81 2dhg_A TRNA selenocysteine ass 99.7 2.2E-17 7.4E-22 135.9 10.8 86 27-120 6-93 (104)
82 2dng_A Eukaryotic translation 99.7 2.9E-17 9.9E-22 135.0 11.5 86 26-120 11-96 (103)
83 1x4a_A Splicing factor, argini 99.7 3E-17 1E-21 136.4 11.7 87 24-120 16-102 (109)
84 2dh8_A DAZ-associated protein 99.7 1.6E-17 5.5E-22 137.0 9.6 87 26-120 12-98 (105)
85 3q2s_C Cleavage and polyadenyl 99.7 5.8E-18 2E-22 159.7 7.7 80 127-206 67-148 (229)
86 3ulh_A THO complex subunit 4; 99.7 3.3E-17 1.1E-21 135.5 11.2 82 26-115 25-106 (107)
87 1sjq_A Polypyrimidine tract-bi 99.7 2.7E-17 9.2E-22 135.5 10.2 83 26-121 12-96 (105)
88 2dgw_A Probable RNA-binding pr 99.7 4.6E-17 1.6E-21 130.7 11.3 84 26-119 6-89 (91)
89 3ucg_A Polyadenylate-binding p 99.7 3.1E-17 1.1E-21 130.8 10.2 81 29-117 5-85 (89)
90 3n9u_C Cleavage and polyadenyl 99.7 2E-17 6.8E-22 146.7 10.0 82 29-117 54-137 (156)
91 1p1t_A Cleavage stimulation fa 99.7 2.5E-17 8.6E-22 135.4 9.8 84 29-119 7-90 (104)
92 3r27_A HnRNP L, heterogeneous 99.7 3.5E-17 1.2E-21 133.5 10.4 81 27-118 18-98 (100)
93 1wi8_A EIF-4B, eukaryotic tran 99.7 2.9E-17 9.8E-22 135.3 9.9 89 25-121 10-98 (104)
94 3s7r_A Heterogeneous nuclear r 99.7 4.4E-17 1.5E-21 129.6 10.4 81 26-114 7-87 (87)
95 1s79_A Lupus LA protein; RRM, 99.7 2.2E-17 7.4E-22 136.2 8.9 82 26-116 7-88 (103)
96 3ex7_B RNA-binding protein 8A; 99.7 3.7E-17 1.3E-21 139.4 10.6 83 125-207 19-101 (126)
97 2cqg_A TDP-43, TAR DNA-binding 99.7 9.5E-17 3.3E-21 131.9 12.4 87 26-121 11-97 (103)
98 1x5o_A RNA binding motif, sing 99.7 8.4E-17 2.9E-21 134.7 12.2 89 25-117 20-112 (114)
99 2cpi_A CCR4-NOT transcription 99.7 2.4E-17 8.1E-22 137.7 8.8 93 20-118 5-102 (111)
100 2cqd_A RNA-binding region cont 99.7 6.2E-17 2.1E-21 136.0 11.4 80 125-205 14-93 (116)
101 1wez_A HnRNP H', FTP-3, hetero 99.7 3.1E-17 1E-21 135.0 9.2 84 26-119 11-94 (102)
102 1x4e_A RNA binding motif, sing 99.7 7.8E-18 2.7E-22 133.4 5.4 81 27-114 2-82 (85)
103 2cqp_A RNA-binding protein 12; 99.7 1.9E-17 6.4E-22 134.8 7.8 83 28-117 13-95 (98)
104 2dgx_A KIAA0430 protein; RRM d 99.7 5.4E-17 1.8E-21 131.8 10.3 83 27-119 6-92 (96)
105 2m2b_A RNA-binding protein 10; 99.7 1.1E-17 3.9E-22 143.8 6.6 87 26-120 19-111 (131)
106 2rs2_A Musashi-1, RNA-binding 99.7 3.7E-17 1.3E-21 136.1 9.4 86 26-119 21-106 (109)
107 2wbr_A GW182, gawky, LD47780P; 99.7 5.5E-17 1.9E-21 128.2 9.8 73 29-114 6-78 (89)
108 1x4d_A Matrin 3; structural ge 99.7 3.7E-17 1.3E-21 134.3 9.1 82 27-119 12-94 (102)
109 2ek1_A RNA-binding protein 12; 99.7 1.6E-17 5.5E-22 134.3 6.7 80 29-115 14-93 (95)
110 2dnz_A Probable RNA-binding pr 99.7 1.1E-16 3.8E-21 129.3 11.5 79 127-205 4-82 (95)
111 2cq0_A Eukaryotic translation 99.7 9.4E-17 3.2E-21 131.9 11.2 79 126-204 13-91 (103)
112 2dgo_A Cytotoxic granule-assoc 99.7 2.5E-16 8.5E-21 132.0 14.0 81 125-205 12-92 (115)
113 2khc_A Testis-specific RNP-typ 99.7 2.4E-17 8.2E-22 138.9 7.8 82 27-115 37-118 (118)
114 4f02_A Polyadenylate-binding p 99.7 2.4E-17 8.1E-22 153.6 8.4 125 4-137 69-201 (213)
115 2err_A Ataxin-2-binding protei 99.7 4.6E-17 1.6E-21 135.5 9.1 86 23-117 22-107 (109)
116 2mss_A Protein (musashi1); RNA 99.7 2.6E-17 8.9E-22 127.1 7.1 75 32-114 1-75 (75)
117 1x5s_A Cold-inducible RNA-bind 99.7 9.3E-17 3.2E-21 131.6 10.8 82 126-207 10-91 (102)
118 2dgs_A DAZ-associated protein 99.7 1.7E-16 5.8E-21 129.4 12.0 79 126-205 8-86 (99)
119 1whw_A Hypothetical protein ri 99.7 1.1E-16 3.8E-21 130.4 10.9 79 127-205 7-85 (99)
120 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.2E-16 4.2E-21 126.8 10.9 79 127-205 5-83 (87)
121 1p27_B RNA-binding protein 8A; 99.7 1.6E-16 5.6E-21 131.1 12.0 82 125-206 20-101 (106)
122 2dnm_A SRP46 splicing factor; 99.7 6.5E-17 2.2E-21 132.9 9.6 80 126-205 11-90 (103)
123 3md1_A Nuclear and cytoplasmic 99.7 1.2E-16 4.1E-21 125.7 10.7 77 129-205 2-78 (83)
124 3p5t_L Cleavage and polyadenyl 99.7 1.8E-17 6.1E-22 133.0 5.9 78 129-206 2-81 (90)
125 2kt5_A RNA and export factor-b 99.7 1.1E-16 3.7E-21 136.2 11.0 86 27-120 32-117 (124)
126 2cpz_A CUG triplet repeat RNA- 99.7 9.8E-17 3.3E-21 134.6 10.6 80 126-205 23-102 (115)
127 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.4E-17 8.2E-22 127.8 6.3 76 31-114 1-76 (77)
128 2fy1_A RNA-binding motif prote 99.7 1.7E-16 5.9E-21 133.6 12.0 78 127-205 6-83 (116)
129 1wg5_A Heterogeneous nuclear r 99.7 7.2E-17 2.5E-21 133.1 9.5 84 26-118 11-95 (104)
130 1wex_A Hypothetical protein (r 99.7 1.3E-16 4.6E-21 131.6 11.1 84 27-121 12-95 (104)
131 2lkz_A RNA-binding protein 5; 99.7 1.6E-17 5.5E-22 134.8 5.3 79 127-205 8-92 (95)
132 2lea_A Serine/arginine-rich sp 99.7 3.5E-17 1.2E-21 141.7 7.7 86 28-120 45-130 (135)
133 2cpy_A RNA-binding protein 12; 99.7 2.4E-17 8E-22 138.4 6.1 83 26-117 11-94 (114)
134 1x4b_A Heterogeneous nuclear r 99.7 8.2E-17 2.8E-21 135.2 9.4 83 30-120 27-109 (116)
135 3mdf_A Peptidyl-prolyl CIS-tra 99.7 9.3E-17 3.2E-21 126.9 9.1 79 127-205 6-84 (85)
136 2kn4_A Immunoglobulin G-bindin 99.7 1.4E-16 4.9E-21 141.1 11.4 86 28-120 68-153 (158)
137 3q2s_C Cleavage and polyadenyl 99.7 6.2E-17 2.1E-21 152.6 9.5 80 29-115 67-148 (229)
138 2d9p_A Polyadenylate-binding p 99.7 2.8E-16 9.4E-21 129.1 12.1 79 125-205 12-90 (103)
139 2nlw_A Eukaryotic translation 99.7 9.9E-17 3.4E-21 132.5 9.5 82 28-118 13-101 (105)
140 2ad9_A Polypyrimidine tract-bi 99.7 1.5E-16 5.2E-21 134.1 10.7 82 27-121 28-111 (119)
141 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.4E-16 4.7E-21 142.5 11.1 86 27-119 69-154 (165)
142 2lxi_A RNA-binding protein 10; 99.7 1.5E-17 5E-22 133.9 4.3 77 128-204 1-79 (91)
143 2div_A TRNA selenocysteine ass 99.7 1.4E-16 4.6E-21 129.9 10.1 86 126-211 7-93 (99)
144 2cq4_A RNA binding motif prote 99.7 4.2E-17 1.4E-21 136.6 7.1 81 29-117 24-104 (114)
145 2fc8_A NCL protein; structure 99.7 1.5E-16 5E-21 130.4 10.2 86 25-120 10-95 (102)
146 3ns6_A Eukaryotic translation 99.7 9E-17 3.1E-21 131.6 8.9 79 127-205 5-90 (100)
147 2cqc_A Arginine/serine-rich sp 99.7 1.5E-16 5.2E-21 128.4 10.0 80 125-204 12-91 (95)
148 1why_A Hypothetical protein ri 99.7 2.4E-16 8.3E-21 128.0 11.2 83 24-119 11-95 (97)
149 2dnh_A Bruno-like 5, RNA bindi 99.7 3.5E-16 1.2E-20 128.8 12.3 78 126-204 13-93 (105)
150 1u6f_A Tcubp1, RNA-binding pro 99.7 4E-16 1.4E-20 135.2 13.3 79 126-204 40-118 (139)
151 1x4c_A Splicing factor, argini 99.7 1.8E-16 6.1E-21 131.6 10.5 80 27-120 12-96 (108)
152 2cph_A RNA binding motif prote 99.7 3E-16 1E-20 129.6 11.7 81 125-205 12-94 (107)
153 2ki2_A SS-DNA binding protein 99.7 2.5E-17 8.6E-22 131.8 5.0 81 31-119 2-82 (90)
154 1x5u_A Splicing factor 3B subu 99.7 1.9E-16 6.4E-21 130.5 10.3 79 126-204 13-91 (105)
155 2la6_A RNA-binding protein FUS 99.7 2.7E-16 9.1E-21 128.3 10.9 80 125-204 10-97 (99)
156 1x5t_A Splicing factor 3B subu 99.7 1E-16 3.5E-21 129.8 8.4 79 127-205 4-83 (96)
157 2j76_E EIF-4B, EIF4B, eukaryot 99.7 4.8E-17 1.6E-21 133.2 6.4 85 26-118 15-99 (100)
158 2cqb_A Peptidyl-prolyl CIS-tra 99.7 9.2E-17 3.1E-21 131.6 8.1 80 126-205 10-89 (102)
159 1x4h_A RNA-binding protein 28; 99.7 2.4E-16 8.3E-21 131.1 10.8 81 125-205 12-98 (111)
160 2cpf_A RNA binding motif prote 99.7 1.2E-16 4.3E-21 129.8 8.8 78 127-204 4-84 (98)
161 2jwn_A Embryonic polyadenylate 99.7 1.8E-16 6.2E-21 134.7 10.2 82 30-119 36-117 (124)
162 2fc9_A NCL protein; structure 99.7 1.8E-16 6.1E-21 129.7 9.7 84 26-120 11-94 (101)
163 2qfj_A FBP-interacting repress 99.7 4.4E-16 1.5E-20 144.2 13.6 109 4-119 82-207 (216)
164 2cq1_A PTB-like protein L; RRM 99.7 2E-16 6.8E-21 129.8 9.9 80 28-120 13-94 (101)
165 2do4_A Squamous cell carcinoma 99.7 3.5E-16 1.2E-20 127.7 11.4 78 126-204 15-92 (100)
166 2dnq_A RNA-binding protein 4B; 99.7 3E-16 1E-20 125.7 10.7 81 26-121 4-84 (90)
167 2dng_A Eukaryotic translation 99.7 3.5E-16 1.2E-20 128.5 11.4 79 125-205 12-90 (103)
168 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.6E-16 5.6E-21 137.6 9.7 81 27-114 60-140 (140)
169 2e5h_A Zinc finger CCHC-type a 99.7 1.6E-16 5.5E-21 128.1 8.9 79 126-204 14-92 (94)
170 2krb_A Eukaryotic translation 99.7 7.8E-17 2.7E-21 126.5 6.8 73 30-111 1-80 (81)
171 2x1f_A MRNA 3'-END-processing 99.7 2.6E-16 8.9E-21 127.6 10.0 78 128-205 2-79 (96)
172 3ulh_A THO complex subunit 4; 99.7 3.6E-16 1.2E-20 129.2 11.0 80 125-205 26-105 (107)
173 2e5j_A Methenyltetrahydrofolat 99.7 2.4E-16 8.4E-21 128.0 9.7 82 26-119 15-96 (97)
174 2a3j_A U1 small nuclear ribonu 99.7 3.2E-16 1.1E-20 134.0 10.6 82 27-118 26-111 (127)
175 1nu4_A U1A RNA binding domain; 99.7 1.2E-16 4E-21 129.7 7.5 84 26-119 4-91 (97)
176 1oo0_B CG8781-PA, drosophila Y 99.7 3.8E-16 1.3E-20 129.8 10.8 82 125-206 23-104 (110)
177 2dhg_A TRNA selenocysteine ass 99.7 3E-16 1E-20 129.0 9.9 78 127-205 8-87 (104)
178 2hgn_A Heterogeneous nuclear r 99.7 2.2E-17 7.4E-22 143.5 3.1 119 75-204 1-119 (139)
179 2do0_A HnRNP M, heterogeneous 99.7 9.3E-16 3.2E-20 128.2 13.0 79 126-205 13-91 (114)
180 1wel_A RNA-binding protein 12; 99.7 7.3E-17 2.5E-21 137.4 6.3 83 26-116 21-103 (124)
181 2cq3_A RNA-binding protein 9; 99.7 9.6E-16 3.3E-20 125.8 12.7 79 125-205 12-90 (103)
182 2dgp_A Bruno-like 4, RNA bindi 99.7 3.3E-16 1.1E-20 129.2 9.9 80 126-205 11-93 (106)
183 2jrs_A RNA-binding protein 39; 99.7 4.4E-16 1.5E-20 129.3 10.6 81 125-205 23-103 (108)
184 1fj7_A Nucleolin RBD1, protein 99.7 3.7E-17 1.3E-21 133.8 4.0 84 27-119 14-97 (101)
185 2cpx_A Hypothetical protein FL 99.7 1.1E-16 3.7E-21 134.1 6.9 89 26-121 21-109 (115)
186 2khc_A Testis-specific RNP-typ 99.7 2.5E-16 8.7E-21 132.6 9.1 81 125-205 37-117 (118)
187 2g4b_A Splicing factor U2AF 65 99.7 4.2E-16 1.5E-20 139.1 11.1 103 5-115 64-172 (172)
188 2ywk_A Putative RNA-binding pr 99.7 3.5E-16 1.2E-20 126.3 9.4 78 126-204 14-91 (95)
189 3md3_A Nuclear and cytoplasmic 99.6 7.1E-16 2.4E-20 136.4 12.2 105 4-115 53-165 (166)
190 2cpj_A Non-POU domain-containi 99.6 4.8E-16 1.6E-20 126.7 10.2 81 26-119 11-91 (99)
191 4f25_A Polyadenylate-binding p 99.6 4.2E-16 1.5E-20 130.9 10.1 75 128-204 5-79 (115)
192 2dgu_A Heterogeneous nuclear r 99.6 5.3E-16 1.8E-20 127.5 10.4 79 28-121 9-87 (103)
193 1s79_A Lupus LA protein; RRM, 99.6 4E-16 1.4E-20 128.5 9.6 79 127-207 10-88 (103)
194 2dgt_A RNA-binding protein 30; 99.6 5.7E-16 2E-20 124.5 10.3 80 26-120 6-85 (92)
195 2db1_A Heterogeneous nuclear r 99.6 2.4E-16 8.2E-21 133.1 8.5 82 27-115 14-96 (118)
196 2jvr_A Nucleolar protein 3; RN 99.6 2.4E-16 8.1E-21 131.6 8.3 79 27-116 25-104 (111)
197 2dnp_A RNA-binding protein 14; 99.6 6.2E-16 2.1E-20 123.8 10.4 79 26-119 5-83 (90)
198 2cpe_A RNA-binding protein EWS 99.6 3E-16 1E-20 131.1 8.8 79 126-204 13-99 (113)
199 1wi8_A EIF-4B, eukaryotic tran 99.6 5.3E-16 1.8E-20 127.6 10.2 78 126-205 13-91 (104)
200 2dnn_A RNA-binding protein 12; 99.6 2.9E-16 9.9E-21 130.7 8.6 77 29-115 15-91 (109)
201 4a8x_A RNA-binding protein wit 99.6 3.7E-16 1.3E-20 124.2 8.8 79 127-205 3-82 (88)
202 1x4f_A Matrin 3; structural ge 99.6 2.6E-16 9.1E-21 131.2 8.3 83 27-120 22-105 (112)
203 1iqt_A AUF1, heterogeneous nuc 99.6 1.1E-16 3.7E-21 123.5 5.5 75 32-114 1-75 (75)
204 1x4g_A Nucleolysin TIAR; struc 99.6 3.9E-16 1.4E-20 129.6 9.3 82 26-120 21-102 (109)
205 2dha_A FLJ20171 protein; RRM d 99.6 1.9E-16 6.4E-21 134.7 7.4 82 27-115 20-103 (123)
206 2cpd_A Apobec-1 stimulating pr 99.6 1E-15 3.5E-20 124.7 11.4 80 25-119 10-91 (99)
207 2ek1_A RNA-binding protein 12; 99.6 2.1E-16 7.3E-21 127.6 7.0 78 127-204 14-91 (95)
208 2cqp_A RNA-binding protein 12; 99.6 3.3E-16 1.1E-20 127.4 8.1 80 126-205 13-92 (98)
209 2hgl_A HNRPF protein, heteroge 99.6 3.3E-16 1.1E-20 135.5 8.4 82 27-115 41-123 (136)
210 3s7r_A Heterogeneous nuclear r 99.6 7.5E-16 2.6E-20 122.4 9.9 78 126-204 9-86 (87)
211 2kxn_B Transformer-2 protein h 99.6 3.7E-16 1.3E-20 134.1 8.7 80 126-205 44-123 (129)
212 3n9u_C Cleavage and polyadenyl 99.6 6.5E-16 2.2E-20 137.0 10.5 79 127-205 54-134 (156)
213 1p1t_A Cleavage stimulation fa 99.6 3E-16 1E-20 128.9 7.8 80 126-205 6-85 (104)
214 2dgx_A KIAA0430 protein; RRM d 99.6 5.8E-16 2E-20 125.7 9.3 76 127-205 8-87 (96)
215 1b7f_A Protein (SXL-lethal pro 99.6 1.1E-15 3.9E-20 135.6 12.0 106 4-114 57-168 (168)
216 2yh0_A Splicing factor U2AF 65 99.6 8.6E-16 2.9E-20 140.3 11.5 107 5-119 64-196 (198)
217 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.3E-15 4.4E-20 125.1 11.3 78 126-205 13-90 (103)
218 2dgv_A HnRNP M, heterogeneous 99.6 8.4E-16 2.9E-20 123.3 10.0 78 126-205 6-83 (92)
219 2dgu_A Heterogeneous nuclear r 99.6 1.2E-15 4.2E-20 125.3 11.0 73 125-205 8-80 (103)
220 2ytc_A PRE-mRNA-splicing facto 99.6 8.2E-16 2.8E-20 121.5 9.6 76 27-115 9-85 (85)
221 3ucg_A Polyadenylate-binding p 99.6 8E-16 2.7E-20 122.6 9.5 77 127-204 5-81 (89)
222 2lcw_A RNA-binding protein FUS 99.4 2.1E-17 7.2E-22 138.9 0.0 87 27-120 4-98 (116)
223 2dh8_A DAZ-associated protein 99.6 4.5E-16 1.5E-20 128.2 8.0 77 125-202 13-89 (105)
224 2cq4_A RNA binding motif prote 99.6 4.7E-16 1.6E-20 130.2 8.2 78 127-205 24-101 (114)
225 3nmr_A Cugbp ELAV-like family 99.6 1.4E-15 4.8E-20 135.8 11.9 82 29-115 94-175 (175)
226 2la4_A Nuclear and cytoplasmic 99.6 5.5E-16 1.9E-20 126.8 8.4 78 27-117 24-101 (101)
227 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 8.4E-16 2.9E-20 133.0 10.0 80 125-204 60-139 (140)
228 2jvo_A Nucleolar protein 3; nu 99.6 9E-16 3.1E-20 127.5 9.6 79 26-119 27-105 (108)
229 1x4e_A RNA binding motif, sing 99.6 2.2E-16 7.5E-21 124.9 5.5 75 127-201 4-78 (85)
230 1x4c_A Splicing factor, argini 99.6 1.5E-15 5.1E-20 126.0 10.8 65 126-197 13-77 (108)
231 1fjc_A Nucleolin RBD2, protein 99.6 5.3E-16 1.8E-20 125.6 7.9 82 26-119 12-93 (96)
232 2e44_A Insulin-like growth fac 99.6 1.5E-15 5.1E-20 122.9 10.5 83 25-118 10-93 (96)
233 1fxl_A Paraneoplastic encephal 99.6 2.1E-15 7.2E-20 133.5 12.3 107 3-114 55-167 (167)
234 1wez_A HnRNP H', FTP-3, hetero 99.6 1.1E-15 3.7E-20 125.7 9.6 76 127-205 14-89 (102)
235 2m2b_A RNA-binding protein 10; 99.6 3.2E-16 1.1E-20 134.7 6.7 80 125-205 20-105 (131)
236 2f3j_A RNA and export factor b 99.6 8E-16 2.8E-20 139.3 9.7 82 28-117 86-167 (177)
237 2kt5_A RNA and export factor-b 99.6 1.4E-15 4.9E-20 129.2 10.7 82 125-207 32-113 (124)
238 2hgn_A Heterogeneous nuclear r 99.6 1.7E-16 5.8E-21 137.8 4.9 83 27-119 43-125 (139)
239 1x4d_A Matrin 3; structural ge 99.6 1.4E-15 4.7E-20 124.9 10.0 75 126-206 13-90 (102)
240 1x4a_A Splicing factor, argini 99.6 2.2E-15 7.6E-20 125.0 11.5 76 126-204 20-95 (109)
241 2mss_A Protein (musashi1); RNA 99.6 3.3E-16 1.1E-20 120.9 5.9 74 130-204 1-74 (75)
242 2jwn_A Embryonic polyadenylate 99.6 9.7E-16 3.3E-20 130.1 9.4 78 127-205 35-112 (124)
243 2dis_A Unnamed protein product 99.6 1.3E-15 4.4E-20 126.3 9.6 80 127-206 7-90 (109)
244 2xs2_A Deleted in azoospermia- 99.6 4E-16 1.4E-20 127.9 6.4 81 29-119 8-88 (102)
245 1sjr_A Polypyrimidine tract-bi 99.6 2E-15 6.7E-20 133.9 11.1 83 28-119 44-126 (164)
246 3pgw_S U1-70K; protein-RNA com 99.6 1.6E-15 5.3E-20 156.1 12.2 83 28-117 100-182 (437)
247 1l3k_A Heterogeneous nuclear r 99.6 2.2E-15 7.5E-20 137.3 11.6 108 5-121 68-187 (196)
248 2cqg_A TDP-43, TAR DNA-binding 99.6 2.7E-15 9.4E-20 123.1 11.1 78 125-204 12-89 (103)
249 1uaw_A Mouse-musashi-1; RNP-ty 99.6 4.1E-16 1.4E-20 120.8 5.7 75 129-204 1-75 (77)
250 1x4b_A Heterogeneous nuclear r 99.6 1.4E-15 4.9E-20 127.6 9.5 79 125-204 24-102 (116)
251 3sde_A Paraspeckle component 1 99.6 1.5E-15 5.1E-20 145.8 10.6 111 4-118 70-180 (261)
252 2kvi_A Nuclear polyadenylated 99.6 1.1E-15 3.9E-20 123.9 8.2 80 26-120 6-86 (96)
253 2xnq_A Nuclear polyadenylated 99.6 2.8E-15 9.4E-20 122.0 10.4 78 25-117 17-95 (97)
254 2krb_A Eukaryotic translation 99.6 7.7E-16 2.6E-20 120.8 6.8 72 129-202 2-80 (81)
255 1wg5_A Heterogeneous nuclear r 99.6 2.5E-15 8.6E-20 123.8 10.1 78 126-205 13-91 (104)
256 2dgw_A Probable RNA-binding pr 99.6 2.5E-15 8.6E-20 120.4 9.9 76 127-205 9-84 (91)
257 3egn_A RNA-binding protein 40; 99.6 1.4E-15 4.8E-20 132.6 9.0 85 26-120 41-133 (143)
258 2ki2_A SS-DNA binding protein 99.6 3.2E-16 1.1E-20 125.3 4.5 78 129-207 2-79 (90)
259 1sjq_A Polypyrimidine tract-bi 99.6 9.4E-16 3.2E-20 126.2 7.4 72 127-204 15-88 (105)
260 1wf1_A RNA-binding protein RAL 99.6 1.9E-15 6.6E-20 125.6 9.4 76 29-119 26-102 (110)
261 1wel_A RNA-binding protein 12; 99.6 7.6E-16 2.6E-20 131.0 6.9 80 126-206 23-102 (124)
262 2hgm_A HNRPF protein, heteroge 99.6 7.4E-16 2.5E-20 131.4 6.7 80 27-116 39-120 (126)
263 2i2y_A Fusion protein consists 99.6 3.3E-15 1.1E-19 131.3 11.1 80 27-118 70-149 (150)
264 2nlw_A Eukaryotic translation 99.6 1.3E-15 4.6E-20 125.7 8.0 77 127-205 14-97 (105)
265 2j76_E EIF-4B, EIF4B, eukaryot 99.6 7.6E-16 2.6E-20 126.0 6.5 79 125-205 16-95 (100)
266 1wf1_A RNA-binding protein RAL 99.6 1.6E-15 5.4E-20 126.2 8.5 91 105-205 6-97 (110)
267 2cq2_A Hypothetical protein LO 99.6 1.9E-15 6.5E-20 126.2 8.8 84 27-119 22-108 (114)
268 3beg_B Splicing factor, argini 99.6 1.9E-15 6.5E-20 126.9 9.0 68 127-201 15-82 (115)
269 3d2w_A TAR DNA-binding protein 99.6 2.2E-15 7.6E-20 120.6 8.9 80 26-119 7-86 (89)
270 2fc8_A NCL protein; structure 99.6 5.3E-15 1.8E-19 121.1 11.3 78 125-205 12-89 (102)
271 2rs2_A Musashi-1, RNA-binding 99.6 1.6E-15 5.5E-20 126.1 8.3 78 126-204 23-100 (109)
272 2cqh_A IGF-II mRNA-binding pro 99.6 1.7E-15 5.9E-20 121.9 8.1 82 26-120 4-86 (93)
273 2cjk_A Nuclear polyadenylated 99.6 2.1E-15 7.2E-20 133.9 9.4 103 5-117 58-166 (167)
274 2cpi_A CCR4-NOT transcription 99.6 4.4E-15 1.5E-19 123.8 10.7 78 127-204 14-97 (111)
275 1x5o_A RNA binding motif, sing 99.6 6.1E-15 2.1E-19 123.3 11.6 71 126-197 23-93 (114)
276 3beg_B Splicing factor, argini 99.6 1.5E-15 5.3E-20 127.5 7.9 77 28-118 14-95 (115)
277 2cq1_A PTB-like protein L; RRM 99.6 6.2E-15 2.1E-19 120.9 11.3 74 126-205 13-88 (101)
278 2db1_A Heterogeneous nuclear r 99.6 1.7E-15 5.8E-20 127.8 8.1 77 127-205 16-95 (118)
279 2e5g_A U6 snRNA-specific termi 99.6 4.4E-15 1.5E-19 119.9 10.1 81 27-120 5-85 (94)
280 1wex_A Hypothetical protein (r 99.6 5.6E-15 1.9E-19 121.8 10.9 75 125-205 12-88 (104)
281 2cpd_A Apobec-1 stimulating pr 99.6 7E-15 2.4E-19 119.8 11.3 76 121-204 8-85 (99)
282 1wg1_A KIAA1579 protein, homol 99.6 1.9E-15 6.6E-20 120.5 7.7 76 28-117 3-78 (88)
283 2dnn_A RNA-binding protein 12; 99.6 2.3E-15 8E-20 125.2 8.4 75 127-204 15-89 (109)
284 1whx_A Hypothetical protein ri 99.6 2.2E-15 7.4E-20 125.8 8.2 76 29-117 9-84 (111)
285 2dnq_A RNA-binding protein 4B; 99.6 5.4E-15 1.8E-19 118.3 10.2 72 126-205 6-77 (90)
286 2cpy_A RNA-binding protein 12; 99.6 1.9E-15 6.6E-20 126.6 7.9 79 126-206 13-92 (114)
287 2err_A Ataxin-2-binding protei 99.6 1.9E-15 6.4E-20 125.7 7.7 80 124-205 25-104 (109)
288 2wbr_A GW182, gawky, LD47780P; 99.6 2.6E-15 8.9E-20 118.6 8.0 72 128-205 7-78 (89)
289 3zzy_A Polypyrimidine tract-bi 99.6 4.8E-15 1.6E-19 126.6 10.2 79 31-119 29-108 (130)
290 2cpx_A Hypothetical protein FL 99.6 1.2E-15 4E-20 127.8 6.2 81 126-206 23-103 (115)
291 2fc9_A NCL protein; structure 99.6 4.4E-15 1.5E-19 121.4 9.4 77 125-205 12-88 (101)
292 2hgl_A HNRPF protein, heteroge 99.6 1.8E-15 6E-20 131.0 7.3 118 75-204 1-121 (136)
293 3r27_A HnRNP L, heterogeneous 99.6 3E-15 1E-19 122.0 8.3 75 125-205 18-94 (100)
294 2lmi_A GRSF-1, G-rich sequence 99.6 1.1E-15 3.6E-20 126.7 5.3 83 27-116 8-91 (107)
295 2kvi_A Nuclear polyadenylated 99.6 5.9E-15 2E-19 119.6 9.5 74 126-207 8-82 (96)
296 2ad9_A Polypyrimidine tract-bi 99.6 5.5E-15 1.9E-19 124.6 9.4 74 126-205 29-104 (119)
297 2dnl_A Cytoplasmic polyadenyla 99.6 3.9E-15 1.3E-19 124.7 8.3 79 27-115 5-86 (114)
298 2jvr_A Nucleolar protein 3; RN 99.6 2.3E-15 8E-20 125.5 6.9 75 127-205 27-102 (111)
299 1x5p_A Negative elongation fac 99.6 1.3E-14 4.5E-19 117.7 10.9 79 27-120 12-90 (97)
300 1x4f_A Matrin 3; structural ge 99.6 6.9E-15 2.4E-19 122.6 9.1 76 125-206 22-100 (112)
301 1why_A Hypothetical protein ri 99.6 1E-14 3.6E-19 118.3 10.0 73 127-205 16-90 (97)
302 1x4g_A Nucleolysin TIAR; struc 99.6 8.4E-15 2.9E-19 121.5 9.5 74 126-205 23-96 (109)
303 1iqt_A AUF1, heterogeneous nuc 99.6 1.3E-15 4.4E-20 117.4 4.0 74 130-204 1-74 (75)
304 2dgt_A RNA-binding protein 30; 99.6 1.2E-14 4E-19 116.8 9.7 71 126-204 8-78 (92)
305 2e5i_A Heterogeneous nuclear r 99.6 1.8E-14 6E-19 122.4 11.2 77 32-119 27-104 (124)
306 2hvz_A Splicing factor, argini 99.6 5.9E-15 2E-19 120.6 7.9 72 129-205 1-72 (101)
307 1fje_B Nucleolin RBD12, protei 99.6 5.6E-15 1.9E-19 132.4 8.2 100 5-117 67-174 (175)
308 2j8a_A Histone-lysine N-methyl 99.6 7.1E-15 2.4E-19 123.8 8.2 78 31-115 3-94 (136)
309 2lcw_A RNA-binding protein FUS 99.3 3.2E-16 1.1E-20 131.7 0.0 80 126-205 5-92 (116)
310 2f3j_A RNA and export factor b 99.6 6.8E-15 2.3E-19 133.1 8.7 81 126-207 86-166 (177)
311 2lmi_A GRSF-1, G-rich sequence 99.6 3.1E-15 1.1E-19 123.9 6.0 78 126-205 9-89 (107)
312 2e5j_A Methenyltetrahydrofolat 99.6 1.2E-14 4.2E-19 117.9 9.4 75 126-205 17-91 (97)
313 2a3j_A U1 small nuclear ribonu 99.6 9.6E-15 3.3E-19 124.8 9.1 78 126-206 27-108 (127)
314 2cpj_A Non-POU domain-containi 99.6 1.2E-14 4.2E-19 118.3 9.3 75 125-205 12-86 (99)
315 2e5g_A U6 snRNA-specific termi 99.6 9.5E-15 3.3E-19 117.9 8.6 71 127-203 7-77 (94)
316 2pe8_A Splicing factor 45; RRM 99.6 1.9E-14 6.5E-19 118.9 10.5 83 28-116 6-93 (105)
317 2ytc_A PRE-mRNA-splicing facto 99.5 1.3E-14 4.3E-19 114.6 8.8 73 126-204 10-83 (85)
318 1wf0_A TDP-43, TAR DNA-binding 99.5 9.1E-15 3.1E-19 116.4 7.9 80 27-120 2-81 (88)
319 2dha_A FLJ20171 protein; RRM d 99.5 4.6E-15 1.6E-19 126.1 6.4 77 127-205 22-102 (123)
320 2hzc_A Splicing factor U2AF 65 99.5 9.6E-15 3.3E-19 115.7 7.8 73 27-113 3-86 (87)
321 2xs2_A Deleted in azoospermia- 99.5 8.2E-15 2.8E-19 120.0 7.6 78 127-207 8-85 (102)
322 2dnp_A RNA-binding protein 14; 99.5 1.7E-14 5.7E-19 115.4 8.9 72 126-205 7-78 (90)
323 2diu_A KIAA0430 protein; struc 99.5 3.7E-14 1.3E-18 113.1 10.4 75 29-120 7-87 (96)
324 2xnq_A Nuclear polyadenylated 99.5 2.6E-14 8.9E-19 116.2 9.8 73 125-205 19-92 (97)
325 2voo_A Lupus LA protein; RNA-b 99.5 2.2E-14 7.7E-19 131.5 10.5 79 30-117 109-187 (193)
326 1fj7_A Nucleolin RBD1, protein 99.5 1.2E-15 4.3E-20 124.7 1.8 77 127-205 16-92 (101)
327 3lqv_A PRE-mRNA branch site pr 99.5 3.1E-14 1E-18 119.2 10.1 77 127-206 7-83 (115)
328 2j8a_A Histone-lysine N-methyl 99.5 8.6E-15 3E-19 123.3 6.5 77 129-205 3-93 (136)
329 1whx_A Hypothetical protein ri 99.5 2.9E-14 1E-18 118.9 9.6 75 127-207 9-83 (111)
330 2hgm_A HNRPF protein, heteroge 99.5 1E-14 3.6E-19 124.3 6.9 77 126-205 40-118 (126)
331 3tyt_A Heterogeneous nuclear r 99.5 1.9E-14 6.6E-19 133.2 9.2 80 30-114 123-204 (205)
332 2jvo_A Nucleolar protein 3; nu 99.5 1.8E-14 6.2E-19 119.5 7.9 72 125-204 28-99 (108)
333 2voo_A Lupus LA protein; RNA-b 99.5 5.1E-14 1.8E-18 129.1 11.5 122 84-207 63-186 (193)
334 2cq2_A Hypothetical protein LO 99.5 1.6E-14 5.5E-19 120.6 7.4 63 127-195 24-88 (114)
335 1fjc_A Nucleolin RBD2, protein 99.5 1.2E-14 4.2E-19 117.5 6.3 74 126-204 14-87 (96)
336 2la4_A Nuclear and cytoplasmic 99.5 1.5E-14 5E-19 118.2 6.5 72 127-204 26-97 (101)
337 2e44_A Insulin-like growth fac 99.5 3.6E-14 1.2E-18 114.7 8.5 75 127-205 14-89 (96)
338 2cqh_A IGF-II mRNA-binding pro 99.5 1.9E-14 6.4E-19 115.8 6.6 72 127-205 7-80 (93)
339 1nu4_A U1A RNA binding domain; 99.5 1.4E-14 4.8E-19 117.3 5.6 76 127-205 7-86 (97)
340 1sjr_A Polypyrimidine tract-bi 99.5 9.3E-14 3.2E-18 123.1 11.2 75 127-205 45-121 (164)
341 2bz2_A Negative elongation fac 99.5 5.4E-14 1.9E-18 119.1 9.3 79 27-120 36-114 (121)
342 1wg1_A KIAA1579 protein, homol 99.5 3.5E-14 1.2E-18 113.1 7.1 72 127-205 4-75 (88)
343 2e5i_A Heterogeneous nuclear r 99.5 2E-13 6.7E-18 115.9 11.9 67 127-199 24-91 (124)
344 2adc_A Polypyrimidine tract-bi 99.5 1.2E-13 4E-18 129.9 11.6 102 4-117 84-228 (229)
345 1x5p_A Negative elongation fac 99.5 1.8E-13 6E-18 111.0 10.8 71 126-204 13-83 (97)
346 3d2w_A TAR DNA-binding protein 99.5 8.2E-14 2.8E-18 111.4 8.6 73 126-207 9-81 (89)
347 2dnl_A Cytoplasmic polyadenyla 99.5 3.3E-14 1.1E-18 119.1 6.2 70 127-199 7-79 (114)
348 1qm9_A Polypyrimidine tract-bi 99.5 1E-13 3.4E-18 126.9 9.9 76 30-117 120-197 (198)
349 2pe8_A Splicing factor 45; RRM 99.5 2.3E-13 8E-18 112.3 10.9 80 126-205 6-91 (105)
350 3zzy_A Polypyrimidine tract-bi 99.5 2.9E-13 9.9E-18 115.5 11.6 68 127-199 27-95 (130)
351 3egn_A RNA-binding protein 40; 99.5 1.4E-14 4.9E-19 126.1 3.5 81 126-206 43-128 (143)
352 2hzc_A Splicing factor U2AF 65 99.5 9.4E-14 3.2E-18 110.0 7.8 70 127-203 5-85 (87)
353 3u1l_A PRE-mRNA-splicing facto 99.5 1.2E-13 4.2E-18 130.1 9.5 82 28-118 132-230 (240)
354 3pgw_A U1-A; protein-RNA compl 99.4 2.9E-13 1E-17 130.8 11.3 76 29-115 206-281 (282)
355 2dit_A HIV TAT specific factor 99.4 5.3E-13 1.8E-17 111.3 11.3 83 26-119 11-104 (112)
356 2diu_A KIAA0430 protein; struc 99.4 3.1E-13 1E-17 107.8 8.7 71 127-207 7-83 (96)
357 1wf0_A TDP-43, TAR DNA-binding 99.4 3.3E-13 1.1E-17 107.3 7.7 71 127-206 4-74 (88)
358 2bz2_A Negative elongation fac 99.4 4.1E-13 1.4E-17 113.7 8.5 72 126-205 37-108 (121)
359 3u1l_A PRE-mRNA-splicing facto 99.4 6.5E-13 2.2E-17 125.1 9.3 78 125-208 131-229 (240)
360 3ue2_A Poly(U)-binding-splicin 99.4 1.8E-12 6E-17 109.2 9.7 81 29-115 19-107 (118)
361 1jmt_A Splicing factor U2AF 35 99.4 3.3E-13 1.1E-17 111.1 5.1 72 35-114 20-103 (104)
362 3v4m_A Splicing factor U2AF 65 99.4 1.2E-12 4.1E-17 108.0 8.0 82 29-116 4-96 (105)
363 2d9o_A DNAJ (HSP40) homolog, s 99.3 6.6E-12 2.3E-16 102.5 11.0 77 30-120 10-93 (100)
364 3v4m_A Splicing factor U2AF 65 99.3 2.5E-12 8.6E-17 106.0 8.6 79 127-205 4-94 (105)
365 3ue2_A Poly(U)-binding-splicin 99.3 3.5E-12 1.2E-16 107.4 9.5 79 127-205 19-106 (118)
366 3tht_A Alkylated DNA repair pr 99.3 2.2E-12 7.5E-17 127.9 9.3 79 27-115 15-97 (345)
367 2dit_A HIV TAT specific factor 99.3 8.1E-12 2.8E-16 104.0 11.0 76 126-205 13-99 (112)
368 1jmt_A Splicing factor U2AF 35 99.3 1.5E-12 5E-17 107.3 4.9 71 133-204 20-102 (104)
369 3tht_A Alkylated DNA repair pr 99.2 3.6E-11 1.2E-15 119.1 9.2 66 125-196 15-82 (345)
370 3s6e_A RNA-binding protein 39; 99.1 9.4E-11 3.2E-15 97.9 8.7 77 28-115 5-91 (114)
371 3s6e_A RNA-binding protein 39; 99.1 1.5E-10 5.3E-15 96.6 8.2 75 127-205 6-90 (114)
372 2d9o_A DNAJ (HSP40) homolog, s 99.1 4.7E-10 1.6E-14 91.4 10.6 61 137-204 26-86 (100)
373 1owx_A Lupus LA protein, SS-B, 99.0 6E-10 2E-14 93.5 8.1 74 125-204 15-92 (121)
374 1owx_A Lupus LA protein, SS-B, 99.0 2.8E-09 9.7E-14 89.4 9.9 77 26-113 14-92 (121)
375 3dxb_A Thioredoxin N-terminall 98.9 2.5E-08 8.7E-13 92.8 13.7 66 139-204 140-209 (222)
376 2dnr_A Synaptojanin-1; RRM dom 98.8 6.4E-09 2.2E-13 82.1 7.2 71 30-116 7-85 (91)
377 2dnr_A Synaptojanin-1; RRM dom 98.8 5.6E-09 1.9E-13 82.4 6.6 55 143-206 30-84 (91)
378 3dxb_A Thioredoxin N-terminall 98.7 5.1E-08 1.7E-12 90.7 11.6 80 30-115 124-211 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.7 1.5E-08 5E-13 80.4 4.5 70 127-205 14-92 (95)
380 1ufw_A Synaptojanin 2; RNP dom 98.6 3.1E-08 1E-12 78.6 5.1 70 29-114 14-92 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.3 1.6E-06 5.6E-11 70.1 8.4 72 28-112 19-95 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.2 2.2E-06 7.5E-11 69.3 7.1 70 128-203 21-95 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.2 9.1E-06 3.1E-10 65.2 10.1 92 27-141 5-99 (104)
384 1whv_A Poly(A)-specific ribonu 97.5 0.0002 6.7E-09 56.8 7.0 55 30-96 16-70 (100)
385 1uw4_A UPF3X; nonsense mediate 97.4 0.0013 4.5E-08 51.9 10.4 82 31-115 2-86 (91)
386 3ctr_A Poly(A)-specific ribonu 97.4 0.00014 4.9E-09 57.7 4.8 54 32-97 8-61 (101)
387 1wey_A Calcipressin 1; structu 97.2 0.00052 1.8E-08 55.2 5.9 72 128-205 5-81 (104)
388 1uw4_A UPF3X; nonsense mediate 97.1 0.0043 1.5E-07 48.9 10.5 70 129-198 2-73 (91)
389 1wey_A Calcipressin 1; structu 97.1 0.0012 4.2E-08 53.1 7.3 76 29-117 4-84 (104)
390 2dhx_A Poly (ADP-ribose) polym 96.9 0.0041 1.4E-07 49.8 8.8 67 127-202 7-78 (104)
391 1whv_A Poly(A)-specific ribonu 96.9 0.002 6.8E-08 51.0 6.7 56 127-191 15-70 (100)
392 1wwh_A Nucleoporin 35, nucleop 96.5 0.0066 2.3E-07 50.1 6.9 72 18-100 12-83 (119)
393 3ctr_A Poly(A)-specific ribonu 96.4 0.0039 1.3E-07 49.5 5.0 55 128-191 6-60 (101)
394 2l08_A Regulator of nonsense t 96.2 0.0085 2.9E-07 47.6 5.9 82 30-114 9-93 (97)
395 1wwh_A Nucleoporin 35, nucleop 96.1 0.024 8.2E-07 46.7 8.3 65 127-199 23-87 (119)
396 3pq1_A Poly(A) RNA polymerase; 95.7 0.0066 2.3E-07 62.0 4.0 59 27-94 50-108 (464)
397 2l08_A Regulator of nonsense t 95.6 0.024 8.2E-07 45.0 6.1 71 128-198 9-81 (97)
398 3pq1_A Poly(A) RNA polymerase; 94.2 0.025 8.6E-07 57.7 3.5 56 127-188 52-107 (464)
399 3d45_A Poly(A)-specific ribonu 92.0 0.27 9.3E-06 50.9 7.5 57 30-98 440-496 (507)
400 3p3d_A Nucleoporin 53; structu 90.1 0.3 1E-05 40.8 4.3 72 129-202 8-93 (132)
401 3p3d_A Nucleoporin 53; structu 88.5 1.1 3.9E-05 37.3 6.8 68 29-100 6-86 (132)
402 3d45_A Poly(A)-specific ribonu 81.7 2.7 9.2E-05 43.4 7.4 57 128-193 440-496 (507)
403 4eyt_A Telomerase associated p 68.7 37 0.0013 26.0 9.2 67 29-112 11-77 (129)
404 3j21_T 50S ribosomal protein L 66.4 15 0.00052 28.1 6.3 56 34-94 26-82 (86)
405 3lpe_A Putative transcription 64.2 22 0.00077 27.3 7.0 61 28-96 7-71 (92)
406 2g0c_A ATP-dependent RNA helic 60.6 18 0.00063 26.4 5.7 69 32-114 2-74 (76)
407 2cu1_A Mitogen-activated prote 55.2 20 0.00068 28.1 5.1 65 37-117 23-88 (103)
408 3u5e_X 60S ribosomal protein L 50.5 30 0.001 29.0 5.9 53 37-94 85-138 (142)
409 4a17_R RPL23A, 60S ribosomal p 49.5 31 0.001 29.2 5.8 53 37-94 93-146 (150)
410 1vq8_S 50S ribosomal protein L 48.4 29 0.001 26.4 5.1 54 34-92 25-79 (85)
411 3fry_A Probable copper-exporti 46.6 50 0.0017 23.2 6.1 54 129-189 7-60 (73)
412 2jrh_A Mitogen-activated prote 45.9 89 0.003 23.9 7.2 64 37-116 19-83 (94)
413 4e8u_A Putative uncharacterize 44.9 40 0.0014 29.2 6.0 48 32-85 14-72 (172)
414 2npt_B Mitogen-activated prote 44.5 93 0.0032 24.1 7.2 55 35-100 33-88 (100)
415 2g0c_A ATP-dependent RNA helic 43.1 63 0.0021 23.3 6.2 58 138-204 11-73 (76)
416 3iz5_X 60S ribosomal protein L 42.7 31 0.0011 29.2 4.8 52 37-93 95-147 (152)
417 2kpo_A Rossmann 2X2 fold prote 40.9 27 0.00091 26.1 3.6 44 42-100 33-76 (110)
418 2c60_A Human mitogen-activated 39.8 79 0.0027 24.8 6.3 60 37-112 46-106 (111)
419 2zkr_s 60S ribosomal protein L 36.5 66 0.0023 27.4 5.9 55 35-94 97-152 (156)
420 3fut_A Dimethyladenosine trans 35.7 35 0.0012 31.8 4.6 34 30-66 110-143 (271)
421 3fry_A Probable copper-exporti 33.6 1.2E+02 0.004 21.1 6.4 55 30-94 6-60 (73)
422 1xn9_A 30S ribosomal protein S 32.8 1.4E+02 0.0046 23.4 6.8 53 40-93 28-82 (101)
423 4eyt_A Telomerase associated p 31.8 1.7E+02 0.0058 22.3 7.8 58 127-192 11-68 (129)
424 3dxs_X Copper-transporting ATP 31.4 1.3E+02 0.0044 20.7 7.5 55 129-189 4-62 (74)
425 2hiy_A Hypothetical protein; C 31.2 2.2E+02 0.0076 24.6 8.8 123 32-178 8-144 (183)
426 2inr_A DNA topoisomerase 4 sub 31.0 56 0.0019 33.4 5.4 64 30-98 275-342 (514)
427 2v94_A RPS24, 30S ribosomal pr 30.5 1.5E+02 0.0051 23.5 6.8 51 40-91 37-89 (107)
428 1ywx_A 30S ribosomal protein S 30.2 1.4E+02 0.0048 23.4 6.5 51 40-91 28-80 (102)
429 4a4j_A Pacszia, cation-transpo 29.0 94 0.0032 21.1 5.0 55 129-189 4-61 (69)
430 2lfv_A Protein DAMX; cell divi 34.6 12 0.00041 29.8 0.0 60 34-98 26-87 (106)
431 3ts2_A Protein LIN-28 homolog 26.7 15 0.0005 31.2 0.2 28 143-178 2-29 (148)
432 4hhu_A OR280; engineered prote 26.7 2.5E+02 0.0085 22.5 7.7 89 83-190 11-104 (170)
433 1q4r_A Protein AT3G17210; cent 26.7 1.6E+02 0.0054 22.9 6.5 60 33-92 14-81 (112)
434 3ts2_A Protein LIN-28 homolog 25.2 14 0.00047 31.3 -0.2 28 45-83 2-29 (148)
435 3bb5_A Stress responsive alpha 25.2 1.7E+02 0.0058 23.3 6.5 61 32-92 23-91 (121)
436 3lfj_A Manxb, phosphotransfera 24.1 1.1E+02 0.0039 26.7 5.5 30 76-113 98-127 (187)
437 4e8u_A Putative uncharacterize 23.6 1.7E+02 0.0058 25.3 6.4 56 129-187 13-80 (172)
438 1wvf_A 4-cresol dehydrogenase 23.4 44 0.0015 34.2 3.1 43 46-92 217-261 (520)
439 3h7h_B Transcription elongatio 23.2 1.7E+02 0.0059 23.0 6.0 32 59-96 41-72 (106)
440 2gu3_A YPMB protein; APC1927, 23.2 80 0.0027 26.1 4.2 66 19-84 51-127 (136)
441 3u5c_Y RP50, 40S ribosomal pro 22.9 2.1E+02 0.0073 23.6 6.6 51 40-91 33-85 (135)
442 2xzm_P RPS24E; ribosome, trans 22.6 2.3E+02 0.0077 23.8 6.7 51 40-91 31-83 (149)
443 1tr0_A Stable protein 1; plant 21.7 1.8E+02 0.0062 22.3 5.9 59 33-91 12-80 (108)
444 2xmw_A PACS-N, cation-transpor 21.6 1.8E+02 0.0062 19.1 7.2 56 129-190 5-63 (71)
445 2hh3_A KH-type splicing regula 21.3 61 0.0021 25.5 2.9 18 175-192 59-76 (106)
446 1yg0_A COP associated protein; 20.8 1.8E+02 0.0061 18.8 6.8 55 130-190 4-61 (66)
447 3tqs_A Ribosomal RNA small sub 20.4 63 0.0022 29.6 3.3 33 32-66 98-130 (255)
448 3uzu_A Ribosomal RNA small sub 20.0 54 0.0019 30.6 2.7 35 30-66 114-148 (279)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=7.9e-34 Score=265.59 Aligned_cols=168 Identities=21% Similarity=0.345 Sum_probs=148.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
++...++|||+|||+++|+++|+++|++||+ |++|+|++|+. +++++|||||+|.+.++|++||+.+++..+ .
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~--I~~v~i~~d~~-tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~----~ 83 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGP--ILSIRVCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVI----K 83 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHHTTCEE----T
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCC--EEEEEEecccC-CCCccccccceeCCHHHHHHHHHHhhhhhc----C
Confidence 4556789999999999999999999999999 99999999876 899999999999999999999999999877 5
Q ss_pred CceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 013047 106 ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 185 (450)
Q Consensus 106 gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~ 185 (450)
++.|++.++..... ......++|||+||++++|+++|+++|++||.|+.|.|+.+. +.++|||||+|++.++|++
T Consensus 84 g~~i~~~~~~~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~ 158 (213)
T 4f02_A 84 GKPVRIMWSQRDPS---LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAER 158 (213)
T ss_dssp TEECEEEECCCCTH---HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHH
T ss_pred Cccccccccccccc---ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHH
Confidence 89999998865432 222345789999999999999999999999999999999985 4479999999999999999
Q ss_pred HHHHhCCCeecCCeeEEEEE
Q 013047 186 CINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 186 Ai~~l~g~~~~g~~i~v~v~ 205 (450)
||++|||..|.|+.|.|.+.
T Consensus 159 Ai~~lng~~~~g~~i~V~~a 178 (213)
T 4f02_A 159 AIEKMNGMLLNDRKVFVGRF 178 (213)
T ss_dssp HHHHHTTCEETTEECEEEEC
T ss_pred HHHHhCCCEECCEEEEEEEc
Confidence 99999999999998766553
No 2
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=3.7e-33 Score=248.91 Aligned_cols=165 Identities=22% Similarity=0.383 Sum_probs=151.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceE
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 109 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i 109 (450)
+++|||+|||.++|+++|+++|++||. |.+|+|+.++. +++++|||||+|.+.++|++|++.|++..+ .++.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~--i~~v~~~~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~----~g~~l 74 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGE--IESCKLVRDKI-TGQSLGYGFVNYIDPKDAEKAINTLNGLRL----QTKTI 74 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSC--EEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHHTTCEE----TTEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCC--eEEEEEEeCCC-CCcceeEEEEEECCHHHHHHHHHHcCCCcc----CCceE
Confidence 689999999999999999999999999 99999999875 899999999999999999999999999877 58999
Q ss_pred EEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 013047 110 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 189 (450)
Q Consensus 110 ~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~ 189 (450)
+|.++.+... ....++|||+|||..+++++|+++|++||.|+.|.|+.+..++.++++|||+|++.++|++|++.
T Consensus 75 ~v~~~~~~~~-----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 149 (167)
T 1fxl_A 75 KVSYARPSSA-----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 149 (167)
T ss_dssp EEEECCCCCG-----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEecCCCcc-----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHH
Confidence 9999976543 23557899999999999999999999999999999999988999999999999999999999999
Q ss_pred hCCCeecCCeeEEEEEE
Q 013047 190 INNKEFSDGNSKVKLRA 206 (450)
Q Consensus 190 l~g~~~~g~~i~v~v~~ 206 (450)
||+..|.++.+.|.|+.
T Consensus 150 l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 150 LNGQKPSGATEPITVKF 166 (167)
T ss_dssp HTTCCCTTCSSCCEEEE
T ss_pred hcCCccCCCccceEEEe
Confidence 99999999876666553
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-33 Score=247.45 Aligned_cols=163 Identities=19% Similarity=0.383 Sum_probs=149.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEE
Q 013047 31 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 110 (450)
Q Consensus 31 ~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~ 110 (450)
++|||+|||.++|+++|+++|++||. |.+|+|+.++ ++.++|||||+|.+.++|++|++.|++..+ .++.|+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~--i~~v~i~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~----~g~~i~ 72 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGP--IANIKIMIDK--NNKNVNYAFVEYHQSHDANIALQTLNGKQI----ENNIVK 72 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSC--EEEEEEECCC--C-CCEEEEEEEESSHHHHHHHHHHHTTCEE----TTEECE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCC--eEEEEEEECC--CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc----CCCeeE
Confidence 58999999999999999999999999 9999999986 578999999999999999999999999987 589999
Q ss_pred EeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 013047 111 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 190 (450)
Q Consensus 111 v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l 190 (450)
|.++....... .....+|||+|||..+++++|+++|++||.|+.|.|+.+..++.++|+|||+|++.++|++|++.|
T Consensus 73 v~~~~~~~~~~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 149 (166)
T 3md3_A 73 INWAFQSQQSS---SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 149 (166)
T ss_dssp EEECCCCCCCC---CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred EEEcCCCCCCC---CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Confidence 99997665432 335679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeecCCeeEEEE
Q 013047 191 NNKEFSDGNSKVKL 204 (450)
Q Consensus 191 ~g~~~~g~~i~v~v 204 (450)
|+..|.|+.|+|.+
T Consensus 150 ~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 150 QGQDLNGRPLRINW 163 (166)
T ss_dssp TTCEETTEECEEEE
T ss_pred CCCccCCcEEEEEe
Confidence 99999998877765
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=4.1e-33 Score=255.83 Aligned_cols=171 Identities=22% Similarity=0.409 Sum_probs=146.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
...+.++|||+|||+++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++||+. ++..+ .
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~-~~~~~----~ 80 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPN-TKRSRGFGFVTYATVEEVDAAMNA-RPHKV----D 80 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHT-CSCEE----T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCC--EEEEEEEEcCC-CCCccceEEEEeCCHHHHHHHHhc-CCCEE----C
Confidence 3446789999999999999999999999999 99999999876 899999999999999999999976 66655 5
Q ss_pred CceEEEeecCCCCCCC-ccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 013047 106 ERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 184 (450)
Q Consensus 106 gr~i~v~~a~~~~~~~-~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~ 184 (450)
++.|.|.++....... .......++|||+|||+++|+++|+++|++||.|+.|.|+.+..++.++|||||+|++.++|+
T Consensus 81 g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 160 (196)
T 1l3k_A 81 GRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160 (196)
T ss_dssp TEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHH
Confidence 8999999987654432 223345689999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHhCCCeecCCeeEEEEE
Q 013047 185 ACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 185 ~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
+||+. ++..|.|+.|.|.+.
T Consensus 161 ~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 161 KIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp HHHHC-SCCEETTEECEEEEC
T ss_pred HHHHh-CCcEECCEEEEEEec
Confidence 99975 899999987665553
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1e-32 Score=246.73 Aligned_cols=163 Identities=23% Similarity=0.402 Sum_probs=149.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
.+++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++|++.|++..+ .++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~----~g~~ 74 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGP--INTCRIMRDYK-TGYSYGYAFVDFTSEMDSQRAIKVLNGITV----RNKR 74 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSC--EEEEECCEETT-TTEECSEEEEEESSHHHHHHHHHHHTTCEE----TTEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEEEeCC-CCccceEEEEEECCHHHHHHHHHhcCCCEe----CCcE
Confidence 4689999999999999999999999999 99999999865 899999999999999999999999999877 5899
Q ss_pred EEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 013047 109 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188 (450)
Q Consensus 109 i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~ 188 (450)
|+|.++.+.... ...++|||+|||..+++++|+++|++||.|+.|.|+.+..++.++|+|||+|++.++|.+|++
T Consensus 75 l~v~~~~~~~~~-----~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 75 LKVSYARPGGES-----IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp CEEEECCCCSST-----TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred EEEEecCCCccc-----CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH
Confidence 999999866542 345799999999999999999999999999999999998899999999999999999999999
Q ss_pred HhCCCeecC--CeeEEE
Q 013047 189 AINNKEFSD--GNSKVK 203 (450)
Q Consensus 189 ~l~g~~~~g--~~i~v~ 203 (450)
.||+..|.+ +.|+|.
T Consensus 150 ~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 150 ALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp HHTTCCCTTCSSCCEEE
T ss_pred HhcCCEecCCCeEEEEE
Confidence 999999988 555544
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=6.2e-33 Score=258.49 Aligned_cols=171 Identities=20% Similarity=0.396 Sum_probs=150.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
..++|||+|||.++|+++|+++|++||. |++|+|++++. ++.++|||||+|.+.++|++||+.|++..+ .++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~--i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~----~g~~ 99 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGP--IKSIDMSWDSV-TMKHKGFAFVEYEVPEAAQLALEQMNSVML----GGRN 99 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSC--EEEEEECCC-C-C-CCCSEEEEEESSHHHHHHHHHHHSSCCC----C-CC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCC--EEEEEEeecCC-CCccCceEEEEeCCHHHHHHHHHHccCCee----CCee
Confidence 3689999999999999999999999999 99999999875 889999999999999999999999999877 5899
Q ss_pred EEEeecCCCCCCCc------cccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHH
Q 013047 109 VKVAFAEPLREPDP------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA 182 (450)
Q Consensus 109 i~v~~a~~~~~~~~------~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~ 182 (450)
|+|.++........ ......++|||+||+.++++++|+++|++||.|+.|.|+.+..+++++++|||+|++.++
T Consensus 100 l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~ 179 (216)
T 2qfj_A 100 IKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQS 179 (216)
T ss_dssp CEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred EEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHH
Confidence 99998765543221 123456899999999999999999999999999999999999899999999999999999
Q ss_pred HHHHHHHhCCCeecCCeeEEEEEE
Q 013047 183 AVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 183 A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
|++||++||+..|.++.|.|.+..
T Consensus 180 A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 180 SQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp HHHHHHHHTTCBCSSSBCEEEECS
T ss_pred HHHHHHHccCCEeCCcEEEEEEec
Confidence 999999999999999987766543
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=7.1e-32 Score=242.64 Aligned_cols=167 Identities=23% Similarity=0.421 Sum_probs=147.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCC--CeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEG--LSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg--~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
++++|||+|||+++|+++|+++|++||+ |++|+|++++. ++ .++|||||+|.+.++|++|++.|++..+..+ ..
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~-~~ 77 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGA--VYEINVLRDRS-QNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG-MH 77 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSC--EEEEEEEEECS-SSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT-CS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCC--EEEEEEEecCC-CCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccC-Cc
Confidence 5789999999999999999999999999 99999999875 55 8999999999999999999999999877433 47
Q ss_pred ceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 013047 107 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 186 (450)
Q Consensus 107 r~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~A 186 (450)
+.+.+.++...... ....++|||+|||+.+|+++|+++|++||.|+.|.|+.+. +++++|||||+|++.++|++|
T Consensus 78 ~~~~~~~~~~~~~~----~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A 152 (175)
T 3nmr_A 78 HPIQMKPADSEKNN----AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTA 152 (175)
T ss_dssp SCCEEEECGGGCCS----CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHH
T ss_pred cceEEccccccccc----cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHH
Confidence 88888887655443 2256799999999999999999999999999999999985 588999999999999999999
Q ss_pred HHHhCCCeecC---CeeEEEE
Q 013047 187 INAINNKEFSD---GNSKVKL 204 (450)
Q Consensus 187 i~~l~g~~~~g---~~i~v~v 204 (450)
+++||+..+.+ +.|.|.+
T Consensus 153 ~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 153 IKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp HHHHTTSCCCTTCSSCCEEEE
T ss_pred HHHhcCCcccCCCCCCeEEEe
Confidence 99999998874 6665544
No 8
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=2.6e-31 Score=258.63 Aligned_cols=192 Identities=16% Similarity=0.238 Sum_probs=173.4
Q ss_pred hHHHHHhhCCCcccCCcccccCCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeC
Q 013047 4 LFLIYILIFPLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 83 (450)
Q Consensus 4 ~~~~~le~~~~~~~~~k~~~~~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~ 83 (450)
-...+|+.+....+.++.+.+.+....++|||+|||.++|+++|+++|++||. |.+|+|+.+.. ++.++|||||+|.
T Consensus 69 ~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~--i~~~~i~~~~~-~g~~~g~afV~f~ 145 (284)
T 3smz_A 69 QAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGS--LERCFLVYSER-TGQSKGYGFAEYM 145 (284)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECTT-TCCEEEEEEEEES
T ss_pred HHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCC--eeEEEEEeeCC-CCccceEEEEEEC
Confidence 35677888888999999999999999999999999999999999999999999 99999999875 8999999999999
Q ss_pred CHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCCCCccccCCccEEEEcCCCCCc-hhHHHHHhhhccCceEEEEEEe
Q 013047 84 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHW-KENQIRDQIKGYGDVIRIVLAR 162 (450)
Q Consensus 84 ~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~-te~dL~~~F~~~G~v~~v~i~~ 162 (450)
+.++|++|++.|++..+ .++.|.|.++.++..... ....++|||+|||+.+ ++++|+++|++||.|+.|.|+.
T Consensus 146 ~~~~a~~A~~~l~~~~~----~g~~i~v~~a~~~~~~~~--~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~ 219 (284)
T 3smz_A 146 KKDSAARAKSDLLGKPL----GPRTLYVHWTDAGQLTPA--LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLAC 219 (284)
T ss_dssp SHHHHHHHHHHHTTCEE----TTEECEEEECCGGGCCTT--TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEE
T ss_pred CHHHHHHHHHHhCCCEe----CCcEEEEEECCCCCCCcc--cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEE
Confidence 99999999999999877 589999999977654322 2356899999999995 9999999999999999999999
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 163 NMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 163 d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
+. ++.++|+|||+|++.++|.+|+++||+..|.|+.|.|.+.
T Consensus 220 ~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 261 (284)
T 3smz_A 220 GQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFC 261 (284)
T ss_dssp CS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEe
Confidence 86 7889999999999999999999999999999987666554
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=8.7e-32 Score=240.62 Aligned_cols=161 Identities=19% Similarity=0.387 Sum_probs=143.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
++++|||+|||.++|+++|+++|++||. |.+|+|++++. ++.++|||||+|.+.++|++|++. ...+ .++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~--~~~~----~g~~ 72 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGT--VTDLKIMKDPA-TGRSRGFGFLSFEKPSSVDEVVKT--QHIL----DGKV 72 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCC--EEEEECCCCTT-TSSCCSCEEEEESSTHHHHHHHHS--CCEE----TTEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCC--EEEEEEEECCC-CCCccceEEEEEccHHHHHHHHhc--cccc----CCeE
Confidence 4689999999999999999999999999 99999999865 899999999999999999999985 2333 4788
Q ss_pred EEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 013047 109 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188 (450)
Q Consensus 109 i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~ 188 (450)
|.|.++.++. ......+|||+|||.++++++|+++|++||.|+.|.|+.+..++.++|+|||+|++.++|++|++
T Consensus 73 i~v~~~~~~~-----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 73 IDPKRAIPRD-----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp CCCEECCCHH-----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH
T ss_pred cccccccchh-----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh
Confidence 8888876432 22345799999999999999999999999999999999998899999999999999999999997
Q ss_pred HhCCCeecCCeeEEEE
Q 013047 189 AINNKEFSDGNSKVKL 204 (450)
Q Consensus 189 ~l~g~~~~g~~i~v~v 204 (450)
|++..|.|+.|+|.+
T Consensus 148 -~~~~~~~g~~i~V~~ 162 (167)
T 2cjk_A 148 -NKFIDFKDRKIEIKR 162 (167)
T ss_dssp -CSEECSSSSCEEEEE
T ss_pred -CCCEEeCCeEEEEee
Confidence 899999999866654
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=1.9e-30 Score=233.09 Aligned_cols=157 Identities=19% Similarity=0.344 Sum_probs=140.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhc----C-------CCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDY----G-------VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 97 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~----G-------~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~ 97 (450)
++++|||+|||.++|+++|+++|++| | . |.++++.. ++|||||+|.+.++|++|+ .|++
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~--v~~~~~~~-------~~g~afV~f~~~~~A~~A~-~~~~ 72 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNP--VLAVQINQ-------DKNFAFLEFRSVDETTQAM-AFDG 72 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCS--EEEEEEET-------TTTEEEEEESSHHHHHHHG-GGTT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCc--eeeeEecC-------CCCEEEEEeCCHHHHHHHH-HhCC
Confidence 46899999999999999999999999 6 5 77777664 3699999999999999999 8999
Q ss_pred CCcccCCCCceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEe
Q 013047 98 PDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 177 (450)
Q Consensus 98 ~~~~~g~~gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F 177 (450)
..+ .++.|+|.++...... ...++|||+|||+++++++|+++|++||.|+.|.|+.++.++.++|+|||+|
T Consensus 73 ~~~----~g~~i~v~~~~~~~~~-----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f 143 (172)
T 2g4b_A 73 IIF----QGQSLKIRRPHDYQPL-----PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 143 (172)
T ss_dssp CEE----TTEECEEECCSSCCCC-----TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEE
T ss_pred cEe----cCceeeecCCcccCCC-----CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEe
Confidence 887 5899999988654432 2468999999999999999999999999999999999988999999999999
Q ss_pred CCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 178 STHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 178 ~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
++.++|++|+++||+..|.|+.|.|.+
T Consensus 144 ~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 144 VDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp SSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 999999999999999999998877654
No 11
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.3e-30 Score=254.66 Aligned_cols=189 Identities=19% Similarity=0.273 Sum_probs=158.2
Q ss_pred HHHHHhhCCCcccCCcccccCCCCCCCeEEEcCCCCCCcHHHHHHHHhhcC-CCCeeEEEEEeCCCCCCCeeeEEEEEeC
Q 013047 5 FLIYILIFPLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG-VEGVENINLVSDIQHEGLSRGFAFVMFS 83 (450)
Q Consensus 5 ~~~~le~~~~~~~~~k~~~~~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G-~~~V~~i~l~~d~~~tg~skG~aFVeF~ 83 (450)
...+|+ +....+.++.+.+.+. ..++|||+|||.++|+++|+++|++|| . |++|+|+.+. .+.++|||||+|.
T Consensus 94 A~~A~~-~~~~~~~g~~i~v~~~-~~~~l~v~nlp~~~t~~~l~~~f~~~G~~--i~~v~i~~~~--~~~~~g~afV~f~ 167 (292)
T 2ghp_A 94 ALAAIT-KTHKVVGQNEIIVSHL-TECTLWMTNFPPSYTQRNIRDLLQDINVV--ALSIRLPSLR--FNTSRRFAYIDVT 167 (292)
T ss_dssp HHHHHT-TTTCEETTEECEEEEC-CSCEEEEECCCTTCCHHHHHHHHHHTTCC--CCEEECC---------CCEEEEECS
T ss_pred HHHHHH-hCCcEeCCcEEEEEEC-CCCEEEEECCCCCCCHHHHHHHHHHhCCC--eEEEEEEeCC--CCCcceEEEEEEC
Confidence 455664 7888899999998766 588999999999999999999999999 8 9999999886 4789999999999
Q ss_pred CHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCCCCcc--ccCCccEEEEcCCCCC-chhHHHHHhhhccCceEEEEE
Q 013047 84 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE--IMAHVKTVFLDGVPPH-WKENQIRDQIKGYGDVIRIVL 160 (450)
Q Consensus 84 ~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~~~~~--~~~~~~~lfV~nLp~~-~te~dL~~~F~~~G~v~~v~i 160 (450)
+.++|++|++.|++..+ .++.|.|.++.+....... .....++|||+|||+. +++++|+++|++||.|+.|.|
T Consensus 168 ~~~~a~~A~~~l~g~~~----~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i 243 (292)
T 2ghp_A 168 SKEDARYCVEKLNGLKI----EGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINI 243 (292)
T ss_dssp SHHHHHHHHHHHTTCEE----TTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEEC
T ss_pred CHHHHHHHHHHhCCCEe----CCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEE
Confidence 99999999999999887 5899999999876654332 3456789999999999 999999999999999999999
Q ss_pred EecCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 161 ARNMS-TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 161 ~~d~~-~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
+.+.. |+.++|||||+|.+.++|.+|| +||+..|.|+.|.|.+
T Consensus 244 ~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~ 287 (292)
T 2ghp_A 244 PAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSL 287 (292)
T ss_dssp CSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEE
T ss_pred EecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEE
Confidence 99876 5899999999999999999999 9999999998765554
No 12
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=1.4e-30 Score=242.42 Aligned_cols=157 Identities=14% Similarity=0.174 Sum_probs=136.1
Q ss_pred CCCeEEEcCCC-CCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 29 DNDTLFVGNIC-NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 29 ~~~~lyV~nLp-~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
++++|||+||+ +++|+++|+++|++||. |++|+|+++. +|||||+|.+.++|++||+.||+..+ .++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~--v~~v~i~~~~------~g~afV~f~~~~~A~~Ai~~lng~~~----~g~ 70 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGN--VEKVKFMKSK------PGAAMVEMADGYAVDRAITHLNNNFM----FGQ 70 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSC--EEEEEECTTS------TTCEEEEESSHHHHHHHHHHHTTCEE----TTE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCC--eEEEEEecCC------CCEEEEEECCHHHHHHHHHHhCCCEE----CCc
Confidence 47899999999 89999999999999999 9999998763 59999999999999999999999988 589
Q ss_pred eEEEeecCCCCCCC----------c----------------------cccCCccEEEEcCCCCCchhHHHHHhhhccCce
Q 013047 108 TVKVAFAEPLREPD----------P----------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDV 155 (450)
Q Consensus 108 ~i~v~~a~~~~~~~----------~----------------------~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v 155 (450)
.|+|.++..+.... . ....+.++|||+|||+++||++|+++|++||.|
T Consensus 71 ~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v 150 (205)
T 3tyt_A 71 KMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVK 150 (205)
T ss_dssp ECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred eEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCc
Confidence 99999986432100 0 001235689999999999999999999999998
Q ss_pred --EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCe
Q 013047 156 --IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 199 (450)
Q Consensus 156 --~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~ 199 (450)
+.|.|+.+. +.++++|||+|++.++|.+||+.||+.+|.+..
T Consensus 151 ~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 151 RPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred ceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 889888764 456799999999999999999999999998875
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1.2e-29 Score=246.66 Aligned_cols=165 Identities=18% Similarity=0.283 Sum_probs=143.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHH----HHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcc
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIK----QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVV 101 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~----~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~ 101 (450)
....+++|||+|||+++|+++|+ ++|++||. |++|+|++ +++++|||||+|.+.++|++||+.||+..+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~--i~~v~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~- 77 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQ--ILDILVSR----SLKMRGQAFVIFKEVSSATNALRSMQGFPF- 77 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCC--eEEEEEcC----CCCcceEEEEEECCHHHHHHHHHHhcCCee-
Confidence 34568999999999999999976 99999999 99999986 678999999999999999999999999877
Q ss_pred cCCCCceEEEeecCCCCCCC------------------------------------------------------------
Q 013047 102 FGHPERTVKVAFAEPLREPD------------------------------------------------------------ 121 (450)
Q Consensus 102 ~g~~gr~i~v~~a~~~~~~~------------------------------------------------------------ 121 (450)
.++.|+|.++..+....
T Consensus 78 ---~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (282)
T 3pgw_A 78 ---YDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIM 154 (282)
T ss_pred ---CCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCccccccccc
Confidence 58999999986544200
Q ss_pred ----------------------------------------------ccccCCccEEEEcCCCCCchhHHHHHhhhccCce
Q 013047 122 ----------------------------------------------PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDV 155 (450)
Q Consensus 122 ----------------------------------------------~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v 155 (450)
.......++|||+||+..+++++|+++|++||.|
T Consensus 155 ~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i 234 (282)
T 3pgw_A 155 HHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGF 234 (282)
T ss_pred ccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCe
Confidence 0111245789999999999999999999999999
Q ss_pred EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeec-CCeeEEEEE
Q 013047 156 IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS-DGNSKVKLR 205 (450)
Q Consensus 156 ~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~-g~~i~v~v~ 205 (450)
+.|.|+.++ +|+|||+|++.++|++||+.||+..|. ++.|+|.+.
T Consensus 235 ~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 235 KEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred EEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 999998652 689999999999999999999999999 888777664
No 14
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=6.8e-30 Score=234.68 Aligned_cols=162 Identities=19% Similarity=0.316 Sum_probs=139.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhc----C-------CCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDY----G-------VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 97 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~----G-------~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~ 97 (450)
.+++|||+|||+++|+++|+++|++| | . |.++++. .++|||||+|.+.++|++|| .||+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~--v~~~~~~-------~~~g~afV~F~~~~~A~~Al-~l~g 72 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNP--VLAVQIN-------QDKNFAFLEFRSVDETTQAM-AFDG 72 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCS--EEEEEEE-------TTTTEEEEEESCSHHHHHHG-GGTT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCc--eEEeEec-------CCCCEEEEEeCCHHHHHHHH-HhcC
Confidence 47899999999999999999999999 4 4 5665554 35699999999999999999 8999
Q ss_pred CCcccCCCCceEEEeecCCCCCCCc---------------cccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEe
Q 013047 98 PDVVFGHPERTVKVAFAEPLREPDP---------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLAR 162 (450)
Q Consensus 98 ~~~~~g~~gr~i~v~~a~~~~~~~~---------------~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~ 162 (450)
..+ .++.|+|.++........ ......++|||+|||+.+++++|+++|++||.|+.|.|+.
T Consensus 73 ~~~----~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~ 148 (198)
T 2yh0_A 73 IIF----QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVK 148 (198)
T ss_dssp EEE----TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEE
T ss_pred CEE----cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEee
Confidence 877 589999999876532211 1123568999999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 163 NMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 163 d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
+..++.++|||||+|++.++|++|++.||+..|.++.|.|.+
T Consensus 149 ~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 149 DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp CTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 988999999999999999999999999999999998766554
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=8.7e-31 Score=236.27 Aligned_cols=164 Identities=16% Similarity=0.253 Sum_probs=140.0
Q ss_pred cCCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccC
Q 013047 24 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 103 (450)
Q Consensus 24 ~~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g 103 (450)
.....+.++|||+|||.++|+++|+++|++||. |..+. +.+.. ++.++|||||+|.+.++|++|| +|++..+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~--~~~~~-~~~~~-~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--- 78 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFA--KNDLA-VVDVR-TGTNRKFGYVDFESAEDLEKAL-ELTGLKV--- 78 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHH--HHTCC-CCEEE-EETTTTEEEEEESSHHHHHHHH-HGGGEEE---
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCC--cceEE-EEECC-CCccccEEEEEECCHHHHHHHH-hcCCCEe---
Confidence 345567899999999999999999999999997 76633 33322 7889999999999999999999 5999877
Q ss_pred CCCceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHH
Q 013047 104 HPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183 (450)
Q Consensus 104 ~~gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A 183 (450)
.++.|+|.++.++.... ....++|||+|||..+++++|+++|++||.|..+ ..++.++|+|||+|++.++|
T Consensus 79 -~g~~l~v~~~~~~~~~~---~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A 149 (175)
T 1fje_B 79 -FGNEIKLEKPKGRDSKK---VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADA 149 (175)
T ss_dssp -TTEEEEEECCCCSSCST---TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHH
T ss_pred -CCeEEEEecCCCccccc---cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHH
Confidence 48999999997765432 2356899999999999999999999999987765 46788999999999999999
Q ss_pred HHHHHHhCCCeecCCeeEEEE
Q 013047 184 VACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 184 ~~Ai~~l~g~~~~g~~i~v~v 204 (450)
.+|+++||+..|.|+.|+|.+
T Consensus 150 ~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 150 EKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp HHHHHHHTEEEETTEEEEEEE
T ss_pred HHHHHHhCCCEECCeEEEEEe
Confidence 999999999999998755544
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=6.4e-29 Score=234.80 Aligned_cols=162 Identities=17% Similarity=0.298 Sum_probs=140.7
Q ss_pred CCCCCeEEEcCCCC-CCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 27 SEDNDTLFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 27 ~~~~~~lyV~nLp~-~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
...+++|||+|||. ++|+++|+++|++||. |++|+|+.++ +|||||+|.+.++|++||+.|++..+ .
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~--i~~v~i~~~~------~g~afV~F~~~~~A~~Ai~~l~g~~~----~ 98 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGD--VQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKL----H 98 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTC--EEEEEECCTT------SCCEEEEESCHHHHHHHHHHHTTCBC----S
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCC--eEEEEEEECC------CCEEEEEECCHHHHHHHHHHhCCCeE----C
Confidence 45688999999999 9999999999999999 9999999874 58999999999999999999999887 5
Q ss_pred CceEEEeecCCCCCCCc------------------------------cccCCccEEEEcCCCCCchhHHHHHhhhccC-c
Q 013047 106 ERTVKVAFAEPLREPDP------------------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYG-D 154 (450)
Q Consensus 106 gr~i~v~~a~~~~~~~~------------------------------~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-~ 154 (450)
++.|+|.++..+....+ ....+.++|||+||+.++++++|+++|++|| .
T Consensus 99 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~ 178 (229)
T 2adc_A 99 GKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGV 178 (229)
T ss_dssp SSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCC
T ss_pred CeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCC
Confidence 89999999875421100 0112358999999999999999999999999 9
Q ss_pred eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeec-CCeeEEEEE
Q 013047 155 VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS-DGNSKVKLR 205 (450)
Q Consensus 155 v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~-g~~i~v~v~ 205 (450)
|+.|.|+.+ .+++|||+|++.++|++||+.||+..|. ++.|+|.+.
T Consensus 179 i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 179 VKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp EEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred eeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 999999653 4789999999999999999999999999 888776654
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=5.6e-29 Score=229.20 Aligned_cols=161 Identities=17% Similarity=0.298 Sum_probs=140.2
Q ss_pred CCCeEEEcCCCC-CCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 29 DNDTLFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 29 ~~~~lyV~nLp~-~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
++++|||+|||. ++|+++|+++|++||. |++|+|+.++ +|||||+|.+.++|++|++.|++..+ .++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~--i~~v~i~~~~------~g~afV~f~~~~~a~~A~~~l~~~~~----~g~ 69 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGD--VQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKL----HGK 69 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCC--CSEEECSTTC------SSCCEEECTTTHHHHHHHHHHTTCCC----SSC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCC--EEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCee----cCe
Confidence 468999999999 9999999999999999 9999999874 58999999999999999999999887 589
Q ss_pred eEEEeecCCCCCCCc------------------------------cccCCccEEEEcCCCCCchhHHHHHhhhccC-ceE
Q 013047 108 TVKVAFAEPLREPDP------------------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYG-DVI 156 (450)
Q Consensus 108 ~i~v~~a~~~~~~~~------------------------------~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-~v~ 156 (450)
.|+|.++.......+ ....+.++|||+|||..+++++|+++|++|| .|+
T Consensus 70 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~ 149 (198)
T 1qm9_A 70 PIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVK 149 (198)
T ss_dssp CCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCC
T ss_pred EEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCce
Confidence 999999875421110 0112368899999999999999999999999 999
Q ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeec-CCeeEEEEEE
Q 013047 157 RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS-DGNSKVKLRA 206 (450)
Q Consensus 157 ~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~-g~~i~v~v~~ 206 (450)
.|.|+.+ .+++|||+|++.++|++|++.||+..|. ++.|+|.+..
T Consensus 150 ~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 150 GFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp EEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred EEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 9999764 3789999999999999999999999999 8887777653
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=3.2e-28 Score=234.59 Aligned_cols=155 Identities=19% Similarity=0.324 Sum_probs=138.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
....++|||+|||+++|+++|+++|++||. |.+|+|+++ +|||||+|.+.++|++|++.|++..+ .+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~-------kg~afV~f~~~~~A~~A~~~l~g~~i----~g 85 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGE--PSEVFINRD-------RGFGFIRLESRTLAEIAKAELDGTIL----KS 85 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCC--CSEEEEETT-------TTEEEEECSSHHHHHHHHHHHTTCEE----TT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCC--EEEEEEeCC-------CcEEEEEECCHHHHHHHHHHcCCcEE----CC
Confidence 445689999999999999999999999999 999999764 48999999999999999999999877 58
Q ss_pred ceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 013047 107 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 186 (450)
Q Consensus 107 r~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~A 186 (450)
+.|+|.++.+ ..+|||+||+..+|+++|+++|++||.|+.|.|+.+ .+++++|||||+|++.++|.+|
T Consensus 86 ~~l~v~~a~~-----------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A 153 (261)
T 3sde_A 86 RPLRIRFATH-----------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKA 153 (261)
T ss_dssp EECEEEECCC-----------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHH
T ss_pred ceeEeeeccc-----------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHH
Confidence 9999999863 468999999999999999999999999999999999 5899999999999999999999
Q ss_pred HHHhCC-Ceec---CCeeEEEEEE
Q 013047 187 INAINN-KEFS---DGNSKVKLRA 206 (450)
Q Consensus 187 i~~l~g-~~~~---g~~i~v~v~~ 206 (450)
|+.||+ ..+. ++.+.|....
T Consensus 154 ~~~l~~~~~~~~~~~r~i~v~~~~ 177 (261)
T 3sde_A 154 LERCGDGAFLLTTTPRPVIVEPME 177 (261)
T ss_dssp HHHHHHSCEESSSSCCBCEEEECC
T ss_pred HHHhcCCeEEecCCCceEEEeecc
Confidence 999954 4443 6766655543
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=1.2e-27 Score=232.72 Aligned_cols=152 Identities=18% Similarity=0.325 Sum_probs=139.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
++++|||+|||.++|+++|+++|++|| |.+|++. .++|||||+|.+.++|++|++.|++..+ .++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G---i~~~~~~-------~~~g~afV~f~~~~~A~~A~~~l~~~~~----~g~~ 86 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE---LKYCFVD-------KYKGTAFVTLLNGEQAEAAINAFHQSRL----RERE 86 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC---EEEEEEE-------TTTTEEEEEESSHHHHHHHHHHHTTCEE----TTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC---CEEEEEe-------cCCCEEEEEeCCHHHHHHHHHHcCCCee----CCeE
Confidence 578999999999999999999999998 8888883 3568999999999999999999999887 5899
Q ss_pred EEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 013047 109 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188 (450)
Q Consensus 109 i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~ 188 (450)
|.|.++. ...+|||+|||+++++++|+++|++||.|..|.|+.+..++.++|+|||+|.+.++|.+|++
T Consensus 87 i~v~~~~-----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 155 (284)
T 3smz_A 87 LSVQLQP-----------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKS 155 (284)
T ss_dssp CEEEECC-----------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred EEEEecC-----------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHH
Confidence 9999864 34699999999999999999999999999999999999899999999999999999999999
Q ss_pred HhCCCeecCCeeEEEEE
Q 013047 189 AINNKEFSDGNSKVKLR 205 (450)
Q Consensus 189 ~l~g~~~~g~~i~v~v~ 205 (450)
.|++..|.++.|.|.+.
T Consensus 156 ~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 156 DLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp HHTTCEETTEECEEEEC
T ss_pred HhCCCEeCCcEEEEEEC
Confidence 99999999987776654
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=8.8e-28 Score=234.61 Aligned_cols=156 Identities=18% Similarity=0.321 Sum_probs=133.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||+++|+++|+++|+.||+ |.+|+|+.+.. .++|||||+|.+.++|++||+ +++..+ .
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~---~~~g~afV~f~~~~~A~~A~~-~~~~~~----~ 106 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGP--IIHVDVADSLK---KNFRFARIEFARYDGALAAIT-KTHKVV----G 106 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSC--EEEEEEEECTT---SSSEEEEEEESSHHHHHHHHT-TTTCEE----T
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEEECCC---CCcEEEEEEECCHHHHHHHHH-hCCcEe----C
Confidence 3455899999999999999999999999999 99999999853 257999999999999999995 888876 5
Q ss_pred CceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccC-ceEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 013047 106 ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 184 (450)
Q Consensus 106 gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~ 184 (450)
++.|.|.++ ..++|||+|||+.+++++|+++|++|| .|..|.|+.+.. +.+++||||+|.+.++|+
T Consensus 107 g~~i~v~~~------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~ 173 (292)
T 2ghp_A 107 QNEIIVSHL------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDAR 173 (292)
T ss_dssp TEECEEEEC------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHH
T ss_pred CcEEEEEEC------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHH
Confidence 899999886 467999999999999999999999999 999999998865 778999999999999999
Q ss_pred HHHHHhCCCeecCCeeEEEE
Q 013047 185 ACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 185 ~Ai~~l~g~~~~g~~i~v~v 204 (450)
+|++.|++..|.++.|.|.+
T Consensus 174 ~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 174 YCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp HHHHHHTTCEETTEECEEEE
T ss_pred HHHHHhCCCEeCCcEEEEEE
Confidence 99999999999998766654
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=3.7e-22 Score=177.32 Aligned_cols=143 Identities=14% Similarity=0.216 Sum_probs=109.9
Q ss_pred EEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccC---CCCceEEEeecC-CCCCCCccccCCccEEEEcCC
Q 013047 61 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG---HPERTVKVAFAE-PLREPDPEIMAHVKTVFLDGV 136 (450)
Q Consensus 61 ~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g---~~gr~i~v~~a~-~~~~~~~~~~~~~~~lfV~nL 136 (450)
.++|+.+ ..+++|||||+|.+.++|++|++.+++...+.+ ..+......... .............++|||+||
T Consensus 2 ~~kl~ln---~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 78 (158)
T 2kn4_A 2 QYKLILN---GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNL 78 (158)
T ss_dssp EEEEEEE---CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESC
T ss_pred cEEEEec---CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCC
Confidence 4677776 347999999999999999999988765322100 001111111111 111122223345689999999
Q ss_pred CCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 137 p~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
|+++++++|+++|++||.|+.|.|+.++.+++++|||||+|++.++|++||+.||+..|.++.|.|.+..
T Consensus 79 ~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 79 TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp CTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 9999999999999999999999999998899999999999999999999999999999999987776654
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=4.1e-22 Score=167.92 Aligned_cols=107 Identities=20% Similarity=0.354 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
.+++|||+|||+++|+++|+++|++||. |++|+|+++ ++.+||||||+|++.++|++||+.|++..+ .++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~--v~~v~i~~d---~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~----~g~~ 74 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGN--ILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNGMLL----NDRK 74 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEEE---TTEEEEEEEEEESCHHHHHHHHHHHTTCEE----TTEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCC--EEEEEEeec---CCCCCceEEEEECCHHHHHHHHHHcCCCEE----CCEE
Confidence 3678999999999999999999999999 999999998 456899999999999999999999999987 5899
Q ss_pred EEEeecCCCCCCCccc---cCCccEEEEcCCCCCchhHH
Q 013047 109 VKVAFAEPLREPDPEI---MAHVKTVFLDGVPPHWKENQ 144 (450)
Q Consensus 109 i~v~~a~~~~~~~~~~---~~~~~~lfV~nLp~~~te~d 144 (450)
|+|.++.++....... .....+|||+||++++|++.
T Consensus 75 i~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 75 VFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CEEEESSCCCC----------------------------
T ss_pred EEEEECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 9999998766543322 22345799999999999864
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=2.2e-20 Score=164.63 Aligned_cols=125 Identities=13% Similarity=0.174 Sum_probs=107.7
Q ss_pred CCCeeeEEEEEeCCHHHHHHHHHHh-CCCCcccCCCCceEEEeecCCCC-----------CCCccccCCccEEEEcCCCC
Q 013047 71 EGLSRGFAFVMFSCHVDAMAAYKRL-QKPDVVFGHPERTVKVAFAEPLR-----------EPDPEIMAHVKTVFLDGVPP 138 (450)
Q Consensus 71 tg~skG~aFVeF~~~edA~~Al~~l-~~~~~~~g~~gr~i~v~~a~~~~-----------~~~~~~~~~~~~lfV~nLp~ 138 (450)
....+|+++|||.+.++|++|++++ |+..+ .+ .|.++++..+. ..........++|||+|||+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~----~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~ 83 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGV----DG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGN 83 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTC----CC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCS
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCC----CC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCC
Confidence 4568899999999999999999999 88877 57 89998876421 11223344668999999999
Q ss_pred CchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 139 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 139 ~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
++++++|+++|++||.|+.|.|+.+ ++|||||+|.+.++|++||+.||+..|.++.|+|.+.
T Consensus 84 ~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 84 NGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp CCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 9999999999999999999999876 6899999999999999999999999999998777664
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=5.5e-20 Score=150.68 Aligned_cols=81 Identities=27% Similarity=0.450 Sum_probs=76.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
+.++|||+|||.++|+++|+++|++||+ |++|+|++|+. +++++|||||+|++.++|++||+.||+..+ .++.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~--I~~v~i~~d~~-tg~~kG~afV~f~~~~~A~~Ai~~lng~~~----~gr~ 90 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGE--VESAKLIRDKV-AGHSLGYGFVNYVTAKDAERAINTLNGLRL----QSKT 90 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSC--EEEEEEEECSS-SCCEEEEEEEEESSHHHHHHHHHHHTTCEE----TTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC--EEEeEeeecCC-CCcccccEEEEECCHHHHHHHHHHhCCCEE----CCEE
Confidence 4679999999999999999999999999 99999999876 899999999999999999999999999987 5899
Q ss_pred EEEeecCC
Q 013047 109 VKVAFAEP 116 (450)
Q Consensus 109 i~v~~a~~ 116 (450)
|+|+||+|
T Consensus 91 l~V~~AkP 98 (99)
T 4fxv_A 91 IKVSYARP 98 (99)
T ss_dssp CEEEECCB
T ss_pred EEEEEeeC
Confidence 99999975
No 25
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.81 E-value=2.5e-20 Score=191.93 Aligned_cols=156 Identities=17% Similarity=0.249 Sum_probs=106.2
Q ss_pred HHHHHHhhcCCCCeeEEEEEe----CCCCCCCeeeEE--EEEeCCHHHHHHHHHHhCCCCcccCC-----------CCce
Q 013047 46 AIKQKLKDYGVEGVENINLVS----DIQHEGLSRGFA--FVMFSCHVDAMAAYKRLQKPDVVFGH-----------PERT 108 (450)
Q Consensus 46 dL~~~F~~~G~~~V~~i~l~~----d~~~tg~skG~a--FVeF~~~edA~~Al~~l~~~~~~~g~-----------~gr~ 108 (450)
.|.++|..+++ |..|..+. +...+....|++ |++|++..+|..++..++...+..-. ....
T Consensus 8 ~L~~lF~p~pP--l~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~ 85 (437)
T 3pgw_S 8 NLLALFAPRDP--IPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETE 85 (437)
T ss_pred cHHHhcCCCCC--CcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37889999998 87773332 221123333444 88887765554443322221110000 0001
Q ss_pred EEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 013047 109 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188 (450)
Q Consensus 109 i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~ 188 (450)
+. ...+.... .......++|||+||+++||+++|+++|++||.|+.|.|+.+..+++++|||||+|++.++|++||+
T Consensus 86 ~~--~~~p~~~~-~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 162 (437)
T 3pgw_S 86 LK--MWDPHNDP-NAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162 (437)
T ss_pred hh--hcCCcccc-cccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHH
Confidence 11 11111111 1112356799999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeecCCeeEEEEEE
Q 013047 189 AINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 189 ~l~g~~~~g~~i~v~v~~ 206 (450)
+||++.|.++.|.|.++.
T Consensus 163 ~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 163 HADGKKIDGRRVLVDVER 180 (437)
T ss_pred HcCCCEECCEEEEEEEeC
Confidence 999999999987776654
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=6.8e-20 Score=147.74 Aligned_cols=85 Identities=24% Similarity=0.399 Sum_probs=76.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcC-CCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCC-CcccCCCCc
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYG-VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP-DVVFGHPER 107 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G-~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~-~~~~g~~gr 107 (450)
+++|||+|||.++|+++|+++|++|| + |++|+|++|+. |+.++|||||+|++.++|++||+.+++. .+ .++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~--v~~v~i~~d~~-t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~----~gr 73 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQ--AREVRLMRNKS-SGQSRGFAFVEFSHLQDATRWMEANQHSLNI----LGQ 73 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCC--CSBCCSSSCSS-SCCCSSEEEEECSSHHHHHHHHHTTTTEEEE----TTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCE--eEEEEEEecCC-CCCcCceEEEEecCHHHHHHHHHhcCCCeEE----CCE
Confidence 57999999999999999999999999 7 99999999876 8999999999999999999999987543 34 489
Q ss_pred eEEEeecCCCCCCC
Q 013047 108 TVKVAFAEPLREPD 121 (450)
Q Consensus 108 ~i~v~~a~~~~~~~ 121 (450)
+|+|++|.++.+..
T Consensus 74 ~i~V~~a~~~~~~~ 87 (91)
T 2lxi_A 74 KVSMHYSDPKPKIN 87 (91)
T ss_dssp EEEEECCCSCCCCS
T ss_pred EEEEEEcCCCCCCC
Confidence 99999998876644
No 27
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-19 Score=145.81 Aligned_cols=91 Identities=31% Similarity=0.390 Sum_probs=77.9
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCC
Q 013047 25 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 104 (450)
Q Consensus 25 ~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~ 104 (450)
.....-+||||+|||+++|+++|+++|++||...|.+|+|++|+. |+++||||||+|.+.++|++||+.||+....+.-
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~-tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQ-TQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSS-SSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCC-CCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 345567899999999999999999999999953478999999976 8999999999999999999999999997521111
Q ss_pred CCceEEEeecCC
Q 013047 105 PERTVKVAFAEP 116 (450)
Q Consensus 105 ~gr~i~v~~a~~ 116 (450)
.+++|+|+||+.
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 589999999863
No 28
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=145.90 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
...++|||+||++++|+++|+++|++||. |++|+|++|+. |++++|||||+|++.++|++||+.||+..+ .++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~--i~~v~i~~d~~-tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~----~gr 76 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGE--VEEVEILLHPR-TRKHLGLARVLFTSTRGAKETVKNLHLTSV----MGN 76 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSC--EEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHHTTCEE----TTE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCC--eeEEEEEECCC-CCceeeEEEEEECCHHHHHHHHHHhCCCEE----CCe
Confidence 45789999999999999999999999999 99999999976 899999999999999999999999999988 599
Q ss_pred eEEEeecCCC
Q 013047 108 TVKVAFAEPL 117 (450)
Q Consensus 108 ~i~v~~a~~~ 117 (450)
.|+|.++...
T Consensus 77 ~i~V~~a~~~ 86 (110)
T 3s8s_A 77 IIHAQLDIKG 86 (110)
T ss_dssp ECEEEECSTT
T ss_pred EEEEEECCCC
Confidence 9999998643
No 29
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=3.8e-19 Score=149.29 Aligned_cols=105 Identities=25% Similarity=0.316 Sum_probs=92.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
+..+++|||+|||.++|+++|+++|++||. |++|.|+.+ +.++|||||+|.+.++|++|++.||+..+ .+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--v~~v~i~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g 74 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGP--IRQIRVGNT----PETRGTAYVVYEDIFDAKNAVDHLSGFNV----SN 74 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSC--EEEEEEECS----TTTTTCEEEEESSHHHHHHHHHHHTTCBS----SS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEeeC----CCCCcEEEEEECCHHHHHHHHHHcCCCEE----CC
Confidence 456789999999999999999999999999 999999975 44589999999999999999999999987 58
Q ss_pred ceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCc
Q 013047 107 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGD 154 (450)
Q Consensus 107 r~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~ 154 (450)
+.|+|.++.++... .++....++++|+++|++||.
T Consensus 75 ~~l~v~~a~~~~~~-------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 75 RYLVVLYYNANRAF-------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CBCEEEECCHHHHT-------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred eEEEEEEecCChhh-------------hhhhHhHhHHHHHHHHHHhCC
Confidence 99999999754432 467778999999999999983
No 30
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.3e-18 Score=138.34 Aligned_cols=87 Identities=24% Similarity=0.427 Sum_probs=80.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
+..+++|||+|||.++|+++|+++|++||. |++|+|+.++. +++++|||||+|++.++|++||+.||+..+ .+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~--v~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g 74 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGK--IDNIVLMKDSD-TGRSKGYGFITFSDSECARRALEQLNGFEL----AG 74 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSC--EEEEEEECCSS-SCCCCSEEEEEESCHHHHHHHHHHHTTCCS----SS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCC--EeEEEEeecCC-CCceeeEEEEEECCHHHHHHHHHHhCCCee----CC
Confidence 356889999999999999999999999999 99999999876 899999999999999999999999999887 58
Q ss_pred ceEEEeecCCCCCC
Q 013047 107 RTVKVAFAEPLREP 120 (450)
Q Consensus 107 r~i~v~~a~~~~~~ 120 (450)
+.|+|.++.++...
T Consensus 75 ~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 75 RPMRVGHVTERLDG 88 (95)
T ss_dssp SCCEEEESSCCCCC
T ss_pred cEEEEEEcccccCC
Confidence 99999999876654
No 31
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.8e-18 Score=139.50 Aligned_cols=90 Identities=23% Similarity=0.368 Sum_probs=81.6
Q ss_pred cccCCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcc
Q 013047 22 CGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVV 101 (450)
Q Consensus 22 ~~~~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~ 101 (450)
.......+.++|||+|||.++|+++|+++|++||. |++|+|+.++ ++.++|||||+|.+.++|++||+.||+..+
T Consensus 9 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~- 83 (100)
T 2do4_A 9 FRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGT--VKDLRLVTNR--AGKPKGLAYVEYENESQASQAVMKMDGMTI- 83 (100)
T ss_dssp CCCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSC--EEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTEES-
T ss_pred cCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCC--eEEEEEEECC--CCCEEeEEEEEECCHHHHHHHHHHhCCCEE-
Confidence 34455667899999999999999999999999999 9999999986 899999999999999999999999999876
Q ss_pred cCCCCceEEEeecCCCCC
Q 013047 102 FGHPERTVKVAFAEPLRE 119 (450)
Q Consensus 102 ~g~~gr~i~v~~a~~~~~ 119 (450)
.++.|+|.++.++..
T Consensus 84 ---~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 84 ---KENIIKVAISNSGPS 98 (100)
T ss_dssp ---SSCEEEEEECCCCSC
T ss_pred ---CCEEEEEEECCCCCC
Confidence 589999999987654
No 32
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=136.70 Aligned_cols=84 Identities=24% Similarity=0.395 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
..+.++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++|++.||+..+ .+
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g 75 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGR--ISDARVVKDMA-TGKSKGYGFVSFFNKWDAENAIQQMGGQWL----GG 75 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHHTTCEE----TT
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCC--EeEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHcCCCEE----CC
Confidence 345789999999999999999999999999 99999999865 899999999999999999999999999877 58
Q ss_pred ceEEEeecCCC
Q 013047 107 RTVKVAFAEPL 117 (450)
Q Consensus 107 r~i~v~~a~~~ 117 (450)
+.|+|.++.++
T Consensus 76 ~~l~v~~a~~k 86 (87)
T 3bs9_A 76 RQIRTNWATRK 86 (87)
T ss_dssp EECEEEEEC--
T ss_pred eEEEEEecCCC
Confidence 99999999754
No 33
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=5.7e-18 Score=142.16 Aligned_cols=89 Identities=20% Similarity=0.334 Sum_probs=81.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
...+.++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++||+.||+..+ .
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~ 93 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGN--VVSAKVFIDKQ-TNLSKCFGFVSYDNPVSAQAAIQSMNGFQI----G 93 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSC--CSEEEEEECSS-SCSEEEEEEEECSSHHHHHHHHHHHTTCEE----T
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEEECCC-CCCcCccEEEEECCHHHHHHHHHHcCCCEE----C
Confidence 3445789999999999999999999999999 99999999875 899999999999999999999999999887 5
Q ss_pred CceEEEeecCCCCCCC
Q 013047 106 ERTVKVAFAEPLREPD 121 (450)
Q Consensus 106 gr~i~v~~a~~~~~~~ 121 (450)
++.|+|.++.++....
T Consensus 94 g~~l~V~~a~~~~~~~ 109 (115)
T 2cpz_A 94 MKRLKVQLKRSKNDSK 109 (115)
T ss_dssp TEECEEECCCCSCCCC
T ss_pred CEEEEEEEcCCCCcCC
Confidence 8999999998776543
No 34
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=4.2e-18 Score=134.09 Aligned_cols=81 Identities=30% Similarity=0.499 Sum_probs=76.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEE
Q 013047 31 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 110 (450)
Q Consensus 31 ~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~ 110 (450)
.+|||+|||.++|+++|+++|++||. |.+|+|+.++. ++.++|||||+|.+.++|++|++.||+..+ .++.|+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~--i~~~~i~~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~g~~~----~g~~l~ 74 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPS--YLSGHVMWDMQ-TGSSRGYGFVSFTSQDDAQNAMDSMQGQDL----NGRPLR 74 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTT--EEEEEEEECTT-TCCEEEEEEEEESCHHHHHHHHHHHTTCEE----TTEECE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEEEcCC-CCCccceEEEEECCHHHHHHHHHHhcCCee----CCcEEE
Confidence 58999999999999999999999999 99999999866 899999999999999999999999999987 589999
Q ss_pred EeecCCCC
Q 013047 111 VAFAEPLR 118 (450)
Q Consensus 111 v~~a~~~~ 118 (450)
|.++.++.
T Consensus 75 v~~a~~~~ 82 (83)
T 3md1_A 75 INWAAKLE 82 (83)
T ss_dssp EEECCCCC
T ss_pred EEecCcCC
Confidence 99998754
No 35
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.5e-18 Score=139.36 Aligned_cols=87 Identities=25% Similarity=0.371 Sum_probs=80.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
+.+.++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++||+.||+..+ .+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g 77 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGP--LSELHYPIDSL-TKKPKGFAFVTFMFPEHAVKAYAEVDGQVF----QG 77 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSC--EEEEECCCCTT-TCCCCSEEEEEESSHHHHHHHHHHTTTEES----SS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--EeEEEEEecCC-CCCcCeEEEEEECCHHHHHHHHHHhCCCEE----CC
Confidence 456789999999999999999999999999 99999999875 899999999999999999999999999877 58
Q ss_pred ceEEEeecCCCCCC
Q 013047 107 RTVKVAFAEPLREP 120 (450)
Q Consensus 107 r~i~v~~a~~~~~~ 120 (450)
+.|+|.++.++...
T Consensus 78 ~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 78 RMLHVLPSTIKKEA 91 (99)
T ss_dssp CEEEEEECCCCSTT
T ss_pred cEEEEEEcCCCccc
Confidence 99999999877654
No 36
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=2.7e-18 Score=153.67 Aligned_cols=126 Identities=21% Similarity=0.283 Sum_probs=76.4
Q ss_pred EEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCC---------------CCCCccccCCccEEEEcCCCCCchhHH
Q 013047 80 VMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL---------------REPDPEIMAHVKTVFLDGVPPHWKENQ 144 (450)
Q Consensus 80 VeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~---------------~~~~~~~~~~~~~lfV~nLp~~~te~d 144 (450)
.+|++.+||+.|+..|+..... .+++.+.+.++... ....+......++|||+|||+++++++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~--~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 88 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKH--RKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDE 88 (165)
T ss_dssp ---------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHH
T ss_pred hhhhccccccccchhhcccccc--ccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 8999999999999998886552 12444544442211 111122234557899999999999999
Q ss_pred HHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEEe
Q 013047 145 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 207 (450)
Q Consensus 145 L~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~~ 207 (450)
|+++|++||.|+.|.|+.++.++.++|||||+|.+.++|++||+.||+..|.++.|.|.+...
T Consensus 89 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 151 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 151 (165)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999998877766443
No 37
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.1e-18 Score=139.74 Aligned_cols=88 Identities=27% Similarity=0.421 Sum_probs=80.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
...+.++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++||+.||+..+ .
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~ 80 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQ--ISEVVVVKDRE-TQRSRGFGFVTFENIDDAKDAMMAMNGKSV----D 80 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSC--CCEEEECCCSS-SCSCCSEEEEECSSHHHHHHHHHHHTTCCT----T
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCC--eEEEEEEeCCC-CCCcccEEEEEECCHHHHHHHHHHhCCCEE----C
Confidence 3456889999999999999999999999999 99999999875 899999999999999999999999999987 5
Q ss_pred CceEEEeecCCCCCC
Q 013047 106 ERTVKVAFAEPLREP 120 (450)
Q Consensus 106 gr~i~v~~a~~~~~~ 120 (450)
++.|+|.++.++...
T Consensus 81 g~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 81 GRQIRVDQAGKSSDN 95 (102)
T ss_dssp SCCCEEEEEECCCCC
T ss_pred CeEEEEEECCCCCCC
Confidence 899999999876553
No 38
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=140.55 Aligned_cols=89 Identities=25% Similarity=0.408 Sum_probs=81.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
...+.++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++||+.||+..+ .
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~ 83 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGS--ISRIYLAKDKT-TGQSKGFAFISFHRREDAARAIAGVSGFGY----D 83 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCC--EEEEEEEECSS-SCSEEEEEEEEESSHHHHHHHHHHTTTCEE----T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCC--eEEEEEeecCC-CCceeeEEEEEECCHHHHHHHHHHcCCCee----C
Confidence 3456789999999999999999999999999 99999999875 899999999999999999999999999887 5
Q ss_pred CceEEEeecCCCCCCC
Q 013047 106 ERTVKVAFAEPLREPD 121 (450)
Q Consensus 106 gr~i~v~~a~~~~~~~ 121 (450)
++.|+|.++.++....
T Consensus 84 g~~l~v~~a~~~~~~~ 99 (103)
T 2cq0_A 84 HLILNVEWAKPSTNSG 99 (103)
T ss_dssp TEECEEEESSCCCCSC
T ss_pred CcEEEEEECCCCCCCC
Confidence 8999999998776543
No 39
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=8.5e-18 Score=138.59 Aligned_cols=90 Identities=28% Similarity=0.493 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
....++|||+|||.++|+++|+++|++||. |++|+|+.++ ++.++|||||+|.+.++|++||+.||+..+.-+ ..
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg-~~ 86 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGV--IDECTVLRGP--DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG-AS 86 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSC--EEEEEEEECS--SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT-CS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEEECC--CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC-CC
Confidence 345899999999999999999999999999 9999999987 799999999999999999999999999987311 12
Q ss_pred ceEEEeecCCCCCCC
Q 013047 107 RTVKVAFAEPLREPD 121 (450)
Q Consensus 107 r~i~v~~a~~~~~~~ 121 (450)
+.|+|.++.++.+..
T Consensus 87 ~~l~V~~a~~~~~~~ 101 (105)
T 2dnh_A 87 SSLVVKFADTDKESG 101 (105)
T ss_dssp SCCEEEESCSSCCCS
T ss_pred ccEEEEECccCcccC
Confidence 999999998776543
No 40
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=142.07 Aligned_cols=95 Identities=20% Similarity=0.288 Sum_probs=81.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEE
Q 013047 31 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 110 (450)
Q Consensus 31 ~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~ 110 (450)
++|||+|||.++|+++|+++|++||. |++|+|+.+ ++|||||+|++.++|++|++.|++..+ .++.|+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~ 68 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGP--LRTVWIARN------PPGFAFVEFEDPRDAEDAVRGLDGKVI----CGSRVR 68 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCC--CSEEEEESS------SSSEEEEECSSHHHHHHHHHHHHHSCS----SSCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEeeC------CCCEEEEEECCHHHHHHHHHHHCCCeE----CCcEEE
Confidence 58999999999999999999999999 999999976 569999999999999999999999887 589999
Q ss_pred EeecCCCCCCCcc-----ccCCccEEEEcCCC
Q 013047 111 VAFAEPLREPDPE-----IMAHVKTVFLDGVP 137 (450)
Q Consensus 111 v~~a~~~~~~~~~-----~~~~~~~lfV~nLp 137 (450)
|.++.++...... ......+|||+||+
T Consensus 69 V~~a~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 69 VELSTGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp EEESSSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred EEEccCCCCcccCCCCCccccCCCceecCCCC
Confidence 9999876543221 12235789999996
No 41
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.5e-18 Score=139.75 Aligned_cols=88 Identities=20% Similarity=0.285 Sum_probs=80.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||+++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++||+.|++..+ .
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~ 83 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGP--VVNTHMPKDRV-TGQHQGYGFVEFLSEEDADYAIKIMDMIKL----Y 83 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSC--EEEEECCBCSS-SCSBCSCEEEEESSHHHHHHHHHHSSSCBC----S
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEEecCC-CCcCCcEEEEEECCHHHHHHHHHHhCCCeE----C
Confidence 4456889999999999999999999999999 99999999875 899999999999999999999999999887 5
Q ss_pred CceEEEeecCCCCCC
Q 013047 106 ERTVKVAFAEPLREP 120 (450)
Q Consensus 106 gr~i~v~~a~~~~~~ 120 (450)
++.|+|.++.++...
T Consensus 84 g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 84 GKPIRVNKASAHNKN 98 (105)
T ss_dssp SCBCEEEETTTTSCC
T ss_pred CeEEEEEECCCCCcC
Confidence 899999999876654
No 42
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.3e-18 Score=138.37 Aligned_cols=87 Identities=24% Similarity=0.455 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
....++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|++.++|++||+ |++..+ .+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~-~~~~~~----~g 78 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGV--VTEVVMIYDAE-KQRPRGFGFITFEDEQSVDQAVN-MHFHDI----MG 78 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSC--EEEEEECCCTT-TCSCCSEEEEEESSHHHHHHHHH-HCCCBS----SS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEEeCCC-CCCCCceEEEEECCHHHHHHHHH-hCCCEE----CC
Confidence 456789999999999999999999999999 99999999875 89999999999999999999998 999877 58
Q ss_pred ceEEEeecCCCCCCC
Q 013047 107 RTVKVAFAEPLREPD 121 (450)
Q Consensus 107 r~i~v~~a~~~~~~~ 121 (450)
+.|+|.++.++....
T Consensus 79 ~~l~V~~a~~~~~~~ 93 (99)
T 2dgs_A 79 KKVEVKRAEPRDSKS 93 (99)
T ss_dssp CBCEEEECCCCCCCC
T ss_pred eEEEEEECCCCcccC
Confidence 999999998776543
No 43
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=1.1e-17 Score=140.34 Aligned_cols=88 Identities=24% Similarity=0.411 Sum_probs=80.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
...+.++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++||+.|++..+ .
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~ 83 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGR--ISDARVVKDMA-TGKSKGYGFVSFFNKWDAENAIQQMGGQWL----G 83 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHTTTCEE----T
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEEEcCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEE----C
Confidence 4456889999999999999999999999999 99999999875 899999999999999999999999999877 5
Q ss_pred CceEEEeecCCCCCC
Q 013047 106 ERTVKVAFAEPLREP 120 (450)
Q Consensus 106 gr~i~v~~a~~~~~~ 120 (450)
++.|+|.++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 84 GRQIRTNWATRKPPA 98 (115)
T ss_dssp TEECEEEESSCCCCC
T ss_pred CEEEEEEEccCCCCC
Confidence 899999999876654
No 44
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.75 E-value=4.3e-18 Score=139.33 Aligned_cols=79 Identities=20% Similarity=0.389 Sum_probs=74.3
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
..++|||+|||+++|+++|+++|++||.|+.|.|+.++.+++++|||||+|++.++|++||++||+..|.|+.|+|.++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999988766553
No 45
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3e-18 Score=138.86 Aligned_cols=88 Identities=20% Similarity=0.384 Sum_probs=80.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEE-EEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI-NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i-~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
+...++|||+|||.++|+++|+++|++||. |++| +|+.++. ++.++|||||+|++.++|++||+.||+..+ .
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~~~~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~----~ 74 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGV--ILQTPKIMRDPD-TGNSKGYAFINFASFDASDAAIEAMNGQYL----C 74 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSC--BSSCCEECCCTT-TCSCCSEEEEEBSSHHHHHHHHHTTTTCEE----T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEEEEcCC-CCCcCeEEEEEECCHHHHHHHHHHcCCCEE----C
Confidence 346789999999999999999999999999 9999 9999865 899999999999999999999999999887 5
Q ss_pred CceEEEeecCCCCCCC
Q 013047 106 ERTVKVAFAEPLREPD 121 (450)
Q Consensus 106 gr~i~v~~a~~~~~~~ 121 (450)
++.|+|.++.++....
T Consensus 75 g~~l~v~~a~~~~~~~ 90 (96)
T 1x5t_A 75 NRPITVSYAFKKDSKG 90 (96)
T ss_dssp TEECEEEESCCCCCCC
T ss_pred CEEEEEEEecccCCCC
Confidence 8999999998766543
No 46
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=9.7e-19 Score=151.47 Aligned_cols=120 Identities=14% Similarity=0.263 Sum_probs=78.1
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCceE
Q 013047 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVI 156 (450)
Q Consensus 77 ~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~ 156 (450)
++|++|++...|..|++.+++.... ++ -.+.+..+ +......++|||+|||+++|+++|+++|++||.|+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~----g~-~~~~~~~~-----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 75 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQM----GR-GSMSYGRP-----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG 75 (135)
T ss_dssp ----------------------------------CCSCCS-----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCS
T ss_pred cccccccCCCchhhhhhhccCCCCC----CC-CCCCcCCC-----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 5677777777777888777765431 11 12222222 12233568999999999999999999999999999
Q ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 157 RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 157 ~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
.|.|+.++.+++++|||||+|++.++|++||+.||+..|.++.|+|.+..
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 99999998899999999999999999999999999999999987776643
No 47
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=4.6e-18 Score=140.46 Aligned_cols=91 Identities=21% Similarity=0.395 Sum_probs=81.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||.++|+++|+++|++||. |++|+|+.++. +++++|||||+|.+.++|++||+.||+..++.+ .
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~-~ 84 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGK--IYELTVLKDRF-TGMHKGCAFLTYCERESALKAQSALHEQKTLPG-M 84 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSC--CCEEECCCCSS-SCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT-C
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEEecCC-CCCcceEEEEEECCHHHHHHHHHHhcCCcccCC-C
Confidence 4456789999999999999999999999999 99999999876 899999999999999999999999999876443 4
Q ss_pred CceEEEeecCCCCCC
Q 013047 106 ERTVKVAFAEPLREP 120 (450)
Q Consensus 106 gr~i~v~~a~~~~~~ 120 (450)
++.|+|.++.++...
T Consensus 85 g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 85 NRPIQVKPADSESRG 99 (106)
T ss_dssp SSCCEEEECCCCSCC
T ss_pred CceEEEEECCccccc
Confidence 799999999876654
No 48
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.75 E-value=1.5e-18 Score=139.38 Aligned_cols=82 Identities=21% Similarity=0.311 Sum_probs=71.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcC--CCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 31 DTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 31 ~~lyV~nLp~~~te~dL~~~F~~~G--~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
.+|||+|||+++|+++|+++|++|| . |++|+|+.++. +++++|||||+|.+.++|++||+.||+..+ .++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~--v~~v~i~~~~~-~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~----~gr~ 74 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVND--ILEIKFFENRA-NGQSKGFALVGVGSEASSKKLMDLLPKREL----HGQN 74 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCC--CCCEEEEECTT-TCCEEEEEEECC-CHHHHHHHHHHGGGSCS----SSCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCc--eEEEEEEecCC-CCccCcEEEEEECCHHHHHHHHHHcCCCee----CCEE
Confidence 4799999999999999999999999 8 99999999876 899999999999999999999999999987 5899
Q ss_pred EEEeecCCCCC
Q 013047 109 VKVAFAEPLRE 119 (450)
Q Consensus 109 i~v~~a~~~~~ 119 (450)
|+|.++.+...
T Consensus 75 i~V~~~~~~~~ 85 (90)
T 3p5t_L 75 PVVTPSNKLEH 85 (90)
T ss_dssp CEECCC-----
T ss_pred EEEEECCCCcc
Confidence 99999976554
No 49
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=8.6e-18 Score=139.92 Aligned_cols=89 Identities=21% Similarity=0.302 Sum_probs=80.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhC------CCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ------KPD 99 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~------~~~ 99 (450)
.....++|||+|||+++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++||+.|| +..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGD--LKYVRVVLHPD-TEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSC--EEEEECCBCSS-SCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCC--eEEEEEEecCC-CCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 4456889999999999999999999999999 99999999876 89999999999999999999999999 766
Q ss_pred cccCCCCceEEEeecCCCCCCC
Q 013047 100 VVFGHPERTVKVAFAEPLREPD 121 (450)
Q Consensus 100 ~~~g~~gr~i~v~~a~~~~~~~ 121 (450)
+ .++.|+|.++.++....
T Consensus 88 ~----~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 88 L----DGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp S----SSCEEEEECCCCCCCCC
T ss_pred E----cCEEEEEEECCCCccCC
Confidence 6 58999999998776543
No 50
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=140.29 Aligned_cols=87 Identities=24% Similarity=0.347 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
..+.++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++||+.||+..+ .+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g 82 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGR--VGDVYIPREPH-TKAPRGFAFVRFHDRRDAQDAEAAMDGAEL----DG 82 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSC--EEEEECCBCSS-SCSBCSCEEEEESSSSHHHHHHHHHSSCCB----TT
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCC--EEEEEEEeCCC-CCCCCeEEEEEECCHHHHHHHHHHcCCCEE----CC
Confidence 455789999999999999999999999999 99999999875 899999999999999999999999999887 58
Q ss_pred ceEEEeecCCCCCC
Q 013047 107 RTVKVAFAEPLREP 120 (450)
Q Consensus 107 r~i~v~~a~~~~~~ 120 (450)
+.|+|.++......
T Consensus 83 ~~l~V~~a~~~~~~ 96 (103)
T 2dnm_A 83 RELRVQVARYGRRD 96 (103)
T ss_dssp BCCEEEECSSCCSC
T ss_pred cEEEEEECCcCCCC
Confidence 99999999876544
No 51
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-18 Score=140.41 Aligned_cols=89 Identities=26% Similarity=0.483 Sum_probs=81.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
...+.++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|++.++|++||+.||+..+ .
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~ 80 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGD--ITDIQIPLDYE-TEKHRGFAFVEFELAEDAAAAIDNMNESEL----F 80 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSC--CCCEECCCCSS-SCCCSSEEEECCSSHHHHHHHHHHHTTEEE----T
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCC--EEEEEEEecCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEE----C
Confidence 3456889999999999999999999999999 99999999865 899999999999999999999999999877 5
Q ss_pred CceEEEeecCCCCCCC
Q 013047 106 ERTVKVAFAEPLREPD 121 (450)
Q Consensus 106 gr~i~v~~a~~~~~~~ 121 (450)
++.|+|.++.++....
T Consensus 81 g~~l~V~~a~~~~~~~ 96 (102)
T 2cqb_A 81 GRTIRVNLAKPMRIKE 96 (102)
T ss_dssp TEEEEEEECCCCCCCC
T ss_pred CcEEEEEeCCCCCCCC
Confidence 8999999998776543
No 52
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9.6e-18 Score=137.86 Aligned_cols=88 Identities=23% Similarity=0.379 Sum_probs=80.4
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCC
Q 013047 25 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 104 (450)
Q Consensus 25 ~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~ 104 (450)
....+.++|||+|||+++|+++|+++|++||. |++|+|+.+ ++.++|||||+|.+.++|++||+.||+..+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~---~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---- 80 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGT--ITSAKVMME---GGRSKGFGFVCFSSPEEATKAVTEMNGRIV---- 80 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSC--EEEEEEEEC---SSSEEEEEEEEESSHHHHHHHHHHHTTCBS----
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--EEEEEEEcC---CCCcCEEEEEEECCHHHHHHHHHHhCCCEe----
Confidence 34557899999999999999999999999999 999999997 789999999999999999999999999987
Q ss_pred CCceEEEeecCCCCCCC
Q 013047 105 PERTVKVAFAEPLREPD 121 (450)
Q Consensus 105 ~gr~i~v~~a~~~~~~~ 121 (450)
.++.|+|.++.++....
T Consensus 81 ~g~~l~V~~a~~~~~~~ 97 (103)
T 2d9p_A 81 ATKPLYVALAQRKEERQ 97 (103)
T ss_dssp SSSBCEEEECSSCCCCC
T ss_pred CCcEEEEEEecccccCC
Confidence 58999999998876644
No 53
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7.1e-18 Score=137.27 Aligned_cols=88 Identities=26% Similarity=0.362 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCC--CCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH--EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 104 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~--tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~ 104 (450)
+.+.++|||+|||+++|+++|+++|++||. |++|+|+.++.+ |+.++|||||+|.+.++|++||+.||+..+
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~---- 75 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGA--IKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV---- 75 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSC--EEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE----
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee----
Confidence 346789999999999999999999999999 999999998653 448999999999999999999999999877
Q ss_pred CCceEEEeecCCCCCC
Q 013047 105 PERTVKVAFAEPLREP 120 (450)
Q Consensus 105 ~gr~i~v~~a~~~~~~ 120 (450)
.++.|+|+++.++...
T Consensus 76 ~g~~l~V~~a~~~~~~ 91 (98)
T 2cpf_A 76 DGHKLEVRISERATKP 91 (98)
T ss_dssp TTEECEEECSSCSSCC
T ss_pred CCeEEEEEEccCCCCC
Confidence 5899999999876654
No 54
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=5.5e-18 Score=134.08 Aligned_cols=82 Identities=26% Similarity=0.475 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
+.+.++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|++.++|++|++.||+..+ .+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g 76 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGD--ITDIQIPLDYE-TEKHRGFAFVEFELAEDAAAAIDNMNESEL----FG 76 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSC--EEEEECCEETT-TTEECSEEEEEESSHHHHHHHHHHHTTCEE----TT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCC--EEEEEEEECCC-CCccccEEEEEECCHHHHHHHHHHhCCCEE----CC
Confidence 456889999999999999999999999999 99999999865 899999999999999999999999999987 58
Q ss_pred ceEEEeecC
Q 013047 107 RTVKVAFAE 115 (450)
Q Consensus 107 r~i~v~~a~ 115 (450)
+.|+|++|+
T Consensus 77 ~~l~v~~ak 85 (85)
T 3mdf_A 77 RTIRVNLAK 85 (85)
T ss_dssp EECEEEECC
T ss_pred cEEEEEEcC
Confidence 999999874
No 55
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.8e-18 Score=139.09 Aligned_cols=86 Identities=27% Similarity=0.393 Sum_probs=78.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
...++++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++||+.||+..+ .
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~ 91 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGE--IKNIHLNLDRR-TGYLKGYTLVEYETYKEAQAAMEGLNGQDL----M 91 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSC--EEEEEEEECTT-TSSEEEEEEEEESCHHHHHHHHHHHTTCBS----S
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCC--eEEEEEEecCC-CCceeeEEEEEECCHHHHHHHHHHhcCCEE----C
Confidence 3455789999999999999999999999999 99999999876 899999999999999999999999999877 5
Q ss_pred CceEEEeecCCCC
Q 013047 106 ERTVKVAFAEPLR 118 (450)
Q Consensus 106 gr~i~v~~a~~~~ 118 (450)
++.|+|.++.++.
T Consensus 92 g~~l~V~~a~~~~ 104 (106)
T 1p27_B 92 GQPISVDWCFVRG 104 (106)
T ss_dssp SSBCEEEESEESS
T ss_pred CcEEEEEeecCCC
Confidence 8999999997654
No 56
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=138.38 Aligned_cols=90 Identities=21% Similarity=0.373 Sum_probs=80.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHh-CCCCcccCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL-QKPDVVFGH 104 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l-~~~~~~~g~ 104 (450)
.....++|||+|||.++|+++|+++|++||. |++|+|+.+...++.++|||||+|.+.++|++||+.| |+..+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---- 84 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGE--LKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL---- 84 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSC--EEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS----
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCC--eEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE----
Confidence 4556899999999999999999999999999 9999999983338999999999999999999999999 88877
Q ss_pred CCceEEEeecCCCCCCC
Q 013047 105 PERTVKVAFAEPLREPD 121 (450)
Q Consensus 105 ~gr~i~v~~a~~~~~~~ 121 (450)
.++.|+|.++.++....
T Consensus 85 ~g~~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 85 YGRRLVLEWADSEVTVQ 101 (107)
T ss_dssp SSCBCEEEECCCCCCCC
T ss_pred CCCEEEEEeCCCCCCCC
Confidence 58999999998776543
No 57
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=135.38 Aligned_cols=84 Identities=27% Similarity=0.355 Sum_probs=77.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
....+++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|++.++|++||+.||+..+ .
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~--v~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~ 83 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGP--IADVSIVYDQQ-SRRSRGFAFVYFENVDDAKEAKERANGMEL----D 83 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSC--EEEEEEEECSS-SSSEEEEEEEEESSHHHHHHHHHHHTTEEE----T
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCC--eeEEEEEEcCC-CCCcccEEEEEECCHHHHHHHHHHhCCCEE----C
Confidence 3456789999999999999999999999999 99999999875 899999999999999999999999999877 5
Q ss_pred CceEEEeecCC
Q 013047 106 ERTVKVAFAEP 116 (450)
Q Consensus 106 gr~i~v~~a~~ 116 (450)
++.|+|+++..
T Consensus 84 g~~l~v~~a~~ 94 (95)
T 2cqc_A 84 GRRIRVSGPSS 94 (95)
T ss_dssp TEEEEEECCSC
T ss_pred CEEEEEEecCC
Confidence 89999999853
No 58
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.8e-18 Score=137.31 Aligned_cols=86 Identities=17% Similarity=0.334 Sum_probs=77.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCee-EEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVE-NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 104 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~-~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~ 104 (450)
.+..+++|||+|||.++|+++|+++|++||. |+ +|+|++++. ++.++|||||+|.+.++|++||+.||+..+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---- 77 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGE--TVMSVKIIRNRL-TGIPAGYCFVEFADLATAEKCLHKINGKPL---- 77 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTC--CCCEEEEEECSS-SCCEEEEEEEECSCHHHHHHHHHTTTTSEE----
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCC--cceEEEEeecCC-CCCcCCEEEEEeCCHHHHHHHHHHHcCCcc----
Confidence 3456899999999999999999999999999 99 999999876 899999999999999999999999999877
Q ss_pred CCce----EEEeecCCCC
Q 013047 105 PERT----VKVAFAEPLR 118 (450)
Q Consensus 105 ~gr~----i~v~~a~~~~ 118 (450)
.++. |+|.|+.+..
T Consensus 78 ~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 78 PGATPAKRFKLNYATYSG 95 (99)
T ss_dssp SSCSSCEECCEEETTCCS
T ss_pred CCCCcceeEEEeecCCCC
Confidence 4666 9999997654
No 59
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=136.54 Aligned_cols=88 Identities=24% Similarity=0.339 Sum_probs=78.4
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCC
Q 013047 25 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 104 (450)
Q Consensus 25 ~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~ 104 (450)
......++|||+|||.++|+++|+++|++||. |++|+|+.+. ..++|||||+|.+.++|++||+.|++..+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~---- 80 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGP--CKSCKMITEH---TSNDPYCFVEFYEHRDAAAALAAMNGRKI---- 80 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSC--EEEEEEECCC---CSSCCEEEEEESSHHHHHHHHHHHTTEEE----
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCC--EeEEEEEecC---CCCCCEEEEEECCHHHHHHHHHHhCCCCc----
Confidence 34556899999999999999999999999999 9999999984 34789999999999999999999999887
Q ss_pred CCceEEEeecCCCCCCC
Q 013047 105 PERTVKVAFAEPLREPD 121 (450)
Q Consensus 105 ~gr~i~v~~a~~~~~~~ 121 (450)
.++.|+|.++.++....
T Consensus 81 ~g~~l~V~~a~~~~~~~ 97 (103)
T 2cqi_A 81 LGKEVKVNWATTPSSQK 97 (103)
T ss_dssp TTEEEEEEECCCTTCCC
T ss_pred CCCeEEEEECCCCcccc
Confidence 58999999998765543
No 60
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=9.9e-18 Score=141.21 Aligned_cols=86 Identities=24% Similarity=0.383 Sum_probs=79.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
...+.++|||+|||.++|+++|+++|++||. |++|+|+.+. +++++|||||+|++.++|++||+.||+..+ .
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~~~--~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~----~ 74 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGP--ISEVLLIKDR--TSKSRGFAFITFENPADAKNAAKDMNGKSL----H 74 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSC--CSEEEEECST--TTTCCCEEEEECSSHHHHHHHHHHCSSCBC----S
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--EEEEEEEECC--CCCcccEEEEEECCHHHHHHHHHHhCCCEE----C
Confidence 3456789999999999999999999999999 9999999986 899999999999999999999999999887 5
Q ss_pred CceEEEeecCCCCC
Q 013047 106 ERTVKVAFAEPLRE 119 (450)
Q Consensus 106 gr~i~v~~a~~~~~ 119 (450)
++.|+|.++.++..
T Consensus 75 g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 75 GKAIKVEQAKKPSF 88 (116)
T ss_dssp SSBCEEEECCCSSC
T ss_pred CEEEEEEECCCCCC
Confidence 89999999976554
No 61
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=1.4e-17 Score=133.74 Aligned_cols=84 Identities=21% Similarity=0.284 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
....++|||+|||.++|+++|+++|++||. |++|+|+++ +++++|||||+|.+.++|++||+.|++..+ .+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~--v~~~~i~~~---~g~~~g~afV~f~~~~~a~~a~~~l~g~~~----~g 75 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGH--VLYADIKME---NGKSKGCGVVKFESPEVAERACRMMNGMKL----SG 75 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSC--EEEEEEEES---SSCEEEEEEEEESSHHHHHHHHHHHTTCCB----TT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCC--EEEEEEEcc---CCCcceEEEEEECCHHHHHHHHHHhCCCEE----CC
Confidence 456889999999999999999999999999 999999985 889999999999999999999999999887 58
Q ss_pred ceEEEeecCCCCC
Q 013047 107 RTVKVAFAEPLRE 119 (450)
Q Consensus 107 r~i~v~~a~~~~~ 119 (450)
+.|+|.++.+...
T Consensus 76 ~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 76 REIDVRIDRNASG 88 (92)
T ss_dssp BCCCCEECSCCSS
T ss_pred cEEEEEEcCCCCC
Confidence 9999999987654
No 62
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=6.4e-18 Score=140.64 Aligned_cols=88 Identities=30% Similarity=0.457 Sum_probs=79.7
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCC
Q 013047 25 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 104 (450)
Q Consensus 25 ~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~ 104 (450)
..+.+.++|||+|||.++|+++|+++|++||. |++|+|+.+.. ++.++|||||+|.+.++|++||+.|++..+
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---- 93 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGE--IKNIHLNLDRR-TGFSKGYALVEYETHKQALAAKEALNGAEI---- 93 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSC--EEEEECCBCTT-TSSBCSEEEEEESSHHHHHHHHHHHTTCEE----
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--EEEEEEEecCC-CCCcceEEEEEECCHHHHHHHHHHcCCCEE----
Confidence 34556789999999999999999999999999 99999999865 899999999999999999999999999877
Q ss_pred CCceEEEeecCCCCC
Q 013047 105 PERTVKVAFAEPLRE 119 (450)
Q Consensus 105 ~gr~i~v~~a~~~~~ 119 (450)
.++.|+|.++.++..
T Consensus 94 ~g~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 94 MGQTIQVDWCFVKGP 108 (110)
T ss_dssp TTEECEEEESEESSC
T ss_pred CCcEEEEEEcccCCC
Confidence 589999999976543
No 63
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.74 E-value=9.3e-18 Score=140.06 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=75.0
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
+.++|||+||++++++++|+++|++||.|+.|.|+.++.|++++|||||+|++.++|++||++||++.|.|+.|+|.+.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999998777664
No 64
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.74 E-value=1.1e-17 Score=148.07 Aligned_cols=82 Identities=16% Similarity=0.280 Sum_probs=76.5
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....++|||+|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||++||+..|.++.|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999877776
Q ss_pred EE
Q 013047 205 RA 206 (450)
Q Consensus 205 ~~ 206 (450)
+.
T Consensus 116 a~ 117 (156)
T 1h2v_Z 116 DA 117 (156)
T ss_dssp ES
T ss_pred CC
Confidence 54
No 65
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=9.2e-18 Score=136.22 Aligned_cols=84 Identities=24% Similarity=0.353 Sum_probs=77.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceE
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 109 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i 109 (450)
+++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++|++.|++..+ .++.|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~----~g~~l 74 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGP--VINLKMMFDPQ-TGRSKGYAFIEFRDLESSASAVRNLNGYQL----GSRFL 74 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSC--EEEEECCBCTT-TCCBCSEEEEEESSHHHHHHHHHHHTTCEE----TTEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCC--EEEEEEEeCCC-CCccceEEEEEECCHHHHHHHHHHhCCCeE----CCeEE
Confidence 679999999999999999999999999 99999999865 899999999999999999999999999887 58999
Q ss_pred EEeecCCCCCC
Q 013047 110 KVAFAEPLREP 120 (450)
Q Consensus 110 ~v~~a~~~~~~ 120 (450)
+|.++.++...
T Consensus 75 ~V~~a~~~~~~ 85 (96)
T 2x1f_A 75 KCGYSSNSDIS 85 (96)
T ss_dssp EEEECSCSSGG
T ss_pred EEEEcCCCCCC
Confidence 99999876543
No 66
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.4e-18 Score=140.31 Aligned_cols=90 Identities=23% Similarity=0.299 Sum_probs=81.1
Q ss_pred cCCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCee--------EEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 013047 24 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVE--------NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 95 (450)
Q Consensus 24 ~~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~--------~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l 95 (450)
.....+.++|||+|||.++|+++|+++|++||. |+ .|+|+.++. ++.++|||||+|.+.++|++||+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~~~~~~~~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l 85 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGV--VKMNKRTGQPMIHIYLDKE-TGKPKGDATVSYEDPPTAKAAVEWF 85 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSC--BCBCSSSCCBSEECCBCTT-TCSBCSEEEEEBSSHHHHHHHHHHH
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC--EeEccccCccCEEEEEeCC-CCCeeeEEEEEECCHHHHHHHHHHc
Confidence 345567899999999999999999999999999 98 699999865 8999999999999999999999999
Q ss_pred CCCCcccCCCCceEEEeecCCCCCC
Q 013047 96 QKPDVVFGHPERTVKVAFAEPLREP 120 (450)
Q Consensus 96 ~~~~~~~g~~gr~i~v~~a~~~~~~ 120 (450)
|+..+ .++.|+|.++.++...
T Consensus 86 ~g~~~----~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 86 DGKDF----QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTCEE----TTEECEEECSSCCCCS
T ss_pred CCCcc----CCCEEEEEECCCCCCC
Confidence 99987 5899999999876654
No 67
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=139.11 Aligned_cols=95 Identities=27% Similarity=0.406 Sum_probs=81.1
Q ss_pred cCCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEE-eCCCCCCCeeeEEEEEeCCHHHHHHHHHHhC--CCCc
Q 013047 24 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV-SDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ--KPDV 100 (450)
Q Consensus 24 ~~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~-~d~~~tg~skG~aFVeF~~~edA~~Al~~l~--~~~~ 100 (450)
++.+.+.++|||+|||.++|+++|+++|++||. .|++|.|+ .+. +++.++|||||+|.+.++|++||+.|+ +..+
T Consensus 2 v~~s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-~v~~v~i~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~ 79 (109)
T 2dis_A 2 SSGSSGNCRLFIGGIPKMKKREEILEEIAKVTE-GVLDVIVYASAA-DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL 79 (109)
T ss_dssp CSCCCCSEEEEEECCCTTSCHHHHHHHHHHHST-TEEEEECCSSSC-TTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB
T ss_pred cccccCCCEEEEeCCCCcCCHHHHHHHHHHhcC-CceEEEEEccCC-CCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee
Confidence 455677899999999999999999999999983 39999998 554 488999999999999999999999996 4655
Q ss_pred ccCCCCceEEEeecCCCCCCCccc
Q 013047 101 VFGHPERTVKVAFAEPLREPDPEI 124 (450)
Q Consensus 101 ~~g~~gr~i~v~~a~~~~~~~~~~ 124 (450)
.++.|+|.++.++.......
T Consensus 80 ----~g~~l~V~~a~~~~~~~~~~ 99 (109)
T 2dis_A 80 ----WGHQIAVDWAEPEIDVDEDV 99 (109)
T ss_dssp ----TTBCCEEEESCSSCSTTTCC
T ss_pred ----cCCeEEEEEcCCCCCcCHHH
Confidence 58999999998877655443
No 68
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=134.73 Aligned_cols=83 Identities=30% Similarity=0.436 Sum_probs=76.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeE--------EEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVEN--------INLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 97 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~--------i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~ 97 (450)
+....++|||+|||.++|+++|+++|++||. |++ |+|+.++. +++++|||||+|.+.++|++||+.||+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~~~~~~~~~v~i~~~~~-~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGI--IKTNKKTGQPMINLYTDRE-TGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSC--BCEETTTTEESEEEEECTT-TCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCC--EeeccccccccEEEEecCC-CCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 4556889999999999999999999999999 999 99999865 899999999999999999999999999
Q ss_pred CCcccCCCCceEEEeecC
Q 013047 98 PDVVFGHPERTVKVAFAE 115 (450)
Q Consensus 98 ~~~~~g~~gr~i~v~~a~ 115 (450)
..+ .++.|+|++|+
T Consensus 86 ~~~----~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEF----SGNPIKVSFAT 99 (99)
T ss_dssp CBS----SSSBCEEEECC
T ss_pred CEe----CCcEEEEEecC
Confidence 987 58999999873
No 69
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=3.4e-18 Score=140.14 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCC------CCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCccc
Q 013047 29 DNDTLFVGNICN------TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 102 (450)
Q Consensus 29 ~~~~lyV~nLp~------~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~ 102 (450)
.+++|||+|||. ++++++|+++|++||. |++|+|++++. |++++|||||+|.+.++|++||+.||+..+
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~--i~~v~i~~d~~-tg~~kG~afV~f~~~~~A~~Ai~~lng~~~-- 79 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGK--VVNMEFPIDEA-TGKTKGFLFVECGSMNDAKKIIKSFHGKRL-- 79 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSC--EEEEECCEETT-TTEECSEEEEEESSHHHHHHHHHHHTTCBS--
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCC--EeEEEEEEcCC-CCccceEEEEEECCHHHHHHHHHHhCCccc--
Confidence 467999999999 9999999999999999 99999999975 899999999999999999999999999987
Q ss_pred CCCC-ceEEEeecCCC
Q 013047 103 GHPE-RTVKVAFAEPL 117 (450)
Q Consensus 103 g~~g-r~i~v~~a~~~ 117 (450)
.+ +.|+|.++.++
T Consensus 80 --~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 80 --DLKHRLFLYTMKDV 93 (100)
T ss_dssp --SSSCBCEEEESHHH
T ss_pred --CCCeEEEEEECchh
Confidence 57 99999998653
No 70
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=138.36 Aligned_cols=85 Identities=26% Similarity=0.426 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
+...++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++||+.|++..+ .+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i----~g 95 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGR--IESIQLMMDSE-TGRSKGYGFITFSDSECAKKALEQLNGFEL----AG 95 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSC--EEEEEEEEETT-TTEEEEEEEEEESCHHHHHHHHHHHTTCCS----SS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEEEcCC-CCccceEEEEEECCHHHHHHHHHHcCCCEE----CC
Confidence 345789999999999999999999999999 99999999865 899999999999999999999999999887 58
Q ss_pred ceEEEeecCCCC
Q 013047 107 RTVKVAFAEPLR 118 (450)
Q Consensus 107 r~i~v~~a~~~~ 118 (450)
+.|+|.++.++.
T Consensus 96 ~~l~V~~a~~k~ 107 (108)
T 2jrs_A 96 RPMKVGHVTERT 107 (108)
T ss_dssp SCCEEECSCSSC
T ss_pred EEEEEEEcccCC
Confidence 999999997654
No 71
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=134.70 Aligned_cols=83 Identities=20% Similarity=0.354 Sum_probs=76.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|++.++|++||+.||+..+ .
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~--v~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~ 84 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGK--VVKVTIMKDKD-TRKSKGVAFILFLDKDSAQNCTRAINNKQL----F 84 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSC--EEEEEECCCSS-SCCCTTCEEEEESCHHHHHHHHHHTTTEEE----T
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCC--eEEEEEEeCCC-CCCcccEEEEEECCHHHHHHHHHHcCCCee----C
Confidence 3456789999999999999999999999999 99999999875 799999999999999999999999999877 5
Q ss_pred CceEEEeecC
Q 013047 106 ERTVKVAFAE 115 (450)
Q Consensus 106 gr~i~v~~a~ 115 (450)
++.|+|++|+
T Consensus 85 g~~l~v~~ak 94 (94)
T 2e5h_A 85 GRVIKASIAI 94 (94)
T ss_dssp TEEEEEEECC
T ss_pred CcEEEEEecC
Confidence 8999999873
No 72
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=133.15 Aligned_cols=85 Identities=20% Similarity=0.339 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
...++|||+|||.++|+++|+++|++||. |++|+|+.+....+.++|||||+|.+.++|++|++.||+..+ .++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~ 75 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGK--IKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI----DGQ 75 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSC--EEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE----TTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCC--EEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE----CCe
Confidence 45789999999999999999999999999 999999998652234899999999999999999999999987 589
Q ss_pred eEEEeecCCCC
Q 013047 108 TVKVAFAEPLR 118 (450)
Q Consensus 108 ~i~v~~a~~~~ 118 (450)
.|+|+++.+.+
T Consensus 76 ~l~v~~a~~~~ 86 (88)
T 4a8x_A 76 EITATAVLAPW 86 (88)
T ss_dssp ECEEEEECCCC
T ss_pred EEEEEECCCCC
Confidence 99999997654
No 73
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=139.47 Aligned_cols=87 Identities=23% Similarity=0.332 Sum_probs=78.2
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCC
Q 013047 25 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 104 (450)
Q Consensus 25 ~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~ 104 (450)
......++|||+|||+++|+++|+++|++||. |++|+|+.++. +++++|||||+|.+.++|++||+.|++ .+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~---- 83 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGD--IEEAVVITDRQ-TGKSRGYGFVTMADRAAAERACKDPNP-II---- 83 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSC--EEEEEESCCSS-SCCCCSEEEEEESSHHHHHHHHTCSSC-EE----
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCC--eeEEEEEEcCC-CCccceEEEEEECCHHHHHHHHHhCCC-cC----
Confidence 34556899999999999999999999999999 99999999875 899999999999999999999999997 44
Q ss_pred CCceEEEeecCCCCC
Q 013047 105 PERTVKVAFAEPLRE 119 (450)
Q Consensus 105 ~gr~i~v~~a~~~~~ 119 (450)
.++.|+|+++.....
T Consensus 84 ~g~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 84 DGRKANVNLAYLGAK 98 (116)
T ss_dssp TTEECEEEESTTTCC
T ss_pred CCEEEEEEEcccCCC
Confidence 489999999976544
No 74
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=1.1e-17 Score=142.65 Aligned_cols=89 Identities=27% Similarity=0.406 Sum_probs=80.5
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCC
Q 013047 25 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 104 (450)
Q Consensus 25 ~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~ 104 (450)
....+.++|||+|||+++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++||+.||+..|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---- 89 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGE--IKNIHLNLDRR-TGYLKGYTLVEYETYKEAQAAMEGLNGQDL---- 89 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSC--EEEEECCBCTT-TSSBCSCEEEEESSHHHHHHHHHHHTTCBS----
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHhCCCee----
Confidence 34556789999999999999999999999999 99999999876 899999999999999999999999999887
Q ss_pred CCceEEEeecCCCCCC
Q 013047 105 PERTVKVAFAEPLREP 120 (450)
Q Consensus 105 ~gr~i~v~~a~~~~~~ 120 (450)
.++.|+|+++.++...
T Consensus 90 ~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 90 MGQPISVDWCFVRGPP 105 (126)
T ss_dssp SSSBCEEEESEESSSC
T ss_pred CCeEEEEEEecCCCCC
Confidence 5899999999765543
No 75
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=2.8e-17 Score=145.61 Aligned_cols=84 Identities=23% Similarity=0.365 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
...++|||+|||.++|+++|+++|++||+ |++|+|+.++. ++.++|||||+|++.++|++||+.||+..| .++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~----~g~ 109 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGD--IKKIIMGLDKM-KKTACGFCFVEYYSRADAENAMRYINGTRL----DDR 109 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHTTTSEE----TTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHhCCCEE----CCe
Confidence 46789999999999999999999999999 99999999876 899999999999999999999999999887 589
Q ss_pred eEEEeecCCCC
Q 013047 108 TVKVAFAEPLR 118 (450)
Q Consensus 108 ~i~v~~a~~~~ 118 (450)
.|+|+|+.+..
T Consensus 110 ~l~V~~a~~~~ 120 (156)
T 1h2v_Z 110 IIRTDWDAGFK 120 (156)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEECCCCC
Confidence 99999997654
No 76
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=143.20 Aligned_cols=87 Identities=26% Similarity=0.385 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
....++|||+|||.++|+++|+++|++||+ |++|+|++++. ++.++|||||+|++.++|++||+.||+..+ .+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g 111 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGP--IESVKIVCDRE-TRQSRGYGFVKFQSGSSAQQAIAGLNGFNI----LN 111 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSC--EEEEEEEEETT-TTEEEEEEEEEESSHHHHHHHHHHTTTEEC----SS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEEEcCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEE----CC
Confidence 345789999999999999999999999999 99999999876 899999999999999999999999999877 58
Q ss_pred ceEEEeecCCCCCC
Q 013047 107 RTVKVAFAEPLREP 120 (450)
Q Consensus 107 r~i~v~~a~~~~~~ 120 (450)
+.|+|.++.++...
T Consensus 112 ~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 112 KRLKVALAASGHQR 125 (139)
T ss_dssp CEEEEEESSCCCCC
T ss_pred eEEEEEECCCCCCC
Confidence 99999999877654
No 77
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=1.3e-17 Score=143.24 Aligned_cols=86 Identities=29% Similarity=0.389 Sum_probs=79.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
....+++|||+|||.++|+++|+++|++||+ |++|+|+.++. ++.++|||||+|++.++|++||+.|++..| .
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~--I~~v~i~~d~~-tg~~~G~afV~F~~~~~A~~Ai~~lng~~i----~ 114 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGP--IADVSIVYDQQ-SRRSRGFAFVYFENVDDAKEAKERANGMEL----D 114 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSC--EEEEEEECCSS-SSCCCCEEEEEESCHHHHHHHHHHHTTCCS----S
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHhCCCEE----C
Confidence 3456789999999999999999999999999 99999999875 899999999999999999999999999887 5
Q ss_pred CceEEEeecCCCC
Q 013047 106 ERTVKVAFAEPLR 118 (450)
Q Consensus 106 gr~i~v~~a~~~~ 118 (450)
++.|+|+++.+++
T Consensus 115 g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 115 GRRIRVDFSITKR 127 (129)
T ss_dssp SSCCEESCCSSSS
T ss_pred CEEEEEEEecCCC
Confidence 8999999998754
No 78
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.5e-17 Score=134.45 Aligned_cols=87 Identities=23% Similarity=0.338 Sum_probs=78.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
...+.++|||+|||.++|+++|+++|++||. |++|+|+.+. ..++|||||+|.+.++|++||+.|++..+ .
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~--v~~v~i~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~ 81 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGK--ILDVEIIFNE---RGSKGFGFVTFENSADADRAREKLHGTVV----E 81 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSC--EEEEEEECCT---TTTCCEEEEEESCHHHHHHHHHHHTTCEE----T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEEecC---CCCcEEEEEEECCHHHHHHHHHHhCCCEE----C
Confidence 4456899999999999999999999999999 9999999985 34899999999999999999999999887 5
Q ss_pred CceEEEeecCCCCCCC
Q 013047 106 ERTVKVAFAEPLREPD 121 (450)
Q Consensus 106 gr~i~v~~a~~~~~~~ 121 (450)
++.|+|.++.++....
T Consensus 82 g~~l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 82 GRKIEVNNATARVMTN 97 (103)
T ss_dssp TEECEEEECCSSCCCC
T ss_pred CEEEEEEEcccCCCCC
Confidence 8999999998776543
No 79
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=136.80 Aligned_cols=86 Identities=23% Similarity=0.303 Sum_probs=78.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||.++|+++|+++|++||. |++|+|+.++ +++++|||||+|++.++|++||+.||+..+ .
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~--i~~~~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~ 82 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGV--VVRADILEDK--DGKSRGIGTVTFEQSIEAVQAISMFNGQLL----F 82 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSC--EEEEEEEECT--TCSEEEEEEEEESSHHHHHHHHHHHTTCEE----T
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEEECC--CCCeeeEEEEEECCHHHHHHHHHHhCCCEe----C
Confidence 4456789999999999999999999999999 9999999986 699999999999999999999999999887 5
Q ss_pred CceEEEeecCCCCC
Q 013047 106 ERTVKVAFAEPLRE 119 (450)
Q Consensus 106 gr~i~v~~a~~~~~ 119 (450)
++.|+|+++.....
T Consensus 83 g~~l~v~~a~~~~~ 96 (114)
T 2do0_A 83 DRPMHVKMDERALP 96 (114)
T ss_dssp TEECEEEECSCCCC
T ss_pred CCEEEEEEcccCCC
Confidence 89999999875443
No 80
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=134.18 Aligned_cols=82 Identities=23% Similarity=0.328 Sum_probs=75.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||.++|+++|+++|++||. |++|+|+.++ +++++|||||+|++.++|++||+.||+..+ .
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~--i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~ 83 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGP--LTKVTICKDR--EGKPKSFGFVCFKHPESVSYAIALLNGIRL----Y 83 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSC--EEEEEEEECT--TSCEEEEEEEEESSTHHHHHHHHHHTTCEE----T
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCC--EEEEEEEECC--CCCCceEEEEEECCHHHHHHHHHHhCCCEE----C
Confidence 3456789999999999999999999999999 9999999987 589999999999999999999999999887 5
Q ss_pred CceEEEeecC
Q 013047 106 ERTVKVAFAE 115 (450)
Q Consensus 106 gr~i~v~~a~ 115 (450)
++.|+|+++.
T Consensus 84 g~~l~V~~a~ 93 (95)
T 2ywk_A 84 GRPINVSGPS 93 (95)
T ss_dssp TEECEEECCC
T ss_pred CCEEEEEEcC
Confidence 8999999885
No 81
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=135.91 Aligned_cols=86 Identities=22% Similarity=0.344 Sum_probs=78.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhh-cCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCC-cccCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKD-YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD-VVFGH 104 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~-~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~-~~~g~ 104 (450)
....++|||+|||.++|+++|+++|++ ||. |++|+|+.+. ++.++|||||+|.+.++|++||+.|++.. +
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~--v~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---- 77 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPS--CRGGKVVLDQ--TGVSKGYGFVKFTDELEQKRALTECQGAVGL---- 77 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTT--EEEEEEEECT--TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS----
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCC--eEEEEEEECC--CCCccceEEEEECCHHHHHHHHHHccCCccc----
Confidence 345789999999999999999999999 999 9999999986 89999999999999999999999999988 6
Q ss_pred CCceEEEeecCCCCCC
Q 013047 105 PERTVKVAFAEPLREP 120 (450)
Q Consensus 105 ~gr~i~v~~a~~~~~~ 120 (450)
.++.|+|.++.++...
T Consensus 78 ~g~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 78 GSKPVRLSVAIPKASR 93 (104)
T ss_dssp SSSCCCCCBCCCCCSC
T ss_pred CCEeEEEEEccCCCcC
Confidence 5899999999776554
No 82
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=2.9e-17 Score=135.03 Aligned_cols=86 Identities=24% Similarity=0.355 Sum_probs=77.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||+++|+++|+++|++|| |++|+|+.++. +++++|||||+|++.++|++|| .||+..+ .
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g---i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~-~l~g~~~----~ 81 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS---IRSVRLVRDKD-TDKFKGFCYVEFDEVDSLKEAL-TYDGALL----G 81 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC---EEEEEEEECSS-SCSEEEEEEEEESSHHHHHHHG-GGTTCEE----T
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC---ceEEEEeecCC-CCccceEEEEEECCHHHHHHHH-hhCCCeE----C
Confidence 445678999999999999999999999994 99999999875 8999999999999999999999 8999877 5
Q ss_pred CceEEEeecCCCCCC
Q 013047 106 ERTVKVAFAEPLREP 120 (450)
Q Consensus 106 gr~i~v~~a~~~~~~ 120 (450)
++.|+|.++.++...
T Consensus 82 g~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 82 DRSLRVDIAEGRKQD 96 (103)
T ss_dssp TEECEEEECCCCCCC
T ss_pred CeEEEEEEecCCCCC
Confidence 899999999876654
No 83
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3e-17 Score=136.37 Aligned_cols=87 Identities=23% Similarity=0.310 Sum_probs=77.3
Q ss_pred cCCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccC
Q 013047 24 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 103 (450)
Q Consensus 24 ~~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g 103 (450)
.......++|||+|||.++|+++|+++|++||. |++|+|+. ++.++|||||+|++.++|++||+.||+..+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--v~~~~i~~----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--- 86 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGA--IRDIDLKN----RRGGPPFAFVEFEDPRDAEDAVYGRDGYDY--- 86 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEECC----SSSSSCCEEEEESCHHHHHHHHHHHTTCEE---
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEEE----CCCCCcEEEEEECCHHHHHHHHHHcCCCEE---
Confidence 344556889999999999999999999999999 99999976 456899999999999999999999999877
Q ss_pred CCCceEEEeecCCCCCC
Q 013047 104 HPERTVKVAFAEPLREP 120 (450)
Q Consensus 104 ~~gr~i~v~~a~~~~~~ 120 (450)
.++.|+|+++.++...
T Consensus 87 -~g~~l~V~~a~~~~~~ 102 (109)
T 1x4a_A 87 -DGYRLRVEFPRSGRGT 102 (109)
T ss_dssp -TTEECEEECCCCCCCC
T ss_pred -CCeEEEEEEcccCCCC
Confidence 5899999999876553
No 84
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=136.99 Aligned_cols=87 Identities=22% Similarity=0.311 Sum_probs=79.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
...+.++|||+|||+++|+++|+++|++||+ |++|+|+.++. ++.++|||||+|++.++|++||+. ++..+ .
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--v~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~a~~~-~~~~~----~ 83 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGE--VVDCVIMKDKT-TNQSRGFGFVKFKDPNCVGTVLAS-RPHTL----D 83 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSC--EEEEEEEECSS-SCCEEEEEEEEESSTTHHHHHHHH-CSEEE----T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEeeCCC-CCCcceEEEEEECCHHHHHHHHHh-CCCeE----C
Confidence 4556899999999999999999999999999 99999999865 899999999999999999999998 88766 5
Q ss_pred CceEEEeecCCCCCC
Q 013047 106 ERTVKVAFAEPLREP 120 (450)
Q Consensus 106 gr~i~v~~a~~~~~~ 120 (450)
++.|+|.++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 84 GRNIDPKPCTPRGMQ 98 (105)
T ss_dssp TEEEBCCCSCCSSCC
T ss_pred CEEEEEEEccCCCCC
Confidence 899999999877654
No 85
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=5.8e-18 Score=159.71 Aligned_cols=80 Identities=10% Similarity=0.290 Sum_probs=74.4
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccC--ceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYG--DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G--~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
..++|||+||++++|+++|+++|++|| .|+.|.|+.++.+++++|||||+|++.++|++||++||++.|.++.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 999999999999999999999999999999999999999999999887776
Q ss_pred EE
Q 013047 205 RA 206 (450)
Q Consensus 205 ~~ 206 (450)
..
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 86
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=3.3e-17 Score=135.49 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||+++|+++|+++|++||. |++|+|+.++ +++++|||||+|.+.++|++||+.||+..+ .
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~ 96 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGT--LKKAAVHYDR--SGRSLGTADVHFERKADALKAMKQYNGVPL----D 96 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSC--EEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTCEE----T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEEECC--CCCcceEEEEEECCHHHHHHHHHHhCCCEe----C
Confidence 3456789999999999999999999999999 9999999987 899999999999999999999999999987 5
Q ss_pred CceEEEeecC
Q 013047 106 ERTVKVAFAE 115 (450)
Q Consensus 106 gr~i~v~~a~ 115 (450)
++.|+|+++.
T Consensus 97 g~~l~V~~a~ 106 (107)
T 3ulh_A 97 GRPMNIQLVT 106 (107)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEeC
Confidence 8999999874
No 87
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.7e-17 Score=135.48 Aligned_cols=83 Identities=11% Similarity=0.153 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCC--CCcccC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK--PDVVFG 103 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~--~~~~~g 103 (450)
.....++|||+|||+++|+++|+++|++||. |++|+|+++ ||||||+|++.++|++||+.|++ .++
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~--V~~v~i~~~-------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l--- 79 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGK--VTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVL--- 79 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCC--EEEEEEETT-------TTEEEEEESSHHHHHHHHHHHTTSCCEE---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--EEEEEEEcC-------CCEEEEEECCHHHHHHHHHHhccCCceE---
Confidence 3456889999999999999999999999999 999999975 49999999999999999998875 444
Q ss_pred CCCceEEEeecCCCCCCC
Q 013047 104 HPERTVKVAFAEPLREPD 121 (450)
Q Consensus 104 ~~gr~i~v~~a~~~~~~~ 121 (450)
.+++|+|.++.++....
T Consensus 80 -~Gr~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 80 -RGQPIYIQFSNHKELKT 96 (105)
T ss_dssp -TTEECCBCCCSSSSCCC
T ss_pred -CCEEEEEEEcCCCCCCc
Confidence 48999999998766543
No 88
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.6e-17 Score=130.67 Aligned_cols=84 Identities=18% Similarity=0.161 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||+++|+++|+++|++| . |++|+|+++. +++++|||||+|++.++|++||+ ||+..+ .
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~--i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~-~~g~~~----~ 75 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-K--PVAIRIVRNA--HGNKTGYIFVDFSNEEEVKQALK-CNREYM----G 75 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-C--CSEEEEEECT--TSCEEEEEEEECSSHHHHHHHHH-SCSEEE----T
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-C--ceEEEEEECC--CCCCceEEEEEECCHHHHHHHHH-hCCcee----C
Confidence 34567899999999999999999999999 7 9999999983 89999999999999999999999 999877 5
Q ss_pred CceEEEeecCCCCC
Q 013047 106 ERTVKVAFAEPLRE 119 (450)
Q Consensus 106 gr~i~v~~a~~~~~ 119 (450)
++.|+|.++.++.+
T Consensus 76 gr~i~v~~a~~~~~ 89 (91)
T 2dgw_A 76 GRYIEVFREKSGPS 89 (91)
T ss_dssp TEEEEEEEESSCCC
T ss_pred CcEEEEEECCcCCC
Confidence 89999999987643
No 89
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=3.1e-17 Score=130.83 Aligned_cols=81 Identities=23% Similarity=0.391 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
+.++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++|+ .||+..+ .++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~a~-~~~g~~~----~g~~ 76 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGS--VNRVTILCDKF-SGHPKGFAYIEFSDKESVRTSL-ALDESLF----RGRQ 76 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCC--EEEEEEEESCS-SSSCCEEEEEEESSTHHHHHHG-GGTTCEE----TTEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCC--EEEEEEEecCC-CCCcceEEEEEECCHHHHHHHH-hcCCCEE----CCcE
Confidence 3679999999999999999999999999 99999999865 8999999999999999999999 9999987 5899
Q ss_pred EEEeecCCC
Q 013047 109 VKVAFAEPL 117 (450)
Q Consensus 109 i~v~~a~~~ 117 (450)
|+|.++.+.
T Consensus 77 l~V~~a~~~ 85 (89)
T 3ucg_A 77 IKVIPKRTN 85 (89)
T ss_dssp CEEEETTTT
T ss_pred EEEEEccCC
Confidence 999998764
No 90
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=146.75 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcC--CCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G--~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
..++|||+|||+++|+++|+++|++|| . |++|+|+.|+. +++++|||||+|.+.++|++||+.||+..| .+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--v~~v~i~~d~~-tg~skGfaFV~f~~~~~A~~Ai~~lng~~~----~G 126 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYD--VVELKFAENRA-NGQSKGYAEVVVASENSVHKLLELLPGKVL----NG 126 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCC--EEEEEEEECTT-TCCEEEEEEEEESCHHHHHHHHHHSTTCEE----TT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCcc--EEEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHcCCCEE----CC
Confidence 468999999999999999999999999 8 99999999976 999999999999999999999999999987 58
Q ss_pred ceEEEeecCCC
Q 013047 107 RTVKVAFAEPL 117 (450)
Q Consensus 107 r~i~v~~a~~~ 117 (450)
+.|+|.++.++
T Consensus 127 r~l~V~~a~~~ 137 (156)
T 3n9u_C 127 EKVDVRPATRQ 137 (156)
T ss_dssp EECEEEECCHH
T ss_pred eEeEEEEcCCC
Confidence 99999998653
No 91
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-17 Score=135.42 Aligned_cols=84 Identities=26% Similarity=0.425 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
..++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++||+.||+..+ .++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~--i~~~~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~ 79 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGP--VVSFRLVYDRE-TGKPKGYGFCEYQDQETALSAMRNLNGREF----SGRA 79 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSC--CSEEEEEEETT-TTEEEEEEEEECSCHHHHHHHHHHSSSBSC----SSSC
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCC--eeEEEEEeCCC-CCccceEEEEEECCHHHHHHHHHHhCCCee----CCcE
Confidence 4689999999999999999999999999 99999999865 899999999999999999999999999887 5899
Q ss_pred EEEeecCCCCC
Q 013047 109 VKVAFAEPLRE 119 (450)
Q Consensus 109 i~v~~a~~~~~ 119 (450)
|+|.++.++..
T Consensus 80 l~v~~a~~~~~ 90 (104)
T 1p1t_A 80 LRVDNAASEKN 90 (104)
T ss_dssp BEEEETTCTTH
T ss_pred EEEEeCCCccc
Confidence 99999976554
No 92
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=133.49 Aligned_cols=81 Identities=10% Similarity=0.224 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
...+++|||+|||.++|+++|+++|++||. |++|+|+++ ||||||+|++.++|++||+.|++..+.+. +
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~--V~~v~i~~~-------kg~AFVef~~~~~A~~Av~~ln~~~~~i~--G 86 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGP--ISYVVVMPK-------KRQALVEFEDVLGACNAVNYAADNQIYIA--G 86 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCEEET--T
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCC--EEEEEEEcC-------CCEEEEEECCHHHHHHHHHHhcCCCceeC--C
Confidence 346889999999999999999999999999 999999863 48999999999999999999998875443 8
Q ss_pred ceEEEeecCCCC
Q 013047 107 RTVKVAFAEPLR 118 (450)
Q Consensus 107 r~i~v~~a~~~~ 118 (450)
++|.|++++.++
T Consensus 87 r~i~V~~S~~k~ 98 (100)
T 3r27_A 87 HPAFVNYSTSQK 98 (100)
T ss_dssp EEEEEEECSCSC
T ss_pred cEEEEEeccccc
Confidence 999999997654
No 93
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.9e-17 Score=135.30 Aligned_cols=89 Identities=20% Similarity=0.365 Sum_probs=79.0
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCC
Q 013047 25 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 104 (450)
Q Consensus 25 ~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~ 104 (450)
......++|||+|||+++|+++|+++|++|| |++|+|+.++..+++++|||||+|++.++|++|| .|++..+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G---i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---- 81 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN---ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---- 81 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC---EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE----
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC---ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe----
Confidence 3445678999999999999999999999998 9999999987622999999999999999999999 9999887
Q ss_pred CCceEEEeecCCCCCCC
Q 013047 105 PERTVKVAFAEPLREPD 121 (450)
Q Consensus 105 ~gr~i~v~~a~~~~~~~ 121 (450)
.++.|+|+++.++....
T Consensus 82 ~g~~l~V~~a~~~~~~~ 98 (104)
T 1wi8_A 82 GNKRIRVDVADQAQDKD 98 (104)
T ss_dssp TTEECEEEECCCCCCCC
T ss_pred CCcEEEEEEccCCCCCC
Confidence 58999999998776543
No 94
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=4.4e-17 Score=129.55 Aligned_cols=81 Identities=23% Similarity=0.414 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
...+.++|||+|||.++|+++|+++|++||. |++|+|+.++. +++++|||||+|.+.++|++|++. ++..+ .
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~-~~~~~----~ 78 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE--VVDCTIKMDPN-TGRSRGFGFILFKDAASVEKVLDQ-KEHRL----D 78 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSC--EEEEEEEECTT-TCCEEEEEEEEESSTHHHHHHHHS-SCEEE----T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCC--EEEEEEeecCC-CCccccEEEEEECCHHHHHHHHHh-CCCEE----C
Confidence 3456889999999999999999999999999 99999999875 899999999999999999999965 55555 5
Q ss_pred CceEEEeec
Q 013047 106 ERTVKVAFA 114 (450)
Q Consensus 106 gr~i~v~~a 114 (450)
++.|+|++|
T Consensus 79 g~~i~v~~A 87 (87)
T 3s7r_A 79 GRVIDPKKA 87 (87)
T ss_dssp TEEEEEEEC
T ss_pred CEEEEEEeC
Confidence 899999875
No 95
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.2e-17 Score=136.16 Aligned_cols=82 Identities=21% Similarity=0.270 Sum_probs=74.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||+++|+++|+++|++||+ |++|.|++++ +++++|||||+|++.++|++||+ +++..+ .
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~--v~~v~i~~d~--~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~----~ 77 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQ--VLNIQMRRTL--HKAFKGSIFVVFDSIESAKKFVE-TPGQKY----K 77 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSC--EEEEEEECCC--TTSCCCEEEEEESSHHHHHHHHT-SSCCCC----T
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCC--EEEEEEEECC--CCCCccEEEEEECCHHHHHHHHH-cCCCEE----C
Confidence 3455789999999999999999999999999 9999999986 49999999999999999999998 888877 5
Q ss_pred CceEEEeecCC
Q 013047 106 ERTVKVAFAEP 116 (450)
Q Consensus 106 gr~i~v~~a~~ 116 (450)
++.|.|.++..
T Consensus 78 gr~l~V~~~~~ 88 (103)
T 1s79_A 78 ETDLLILFKDD 88 (103)
T ss_dssp TTTCEEEEHHH
T ss_pred CEEEEEEEchH
Confidence 89999998753
No 96
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.71 E-value=3.7e-17 Score=139.39 Aligned_cols=83 Identities=22% Similarity=0.330 Sum_probs=76.9
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....++|||+|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+.||+..|.++.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999887776
Q ss_pred EEe
Q 013047 205 RAR 207 (450)
Q Consensus 205 ~~~ 207 (450)
...
T Consensus 99 a~~ 101 (126)
T 3ex7_B 99 CFV 101 (126)
T ss_dssp SEE
T ss_pred ecC
Confidence 543
No 97
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.5e-17 Score=131.86 Aligned_cols=87 Identities=18% Similarity=0.304 Sum_probs=76.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
...+.++|||+|||+++|+++|+++|++||. |++|+|+.++. +++++|||||+|++.++|++||+. ...+ .
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~--~~~~----~ 81 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGE--VLMVQVKKDLK-TGHSKGFGFVRFTEYETQVKVMSQ--RHMI----D 81 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSC--EEEEEEEECSS-SCSEEEEEEEEESSHHHHHHHHHS--CEEE----T
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCC--eEEEEEEecCC-CCCccceEEEEECCHHHHHHHHHc--CCee----C
Confidence 3456789999999999999999999999999 99999999875 899999999999999999999984 3333 4
Q ss_pred CceEEEeecCCCCCCC
Q 013047 106 ERTVKVAFAEPLREPD 121 (450)
Q Consensus 106 gr~i~v~~a~~~~~~~ 121 (450)
++.|+|.++.++.+..
T Consensus 82 g~~l~v~~a~~~~~~~ 97 (103)
T 2cqg_A 82 GRWCDCKLPNSKQSQD 97 (103)
T ss_dssp TEEEEEECCCTTCCCC
T ss_pred CeEEEEEecCCCCcCC
Confidence 8999999998876543
No 98
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.4e-17 Score=134.69 Aligned_cols=89 Identities=19% Similarity=0.335 Sum_probs=78.4
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCC
Q 013047 25 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 104 (450)
Q Consensus 25 ~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~ 104 (450)
....+.++|||+|||.++|+++|+++|++||. |++|+|+.++ ++.++|||||+|.+.++|++||+.||+..+....
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~~~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 95 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQ--VISTRILRDS--SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 95 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSC--EEEEEEEECS--SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCT
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--EEEEEEEECC--CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCc
Confidence 44556899999999999999999999999999 9999999986 8999999999999999999999999998773211
Q ss_pred ----CCceEEEeecCCC
Q 013047 105 ----PERTVKVAFAEPL 117 (450)
Q Consensus 105 ----~gr~i~v~~a~~~ 117 (450)
.++.|.|.|+.+.
T Consensus 96 ~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 96 GVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp TSCCCSSCBEEEECCCS
T ss_pred cccCCCCceeEEccCCC
Confidence 3688999998754
No 99
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-17 Score=137.66 Aligned_cols=93 Identities=13% Similarity=0.191 Sum_probs=80.5
Q ss_pred cccccCCCCCCCeEEEcCCCCCCcHHHHH---HHHhhcCCCCeeEEEEEeCCCC--CCCeeeEEEEEeCCHHHHHHHHHH
Q 013047 20 KRCGTAPSEDNDTLFVGNICNTWTKEAIK---QKLKDYGVEGVENINLVSDIQH--EGLSRGFAFVMFSCHVDAMAAYKR 94 (450)
Q Consensus 20 k~~~~~~~~~~~~lyV~nLp~~~te~dL~---~~F~~~G~~~V~~i~l~~d~~~--tg~skG~aFVeF~~~edA~~Al~~ 94 (450)
..+........++|||+|||+++|+++|+ ++|++||+ |++|+|+.+... ++.++|||||+|++.++|++||+.
T Consensus 5 s~~~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~--i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ 82 (111)
T 2cpi_A 5 SSGASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGK--IHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQC 82 (111)
T ss_dssp SSCSCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSC--EEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHH
T ss_pred CCCccccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCC--EEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHH
Confidence 34444556678899999999999999999 99999999 999999987541 236679999999999999999999
Q ss_pred hCCCCcccCCCCceEEEeecCCCC
Q 013047 95 LQKPDVVFGHPERTVKVAFAEPLR 118 (450)
Q Consensus 95 l~~~~~~~g~~gr~i~v~~a~~~~ 118 (450)
||+..+ .++.|+|.+|.++.
T Consensus 83 lng~~~----~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 83 VNNVVV----DGRTLKASLGTTKY 102 (111)
T ss_dssp HTTEEE----TTEEEEEESCCCCS
T ss_pred hCCCEE----CCEEEEEEeccccc
Confidence 999887 58999999998765
No 100
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.2e-17 Score=136.01 Aligned_cols=80 Identities=24% Similarity=0.465 Sum_probs=73.7
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....++|||+|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+.|++ .|.++.|+|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34668999999999999999999999999999999999999999999999999999999999999998 89998766655
Q ss_pred E
Q 013047 205 R 205 (450)
Q Consensus 205 ~ 205 (450)
.
T Consensus 93 a 93 (116)
T 2cqd_A 93 A 93 (116)
T ss_dssp S
T ss_pred c
Confidence 4
No 101
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.1e-17 Score=135.00 Aligned_cols=84 Identities=19% Similarity=0.205 Sum_probs=74.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||+++|+++|+++|++||+ | +|+|+.++ +++++|||||+|++.++|++||+ +|+..+ .
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~--~-~v~i~~d~--~g~~~G~afV~F~~~~~a~~Al~-~~~~~~----~ 80 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP--M-RVHIEIGP--DGRVTGEADVEFATHEDAVAAMA-KDKANM----Q 80 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC--S-EEEEEESS--SSCEEEEEEEECSSSHHHHHHHT-TSSCCS----S
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc--e-EEEEEECC--CCCEeeEEEEEECCHHHHHHHHH-hCCCeE----C
Confidence 3456789999999999999999999999996 5 99999986 89999999999999999999994 788766 5
Q ss_pred CceEEEeecCCCCC
Q 013047 106 ERTVKVAFAEPLRE 119 (450)
Q Consensus 106 gr~i~v~~a~~~~~ 119 (450)
++.|+|.++.+...
T Consensus 81 gr~i~V~~~~~~~~ 94 (102)
T 1wez_A 81 HRYVELFLNSTAGT 94 (102)
T ss_dssp SSCCEEEEECCCCC
T ss_pred CcEEEEEECCCCCC
Confidence 89999998875543
No 102
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.8e-18 Score=133.36 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
+...++|||+|||+++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++|++.||+..+ .+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~--i~~~~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g 74 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGK--IVSTKAILDKT-TNKCKGYGFVDFDSPSAAQKAVTALKASGV----QA 74 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSC--EEEEEEECCSS-SCSCCSEEEEEESCHHHHHHHHHHHHHHTC----CE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEEecCC-CCCcCcEEEEEECCHHHHHHHHHHhcCCeE----ee
Confidence 356889999999999999999999999999 99999999875 899999999999999999999999999877 47
Q ss_pred ceEEEeec
Q 013047 107 RTVKVAFA 114 (450)
Q Consensus 107 r~i~v~~a 114 (450)
+.|+|.++
T Consensus 75 ~~~~~~~~ 82 (85)
T 1x4e_A 75 QMAKQSGP 82 (85)
T ss_dssp ESCCSSCC
T ss_pred EEEeecCC
Confidence 77777654
No 103
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-17 Score=134.77 Aligned_cols=83 Identities=22% Similarity=0.225 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
...++|||+|||+++|+++|+++|++||. |++|+++.++. +++++|||||+|.+.++|++||+.||+..+ .++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~--v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~----~g~ 85 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQV--IPGSVCLKYNE-KGMPTGEAMVAFESRDEATAAVIDLNDRPI----GSR 85 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCC--CTTTCEEEECS-SSCEEEEEEEEESCHHHHHHHHHHTTTCEE----TTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCC--ccceEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCee----CCe
Confidence 44689999999999999999999999999 99888888765 899999999999999999999999999877 589
Q ss_pred eEEEeecCCC
Q 013047 108 TVKVAFAEPL 117 (450)
Q Consensus 108 ~i~v~~a~~~ 117 (450)
.|+|+++...
T Consensus 86 ~l~V~~a~~~ 95 (98)
T 2cqp_A 86 KVKLVLGSGP 95 (98)
T ss_dssp ECEEEESSCS
T ss_pred EEEEEEcCCC
Confidence 9999998643
No 104
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.4e-17 Score=131.83 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHH----HHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCccc
Q 013047 27 SEDNDTLFVGNICNTWTKEAIK----QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 102 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~----~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~ 102 (450)
..+.++|||+|||+++|+++|+ ++|++||. |++|+|+.++. + +|||||+|++.++|++||+.||+..+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~--v~~v~i~~~~~-~---rg~afV~f~~~~~A~~Ai~~l~g~~~-- 77 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGK--VKSVELSPHTD-Y---QLKAVVQMENLQDAIGAVNSLHRYKI-- 77 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSC--EEEEEECSCCS-T---TCCEEEEESSHHHHHHHHHHHTTEEE--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCc--EEEEEEEeCCC-C---CeEEEEEECCHHHHHHHHHHhCCCEE--
Confidence 3456799999999999999999 99999999 99999999864 3 89999999999999999999999887
Q ss_pred CCCCceEEEeecCCCCC
Q 013047 103 GHPERTVKVAFAEPLRE 119 (450)
Q Consensus 103 g~~gr~i~v~~a~~~~~ 119 (450)
.++.|+|+++.+...
T Consensus 78 --~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 78 --GSKKILVSLATGASG 92 (96)
T ss_dssp --TTEEEEEEECCCSSC
T ss_pred --CCeEEEEEEcCCCCC
Confidence 589999999976544
No 105
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=143.84 Aligned_cols=87 Identities=29% Similarity=0.454 Sum_probs=78.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeE--EEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCC----C
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVEN--INLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP----D 99 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~--i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~----~ 99 (450)
....+++|||+|||+++|+++|+++|++||. |+. |+|++|+. |+++||||||+|++. +|++||+.||+. .
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~--v~~~~v~i~~d~~-tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAV--LSSSNVRVIKDKQ-TQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCC--CCTTTEECCBCSS-SSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCC--cceeeEEEEEcCC-CCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3456789999999999999999999999999 966 99999976 899999999999999 999999999998 6
Q ss_pred cccCCCCceEEEeecCCCCCC
Q 013047 100 VVFGHPERTVKVAFAEPLREP 120 (450)
Q Consensus 100 ~~~g~~gr~i~v~~a~~~~~~ 120 (450)
+ .++.|+|+++.+++..
T Consensus 95 ~----~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 95 I----DGKTINVEFAKGSKRD 111 (131)
T ss_dssp G----GGCCCCCEECCCSCCC
T ss_pred C----CCEEEEEEECCCCCCC
Confidence 6 5899999999876543
No 106
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.70 E-value=3.7e-17 Score=136.11 Aligned_cols=86 Identities=21% Similarity=0.344 Sum_probs=73.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
...+.++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++||+.++ ..+ .
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~--i~~v~i~~~~~-tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l----~ 92 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGE--VKECLVMRDPL-TKRSRGFGFVTFMDQAGVDKVLAQSR-HEL----D 92 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSC--EEEEEECCCTT-TCCCTTCEEEEESSHHHHHHHHHSSC-EEE----T
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCC--eEEEEEEECCC-CCCcCcEEEEEECCHHHHHHHHHHCC-CcC----C
Confidence 4456889999999999999999999999999 99999999875 89999999999999999999999875 444 4
Q ss_pred CceEEEeecCCCCC
Q 013047 106 ERTVKVAFAEPLRE 119 (450)
Q Consensus 106 gr~i~v~~a~~~~~ 119 (450)
++.|+|.++.++..
T Consensus 93 g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 93 SKTIDPKVAFPRRA 106 (109)
T ss_dssp TEEEEEEECCCCCC
T ss_pred CEEEEEEEccCCCC
Confidence 89999999987654
No 107
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=5.5e-17 Score=128.16 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=67.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
.+..|||+||++.+||++|+++|.+||+ |++++|+. +||||||||.+.++|++|++.||+..+ .+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~--V~~~~l~~-------~kGfaFVey~~~~eA~~Ai~~Ln~~~l----~gr~ 72 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGP--LVSFHPYL-------NQGIALCKYTTREEANKAQMALNNCVL----ANTT 72 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSC--EEEEEEET-------TTTEEEEEESSHHHHHHHHHHHTTEEE----TTEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCC--EEEEEEcC-------CCcEEEEEECCHHHHHHHHHHhcCCEE----CCcE
Confidence 3678999999999999999999999999 99999975 469999999999999999999999887 5899
Q ss_pred EEEeec
Q 013047 109 VKVAFA 114 (450)
Q Consensus 109 i~v~~a 114 (450)
|+|++|
T Consensus 73 I~V~~A 78 (89)
T 2wbr_A 73 IFAESP 78 (89)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 999876
No 108
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.7e-17 Score=134.30 Aligned_cols=82 Identities=16% Similarity=0.227 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCC-CCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 27 SEDNDTLFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 27 ~~~~~~lyV~nLp~-~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
...+++|||+|||+ ++|+++|+++|++||. |++|+|+++ +|||||+|++.++|++||+.|++....+ .
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~--V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~--~ 80 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGV--ISNHLILNK-------INEAFIEMATTEDAQAAVDYYTTTPALV--F 80 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSC--EEEEEECSS-------SSCEEEEESSHHHHHHHHHHHHHSCCEE--T
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCC--EEEEEEEcC-------CCEEEEEECCHHHHHHHHHHHcCCCceE--C
Confidence 34688999999999 9999999999999999 999999875 3899999999999999999998654222 4
Q ss_pred CceEEEeecCCCCC
Q 013047 106 ERTVKVAFAEPLRE 119 (450)
Q Consensus 106 gr~i~v~~a~~~~~ 119 (450)
+++|.|.+|...+.
T Consensus 81 Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 81 GKPVRVHLSQKYKR 94 (102)
T ss_dssp TEECEEEEECCCTT
T ss_pred CcEEEEEECCCCCC
Confidence 89999999986554
No 109
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.70 E-value=1.6e-17 Score=134.28 Aligned_cols=80 Identities=23% Similarity=0.228 Sum_probs=73.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
..++|||+|||+++|+++|+++|++||. |++|+++.++. +++++|||||+|.+.++|++||+.||+..+ .++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~----~gr~ 86 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQV--IPGSVCLKYNE-KGMPTGEAMVAFESRDEATAAVIDLNDRPI----GSRK 86 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCB--CTTCCEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEE----TTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC--ccceEEEEeCC-CCCEeeEEEEEECCHHHHHHHHHHhCCCeE----CCcE
Confidence 4689999999999999999999999998 99899998765 899999999999999999999999999987 5899
Q ss_pred EEEeecC
Q 013047 109 VKVAFAE 115 (450)
Q Consensus 109 i~v~~a~ 115 (450)
|+|+++.
T Consensus 87 l~v~~a~ 93 (95)
T 2ek1_A 87 VKLSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEecc
Confidence 9999875
No 110
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=129.29 Aligned_cols=79 Identities=24% Similarity=0.420 Sum_probs=74.4
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
..++|||+|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+.||+..|.++.|+|.+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 5679999999999999999999999999999999999989999999999999999999999999999999998766553
No 111
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.4e-17 Score=131.89 Aligned_cols=79 Identities=20% Similarity=0.389 Sum_probs=74.1
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+.||+..|.++.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4568999999999999999999999999999999999998999999999999999999999999999999998766655
No 112
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.69 E-value=2.5e-16 Score=132.02 Aligned_cols=81 Identities=19% Similarity=0.368 Sum_probs=75.1
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....++|||+|||+++++++|+++|++||.|+.|.|+.++.++.+++||||+|++.++|++||+.||+..|.++.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999998766655
Q ss_pred E
Q 013047 205 R 205 (450)
Q Consensus 205 ~ 205 (450)
.
T Consensus 92 a 92 (115)
T 2dgo_A 92 A 92 (115)
T ss_dssp S
T ss_pred c
Confidence 4
No 113
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.69 E-value=2.4e-17 Score=138.89 Aligned_cols=82 Identities=23% Similarity=0.338 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
..+.++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++||+.||+..+ .+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~~~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g 109 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGN--VISAKVFIDKQ-TSLSKCFGFVSFDNPDSAQVAIKAMNGFQV----GT 109 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCE--EEEEEECCCSS-SSCCCCEEEEEEESSHHHHHHHHHCCCCEE----TT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--EEEEEEEeCCC-CCCcCcEEEEEECCHHHHHHHHHHcCCCEE----CC
Confidence 345689999999999999999999999999 99999999865 899999999999999999999999999887 58
Q ss_pred ceEEEeecC
Q 013047 107 RTVKVAFAE 115 (450)
Q Consensus 107 r~i~v~~a~ 115 (450)
+.|+|++++
T Consensus 110 ~~l~V~~ak 118 (118)
T 2khc_A 110 KRLKVQLKK 118 (118)
T ss_dssp EECCEEEC-
T ss_pred EEEEEEecC
Confidence 999999873
No 114
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=2.4e-17 Score=153.56 Aligned_cols=125 Identities=22% Similarity=0.277 Sum_probs=96.0
Q ss_pred hHHHHHhhCCCcccCCcccccCCCC--------CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCee
Q 013047 4 LFLIYILIFPLKQICGKRCGTAPSE--------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75 (450)
Q Consensus 4 ~~~~~le~~~~~~~~~k~~~~~~~~--------~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~sk 75 (450)
-...+|+.+....+.++.+.+.... ..++|||+|||+++|+++|+++|++||. |++|+|++| ++.++
T Consensus 69 ~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~--i~~~~i~~d---~~~~~ 143 (213)
T 4f02_A 69 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN--ILSCKVVCD---ENGSK 143 (213)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEEE---TTEEE
T ss_pred HHHHHHHHhhhhhcCCcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCC--eEEEEeecc---CCCCc
Confidence 3456788888888888888775543 3579999999999999999999999999 999999998 45689
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCCCCccccCCccEEEEcCCC
Q 013047 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 137 (450)
Q Consensus 76 G~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp 137 (450)
|||||+|.+.++|++||++||+..| .++.|+|.++.++++.........+.++..++|
T Consensus 144 g~~fV~f~~~~~a~~Ai~~lng~~~----~g~~i~V~~a~~~~~~~~~~~~~~~~~~p~~~P 201 (213)
T 4f02_A 144 GYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAELGARAKEFYPYDVP 201 (213)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEE----TTEECEEEECCCHHHHHHHHC------------
T ss_pred eEEEEEeCCHHHHHHHHHHhCCCEE----CCEEEEEEEcCCCcccchhhhcccCCCCCCCCC
Confidence 9999999999999999999999887 589999999987654433333333444444444
No 115
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.6e-17 Score=135.49 Aligned_cols=86 Identities=24% Similarity=0.358 Sum_probs=77.3
Q ss_pred ccCCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCccc
Q 013047 23 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 102 (450)
Q Consensus 23 ~~~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~ 102 (450)
........++|||+|||.++|+++|+++|++||. |++|+|+.+. +.++|||||+|.+.++|++|++.|++..+
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~~---~~~kg~afV~f~~~~~A~~Ai~~l~g~~~-- 94 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGK--ILDVEIIFNE---RGSKGFGFVTFENSADADRAREKLHGTVV-- 94 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCC--CSCEEECCBT---TBCTTEEEEECCCSHHHHHHHHHHTTCEE--
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCC--EEEEEEEECC---CCCceEEEEEECCHHHHHHHHHHcCCCEE--
Confidence 3445566899999999999999999999999999 9999999984 45899999999999999999999999887
Q ss_pred CCCCceEEEeecCCC
Q 013047 103 GHPERTVKVAFAEPL 117 (450)
Q Consensus 103 g~~gr~i~v~~a~~~ 117 (450)
.++.|+|.++.++
T Consensus 95 --~g~~l~V~~a~~~ 107 (109)
T 2err_A 95 --EGRKIEVNNATAR 107 (109)
T ss_dssp --TTEECEEEECCCS
T ss_pred --CCEEEEEEECCCC
Confidence 5899999999764
No 116
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=2.6e-17 Score=127.10 Aligned_cols=75 Identities=24% Similarity=0.397 Sum_probs=69.7
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEE
Q 013047 32 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKV 111 (450)
Q Consensus 32 ~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v 111 (450)
+|||+|||.++|+++|+++|++||+ |++|+|+.++. +++++|||||+|++.++|++|++ |++..+ .++.|+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~a~~-~~~~~~----~g~~l~v 72 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGK--VDDAMLMFDKT-TNRHRGFGFVTFESEDIVEKVCE-IHFHEI----NNKMVEC 72 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSC--CSEECCCBCSS-STTSCBEEEEECSCHHHHHHHHS-SSCCCS----SSCCCEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCC--EEEEEEEecCC-CCCcCcEEEEEECCHHHHHHHHH-CCCCEE----CCEEEEE
Confidence 5999999999999999999999999 99999999875 89999999999999999999997 898877 5899999
Q ss_pred eec
Q 013047 112 AFA 114 (450)
Q Consensus 112 ~~a 114 (450)
++|
T Consensus 73 ~~A 75 (75)
T 2mss_A 73 KKA 75 (75)
T ss_dssp ECC
T ss_pred EeC
Confidence 875
No 117
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.3e-17 Score=131.61 Aligned_cols=82 Identities=18% Similarity=0.428 Sum_probs=76.6
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+.||+..|.++.|+|.+.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35689999999999999999999999999999999999989999999999999999999999999999999999887776
Q ss_pred Ee
Q 013047 206 AR 207 (450)
Q Consensus 206 ~~ 207 (450)
..
T Consensus 90 ~~ 91 (102)
T 1x5s_A 90 GK 91 (102)
T ss_dssp EC
T ss_pred CC
Confidence 43
No 118
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=129.36 Aligned_cols=79 Identities=20% Similarity=0.490 Sum_probs=73.8
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+ |++..|.++.|+|.+.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 356899999999999999999999999999999999999899999999999999999999998 9999999998766654
No 119
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=130.41 Aligned_cols=79 Identities=18% Similarity=0.269 Sum_probs=74.0
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
..++|||+|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+.||+..|.++.|.|.+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5689999999999999999999999999999999999889999999999999999999999999999999997666554
No 120
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=126.79 Aligned_cols=79 Identities=19% Similarity=0.345 Sum_probs=74.1
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
..++|||+|||.++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++|++.||+..|.++.|+|.+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4579999999999999999999999999999999999889999999999999999999999999999999998777665
No 121
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=131.07 Aligned_cols=82 Identities=22% Similarity=0.342 Sum_probs=76.4
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....++|||+|||+++++++|+++|++||.|+.|.|+.+..+++++|||||+|++.++|++||++||+..|.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999877766
Q ss_pred EE
Q 013047 205 RA 206 (450)
Q Consensus 205 ~~ 206 (450)
..
T Consensus 100 a~ 101 (106)
T 1p27_B 100 CF 101 (106)
T ss_dssp SE
T ss_pred ec
Confidence 54
No 122
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=6.5e-17 Score=132.86 Aligned_cols=80 Identities=18% Similarity=0.317 Sum_probs=75.2
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+.||+..|.++.|.|.+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999998777664
No 123
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.69 E-value=1.2e-16 Score=125.66 Aligned_cols=77 Identities=13% Similarity=0.400 Sum_probs=72.7
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
.+|||+|||.++++++|+++|++||.|..|.|+.+..+++++++|||+|++.++|++|++.||+..|.++.|+|.+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 78 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEec
Confidence 58999999999999999999999999999999999999999999999999999999999999999999987666554
No 124
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.69 E-value=1.8e-17 Score=132.96 Aligned_cols=78 Identities=10% Similarity=0.310 Sum_probs=70.6
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccC--ceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYG--DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G--~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
.+|||+||++++++++|+++|++|| .|+.|.|+.++.+++++|||||+|++.++|++||+.||+..|.|+.|+|....
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999987665543
No 125
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=1.1e-16 Score=136.20 Aligned_cols=86 Identities=21% Similarity=0.281 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
....++|||+|||.++|+++|+++|++||. |++|+|+.+. +++++|||||+|++.++|++||+.|++..+ .+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--v~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~----~g 103 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGT--LKKAAVDYDR--SGRSLGTADVHFERRADALKAMKQYKGVPL----DG 103 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSC--CSEEEEECCS--SSSCCSEEEEEESSHHHHHHHHHHHTTEES----SS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEEECC--CCCEeeEEEEEECCHHHHHHHHHHcCCCEE----CC
Confidence 345789999999999999999999999999 9999999986 899999999999999999999999999877 58
Q ss_pred ceEEEeecCCCCCC
Q 013047 107 RTVKVAFAEPLREP 120 (450)
Q Consensus 107 r~i~v~~a~~~~~~ 120 (450)
+.|+|.+|.+....
T Consensus 104 ~~l~V~~a~~~~~~ 117 (124)
T 2kt5_A 104 RPMDIQLVASQIDL 117 (124)
T ss_dssp CEEEEEEECCTTCC
T ss_pred cEEEEEEeCCCCCC
Confidence 99999999775543
No 126
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.69 E-value=9.8e-17 Score=134.56 Aligned_cols=80 Identities=19% Similarity=0.364 Sum_probs=74.3
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+.||+..|.++.|+|.+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 35579999999999999999999999999999999999989999999999999999999999999999999987666553
No 127
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.4e-17 Score=127.82 Aligned_cols=76 Identities=21% Similarity=0.365 Sum_probs=70.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEE
Q 013047 31 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 110 (450)
Q Consensus 31 ~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~ 110 (450)
++|||+|||.++|+++|+++|++||. |.+|.|+.++. +++++|||||+|.+.++|++|++.++ ..+ .++.|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~--v~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~a~~~~~-~~~----~g~~l~ 72 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGE--VKECLVMRDPL-TKRSRGFGFVTFMDQAGVDKVLAQSR-HEL----DSKTID 72 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSC--CCCEEEECCCC-SSSCSSEEEECCCCTTHHHHHHHTTT-CCC----SSCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCC--EEEEEEecCCC-CCCcCceEEEEEcCHHHHHHHHHhCC-Ccc----CCEEEE
Confidence 58999999999999999999999999 99999999865 89999999999999999999999999 655 589999
Q ss_pred Eeec
Q 013047 111 VAFA 114 (450)
Q Consensus 111 v~~a 114 (450)
|++|
T Consensus 73 v~~a 76 (77)
T 1uaw_A 73 PKVA 76 (77)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9886
No 128
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=133.56 Aligned_cols=78 Identities=21% Similarity=0.382 Sum_probs=73.4
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
..++|||+|||+++++++|+++|++||.|+.|.|+.+. ++++++||||+|++.++|++||+.||+..|.++.|+|.+.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 56799999999999999999999999999999999997 8999999999999999999999999999999998777664
No 129
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.2e-17 Score=133.12 Aligned_cols=84 Identities=24% Similarity=0.290 Sum_probs=74.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeE-EEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVEN-INLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 104 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~-i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~ 104 (450)
.....++|||+|||+++|+++|+++|++||. |++ |+|+.+. +++++|||||+|++.++|++||+. ++..+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~--v~~~v~i~~~~--~g~~~G~afV~F~~~~~a~~A~~~-~~~~~---- 81 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEI--VPNGMTLPVDF--QGRSTGEAFVQFASQEIAEKALKK-HKERI---- 81 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCE--EEEEEECCBCS--SSCBCSEEEEEESSHHHHHHHHTT-TTCCS----
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--cceeEEEEECC--CCCcceEEEEEECCHHHHHHHHHh-Ccchh----
Confidence 3456789999999999999999999999998 987 8888883 899999999999999999999987 77766
Q ss_pred CCceEEEeecCCCC
Q 013047 105 PERTVKVAFAEPLR 118 (450)
Q Consensus 105 ~gr~i~v~~a~~~~ 118 (450)
.++.|+|.++..+.
T Consensus 82 ~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 82 GHRYIEIFKSSRAE 95 (104)
T ss_dssp SSSCCEEEEECTTT
T ss_pred CCcEEEEEECCHHH
Confidence 58999999886543
No 130
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=131.59 Aligned_cols=84 Identities=12% Similarity=0.170 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
...+++|||+|||+++|+++|+++|++||. |++|.|+++ ||||||+|++.++|++||+.|++..+.+ .+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~--V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~i--~G 80 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGT--ICYVMMMPF-------KRQALVEFENIDSAKECVTFAADVPVYI--AG 80 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSC--EEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCBS--SS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCC--EEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceE--CC
Confidence 345789999999999999999999999999 999999864 5899999999999999999887654323 48
Q ss_pred ceEEEeecCCCCCCC
Q 013047 107 RTVKVAFAEPLREPD 121 (450)
Q Consensus 107 r~i~v~~a~~~~~~~ 121 (450)
+.|+|.++..+....
T Consensus 81 r~l~V~~a~~~~~~~ 95 (104)
T 1wex_A 81 QQAFFNYSTSKRITR 95 (104)
T ss_dssp SBCEEEECSSSSCCC
T ss_pred EEEEEEEccCccccC
Confidence 999999998765543
No 131
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-17 Score=134.84 Aligned_cols=79 Identities=19% Similarity=0.371 Sum_probs=71.4
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCc--eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe----ecCCee
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGD--VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE----FSDGNS 200 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~--v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~----~~g~~i 200 (450)
.-.+|||+|||+++|+++|+++|++||. |.+|.|+.|+.+++++|||||+|++.++|++||+.||+.+ |+|+.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3468999999999999999999999995 6789999999999999999999999999999999999974 889876
Q ss_pred EEEEE
Q 013047 201 KVKLR 205 (450)
Q Consensus 201 ~v~v~ 205 (450)
.|.++
T Consensus 88 ~V~~A 92 (95)
T 2lkz_A 88 GVDFA 92 (95)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 66554
No 132
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.68 E-value=3.5e-17 Score=141.67 Aligned_cols=86 Identities=28% Similarity=0.388 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
.+.++|||+|||+++|+++|+++|++||. |++|+|+.++. ++.++|||||+|++.++|++||+.||+..+ .++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~--i~~v~i~~~~~-~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i----~g~ 117 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGR--VGDVYIPRDRY-TKESRGFAFVRFHDKRDAEDAMDAMDGAVL----DGR 117 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSC--CSEEECCCCSS-SSSCCSCCEEECSCHHHHHHHHTTTTTCCS----SSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC--EEEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHcCCCEE----CCE
Confidence 34789999999999999999999999999 99999999875 899999999999999999999999999987 589
Q ss_pred eEEEeecCCCCCC
Q 013047 108 TVKVAFAEPLREP 120 (450)
Q Consensus 108 ~i~v~~a~~~~~~ 120 (450)
.|+|.++.++...
T Consensus 118 ~l~V~~a~~~~~~ 130 (135)
T 2lea_A 118 ELRVQMARYGRPP 130 (135)
T ss_dssp CCEEEECCCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876543
No 133
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.4e-17 Score=138.36 Aligned_cols=83 Identities=20% Similarity=0.161 Sum_probs=74.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCe-eEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGV-ENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 104 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V-~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~ 104 (450)
...+.++|||+|||+++|+++|+++|++||. | ++|+|+.|+ +++++|||||+|++.++|++||+. |+..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~--v~~~v~i~~d~--~g~~~G~afV~F~~~~~a~~Al~~-~~~~~---- 81 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPV--DENAVHVLVDN--NGQGLGQALVQFKNEDDARKSERL-HRKKL---- 81 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCC--CSTTEEECCCT--TSSCSSCEEEECSSHHHHHHHGGG-CSEEE----
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCC--cCCeEEEEECC--CCCcceEEEEEECCHHHHHHHHHh-CCCcc----
Confidence 4456789999999999999999999999998 9 889999987 899999999999999999999987 88766
Q ss_pred CCceEEEeecCCC
Q 013047 105 PERTVKVAFAEPL 117 (450)
Q Consensus 105 ~gr~i~v~~a~~~ 117 (450)
.++.|+|.++.++
T Consensus 82 ~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 82 NGREAFVHVVTLE 94 (114)
T ss_dssp TTEEEEEEEECHH
T ss_pred CCeEEEEEECCHH
Confidence 5899999998643
No 134
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.2e-17 Score=135.25 Aligned_cols=83 Identities=25% Similarity=0.368 Sum_probs=76.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceE
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 109 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i 109 (450)
.++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++||+. ++..+ .++.|
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~----~g~~l 98 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPA-SKRSRGFGFVTFSSMAEVDAAMAA-RPHSI----DGRVV 98 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCC--CSEEEEECCTT-TSSCCSEEEEECSSHHHHHHHHTS-CSEEE----TTEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCC--EEEEEEEECCC-CCCcCceEEEEeCCHHHHHHHHHh-CCcEE----CCEEE
Confidence 589999999999999999999999999 99999999865 899999999999999999999987 77665 58999
Q ss_pred EEeecCCCCCC
Q 013047 110 KVAFAEPLREP 120 (450)
Q Consensus 110 ~v~~a~~~~~~ 120 (450)
+|.++.++...
T Consensus 99 ~V~~a~~~~~~ 109 (116)
T 1x4b_A 99 EPKRAVAREES 109 (116)
T ss_dssp EEECCSSCCCC
T ss_pred EEEECCCCccC
Confidence 99999887654
No 135
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.68 E-value=9.3e-17 Score=126.93 Aligned_cols=79 Identities=20% Similarity=0.456 Sum_probs=74.5
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
..++|||+|||+++++++|+++|++||.|+.|.|+.+..+++++++|||+|++.++|++|++.||+..|.++.|+|.+.
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5689999999999999999999999999999999999889999999999999999999999999999999998777653
No 136
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.68 E-value=1.4e-16 Score=141.07 Aligned_cols=86 Identities=28% Similarity=0.388 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
...++|||+|||+++|+++|+++|++||. |++|+|+.|+. ++.++|||||+|.+.++|++||+.||+..+ .++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~--v~~~~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~ 140 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGR--VGDVYIPRDRY-TKESRGFAFVRFHDKRDAEDAMDAMDGAVL----DGR 140 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSC--EEEEECCCCSS-CTTSCCEEEEEESBHHHHHHHHHHSTTEES----SSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEeecCC-CCccceEEEEEECCHHHHHHHHHHhCCCEE----CCe
Confidence 44789999999999999999999999999 99999999875 899999999999999999999999999876 589
Q ss_pred eEEEeecCCCCCC
Q 013047 108 TVKVAFAEPLREP 120 (450)
Q Consensus 108 ~i~v~~a~~~~~~ 120 (450)
.|+|.++.++...
T Consensus 141 ~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 141 ELRVQMARYGRPP 153 (158)
T ss_dssp EEEEEEECCSSCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876543
No 137
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=6.2e-17 Score=152.64 Aligned_cols=80 Identities=20% Similarity=0.301 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcC--CCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G--~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
..++|||+||++++|+++|+++|++|| . |++|+|++|+. |+++||||||+|++.++|++||+.||+..| .+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~--v~~v~i~~d~~-tg~skGfaFV~f~~~~~a~~Ai~~lng~~~----~G 139 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVND--ILEIKFFENRA-NGQSKGFALVGVGSEASSKKLMDLLPKREL----HG 139 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCC--EEEEEEEECTT-TCCEEEEEEEEESCTTHHHHHHTTSTTSCB----TT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcc--eEEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHcCCCeE----CC
Confidence 567899999999999999999999999 8 99999999976 999999999999999999999999999988 58
Q ss_pred ceEEEeecC
Q 013047 107 RTVKVAFAE 115 (450)
Q Consensus 107 r~i~v~~a~ 115 (450)
+.|+|+++.
T Consensus 140 r~l~V~~a~ 148 (229)
T 3q2s_C 140 QNPVVTPVN 148 (229)
T ss_dssp BCCEEEECC
T ss_pred EEeEEEECC
Confidence 999999885
No 138
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.8e-16 Score=129.07 Aligned_cols=79 Identities=16% Similarity=0.348 Sum_probs=73.2
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....++|||+|||+++|+++|+++|++||.|+.|.|+.+ ++.+++||||+|++.++|++||+.||+..|.++.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346789999999999999999999999999999999998 788999999999999999999999999999999877766
Q ss_pred E
Q 013047 205 R 205 (450)
Q Consensus 205 ~ 205 (450)
.
T Consensus 90 a 90 (103)
T 2d9p_A 90 A 90 (103)
T ss_dssp C
T ss_pred e
Confidence 4
No 139
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=9.9e-17 Score=132.50 Aligned_cols=82 Identities=17% Similarity=0.308 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCC------cHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcc
Q 013047 28 EDNDTLFVGNICNTW------TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVV 101 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~------te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~ 101 (450)
...++|||+|||+++ |+++|+++|++||. |++|+|++ .++.++|||||+|.+.++|++||+.||+..+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~--v~~v~i~~---~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~- 86 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGK--ITNDFYPE---EDGKTKGYIFLEYASPAHAVDAVKNADGYKL- 86 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSC--EEEEECCC---BTTBSCCEEEEEECSSSHHHHHHHHCSSEEC-
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCC--EEEEEeeC---CCCCeeeEEEEEECCHHHHHHHHHHhCCccc-
Confidence 346899999999999 89999999999999 99999983 2899999999999999999999999999887
Q ss_pred cCCCCc-eEEEeecCCCC
Q 013047 102 FGHPER-TVKVAFAEPLR 118 (450)
Q Consensus 102 ~g~~gr-~i~v~~a~~~~ 118 (450)
.++ .|+|.++....
T Consensus 87 ---~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 87 ---DKQHTFRVNLFTDFD 101 (105)
T ss_dssp ---STTCEEEEECSCCCC
T ss_pred ---CCCceEEEEEcchHh
Confidence 588 99999987543
No 140
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=134.12 Aligned_cols=82 Identities=11% Similarity=0.153 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCC--CCcccCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK--PDVVFGH 104 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~--~~~~~g~ 104 (450)
...+++|||+|||+++|+++|+++|++||. |++|+|+++ ||||||+|++.++|++||+.|++ ..+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~--V~~v~i~~~-------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l---- 94 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGK--VTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVL---- 94 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSC--CCEEEEEGG-------GTEEEEECSCHHHHHHHHHHHHHHCCCB----
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--EEEEEEeCC-------CCEEEEEECCHHHHHHHHHHhccCCceE----
Confidence 345789999999999999999999999999 999999975 59999999999999999998874 344
Q ss_pred CCceEEEeecCCCCCCC
Q 013047 105 PERTVKVAFAEPLREPD 121 (450)
Q Consensus 105 ~gr~i~v~~a~~~~~~~ 121 (450)
.+++|+|.++..+....
T Consensus 95 ~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 95 RGQPIYIQFSNHKELKT 111 (119)
T ss_dssp TTBCCEEEECSSSSCCC
T ss_pred CCeEEEEEEccCCCCCc
Confidence 48999999998766543
No 141
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=1.4e-16 Score=142.54 Aligned_cols=86 Identities=30% Similarity=0.472 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
....++|||+|||+++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++||+.||+..| .+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~--i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~----~g 141 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGE--IKNIHLNLDRR-TGFSKGYALVEYETHKQALAAKEALNGAEI----MG 141 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECTT-TSSEEEEEEEEESSHHHHHHHHHHHTTCEE----TT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCC--EEEEEEEecCC-CCcEeeEEEEEECCHHHHHHHHHHhCCCEE----CC
Confidence 345678999999999999999999999999 99999999876 899999999999999999999999999877 58
Q ss_pred ceEEEeecCCCCC
Q 013047 107 RTVKVAFAEPLRE 119 (450)
Q Consensus 107 r~i~v~~a~~~~~ 119 (450)
+.|+|.|+.++..
T Consensus 142 ~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 142 QTIQVDWCFVKGP 154 (165)
T ss_dssp EECEEEESEECC-
T ss_pred EEEEEEEecCCCC
Confidence 9999999976554
No 142
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=133.95 Aligned_cols=77 Identities=22% Similarity=0.376 Sum_probs=69.4
Q ss_pred ccEEEEcCCCCCchhHHHHHhhhccC-ceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC-CCeecCCeeEEEE
Q 013047 128 VKTVFLDGVPPHWKENQIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN-NKEFSDGNSKVKL 204 (450)
Q Consensus 128 ~~~lfV~nLp~~~te~dL~~~F~~~G-~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~-g~~~~g~~i~v~v 204 (450)
+++|||+|||.++||++|+++|++|| .|+.|.|+.++.++.++|||||+|++.++|++||+.|+ +..|.|+.|.|.+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 36899999999999999999999999 89999999999999999999999999999999998874 5678898655443
No 143
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=129.88 Aligned_cols=86 Identities=19% Similarity=0.392 Sum_probs=77.0
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceE-EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVI-RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~-~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
...++|||+|||+++++++|+++|++||.|+ .|.|+.++.++++++||||+|++.++|++||+.||+..|.++.+.+.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3568999999999999999999999999999 999999999999999999999999999999999999999999854444
Q ss_pred EEeeCCC
Q 013047 205 RARLSNP 211 (450)
Q Consensus 205 ~~~~~~~ 211 (450)
++..+++
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 4444443
No 144
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.2e-17 Score=136.60 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=75.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
+.++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++|| .||+..| .++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~-~l~g~~~----~g~~ 95 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGK--VRDVRIISDRN-SRRSKGIAYVEFCEIQSVPLAI-GLTGQRL----LGVP 95 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSC--EEEEEECCSCC-SSSCCCCEEEEESCGGGHHHHH-HHTTEEE----TTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCC--EeEEEEEecCC-CCccCcEEEEEeCcHHHHHHHH-HcCCCEe----CCeE
Confidence 4689999999999999999999999999 99999999875 7999999999999999999999 9999877 5899
Q ss_pred EEEeecCCC
Q 013047 109 VKVAFAEPL 117 (450)
Q Consensus 109 i~v~~a~~~ 117 (450)
|+|.++.++
T Consensus 96 l~V~~a~~~ 104 (114)
T 2cq4_A 96 IIVQASQAE 104 (114)
T ss_dssp EEEEEHHHH
T ss_pred EEEEecCCC
Confidence 999998653
No 145
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=130.43 Aligned_cols=86 Identities=30% Similarity=0.473 Sum_probs=75.9
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCC
Q 013047 25 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 104 (450)
Q Consensus 25 ~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~ 104 (450)
......++|||+|||.++|+++|+++|++| .+|+++.+.. +++++|||||+|++.++|++||+.||+..|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-----~~~~~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---- 79 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS-----VRARIVTDRE-TGSSKGFGFVDFNSEEDAKAAKEAMEDGEI---- 79 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC-----SEEEEEECSS-SCSEEEEEEEECSSHHHHHHHHHHHTTCEE----
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC-----eEEEEEecCC-CCCcCcEEEEEECCHHHHHHHHHHhCCCeE----
Confidence 345678999999999999999999999965 3588888765 899999999999999999999999999887
Q ss_pred CCceEEEeecCCCCCC
Q 013047 105 PERTVKVAFAEPLREP 120 (450)
Q Consensus 105 ~gr~i~v~~a~~~~~~ 120 (450)
.++.|+|.++.++.+.
T Consensus 80 ~g~~l~V~~a~~~~~~ 95 (102)
T 2fc8_A 80 DGNKVTLDWAKPKGEG 95 (102)
T ss_dssp TTEECEEEECCCCCSS
T ss_pred CCeEEEEEEecCCCCC
Confidence 5899999999877654
No 146
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.68 E-value=9e-17 Score=131.60 Aligned_cols=79 Identities=14% Similarity=0.214 Sum_probs=74.3
Q ss_pred CccEEEEcCCCC------CchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecC-Ce
Q 013047 127 HVKTVFLDGVPP------HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GN 199 (450)
Q Consensus 127 ~~~~lfV~nLp~------~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g-~~ 199 (450)
..++|||+|||+ ++++++|+++|++||.|+.|.|+.++.|++++|||||+|++.++|++||+.||+..|.+ +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357999999999 99999999999999999999999999999999999999999999999999999999999 88
Q ss_pred eEEEEE
Q 013047 200 SKVKLR 205 (450)
Q Consensus 200 i~v~v~ 205 (450)
|.|.+.
T Consensus 85 l~V~~a 90 (100)
T 3ns6_A 85 LFLYTM 90 (100)
T ss_dssp CEEEES
T ss_pred EEEEEC
Confidence 776654
No 147
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=128.40 Aligned_cols=80 Identities=14% Similarity=0.224 Sum_probs=74.4
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....++|||+|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+.||+..|.++.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999998766654
No 148
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.4e-16 Score=128.01 Aligned_cols=83 Identities=19% Similarity=0.366 Sum_probs=73.8
Q ss_pred cCCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccC
Q 013047 24 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 103 (450)
Q Consensus 24 ~~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g 103 (450)
......+++|||+|||.++|+++|+++|++||. |++|+|+++ +|||||+|++.++|++||+.||+..+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--v~~v~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~--- 78 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGS--IRTIDHVKG-------DSFAYIQYESLDAAQAACAKMRGFPL--- 78 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSC--EEEEEECSS-------SCCEEEEESSHHHHHHHHHHHTTCBC---
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEeCC-------CCEEEEEECCHHHHHHHHHHHCCCEe---
Confidence 344556789999999999999999999999999 999999864 58999999999999999999999877
Q ss_pred CC--CceEEEeecCCCCC
Q 013047 104 HP--ERTVKVAFAEPLRE 119 (450)
Q Consensus 104 ~~--gr~i~v~~a~~~~~ 119 (450)
. ++.|+|+++.++..
T Consensus 79 -~~~g~~l~V~~a~~~~~ 95 (97)
T 1why_A 79 -GGPDRRLRVDFAKSGPS 95 (97)
T ss_dssp -SSSSCBCEEEECCCCCC
T ss_pred -CCCCcEEEEEECCCCCC
Confidence 4 79999999987653
No 149
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.67 E-value=3.5e-16 Score=128.83 Aligned_cols=78 Identities=19% Similarity=0.315 Sum_probs=72.0
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecC---CeeEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD---GNSKV 202 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g---~~i~v 202 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+.++ ++++++||||+|++.++|++||+.||+..|.+ +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 357899999999999999999999999999999999997 78999999999999999999999999999998 77655
Q ss_pred EE
Q 013047 203 KL 204 (450)
Q Consensus 203 ~v 204 (450)
.+
T Consensus 92 ~~ 93 (105)
T 2dnh_A 92 KF 93 (105)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 150
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.67 E-value=4e-16 Score=135.21 Aligned_cols=79 Identities=22% Similarity=0.429 Sum_probs=73.9
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
...++|||+||++++++++|+++|++||.|+.|.|+.++.+++++|||||+|++.++|++||++||+..|.++.|+|.+
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999765555
No 151
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=131.61 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
....++|||+|||+++|+++|+++|++||. |++|+|+.+ |||||+|++.++|++||+.||+..+ .+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l~g~~~----~g 77 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGD--VCYADVYRD--------GTGVVEFVRKEDMTYAVRKLDNTKF----RS 77 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSC--EEEEEEETT--------TEEEEEESSHHHHHHHHHHSSSEEE----EC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--EeEEEEecC--------CEEEEEECCHHHHHHHHHHHCcCCc----cC
Confidence 345789999999999999999999999999 999999975 8999999999999999999999887 36
Q ss_pred -----ceEEEeecCCCCCC
Q 013047 107 -----RTVKVAFAEPLREP 120 (450)
Q Consensus 107 -----r~i~v~~a~~~~~~ 120 (450)
+.|+|+++.++...
T Consensus 78 ~~~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 78 HEGETAYIRVKVDGPRSPS 96 (108)
T ss_dssp TTSCEEEEEEEESSCCSCC
T ss_pred CcCcceEEEEEeCCCCCCC
Confidence 89999999876543
No 152
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3e-16 Score=129.59 Aligned_cols=81 Identities=17% Similarity=0.411 Sum_probs=75.1
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHh-CCCeecCCeeEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARN-MSTAKRKDYGFIDFSTHEAAVACINAI-NNKEFSDGNSKV 202 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d-~~~g~~rG~afV~F~s~e~A~~Ai~~l-~g~~~~g~~i~v 202 (450)
....++|||+|||+++++++|+++|++||.|+.|.|+.+ +.++.+++||||+|++.++|++||+.| |+..|.++.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 346689999999999999999999999999999999998 788999999999999999999999999 999999998776
Q ss_pred EEE
Q 013047 203 KLR 205 (450)
Q Consensus 203 ~v~ 205 (450)
.+.
T Consensus 92 ~~a 94 (107)
T 2cph_A 92 EWA 94 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 664
No 153
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=2.5e-17 Score=131.83 Aligned_cols=81 Identities=28% Similarity=0.486 Sum_probs=72.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEE
Q 013047 31 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 110 (450)
Q Consensus 31 ~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~ 110 (450)
++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.+ |++|++.||+..+ .++.|+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~-a~~a~~~l~g~~~----~g~~l~ 73 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGK--VFNVKLIYDRE-TKKPKGFGFVEMQEES-VSEAIAKLDNTDF----MGRTIR 73 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTC--CSEEEECCCSS-SCCCCEEEEEEECTTH-HHHHHHTSCSSCC----SSSSCS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCC--EEEEEEEEcCC-CCCcceEEEEEECCHH-HHHHHHHhCCCEE----CCeEEE
Confidence 58999999999999999999999999 99999999875 8999999999999999 9999999999887 589999
Q ss_pred EeecCCCCC
Q 013047 111 VAFAEPLRE 119 (450)
Q Consensus 111 v~~a~~~~~ 119 (450)
|++|.+...
T Consensus 74 V~~a~~~~~ 82 (90)
T 2ki2_A 74 VTEANPKKS 82 (90)
T ss_dssp EEEC-----
T ss_pred EEEcCCCCC
Confidence 999976543
No 154
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=130.48 Aligned_cols=79 Identities=19% Similarity=0.334 Sum_probs=74.4
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+.||+..|.++.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4568999999999999999999999999999999999988999999999999999999999999999999999866655
No 155
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-16 Score=128.28 Aligned_cols=80 Identities=26% Similarity=0.331 Sum_probs=75.3
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeec
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR--------IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~--------v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~ 196 (450)
....++|||+||++++++++|+++|++||.|+. |.|+.++.+++++|||||+|++.++|++||+.||+..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345689999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCeeEEEE
Q 013047 197 DGNSKVKL 204 (450)
Q Consensus 197 g~~i~v~v 204 (450)
|+.|+|.+
T Consensus 90 g~~l~V~~ 97 (99)
T 2la6_A 90 GNPIKVSF 97 (99)
T ss_dssp SSBCEEEE
T ss_pred CcEEEEEe
Confidence 99887765
No 156
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1e-16 Score=129.79 Aligned_cols=79 Identities=23% Similarity=0.463 Sum_probs=73.5
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRI-VLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v-~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
..++|||+|||+++++++|+++|++||.|+.| .|+.++.++.+++||||+|++.++|++||+.||+..|.++.|+|.+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46799999999999999999999999999999 99999889999999999999999999999999999999987666553
No 157
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.67 E-value=4.8e-17 Score=133.16 Aligned_cols=85 Identities=21% Similarity=0.368 Sum_probs=74.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||.++|+++|+++|++|| |++|+|+.++.++++++|||||+|.+.++|++|| .|++..+ .
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G---i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~----~ 86 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN---ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL----G 86 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC---EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB----T
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC---CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE----C
Confidence 345679999999999999999999999998 9999999987448999999999999999999999 8999987 5
Q ss_pred CceEEEeecCCCC
Q 013047 106 ERTVKVAFAEPLR 118 (450)
Q Consensus 106 gr~i~v~~a~~~~ 118 (450)
++.|+|+++.++.
T Consensus 87 g~~l~V~~a~~~~ 99 (100)
T 2j76_E 87 NRRIRVDVADQAQ 99 (100)
T ss_dssp TBCCCCEECCCSC
T ss_pred CeEEEEEeccCCC
Confidence 8999999997653
No 158
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.2e-17 Score=131.64 Aligned_cols=80 Identities=20% Similarity=0.453 Sum_probs=74.2
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+.||+..|.++.|+|.+.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 35689999999999999999999999999999999999899999999999999999999999999999999987666553
No 159
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=131.07 Aligned_cols=81 Identities=25% Similarity=0.395 Sum_probs=74.5
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC------CCeecCC
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN------NKEFSDG 198 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~------g~~~~g~ 198 (450)
....++|||+|||+++++++|+++|++||.|+.|.|+.++.++.+++||||+|++.++|++||+.|| +..|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3456899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred eeEEEEE
Q 013047 199 NSKVKLR 205 (450)
Q Consensus 199 ~i~v~v~ 205 (450)
.|+|.+.
T Consensus 92 ~l~v~~a 98 (111)
T 1x4h_A 92 QLKVDLA 98 (111)
T ss_dssp EEEEECC
T ss_pred EEEEEEC
Confidence 7655443
No 160
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=129.85 Aligned_cols=78 Identities=10% Similarity=0.289 Sum_probs=71.6
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS---TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~---~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~ 203 (450)
..++|||+|||+++++++|+++|++||.|+.|.|+.+.. ++.+++||||+|++.++|++||+.||+..|.++.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 457999999999999999999999999999999999876 66899999999999999999999999999999876554
Q ss_pred E
Q 013047 204 L 204 (450)
Q Consensus 204 v 204 (450)
+
T Consensus 84 ~ 84 (98)
T 2cpf_A 84 I 84 (98)
T ss_dssp C
T ss_pred E
Confidence 4
No 161
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=1.8e-16 Score=134.67 Aligned_cols=82 Identities=21% Similarity=0.350 Sum_probs=75.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceE
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 109 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i 109 (450)
.++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||||+|.+.++|++|| .|++..+ .++.|
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~-~l~g~~~----~g~~l 107 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGS--INRITILCDKF-SGHPKGYAYIEFAERNSVDAAV-AMDETVF----RGRTI 107 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSC--EEEEEEEEECT-TSSCEEEEEEEESSHHHHHHHH-TTTTCEE----TTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCC--EEEEEEEecCC-CCCcccEEEEEECCHHHHHHHH-hcCCCeE----CCeEE
Confidence 689999999999999999999999999 99999999865 8999999999999999999999 7999887 58999
Q ss_pred EEeecCCCCC
Q 013047 110 KVAFAEPLRE 119 (450)
Q Consensus 110 ~v~~a~~~~~ 119 (450)
+|.++.+...
T Consensus 108 ~V~~a~~~~~ 117 (124)
T 2jwn_A 108 KVLPKRTNMP 117 (124)
T ss_dssp EEEESSCCCS
T ss_pred EEEECCCCCC
Confidence 9999976443
No 162
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=129.75 Aligned_cols=84 Identities=23% Similarity=0.434 Sum_probs=74.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||.++|+++|+++|++||. | +|+.+. +++++|||||+|.+.++|++||+.||+..+ .
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~--v---~~~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~----~ 79 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATF--I---KVPQNQ--NGKSKGYAFIEFASFEDAKEALNSCNKREI----E 79 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSE--E---ECCBCS--SSCBCSEEEEECSSHHHHHHHHHHTSSEEE----T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCE--E---EEEECC--CCCEeeEEEEEECCHHHHHHHHHHhCCCEe----C
Confidence 4556899999999999999999999999997 5 666663 899999999999999999999999999877 5
Q ss_pred CceEEEeecCCCCCC
Q 013047 106 ERTVKVAFAEPLREP 120 (450)
Q Consensus 106 gr~i~v~~a~~~~~~ 120 (450)
++.|+|.++.++...
T Consensus 80 g~~l~v~~a~~~~~~ 94 (101)
T 2fc9_A 80 GRAIRLELQGPRGSP 94 (101)
T ss_dssp TEEEEEEECSSCCCC
T ss_pred CeEEEEEEcCCCCCC
Confidence 899999999877553
No 163
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.67 E-value=4.4e-16 Score=144.21 Aligned_cols=109 Identities=13% Similarity=0.233 Sum_probs=95.4
Q ss_pred hHHHHHhhCCCcccCCcccccCCCC-----------------CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEe
Q 013047 4 LFLIYILIFPLKQICGKRCGTAPSE-----------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS 66 (450)
Q Consensus 4 ~~~~~le~~~~~~~~~k~~~~~~~~-----------------~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~ 66 (450)
-...+|+.+.+..+.++.+.+.... ..++|||+|||.++|+++|+++|++||. |++|+|+.
T Consensus 82 ~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~--v~~v~i~~ 159 (216)
T 2qfj_A 82 AAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK--IKSATLAR 159 (216)
T ss_dssp HHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSC--EEEEEEEE
T ss_pred HHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCC--eeEEEEEe
Confidence 4566788888888999988875543 3479999999999999999999999999 99999999
Q ss_pred CCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCC
Q 013047 67 DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 119 (450)
Q Consensus 67 d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~ 119 (450)
++. ++.++|||||+|.+.++|++|++.||+..+ .++.|+|.++.+...
T Consensus 160 ~~~-~g~~~g~afV~F~~~~~A~~A~~~l~g~~~----~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 160 DPT-TGKHKGYGFIEYEKAQSSQDAVSSMNLFDL----GGQYLRVGKAVTPPM 207 (216)
T ss_dssp CTT-TCCEEEEEEEEESSHHHHHHHHHHHTTCBC----SSSBCEEEECSSCSS
T ss_pred cCC-CCCcCceEEEEecCHHHHHHHHHHccCCEe----CCcEEEEEEecCCCC
Confidence 876 899999999999999999999999999987 589999999987654
No 164
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2e-16 Score=129.83 Aligned_cols=80 Identities=13% Similarity=0.218 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhC--CCCcccCCC
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ--KPDVVFGHP 105 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~--~~~~~~g~~ 105 (450)
..+++|||+|||+++|+++|+++|++||. |++|.|+++ ||||||+|++.++|++||+.|+ +..+ .
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~--v~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~----~ 79 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGK--VTNILMLKG-------KNQAFLELATEEAAITMVNYYSAVTPHL----R 79 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSC--EEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCEE----T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC--EEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceE----C
Confidence 45789999999999999999999999999 999999865 5999999999999999999875 4444 4
Q ss_pred CceEEEeecCCCCCC
Q 013047 106 ERTVKVAFAEPLREP 120 (450)
Q Consensus 106 gr~i~v~~a~~~~~~ 120 (450)
+++|.|.++..+...
T Consensus 80 Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 80 NQPIYIQYSNHKELK 94 (101)
T ss_dssp TEECEEEECSCSSCC
T ss_pred CcEEEEEEcCcccCc
Confidence 899999999876554
No 165
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.5e-16 Score=127.72 Aligned_cols=78 Identities=17% Similarity=0.355 Sum_probs=72.6
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+.+. ++++++||||+|++.++|++||+.||+..|.++.|+|.+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 356799999999999999999999999999999999997 889999999999999999999999999999998766555
No 166
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=125.67 Aligned_cols=81 Identities=20% Similarity=0.334 Sum_probs=72.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||.++|+++|+++|++||. |++|+|+ +|||||+|.+.++|++|++.||+..+ .
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~----~ 68 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGK--VLECDII---------KNYGFVHIEDKTAAEDAIRNLHHYKL----H 68 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSC--EEEEEEE---------TTEEEEEESSHHHHHHHHHHHTTCBC----S
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCC--EEEEEEE---------CCEEEEEECCHHHHHHHHHHhcCCcc----C
Confidence 3456889999999999999999999999999 9999998 37999999999999999999999877 5
Q ss_pred CceEEEeecCCCCCCC
Q 013047 106 ERTVKVAFAEPLREPD 121 (450)
Q Consensus 106 gr~i~v~~a~~~~~~~ 121 (450)
++.|+|+++.++....
T Consensus 69 g~~l~v~~a~~~~~~~ 84 (90)
T 2dnq_A 69 GVNINVEASKNKSKAS 84 (90)
T ss_dssp SCBCEEECSSCCCCCC
T ss_pred CcEEEEEECCCCCCCC
Confidence 8999999998766543
No 167
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=3.5e-16 Score=128.49 Aligned_cols=79 Identities=15% Similarity=0.293 Sum_probs=72.8
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....++|||+|||+++++++|+++|++|| |+.|.|+.++.+++++|||||+|++.++|++|| +||+..|.++.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34568999999999999999999999997 999999999999999999999999999999999 8999999998766655
Q ss_pred E
Q 013047 205 R 205 (450)
Q Consensus 205 ~ 205 (450)
.
T Consensus 90 a 90 (103)
T 2dng_A 90 A 90 (103)
T ss_dssp C
T ss_pred e
Confidence 4
No 168
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=137.57 Aligned_cols=81 Identities=26% Similarity=0.475 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
....++|||+|||.++|+++|+++|++||. |++|+|+.++. +++++|||||+|++.++|++||+.||+..+ .+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g 132 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGD--ITDIQIPLDYE-TEKHRGFAFVEFELAEDAAAAIDNMNESEL----FG 132 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSC--EEEEECCCCTT-TCCCCSEEEEEESCHHHHHHHHHHSTEEEE----TT
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCC--EEEEEEeecCC-CCCcCcEEEEEECCHHHHHHHHHHhCCCEE----CC
Confidence 345789999999999999999999999999 99999999865 899999999999999999999999999877 58
Q ss_pred ceEEEeec
Q 013047 107 RTVKVAFA 114 (450)
Q Consensus 107 r~i~v~~a 114 (450)
+.|+|++|
T Consensus 133 ~~l~v~~A 140 (140)
T 2ku7_A 133 RTIRVNLA 140 (140)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEeC
Confidence 99999875
No 169
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.6e-16 Score=128.09 Aligned_cols=79 Identities=27% Similarity=0.464 Sum_probs=74.4
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+.||+..|.++.|+|.+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 3567999999999999999999999999999999999998999999999999999999999999999999998877665
No 170
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.66 E-value=7.8e-17 Score=126.53 Aligned_cols=73 Identities=19% Similarity=0.375 Sum_probs=65.9
Q ss_pred CCeEEEcCCCCCC------cHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccC
Q 013047 30 NDTLFVGNICNTW------TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 103 (450)
Q Consensus 30 ~~~lyV~nLp~~~------te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g 103 (450)
+++|||+|||.++ |+++|+++|++||. |++|+|+++ +++++|||||+|.+.++|++|++.||+..+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~--i~~v~i~~~---~g~~~g~afV~f~~~~~A~~Ai~~lng~~~--- 72 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGK--ITNDFYPEE---DGKTKGYIFLEYASPAHAVDAVKNADGYKL--- 72 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCC--EEEEECCCB---TTBCCCEEEEEESSHHHHHHHHTTSSSCCC---
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCC--eEEEEecCC---CCcEeEEEEEEECCHHHHHHHHHHhcCccc---
Confidence 4799999999999 88999999999999 999998842 899999999999999999999999999987
Q ss_pred CCCc-eEEE
Q 013047 104 HPER-TVKV 111 (450)
Q Consensus 104 ~~gr-~i~v 111 (450)
.++ +|+|
T Consensus 73 -~g~~~l~V 80 (81)
T 2krb_A 73 -DKQHTFRV 80 (81)
T ss_dssp -SSSSCCCC
T ss_pred -CCceeEEe
Confidence 466 6665
No 171
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.66 E-value=2.6e-16 Score=127.58 Aligned_cols=78 Identities=24% Similarity=0.410 Sum_probs=73.5
Q ss_pred ccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 128 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 128 ~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
+++|||+|||.++++++|+++|++||.|+.|.|+.++.+++++|||||+|++.++|++||+.||+..|.++.|+|.+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 579999999999999999999999999999999999989999999999999999999999999999999987666654
No 172
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.66 E-value=3.6e-16 Score=129.20 Aligned_cols=80 Identities=8% Similarity=0.179 Sum_probs=75.0
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....++|||+|||+++++++|+++|++||.|+.|.|+.+. +++++++|||+|++.++|++||++||+..|.++.|+|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3467899999999999999999999999999999999998 899999999999999999999999999999999888776
Q ss_pred E
Q 013047 205 R 205 (450)
Q Consensus 205 ~ 205 (450)
.
T Consensus 105 a 105 (107)
T 3ulh_A 105 V 105 (107)
T ss_dssp E
T ss_pred e
Confidence 5
No 173
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=128.05 Aligned_cols=82 Identities=24% Similarity=0.302 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||+++|+++|+++|++||. |. |.++.+ .++|||||+|.+.++|++||+.||+..+ .
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~--v~-~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~----~ 82 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGS--VP-LRLTWQ-----GPRRRAFLHYPDSAAAQQAVSCLQGLRL----G 82 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTC--CC-SEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCCS----S
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCC--EE-EEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCEE----C
Confidence 3445789999999999999999999999998 86 777753 5679999999999999999999999987 5
Q ss_pred CceEEEeecCCCCC
Q 013047 106 ERTVKVAFAEPLRE 119 (450)
Q Consensus 106 gr~i~v~~a~~~~~ 119 (450)
++.|+|.++.+++.
T Consensus 83 g~~l~V~~a~~~~~ 96 (97)
T 2e5j_A 83 TDTLRVALARQQRD 96 (97)
T ss_dssp SSCCEEEECCCCCC
T ss_pred CcEEEEEEcCCCCC
Confidence 89999999987643
No 174
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=3.2e-16 Score=134.00 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHH----HHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCccc
Q 013047 27 SEDNDTLFVGNICNTWTKEAIK----QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 102 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~----~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~ 102 (450)
...+++|||+|||+++++++|+ ++|++||. |++|.+.. ++.++|||||+|.+.++|++||+.||+..+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~--I~~v~i~~----~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l-- 97 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGD--ILDIVVDL----SDDNSGKAYIVFATQESAQAFVEAFQGYPF-- 97 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSC--EEEEEECC----CCSSCCCEEEEESSHHHHHHHHHHSTTCCC--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCC--eEEEEecc----CCCcCCEEEEEECCHHHHHHHHHHHCCCEe--
Confidence 3457899999999999999876 79999999 99998864 678999999999999999999999999987
Q ss_pred CCCCceEEEeecCCCC
Q 013047 103 GHPERTVKVAFAEPLR 118 (450)
Q Consensus 103 g~~gr~i~v~~a~~~~ 118 (450)
.++.|+|.|+..+.
T Consensus 98 --~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 98 --QGNPLVITFSETPQ 111 (127)
T ss_dssp --TTSCCEEEECCCCC
T ss_pred --CCCEEEEEEccCcc
Confidence 58999999997654
No 175
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=1.2e-16 Score=129.69 Aligned_cols=84 Identities=20% Similarity=0.358 Sum_probs=74.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHH----HHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcc
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIK----QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVV 101 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~----~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~ 101 (450)
....+++|||+|||.++|+++|+ ++|++||. |++|+|+. ++.++|||||+|.+.++|++|++.||+..+
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~--i~~v~i~~----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~- 76 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQ--ILDILVSR----SLKMRGQAFVIFKEVSSATNALRSMQGFPF- 76 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSC--EEEEECCH----HHHHTTCEEEEESSHHHHHHHHHHHTTCEE-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCC--EEEEEEEc----CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE-
Confidence 34568899999999999999999 99999999 99999874 677889999999999999999999999887
Q ss_pred cCCCCceEEEeecCCCCC
Q 013047 102 FGHPERTVKVAFAEPLRE 119 (450)
Q Consensus 102 ~g~~gr~i~v~~a~~~~~ 119 (450)
.++.|+|.++.++.+
T Consensus 77 ---~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 77 ---YDKPMRIQYAKTDSD 91 (97)
T ss_dssp ---TTEECEEEECSSCCT
T ss_pred ---CCcEEEEEEccCCCc
Confidence 589999999987553
No 176
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.66 E-value=3.8e-16 Score=129.78 Aligned_cols=82 Identities=22% Similarity=0.367 Sum_probs=75.8
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....++|||+|||+++++++|+++|++||.|+.|.|+.+..++.+++||||+|++.++|++||+.||+..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 44668999999999999999999999999999999999998999999999999999999999999999999998877666
Q ss_pred EE
Q 013047 205 RA 206 (450)
Q Consensus 205 ~~ 206 (450)
..
T Consensus 103 a~ 104 (110)
T 1oo0_B 103 CF 104 (110)
T ss_dssp SE
T ss_pred cc
Confidence 43
No 177
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=129.02 Aligned_cols=78 Identities=12% Similarity=0.235 Sum_probs=72.6
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhc-cCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe-ecCCeeEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKG-YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE-FSDGNSKVKL 204 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~-~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~-~~g~~i~v~v 204 (450)
..++|||+|||+++|+++|+++|++ ||.|+.|.|+.+. ++++++||||+|++.++|++||+.|++.. |.++.|.|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 5689999999999999999999999 9999999999998 89999999999999999999999999999 9999765554
Q ss_pred E
Q 013047 205 R 205 (450)
Q Consensus 205 ~ 205 (450)
.
T Consensus 87 a 87 (104)
T 2dhg_A 87 A 87 (104)
T ss_dssp C
T ss_pred c
Confidence 3
No 178
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=2.2e-17 Score=143.47 Aligned_cols=119 Identities=14% Similarity=0.151 Sum_probs=68.8
Q ss_pred eeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCc
Q 013047 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGD 154 (450)
Q Consensus 75 kG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~ 154 (450)
+|+||.+|...+.+..++..+... .+ +...--.... ..........++|||+|||+++||++|+++|++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~---~g--g~~~g~~~g~---~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G- 71 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASM---TG--GQQMGRGSGD---SEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN- 71 (139)
T ss_dssp ----------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-
T ss_pred CCcccccccCccccchhcccchhc---cC--CCCCCCCCCC---cccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-
Confidence 378999999888877776554432 11 1111100000 11112234567999999999999999999999999
Q ss_pred eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 155 VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 155 v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
|+.|.|+.++. ++++|||||+|++.++|++|| +||++.|.++.|.|.+
T Consensus 72 i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 72 PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 77999999975 999999999999999999999 7999999999765544
No 179
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=9.3e-16 Score=128.19 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=73.2
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+.++ ++++++||||+|++.++|++||+.||++.|.++.|.|.+.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 356899999999999999999999999999999999987 5889999999999999999999999999999988777664
No 180
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.3e-17 Score=137.35 Aligned_cols=83 Identities=19% Similarity=0.194 Sum_probs=73.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
+..+.++|||+|||+++|+++|+++|++||. |++|.++.+.. +++++|||||+|++.++|++||+ ||+..| .
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~--v~~~~~~~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~g~~~----~ 92 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDI--VEDSIYIAYGP-NGKATGEGFVEFRNEADYKAALC-RHKQYM----G 92 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCB--CTTTCEEEECT-TSSEEEEEEEEBSSSHHHHHHHT-SCSBCS----T
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC--ccceEEEEECC-CCCCCeEEEEEECCHHHHHHHHH-hCCCeE----C
Confidence 4456789999999999999999999999998 98866665544 89999999999999999999999 999877 5
Q ss_pred CceEEEeecCC
Q 013047 106 ERTVKVAFAEP 116 (450)
Q Consensus 106 gr~i~v~~a~~ 116 (450)
++.|+|.++..
T Consensus 93 gr~i~V~~a~~ 103 (124)
T 1wel_A 93 NRFIQVHPITK 103 (124)
T ss_dssp TSCBEEEEECH
T ss_pred CcEEEEEECCH
Confidence 89999998854
No 181
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.6e-16 Score=125.79 Aligned_cols=79 Identities=14% Similarity=0.333 Sum_probs=71.5
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....++|||+|||+++++++|+++|++||.|+.|.|+.+.. .+++||||+|++.++|++||+.||+..|.++.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44668999999999999999999999999999999998854 3899999999999999999999999999998766655
Q ss_pred E
Q 013047 205 R 205 (450)
Q Consensus 205 ~ 205 (450)
.
T Consensus 90 a 90 (103)
T 2cq3_A 90 A 90 (103)
T ss_dssp C
T ss_pred c
Confidence 4
No 182
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.66 E-value=3.3e-16 Score=129.25 Aligned_cols=80 Identities=15% Similarity=0.364 Sum_probs=73.5
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee---cCCeeEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF---SDGNSKV 202 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~---~g~~i~v 202 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+.||+..+ .++.|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 3568999999999999999999999999999999999999999999999999999999999999999987 7787666
Q ss_pred EEE
Q 013047 203 KLR 205 (450)
Q Consensus 203 ~v~ 205 (450)
.+.
T Consensus 91 ~~a 93 (106)
T 2dgp_A 91 KPA 93 (106)
T ss_dssp EEC
T ss_pred EEC
Confidence 553
No 183
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.65 E-value=4.4e-16 Score=129.34 Aligned_cols=81 Identities=25% Similarity=0.372 Sum_probs=75.4
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....++|||+|||..+++++|+++|++||.|+.|.|+.++.+++++|||||+|++.++|++||+.||+..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44668999999999999999999999999999999999999999999999999999999999999999999999877655
Q ss_pred E
Q 013047 205 R 205 (450)
Q Consensus 205 ~ 205 (450)
.
T Consensus 103 a 103 (108)
T 2jrs_A 103 V 103 (108)
T ss_dssp S
T ss_pred c
Confidence 3
No 184
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=3.7e-17 Score=133.84 Aligned_cols=84 Identities=21% Similarity=0.262 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
....++|||+|||.++|+++|+++|++||. |.+ .++.+.. ++.++|||||+|++.++|++||+ ||+..+ .+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--v~~-~~~~~~~-~g~~~g~afV~f~~~~~a~~A~~-l~g~~~----~g 84 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFA--KND-LAVVDVR-TGTNRKFGYVDFESAEDLEKALE-LTGLKV----FG 84 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHH--HHT-CCCCEEE-EETTTTEEEEEESSHHHHHHHHH-GGGCCB----TT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCC--cce-EEEecCC-CCCcCcEEEEEECCHHHHHHHHh-cCCcEE----CC
Confidence 345789999999999999999999999998 888 5565544 78999999999999999999998 999887 58
Q ss_pred ceEEEeecCCCCC
Q 013047 107 RTVKVAFAEPLRE 119 (450)
Q Consensus 107 r~i~v~~a~~~~~ 119 (450)
+.|+|.++.++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 85 NEIKLEKPKGRDG 97 (101)
T ss_dssp BCCEEECCSCCCC
T ss_pred cEEEEEEcCCCCC
Confidence 9999999987654
No 185
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-16 Score=134.13 Aligned_cols=89 Identities=17% Similarity=0.257 Sum_probs=74.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
....+++|||+|||.++|+++|+++|++||. |++|.+..+.. ++.++|||||+|.+.++|++||+.|++..+ .
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~--v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~----~ 93 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQE--KKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKL----Y 93 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHH--SSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBC----S
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCC--ccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEe----C
Confidence 3446789999999999999999999999998 84443333222 788999999999999999999999999887 5
Q ss_pred CceEEEeecCCCCCCC
Q 013047 106 ERTVKVAFAEPLREPD 121 (450)
Q Consensus 106 gr~i~v~~a~~~~~~~ 121 (450)
++.|+|.++.++....
T Consensus 94 g~~l~v~~a~~~~~~~ 109 (115)
T 2cpx_A 94 GKILVIEFGKNKKQRS 109 (115)
T ss_dssp SCBCEEEECCCCSCCC
T ss_pred CcEEEEEEccCCCCCC
Confidence 8999999998776543
No 186
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.65 E-value=2.5e-16 Score=132.56 Aligned_cols=81 Identities=21% Similarity=0.386 Sum_probs=75.4
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....++|||+|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+.||+..|.++.|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999877765
Q ss_pred E
Q 013047 205 R 205 (450)
Q Consensus 205 ~ 205 (450)
.
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 3
No 187
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=4.2e-16 Score=139.08 Aligned_cols=103 Identities=23% Similarity=0.322 Sum_probs=91.3
Q ss_pred HHHHHhhCCCcccCCcccccCCCCC------CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEE
Q 013047 5 FLIYILIFPLKQICGKRCGTAPSED------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78 (450)
Q Consensus 5 ~~~~le~~~~~~~~~k~~~~~~~~~------~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~a 78 (450)
...+| .++...+.++.+.+..... .++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||
T Consensus 64 A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~--v~~v~i~~~~~-~g~~~g~a 139 (172)
T 2g4b_A 64 TTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGP--LKAFNLVKDSA-TGLSKGYA 139 (172)
T ss_dssp HHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSC--EEEEEEEECTT-TCSEEEEE
T ss_pred HHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCC--ceEEEEEecCC-CCCcceEE
Confidence 45566 6788888999888765543 489999999999999999999999999 99999999865 89999999
Q ss_pred EEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecC
Q 013047 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 115 (450)
Q Consensus 79 FVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~ 115 (450)
||+|.+.++|++|++.||+..+ .++.|+|++|.
T Consensus 140 fV~f~~~~~A~~A~~~l~g~~~----~g~~l~V~~As 172 (172)
T 2g4b_A 140 FCEYVDINVTDQAIAGLNGMQL----GDKKLLVQRAS 172 (172)
T ss_dssp EEEESSTTHHHHHHHHHTTCEE----TTEECEEEECC
T ss_pred EEEeCCHHHHHHHHHHcCCCEE----CCeEEEEEeCC
Confidence 9999999999999999999887 58999999873
No 188
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.65 E-value=3.5e-16 Score=126.35 Aligned_cols=78 Identities=18% Similarity=0.316 Sum_probs=72.6
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+.+.. +++++||||+|++.++|++||+.||+..|.++.|+|.+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 3568999999999999999999999999999999999875 88999999999999999999999999999998876655
No 189
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.65 E-value=7.1e-16 Score=136.41 Aligned_cols=105 Identities=27% Similarity=0.366 Sum_probs=92.8
Q ss_pred hHHHHHhhCCCcccCCcccccCCC--------CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCee
Q 013047 4 LFLIYILIFPLKQICGKRCGTAPS--------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 75 (450)
Q Consensus 4 ~~~~~le~~~~~~~~~k~~~~~~~--------~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~sk 75 (450)
-...+|+.+.+..+.++.+.+.+. ...++|||+|||.++|+++|+++|++||. |++|+++.+.. ++.++
T Consensus 53 ~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~--i~~~~i~~~~~-~~~~~ 129 (166)
T 3md3_A 53 DANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPS--YLSGHVMWDMQ-TGSSR 129 (166)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTT--EEEEEEEECTT-TCCEE
T ss_pred HHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCC--eeEEEEEecCC-CCCcc
Confidence 355677788888888888876543 33678999999999999999999999999 99999999865 89999
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecC
Q 013047 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 115 (450)
Q Consensus 76 G~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~ 115 (450)
|+|||+|.+.++|++|++.||+..+ .++.|+|.||+
T Consensus 130 g~afV~f~~~~~A~~A~~~l~g~~~----~g~~i~v~~a~ 165 (166)
T 3md3_A 130 GYGFVSFTSQDDAQNAMDSMQGQDL----NGRPLRINWAA 165 (166)
T ss_dssp EEEEEEESCHHHHHHHHHHHTTCEE----TTEECEEEESC
T ss_pred eEEEEEeCCHHHHHHHHHHhCCCcc----CCcEEEEEecC
Confidence 9999999999999999999999987 58999999985
No 190
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4.8e-16 Score=126.73 Aligned_cols=81 Identities=23% Similarity=0.381 Sum_probs=73.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
...+.++|||+|||.++|+++|+++|++||. |++|+|+++ +|||||+|++.++|++||+.|++..+ .
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~~~~~-------kg~afV~f~~~~~a~~a~~~l~g~~~----~ 77 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGK--AGEVFIHKD-------KGFGFIRLETRTLAEIAKVELDNMPL----R 77 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCC--CSEEEEETT-------TTEEEEECSSSHHHHHHHHHHTTCCB----T
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCC--eEEEEEecC-------CCEEEEEECCHHHHHHHHHHhCCCEe----C
Confidence 3456789999999999999999999999999 999999864 48999999999999999999999987 5
Q ss_pred CceEEEeecCCCCC
Q 013047 106 ERTVKVAFAEPLRE 119 (450)
Q Consensus 106 gr~i~v~~a~~~~~ 119 (450)
++.|+|.++.++..
T Consensus 78 g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 78 GKQLRVRFACHSAS 91 (99)
T ss_dssp TBCCEEEESSCCSC
T ss_pred CceEEEEEcCCCCC
Confidence 89999999987554
No 191
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.65 E-value=4.2e-16 Score=130.89 Aligned_cols=75 Identities=21% Similarity=0.405 Sum_probs=69.2
Q ss_pred ccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 128 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 128 ~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
..+|||+|||+++|+++|+++|++||.|+.|.|+.+. +.++|||||+|++.++|++||++|+++.|.|+.|.|.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~ 79 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 79 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4689999999999999999999999999999999985 44899999999999999999999999999999876655
No 192
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.65 E-value=5.3e-16 Score=127.51 Aligned_cols=79 Identities=24% Similarity=0.486 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
...++|||+|||.++|+++|+++|++||. |++|+|++ +||||+|.+.++|++||+.||+..+ .++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~--i~~v~~~~---------~~afV~f~~~~~a~~A~~~l~g~~~----~g~ 73 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGK--LERVKKLK---------DYAFIHFDERDGAVKAMEEMNGKDL----EGE 73 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSC--EEEEEECS---------SCEEEEESSHHHHHHHHHHHTTEEE----TTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC--EEEEEEEC---------CEEEEEeCCHHHHHHHHHHHCCCcc----CCC
Confidence 45789999999999999999999999999 99999874 5999999999999999999999877 589
Q ss_pred eEEEeecCCCCCCC
Q 013047 108 TVKVAFAEPLREPD 121 (450)
Q Consensus 108 ~i~v~~a~~~~~~~ 121 (450)
.|+|.++.++....
T Consensus 74 ~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 74 NIEIVFAKPPDQKR 87 (103)
T ss_dssp EEEEEECCCCCCCC
T ss_pred EEEEEEcCCCcccc
Confidence 99999998766543
No 193
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4e-16 Score=128.55 Aligned_cols=79 Identities=16% Similarity=0.372 Sum_probs=73.9
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
..++|||+|||+++|+++|+++|++||.|+.|.|+.+.. +.++|||||+|++.++|++||+ +++..|+|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 457999999999999999999999999999999999987 8999999999999999999998 99999999998887755
Q ss_pred e
Q 013047 207 R 207 (450)
Q Consensus 207 ~ 207 (450)
+
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 194
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.7e-16 Score=124.53 Aligned_cols=80 Identities=25% Similarity=0.446 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||.++|+++|+++|++||. |++|+|++ +||||+|++.++|++||+.||+..+ .
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--v~~v~~~~---------~~afV~f~~~~~a~~A~~~l~g~~~----~ 70 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGP--VIECDIVK---------DYAFVHMERAEDAVEAIRGLDNTEF----Q 70 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSC--CCEEEECS---------SEEEEEESCHHHHHHHHHHHTTEEE----T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEEC---------CEEEEEECCHHHHHHHHHHhCCCee----C
Confidence 3456789999999999999999999999999 99999985 4999999999999999999999887 5
Q ss_pred CceEEEeecCCCCCC
Q 013047 106 ERTVKVAFAEPLREP 120 (450)
Q Consensus 106 gr~i~v~~a~~~~~~ 120 (450)
++.|+|+++.++...
T Consensus 71 g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 71 GKRMHVQLSTSRLRT 85 (92)
T ss_dssp TEEEEEEESSCCCSC
T ss_pred CcEEEEEEccCCCCC
Confidence 899999999876654
No 195
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=2.4e-16 Score=133.10 Aligned_cols=82 Identities=20% Similarity=0.264 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCC-CeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVE-GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~-~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
..+.++|||+|||+++|+++|+++|++||.. .|++|+|+.++ +++++|||||+|++.++|++||+ ||+..+ .
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~--~g~~~G~afV~F~~~~~a~~Al~-~~g~~~----~ 86 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR--EGRQSGEAFVELESEDDVKLALK-KDRESM----G 86 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS--SSCEEEEEEEEBSSHHHHHHHGG-GTTEEE----T
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC--CCCCCeEEEEEECCHHHHHHHHh-cCCCeE----C
Confidence 3457899999999999999999999999861 26899999986 59999999999999999999998 898776 5
Q ss_pred CceEEEeecC
Q 013047 106 ERTVKVAFAE 115 (450)
Q Consensus 106 gr~i~v~~a~ 115 (450)
++.|+|.++.
T Consensus 87 gr~i~V~~a~ 96 (118)
T 2db1_A 87 HRYIEVFKSH 96 (118)
T ss_dssp TEEEEEEEEC
T ss_pred CeEEEEEECC
Confidence 8999998875
No 196
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.65 E-value=2.4e-16 Score=131.59 Aligned_cols=79 Identities=10% Similarity=0.078 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcC-CCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYG-VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G-~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....+|||+|||+++|+++|+++|++|| + |+.|+|+. ..++|||||+|++.++|++||+.||+.++ .
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~--v~~v~i~~-----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l----~ 93 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLE--TTFSSVNT-----RDFDGTGALEFPSEEILVEALERLNNIEF----R 93 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCC--CSEEECSS-----CSSSCCEEEEESSHHHHHHHHHHTTTEEE----T
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCe--eEEEEEEc-----CCCCCEEEEEECCHHHHHHHHHHcCCCEE----C
Confidence 34467999999999999999999999999 8 99998864 24789999999999999999999999988 6
Q ss_pred CceEEEeecCC
Q 013047 106 ERTVKVAFAEP 116 (450)
Q Consensus 106 gr~i~v~~a~~ 116 (450)
++.|+|.++..
T Consensus 94 Gr~i~V~~a~~ 104 (111)
T 2jvr_A 94 GSVITVERDDN 104 (111)
T ss_dssp TEEEEEEESCC
T ss_pred CeEEEEEECCC
Confidence 99999999864
No 197
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.2e-16 Score=123.81 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||.++|+++|+++|++||. |++|+|++ +||||+|.+.++|++||+.||+..+ .
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--v~~~~~~~---------~~afV~f~~~~~a~~A~~~l~g~~~----~ 69 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGR--VIECDVVK---------DYAFVHMEKEADAKAAIAQLNGKEV----K 69 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSC--EEEEEECS---------SCEEEEESCHHHHHHHHHHHTTCEE----T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCC--EEEEEEEC---------CEEEEEECCHHHHHHHHHHhCCCEE----C
Confidence 3456889999999999999999999999999 99999985 4999999999999999999999887 5
Q ss_pred CceEEEeecCCCCC
Q 013047 106 ERTVKVAFAEPLRE 119 (450)
Q Consensus 106 gr~i~v~~a~~~~~ 119 (450)
++.|+|.++.+...
T Consensus 70 g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 70 GKRINVELSTKGQK 83 (90)
T ss_dssp TEECEEEESCCCCC
T ss_pred CcEEEEEECCCCCC
Confidence 89999999987654
No 198
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3e-16 Score=131.10 Aligned_cols=79 Identities=20% Similarity=0.295 Sum_probs=73.2
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceE--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecC
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVI--------RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~--------~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g 197 (450)
...++|||+|||+++++++|+++|++||.|+ .|.|+.++.++++++||||+|++.++|++||+.||+..|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4568999999999999999999999999999 69999998899999999999999999999999999999999
Q ss_pred CeeEEEE
Q 013047 198 GNSKVKL 204 (450)
Q Consensus 198 ~~i~v~v 204 (450)
+.|+|.+
T Consensus 93 ~~l~V~~ 99 (113)
T 2cpe_A 93 SKLKVSL 99 (113)
T ss_dssp EECEEEC
T ss_pred CEEEEEE
Confidence 8765544
No 199
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.3e-16 Score=127.65 Aligned_cols=78 Identities=19% Similarity=0.450 Sum_probs=72.2
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST-AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~-g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
...++|||+|||+++++++|+++|++|| |+.|.|+.++.+ +++++||||+|++.++|++|| .||+..|.++.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999999999887 899999999999999999999 9999999998766655
Q ss_pred E
Q 013047 205 R 205 (450)
Q Consensus 205 ~ 205 (450)
.
T Consensus 91 a 91 (104)
T 1wi8_A 91 A 91 (104)
T ss_dssp C
T ss_pred c
Confidence 3
No 200
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.9e-16 Score=130.70 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
+..+|||+|||+++|+++|+++|++| . |++|+|+.|+ +|+++|||||+|++.++|++|| .+|+..+ .++.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~--v~~v~i~~d~--~g~~~G~afV~F~~~~~a~~Al-~~~~~~~----~gr~ 84 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-R--VDAVHLLKDH--VGRNNGNGLVKFLSPQDTFEAL-KRNRMLM----IQRY 84 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-C--CCEEEECCCT--TCCCCSEEEEECSSHHHHHHHH-HTTTEEE----TTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-C--eeEEEEEECC--CCCCCeEEEEEECCHHHHHHHH-hcCCCeE----CCeE
Confidence 35799999999999999999999999 7 9999999986 5999999999999999999999 6888766 5899
Q ss_pred EEEeecC
Q 013047 109 VKVAFAE 115 (450)
Q Consensus 109 i~v~~a~ 115 (450)
|.|..+.
T Consensus 85 i~V~~a~ 91 (109)
T 2dnn_A 85 VEVSPAT 91 (109)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9998774
No 201
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=3.7e-16 Score=124.20 Aligned_cols=79 Identities=11% Similarity=0.271 Sum_probs=73.2
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCC-cceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAK-RKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~-~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
..++|||+|||+++++++|+++|++||.|..|.|+.+..++. ++++|||+|++.++|++|++.||+..|.|+.|+|.+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457999999999999999999999999999999999887665 8999999999999999999999999999998777765
No 202
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.6e-16 Score=131.21 Aligned_cols=83 Identities=24% Similarity=0.360 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCC-CcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 27 SEDNDTLFVGNICNT-WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~-~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
...+++|||+|||++ +|+++|+++|++||. |++|+|++. ||||||+|++.++|++||+.|+...+.+ .
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~--V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~l--~ 90 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGK--IKNYILMRM-------KSQAFIEMETREDAMAMVDHCLKKALWF--Q 90 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSC--CSEEEEETT-------TTEEEEECSSHHHHHHHHHHHHHSCCCS--S
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCC--EEEEEEecC-------CCEEEEEECCHHHHHHHHHHhccCCceE--C
Confidence 445889999999998 999999999999999 999999853 5999999999999999999886543222 4
Q ss_pred CceEEEeecCCCCCC
Q 013047 106 ERTVKVAFAEPLREP 120 (450)
Q Consensus 106 gr~i~v~~a~~~~~~ 120 (450)
+++|+|.++..++..
T Consensus 91 Gr~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 91 GRCVKVDLSEKYKKL 105 (112)
T ss_dssp SSCCEEEEECSCSSS
T ss_pred CEEEEEEECcccccc
Confidence 899999999766543
No 203
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.64 E-value=1.1e-16 Score=123.49 Aligned_cols=75 Identities=24% Similarity=0.413 Sum_probs=67.9
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEE
Q 013047 32 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKV 111 (450)
Q Consensus 32 ~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v 111 (450)
+|||+|||.++|+++|+++|++||+ |++|+|+.++. ++.++|||||+|++.++|++|++. ++..+ .++.|+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~----~g~~l~v 72 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGE--VESIELPMDNK-TNKRRGFCFITFKEEEPVKKIMEK-KYHNV----GLSKCEI 72 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSC--CSEECCCCSCC-CSSSCCCEEEECSSSHHHHHHHTT-SSCCB----TTBCCCE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEEecCC-CCCcCCEEEEEECCHHHHHHHHHh-CCCeE----CCEEEEE
Confidence 6999999999999999999999999 99999999865 899999999999999999999985 66665 5888888
Q ss_pred eec
Q 013047 112 AFA 114 (450)
Q Consensus 112 ~~a 114 (450)
++|
T Consensus 73 ~~a 75 (75)
T 1iqt_A 73 KVA 75 (75)
T ss_dssp EEC
T ss_pred EEC
Confidence 765
No 204
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.9e-16 Score=129.61 Aligned_cols=82 Identities=23% Similarity=0.433 Sum_probs=74.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||.++|+++|+++|++||. |++|+|+.+ +|||||+|++.++|++||+.|++..+ .
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~--i~~v~i~~~-------~g~afV~f~~~~~a~~A~~~l~g~~~----~ 87 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPE-------KGYSFVRFSTHESAAHAIVSVNGTTI----E 87 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSC--EEEEEEETT-------TTEEEEEESSHHHHHHHHHHHTTCEE----T
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEeCC-------CCEEEEEECCHHHHHHHHHHcCCCEE----C
Confidence 4556889999999999999999999999999 999999975 48999999999999999999999877 5
Q ss_pred CceEEEeecCCCCCC
Q 013047 106 ERTVKVAFAEPLREP 120 (450)
Q Consensus 106 gr~i~v~~a~~~~~~ 120 (450)
++.|+|.|+.++...
T Consensus 88 g~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 88 GHVVKCYWGKESPDM 102 (109)
T ss_dssp TEECEEECCCCCCSS
T ss_pred CcEEEEEecCCCCCC
Confidence 899999999876553
No 205
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.9e-16 Score=134.70 Aligned_cols=82 Identities=23% Similarity=0.257 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCC--CCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGV--EGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 104 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~--~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~ 104 (450)
..+..+|||+|||+++|+++|+++|++||+ +.|++|+|+.+. +|+++|||||+|++.++|++||+. ++..+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~--~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l---- 92 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP--DGRPTGDAFVLFACEEYAQNALRK-HKDLL---- 92 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT--TSCEEEEEEECCSSHHHHHHHHTT-TTEES----
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC--CCCEeeEEEEEECCHHHHHHHHHh-CCCee----
Confidence 345789999999999999999999999987 113699999984 899999999999999999999986 77554
Q ss_pred CCceEEEeecC
Q 013047 105 PERTVKVAFAE 115 (450)
Q Consensus 105 ~gr~i~v~~a~ 115 (450)
.++.|+|..+.
T Consensus 93 ~gR~i~V~~a~ 103 (123)
T 2dha_A 93 GKRYIELFRST 103 (123)
T ss_dssp SSCEECCEEEC
T ss_pred CCeEEEEEECC
Confidence 47888887663
No 206
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=124.75 Aligned_cols=80 Identities=26% Similarity=0.444 Sum_probs=71.2
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhhc--CCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCccc
Q 013047 25 APSEDNDTLFVGNICNTWTKEAIKQKLKDY--GVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 102 (450)
Q Consensus 25 ~~~~~~~~lyV~nLp~~~te~dL~~~F~~~--G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~ 102 (450)
......++|||+|||+++|+++|+++|++| |. |++|++++ |||||+|.+.++|++||+.||+..+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~--v~~~~~~~---------g~afV~f~~~~~A~~A~~~l~g~~~-- 76 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGA--VERVKKIR---------DYAFVHFSNREDAVEAMKALNGKVL-- 76 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTC--EEEEEECS---------SEEEEEESSHHHHHHHHHHHSSEEE--
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcc--eEEEEEeC---------CeEEEEeCCHHHHHHHHHHhCCCEe--
Confidence 344567899999999999999999999999 77 99998753 7999999999999999999999877
Q ss_pred CCCCceEEEeecCCCCC
Q 013047 103 GHPERTVKVAFAEPLRE 119 (450)
Q Consensus 103 g~~gr~i~v~~a~~~~~ 119 (450)
.++.|+|.++.++..
T Consensus 77 --~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 77 --DGSPIEVTLAKPVDK 91 (99)
T ss_dssp --TTEEEEEECCCCCCC
T ss_pred --CCcEEEEEECCCCCC
Confidence 589999999987654
No 207
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.64 E-value=2.1e-16 Score=127.61 Aligned_cols=78 Identities=14% Similarity=0.194 Sum_probs=72.7
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
..++|||+|||+++++++|+++|++||.|+.+.++.+..++++++||||+|++.++|++||++||++.|.++.|+|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 457999999999999999999999999999999999988999999999999999999999999999999999876654
No 208
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.3e-16 Score=127.36 Aligned_cols=80 Identities=15% Similarity=0.211 Sum_probs=74.1
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
...++|||+|||+++++++|+++|++||.|+.+.++.+..++++++||||+|++.++|++||+.||+..|.++.|+|++.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 35689999999999999999999999999998889998889999999999999999999999999999999998776663
No 209
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.64 E-value=3.3e-16 Score=135.55 Aligned_cols=82 Identities=18% Similarity=0.248 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCC-CeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVE-GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~-~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
..+.++|||+|||+++|+++|+++|++||+. .|++|+|++|+ .++++|||||+|++.++|++||+ ||+..+ .
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~--~g~srG~aFV~F~~~e~a~~Al~-~~g~~l----~ 113 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR--EGRQSGEAFVELGSEDDVKMALK-KDRESM----G 113 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECS--SSCEEEEEEEECSSHHHHHHHHT-TTEEES----S
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECC--CCCCCeEEEEEECCHHHHHHHHh-cCCCEE----C
Confidence 3457899999999999999999999999961 15789999987 49999999999999999999999 999876 5
Q ss_pred CceEEEeecC
Q 013047 106 ERTVKVAFAE 115 (450)
Q Consensus 106 gr~i~v~~a~ 115 (450)
++.|+|.++.
T Consensus 114 gr~i~V~~a~ 123 (136)
T 2hgl_A 114 HRYIEVFKSH 123 (136)
T ss_dssp SSEEEEEECC
T ss_pred CEEEEEEECC
Confidence 8999998874
No 210
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.64 E-value=7.5e-16 Score=122.36 Aligned_cols=78 Identities=14% Similarity=0.337 Sum_probs=71.6
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+.++.+++++|||||+|++.++|++||+ +++..|+|+.|.|..
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 356899999999999999999999999999999999999999999999999999999999995 688899998766643
No 211
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.64 E-value=3.7e-16 Score=134.07 Aligned_cols=80 Identities=14% Similarity=0.262 Sum_probs=74.7
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||++||+..|+++.|+|.+.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999998666553
No 212
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.64 E-value=6.5e-16 Score=136.98 Aligned_cols=79 Identities=15% Similarity=0.271 Sum_probs=73.7
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccC--ceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYG--DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G--~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
..++|||+||++++|+++|+++|++|| .|+.|.|+.++.+++++|||||+|++.++|++||+.||+..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999999999999999877765
Q ss_pred E
Q 013047 205 R 205 (450)
Q Consensus 205 ~ 205 (450)
.
T Consensus 134 a 134 (156)
T 3n9u_C 134 A 134 (156)
T ss_dssp C
T ss_pred c
Confidence 4
No 213
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3e-16 Score=128.90 Aligned_cols=80 Identities=28% Similarity=0.518 Sum_probs=74.5
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+.++.++.+++||||+|++.++|++||+.||+..|.++.|+|.+.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999998766553
No 214
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.8e-16 Score=125.69 Aligned_cols=76 Identities=11% Similarity=0.197 Sum_probs=69.7
Q ss_pred CccEEEEcCCCCCchhHHHH----HhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 013047 127 HVKTVFLDGVPPHWKENQIR----DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~----~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v 202 (450)
..++|||+|||+++++++|+ ++|++||.|+.|.|+.++.+ ++||||+|++.++|++||+.||+..|.|+.|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45799999999999999999 99999999999999988765 889999999999999999999999999987666
Q ss_pred EEE
Q 013047 203 KLR 205 (450)
Q Consensus 203 ~v~ 205 (450)
.+.
T Consensus 85 ~~a 87 (96)
T 2dgx_A 85 SLA 87 (96)
T ss_dssp EEC
T ss_pred EEc
Confidence 554
No 215
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.64 E-value=1.1e-15 Score=135.62 Aligned_cols=106 Identities=23% Similarity=0.271 Sum_probs=91.5
Q ss_pred hHHHHHhhCCCcccCCcccccCCC------CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeE
Q 013047 4 LFLIYILIFPLKQICGKRCGTAPS------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 77 (450)
Q Consensus 4 ~~~~~le~~~~~~~~~k~~~~~~~------~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~ 77 (450)
-...+|+.+....+.++.+.+.+. ...++|||+|||.++|+++|+++|++||. |++|.|+.+.. ++.++|+
T Consensus 57 ~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~--i~~~~i~~~~~-~~~~~g~ 133 (168)
T 1b7f_A 57 DSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGS--IVQKNILRDKL-TGRPRGV 133 (168)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSC--EEEEEEEECTT-TCCEEEE
T ss_pred HHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCc--EEEEEEEEcCC-CCCcceE
Confidence 355677778888888998877543 35789999999999999999999999999 99999999875 8999999
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeec
Q 013047 78 AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 114 (450)
Q Consensus 78 aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a 114 (450)
|||+|.+.++|++|++.||+..+. + ..+.|+|++|
T Consensus 134 afV~f~~~~~A~~A~~~l~g~~~~-g-~~~~l~V~~A 168 (168)
T 1b7f_A 134 AFVRYNKREEAQEAISALNNVIPE-G-GSQPLSVRLA 168 (168)
T ss_dssp EEEEESSHHHHHHHHHHHTTCCCT-T-CSSCCEEEEC
T ss_pred EEEEECCHHHHHHHHHHhcCCEec-C-CCeEEEEEeC
Confidence 999999999999999999999772 1 2389999876
No 216
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.64 E-value=8.6e-16 Score=140.27 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=91.6
Q ss_pred HHHHHhhCCCcccCCcccccCCC--------------------------CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCC
Q 013047 5 FLIYILIFPLKQICGKRCGTAPS--------------------------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 58 (450)
Q Consensus 5 ~~~~le~~~~~~~~~k~~~~~~~--------------------------~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~ 58 (450)
...+| .+....+.++.+.+... ...++|||+|||.++|+++|+++|++||.
T Consensus 64 A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-- 140 (198)
T 2yh0_A 64 TTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGP-- 140 (198)
T ss_dssp HHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSC--
T ss_pred HHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCC--
Confidence 34455 56677777777765443 34589999999999999999999999999
Q ss_pred eeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCC
Q 013047 59 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 119 (450)
Q Consensus 59 V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~ 119 (450)
|++|+|+.++. ++.++|||||+|.+.++|++|++.||+..+ .++.|+|.++.++..
T Consensus 141 v~~~~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 141 LKAFNLVKDSA-TGLSKGYAFCEYVDINVTDQAIAGLNGMQL----GDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEEECTT-TCSEEEEEEEEESSSSHHHHHHHHHTTCEE----TTEECEEEESCCCCC
T ss_pred ccEEEEeecCC-CCCcceEEEEEECCHHHHHHHHHHcCCCEE----CCEEEEEEECCCCCC
Confidence 99999999865 899999999999999999999999999887 589999999987654
No 217
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=125.06 Aligned_cols=78 Identities=18% Similarity=0.316 Sum_probs=70.4
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+.+..+ +++||||+|++.++|++||+.||+..|.++.|+|.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 45689999999999999999999999999999999998543 6899999999999999999999999999987655553
No 218
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.63 E-value=8.4e-16 Score=123.32 Aligned_cols=78 Identities=18% Similarity=0.348 Sum_probs=71.7
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+.+ ++++++||||+|++.++|++||+.||+..|.++.|+|.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35689999999999999999999999999999999874 7889999999999999999999999999999998766654
No 219
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.63 E-value=1.2e-15 Score=125.26 Aligned_cols=73 Identities=26% Similarity=0.510 Sum_probs=65.8
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
..+.++|||+|||+++|+++|+++|++||.|+.|.|+ ++||||+|++.++|++||+.||+..|.++.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3466899999999999999999999999999999985 45999999999999999999999999998766655
Q ss_pred E
Q 013047 205 R 205 (450)
Q Consensus 205 ~ 205 (450)
.
T Consensus 80 a 80 (103)
T 2dgu_A 80 A 80 (103)
T ss_dssp C
T ss_pred c
Confidence 4
No 220
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=8.2e-16 Score=121.52 Aligned_cols=76 Identities=24% Similarity=0.410 Sum_probs=68.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHh-CCCCcccCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL-QKPDVVFGHP 105 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l-~~~~~~~g~~ 105 (450)
....++|||+|||.++|+++|+++|++||. |++|+|+++ +|||||+|++.++|++|++.| ++..+ .
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~--i~~~~~~~~-------kg~afV~f~~~~~A~~a~~~l~~~~~~----~ 75 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGE--IRTITVVQR-------QQCAFIQFATRQAAEVAAEKSFNKLIV----N 75 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSC--EEEEEEEGG-------GTEEEEEESSHHHHHHHHHTTTTTCEE----T
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCC--EeEEEEECC-------CCEEEEEECCHHHHHHHHHHhcCCeeE----C
Confidence 456789999999999999999999999999 999999974 589999999999999999998 87766 5
Q ss_pred CceEEEeecC
Q 013047 106 ERTVKVAFAE 115 (450)
Q Consensus 106 gr~i~v~~a~ 115 (450)
++.|+|+|++
T Consensus 76 g~~l~v~~ak 85 (85)
T 2ytc_A 76 GRRLNVKWGR 85 (85)
T ss_dssp TEECCEEECC
T ss_pred CCEEEEEecC
Confidence 8999999873
No 221
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.63 E-value=8e-16 Score=122.58 Aligned_cols=77 Identities=18% Similarity=0.383 Sum_probs=72.3
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
..++|||+|||+++++++|+++|++||.|+.|.|+.+..+++++++|||+|++.++|++|+ .||+..|.++.|+|.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~ 81 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIP 81 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEE
Confidence 3579999999999999999999999999999999999889999999999999999999999 9999999998866655
No 222
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=2.1e-17 Score=138.95 Aligned_cols=87 Identities=29% Similarity=0.401 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeE--------EEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVEN--------INLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 98 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~--------i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~ 98 (450)
..++++|||+|||.++|+++|+++|++||. |++ |+|+.++. +++++|||||+|.+.++|++||+.||+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~~~~~~~~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGI--IKTNKKTGQPMINLYTDRE-TGKLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 346789999999999999999999999999 998 89998865 8999999999999999999999999998
Q ss_pred CcccCCCCceEEEeecCCCCCC
Q 013047 99 DVVFGHPERTVKVAFAEPLREP 120 (450)
Q Consensus 99 ~~~~g~~gr~i~v~~a~~~~~~ 120 (450)
.+ .++.|+|.++.++...
T Consensus 81 ~~----~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 81 EF----SGNPIKVSFATRRADF 98 (116)
Confidence 87 5899999999876543
No 223
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.5e-16 Score=128.24 Aligned_cols=77 Identities=16% Similarity=0.400 Sum_probs=71.4
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v 202 (450)
....++|||+|||+++++++|+++|++||.|+.|.|+.++.++.+++||||+|++.++|++||+. ++..|.++.|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 34668999999999999999999999999999999999999999999999999999999999988 999999986444
No 224
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.7e-16 Score=130.18 Aligned_cols=78 Identities=13% Similarity=0.263 Sum_probs=73.0
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
..++|||+||++++++++|+++|++||.|+.|.|+.++.+++++|||||+|++.++|++|| .||+..|.++.|.|.+.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 4579999999999999999999999999999999999999999999999999999999999 99999999987666554
No 225
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=1.4e-15 Score=135.82 Aligned_cols=82 Identities=29% Similarity=0.529 Sum_probs=74.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
..++|||+|||.++|+++|+++|++||. |++|+|+.++ ++.++|||||+|.+.++|++|++.||+..+..+ .++.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~--i~~v~~~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g-~~~~ 168 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQ--IEECRILRGP--DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG-CSSP 168 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTT-CSSC
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCC--EEEEEEEECC--CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCC-CCCC
Confidence 5689999999999999999999999999 9999999986 789999999999999999999999999887533 3599
Q ss_pred EEEeecC
Q 013047 109 VKVAFAE 115 (450)
Q Consensus 109 i~v~~a~ 115 (450)
|+|+||+
T Consensus 169 l~V~~ad 175 (175)
T 3nmr_A 169 MVVKFAD 175 (175)
T ss_dssp CEEEECC
T ss_pred eEEEecC
Confidence 9999884
No 226
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=5.5e-16 Score=126.82 Aligned_cols=78 Identities=15% Similarity=0.317 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
....++|||+|||.++|+++|+++|++||. |++|+|++ ++|||||+|.+.++|++|++.||+..+ .+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~--i~~~~~~~-------~~g~afV~f~~~~~A~~Ai~~l~g~~~----~g 90 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGF--ILDFKHYP-------EKGCCFIKYDTHEQAAVCIVALANFPF----QG 90 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSC--CSEEEEET-------TTTEEEEECSSHHHHHHHHHHHTTCEE----TT
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCC--EEEEEEec-------CCCEEEEEECCHHHHHHHHHHhCCCeE----CC
Confidence 445789999999999999999999999999 99999984 359999999999999999999999887 58
Q ss_pred ceEEEeecCCC
Q 013047 107 RTVKVAFAEPL 117 (450)
Q Consensus 107 r~i~v~~a~~~ 117 (450)
+.|+|.|+.++
T Consensus 91 ~~l~V~~a~~~ 101 (101)
T 2la4_A 91 RNLRTGWGKER 101 (101)
T ss_dssp EECCCCBCCCC
T ss_pred eEEEEEeccCC
Confidence 99999998753
No 227
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.63 E-value=8.4e-16 Score=133.03 Aligned_cols=80 Identities=20% Similarity=0.452 Sum_probs=74.6
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....++|||+|||.++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+.||+..|.++.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999998766654
No 228
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.63 E-value=9e-16 Score=127.49 Aligned_cols=79 Identities=18% Similarity=0.328 Sum_probs=71.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||.++|+++|+++|++||. |++|+|+ +|||||+|.+.++|++|++.||+..+ .
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~--i~~v~i~---------kg~afV~f~~~~~A~~Ai~~l~g~~~----~ 91 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGP--MKEVKIL---------NGFAFVEFEEAESAAKAIEEVHGKSF----A 91 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSC--CCEEEEE---------TTEEEEECSSHHHHHHHHHHHTTCEE----T
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCC--EEEEEEE---------CCEEEEEECCHHHHHHHHHHcCCCEE----C
Confidence 3456889999999999999999999999999 9999998 38999999999999999999999987 5
Q ss_pred CceEEEeecCCCCC
Q 013047 106 ERTVKVAFAEPLRE 119 (450)
Q Consensus 106 gr~i~v~~a~~~~~ 119 (450)
++.|+|.++.++..
T Consensus 92 g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 92 NQPLEVVYSKLPAK 105 (108)
T ss_dssp TEECEEESCSCCC-
T ss_pred CeEEEEEEecCCCC
Confidence 89999999977553
No 229
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.2e-16 Score=124.90 Aligned_cols=75 Identities=21% Similarity=0.416 Sum_probs=70.9
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~ 201 (450)
..++|||+|||+++++++|+++|++||.|+.|.|+.++.++.+++||||+|++.++|++||+.||+..|.++.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 78 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK 78 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEe
Confidence 567999999999999999999999999999999999998999999999999999999999999999999887643
No 230
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=126.01 Aligned_cols=65 Identities=22% Similarity=0.448 Sum_probs=61.7
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecC
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g 197 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+.+ +||||+|++.++|++||++||+++|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 35689999999999999999999999999999999875 899999999999999999999999999
No 231
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=5.3e-16 Score=125.58 Aligned_cols=82 Identities=21% Similarity=0.336 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||.++|+++|+++|++||. |+.| . .++.++|||||+|.+.++|++||+.|++..+ .
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~--v~~~---~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~ 79 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALE--IRLV---S---QDGKSKGIAYIEFKSEADAEKNLEEKQGAEI----D 79 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEE--ECCE---E---ETTEEEEEEEEEESSHHHHHHHHHHTTEEEE----T
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCc--EEEe---C---CCCCcceEEEEEECCHHHHHHHHHHhCCCEE----C
Confidence 4456789999999999999999999999997 7665 2 1789999999999999999999999999877 5
Q ss_pred CceEEEeecCCCCC
Q 013047 106 ERTVKVAFAEPLRE 119 (450)
Q Consensus 106 gr~i~v~~a~~~~~ 119 (450)
++.|+|.++.++..
T Consensus 80 g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 80 GRSVSLYYTGEKGG 93 (96)
T ss_dssp TEEEEEEECSSSCC
T ss_pred CeEEEEEEcCCCCC
Confidence 89999999977654
No 232
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=122.93 Aligned_cols=83 Identities=24% Similarity=0.259 Sum_probs=72.4
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEE-EEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccC
Q 013047 25 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI-NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 103 (450)
Q Consensus 25 ~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i-~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g 103 (450)
......++|||+|||+++|+++|+++|++||. |++| .|+.++. + +.|||+|.+.++|++||+.||+..+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--v~~~~~i~~~~~-~----~~afV~f~~~~~a~~Ai~~l~g~~~--- 79 (96)
T 2e44_A 10 PKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGV--VESCEQVNTDSE-T----AVVNVTYSSKDQARQALDKLNGFQL--- 79 (96)
T ss_dssp CCCCSCCCEEEEEECSSSCHHHHHHHHHHHSC--EEEEEEECCSSS-S----EEEEEEESSHHHHHHHHHHHTTCBC---
T ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCC--eEEEEEeecCCC-C----CEEEEEECCHHHHHHHHHHhCCCEE---
Confidence 34455789999999999999999999999999 9999 4777643 3 3499999999999999999999987
Q ss_pred CCCceEEEeecCCCC
Q 013047 104 HPERTVKVAFAEPLR 118 (450)
Q Consensus 104 ~~gr~i~v~~a~~~~ 118 (450)
.++.|+|+++.++.
T Consensus 80 -~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 80 -ENFTLKVAYIPDEM 93 (96)
T ss_dssp -SSCBCEEEECCCCC
T ss_pred -CCcEEEEEEcCccc
Confidence 58999999998763
No 233
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.62 E-value=2.1e-15 Score=133.47 Aligned_cols=107 Identities=22% Similarity=0.317 Sum_probs=90.7
Q ss_pred hhHHHHHhhCCCcccCCcccccCCCC------CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeee
Q 013047 3 QLFLIYILIFPLKQICGKRCGTAPSE------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76 (450)
Q Consensus 3 ~~~~~~le~~~~~~~~~k~~~~~~~~------~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG 76 (450)
+-...+|+.+.+..+.++.+.+.... ..++|||+|||.++|+++|+++|++||. |++|+|+.+.. ++.++|
T Consensus 55 ~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~--i~~~~i~~~~~-~g~~~g 131 (167)
T 1fxl_A 55 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR--IITSRILVDQV-TGVSRG 131 (167)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECTT-TCCEEE
T ss_pred HHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCC--EeEEEEEecCC-CCCccc
Confidence 34567778788888999988776543 3578999999999999999999999999 99999999865 899999
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeec
Q 013047 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 114 (450)
Q Consensus 77 ~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a 114 (450)
||||+|.+.++|++|++.||+..+. + ....|+|+||
T Consensus 132 ~afV~f~~~~~A~~A~~~l~g~~~~-g-~~~~i~v~~A 167 (167)
T 1fxl_A 132 VGFIRFDKRIEAEEAIKGLNGQKPS-G-ATEPITVKFA 167 (167)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCCCT-T-CSSCCEEEEC
T ss_pred eEEEEeCCHHHHHHHHHHhcCCccC-C-CccceEEEeC
Confidence 9999999999999999999999762 1 1245888875
No 234
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=125.68 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=69.2
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
..++|||+|||+++|+++|+++|++||. +.|.|+.++ +++++|||||+|++.++|++|| ++|++.|.++.|+|.+.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLN 89 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEEC
Confidence 5579999999999999999999999995 499999997 8999999999999999999999 58999999998766553
No 235
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.62 E-value=3.2e-16 Score=134.71 Aligned_cols=80 Identities=16% Similarity=0.280 Sum_probs=74.1
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEE--EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC----eecCC
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR--IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK----EFSDG 198 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~--v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~----~~~g~ 198 (450)
....++|||+||++++|+++|+++|++||.|+. |.|+.++.+++++|||||+|++. +|++||+.||+. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 346689999999999999999999999999976 99999999999999999999999 999999999999 99999
Q ss_pred eeEEEEE
Q 013047 199 NSKVKLR 205 (450)
Q Consensus 199 ~i~v~v~ 205 (450)
.|.|.+.
T Consensus 99 ~l~V~~a 105 (131)
T 2m2b_A 99 TINVEFA 105 (131)
T ss_dssp CCCCEEC
T ss_pred EEEEEEC
Confidence 8777654
No 236
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=8e-16 Score=139.25 Aligned_cols=82 Identities=22% Similarity=0.306 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
...++|||+|||+++|+++|+++|++||. |++|+|+.+. ++.++|||||+|++.++|++||+.||+..+ .++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~--I~~v~i~~d~--~g~~kG~afV~F~~~~~A~~Ai~~lng~~l----~Gr 157 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGT--LKKAAVDYDR--SGRSLGTADVHFERRADALKAMKQYKGVPL----DGR 157 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSC--CSEEEECCCT--TSSCSCCEEEEESCHHHHHHHHHHSTTCBC----SSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEEECC--CCCEeeEEEEEeCCHHHHHHHHHHhCCCEE----CCE
Confidence 44689999999999999999999999999 9999999986 899999999999999999999999999877 589
Q ss_pred eEEEeecCCC
Q 013047 108 TVKVAFAEPL 117 (450)
Q Consensus 108 ~i~v~~a~~~ 117 (450)
.|+|+++...
T Consensus 158 ~l~V~~a~~~ 167 (177)
T 2f3j_A 158 PMDIQLVASQ 167 (177)
T ss_dssp BCEEEEESSG
T ss_pred EEEEEEecCC
Confidence 9999998654
No 237
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.62 E-value=1.4e-15 Score=129.22 Aligned_cols=82 Identities=7% Similarity=0.175 Sum_probs=75.9
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....++|||+||++++++++|+++|++||.|+.|.|+.+. ++++++||||+|++.++|++||+.||+..|.++.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3466899999999999999999999999999999999997 899999999999999999999999999999999877777
Q ss_pred EEe
Q 013047 205 RAR 207 (450)
Q Consensus 205 ~~~ 207 (450)
...
T Consensus 111 a~~ 113 (124)
T 2kt5_A 111 VAS 113 (124)
T ss_dssp ECC
T ss_pred eCC
Confidence 644
No 238
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=1.7e-16 Score=137.81 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
....++|||+|||+++|+++|+++|++||+ ++|+|+.|+ +++++|||||+|++.++|++|| ++|+..+ .+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~Gi---~~v~i~~d~--~g~srGfaFV~F~~~e~A~~Al-~~~g~~l----~g 112 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLNP---VRVHIEIGP--DGRVTGEADVEFATHEEAVAAM-SKDRANM----QH 112 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCCC---SEEECCCSS--SSCSSCCCEEECSHHHHHHHHT-TCCSCSS----SS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC---eEEEEEECC--CCCCceEEEEEeCCHHHHHHHH-hhCCCEE----CC
Confidence 445789999999999999999999999994 499999986 5999999999999999999999 7888776 58
Q ss_pred ceEEEeecCCCCC
Q 013047 107 RTVKVAFAEPLRE 119 (450)
Q Consensus 107 r~i~v~~a~~~~~ 119 (450)
+.|+|..+.+...
T Consensus 113 R~i~V~~a~~~~~ 125 (139)
T 2hgn_A 113 RYIELFLNSTTGA 125 (139)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 8999988865543
No 239
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=124.93 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=66.9
Q ss_pred CCccEEEEcCCCC-CchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC--eecCCeeEE
Q 013047 126 AHVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK--EFSDGNSKV 202 (450)
Q Consensus 126 ~~~~~lfV~nLp~-~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~--~~~g~~i~v 202 (450)
.+.++|||+|||+ ++|+++|+++|++||.|+.|.|+.+ ++||||+|++.++|++||+.||+. .|.|+.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3678999999999 9999999999999999999999864 589999999999999999999864 589998777
Q ss_pred EEEE
Q 013047 203 KLRA 206 (450)
Q Consensus 203 ~v~~ 206 (450)
.+..
T Consensus 87 ~~a~ 90 (102)
T 1x4d_A 87 HLSQ 90 (102)
T ss_dssp EEEC
T ss_pred EECC
Confidence 6654
No 240
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.2e-15 Score=124.97 Aligned_cols=76 Identities=16% Similarity=0.370 Sum_probs=68.5
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
...++|||+|||+++|+++|+++|++||.|+.|.|..+ +.+++||||+|++.++|++||+.||+..|.++.|+|.+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 35689999999999999999999999999999999654 45799999999999999999999999999998765554
No 241
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.62 E-value=3.3e-16 Score=120.87 Aligned_cols=74 Identities=16% Similarity=0.381 Sum_probs=69.7
Q ss_pred EEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 130 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 130 ~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
+|||+|||+++++++|+++|++||.|+.|.|+.++.+++++|||||+|++.++|++|++ |++..|.|+.+.|..
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEe
Confidence 58999999999999999999999999999999998899999999999999999999997 999999999876653
No 242
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.62 E-value=9.7e-16 Score=130.13 Aligned_cols=78 Identities=18% Similarity=0.358 Sum_probs=73.0
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
..++|||+||++++++++|+++|++||.|+.|.|+.++.++.+++||||+|++.++|++|| +||+..|.++.|+|.+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 4589999999999999999999999999999999999889999999999999999999999 89999999988766653
No 243
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=126.30 Aligned_cols=80 Identities=16% Similarity=0.343 Sum_probs=72.8
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCc-eEEEEEE-ecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CCeecCCeeEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGD-VIRIVLA-RNMSTAKRKDYGFIDFSTHEAAVACINAIN--NKEFSDGNSKV 202 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~-v~~v~i~-~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~--g~~~~g~~i~v 202 (450)
..++|||+|||+++++++|+++|++||. |+.|.|+ .+..+++++|||||+|++.++|++||+.|+ +..|.++.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4579999999999999999999999998 9999998 788888999999999999999999999996 58999998776
Q ss_pred EEEE
Q 013047 203 KLRA 206 (450)
Q Consensus 203 ~v~~ 206 (450)
.+..
T Consensus 87 ~~a~ 90 (109)
T 2dis_A 87 DWAE 90 (109)
T ss_dssp EESC
T ss_pred EEcC
Confidence 6643
No 244
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.62 E-value=4e-16 Score=127.89 Aligned_cols=81 Identities=25% Similarity=0.433 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
.+++|||+|||.++|+++|+++|++||. |++|+|+.++ +++++|||||+|++.++|++||+ ++..+ .++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~Ai~--~~~~~----~g~~ 77 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGS--VKEVKIITDR--TGVSKGYGFVSFYNDVDVQKIVE--SQINF----HGKK 77 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSC--EEEEEEEECT--TSCEEEEEEEEESSCCCHHHHTT--CCCEE----TTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCC--eEEEEEEECC--CCCccceEEEEECCHHHHHHHHh--CCCeE----CCEE
Confidence 4689999999999999999999999999 9999999996 89999999999999999999998 66665 5899
Q ss_pred EEEeecCCCCC
Q 013047 109 VKVAFAEPLRE 119 (450)
Q Consensus 109 i~v~~a~~~~~ 119 (450)
|.|.++.++..
T Consensus 78 l~v~~a~~~~~ 88 (102)
T 2xs2_A 78 LKLGPAIRKQN 88 (102)
T ss_dssp CEEEEEEECC-
T ss_pred EEEEECCcCcc
Confidence 99998876554
No 245
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.62 E-value=2e-15 Score=133.86 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
....+|||+||++++|+++|+++|++||. |++|+|+.+ .++|||||+|++.++|++|++.||+.+|.- .++
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~--V~~V~i~~k-----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g--~g~ 114 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGT--VLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYN--ACC 114 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSC--EEEEEEEES-----SSCEEEEEEESCHHHHHHHHHHSTTBCSSS--SCS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCC--EEEEEEEeC-----CCCCEEEEEECCHHHHHHHHHHhCCCEecC--CCc
Confidence 33457899999999999999999999999 999999754 257999999999999999999999998741 148
Q ss_pred eEEEeecCCCCC
Q 013047 108 TVKVAFAEPLRE 119 (450)
Q Consensus 108 ~i~v~~a~~~~~ 119 (450)
+|+|+|++++..
T Consensus 115 ~L~V~~Ak~~~l 126 (164)
T 1sjr_A 115 TLRIDFSKLTSL 126 (164)
T ss_dssp CEEEEECSSSSC
T ss_pred EEEEEEecCCcc
Confidence 999999987643
No 246
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.62 E-value=1.6e-15 Score=156.12 Aligned_cols=83 Identities=25% Similarity=0.444 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
...++|||+|||++||+++|+++|++||+ |+.|+|+.++. |++++|||||+|.+.++|++||+.||+..| .++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~--I~~v~i~~d~~-tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i----~gr 172 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGP--IKRIHMVYSKR-SGKPRGYAFIEYEHERDMHSAYKHADGKKI----DGR 172 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCC--eeEEEeeccCC-CCCccceEEEeeccHHHHHHHHHHcCCCEE----CCE
Confidence 34689999999999999999999999999 99999999875 899999999999999999999999999987 589
Q ss_pred eEEEeecCCC
Q 013047 108 TVKVAFAEPL 117 (450)
Q Consensus 108 ~i~v~~a~~~ 117 (450)
.|+|.++.++
T Consensus 173 ~i~V~~a~~~ 182 (437)
T 3pgw_S 173 RVLVDVERGR 182 (437)
T ss_pred EEEEEEeCCC
Confidence 9999999754
No 247
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.61 E-value=2.2e-15 Score=137.33 Aligned_cols=108 Identities=21% Similarity=0.280 Sum_probs=85.8
Q ss_pred HHHHHhhCCCcccCCcccccCCCC------------CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCC
Q 013047 5 FLIYILIFPLKQICGKRCGTAPSE------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEG 72 (450)
Q Consensus 5 ~~~~le~~~~~~~~~k~~~~~~~~------------~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg 72 (450)
...+|+. .+..+.++.+.+.... ..++|||+|||.++|+++|+++|++||. |++|+|+.+.. ++
T Consensus 68 A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~-~g 143 (196)
T 1l3k_A 68 VDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK--IEVIEIMTDRG-SG 143 (196)
T ss_dssp HHHHHHT-CSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSC--EEEEEEEECTT-TC
T ss_pred HHHHHhc-CCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCC--eEEEEEeecCC-CC
Confidence 3455555 5566778777665432 2479999999999999999999999999 99999999865 89
Q ss_pred CeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCCCC
Q 013047 73 LSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD 121 (450)
Q Consensus 73 ~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~~~ 121 (450)
.++|||||+|.+.++|++||+. ++..+ .++.|.|.++.++.+..
T Consensus 144 ~~~g~afV~F~~~~~A~~A~~~-~~~~~----~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 144 KKRGFAFVTFDDHDSVDKIVIQ-KYHTV----NGHNCEVRKALSKQEMA 187 (196)
T ss_dssp CEEEEEEEEESSHHHHHHHHHC-SCCEE----TTEECEEEECC------
T ss_pred CccceEEEEECCHHHHHHHHHh-CCcEE----CCEEEEEEecCChhHhc
Confidence 9999999999999999999986 66655 58999999998876653
No 248
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.7e-15 Score=123.06 Aligned_cols=78 Identities=18% Similarity=0.435 Sum_probs=70.1
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....++|||+|||+++++++|+++|++||.|+.|.|+.++.+++++|||||+|++.++|++||+ +++.|.++.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3456799999999999999999999999999999999999999999999999999999999998 47789888655444
No 249
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=4.1e-16 Score=120.81 Aligned_cols=75 Identities=16% Similarity=0.367 Sum_probs=71.0
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|+|||+|++.++|++|++.++ ..++|+.++|.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 379999999999999999999999999999999998899999999999999999999999999 999999877765
No 250
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=127.58 Aligned_cols=79 Identities=18% Similarity=0.381 Sum_probs=72.0
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....++|||+|||+++++++|+++|++||.|+.|.|+.++.+++++|||||+|++.++|++||+. ++..|.++.|.|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 33568999999999999999999999999999999999999999999999999999999999987 99999998655443
No 251
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.61 E-value=1.5e-15 Score=145.83 Aligned_cols=111 Identities=22% Similarity=0.210 Sum_probs=100.4
Q ss_pred hHHHHHhhCCCcccCCcccccCCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeC
Q 013047 4 LFLIYILIFPLKQICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 83 (450)
Q Consensus 4 ~~~~~le~~~~~~~~~k~~~~~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~ 83 (450)
-...+|+.+....+.++.+.+......++|||+|||.++|+++|+++|++||. |++|+|+.+. ++.++|||||+|.
T Consensus 70 ~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~--i~~v~i~~~~--~g~~~g~afV~f~ 145 (261)
T 3sde_A 70 LAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGP--VEKAVVVVDD--RGRATGKGFVEFA 145 (261)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEEET--TSCEEEEEEEEES
T ss_pred HHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHHHHHHHHhcCC--eEEEEeeeCC--CCCcCcEEEEEeC
Confidence 35667888899999999999999999999999999999999999999999999 9999999984 8999999999999
Q ss_pred CHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCC
Q 013047 84 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 118 (450)
Q Consensus 84 ~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~ 118 (450)
+.++|++||+.|++..+++...+++|.|.++....
T Consensus 146 ~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 146 AKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp SHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred CHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 99999999999977667665568999999987653
No 252
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.1e-15 Score=123.89 Aligned_cols=80 Identities=19% Similarity=0.279 Sum_probs=69.6
Q ss_pred CCCCCCeEEEcCCCC-CCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCC
Q 013047 26 PSEDNDTLFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 104 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~-~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~ 104 (450)
...++++|||+|||. ++|+++|+++|++||. |++|+|. +|||||+|.+.++|++||+.|++..+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~--v~~v~i~---------~g~afV~f~~~~~A~~A~~~l~g~~~---- 70 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGH--IMQINIK---------NAFGFIQFDNPQSVRDAIECESQEMN---- 70 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCC--CCEEEEE---------TTEEEEEESCHHHHHHHHHHHTCSSC----
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCC--EEEEEEe---------CCEEEEEECCHHHHHHHHHHcCCCee----
Confidence 345688999999998 9999999999999999 9999985 38999999999999999999999887
Q ss_pred CCceEEEeecCCCCCC
Q 013047 105 PERTVKVAFAEPLREP 120 (450)
Q Consensus 105 ~gr~i~v~~a~~~~~~ 120 (450)
.++.|+|.++.++...
T Consensus 71 ~g~~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 71 FGKKLILEVSSSNARP 86 (96)
T ss_dssp BTTTBCEEEEECCCC-
T ss_pred CCcEEEEEEcCcCCCC
Confidence 4899999999765543
No 253
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=2.8e-15 Score=122.00 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=69.4
Q ss_pred CCCCCCCeEEEcCCCC-CCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccC
Q 013047 25 APSEDNDTLFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 103 (450)
Q Consensus 25 ~~~~~~~~lyV~nLp~-~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g 103 (450)
.....+++|||+|||. ++|+++|+++|++||. |++|+|. +|||||+|.+.++|++|++.||+..+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~--v~~v~i~---------~g~afV~f~~~~~A~~Ai~~l~g~~~--- 82 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGH--IMQINIK---------NAFGFIQFDNPQSVRDAIEXESQEMN--- 82 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSC--EEEEEEC---------SSEEEEEESSHHHHHHHHHHHTTSEE---
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCC--EEEEEEe---------CCEEEEEECCHHHHHHHHHHcCCCEE---
Confidence 3445689999999998 9999999999999999 9999984 48999999999999999999999877
Q ss_pred CCCceEEEeecCCC
Q 013047 104 HPERTVKVAFAEPL 117 (450)
Q Consensus 104 ~~gr~i~v~~a~~~ 117 (450)
.++.|+|+++..+
T Consensus 83 -~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 83 -FGKKLILEVSSSN 95 (97)
T ss_dssp -TTEECEEEECCCC
T ss_pred -CCEEEEEEecCCC
Confidence 5899999998754
No 254
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.61 E-value=7.7e-16 Score=120.79 Aligned_cols=72 Identities=18% Similarity=0.344 Sum_probs=66.7
Q ss_pred cEEEEcCCCCCc------hhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCC-eeE
Q 013047 129 KTVFLDGVPPHW------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG-NSK 201 (450)
Q Consensus 129 ~~lfV~nLp~~~------te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~-~i~ 201 (450)
++|||+|||+.+ ++++|+++|++||.|+.|.|+ +.+++++|||||+|++.++|++||+.|||..|.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 789999999999999999987 46789999999999999999999999999999998 765
Q ss_pred E
Q 013047 202 V 202 (450)
Q Consensus 202 v 202 (450)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 4
No 255
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.5e-15 Score=123.79 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=70.8
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR-IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~-v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
...++|||+|||+++|+++|+++|++||.|+. |.|+.+ .+++++|||||+|++.++|++||+. +++.|.++.|.|..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 35689999999999999999999999999987 888888 7899999999999999999999987 99999999876655
Q ss_pred E
Q 013047 205 R 205 (450)
Q Consensus 205 ~ 205 (450)
.
T Consensus 91 ~ 91 (104)
T 1wg5_A 91 S 91 (104)
T ss_dssp E
T ss_pred C
Confidence 3
No 256
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=120.40 Aligned_cols=76 Identities=22% Similarity=0.334 Sum_probs=70.4
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
..++|||+|||+++++++|+++|++| .|+.|.|+.+ .+++++|||||+|++.++|++||+ ||+..|.++.|.|.+.
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 56799999999999999999999999 9999999999 789999999999999999999999 9999999987665553
No 257
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=132.57 Aligned_cols=85 Identities=25% Similarity=0.319 Sum_probs=73.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeE--------EEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVEN--------INLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 97 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~--------i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~ 97 (450)
....+++|||+|||+++|+++|+++|++||. |++ |++.. ++.++|||||+|.+.++|++||+.||+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~--i~~~~~~~~~di~~~~----~g~~~g~afV~f~~~~~A~~Ai~~lng 114 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVD--FSSETQRIMFDIRLMK----EGRMKGQAFIGLPNEKAAAKALKEANG 114 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCC--TTCHHHHHHCEEEEEE----ETTTEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCC--cccccccceeeEEecc----CCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 3556889999999999999999999999998 776 44443 788999999999999999999999999
Q ss_pred CCcccCCCCceEEEeecCCCCCC
Q 013047 98 PDVVFGHPERTVKVAFAEPLREP 120 (450)
Q Consensus 98 ~~~~~g~~gr~i~v~~a~~~~~~ 120 (450)
..+ .++.|+|.++.+....
T Consensus 115 ~~~----~g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 115 YVL----FGKPMVVQFARSARPK 133 (143)
T ss_dssp BEE----TTEECEEEECCCSCC-
T ss_pred CEe----CCcEEEEEECCCCCCc
Confidence 887 5899999999765543
No 258
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.60 E-value=3.2e-16 Score=125.35 Aligned_cols=78 Identities=17% Similarity=0.395 Sum_probs=72.4
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEEe
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 207 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~~ 207 (450)
++|||+|||.++++++|+++|++||.|+.|.|+.++.+++++|||||+|++.+ |++|++.||+..|.|+.|+|.++..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 58999999999999999999999999999999999999999999999999999 9999999999999999887776543
No 259
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.4e-16 Score=126.25 Aligned_cols=72 Identities=17% Similarity=0.308 Sum_probs=64.7
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--CeecCCeeEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN--KEFSDGNSKVKL 204 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g--~~~~g~~i~v~v 204 (450)
..++|||+|||+++|+++|+++|++||.|++|.|+.+ +|||||+|++.++|++||+.|++ .+|.|+.|.|.+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 5689999999999999999999999999999999864 79999999999999999998864 789998755544
No 260
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.60 E-value=1.9e-15 Score=125.62 Aligned_cols=76 Identities=24% Similarity=0.376 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCCC-CcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 29 DNDTLFVGNICNT-WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 29 ~~~~lyV~nLp~~-~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
..++|||+|||++ +|+++|+++|++||. |++|+| ++|||||+|++.++|++||+.|++..+ .++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~--v~~v~i---------~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~ 90 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGR--VAGCSV---------HKGYAFVQYSNERHARAAVLGENGRVL----AGQ 90 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSC--CSEEEE---------ETTEEEEECSSSHHHHHHHHHHTTCEE----TTE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCC--eEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCEE----CCe
Confidence 4589999999999 999999999999999 999998 348999999999999999999999887 589
Q ss_pred eEEEeecCCCCC
Q 013047 108 TVKVAFAEPLRE 119 (450)
Q Consensus 108 ~i~v~~a~~~~~ 119 (450)
.|+|.++...+.
T Consensus 91 ~l~V~~a~~~~~ 102 (110)
T 1wf1_A 91 TLDINMAGEPKP 102 (110)
T ss_dssp ECCEEESCCCCS
T ss_pred EEEEEECCCCCC
Confidence 999999975444
No 261
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.6e-16 Score=131.02 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=73.1
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
....+|||+|||+++|+++|+++|++||.|+.+.++.+..+++++|||||+|++.++|++||+ ||++.|.++.|.|.+.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 356899999999999999999999999999987777777899999999999999999999999 9999999999887765
Q ss_pred E
Q 013047 206 A 206 (450)
Q Consensus 206 ~ 206 (450)
.
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 262
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.60 E-value=7.4e-16 Score=131.40 Aligned_cols=80 Identities=26% Similarity=0.252 Sum_probs=69.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCee--EEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVE--NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 104 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~--~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~ 104 (450)
..+.++|||+|||+++|+++|+++|++|+ |+ +|+|+.|+ +|+++|||||+|++.++|++||+. ++..+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~~---i~~~~v~i~~d~--~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l---- 108 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGLE---IVPNGITLPVDP--EGKITGEAFVQFASQELAEKALGK-HKERI---- 108 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTSC---EEEEEEECCCCS--SSSSCSEEEEEESSTTHHHHHHTT-TTCCB----
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCC---ceeeEEEEEECC--CCCCceEEEEEECCHHHHHHHHHH-CCCEE----
Confidence 34578999999999999999999999994 66 99999986 599999999999999999999985 55555
Q ss_pred CCceEEEeecCC
Q 013047 105 PERTVKVAFAEP 116 (450)
Q Consensus 105 ~gr~i~v~~a~~ 116 (450)
.++.|+|..+..
T Consensus 109 ~gR~I~V~~a~~ 120 (126)
T 2hgm_A 109 GHRYIEVFKSSQ 120 (126)
T ss_dssp TTBCCCCEEECH
T ss_pred CCEEEEEEECCH
Confidence 488999887743
No 263
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.60 E-value=3.3e-15 Score=131.29 Aligned_cols=80 Identities=24% Similarity=0.368 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
....++|||+|||+++|+++|+++|++||. |++|+|+.+ ++|||||+|.+.++|++||+.||+..+ .+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~--i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~----~g 137 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGP--LRSVWVARN------PPGFAFVEFEDPRDAADAVRELDGRTL----CG 137 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSC--EEEEEECSS------SCSEEEEEESSHHHHHHHHHHHSSSCS----SS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCC--EEEEEEeeC------CCcEEEEEECCHHHHHHHHHHcCCCEE----CC
Confidence 445789999999999999999999999999 999999986 469999999999999999999999887 58
Q ss_pred ceEEEeecCCCC
Q 013047 107 RTVKVAFAEPLR 118 (450)
Q Consensus 107 r~i~v~~a~~~~ 118 (450)
+.|+|.++.+++
T Consensus 138 ~~l~v~~a~~~~ 149 (150)
T 2i2y_A 138 CRVRVELSNGEK 149 (150)
T ss_dssp SCCEEEECCCCC
T ss_pred eEEEEEEcCCCC
Confidence 999999997754
No 264
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.60 E-value=1.3e-15 Score=125.67 Aligned_cols=77 Identities=18% Similarity=0.307 Sum_probs=70.0
Q ss_pred CccEEEEcCCCCCc------hhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCC-e
Q 013047 127 HVKTVFLDGVPPHW------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG-N 199 (450)
Q Consensus 127 ~~~~lfV~nLp~~~------te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~-~ 199 (450)
..++|||+|||+.+ |+++|+++|++||.|+.|.|+ ..+++++|||||+|++.++|++||+.|||..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46799999999999 889999999999999999988 46789999999999999999999999999999998 7
Q ss_pred eEEEEE
Q 013047 200 SKVKLR 205 (450)
Q Consensus 200 i~v~v~ 205 (450)
|+|.+.
T Consensus 92 l~V~~a 97 (105)
T 2nlw_A 92 FRVNLF 97 (105)
T ss_dssp EEEECS
T ss_pred EEEEEc
Confidence 666553
No 265
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.60 E-value=7.6e-16 Score=125.95 Aligned_cols=79 Identities=18% Similarity=0.431 Sum_probs=70.6
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM-STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~-~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~ 203 (450)
....++|||+||++++++++|+++|++|| |+.|.|+.+. .+++++|||||+|++.++|++|| +||+..|.|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 9999999998 68999999999999999999999 899999999987666
Q ss_pred EE
Q 013047 204 LR 205 (450)
Q Consensus 204 v~ 205 (450)
+.
T Consensus 94 ~a 95 (100)
T 2j76_E 94 VA 95 (100)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 266
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.60 E-value=1.6e-15 Score=126.18 Aligned_cols=91 Identities=18% Similarity=0.330 Sum_probs=75.6
Q ss_pred CCceEEEeecCCCCCCCccccCCccEEEEcCCCCC-chhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHH
Q 013047 105 PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPH-WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 183 (450)
Q Consensus 105 ~gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~-~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A 183 (450)
.+..|+|..+.......+ ....++|||+||+++ +++++|+++|++||.|+.|.| +++||||+|++.++|
T Consensus 6 ~g~~~~~~~s~~~~~~~~--~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A 75 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKNDP--KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHA 75 (110)
T ss_dssp CSCCCCCCCCCSCCSCCC--TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHH
T ss_pred CCcccccccCCCCCCCCC--CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHH
Confidence 356667766655443332 234579999999999 999999999999999999988 478999999999999
Q ss_pred HHHHHHhCCCeecCCeeEEEEE
Q 013047 184 VACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 184 ~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
++||++||+..|.++.|+|.+.
T Consensus 76 ~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 76 RAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp HHHHHHHTTCEETTEECCEEES
T ss_pred HHHHHHcCCCEECCeEEEEEEC
Confidence 9999999999999987666553
No 267
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.9e-15 Score=126.21 Aligned_cols=84 Identities=19% Similarity=0.304 Sum_probs=70.3
Q ss_pred CCCCCeEEE--cCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCc-ccC
Q 013047 27 SEDNDTLFV--GNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFG 103 (450)
Q Consensus 27 ~~~~~~lyV--~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~-~~g 103 (450)
+..+++||| +||++++|+++|+++|++||+ |++|.|+.+ ||||||+|++.++|++|++.||+.++ ...
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~--v~~v~i~~~-------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~l 92 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGL--VDALLMPPN-------KPYSFARYRTTEESKRAYVTLNGKEVVDDL 92 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSC--EEEEECCTT-------CSCEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCC--eEEEEEeCC-------CCEEEEEECCHHHHHHHHHHhCCCEEcccc
Confidence 445788999 779999999999999999999 999988643 59999999999999999999999976 322
Q ss_pred CCCceEEEeecCCCCC
Q 013047 104 HPERTVKVAFAEPLRE 119 (450)
Q Consensus 104 ~~gr~i~v~~a~~~~~ 119 (450)
..+++|.|.++.....
T Consensus 93 g~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 93 GQKITLYLNFVEKVQW 108 (114)
T ss_dssp SCEEECEEEEESCCCC
T ss_pred CCCcEEEEEecccCcc
Confidence 2478888888764443
No 268
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.60 E-value=1.9e-15 Score=126.91 Aligned_cols=68 Identities=21% Similarity=0.436 Sum_probs=62.3
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~ 201 (450)
..++|||+|||+++++++|+++|++||+|+.|.|+.+ +||||+|++.++|++||++||+++|+++.++
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 4679999999999999999999999999999999764 8999999999999999999999999998743
No 269
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.60 E-value=2.2e-15 Score=120.61 Aligned_cols=80 Identities=28% Similarity=0.398 Sum_probs=63.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
.....++|||+|||+++|+++|+++|++||. |++|+|+++ +||||||+|++.++|++ +++..+.+ .
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~--i~~v~i~~~------srGfaFV~F~~~~~A~~----~~~~~~~~--~ 72 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGE--VVDVFIPKP------FRAFAFVTFADDKVAQS----LCGEDLII--K 72 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSC--EEEEECCSS------CCSEEEEEESCHHHHHH----HTTCEEEE--T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCC--EEEEEEeeC------CCCEEEEEECCHHHHHH----HcCCCccc--C
Confidence 3445789999999999999999999999999 999999875 67999999999999984 45554433 4
Q ss_pred CceEEEeecCCCCC
Q 013047 106 ERTVKVAFAEPLRE 119 (450)
Q Consensus 106 gr~i~v~~a~~~~~ 119 (450)
++.|.|.+|.++..
T Consensus 73 g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 73 GISVHISNAEPKHN 86 (89)
T ss_dssp TEEEEEEECC----
T ss_pred CEEEEEEEcCCCCc
Confidence 89999999987654
No 270
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=5.3e-15 Score=121.06 Aligned_cols=78 Identities=23% Similarity=0.433 Sum_probs=69.5
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....++|||+|||+++++++|+++|++|. .|.++.+..++++++||||+|++.++|++||+.||+..|.++.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34668999999999999999999999773 678888888999999999999999999999999999999998766655
Q ss_pred E
Q 013047 205 R 205 (450)
Q Consensus 205 ~ 205 (450)
.
T Consensus 89 a 89 (102)
T 2fc8_A 89 A 89 (102)
T ss_dssp C
T ss_pred e
Confidence 3
No 271
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.60 E-value=1.6e-15 Score=126.11 Aligned_cols=78 Identities=15% Similarity=0.343 Sum_probs=69.7
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
...++|||+||++++++++|+++|++||.|+.|.|+.+..++.++|||||+|++.++|++||+.+ +..|.|+.|.|.+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 35689999999999999999999999999999999999989999999999999999999999876 5899998765554
No 272
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.7e-15 Score=121.86 Aligned_cols=82 Identities=18% Similarity=0.284 Sum_probs=69.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCC-CCcccCC
Q 013047 26 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK-PDVVFGH 104 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~-~~~~~g~ 104 (450)
.....++|||+|||.++|+++|+++|++||. |..+.++. ++|||||+|++.++|++||+.||+ ..+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~---- 70 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKL--PLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVEL---- 70 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTC--CCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEE----
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCC--ceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeE----
Confidence 3456789999999999999999999999997 54443333 358999999999999999999999 766
Q ss_pred CCceEEEeecCCCCCC
Q 013047 105 PERTVKVAFAEPLREP 120 (450)
Q Consensus 105 ~gr~i~v~~a~~~~~~ 120 (450)
.++.|+|+++.++...
T Consensus 71 ~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 71 HGKIMEVDYSVSKKLR 86 (93)
T ss_dssp TTEECEEEECCCCCCC
T ss_pred CCEEEEEEEccCcccc
Confidence 5899999999876554
No 273
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=2.1e-15 Score=133.86 Aligned_cols=103 Identities=20% Similarity=0.299 Sum_probs=87.8
Q ss_pred HHHHHhhCCCcccCCcccccCCCC------CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEE
Q 013047 5 FLIYILIFPLKQICGKRCGTAPSE------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 78 (450)
Q Consensus 5 ~~~~le~~~~~~~~~k~~~~~~~~------~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~a 78 (450)
...+|+. ...+.++.+.+.... ..++|||+|||.++|+++|+++|++||. |++|+|+.++. ++.++|||
T Consensus 58 a~~A~~~--~~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~~~i~~~~~-~g~~~g~a 132 (167)
T 2cjk_A 58 VDEVVKT--QHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGT--IIDAQLMLDKD-TGQSRGFG 132 (167)
T ss_dssp HHHHHHS--CCEETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSC--CSEEECCCSSS-SSTTSEEE
T ss_pred HHHHHhc--ccccCCeEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCcc--EEEEEEEEcCC-CCccceEE
Confidence 3455664 346778888776543 3679999999999999999999999999 99999999865 89999999
Q ss_pred EEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCC
Q 013047 79 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL 117 (450)
Q Consensus 79 FVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~ 117 (450)
||+|.+.++|++|++ +++..+ .++.|+|.+|.++
T Consensus 133 fV~f~~~~~a~~A~~-~~~~~~----~g~~i~V~~a~pk 166 (167)
T 2cjk_A 133 FVTYDSADAVDRVCQ-NKFIDF----KDRKIEIKRAEPR 166 (167)
T ss_dssp EEEESSHHHHHHHHH-CSEECS----SSSCEEEEECCCC
T ss_pred EEEECCHHHHHHHHh-CCCEEe----CCeEEEEeecCCC
Confidence 999999999999997 787766 5899999999875
No 274
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.4e-15 Score=123.78 Aligned_cols=78 Identities=18% Similarity=0.349 Sum_probs=69.8
Q ss_pred CccEEEEcCCCCCchhHHHH---HhhhccCceEEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCCeecCCee
Q 013047 127 HVKTVFLDGVPPHWKENQIR---DQIKGYGDVIRIVLARNMSTA---KRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 200 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~---~~F~~~G~v~~v~i~~d~~~g---~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i 200 (450)
..++|||+|||+++++++|+ ++|++||.|+.|.|+.+..++ +++|||||+|++.++|++||+.||+..|+++.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 46799999999999999999 999999999999999887644 456999999999999999999999999999865
Q ss_pred EEEE
Q 013047 201 KVKL 204 (450)
Q Consensus 201 ~v~v 204 (450)
+|.+
T Consensus 94 ~V~~ 97 (111)
T 2cpi_A 94 KASL 97 (111)
T ss_dssp EEES
T ss_pred EEEe
Confidence 4443
No 275
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.1e-15 Score=123.26 Aligned_cols=71 Identities=20% Similarity=0.412 Sum_probs=67.1
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecC
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g 197 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+.+. ++.+++||||+|++.++|++||+.||+..|.+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 356899999999999999999999999999999999997 89999999999999999999999999999954
No 276
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=1.5e-15 Score=127.49 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=64.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
....+|||+|||+++|+++|+++|++||+ |++|+|+.+ |||||+|++.++|++||+.||+.+| .++
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~--v~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l~g~~~----~gr 79 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGD--VCYADVYRD--------GTGVVEFVRKEDMTYAVRKLDNTKF----RSH 79 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSC--EEEEEECTT--------SEEEEEESSHHHHHHHHHHHTTCBC----CCT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEecC--------CEEEEEECCHHHHHHHHHHhCCCEE----CCc
Confidence 34689999999999999999999999999 999999864 8999999999999999999999987 466
Q ss_pred e-----EEEeecCCCC
Q 013047 108 T-----VKVAFAEPLR 118 (450)
Q Consensus 108 ~-----i~v~~a~~~~ 118 (450)
. |+|+.+.+..
T Consensus 80 ~~~~~~i~v~~~~~~~ 95 (115)
T 3beg_B 80 EGETAYIRVKVDGPRS 95 (115)
T ss_dssp TSCCCBCEEEECC---
T ss_pred EeeeEEEEeccCCCCC
Confidence 6 7777665543
No 277
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.2e-15 Score=120.88 Aligned_cols=74 Identities=18% Similarity=0.328 Sum_probs=65.9
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCCeecCCeeEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI--NNKEFSDGNSKVK 203 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l--~g~~~~g~~i~v~ 203 (450)
.+.++|||+|||+.+++++|+++|++||.|+.|.|+.+ ++||||+|++.++|++||+.| ++..|.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 46689999999999999999999999999999988764 799999999999999999977 4678999887666
Q ss_pred EE
Q 013047 204 LR 205 (450)
Q Consensus 204 v~ 205 (450)
+.
T Consensus 87 ~a 88 (101)
T 2cq1_A 87 YS 88 (101)
T ss_dssp EC
T ss_pred Ec
Confidence 64
No 278
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.59 E-value=1.7e-15 Score=127.83 Aligned_cols=77 Identities=9% Similarity=0.145 Sum_probs=71.3
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCc---eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGD---VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~---v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~ 203 (450)
..++|||+|||+++|+++|+++|++||. |+.|.|+.++. ++++|||||+|++.++|++||+ ||++.|.++.|+|.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 5679999999999999999999999999 89999999976 8999999999999999999998 99999999987766
Q ss_pred EE
Q 013047 204 LR 205 (450)
Q Consensus 204 v~ 205 (450)
+.
T Consensus 94 ~a 95 (118)
T 2db1_A 94 KS 95 (118)
T ss_dssp EE
T ss_pred EC
Confidence 54
No 279
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.4e-15 Score=119.87 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=69.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
+...++|||+|||+++|+++|+++|++||. |++| +.+.. ++. ||||+|.+.++|++||+ |++..+ .+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~--v~~v--~~~~~-~g~---~afV~f~~~~~a~~ai~-l~g~~~----~g 71 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGP--VASV--VMDKD-KGV---FAIVEMGDVGAREAVLS-QSQHSL----GG 71 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSC--EEEE--EECSS-SCC---EEEEEESSHHHHHHHHT-CSCCEE----TT
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCC--eEEE--EEcCC-CCc---EEEEEECCHHHHHHHHh-cCCeEE----CC
Confidence 445789999999999999999999999999 9988 44433 554 99999999999999999 999887 58
Q ss_pred ceEEEeecCCCCCC
Q 013047 107 RTVKVAFAEPLREP 120 (450)
Q Consensus 107 r~i~v~~a~~~~~~ 120 (450)
+.|+|.++.++...
T Consensus 72 ~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 72 HRLRVRPREQKEFQ 85 (94)
T ss_dssp EECCCBCSCCSCCC
T ss_pred EEEEEEECCcCCCC
Confidence 99999988765543
No 280
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=5.6e-15 Score=121.83 Aligned_cols=75 Identities=11% Similarity=0.263 Sum_probs=66.3
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC--eecCCeeEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK--EFSDGNSKV 202 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~--~~~g~~i~v 202 (450)
..+.++|||+|||+++++++|+++|++||.|+.|.|+.+ ++||||+|++.++|++||+.|++. .|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346789999999999999999999999999999988753 799999999999999999988765 488998777
Q ss_pred EEE
Q 013047 203 KLR 205 (450)
Q Consensus 203 ~v~ 205 (450)
.+.
T Consensus 86 ~~a 88 (104)
T 1wex_A 86 NYS 88 (104)
T ss_dssp EEC
T ss_pred EEc
Confidence 664
No 281
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7e-15 Score=119.76 Aligned_cols=76 Identities=29% Similarity=0.486 Sum_probs=66.5
Q ss_pred CccccCCccEEEEcCCCCCchhHHHHHhhhcc--CceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCC
Q 013047 121 DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 198 (450)
Q Consensus 121 ~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~--G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~ 198 (450)
........++|||+|||+++++++|+++|++| |.|+.|.+. ++||||+|++.++|++||+.||+..|.++
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 8 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp CCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred cccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 34445577899999999999999999999999 999998873 67999999999999999999999999998
Q ss_pred eeEEEE
Q 013047 199 NSKVKL 204 (450)
Q Consensus 199 ~i~v~v 204 (450)
.|+|.+
T Consensus 80 ~l~v~~ 85 (99)
T 2cpd_A 80 PIEVTL 85 (99)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 655544
No 282
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.59 E-value=1.9e-15 Score=120.48 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=68.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
...++|||+|||+++|+++|+++|++| . |++|+|. +++|||||+|.+.++|++|++.||+..+ .++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~--v~~~~i~-------~~~g~afV~f~~~~~a~~Ai~~l~g~~~----~g~ 68 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-D--LKYCYVD-------RNKRTAFVTLLNGEQAQNAIQMFHQYSF----RGK 68 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-C--CCCEEEE-------GGGTEEEECCSCHHHHHHHHHHHTTEEE----TTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-C--eEEEEEe-------CCCcEEEEEECCHHHHHHHHHHhCCCeE----CCc
Confidence 457899999999999999999999999 8 9999985 3679999999999999999999999887 589
Q ss_pred eEEEeecCCC
Q 013047 108 TVKVAFAEPL 117 (450)
Q Consensus 108 ~i~v~~a~~~ 117 (450)
.|+|+++...
T Consensus 69 ~l~V~~a~~~ 78 (88)
T 1wg1_A 69 DLIVQLQPTD 78 (88)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 9999998643
No 283
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.3e-15 Score=125.19 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=68.2
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
...+|||+|||+++|+++|+++|++| .|+.|.|+.++. ++++|||||+|++.++|++|| +||++.|.++.|.|..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 34799999999999999999999999 899999999975 899999999999999999999 7999999998755533
No 284
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.2e-15 Score=125.78 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
..++|||+|||.++|+++|+++|++||. |++|.|+. ++|||||+|.+.++|++||+.||+..+ .++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~--i~~v~i~~-------~~g~afV~f~~~~~A~~Ai~~l~g~~~----~g~~ 75 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGS--LGRVLLPE-------GGITAIVEFLEPLEARKAFRHLAYSKF----HHVP 75 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSC--EEEEECCS-------SSSCEEEEESCHHHHHHHHHHHTTCBS----SSSB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC--EEEEEEeC-------CCCEEEEEeCCHHHHHHHHHHhCCCEE----CCeE
Confidence 3679999999999999999999999999 99999875 358999999999999999999999987 5899
Q ss_pred EEEeecCCC
Q 013047 109 VKVAFAEPL 117 (450)
Q Consensus 109 i~v~~a~~~ 117 (450)
|+|.|+...
T Consensus 76 l~V~~a~~~ 84 (111)
T 1whx_A 76 LYLEWAPIG 84 (111)
T ss_dssp CEEEEEETT
T ss_pred EEEEECCCC
Confidence 999998643
No 285
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5.4e-15 Score=118.27 Aligned_cols=72 Identities=24% Similarity=0.462 Sum_probs=65.8
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+ ++||||+|++.++|++||+.||+..|.++.|+|.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 356899999999999999999999999999999996 679999999999999999999999999998666553
No 286
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.9e-15 Score=126.60 Aligned_cols=79 Identities=8% Similarity=0.106 Sum_probs=72.3
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCce-EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDV-IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v-~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
...++|||+|||+++|+++|+++|++||.| ..|.|+.+. +++++|||||+|++.++|++||+. |++.|.++.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 356899999999999999999999999999 889999997 899999999999999999999976 99999999877766
Q ss_pred EE
Q 013047 205 RA 206 (450)
Q Consensus 205 ~~ 206 (450)
..
T Consensus 91 a~ 92 (114)
T 2cpy_A 91 VT 92 (114)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 287
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.9e-15 Score=125.69 Aligned_cols=80 Identities=14% Similarity=0.321 Sum_probs=72.0
Q ss_pred ccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 013047 124 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203 (450)
Q Consensus 124 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~ 203 (450)
.....++|||+||+.++++++|+++|++||.|+.|.|+.+. +.++|||||+|++.++|++|++.||+..|+|+.|+|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34467899999999999999999999999999999999885 3489999999999999999999999999999887665
Q ss_pred EE
Q 013047 204 LR 205 (450)
Q Consensus 204 v~ 205 (450)
+.
T Consensus 103 ~a 104 (109)
T 2err_A 103 NA 104 (109)
T ss_dssp EC
T ss_pred EC
Confidence 53
No 288
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.59 E-value=2.6e-15 Score=118.59 Aligned_cols=72 Identities=13% Similarity=0.124 Sum_probs=66.5
Q ss_pred ccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 128 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 128 ~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
+..|+|+||++++||++|+++|.+||+|+++.++. ++|||||+|.+.++|++||+.||+..+.++.|.|.+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 46799999999999999999999999999999865 6999999999999999999999999999998766554
No 289
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.59 E-value=4.8e-15 Score=126.58 Aligned_cols=79 Identities=19% Similarity=0.231 Sum_probs=69.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeE-EEEEeCCHHHHHHHHHHhCCCCcccCCCCceE
Q 013047 31 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF-AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 109 (450)
Q Consensus 31 ~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~-aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i 109 (450)
-+|||+||++.+|+++|+++|++||. |++|+|+.+. +|| |||+|++.++|++|++.||+.+|.- ..+.|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~--V~~V~i~~~~------~gfqAFVef~~~~~A~~Ai~~LnG~~i~g--~~~~L 98 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGT--VLKIITFTKN------NQFQALLQYADPVSAQHAKLSLDGQNIYN--ACCTL 98 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSC--EEEEEEEEET------TEEEEEEEESCHHHHHHHHHHHTTCEEET--TEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCC--EEEEEEEcCC------CCcEEEEEECCHHHHHHHHHHcCCCeecC--CCcEE
Confidence 46779999999999999999999999 9999998642 488 9999999999999999999999841 13899
Q ss_pred EEeecCCCCC
Q 013047 110 KVAFAEPLRE 119 (450)
Q Consensus 110 ~v~~a~~~~~ 119 (450)
+|++++++.-
T Consensus 99 rI~~ak~~~l 108 (130)
T 3zzy_A 99 RIDFSKLTSL 108 (130)
T ss_dssp EEEECSCSSC
T ss_pred EEEecCCCce
Confidence 9999987654
No 290
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-15 Score=127.81 Aligned_cols=81 Identities=15% Similarity=0.242 Sum_probs=68.7
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
...++|||+|||+++|+++|+++|++||.|+.|.+..+..++++++||||+|++.++|++||+.||+..|.++.|.|.+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 35689999999999999999999999999844333333237889999999999999999999999999999998777664
Q ss_pred E
Q 013047 206 A 206 (450)
Q Consensus 206 ~ 206 (450)
.
T Consensus 103 ~ 103 (115)
T 2cpx_A 103 K 103 (115)
T ss_dssp C
T ss_pred c
Confidence 3
No 291
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.4e-15 Score=121.36 Aligned_cols=77 Identities=22% Similarity=0.386 Sum_probs=67.5
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....++|||+|||+++++++|+++|++||.| .|+.+ .++++++||||+|++.++|++||+.||+..|.++.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3456899999999999999999999999976 45555 6788999999999999999999999999999998765555
Q ss_pred E
Q 013047 205 R 205 (450)
Q Consensus 205 ~ 205 (450)
.
T Consensus 88 a 88 (101)
T 2fc9_A 88 Q 88 (101)
T ss_dssp C
T ss_pred c
Confidence 3
No 292
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.58 E-value=1.8e-15 Score=130.95 Aligned_cols=118 Identities=7% Similarity=0.038 Sum_probs=72.1
Q ss_pred eeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHHHHHhhhccCc
Q 013047 75 RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGD 154 (450)
Q Consensus 75 kG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~ 154 (450)
+|++|.+|...+.+-.....+... .+ +..- ... ...........++|||+|||+++|+++|+++|++||.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~---~g--g~~~--g~g---~~~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~ 70 (136)
T 2hgl_A 1 MGSSHHHHHHSSGLVPRGSHMASM---TG--GQQM--GRG---SMMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTI 70 (136)
T ss_dssp --------------------------------------------CCSCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCC
T ss_pred CccccccccchHHHHhhccCCCcc---cC--CCCC--CCC---CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCC
Confidence 367788888777766655433221 11 0000 000 0001111235679999999999999999999999999
Q ss_pred ---eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 155 ---VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 155 ---v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
|+.|.|+.++. ++++|||||+|++.++|++||+ ||++.|.++.|.|.+
T Consensus 71 v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 71 HDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFK 121 (136)
T ss_dssp SSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEE
T ss_pred cCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEE
Confidence 88999999977 9999999999999999999998 999999999766654
No 293
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.58 E-value=3e-15 Score=122.02 Aligned_cols=75 Identities=13% Similarity=0.261 Sum_probs=66.5
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe--ecCCeeEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE--FSDGNSKV 202 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~--~~g~~i~v 202 (450)
..++++|||+|||+++|+++|+++|++||.|++|.|+. .+|||||+|++.++|++||+.|++.. |.|+.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 34678999999999999999999999999999999874 47999999999999999999999886 67887666
Q ss_pred EEE
Q 013047 203 KLR 205 (450)
Q Consensus 203 ~v~ 205 (450)
.++
T Consensus 92 ~~S 94 (100)
T 3r27_A 92 NYS 94 (100)
T ss_dssp EEC
T ss_pred Eec
Confidence 553
No 294
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=126.72 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCC-CCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGV-EGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 105 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~-~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~ 105 (450)
..+..+|||+|||+++|+++|+++|++||. ++|++|+|+.++ .++++|||||+|++.++|++||+ +++..+ .
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~--~g~~~G~afV~F~~~~~a~~Al~-~~~~~~----~ 80 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR--DGKRRGDALIEMESEQDVQKALE-KHRMYM----G 80 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCT--TSTTCSEEEEEBSSHHHHHHHHT-TTTCCS----S
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECC--CCCEeeEEEEEECCHHHHHHHHH-hCccee----C
Confidence 456789999999999999999999999874 227899999986 49999999999999999999998 898776 5
Q ss_pred CceEEEeecCC
Q 013047 106 ERTVKVAFAEP 116 (450)
Q Consensus 106 gr~i~v~~a~~ 116 (450)
++.|+|.++.+
T Consensus 81 gr~i~V~~a~~ 91 (107)
T 2lmi_A 81 QRYVEVYEINN 91 (107)
T ss_dssp SSCCCCEECCH
T ss_pred CeEEEEEECCH
Confidence 78999988754
No 295
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=5.9e-15 Score=119.64 Aligned_cols=74 Identities=14% Similarity=0.326 Sum_probs=67.8
Q ss_pred CCccEEEEcCCCC-CchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 126 AHVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 126 ~~~~~lfV~nLp~-~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
...++|||+|||+ ++++++|+++|++||.|+.|.|. ++||||+|++.++|++||++||+..+.++.|+|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3568999999998 99999999999999999999983 78999999999999999999999999999988877
Q ss_pred EEe
Q 013047 205 RAR 207 (450)
Q Consensus 205 ~~~ 207 (450)
...
T Consensus 80 a~~ 82 (96)
T 2kvi_A 80 SSS 82 (96)
T ss_dssp EEC
T ss_pred cCc
Confidence 654
No 296
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.5e-15 Score=124.56 Aligned_cols=74 Identities=16% Similarity=0.299 Sum_probs=66.8
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--CeecCCeeEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN--KEFSDGNSKVK 203 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g--~~~~g~~i~v~ 203 (450)
.+.++|||+|||+++|+++|+++|++||.|+.|.|+.+ +|||||+|++.++|++||+.|++ ..|.|+.|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 45689999999999999999999999999999999875 79999999999999999999874 68999987776
Q ss_pred EE
Q 013047 204 LR 205 (450)
Q Consensus 204 v~ 205 (450)
+.
T Consensus 103 ~a 104 (119)
T 2ad9_A 103 FS 104 (119)
T ss_dssp EC
T ss_pred Ec
Confidence 64
No 297
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.9e-15 Score=124.71 Aligned_cols=79 Identities=14% Similarity=0.261 Sum_probs=67.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCC---CCeeeEEEEEeCCHHHHHHHHHHhCCCCcccC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE---GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 103 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~t---g~skG~aFVeF~~~edA~~Al~~l~~~~~~~g 103 (450)
...+++|||+|||+++|+++|+++|++||+ |+ +.++.+.. + |+++|||||+|++.++|++||++|+. +
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~--i~-~~~~~~~~-~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~--- 75 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGP--LV-VDWPHKAE-SKSYFPPKGYAFLLFQEESSVQALIDACLE--E--- 75 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCC--CC-EECTTSSS-SCCCSCTTSEEEECCSSHHHHHHHHHHSEE--E---
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCC--EE-EEEeecCC-CCCCCCcccEEEEEECCHHHHHHHHHhhhh--c---
Confidence 345789999999999999999999999999 98 88887764 4 79999999999999999999999843 2
Q ss_pred CCCceEEEeecC
Q 013047 104 HPERTVKVAFAE 115 (450)
Q Consensus 104 ~~gr~i~v~~a~ 115 (450)
.++.|.+..+.
T Consensus 76 -~G~~~~~~~~~ 86 (114)
T 2dnl_A 76 -DGKLYLCVSSP 86 (114)
T ss_dssp -TTEEEEEECCS
T ss_pred -CCcEEEeccCC
Confidence 36777766443
No 298
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.57 E-value=2.3e-15 Score=125.54 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=67.2
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccC-ceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G-~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
...+|||+|||+++++++|+++|++|| +|..|.|..+ +++|||||+|++.++|++||++||+.+|.|+.|+|++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 457999999999999999999999999 8999988543 47999999999999999999999999999997666553
No 299
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-14 Score=117.74 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
....++|||+|| ++|+++|+++|++||. |++|+|.. ++|||||+|.+.++|++||+.|++..+ .+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~--i~~v~i~~-------~~g~afV~f~~~~~a~~Ai~~l~g~~~----~g 76 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGN--IIDLSMDP-------PRNCAFVTYEKMESADQAVAELNGTQV----ES 76 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSC--EEEEEEET-------TTTEEEEEESSHHHHHHHHHHTTTEEE----TT
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCC--EEEEEecC-------CCCEEEEEECCHHHHHHHHHHhCCCeE----CC
Confidence 345789999996 8999999999999999 99999953 468999999999999999999999877 58
Q ss_pred ceEEEeecCCCCCC
Q 013047 107 RTVKVAFAEPLREP 120 (450)
Q Consensus 107 r~i~v~~a~~~~~~ 120 (450)
+.|+|.++.++...
T Consensus 77 ~~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 77 VQLKVNIARKQPML 90 (97)
T ss_dssp EEEEEECCSSCCCC
T ss_pred eEEEEEECCCCCCC
Confidence 99999999876654
No 300
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=6.9e-15 Score=122.60 Aligned_cols=76 Identities=22% Similarity=0.364 Sum_probs=67.3
Q ss_pred cCCccEEEEcCCCCC-chhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--CeecCCeeE
Q 013047 125 MAHVKTVFLDGVPPH-WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN--KEFSDGNSK 201 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~-~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g--~~~~g~~i~ 201 (450)
..+.++|||+|||++ +++++|+++|++||.|+.|.|+. +++||||+|++.++|++||+.|++ ..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345789999999998 99999999999999999999974 479999999999999999998864 569999988
Q ss_pred EEEEE
Q 013047 202 VKLRA 206 (450)
Q Consensus 202 v~v~~ 206 (450)
|.+..
T Consensus 96 V~~a~ 100 (112)
T 1x4f_A 96 VDLSE 100 (112)
T ss_dssp EEEEC
T ss_pred EEECc
Confidence 87754
No 301
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1e-14 Score=118.27 Aligned_cols=73 Identities=14% Similarity=0.342 Sum_probs=66.3
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeec--CCeeEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS--DGNSKVKL 204 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~--g~~i~v~v 204 (450)
..++|||+|||+++++++|+++|++||.|+.|.|+.+ ++||||+|++.++|++||++||+..|. ++.|+|.+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 5689999999999999999999999999999998753 789999999999999999999999999 88766655
Q ss_pred E
Q 013047 205 R 205 (450)
Q Consensus 205 ~ 205 (450)
.
T Consensus 90 a 90 (97)
T 1why_A 90 A 90 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 302
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8.4e-15 Score=121.54 Aligned_cols=74 Identities=24% Similarity=0.432 Sum_probs=67.3
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
...++|||+|||+.+++++|+++|++||.|+.|.|+.+ ++||||+|++.++|++||+.|++..|.++.|+|.+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 35679999999999999999999999999999999875 789999999999999999999999999987665553
No 303
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.56 E-value=1.3e-15 Score=117.42 Aligned_cols=74 Identities=26% Similarity=0.502 Sum_probs=69.3
Q ss_pred EEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 130 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 130 ~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
+|||+|||+++++++|+++|++||.|+.|.++.++.+++++|+|||+|++.++|++|++ +++..|.|+.+.|.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEE
Confidence 58999999999999999999999999999999999899999999999999999999997 589999999877654
No 304
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=116.76 Aligned_cols=71 Identities=27% Similarity=0.539 Sum_probs=64.3
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
...++|||+|||+++++++|+++|++||.|+.|.|+ ++||||+|++.++|++||+.||+..|.++.|+|.+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 356899999999999999999999999999999996 34999999999999999999999999998755544
No 305
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=1.8e-14 Score=122.41 Aligned_cols=77 Identities=25% Similarity=0.270 Sum_probs=66.6
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeE-EEEEeCCHHHHHHHHHHhCCCCcccCCCCceEE
Q 013047 32 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF-AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 110 (450)
Q Consensus 32 ~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~-aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~ 110 (450)
.|||+||++.+|+++|+++|++||. |++|+|+.. .|| |||+|++.++|++|+++||+.+|. + ..+.|+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~--V~~v~i~~~-------~Gf~aFVef~~~~~A~~A~~~LnG~~i~-g-~~~~l~ 95 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGK--VQRIVIFKR-------NGIQAMVEFESVLCAQKAKAALNGADIY-A-GCCTLK 95 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSC--EEEEEEEES-------SSEEEEEEESSHHHHHHHHHHHTTCCCB-T-TBSEEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCC--EEEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCEec-C-CCeEEE
Confidence 3679999999999999999999999 999999752 286 999999999999999999999883 1 126999
Q ss_pred EeecCCCCC
Q 013047 111 VAFAEPLRE 119 (450)
Q Consensus 111 v~~a~~~~~ 119 (450)
|.+|.++..
T Consensus 96 V~~Ak~~~l 104 (124)
T 2e5i_A 96 IEYARPTRL 104 (124)
T ss_dssp EECCSCSCC
T ss_pred EEEecCCcc
Confidence 999987653
No 306
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=5.9e-15 Score=120.58 Aligned_cols=72 Identities=17% Similarity=0.374 Sum_probs=66.7
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
++|||+|||+++|+++|+++|++||.|+.|.|+.+ +++||||+|++.++|++|+++||+..|.++.|+|.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 47999999999999999999999999999999876 7899999999999999999999999999998666553
No 307
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.55 E-value=5.6e-15 Score=132.38 Aligned_cols=100 Identities=17% Similarity=0.279 Sum_probs=85.6
Q ss_pred HHHHHhhCCCcccCCcccccCCCC--------CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeee
Q 013047 5 FLIYILIFPLKQICGKRCGTAPSE--------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 76 (450)
Q Consensus 5 ~~~~le~~~~~~~~~k~~~~~~~~--------~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG 76 (450)
...+|+ +++..+.++.+.+.+.. ..++|||+|||.++|+++|+++|++||. |..| . .++.++|
T Consensus 67 a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~--v~~~----~--~~~~~~g 137 (175)
T 1fje_B 67 LEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALE--IRLV----S--QDGKSKG 137 (175)
T ss_dssp HHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSE--EEEE----C--SSSSCCS
T ss_pred HHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCe--EEEe----c--CCCCCce
Confidence 456664 88888889988876654 3579999999999999999999999997 6555 2 2889999
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCC
Q 013047 77 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL 117 (450)
Q Consensus 77 ~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~ 117 (450)
||||+|.+.++|++|++.||+..+ .++.|+|+++.++
T Consensus 138 ~afV~f~~~~~A~~A~~~l~g~~~----~g~~i~v~~a~~k 174 (175)
T 1fje_B 138 IAYIEFKSEADAEKNLEEKQGAEI----DGRSVSLYYTGEK 174 (175)
T ss_dssp EEEEECSSHHHHHHHHHHHTEEEE----TTEEEEEEECSSC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEE----CCeEEEEEecCCC
Confidence 999999999999999999999877 5899999999765
No 308
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.55 E-value=7.1e-15 Score=123.84 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=68.9
Q ss_pred CeEEEcCC----CCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCC----HHH----HHHHHH--HhC
Q 013047 31 DTLFVGNI----CNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC----HVD----AMAAYK--RLQ 96 (450)
Q Consensus 31 ~~lyV~nL----p~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~----~ed----A~~Al~--~l~ 96 (450)
++|||+|| |+++++++|+++|++||+ |.+|.++.|+. ||.++|||||+|.+ .++ |.+|++ .|+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGe--V~~~~li~Dp~-Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGE--ISHFEAFNDPN-SALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSC--CSEEEEEECTT-TCCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCC--eEEEEEEecCC-CCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 68999999 999999999999999999 99999999987 99999999999996 333 788888 678
Q ss_pred CCCcccCCCCceEEEeecC
Q 013047 97 KPDVVFGHPERTVKVAFAE 115 (450)
Q Consensus 97 ~~~~~~g~~gr~i~v~~a~ 115 (450)
+..| .++.|+|....
T Consensus 80 g~~I----~Gr~irV~ln~ 94 (136)
T 2j8a_A 80 GCFI----MGFKFEVILNK 94 (136)
T ss_dssp CEEE----TTEEEEEEECC
T ss_pred CCee----cCcEEEEEECc
Confidence 8887 59999998653
No 309
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=3.2e-16 Score=131.67 Aligned_cols=80 Identities=26% Similarity=0.333 Sum_probs=73.7
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecC
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR--------IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~--------v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g 197 (450)
...++|||+|||+++++++|+++|++||.|+. |.|+.++.++++++||||+|++.++|++||+.||+..|.+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35679999999999999999999999999998 8999998899999999999999999999999999999999
Q ss_pred CeeEEEEE
Q 013047 198 GNSKVKLR 205 (450)
Q Consensus 198 ~~i~v~v~ 205 (450)
+.|.|.+.
T Consensus 85 ~~l~V~~a 92 (116)
T 2lcw_A 85 NPIKVSFA 92 (116)
Confidence 97666554
No 310
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.55 E-value=6.8e-15 Score=133.12 Aligned_cols=81 Identities=7% Similarity=0.171 Sum_probs=75.9
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
...++|||+||++.+++++|+++|++||.|+.|.|+.+. ++.+++||||+|++.++|++||++||+..|.++.|+|.+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999997 8899999999999999999999999999999999888876
Q ss_pred Ee
Q 013047 206 AR 207 (450)
Q Consensus 206 ~~ 207 (450)
..
T Consensus 165 ~~ 166 (177)
T 2f3j_A 165 AS 166 (177)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 311
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.55 E-value=3.1e-15 Score=123.86 Aligned_cols=78 Identities=12% Similarity=0.085 Sum_probs=71.4
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCc---eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGD---VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~---v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v 202 (450)
...++|||+|||+++|+++|+++|++||. |+.|.|+.++. ++++|||||+|++.++|++||+ ||+..|.++.|.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 35689999999999999999999999998 89999999977 9999999999999999999998 9999999998766
Q ss_pred EEE
Q 013047 203 KLR 205 (450)
Q Consensus 203 ~v~ 205 (450)
...
T Consensus 87 ~~a 89 (107)
T 2lmi_A 87 YEI 89 (107)
T ss_dssp EEC
T ss_pred EEC
Confidence 553
No 312
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=117.90 Aligned_cols=75 Identities=13% Similarity=0.329 Sum_probs=67.2
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
...++|||+|||+++++++|+++|++||.|. +.++.+ ++++||||+|++.++|++||+.||+..|.++.|+|.+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3568999999999999999999999999997 666654 57899999999999999999999999999998777654
No 313
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=9.6e-15 Score=124.82 Aligned_cols=78 Identities=18% Similarity=0.353 Sum_probs=69.1
Q ss_pred CCccEEEEcCCCCCchhHHHH----HhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeE
Q 013047 126 AHVKTVFLDGVPPHWKENQIR----DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~----~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~ 201 (450)
.+.++|||+||++.+++++|+ ++|++||.|+.|.+.. +++++|||||+|++.++|++||+.|||..|.|+.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 356899999999999999876 6999999999988753 578899999999999999999999999999999877
Q ss_pred EEEEE
Q 013047 202 VKLRA 206 (450)
Q Consensus 202 v~v~~ 206 (450)
|.+..
T Consensus 104 V~~a~ 108 (127)
T 2a3j_A 104 ITFSE 108 (127)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 76643
No 314
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=118.32 Aligned_cols=75 Identities=20% Similarity=0.466 Sum_probs=67.9
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....++|||+|||+++++++|+++|++||.|+.|.|+.+ ++||||+|++.++|++||+.||+..|.++.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345689999999999999999999999999999999753 79999999999999999999999999998876665
Q ss_pred E
Q 013047 205 R 205 (450)
Q Consensus 205 ~ 205 (450)
.
T Consensus 86 a 86 (99)
T 2cpj_A 86 A 86 (99)
T ss_dssp S
T ss_pred c
Confidence 4
No 315
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=9.5e-15 Score=117.86 Aligned_cols=71 Identities=14% Similarity=0.349 Sum_probs=63.1
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~ 203 (450)
..++|||+|||+++++++|+++|++||.|+.| +.+..+++ ||||+|++.++|++||+ ||+..|.|+.|.|.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 45799999999999999999999999999987 55555554 99999999999999999 99999999876554
No 316
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=1.9e-14 Score=118.86 Aligned_cols=83 Identities=17% Similarity=0.113 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCC-----CCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCccc
Q 013047 28 EDNDTLFVGNICN-----TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 102 (450)
Q Consensus 28 ~~~~~lyV~nLp~-----~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~ 102 (450)
..+++|+|+||.. +.++++|+++|++||. |++|+|++++..++.++|||||+|++.++|++|++.||+..+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~--V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~-- 81 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGK--VGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF-- 81 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSC--EEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE--
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCC--EEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE--
Confidence 4578999999963 3478999999999999 999999998653478999999999999999999999999988
Q ss_pred CCCCceEEEeecCC
Q 013047 103 GHPERTVKVAFAEP 116 (450)
Q Consensus 103 g~~gr~i~v~~a~~ 116 (450)
.++.|.|.++..
T Consensus 82 --~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 82 --GGRVVKACFYNL 93 (105)
T ss_dssp --TTEECEEEECCH
T ss_pred --CCcEEEEEEcCH
Confidence 589999999853
No 317
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=114.61 Aligned_cols=73 Identities=21% Similarity=0.402 Sum_probs=67.0
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCCeecCCeeEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI-NNKEFSDGNSKVKL 204 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l-~g~~~~g~~i~v~v 204 (450)
...++|||+|||.++++++|+++|++||.|+.|.|+.+ ++||||+|++.++|++|+++| ++..+.++.|+|.+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 45689999999999999999999999999999999863 799999999999999999999 99999998776665
No 318
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=9.1e-15 Score=116.41 Aligned_cols=80 Identities=25% Similarity=0.394 Sum_probs=67.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
+..+++|||+|||.++|+++|+++|++||. |++|+|+.+ ++|||||+|++.++|++| ++..+.+ .+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~------~~g~afV~f~~~~~a~~~----~~~~~~~--~g 67 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGD--VMDVFIPKP------FRAFAFVTFADDQIAQSL----CGEDLII--KG 67 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSC--CCEEECCSS------CCSCCEEECSCHHHHHHT----TTCEEEE--TT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCC--eeEEEEecC------CCCEEEEEECCHHHHHHH----hcCCcee--CC
Confidence 345789999999999999999999999999 999999865 579999999999999864 4444433 48
Q ss_pred ceEEEeecCCCCCC
Q 013047 107 RTVKVAFAEPLREP 120 (450)
Q Consensus 107 r~i~v~~a~~~~~~ 120 (450)
+.|+|.++.++...
T Consensus 68 ~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 68 ISVHISNAEPKHNS 81 (88)
T ss_dssp EEEEEECCCCCCCC
T ss_pred EEEEEEecCCCCCC
Confidence 99999999877654
No 319
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=4.6e-15 Score=126.05 Aligned_cols=77 Identities=10% Similarity=0.109 Sum_probs=68.4
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCce----EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDV----IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v----~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v 202 (450)
...+|||+|||+++|+++|+++|++||.| +.|.|+.+ .+++++|||||+|++.++|++||+. |++.|.++.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 45799999999999999999999999875 68999988 5899999999999999999999985 999999987555
Q ss_pred EEE
Q 013047 203 KLR 205 (450)
Q Consensus 203 ~v~ 205 (450)
...
T Consensus 100 ~~a 102 (123)
T 2dha_A 100 FRS 102 (123)
T ss_dssp EEE
T ss_pred EEC
Confidence 443
No 320
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.54 E-value=9.6e-15 Score=115.73 Aligned_cols=73 Identities=23% Similarity=0.300 Sum_probs=65.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhc----C-------CCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDY----G-------VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 95 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~----G-------~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l 95 (450)
+.+.++|||+|||+++|+++|+++|++| | . |.+|+++.+ +|||||+|.+.++|++|+ .|
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~--v~~~~~~~~-------kg~afV~f~~~~~a~~A~-~l 72 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNP--VLAVQINQD-------KNFAFLEFRSVDETTQAM-AF 72 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCS--EEEEEECSS-------SSEEEEEESSHHHHHHHG-GG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCc--ceEEEecCC-------CcEEEEEcCCHHHHHHHH-hc
Confidence 3457899999999999999999999999 8 7 999998864 599999999999999999 99
Q ss_pred CCCCcccCCCCceEEEee
Q 013047 96 QKPDVVFGHPERTVKVAF 113 (450)
Q Consensus 96 ~~~~~~~g~~gr~i~v~~ 113 (450)
|+..+ .++.|+|+.
T Consensus 73 ~g~~~----~g~~l~V~r 86 (87)
T 2hzc_A 73 DGIIF----QGQSLKIRR 86 (87)
T ss_dssp TTCEE----TTEECEEEC
T ss_pred CCCEE----CCeEEEEeC
Confidence 99887 589988864
No 321
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.54 E-value=8.2e-15 Score=119.97 Aligned_cols=78 Identities=24% Similarity=0.412 Sum_probs=71.9
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
..++|||+|||+++++++|+++|++||.|+.|.|+.+. +++++|||||+|++.++|++||+ ++..|+|+.+.|....
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45799999999999999999999999999999999997 89999999999999999999998 8999999887776655
Q ss_pred e
Q 013047 207 R 207 (450)
Q Consensus 207 ~ 207 (450)
.
T Consensus 85 ~ 85 (102)
T 2xs2_A 85 R 85 (102)
T ss_dssp E
T ss_pred c
Confidence 4
No 322
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=115.38 Aligned_cols=72 Identities=24% Similarity=0.416 Sum_probs=65.2
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
...++|||+|||+++|+++|+++|++||.|+.|.|+. +||||+|++.++|++||+.||+..|.++.|+|.+.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3568999999999999999999999999999999963 49999999999999999999999999987666553
No 323
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.7e-14 Score=113.11 Aligned_cols=75 Identities=27% Similarity=0.294 Sum_probs=65.5
Q ss_pred CCCe-EEEcCCCCCCcHHH----HHHHHhhcC-CCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCccc
Q 013047 29 DNDT-LFVGNICNTWTKEA----IKQKLKDYG-VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 102 (450)
Q Consensus 29 ~~~~-lyV~nLp~~~te~d----L~~~F~~~G-~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~ 102 (450)
++.| |||+|||+++++++ |+++|++|| + |.+| |+ |+|||+|.+.++|++|++.|++.++
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~--Vl~V--------tg---G~AfV~F~~~esA~~A~~~l~G~~l-- 71 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGK--VLSI--------TG---CSAILRFINQDSAERAQKRMENEDV-- 71 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCC--EEEC--------CT---TCEEEEESSHHHHHHHHHHHTTCCS--
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCe--eEEE--------ec---CEEEEEECCHHHHHHHHHHhcCCcc--
Confidence 3455 99999999999888 558999994 8 9888 33 9999999999999999999999998
Q ss_pred CCCCceEEEeecCCCCCC
Q 013047 103 GHPERTVKVAFAEPLREP 120 (450)
Q Consensus 103 g~~gr~i~v~~a~~~~~~ 120 (450)
.+++|+|++|..+.+.
T Consensus 72 --~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 72 --FGNRIIVSFTPKNREL 87 (96)
T ss_dssp --SSSCCEEESSCCSCCC
T ss_pred --CCceEEEEecCCCcce
Confidence 4999999999876654
No 324
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.53 E-value=2.6e-14 Score=116.18 Aligned_cols=73 Identities=14% Similarity=0.323 Sum_probs=66.5
Q ss_pred cCCccEEEEcCCCC-CchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 013047 125 MAHVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203 (450)
Q Consensus 125 ~~~~~~lfV~nLp~-~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~ 203 (450)
....++|||+||++ ++++++|+++|++||.|+.|.| ++|||||+|++.++|++||+.||+..|.|+.|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34568999999998 9999999999999999999988 37899999999999999999999999999887766
Q ss_pred EE
Q 013047 204 LR 205 (450)
Q Consensus 204 v~ 205 (450)
+.
T Consensus 91 ~a 92 (97)
T 2xnq_A 91 VS 92 (97)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 325
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=2.2e-14 Score=131.54 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=71.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceE
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 109 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i 109 (450)
.++|||+|||+++|+++|+++|++||. |++|+|+++. ++.++|||||+|++.++|++||+.++. .+ .++.|
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~--v~~v~i~~~~--~~~~kG~aFVeF~~~e~A~~A~~~~~~-~~----~Gr~l 179 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQ--VLNIQMRRTL--HKAFKGSIFVVFDSIESAKKFVETPGQ-KY----KETDL 179 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCC--EEEEEEEECT--TCCEEEEEEEEESSHHHHHHHHHCTTC-EE----TTEEC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCC--EEEEEEEECC--CCCcccEEEEEECCHHHHHHHHHhCCC-eE----CCEEE
Confidence 489999999999999999999999999 9999999986 699999999999999999999987654 44 58999
Q ss_pred EEeecCCC
Q 013047 110 KVAFAEPL 117 (450)
Q Consensus 110 ~v~~a~~~ 117 (450)
.|.++...
T Consensus 180 ~V~~~~~y 187 (193)
T 2voo_A 180 LILFKDDY 187 (193)
T ss_dssp EEEETTTC
T ss_pred EEEEhHHH
Confidence 99987643
No 326
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-15 Score=124.66 Aligned_cols=77 Identities=12% Similarity=0.247 Sum_probs=69.2
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
..++|||+|||+++++++|+++|++||.|.. .++.+..+++++|||||+|++.++|++||+ ||+..|.++.|+|.+.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 5679999999999999999999999999887 666676788999999999999999999998 9999999998666553
No 327
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.53 E-value=3.1e-14 Score=119.15 Aligned_cols=77 Identities=10% Similarity=0.220 Sum_probs=70.4
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
..++|||+|||+++++++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|++|++.||+..|.|+.|.|.+..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4679999999999999999999999999999999875 4568999999999999999999999999999988777653
No 328
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.53 E-value=8.6e-15 Score=123.33 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=69.6
Q ss_pred cEEEEcCC----CCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCC----HHH----HHHHHH--HhCCCe
Q 013047 129 KTVFLDGV----PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST----HEA----AVACIN--AINNKE 194 (450)
Q Consensus 129 ~~lfV~nL----p~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s----~e~----A~~Ai~--~l~g~~ 194 (450)
++|+|+|| ++.+++++|+++|++||+|.+|.++.|+.|+.++|||||+|.+ +++ |.+||+ +|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 322 788888 789999
Q ss_pred ecCCeeEEEEE
Q 013047 195 FSDGNSKVKLR 205 (450)
Q Consensus 195 ~~g~~i~v~v~ 205 (450)
|+|+.|+|.+.
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99998888764
No 329
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=2.9e-14 Score=118.87 Aligned_cols=75 Identities=11% Similarity=0.186 Sum_probs=68.8
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
..++|||+|||+.+++++|+++|++||.|+.|.|+. .++||||+|++.++|++||+.||+..|.++.|.|.+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999998864 57899999999999999999999999999998888765
Q ss_pred e
Q 013047 207 R 207 (450)
Q Consensus 207 ~ 207 (450)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 330
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.52 E-value=1e-14 Score=124.26 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=68.5
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceE--EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 203 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~--~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~ 203 (450)
....+|||+|||+++|+++|+++|++| .|+ .|.|+.++. ++++|||||+|++.++|++||+ +++..|.++.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 356789999999999999999999999 576 899999976 9999999999999999999997 57799999987665
Q ss_pred EE
Q 013047 204 LR 205 (450)
Q Consensus 204 v~ 205 (450)
..
T Consensus 117 ~a 118 (126)
T 2hgm_A 117 KS 118 (126)
T ss_dssp EE
T ss_pred EC
Confidence 54
No 331
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.52 E-value=1.9e-14 Score=133.24 Aligned_cols=80 Identities=13% Similarity=0.098 Sum_probs=66.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCe--eEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGV--ENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V--~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
+++|||+|||+++|+++|+++|++||. | ++|+|+.+. +..+|+|||+|++.++|++||+.||+.++.--....
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~--v~~~~v~~~~~~---~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~ 197 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGV--KRPTSVKVFSGK---SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPY 197 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTC--CCCSEEEECSCC---SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSS
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCC--cceEEEEEEcCC---CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCc
Confidence 457999999999999999999999998 8 899999873 556799999999999999999999999773221223
Q ss_pred eEEEeec
Q 013047 108 TVKVAFA 114 (450)
Q Consensus 108 ~i~v~~a 114 (450)
++.|++|
T Consensus 198 p~~vk~~ 204 (205)
T 3tyt_A 198 PYTLKLC 204 (205)
T ss_dssp CEECEEE
T ss_pred ceEEEec
Confidence 5666554
No 332
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.52 E-value=1.8e-14 Score=119.55 Aligned_cols=72 Identities=17% Similarity=0.395 Sum_probs=65.8
Q ss_pred cCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 125 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
....++|||+||++++++++|+++|++||.|+.|.|+ +|||||+|++.++|++|++.||+..|.|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4466899999999999999999999999999999997 68999999999999999999999999998765544
No 333
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.52 E-value=5.1e-14 Score=129.14 Aligned_cols=122 Identities=14% Similarity=0.253 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCCCCc--cccCCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEE
Q 013047 84 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP--EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLA 161 (450)
Q Consensus 84 ~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~~~~--~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~ 161 (450)
+.+.+..|++......+.+...+..|+-....+..+... ......++|||+|||+++|+++|+++|++||.|..|.|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 567777787765333343443344443331122211111 122345899999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEEe
Q 013047 162 RNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 207 (450)
Q Consensus 162 ~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~~ 207 (450)
.+. ++.++|||||+|++.++|++||+.+ +..|.|+.|.|.++..
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 985 4889999999999999999999755 4689999877766443
No 334
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.6e-14 Score=120.56 Aligned_cols=63 Identities=21% Similarity=0.333 Sum_probs=58.2
Q ss_pred CccEEEE--cCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 013047 127 HVKTVFL--DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195 (450)
Q Consensus 127 ~~~~lfV--~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~ 195 (450)
++++||| +||++++++++|+++|++||.|+.|.|+. .++||||+|++.++|++|+++|||++|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 5678999 77999999999999999999999988753 378999999999999999999999988
No 335
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.51 E-value=1.2e-14 Score=117.48 Aligned_cols=74 Identities=11% Similarity=0.227 Sum_probs=65.6
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
...++|||+|||+++++++|+++|++||.|..+ ..++.++|||||+|++.++|++||+.|++..|.|+.|.|.+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356899999999999999999999999987666 24678999999999999999999999999999998755544
No 336
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.5e-14 Score=118.24 Aligned_cols=72 Identities=25% Similarity=0.434 Sum_probs=65.5
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
..++|||+||+.++++++|+++|++||.|+.|.|+ ++++||||+|++.++|++||+.||+..|+++.|+|.+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 35799999999999999999999999999999997 3689999999999999999999999999998755543
No 337
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=114.68 Aligned_cols=75 Identities=16% Similarity=0.285 Sum_probs=66.7
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRI-VLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v-~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
..++|||+|||+++++++|+++|++||.|+.| .|+.++.+ +.|||+|++.++|++||+.||+..|.++.|+|.+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46799999999999999999999999999999 58777544 33999999999999999999999999998776654
No 338
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.9e-14 Score=115.75 Aligned_cols=72 Identities=15% Similarity=0.342 Sum_probs=63.3
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCc-eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-CeecCCeeEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGD-VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN-KEFSDGNSKVKL 204 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~-v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g-~~~~g~~i~v~v 204 (450)
..++|||+|||+++|+++|+++|++||. |..+.+. +++||||+|++.++|++||+.||+ ..|.++.|+|.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 5679999999999999999999999999 5555552 478999999999999999999999 999998766655
Q ss_pred E
Q 013047 205 R 205 (450)
Q Consensus 205 ~ 205 (450)
.
T Consensus 80 a 80 (93)
T 2cqh_A 80 S 80 (93)
T ss_dssp C
T ss_pred c
Confidence 4
No 339
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.50 E-value=1.4e-14 Score=117.28 Aligned_cols=76 Identities=14% Similarity=0.403 Sum_probs=68.6
Q ss_pred CccEEEEcCCCCCchhHHHH----HhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 013047 127 HVKTVFLDGVPPHWKENQIR----DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~----~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v 202 (450)
+.++|||+|||+++++++|+ ++|++||.|..|.|+. ++.+++||||+|++.++|++|++.||+..|.|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 56899999999999999999 9999999999998873 4667899999999999999999999999999987666
Q ss_pred EEE
Q 013047 203 KLR 205 (450)
Q Consensus 203 ~v~ 205 (450)
.+.
T Consensus 84 ~~a 86 (97)
T 1nu4_A 84 QYA 86 (97)
T ss_dssp EEC
T ss_pred EEc
Confidence 553
No 340
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.50 E-value=9.3e-14 Score=123.06 Aligned_cols=75 Identities=7% Similarity=0.190 Sum_probs=65.8
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecC--CeeEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD--GNSKVKL 204 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g--~~i~v~v 204 (450)
...+|||+||++.+|+++|+++|++||+|++|.|..+ .+++||||+|++.++|++|+++|||.+|.+ +.|+|++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 4568999999999999999999999999999998754 257899999999999999999999999976 6655554
Q ss_pred E
Q 013047 205 R 205 (450)
Q Consensus 205 ~ 205 (450)
.
T Consensus 121 A 121 (164)
T 1sjr_A 121 S 121 (164)
T ss_dssp C
T ss_pred e
Confidence 3
No 341
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.50 E-value=5.4e-14 Score=119.15 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 106 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~g 106 (450)
....++|||+|| ++|+++|+++|++||. |++|.|+. ++|||||+|++.++|++||+.|++..+ .+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~--I~~v~i~~-------~kg~aFV~f~~~~~A~~Ai~~lng~~~----~g 100 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGN--IIDLSMDP-------PRNCAFVTYEKMESADQAVAELNGTQV----ES 100 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCC--CSCEEEET-------TTTEEEEECSSHHHHHHHHHHHTTCBC----SS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCC--EEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCEE----CC
Confidence 446789999996 7999999999999999 99999973 469999999999999999999999987 58
Q ss_pred ceEEEeecCCCCCC
Q 013047 107 RTVKVAFAEPLREP 120 (450)
Q Consensus 107 r~i~v~~a~~~~~~ 120 (450)
+.|+|.++.++...
T Consensus 101 ~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 101 VQLKVNIARKQPML 114 (121)
T ss_dssp CBCEEEECCSSCC-
T ss_pred eEEEEEEeCCCCCC
Confidence 99999999876543
No 342
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.49 E-value=3.5e-14 Score=113.11 Aligned_cols=72 Identities=18% Similarity=0.329 Sum_probs=65.5
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
..++|||+|||+++++++|+++|++| .|+.|.|. +++|||||+|++.++|++|++.||+..+.++.++|.+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 45789999999999999999999999 99999884 47899999999999999999999999999998766654
No 343
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=2e-13 Score=115.93 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=60.1
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCCeecCCe
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDY-GFIDFSTHEAAVACINAINNKEFSDGN 199 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~-afV~F~s~e~A~~Ai~~l~g~~~~g~~ 199 (450)
....|||+||++.+++++|+++|++||.|++|.|+.. .|| |||+|++.++|++|+++|||.+|.++.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~ 91 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGC 91 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTB
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCC
Confidence 3456789999999999999999999999999998652 386 999999999999999999999999854
No 344
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.49 E-value=1.2e-13 Score=129.87 Aligned_cols=102 Identities=20% Similarity=0.287 Sum_probs=85.8
Q ss_pred hHHHHHhhCCCcccCCcccccCCCC-----------------------------------------CCCeEEEcCCCCCC
Q 013047 4 LFLIYILIFPLKQICGKRCGTAPSE-----------------------------------------DNDTLFVGNICNTW 42 (450)
Q Consensus 4 ~~~~~le~~~~~~~~~k~~~~~~~~-----------------------------------------~~~~lyV~nLp~~~ 42 (450)
-...+|+.+++..+.++.+.+.... .+++|||+|||.++
T Consensus 84 ~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~ 163 (229)
T 2adc_A 84 QAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV 163 (229)
T ss_dssp HHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTC
T ss_pred HHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccC
Confidence 3556777777777888777664322 25789999999999
Q ss_pred cHHHHHHHHhhcC-CCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC-CceEEEeecCCC
Q 013047 43 TKEAIKQKLKDYG-VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP-ERTVKVAFAEPL 117 (450)
Q Consensus 43 te~dL~~~F~~~G-~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~-gr~i~v~~a~~~ 117 (450)
|+++|+++|++|| . |++|+|+.+ .+|||||+|++.++|++||+.|++..+ . ++.|+|.|+.++
T Consensus 164 t~~~l~~~f~~~G~~--i~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~----~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 164 SEEDLKVLFSSNGGV--VKGFKFFQK------DRKMALIQMGSVEEAVQALIDLHNHDL----GENHHLRVSFSKST 228 (229)
T ss_dssp CHHHHHHHHHTTSCC--EEEEEECSS------STTCEEEEESSHHHHHHHHHHHTTCBS----SSSCBCEEEECSSC
T ss_pred CHHHHHHHHHHcCCC--eeEEEEEEC------CCcEEEEEECCHHHHHHHHHHHCCCcc----CCCCeEEEEEecCC
Confidence 9999999999999 8 999999764 258999999999999999999999887 4 799999999764
No 345
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.8e-13 Score=111.00 Aligned_cols=71 Identities=15% Similarity=0.379 Sum_probs=63.2
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
...++|||+|| ++++++|+++|++||.|+.|.|. ++++||||+|++.++|++||+.||+..|.++.|+|.+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 35679999996 89999999999999999999984 4689999999999999999999999999998655444
No 346
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.48 E-value=8.2e-14 Score=111.41 Aligned_cols=73 Identities=14% Similarity=0.358 Sum_probs=60.9
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
....+|||+|||+++|+++|+++|++||.|++|.|+.+ ++|||||+|++.++|+ +|++..+.++...|.|+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEE
Confidence 45689999999999999999999999999999999874 7999999999999987 36777777555555555
Q ss_pred Ee
Q 013047 206 AR 207 (450)
Q Consensus 206 ~~ 207 (450)
.+
T Consensus 80 ~a 81 (89)
T 3d2w_A 80 NA 81 (89)
T ss_dssp EC
T ss_pred Ec
Confidence 44
No 347
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.3e-14 Score=119.05 Aligned_cols=70 Identities=23% Similarity=0.430 Sum_probs=62.0
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCCeecCCe
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST---AKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 199 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~---g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~ 199 (450)
..++|||+|||+++++++|+++|++||.|+ +.++.+..+ ++++|||||+|++.++|++||++|+ .++|+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~ 79 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKL 79 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcE
Confidence 467999999999999999999999999999 888888776 7999999999999999999999983 245543
No 348
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.47 E-value=1e-13 Score=126.87 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=69.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcC-CCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCC-Cc
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYG-VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP-ER 107 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G-~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~-gr 107 (450)
+++|||+|||.++|+++|+++|++|| . |++|+|+.+. +|+|||+|.+.++|++|++.||+..+ . ++
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~--v~~v~i~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~----~~g~ 187 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGV--VKGFKFFQKD------RKMALIQMGSVEEAVQALIDLHNHDL----GENH 187 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSC--CCEEEESSTT------SSCEEEECSSHHHHHHHHHHHTSSCC----SSCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCC--ceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCcc----CCCC
Confidence 68899999999999999999999999 8 9999998742 58999999999999999999999887 4 79
Q ss_pred eEEEeecCCC
Q 013047 108 TVKVAFAEPL 117 (450)
Q Consensus 108 ~i~v~~a~~~ 117 (450)
.|+|.|+.++
T Consensus 188 ~l~v~~a~~~ 197 (198)
T 1qm9_A 188 HLRVSFSKST 197 (198)
T ss_dssp SCCEEEECCC
T ss_pred eEEEEeeccc
Confidence 9999998753
No 349
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.47 E-value=2.3e-13 Score=112.25 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=69.4
Q ss_pred CCccEEEEcCCCC-----CchhHHHHHhhhccCceEEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCCeecCCe
Q 013047 126 AHVKTVFLDGVPP-----HWKENQIRDQIKGYGDVIRIVLARNMST-AKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 199 (450)
Q Consensus 126 ~~~~~lfV~nLp~-----~~te~dL~~~F~~~G~v~~v~i~~d~~~-g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~ 199 (450)
.++++|+|.||.. +.++++|+++|++||.|+.|.|+.++.+ ++++|||||+|++.++|++|+++|||+.+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3567999999963 2478999999999999999999998654 688999999999999999999999999999998
Q ss_pred eEEEEE
Q 013047 200 SKVKLR 205 (450)
Q Consensus 200 i~v~v~ 205 (450)
|.|.+.
T Consensus 86 i~v~~a 91 (105)
T 2pe8_A 86 VKACFY 91 (105)
T ss_dssp CEEEEC
T ss_pred EEEEEc
Confidence 777664
No 350
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.47 E-value=2.9e-13 Score=115.54 Aligned_cols=68 Identities=7% Similarity=0.234 Sum_probs=61.8
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCCeecCCe
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDY-GFIDFSTHEAAVACINAINNKEFSDGN 199 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~-afV~F~s~e~A~~Ai~~l~g~~~~g~~ 199 (450)
+.-.|||+||++.+|+++|+++|++||.|.+|.|+.+ .++| |||+|++.++|++|+++|||.+|.+++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~ 95 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNAC 95 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCC
Confidence 4457889999999999999999999999999988764 3688 999999999999999999999999854
No 351
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.47 E-value=1.4e-14 Score=126.10 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=68.0
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEE--E---EecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCee
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIV--L---ARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 200 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~--i---~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i 200 (450)
...++|||+|||+++|+++|+++|++||.|..|. + +....+++++|||||+|.+.++|++||+.||+..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 3568999999999999999999999999987641 0 1112368899999999999999999999999999999987
Q ss_pred EEEEEE
Q 013047 201 KVKLRA 206 (450)
Q Consensus 201 ~v~v~~ 206 (450)
.|.+..
T Consensus 123 ~V~~a~ 128 (143)
T 3egn_A 123 VVQFAR 128 (143)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 776643
No 352
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.47 E-value=9.4e-14 Score=109.96 Aligned_cols=70 Identities=16% Similarity=0.447 Sum_probs=64.2
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhcc----C-------ceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGY----G-------DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~----G-------~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~ 195 (450)
..++|||+|||+++++++|+++|++| | .|..|.+..+ ++||||+|++.++|++|+ .||+..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 56899999999999999999999999 8 8999988653 799999999999999999 9999999
Q ss_pred cCCeeEEE
Q 013047 196 SDGNSKVK 203 (450)
Q Consensus 196 ~g~~i~v~ 203 (450)
.|+.|+|+
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 99876654
No 353
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.46 E-value=1.2e-13 Score=130.14 Aligned_cols=82 Identities=21% Similarity=0.333 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCC---------cHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCC
Q 013047 28 EDNDTLFVGNICNTW---------TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 98 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~---------te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~ 98 (450)
..+++|||+||+.++ |+++|+++|++||+ |++|+|+.+ ||||||+|.+.++|++|+++|++.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~--I~~v~v~~~-------kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGD--IDRIRYVES-------KNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSC--EEEEEEEGG-------GTEEEEEESSHHHHHHHHHHHTTC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCC--EEEEEEECC-------CCEEEEEeCCHHHHHHHHHHhCCC
Confidence 457899999999998 89999999999999 999999963 599999999999999999999999
Q ss_pred CcccCC--------CCceEEEeecCCCC
Q 013047 99 DVVFGH--------PERTVKVAFAEPLR 118 (450)
Q Consensus 99 ~~~~g~--------~gr~i~v~~a~~~~ 118 (450)
.+++.. .++.|.|.||....
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EEeccccccccccCCCCEEEEEEccCCC
Confidence 874311 37899999997544
No 354
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.44 E-value=2.9e-13 Score=130.81 Aligned_cols=76 Identities=25% Similarity=0.351 Sum_probs=68.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
.+++|||+|||.++|+++|+++|++||. |++|+|+.+. +|||||+|.+.++|++||+.||+..+. .++.
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~--i~~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~---~g~~ 274 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPG--FKEVRLVPGR------HDIAFVEFDNEVQAGAARDALQGFKIT---QNNA 274 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCC--eEEEEEecCC------CcEEEEEeCCHHHHHHHHHHcCCcEeC---CCCE
Confidence 4578999999999999999999999999 9999999763 489999999999999999999998772 2899
Q ss_pred EEEeecC
Q 013047 109 VKVAFAE 115 (450)
Q Consensus 109 i~v~~a~ 115 (450)
|+|.|++
T Consensus 275 l~v~~ak 281 (282)
T 3pgw_A 275 MKISFAK 281 (282)
T ss_pred EEEEEec
Confidence 9999985
No 355
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=5.3e-13 Score=111.28 Aligned_cols=83 Identities=14% Similarity=0.182 Sum_probs=70.1
Q ss_pred CCCCCCeEEEcCCCCCC-----------cHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013047 26 PSEDNDTLFVGNICNTW-----------TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 94 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~~-----------te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~ 94 (450)
....+++|+|.||.... ++++|+++|++||. |++|.| .+. .++|||||+|.+.++|++|++.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~--v~~v~i-~~~----~~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQ--IRKLLL-FDR----HPDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSC--CSEEEE-ETT----CTTCEEEEECSCHHHHHHHHHH
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCC--EeEEEE-ecC----CCCEEEEEEECCHHHHHHHHHH
Confidence 44568999999994433 36899999999999 999965 543 3789999999999999999999
Q ss_pred hCCCCcccCCCCceEEEeecCCCCC
Q 013047 95 LQKPDVVFGHPERTVKVAFAEPLRE 119 (450)
Q Consensus 95 l~~~~~~~g~~gr~i~v~~a~~~~~ 119 (450)
||+..+ .++.|+|.++.++..
T Consensus 84 lng~~~----~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 84 LDGRWF----GGRQITAQAWDGTTD 104 (112)
T ss_dssp STTCEE----TTEECEEEECCSCCC
T ss_pred cCCCEE----CCcEEEEEEeCCCCC
Confidence 999987 589999999987654
No 356
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.1e-13 Score=107.78 Aligned_cols=71 Identities=15% Similarity=0.294 Sum_probs=61.4
Q ss_pred CccE-EEEcCCCCCchhHH----HHHhhhcc-CceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCee
Q 013047 127 HVKT-VFLDGVPPHWKENQ----IRDQIKGY-GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 200 (450)
Q Consensus 127 ~~~~-lfV~nLp~~~te~d----L~~~F~~~-G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i 200 (450)
+..+ |||+|||+.+++++ |+++|++| |+|.+| ++ |+|||+|++.++|++|+++|+|.+|.++.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3455 89999999999888 55899999 599988 22 999999999999999999999999999997
Q ss_pred EEEEEEe
Q 013047 201 KVKLRAR 207 (450)
Q Consensus 201 ~v~v~~~ 207 (450)
+|.+...
T Consensus 77 ~v~~A~~ 83 (96)
T 2diu_A 77 IVSFTPK 83 (96)
T ss_dssp EEESSCC
T ss_pred EEEecCC
Confidence 7766543
No 357
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.3e-13 Score=107.30 Aligned_cols=71 Identities=17% Similarity=0.404 Sum_probs=58.7
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
..++|||+|||+++++++|+++|++||.|+.|.|+.+ +++||||+|++.++|++ +++..+....+.|.|..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHISN 74 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEEe
Confidence 4689999999999999999999999999999999765 78999999999999975 45556644444455543
No 358
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.41 E-value=4.1e-13 Score=113.73 Aligned_cols=72 Identities=15% Similarity=0.371 Sum_probs=65.1
Q ss_pred CCccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 013047 126 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 205 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~ 205 (450)
...++|||+|| ++++++|+++|++||.|+.|.|. .+++||||+|++.++|++||++||+..|.++.|+|.+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 35689999996 69999999999999999999885 46899999999999999999999999999998777664
No 359
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.39 E-value=6.5e-13 Score=125.15 Aligned_cols=78 Identities=24% Similarity=0.328 Sum_probs=68.6
Q ss_pred cCCccEEEEcCCCCCc---------hhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 013047 125 MAHVKTVFLDGVPPHW---------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 195 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~~---------te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~ 195 (450)
....++|||+||+..+ +|++|+++|++||.|+.|.|+. ++|||||+|++.++|+.|+++|+++.|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4467899999999998 8999999999999999999985 489999999999999999999999999
Q ss_pred ------------cCCeeEEEEEEee
Q 013047 196 ------------SDGNSKVKLRARL 208 (450)
Q Consensus 196 ------------~g~~i~v~v~~~~ 208 (450)
.++.|.|.+....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 7887777665443
No 360
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.37 E-value=1.8e-12 Score=109.22 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCC-----CCcHHHHHHHHhhcCCCCeeEEEEEeCCC---CCCCeeeEEEEEeCCHHHHHHHHHHhCCCCc
Q 013047 29 DNDTLFVGNICN-----TWTKEAIKQKLKDYGVEGVENINLVSDIQ---HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 100 (450)
Q Consensus 29 ~~~~lyV~nLp~-----~~te~dL~~~F~~~G~~~V~~i~l~~d~~---~tg~skG~aFVeF~~~edA~~Al~~l~~~~~ 100 (450)
.+++|+|.|+-. +-.++||++.|++||+ |++|+|+++.. .++.++|++||+|++.++|++|++.||+..+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~--V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGA--VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSC--EEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCC--EeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 578999999942 2347999999999999 99999999853 2467899999999999999999999999988
Q ss_pred ccCCCCceEEEeecC
Q 013047 101 VFGHPERTVKVAFAE 115 (450)
Q Consensus 101 ~~g~~gr~i~v~~a~ 115 (450)
.++.|.|.++.
T Consensus 97 ----~GR~i~v~~~~ 107 (118)
T 3ue2_A 97 ----AGRKVVAEVYD 107 (118)
T ss_dssp ----TTEECEEEEEC
T ss_pred ----CCcEEEEEEcC
Confidence 69999999874
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=3.3e-13 Score=111.15 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=63.3
Q ss_pred EcCCCCCCcHHHHHHHH------------hhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCccc
Q 013047 35 VGNICNTWTKEAIKQKL------------KDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 102 (450)
Q Consensus 35 V~nLp~~~te~dL~~~F------------~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~ 102 (450)
+.+|++++|+++|+++| ++||. |++|+|+++. +++++|||||+|++.++|++|++.||+..+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~--V~~v~i~~~~--~~~~~G~~fV~f~~~~~A~~A~~~lng~~~-- 93 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGE--VEEMNVCDNL--GDHLVGNVYVKFRREEDAEKAVIDLNNRWF-- 93 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--EEEEEECCSS--SSSSEEEEEEEESCHHHHHHHHHHHTTCEE--
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCc--eEEEEEEeCC--CCCccEEEEEEECCHHHHHHHHHHHCCCEE--
Confidence 56777778888777766 99999 9999999875 578999999999999999999999999987
Q ss_pred CCCCceEEEeec
Q 013047 103 GHPERTVKVAFA 114 (450)
Q Consensus 103 g~~gr~i~v~~a 114 (450)
.++.|+|.++
T Consensus 94 --~Gr~i~v~~s 103 (104)
T 1jmt_A 94 --NGQPIHAELS 103 (104)
T ss_dssp --TTEECCEEEC
T ss_pred --CCEEEEEEEc
Confidence 5899999876
No 362
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.36 E-value=1.2e-12 Score=107.98 Aligned_cols=82 Identities=22% Similarity=0.370 Sum_probs=69.7
Q ss_pred CCCeEEEcCC--CCCC--------cHHHHHHHHhhcCCCCeeEEEEEeCCCC-CCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 013047 29 DNDTLFVGNI--CNTW--------TKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAAYKRLQK 97 (450)
Q Consensus 29 ~~~~lyV~nL--p~~~--------te~dL~~~F~~~G~~~V~~i~l~~d~~~-tg~skG~aFVeF~~~edA~~Al~~l~~ 97 (450)
.++.|.|.|+ +.++ +++||+++|++||+ |++|+|+++... ++.++|+|||+|++.++|++|+++||+
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~--V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGL--VKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSC--EEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCC--EEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 5789999998 3333 45799999999999 999999987641 246899999999999999999999999
Q ss_pred CCcccCCCCceEEEeecCC
Q 013047 98 PDVVFGHPERTVKVAFAEP 116 (450)
Q Consensus 98 ~~~~~g~~gr~i~v~~a~~ 116 (450)
..+ .++.|+|.++..
T Consensus 82 ~~f----~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKF----ANRVVVTKYCDP 96 (105)
T ss_dssp CEE----TTEECEEEEECH
T ss_pred CEe----CCCEEEEEEeCH
Confidence 988 699999998753
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=6.6e-12 Score=102.47 Aligned_cols=77 Identities=23% Similarity=0.278 Sum_probs=63.2
Q ss_pred CCeEEEcCCC-------CCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCccc
Q 013047 30 NDTLFVGNIC-------NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 102 (450)
Q Consensus 30 ~~~lyV~nLp-------~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~ 102 (450)
..+|-|.-.. .++|+++|+++|++||. |++|.|+. +++|||||+|++.++|++||+.+++.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~--V~~v~i~~------~~rGfaFVeF~~~~~A~~Ai~~~~~~---- 77 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGE--VLNLVLSS------KKPGTAVVEFATVKAAELAVQNEVGL---- 77 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSC--EEEEEEES------SSSSEEEEEESCHHHHHHHHHTCCBC----
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCC--EEEEEEcc------CCCCEEEEEECCHHHHHHHHHhcCCC----
Confidence 4566665554 45899999999999999 99999983 46799999999999999999986552
Q ss_pred CCCCceEEEeecCCCCCC
Q 013047 103 GHPERTVKVAFAEPLREP 120 (450)
Q Consensus 103 g~~gr~i~v~~a~~~~~~ 120 (450)
.++.|+|+|+.++...
T Consensus 78 --~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 78 --VDNPLKISWLEGQPQD 93 (100)
T ss_dssp --SSSBCEEECSSCCCCC
T ss_pred --CCCeEEEEEccCCCCC
Confidence 3789999999766543
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.34 E-value=2.5e-12 Score=106.03 Aligned_cols=79 Identities=16% Similarity=0.271 Sum_probs=67.4
Q ss_pred CccEEEEcCC--CCCc--------hhHHHHHhhhccCceEEEEEEecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCCe
Q 013047 127 HVKTVFLDGV--PPHW--------KENQIRDQIKGYGDVIRIVLARNMST--AKRKDYGFIDFSTHEAAVACINAINNKE 194 (450)
Q Consensus 127 ~~~~lfV~nL--p~~~--------te~dL~~~F~~~G~v~~v~i~~d~~~--g~~rG~afV~F~s~e~A~~Ai~~l~g~~ 194 (450)
++++|.|.|+ +.++ .+++|+++|++||.|++|.|+.+..+ .+++|+|||+|++.++|++|+++|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678888887 2222 45799999999999999999988754 3679999999999999999999999999
Q ss_pred ecCCeeEEEEE
Q 013047 195 FSDGNSKVKLR 205 (450)
Q Consensus 195 ~~g~~i~v~v~ 205 (450)
+.|+.|+|.+.
T Consensus 84 f~GR~i~v~~~ 94 (105)
T 3v4m_A 84 FANRVVVTKYC 94 (105)
T ss_dssp ETTEECEEEEE
T ss_pred eCCCEEEEEEe
Confidence 99998877764
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.34 E-value=3.5e-12 Score=107.36 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=68.3
Q ss_pred CccEEEEcCCCC-----CchhHHHHHhhhccCceEEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCCeecC
Q 013047 127 HVKTVFLDGVPP-----HWKENQIRDQIKGYGDVIRIVLARNMS----TAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197 (450)
Q Consensus 127 ~~~~lfV~nLp~-----~~te~dL~~~F~~~G~v~~v~i~~d~~----~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g 197 (450)
++++|+|.|+-. +..++||+++|++||.|++|.|+.+.. +++++|++||+|++.++|++|+++|||+.+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567889999832 235799999999999999999998864 45678999999999999999999999999999
Q ss_pred CeeEEEEE
Q 013047 198 GNSKVKLR 205 (450)
Q Consensus 198 ~~i~v~v~ 205 (450)
+.|.|.+.
T Consensus 99 R~i~v~~~ 106 (118)
T 3ue2_A 99 RKVVAEVY 106 (118)
T ss_dssp EECEEEEE
T ss_pred cEEEEEEc
Confidence 98887764
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.33 E-value=2.2e-12 Score=127.87 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=66.5
Q ss_pred CCCCCeEEEcC--CCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCC
Q 013047 27 SEDNDTLFVGN--ICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 104 (450)
Q Consensus 27 ~~~~~~lyV~n--Lp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~ 104 (450)
+..+++|||+| |++++||++|+++|++||+ |++|.|.. +||||||+|++.++|++||++||+++++ ..
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~--V~~v~~~~-------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~-~~ 84 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGL--VDALLMPP-------NKPYSFARYRTTEESKRAYVTLNGKEVV-DD 84 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSC--EEEEECCT-------TCSEEEEEESSHHHHHHHHHHTTTCEEE-CT
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCC--eEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCccc-cc
Confidence 56788999999 5789999999999999999 99987753 4699999999999999999999999884 22
Q ss_pred CCc--eEEEeecC
Q 013047 105 PER--TVKVAFAE 115 (450)
Q Consensus 105 ~gr--~i~v~~a~ 115 (450)
.++ .|.|.+++
T Consensus 85 ~g~~~~ly~~~~~ 97 (345)
T 3tht_A 85 LGQKITLYLNFVE 97 (345)
T ss_dssp TSCEEECEEEECS
T ss_pred cCCceEEEEEEee
Confidence 344 56667764
No 367
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=8.1e-12 Score=104.05 Aligned_cols=76 Identities=14% Similarity=0.296 Sum_probs=64.1
Q ss_pred CCccEEEEcCCCCCc-----------hhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q 013047 126 AHVKTVFLDGVPPHW-----------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 194 (450)
Q Consensus 126 ~~~~~lfV~nLp~~~-----------te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~ 194 (450)
..+++|+|.||.... ++++|+++|++||.|+.|.| .+. .++|||||+|++.++|++||+.||++.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 357899999994433 36899999999999999965 543 379999999999999999999999999
Q ss_pred ecCCeeEEEEE
Q 013047 195 FSDGNSKVKLR 205 (450)
Q Consensus 195 ~~g~~i~v~v~ 205 (450)
|.++.|+|.+.
T Consensus 89 ~~gr~l~v~~a 99 (112)
T 2dit_A 89 FGGRQITAQAW 99 (112)
T ss_dssp ETTEECEEEEC
T ss_pred ECCcEEEEEEe
Confidence 99987666553
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.30 E-value=1.5e-12 Score=107.26 Aligned_cols=71 Identities=18% Similarity=0.356 Sum_probs=61.6
Q ss_pred EcCCCCCchhHHHHHhh------------hccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCee
Q 013047 133 LDGVPPHWKENQIRDQI------------KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 200 (450)
Q Consensus 133 V~nLp~~~te~dL~~~F------------~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i 200 (450)
+.+|++.+++++|+++| ++||.|+.|.|+.+.. ++++|||||+|++.++|++|+++|||+.+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56778888887777666 9999999999998754 6889999999999999999999999999999987
Q ss_pred EEEE
Q 013047 201 KVKL 204 (450)
Q Consensus 201 ~v~v 204 (450)
+|.+
T Consensus 99 ~v~~ 102 (104)
T 1jmt_A 99 HAEL 102 (104)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 7654
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.19 E-value=3.6e-11 Score=119.11 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=59.2
Q ss_pred cCCccEEEEcC--CCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeec
Q 013047 125 MAHVKTVFLDG--VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196 (450)
Q Consensus 125 ~~~~~~lfV~n--Lp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~ 196 (450)
..++++|||+| |++.+||++|+++|++||+|+.|.+.. .|+||||+|++.++|++||++|||+++.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 34678999999 578999999999999999999887743 5799999999999999999999999984
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.15 E-value=9.4e-11 Score=97.94 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=65.4
Q ss_pred CCCCeEEEcCCCC--C--------CcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 013047 28 EDNDTLFVGNICN--T--------WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 97 (450)
Q Consensus 28 ~~~~~lyV~nLp~--~--------~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~ 97 (450)
..++.|.|.|+=. + -.++||++.|++||. |++|+|.++. .+|+|||+|++.++|++|++.||+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~--V~~v~i~~~~-----~~G~~fV~f~~~e~A~~Ai~~lnG 77 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGG--VIHIYVDKNS-----AQGNVYVKCPSIAAAIAAVNALHG 77 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTC--CSEEEECTTC-----TTCCEEEECSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCC--EEEEEEecCC-----CcEEEEEEECCHHHHHHHHHHhCC
Confidence 4577899999832 2 236689999999999 9999997652 489999999999999999999999
Q ss_pred CCcccCCCCceEEEeecC
Q 013047 98 PDVVFGHPERTVKVAFAE 115 (450)
Q Consensus 98 ~~~~~g~~gr~i~v~~a~ 115 (450)
..+ .++.|.|.++.
T Consensus 78 ~~f----~GR~i~v~~~~ 91 (114)
T 3s6e_A 78 RWF----AGKMITAAYVP 91 (114)
T ss_dssp CEE----TTEECEEEEEC
T ss_pred CEE----CCEEEEEEEEc
Confidence 988 69999999874
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.11 E-value=1.5e-10 Score=96.64 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=63.0
Q ss_pred CccEEEEcCCCC--C--------chhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeec
Q 013047 127 HVKTVFLDGVPP--H--------WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 196 (450)
Q Consensus 127 ~~~~lfV~nLp~--~--------~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~ 196 (450)
++++|.|.|+=. + ..++||+++|++||.|+.|.|..+. .+|++||+|++.++|++|+++|||+++.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456777887722 1 2367899999999999999986652 5899999999999999999999999999
Q ss_pred CCeeEEEEE
Q 013047 197 DGNSKVKLR 205 (450)
Q Consensus 197 g~~i~v~v~ 205 (450)
|+.|.|.+.
T Consensus 82 GR~i~v~~~ 90 (114)
T 3s6e_A 82 GKMITAAYV 90 (114)
T ss_dssp TEECEEEEE
T ss_pred CEEEEEEEE
Confidence 999888775
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=4.7e-10 Score=91.42 Aligned_cols=61 Identities=20% Similarity=0.384 Sum_probs=52.0
Q ss_pred CCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 137 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 137 p~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
+..+++++|+++|++||.|+.|.|+ ++++|||||+|++.++|++||+.+++ +.++.|+|.+
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~ 86 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISW 86 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEEC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEE
Confidence 3578999999999999999999997 35899999999999999999987544 5677766544
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=6e-10 Score=93.52 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=64.2
Q ss_pred cCCccEEEEcCCCCC-chhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCC-HHHHHHHHHHhC--CCeecCCee
Q 013047 125 MAHVKTVFLDGVPPH-WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST-HEAAVACINAIN--NKEFSDGNS 200 (450)
Q Consensus 125 ~~~~~~lfV~nLp~~-~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s-~e~A~~Ai~~l~--g~~~~g~~i 200 (450)
..+...|+|+||++. +++++|+++|++||+|+.|.++.+.. .|||+|.+ .++|++|+++|| +..|.+..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 346789999999999 99999999999999999999988743 59999999 899999999995 677778766
Q ss_pred EEEE
Q 013047 201 KVKL 204 (450)
Q Consensus 201 ~v~v 204 (450)
++++
T Consensus 89 ~~ev 92 (121)
T 1owx_A 89 TWEV 92 (121)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6655
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=2.8e-09 Score=89.41 Aligned_cols=77 Identities=12% Similarity=0.145 Sum_probs=63.8
Q ss_pred CCCCCCeEEEcCCCCC-CcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCC-HHHHHHHHHHhCCCCcccC
Q 013047 26 PSEDNDTLFVGNICNT-WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC-HVDAMAAYKRLQKPDVVFG 103 (450)
Q Consensus 26 ~~~~~~~lyV~nLp~~-~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~-~edA~~Al~~l~~~~~~~g 103 (450)
.-.....|+|+||+.+ +++++|+++|++||. |+.|.++.+.. .|||+|.+ .++|++|+++|+.-.+.+.
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~--V~~Vd~~~g~~-------tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGE--IKWIDFVRGAK-------EGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCC--EEEEECCTTCS-------EEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCC--EEEEEEecCCC-------EEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 4456789999999999 999999999999999 99999998753 59999999 8999999999975544443
Q ss_pred CCCceEEEee
Q 013047 104 HPERTVKVAF 113 (450)
Q Consensus 104 ~~gr~i~v~~ 113 (450)
+..+++..
T Consensus 85 --g~~~~~ev 92 (121)
T 1owx_A 85 --NKEVTWEV 92 (121)
T ss_dssp --SSSEEEEE
T ss_pred --CcEEEEEE
Confidence 45555543
No 375
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.86 E-value=2.5e-08 Score=92.77 Aligned_cols=66 Identities=18% Similarity=0.292 Sum_probs=58.9
Q ss_pred CchhHHHHHhhhccCceEEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 139 HWKENQIRDQIKGYGDVIRIVLARNMS----TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 139 ~~te~dL~~~F~~~G~v~~v~i~~d~~----~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
+..+++|++.|++||.|+.|.|+.+.. +++++|++||+|++.++|++||+.|||+++.|+.|.+.+
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~ 209 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 209 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEE
Confidence 346789999999999999999986543 458999999999999999999999999999999987766
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=6.4e-09 Score=82.11 Aligned_cols=71 Identities=24% Similarity=0.395 Sum_probs=59.9
Q ss_pred CCeEEEcCCC----CCCcH----HHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcc
Q 013047 30 NDTLFVGNIC----NTWTK----EAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVV 101 (450)
Q Consensus 30 ~~~lyV~nLp----~~~te----~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~ 101 (450)
.-||+|.-++ .++.. .+|.+.|++||+ |..|+++.|. +||+|.+.++|.+||+ ||+.++
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~--Vi~vr~~~d~---------~fVtF~d~~sAlaAi~-mnG~~v- 73 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGE--VILIRFVEDK---------MWVTFLEGSSALNVLS-LNGKEL- 73 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCC--EEEEEECSSS---------EEEEESSHHHHHHGGG-GTTCEE-
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCC--eEEEEEecCC---------EEEEECChHHHHHHHh-cCCeEe-
Confidence 4578887765 24444 689999999999 9999999863 8999999999999998 999987
Q ss_pred cCCCCceEEEeecCC
Q 013047 102 FGHPERTVKVAFAEP 116 (450)
Q Consensus 102 ~g~~gr~i~v~~a~~ 116 (450)
.++.|+|+.+.+
T Consensus 74 ---~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 74 ---LNRTITIALKSP 85 (91)
T ss_dssp ---TTEEEEEEECCC
T ss_pred ---CCeEEEEEeCCC
Confidence 599999998864
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=5.6e-09 Score=82.44 Aligned_cols=55 Identities=20% Similarity=0.448 Sum_probs=50.1
Q ss_pred HHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEE
Q 013047 143 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 206 (450)
Q Consensus 143 ~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v~~ 206 (450)
.+|.+.|++||+|..++|+.++ +||+|++.++|.+||+ |||.++.|+.|+|.++.
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt 84 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRTITIALKS 84 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECC
T ss_pred HHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCC
Confidence 6789999999999999998873 8999999999999998 99999999998887764
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.74 E-value=5.1e-08 Score=90.70 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=65.9
Q ss_pred CCeEEEcCCC-----CCCcHHHHHHHHhhcCCCCeeEEEEEeCCC---CCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcc
Q 013047 30 NDTLFVGNIC-----NTWTKEAIKQKLKDYGVEGVENINLVSDIQ---HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVV 101 (450)
Q Consensus 30 ~~~lyV~nLp-----~~~te~dL~~~F~~~G~~~V~~i~l~~d~~---~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~ 101 (450)
.+.|.+.|+- .+-.+++|.+.|++||. |++|+|+++.. +++.++|++||+|.+.++|++|++.||+..+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~--v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~- 200 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGA--VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF- 200 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSC--EEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS-
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCC--eEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE-
Confidence 3455555553 23567899999999999 99999986532 3568999999999999999999999999988
Q ss_pred cCCCCceEEEeecC
Q 013047 102 FGHPERTVKVAFAE 115 (450)
Q Consensus 102 ~g~~gr~i~v~~a~ 115 (450)
.++.|.|.+..
T Consensus 201 ---~gr~i~~~~~~ 211 (222)
T 3dxb_A 201 ---AGRKVVAEVYD 211 (222)
T ss_dssp ---SSSBCEEEECC
T ss_pred ---CCeEEEEEEcC
Confidence 69999999874
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=1.5e-08 Score=80.44 Aligned_cols=70 Identities=11% Similarity=0.257 Sum_probs=57.6
Q ss_pred CccEEEEcCCCCC-----chh----HHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecC
Q 013047 127 HVKTVFLDGVPPH-----WKE----NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 197 (450)
Q Consensus 127 ~~~~lfV~nLp~~-----~te----~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g 197 (450)
+.-+|+|.-++.. +.. .+|.+.|++||+|..++|+.++ +||+|.+.++|.+||+ |||.++.+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 4467777777532 222 5689999999999999998873 9999999999999998 99999999
Q ss_pred CeeEEEEE
Q 013047 198 GNSKVKLR 205 (450)
Q Consensus 198 ~~i~v~v~ 205 (450)
+.++|.++
T Consensus 85 r~L~V~~k 92 (95)
T 1ufw_A 85 RAVKISGP 92 (95)
T ss_dssp EEEEEECC
T ss_pred eEEEEecc
Confidence 98777664
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=3.1e-08 Score=78.60 Aligned_cols=70 Identities=20% Similarity=0.218 Sum_probs=59.1
Q ss_pred CCCeEEEcCCCCC-----CcH----HHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCC
Q 013047 29 DNDTLFVGNICNT-----WTK----EAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 99 (450)
Q Consensus 29 ~~~~lyV~nLp~~-----~te----~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~ 99 (450)
..-||+|.-++.+ +.. .+|.+.|++||+ |+.|+++.|. +||+|.+.++|.+||+ |++.+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~--Vilvr~v~d~---------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGT--IVLVRINQGQ---------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSC--CSEEEEETTE---------EEEECSCSHHHHHHHH-GGGSE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCC--EEEEEEecCc---------EEEEEcChHHHHHHHh-cCCee
Confidence 4568999887632 333 579999999998 9999999873 9999999999999998 99999
Q ss_pred cccCCCCceEEEeec
Q 013047 100 VVFGHPERTVKVAFA 114 (450)
Q Consensus 100 ~~~g~~gr~i~v~~a 114 (450)
+ .++.|+|++-
T Consensus 82 v----~Gr~L~V~~k 92 (95)
T 1ufw_A 82 V----KGRAVKISGP 92 (95)
T ss_dssp E----TTEEEEEECC
T ss_pred e----CCeEEEEecc
Confidence 8 5999999854
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.34 E-value=1.6e-06 Score=70.07 Aligned_cols=72 Identities=18% Similarity=0.152 Sum_probs=65.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhc-----CCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCccc
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLKDY-----GVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 102 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~~~-----G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~ 102 (450)
+..++|=|=|||.++++..|+++++.+ |. ++.|.|+.|. +=|+|||++..+|-+|.-+|++.+|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~--i~KI~L~pDH-------~GAivef~d~~~AgKasLaL~G~ef-- 87 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKD--IRKILLVSDF-------NGAIIIFRDSKFAAKMLMILNGSQF-- 87 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTT--CSEEEEETTT-------TEEEEECSCHHHHHHHHHHHSSEEE--
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccc--eeEEEEecCC-------CceEEEEccchhhHHHHhhcCCeee--
Confidence 447899999999999999999999999 98 9999999986 4599999999999999999999998
Q ss_pred CCCCceEEEe
Q 013047 103 GHPERTVKVA 112 (450)
Q Consensus 103 g~~gr~i~v~ 112 (450)
.+++|+|.
T Consensus 88 --~gr~Lr~g 95 (117)
T 2l9w_A 88 --QGKVIRSG 95 (117)
T ss_dssp --TTEEEEEE
T ss_pred --cCeEEEec
Confidence 68888875
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.24 E-value=2.2e-06 Score=69.35 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=63.5
Q ss_pred ccEEEEcCCCCCchhHHHHHhhhcc-----CceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 013047 128 VKTVFLDGVPPHWKENQIRDQIKGY-----GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202 (450)
Q Consensus 128 ~~~lfV~nLp~~~te~dL~~~F~~~-----G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v 202 (450)
.++|-|-+||..+++..|+.+++++ |.|+.|.+..|. +-|+|+|++...|.+|.-+|+|.+|.++.|+|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 4678899999999999999999999 999999998873 45999999999999999999999999998776
Q ss_pred E
Q 013047 203 K 203 (450)
Q Consensus 203 ~ 203 (450)
.
T Consensus 95 g 95 (117)
T 2l9w_A 95 G 95 (117)
T ss_dssp E
T ss_pred c
Confidence 4
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=9.1e-06 Score=65.20 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhh---cCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccC
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKD---YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 103 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~---~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g 103 (450)
+....+|.|.|||.++.++.|+-+|++ .|-++|++|.... .-|+|+|.+.+.|+.+|++- ...+
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---------~~AvItF~d~~va~rVL~k~-~H~L--- 71 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---------CGGVLTFREPADAERVLAQA-DHEL--- 71 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---------TEEEEEESSHHHHHHHHTCS-CCBS---
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---------CcEEEEEcChHHHHHHhcCC-ccee---
Confidence 345679999999999999999999998 3556799998865 35999999999999999741 2223
Q ss_pred CCCceEEEeecCCCCCCCccccCCccEEEEcCCCCCch
Q 013047 104 HPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 141 (450)
Q Consensus 104 ~~gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~t 141 (450)
++..|.|....++ ...+|++.+|++.|+
T Consensus 72 -~~~~LsV~P~~~~---------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 72 -HGAQLSLRPAPPR---------APARLLLQGLPPGTS 99 (104)
T ss_dssp -SSSBCEEEECCCC---------CCCCCCCCSCCCCCC
T ss_pred -cCeEEEEEcCCCC---------CcceEeeecCCCCCC
Confidence 3677888654332 345788999998775
No 384
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.54 E-value=0.0002 Score=56.80 Aligned_cols=55 Identities=22% Similarity=0.327 Sum_probs=47.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 96 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~ 96 (450)
...++| ++|.++...||.++|+.||- ..|+++.|- .|||.|.+.+.|..|++.+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg---v~I~WidDT--------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN---IQISWIDDT--------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS---CCCEEEETT--------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC---EEEEEEcCC--------eEEEEecCHHHHHHHHHhcc
Confidence 345666 99999999999999999984 568888873 69999999999999998764
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.42 E-value=0.0013 Score=51.88 Aligned_cols=82 Identities=16% Similarity=0.138 Sum_probs=61.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCC-CeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceE
Q 013047 31 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEG-LSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 109 (450)
Q Consensus 31 ~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg-~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i 109 (450)
++|.|++||+++||+++.+.+..+.. +.-...+..+...+ ..-.-|+|.|.+.+++....+.+++..+... ++...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~--~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~-kg~~~ 78 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPE--HDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN-KGQEY 78 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCC--EEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT-TCCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCccc--ceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC-CCCEe
Confidence 58999999999999999999999876 76666666443222 1223599999999999999999999977544 34332
Q ss_pred --EEeecC
Q 013047 110 --KVAFAE 115 (450)
Q Consensus 110 --~v~~a~ 115 (450)
.|++|.
T Consensus 79 ~a~VE~AP 86 (91)
T 1uw4_A 79 PAIVEFAP 86 (91)
T ss_dssp ECEEEECS
T ss_pred eeEEEEcC
Confidence 355553
No 386
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.42 E-value=0.00014 Score=57.73 Aligned_cols=54 Identities=22% Similarity=0.302 Sum_probs=47.4
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 013047 32 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 97 (450)
Q Consensus 32 ~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~ 97 (450)
.++| ++|.++...||.++|+.|| -..|+++.|- .|||.|.+.+.|..|++.+..
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg---gv~I~WidDT--------sAlvvf~~~~~a~~al~~i~~ 61 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG---NIQISWIDDT--------SAFVSLSQPEQVKIAVNTSKY 61 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE---EEEEEEEETT--------EEEEEEEEECHHHHHHHHHTT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC---CEEEEEEcCC--------eEEEEecCHHHHHHHHHhccc
Confidence 4566 9999999999999999998 5678999873 699999999999999997753
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.21 E-value=0.00052 Score=55.22 Aligned_cols=72 Identities=11% Similarity=0.053 Sum_probs=59.3
Q ss_pred ccEEEEcCCCCCch-----hHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 013047 128 VKTVFLDGVPPHWK-----ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 202 (450)
Q Consensus 128 ~~~lfV~nLp~~~t-----e~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v 202 (450)
.++|+|.||+.++- .+.++++|.+|+++........ -.-..|.|.+.++|.+|-..|++..+.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 46899999987652 3678999999999888777664 224799999999999999999999999998777
Q ss_pred EEE
Q 013047 203 KLR 205 (450)
Q Consensus 203 ~v~ 205 (450)
-+.
T Consensus 79 YFg 81 (104)
T 1wey_A 79 YFA 81 (104)
T ss_dssp ECC
T ss_pred Eec
Confidence 653
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.14 E-value=0.0043 Score=48.93 Aligned_cols=70 Identities=14% Similarity=0.271 Sum_probs=58.5
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHHHhCCCeecCC
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAK--RKDYGFIDFSTHEAAVACINAINNKEFSDG 198 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~--~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~ 198 (450)
.+|.|.+||+..||+++.+.++...++.....+....+.+ .-.-|+|.|.+.+++....+.++|+.+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 4789999999999999999999998888777766543322 235699999999999999999999998653
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.12 E-value=0.0012 Score=53.07 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=62.8
Q ss_pred CCCeEEEcCCCCCC-----cHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccC
Q 013047 29 DNDTLFVGNICNTW-----TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 103 (450)
Q Consensus 29 ~~~~lyV~nLp~~~-----te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g 103 (450)
-.++|+|.||+.++ .++.|+++|.++++ +....+++.-+ =..|.|.+.++|.+|-..|++..+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~--~~tF~~lkSFR-------Rirv~F~~~~~A~~AR~~Lh~~~f--- 71 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDK--DTTFQYFKSFK-------RVRINFSNPLSAADARLRLHKTEF--- 71 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCS--SCEEEEETTTT-------EEEEECSSTTHHHHHHHTSTTSEE---
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCc--CcceeecCcce-------EEEEEeCChHHHHHHHHHhcccee---
Confidence 35799999998765 24788999999998 88877776421 378999999999999999999988
Q ss_pred CCCceEEEeecCCC
Q 013047 104 HPERTVKVAFAEPL 117 (450)
Q Consensus 104 ~~gr~i~v~~a~~~ 117 (450)
.++.|+|-++++.
T Consensus 72 -~g~~~r~YFgq~~ 84 (104)
T 1wey_A 72 -LGKEMKLYFAQTL 84 (104)
T ss_dssp -TTEECEEECCCCS
T ss_pred -cCceeEEEecCCC
Confidence 4899999998754
No 390
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.94 E-value=0.0041 Score=49.81 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=53.5
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhcc-----CceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeE
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGY-----GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 201 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~-----G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~ 201 (450)
..++|.|.|||..+.++.|+-+|++- |+|+.|.... +-|+|+|.+.+.|++.|+ -..+.|++..+.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 45789999999999999999999972 5788887743 468999999999999885 335677776554
Q ss_pred E
Q 013047 202 V 202 (450)
Q Consensus 202 v 202 (450)
|
T Consensus 78 V 78 (104)
T 2dhx_A 78 L 78 (104)
T ss_dssp E
T ss_pred E
Confidence 4
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.92 E-value=0.002 Score=51.03 Aligned_cols=56 Identities=16% Similarity=0.424 Sum_probs=46.0
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~ 191 (450)
..+.++| ++|.++...||.++|+.||.| .|..+.|. .|||.|.+++.|..|+..++
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3456777 999999999999999999844 36666652 69999999999999998664
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.45 E-value=0.0066 Score=50.12 Aligned_cols=72 Identities=11% Similarity=0.134 Sum_probs=51.3
Q ss_pred CCcccccCCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 013047 18 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 97 (450)
Q Consensus 18 ~~k~~~~~~~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~ 97 (450)
.+..+......+.+.|.|-++|.. ..+.|.++|++||+ |.++..... ..+..|.|.+..+|++||.+ |+
T Consensus 12 ~~~~l~~~~~~~~~wVtVFGFp~~-~~~~VL~~F~~~G~--Iv~~~~~~~-------~NWihI~Y~s~~~A~rAL~k-NG 80 (119)
T 1wwh_A 12 QGDSLTSEDHLDDTWVTVFGFPQA-SASYILLQFAQYGN--ILKHVMSNT-------GNWMHIRYQSKLQARKALSK-DG 80 (119)
T ss_dssp ---------CGGGGEEEEECCCGG-GHHHHHHHHHTTSC--EEEEEECSS-------SSEEEEEESSHHHHHHHHTT-TT
T ss_pred CCcccCCCCCCCCCEEEEECCCHH-HHHHHHHHHHhhCc--EEEeccCCC-------CCeEEEEeCCHHHHHHHHHh-CC
Confidence 344555555556788999999988 47789999999999 988876211 25899999999999999964 77
Q ss_pred CCc
Q 013047 98 PDV 100 (450)
Q Consensus 98 ~~~ 100 (450)
..+
T Consensus 81 ~ii 83 (119)
T 1wwh_A 81 RIF 83 (119)
T ss_dssp CEE
T ss_pred eEe
Confidence 644
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.39 E-value=0.0039 Score=49.52 Aligned_cols=55 Identities=18% Similarity=0.405 Sum_probs=45.9
Q ss_pred ccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 013047 128 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 191 (450)
Q Consensus 128 ~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~ 191 (450)
.+.++| ++|.++...||.++|+.|| -..|..+.|. .|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 355667 9999999999999999998 4446666653 69999999999999998775
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.19 E-value=0.0085 Score=47.58 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=54.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCC-eeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGL-SRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~-skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
+-+|.|+.||+++||+++.+.+..+=+ +.....+..+...+. .-.-|+|.|.+.+++....+.+++..+... ++.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~--~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~-kg~~ 85 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS-KGLE 85 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSS--EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT-TCCE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCc--cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC-CCCE
Confidence 568999999999999998887776533 322222222211111 112489999999999999999999877543 3433
Q ss_pred --EEEeec
Q 013047 109 --VKVAFA 114 (450)
Q Consensus 109 --i~v~~a 114 (450)
..|++|
T Consensus 86 ~~a~VE~A 93 (97)
T 2l08_A 86 YPAVVEFA 93 (97)
T ss_dssp EEEEEEEC
T ss_pred eeeEEEec
Confidence 234554
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.06 E-value=0.024 Score=46.73 Aligned_cols=65 Identities=17% Similarity=0.283 Sum_probs=52.6
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCe
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 199 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~ 199 (450)
...-|.|-+.+... ...|.+.|++||+|++.... ....+..|+|++..+|++||. .||..|.+..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~ 87 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESI 87 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCE
Confidence 45678899999885 56677889999999988762 235789999999999999995 6999887643
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.65 E-value=0.0066 Score=62.01 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=44.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013047 27 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 94 (450)
Q Consensus 27 ~~~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~ 94 (450)
++..++|+|. .+..+++++|.++|++||+ |.++.+..+. | -||.|||.+.+.|.++++.
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~--i~~~~~~~~~---g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQFGP--INNHFFYESF---G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGGSC--CCCEEEECSS---S---EEEEEECC---CCHHHHSS
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhcCC--cceEEEEccC---C---eEEEEEeCCHHHHHHHHhc
Confidence 3447899996 7999999999999999999 9999998763 2 5999999999998877643
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.57 E-value=0.024 Score=44.97 Aligned_cols=71 Identities=13% Similarity=0.188 Sum_probs=52.9
Q ss_pred ccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHHHhCCCeecCC
Q 013047 128 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAK--RKDYGFIDFSTHEAAVACINAINNKEFSDG 198 (450)
Q Consensus 128 ~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~--~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~ 198 (450)
+-+|.|..||+.+||+++.+.++..=++.+...+....+.+ .-.-|+|.|.+.+++....+.++|+.+.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 45799999999999999998888765554443333222211 124589999999999999999999998653
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.16 E-value=0.025 Score=57.72 Aligned_cols=56 Identities=18% Similarity=0.312 Sum_probs=42.1
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 188 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~ 188 (450)
..++|+|. ++..+++++|.+.|++||.|..+....+ ..-||+|||.+.+++++++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-----~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-----FGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-----SSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-----CCeEEEEEeCCHHHHHHHHh
Confidence 45789998 7889999999999999999999877654 34799999999999887754
No 399
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.04 E-value=0.27 Score=50.90 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=47.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCC
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 98 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~ 98 (450)
...++|+ +|..|...+|.++|+.||. .+|.++.+ ..|||.|.+.+.|+.+++++...
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~---v~V~widd--------t~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN---IQISWIDD--------TSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC---CEEEECSS--------SEEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC---EEEEEEcC--------CeEEEEECCHHHHHHHHHHHHhC
Confidence 4466665 9999999999999999994 57777765 36999999999999999988643
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.05 E-value=0.3 Score=40.83 Aligned_cols=72 Identities=15% Similarity=0.257 Sum_probs=48.5
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEE-EEEEec--------CCCC-----CcceEEEEEeCCHHHHHHHHHHhCCCe
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIR-IVLARN--------MSTA-----KRKDYGFIDFSTHEAAVACINAINNKE 194 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~-v~i~~d--------~~~g-----~~rG~afV~F~s~e~A~~Ai~~l~g~~ 194 (450)
.-|.|-+.|.+.+. .|.+.|++||.|.+ +.+... .... ....+..|+|++..+|.+||. .||+.
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 45777788766554 56668999999865 221110 0000 124688999999999999995 79999
Q ss_pred ecCCeeEE
Q 013047 195 FSDGNSKV 202 (450)
Q Consensus 195 ~~g~~i~v 202 (450)
|.|.-|-|
T Consensus 86 i~G~mIGV 93 (132)
T 3p3d_A 86 FNGVLLGV 93 (132)
T ss_dssp ETTEECEE
T ss_pred eCcEEEEE
Confidence 98854444
No 401
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=88.52 E-value=1.1 Score=37.28 Aligned_cols=68 Identities=7% Similarity=0.036 Sum_probs=44.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEE-EEeCC-----------CCCC-CeeeEEEEEeCCHHHHHHHHHHh
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENIN-LVSDI-----------QHEG-LSRGFAFVMFSCHVDAMAAYKRL 95 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~-l~~d~-----------~~tg-~skG~aFVeF~~~edA~~Al~~l 95 (450)
....|.|=+.|.+ ....|.++|++||. |.+-. +.... .-.. ....+..|+|.+..+|++||. .
T Consensus 6 ~e~~VtVFGFp~~-~~~~VI~~Fs~~G~--IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~ 81 (132)
T 3p3d_A 6 GELAILVFGYPET-MANQVIAYFQEFGT--ILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-E 81 (132)
T ss_dssp --CEEEEECCCGG-GHHHHHHHHGGGSC--BCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-T
T ss_pred CceEEEEEecCHH-HHHHHHHHHHhhce--EeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-h
Confidence 3557888889765 55678889999998 76621 11100 0000 124688999999999999995 4
Q ss_pred CCCCc
Q 013047 96 QKPDV 100 (450)
Q Consensus 96 ~~~~~ 100 (450)
|+..|
T Consensus 82 NG~ii 86 (132)
T 3p3d_A 82 NGAVF 86 (132)
T ss_dssp TTCEE
T ss_pred CCeEe
Confidence 77654
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=81.70 E-value=2.7 Score=43.38 Aligned_cols=57 Identities=16% Similarity=0.412 Sum_probs=45.0
Q ss_pred ccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 013047 128 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 193 (450)
Q Consensus 128 ~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~ 193 (450)
...++|+ ++..+...+|.++|+.||.| .|..+.+ ..|||.|.+.+.|..++..++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHhC
Confidence 4566776 88888899999999999954 4554443 36999999999999999988643
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=68.68 E-value=37 Score=26.01 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=49.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCce
Q 013047 29 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 108 (450)
Q Consensus 29 ~~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~ 108 (450)
.+.-|-|-|||..+-+.++.-.....|- ---|..+- |-|.|.|.+.++...|+.+|- ++....
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgy--efycdyid---------gqamirfqnsdeqrlaiqkll------nhnnnk 73 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGY--EFYCDYID---------GQAMIRFQNSDEQRLAIQKLL------NHNNNK 73 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCC--CEEEEECS---------SCEEEEESSHHHHHHHHHHHE------ETTTTE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCe--eEeeeeec---------CeeEEEecCChHHHHHHHHHH------hcCCCE
Confidence 3567888899999999999988888886 33444442 569999999999999998652 223555
Q ss_pred EEEe
Q 013047 109 VKVA 112 (450)
Q Consensus 109 i~v~ 112 (450)
+.++
T Consensus 74 lqie 77 (129)
T 4eyt_A 74 LQIE 77 (129)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 404
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=66.37 E-value=15 Score=28.08 Aligned_cols=56 Identities=23% Similarity=0.255 Sum_probs=40.9
Q ss_pred EEcCCCCCCcHHHHHHHHhh-cCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013047 34 FVGNICNTWTKEAIKQKLKD-YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 94 (450)
Q Consensus 34 yV~nLp~~~te~dL~~~F~~-~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~ 94 (450)
|+=.+...+|+.+|++.+++ |+. .|.+|..+.-+ .+.- =|+|++....+|.++..+
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~V-kV~~VNTl~~~--~~~K--KA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNV-KVEKVNTLITP--RGEK--KAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTC-CEEEEEEEECT--TSCE--EEEEEECTTSCHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCC-CceEEEEeEcC--CCce--EEEEEcCCCCcHHHHHHh
Confidence 33346788999999999998 564 68888777654 2222 399999988888876554
No 405
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=64.22 E-value=22 Score=27.31 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=34.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHh----hcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 013047 28 EDNDTLFVGNICNTWTKEAIKQKLK----DYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 96 (450)
Q Consensus 28 ~~~~~lyV~nLp~~~te~dL~~~F~----~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~ 96 (450)
.+....||=.. ..=.|+.+++.++ ..+. .|.+|.+.. .+.||.||++...+++..+|+...
T Consensus 7 v~d~~WYvv~~-~sG~E~~V~~~L~~~~~~~~l-~i~~v~vP~------~fPGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 7 VGAHMIFAVRT-MVGQEKNIAGLMASRAEKEQL-DVYSILASE------SLKGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp --CCCEEEEEE-CTTCHHHHHHHHHHHHHHTTC-CEEEEEECT------TSTTEEEEEESSHHHHHHHHTTCT
T ss_pred CCCCeEEEEEE-ECChHHHHHHHHHHHHHhcCC-cEEEEEEec------ccCCEEEEEEecchhHHHHHHCCC
Confidence 33444555332 1223444444443 3453 255555442 378999999999988888876443
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=60.58 E-value=18 Score=26.38 Aligned_cols=69 Identities=12% Similarity=0.127 Sum_probs=42.0
Q ss_pred eEEEcCC-CCCCcHHHHHHHHhhcCC---CCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCc
Q 013047 32 TLFVGNI-CNTWTKEAIKQKLKDYGV---EGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 107 (450)
Q Consensus 32 ~lyV~nL-p~~~te~dL~~~F~~~G~---~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr 107 (450)
+|+|..= -..++..+|..++..-+- ..|-.|.|.. .|.||+-... .|+.++++|+...+ .++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d---------~~s~v~v~~~-~~~~~~~~l~~~~i----~g~ 67 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD---------NASYVEILNG-KGPHVLKVMKNTTV----KGK 67 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS---------SCEEEEECTT-CHHHHHHHHTTCCC-------
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC---------CcEEEEECHH-HHHHHHHHhccccC----cCc
Confidence 5666221 235777888888876432 3456677754 3789998755 57788888988776 477
Q ss_pred eEEEeec
Q 013047 108 TVKVAFA 114 (450)
Q Consensus 108 ~i~v~~a 114 (450)
.++|..+
T Consensus 68 ~~~v~~~ 74 (76)
T 2g0c_A 68 QLKVNKA 74 (76)
T ss_dssp CCCEEEC
T ss_pred eEEEEEC
Confidence 7777654
No 407
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=55.21 E-value=20 Score=28.14 Aligned_cols=65 Identities=12% Similarity=0.126 Sum_probs=47.8
Q ss_pred CCCCCCcHHHHHHHHhh-cCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecC
Q 013047 37 NICNTWTKEAIKQKLKD-YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 115 (450)
Q Consensus 37 nLp~~~te~dL~~~F~~-~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~ 115 (450)
.++..++-+||...... ||. -.++..+.+ ...|-..+.+|..+||+.|+.... .+.|+|-...
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq--~ldL~y~n~---------EllIpl~sQeDLDkaIellDrss~-----~kSLrIlL~~ 86 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQ--SMDLHYTNN---------ELVIPLTTQDDLDKAVELLDRSIH-----MKSLKILLVI 86 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSS--CEEEEECSS---------SSCEECCSHHHHHHHHHHHHHCSS-----CCSEEEEEEE
T ss_pred eccCCccHHHHHHHHHHHhCC--eeeEEEecc---------eEEEeccCHHHHHHHHHHHccCCc-----ccceEEEEec
Confidence 56778888888877765 787 666666632 367999999999999999887754 4566665544
Q ss_pred CC
Q 013047 116 PL 117 (450)
Q Consensus 116 ~~ 117 (450)
++
T Consensus 87 ~~ 88 (103)
T 2cu1_A 87 NG 88 (103)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 408
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=50.48 E-value=30 Score=29.01 Aligned_cols=53 Identities=26% Similarity=0.365 Sum_probs=39.2
Q ss_pred CCCCCCcHHHHHHHHhh-cCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013047 37 NICNTWTKEAIKQKLKD-YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 94 (450)
Q Consensus 37 nLp~~~te~dL~~~F~~-~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~ 94 (450)
-+...+|+.+|++.+++ |+. .|..|..+.-+. +.- =|+|.+....||.++...
T Consensus 85 ~Vd~~AnK~qIK~AVEklf~V-kV~kVNTl~~~~--g~K--KAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 85 QVSMKANKYQIKKAVKELYEV-DVLKVNTLVRPN--GTK--KAYVRLTADYDALDIANR 138 (142)
T ss_dssp EECTTCCHHHHHHHHHHHHSC-CEEEEEEEECTT--SCE--EEEEEECTTCCHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHhCC-ceeEEEeeEcCC--Cce--EEEEEeCCCCcHHHHHHh
Confidence 45778999999999988 565 688887776542 222 399999988888776544
No 409
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=49.52 E-value=31 Score=29.23 Aligned_cols=53 Identities=25% Similarity=0.412 Sum_probs=39.2
Q ss_pred CCCCCCcHHHHHHHHhh-cCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013047 37 NICNTWTKEAIKQKLKD-YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 94 (450)
Q Consensus 37 nLp~~~te~dL~~~F~~-~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~ 94 (450)
-+...+|+.+|++.+++ |+. .|..|..+.-+ .+.- =|||.+....||.++...
T Consensus 93 ~Vd~kAnK~qIK~AVEklf~V-kV~kVNTl~~p--~g~K--KAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 93 YVHNRSTKPQIKSAFEKLYNV-KVRSVNTLNTI--TGNK--KAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EECTTCCHHHHHHHHHHHHCC-CEEEEEEEECT--TSCE--EEEEEECSSSCHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHhCC-ceeEEEeeEcC--CCcE--EEEEEcCCCCcHHHHHHh
Confidence 35778999999999998 565 68888777654 2222 399999988888776544
No 410
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=48.43 E-value=29 Score=26.42 Aligned_cols=54 Identities=22% Similarity=0.248 Sum_probs=38.7
Q ss_pred EEcCCCCCCcHHHHHHHHhh-cCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHH
Q 013047 34 FVGNICNTWTKEAIKQKLKD-YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92 (450)
Q Consensus 34 yV~nLp~~~te~dL~~~F~~-~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al 92 (450)
|+=.+...+|+.+|++.+++ |+. .|.+|..+.-+. +.- =|+|++...++|....
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~V-kV~~VNT~~~~~--~~K--KA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYDV-TVEQVNTQNTMD--GEK--KAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCC-CEEEEEEEECTT--SSE--EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHhCC-CceEEEeeecCC--Cce--EEEEEECCCCcHHHHH
Confidence 34456789999999999998 575 688887776542 222 3999998777765554
No 411
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=46.57 E-value=50 Score=23.19 Aligned_cols=54 Identities=7% Similarity=0.035 Sum_probs=41.7
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 189 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~ 189 (450)
.++.|.++.=......|+..+.+ -.|..+.+-. ..+.+.|+|.+.+...++|+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~------~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL------NEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS------SEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc------cCCEEEEEECCHHHHHHHHHH
Confidence 46789999888888999999998 7788777743 345678888866777777764
No 412
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=45.85 E-value=89 Score=23.88 Aligned_cols=64 Identities=9% Similarity=0.218 Sum_probs=48.7
Q ss_pred CCCCCCcHHHHHHHHhh-cCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEeecC
Q 013047 37 NICNTWTKEAIKQKLKD-YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 115 (450)
Q Consensus 37 nLp~~~te~dL~~~F~~-~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~ 115 (450)
.++..++-++|.+..+. ||. -.++..+.+. -.|-..+.+|..+||+.|+.+.. -+.|+|-...
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq--~ldl~y~nnE---------L~iPL~~Q~DLDkAvelLDrs~~-----mkSLRIlL~~ 82 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQ--PLDLHYMNNE---------LSILLKNQDDLDKAIDILDRSSS-----MKSLRILLLS 82 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCS--SEEEEEECSS---------CEEECCSHHHHHHHHHHHHHSTT-----TTEEEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCC--eeeeEEecce---------eEEeccCHHHHHHHHHHhccCcc-----ccceEEEEEc
Confidence 55777888888887765 888 7788777542 56999999999999998887764 4666665544
Q ss_pred C
Q 013047 116 P 116 (450)
Q Consensus 116 ~ 116 (450)
+
T Consensus 83 ~ 83 (94)
T 2jrh_A 83 Q 83 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 413
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=44.92 E-value=40 Score=29.24 Aligned_cols=48 Identities=17% Similarity=0.150 Sum_probs=34.5
Q ss_pred eEEEcCCCCC---------CcHHHHHHHH--hhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCH
Q 013047 32 TLFVGNICNT---------WTKEAIKQKL--KDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH 85 (450)
Q Consensus 32 ~lyV~nLp~~---------~te~dL~~~F--~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~ 85 (450)
++.|-|++.. ...++|++.| ..|.+ ..|+.+.++ .-+.|+|.|+|.+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p---~kv~~l~~~---~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNP---TRVRPLWNY---LGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCC---SEEEEEECS---SBEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCC---ceeEecccC---CCCceeEEEEecCC
Confidence 6677788862 3347899977 89986 446666653 34779999999863
No 414
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=44.47 E-value=93 Score=24.09 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=44.1
Q ss_pred EcCCCCCCcHHHHHHHHhh-cCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCc
Q 013047 35 VGNICNTWTKEAIKQKLKD-YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 100 (450)
Q Consensus 35 V~nLp~~~te~dL~~~F~~-~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~ 100 (450)
|=.++.-++-++|.+.... ||. -.++..+.+. -.|-..+.+|..+||+.|+.+..
T Consensus 33 Ii~f~RPv~f~el~~kv~~afGq--~ldl~y~nnE---------L~iPL~~Q~DLDkAvelLDrs~~ 88 (100)
T 2npt_B 33 ILQFPRPVKLEDLRSKAKIAFGQ--SMDLHYTNNE---------LVIPLTTQDDLDKAVELLDRSIH 88 (100)
T ss_dssp EEEECSSCCHHHHHHHHHHHHTS--CEEEEEEETT---------EEEECCCHHHHHHHHHHHHHCSS
T ss_pred EEecCCCccHHHHHHHHHHHhCC--eeeeEEecce---------eEEecccHHHHHHHHHHhccCcc
Confidence 3356788899999888765 888 8888887642 67999999999999998877654
No 415
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=43.13 E-value=63 Score=23.32 Aligned_cols=58 Identities=9% Similarity=0.137 Sum_probs=36.2
Q ss_pred CCchhHHHHHhhhccCc-----eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 013047 138 PHWKENQIRDQIKGYGD-----VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 204 (450)
Q Consensus 138 ~~~te~dL~~~F~~~G~-----v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g~~~~g~~i~v~v 204 (450)
..+...+|..++..-+. |-.|.|.. .|.||+-... .|++++++|++..+.++.+.++.
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEEE
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhccccCcCceEEEEE
Confidence 34677778777775543 45666643 3789998755 46678889999999998876654
No 416
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=42.66 E-value=31 Score=29.24 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=38.4
Q ss_pred CCCCCCcHHHHHHHHhh-cCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHH
Q 013047 37 NICNTWTKEAIKQKLKD-YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK 93 (450)
Q Consensus 37 nLp~~~te~dL~~~F~~-~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~ 93 (450)
-+...+|+.+|++.+++ |+. .|..|..+.-+ .+.- =|||.+....||.++..
T Consensus 95 ~Vd~~AnK~qIK~AVEklf~V-kV~kVNTl~~~--~g~K--KAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 95 IVDLKADKKKIKAAVKKMYDI-QAKKVNTLIRP--DGKK--KAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EECSSCCSHHHHHHHHHHHTC-CEEEEEEEECT--TSSE--EEEEEECTTSCHHHHHG
T ss_pred EEcCCCCHHHHHHHHHHHhCC-cceEEEeeEcC--CCce--EEEEEcCCCCcHHHHHH
Confidence 45778999999999988 565 68888777644 2222 39999998888877654
No 417
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=40.94 E-value=27 Score=26.13 Aligned_cols=44 Identities=20% Similarity=0.313 Sum_probs=30.3
Q ss_pred CcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCc
Q 013047 42 WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 100 (450)
Q Consensus 42 ~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~ 100 (450)
-|+++|+.+++.|-. +-++|+++ |...+.++..+|.+..+..++
T Consensus 33 ktedelkkyleefrk-esqnikvl--------------ilvsndeeldkakelaqkmei 76 (110)
T 2kpo_A 33 KTEDELKKYLEEFRK-ESQNIKVL--------------ILVSNDEELDKAKELAQKMEI 76 (110)
T ss_dssp CSHHHHHHHHHHHTS-STTSEEEE--------------EEESSHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHh-hccCeEEE--------------EEEcChHHHHHHHHHHHhhce
Confidence 489999999999975 34455443 555677888888765555544
No 418
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=39.76 E-value=79 Score=24.81 Aligned_cols=60 Identities=10% Similarity=0.228 Sum_probs=46.2
Q ss_pred CCCCCCcHHHHHHHHhh-cCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEe
Q 013047 37 NICNTWTKEAIKQKLKD-YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVA 112 (450)
Q Consensus 37 nLp~~~te~dL~~~F~~-~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~ 112 (450)
.++.-++-++|.+..+. ||. -.++..+.+. -.|-..+.+|..+||+.|+.... .+.|+|-
T Consensus 46 qf~RPvkf~dl~qkv~~afGq--~ldl~y~nnE---------L~IPL~~Q~DLDkAvelLDrs~~-----mkSLRIl 106 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQ--PLDLHYMNNE---------LSILLKNQDDLDKAIDILDRSSS-----MKSLRIL 106 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSS--CCEEEEECSS---------CEEECCSHHHHHHHHHHHHHCSS-----CCSEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCC--eeeeEEecce---------EEEecccHHHHHHHHHHhccCcc-----ccceEEE
Confidence 56778898999887765 888 8888877543 56899999999999998887654 3555554
No 419
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=36.46 E-value=66 Score=27.36 Aligned_cols=55 Identities=25% Similarity=0.289 Sum_probs=39.1
Q ss_pred EcCCCCCCcHHHHHHHHhh-cCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013047 35 VGNICNTWTKEAIKQKLKD-YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 94 (450)
Q Consensus 35 V~nLp~~~te~dL~~~F~~-~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~ 94 (450)
+=.+...+|+.+|++.+++ |+. .|..|..+.-+. +.- =|+|++....+|......
T Consensus 97 vF~Vd~~AnK~qIK~AVEklf~V-kV~kVNTl~~~~--~~K--KAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 97 VFIVDVKANKHQIKQAVKKLYDI-DVAKVNTLIRPD--GEK--KAYVRLAPDYDALDVANK 152 (156)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCC-CEEEEEEEECSS--SCE--EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-cceEEEeeEcCC--Cce--EEEEEECCCCcHHHHHHh
Confidence 3346778999999999998 575 688887776432 211 399999887776665543
No 420
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=35.67 E-value=35 Score=31.79 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=27.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEe
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS 66 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~ 66 (450)
...+.|+|||+.++...|..+++. .. +..+.+|.
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~--~~~~~lm~ 143 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GR--FARLVFLV 143 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CC--EEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CC--CCEEEEEe
Confidence 457899999999999999999988 55 66655554
No 421
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=33.60 E-value=1.2e+02 Score=21.08 Aligned_cols=55 Identities=7% Similarity=-0.058 Sum_probs=40.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 94 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~ 94 (450)
..+|.|.++.-..-...|++.+++ -- |..+.+-.. .+-+.|+|.+.++..++|+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~g--v~~~~v~~~-------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AG--AKVEKVDLN-------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TT--CEEEEECSS-------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CC--cEEEEEEcc-------CCEEEEEECCHHHHHHHHHH
Confidence 357889999887788999999998 54 887776442 25678888866666677764
No 422
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=32.75 E-value=1.4e+02 Score=23.45 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=33.1
Q ss_pred CCCcHHHHHHHHhhc-CC-CCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHH
Q 013047 40 NTWTKEAIKQKLKDY-GV-EGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK 93 (450)
Q Consensus 40 ~~~te~dL~~~F~~~-G~-~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~ 93 (450)
.+.+..+|++.+.+. +. .++.-|.=++..-..+.+.|||.| |.+.+.|++.-.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~Ep 82 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVEQ 82 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhCc
Confidence 567889999888874 44 112223323333235788888865 788877777653
No 423
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=31.81 E-value=1.7e+02 Score=22.31 Aligned_cols=58 Identities=10% Similarity=0.104 Sum_probs=44.7
Q ss_pred CccEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 013047 127 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 192 (450)
Q Consensus 127 ~~~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e~A~~Ai~~l~g 192 (450)
+.+-|-|-|+|..+-..++.-.....|---.|..+ .|-|.|.|.+.++..-||++|-.
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHh
Confidence 45667888999998888877666677755566654 34699999999999999988743
No 424
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=31.44 E-value=1.3e+02 Score=20.72 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=41.6
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeC----CHHHHHHHHHH
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFS----THEAAVACINA 189 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~----s~e~A~~Ai~~ 189 (450)
.++.|.++.=......|+..+.+.-.|..+.+-.. .+.+.|+|+ +.++..++|+.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 36778888877788899999998877888877543 456788885 56677777765
No 425
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=31.23 E-value=2.2e+02 Score=24.58 Aligned_cols=123 Identities=14% Similarity=0.070 Sum_probs=63.6
Q ss_pred eEEEcCC----CCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeC-CHHHHHH----HHHHhCCCCccc
Q 013047 32 TLFVGNI----CNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS-CHVDAMA----AYKRLQKPDVVF 102 (450)
Q Consensus 32 ~lyV~nL----p~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~-~~edA~~----Al~~l~~~~~~~ 102 (450)
.++|++| ...+.-.||+++|+..| .++|+-... + |..+.+-. +.++.+. +|++--+.++
T Consensus 8 iaLLRGINVGG~nkv~MadLr~~l~~lG---f~~V~TyI~---S----GNvvF~s~~~~~~l~~~ie~~l~~~fg~~v-- 75 (183)
T 2hiy_A 8 ALLVRGINVGGKNKVVMAELRQELTNLG---LEKVESYIN---S----GNIFFTSIDSKAQLVEKLETFFAVHYPFIQ-- 75 (183)
T ss_dssp EEECSSCSCC-CCCCCHHHHHHHHHHHT---CEEEEEETT---T----TEEEEEECSCHHHHHHHHHHHHHHHCTTCC--
T ss_pred hhhccceecCCCCcccHHHHHHHHHHcC---CccceEEEe---c----CCEEEecCCCHHHHHHHHHHHHHHhcCCCC--
Confidence 5677887 34688999999999999 677766643 3 44444433 3233333 3333222221
Q ss_pred CCCCceEEEeecCCC--CCCCccc-cCCccEEEEcCCCCCchhHHHHHhhhccC-ceEEEEEEecCCCCCcceEEEE-Ee
Q 013047 103 GHPERTVKVAFAEPL--REPDPEI-MAHVKTVFLDGVPPHWKENQIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFI-DF 177 (450)
Q Consensus 103 g~~gr~i~v~~a~~~--~~~~~~~-~~~~~~lfV~nLp~~~te~dL~~~F~~~G-~v~~v~i~~d~~~g~~rG~afV-~F 177 (450)
..+....++-. ....+-. .....+++|-=|....+.++|.+.+.... ..+.+.+. .+..|+ .|
T Consensus 76 ----~v~vrs~~el~~i~~~~Pf~~~~~~~~~~v~F~~~~~~~~~~~~~l~~~~~~~E~~~~~--------~~~iy~~~~ 143 (183)
T 2hiy_A 76 ----SFSLLSLEDFEAELENLPAWWSRDLARKDFLFYTEGLDVDQVIATVESLELKDEVLYFG--------KLGIFWGKF 143 (183)
T ss_dssp ----CCEEEEHHHHHHHHTTCCGGGGSCCSEEEEEEECTTCCHHHHHHHHHTSCCCSEEEEEC--------SSEEEEEEC
T ss_pred ----CEEEecHHHHHHHHHhCCCCccCCCcEEEEEEECCCCChHHHHHHhhccCCCCeEEEEE--------CCEEEEEEe
Confidence 12222211100 0001100 11345677777777778888666555432 34555552 235677 67
Q ss_pred C
Q 013047 178 S 178 (450)
Q Consensus 178 ~ 178 (450)
.
T Consensus 144 ~ 144 (183)
T 2hiy_A 144 S 144 (183)
T ss_dssp C
T ss_pred C
Confidence 3
No 426
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=31.00 E-value=56 Score=33.42 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=36.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhc---CCCCeeEEEEEeCCCCCCCeeeE-EEEEeCCHHHHHHHHHHhCCC
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDY---GVEGVENINLVSDIQHEGLSRGF-AFVMFSCHVDAMAAYKRLQKP 98 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~---G~~~V~~i~l~~d~~~tg~skG~-aFVeF~~~edA~~Al~~l~~~ 98 (450)
.++|.|.-||..++.+.|.+..... +. |..|.=++|.. + ..|. -.|+++...+++..++.|-+.
T Consensus 275 ~~~IvITElPy~v~k~~lie~I~~lv~~kk--i~~I~dirDes-d--~~gvrivIelk~~~~~e~vl~~L~k~ 342 (514)
T 2inr_A 275 RKQLIITEIPYEVNKSSLVKRIDELRADKK--VDGIVEVRDET-D--RTGLRIAIELKKDVNSESIKNYLYKN 342 (514)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTS--CC---CEEECC-B--TTBCCEEEEC------CHHHHHHTTS
T ss_pred ccEEEEEecCceeeHHHHHHHHHHHHhcCC--cCccchhhhcC-C--CCceEEEEEECCCcCHHHHHHHHHHh
Confidence 3689999999999999888776653 33 55555555542 1 1233 346677777777777766543
No 427
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=30.48 E-value=1.5e+02 Score=23.45 Aligned_cols=51 Identities=16% Similarity=0.127 Sum_probs=31.8
Q ss_pred CCCcHHHHHHHHhh-cCC-CCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHH
Q 013047 40 NTWTKEAIKQKLKD-YGV-EGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 91 (450)
Q Consensus 40 ~~~te~dL~~~F~~-~G~-~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~A 91 (450)
.+.+..+|++.+.+ |+. .++.-|.=++..-..+.+.|||.| |.|.+.|++.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 46778888888876 454 112223333333235788899966 7888887765
No 428
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=30.15 E-value=1.4e+02 Score=23.40 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=31.9
Q ss_pred CCCcHHHHHHHHhh-cCCC-CeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHH
Q 013047 40 NTWTKEAIKQKLKD-YGVE-GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 91 (450)
Q Consensus 40 ~~~te~dL~~~F~~-~G~~-~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~A 91 (450)
.+.+..+|++.+.+ |+.. ++.-|.=++..-..+.+.|||.| |.+.+.|++.
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 80 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMATI 80 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56788999988887 4541 12223323333235788899865 7888777654
No 429
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=28.96 E-value=94 Score=21.05 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=39.7
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeC---CHHHHHHHHHH
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFS---THEAAVACINA 189 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~---s~e~A~~Ai~~ 189 (450)
.++.|.++.-......|+..+.+...|..+.+-.. .+.+.|+|. +.++..++|+.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHH
Confidence 46778888888888999999999877888877543 345778874 34555666653
No 430
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=34.56 E-value=12 Score=29.82 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=38.2
Q ss_pred EEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeE--EEEEeCCHHHHHHHHHHhCCC
Q 013047 34 FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF--AFVMFSCHVDAMAAYKRLQKP 98 (450)
Q Consensus 34 yV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~--aFVeF~~~edA~~Al~~l~~~ 98 (450)
|.=.|--..++++|..|..+++ +..+.+.+... .|+. =| -+=.|.+.++|.+|++.|...
T Consensus 26 YTLQL~a~~~~~~l~~f~~~~~---l~~~~v~~t~r-nGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~ 87 (106)
T 2lfv_A 26 YTLQLSSSSNYDNLNGWAKKEN---LKNYVVYETTR-NGQP-WYVLVSGVYASKEEAKKAVSTLPAD 87 (106)
Confidence 4445555567888899888886 44566665322 1211 12 223688999999999988754
No 431
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=26.74 E-value=15 Score=31.18 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=17.9
Q ss_pred HHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeC
Q 013047 143 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFS 178 (450)
Q Consensus 143 ~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~ 178 (450)
+|+.++|...|.|++... .+||+||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 566677877787766533 5789999876
No 432
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=26.70 E-value=2.5e+02 Score=22.52 Aligned_cols=89 Identities=13% Similarity=0.158 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHhCCCCcccCCCCceEEEeecCCCCCCCccccCCccEEEEcCCCCCchhHH---HHHhhhccCceEEEE
Q 013047 83 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ---IRDQIKGYGDVIRIV 159 (450)
Q Consensus 83 ~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~~te~d---L~~~F~~~G~v~~v~ 159 (450)
.+.|.-++|++.|-..--.+. + ++..... ...-.|.|.++|.++.++- .+.+-..|..-+...
T Consensus 11 ddlea~ekalkemirqarkfa--g-tvtytl~-----------gn~l~i~itgvpeqvrkelakeaerl~~efni~v~y~ 76 (170)
T 4hhu_A 11 DDLEALEKALKEMIRQARKFA--G-TVTYTLS-----------GNRLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQ 76 (170)
T ss_dssp SCHHHHHHHHHHHHHHHHHTT--C-EEEEEEE-----------TTEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CcHHHHHHHHHHHHHHHHhhc--c-eEEEEEe-----------CCEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEE
Confidence 478888999987643322211 1 2222111 1223577899998875432 223334455444555
Q ss_pred EEecCCCCCcceEEEEEe--CCHHHHHHHHHHh
Q 013047 160 LARNMSTAKRKDYGFIDF--STHEAAVACINAI 190 (450)
Q Consensus 160 i~~d~~~g~~rG~afV~F--~s~e~A~~Ai~~l 190 (450)
|+-. ..|...|.| ++.++.++|++.|
T Consensus 77 imgs-----gsgvm~i~f~gddlea~ekalkem 104 (170)
T 4hhu_A 77 IMGS-----GSGVMVIVFEGDDLEALEKALKEM 104 (170)
T ss_dssp EECT-----TCCEEEEEEECSCHHHHHHHHHHH
T ss_pred EEeC-----CceEEEEEEecCcHHHHHHHHHHH
Confidence 5533 456777778 5788888888654
No 433
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=26.70 E-value=1.6e+02 Score=22.94 Aligned_cols=60 Identities=17% Similarity=0.279 Sum_probs=36.8
Q ss_pred EEEcCCCCCCcHHHHHHHHhhcC-----CCCeeEEEEEeCCCCCCCeee---EEEEEeCCHHHHHHHH
Q 013047 33 LFVGNICNTWTKEAIKQKLKDYG-----VEGVENINLVSDIQHEGLSRG---FAFVMFSCHVDAMAAY 92 (450)
Q Consensus 33 lyV~nLp~~~te~dL~~~F~~~G-----~~~V~~i~l~~d~~~tg~skG---~aFVeF~~~edA~~Al 92 (450)
|.+=.|..+++++++.++.+.+- ...|+++.+=.+...++..+| ...++|++.++.+.-+
T Consensus 14 iVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~ 81 (112)
T 1q4r_A 14 VLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYI 81 (112)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHh
Confidence 34446778888877666655431 245888877766432233344 4667899998866543
No 434
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=25.22 E-value=14 Score=31.32 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=17.6
Q ss_pred HHHHHHHhhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeC
Q 013047 45 EAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 83 (450)
Q Consensus 45 ~dL~~~F~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~ 83 (450)
+|+.++|...|+ |+++.+. |||+||+-.
T Consensus 2 ~~~~~l~~~~G~-----Vkwfn~~------kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGI-----CKWFNVR------MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEE-----EEEEETT------TTEEEEEEE
T ss_pred CcccccccceeE-----EEEEECC------CCeeEEeeC
Confidence 456677777776 6777653 499999876
No 435
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=25.21 E-value=1.7e+02 Score=23.29 Aligned_cols=61 Identities=11% Similarity=0.047 Sum_probs=37.1
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhc----C-CCCeeEEEEEeCCCCCCCeeeE---EEEEeCCHHHHHHHH
Q 013047 32 TLFVGNICNTWTKEAIKQKLKDY----G-VEGVENINLVSDIQHEGLSRGF---AFVMFSCHVDAMAAY 92 (450)
Q Consensus 32 ~lyV~nLp~~~te~dL~~~F~~~----G-~~~V~~i~l~~d~~~tg~skG~---aFVeF~~~edA~~Al 92 (450)
-|.+=.|..+++++++.++.+.+ + ...|+++.+=.+....+..+|| ..++|++.++-+.-+
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~ 91 (121)
T 3bb5_A 23 HLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYA 91 (121)
T ss_dssp EEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHH
Confidence 34444788888887766665542 1 2458888776654311344443 557889888766543
No 436
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=24.10 E-value=1.1e+02 Score=26.74 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=22.4
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCCCcccCCCCceEEEee
Q 013047 76 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAF 113 (450)
Q Consensus 76 G~aFVeF~~~edA~~Al~~l~~~~~~~g~~gr~i~v~~ 113 (450)
--.||.|++.++|.++++ .+..+ +.|.|--
T Consensus 98 ~~v~il~k~p~d~~~lve--~Gv~i------~~vNvG~ 127 (187)
T 3lfj_A 98 EKVFLLFKNIDTCKRVMD--GGLPI------TTLNIGG 127 (187)
T ss_dssp EEEEEEESSHHHHHHHHH--TTCCC------SEEEEEE
T ss_pred ceEEEEECCHHHHHHHHH--cCCCC------CEEEECC
Confidence 469999999999999987 34333 5566654
No 437
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=23.62 E-value=1.7e+02 Score=25.26 Aligned_cols=56 Identities=11% Similarity=0.191 Sum_probs=36.4
Q ss_pred cEEEEcCCCCC---------chhHHHHHhh--hccCceEEEEEEecCCCCCcceEEEEEeCCHH-HHHHHH
Q 013047 129 KTVFLDGVPPH---------WKENQIRDQI--KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE-AAVACI 187 (450)
Q Consensus 129 ~~lfV~nLp~~---------~te~dL~~~F--~~~G~v~~v~i~~d~~~g~~rG~afV~F~s~e-~A~~Ai 187 (450)
-++.|-|++.+ .+.++|++.| ..|..+. |..+.+. .-.+|+++|+|.+-- -...|+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHH
Confidence 45666777762 3457899977 9998776 5455543 236789999997633 333343
No 438
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=23.44 E-value=44 Score=34.20 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=30.4
Q ss_pred HHHHHH--hhcCCCCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHH
Q 013047 46 AIKQKL--KDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 92 (450)
Q Consensus 46 dL~~~F--~~~G~~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al 92 (450)
+|..+| +.+|. |++++|...+. ......+++.|.+.++|.+|+
T Consensus 217 ~l~~l~~g~~lGi--Vt~~~l~l~p~--p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGI--CTKMGFWLMPK--PPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCE--EEEEEEECEEC--CSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEE--EEEEEEEEEec--CCeEEEEEEEeCCHHHHHHHH
Confidence 456667 36898 99998876552 334557899999988876644
No 439
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=23.25 E-value=1.7e+02 Score=22.95 Aligned_cols=32 Identities=9% Similarity=0.172 Sum_probs=24.6
Q ss_pred eeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 013047 59 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 96 (450)
Q Consensus 59 V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~Al~~l~ 96 (450)
|.+|.... ..|||.|||=.+..+++.|++-+.
T Consensus 41 I~Si~~~~------~lkGyIyVEA~~~~~V~~ai~gi~ 72 (106)
T 3h7h_B 41 IKSVVAPE------HVKGYIYVEAYKQTHVKQAIEGVG 72 (106)
T ss_dssp CCEEEECT------TCCSEEEEEESSHHHHHHHHTTCG
T ss_pred eEEEEecC------CCceEEEEEeCCHHHHHHHHhccc
Confidence 66665543 257999999999999999986543
No 440
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=23.23 E-value=80 Score=26.07 Aligned_cols=66 Identities=11% Similarity=0.102 Sum_probs=39.2
Q ss_pred CcccccCCCCCCCeEE-EcCCCCCCcHHHHHHHHh-hcCCCCeeEEEEEeCCC---------CCCCeeeEEEEEeCC
Q 013047 19 GKRCGTAPSEDNDTLF-VGNICNTWTKEAIKQKLK-DYGVEGVENINLVSDIQ---------HEGLSRGFAFVMFSC 84 (450)
Q Consensus 19 ~k~~~~~~~~~~~~ly-V~nLp~~~te~dL~~~F~-~~G~~~V~~i~l~~d~~---------~tg~skG~aFVeF~~ 84 (450)
++.+-+..+.+...|. |-.+...++++++++.+. .+....|.+|+|=.... +.....+|.||.|++
T Consensus 51 g~~~~V~Vp~~~~~v~~v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~ 127 (136)
T 2gu3_A 51 GTALYVWVPADKKAKILSKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTT 127 (136)
T ss_dssp CCEEEEEEESSTTSCCEEEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTT
T ss_pred CCEEEEEEECCCCeEEEEEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeC
Confidence 4444433334344444 778888899999999995 45533466555421100 013345799999985
No 441
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=22.89 E-value=2.1e+02 Score=23.59 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=32.5
Q ss_pred CCCcHHHHHHHHhh-cCC-CCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHH
Q 013047 40 NTWTKEAIKQKLKD-YGV-EGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 91 (450)
Q Consensus 40 ~~~te~dL~~~F~~-~G~-~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~A 91 (450)
.+.+..+|++.+.. |+. .+++-|.=++..-..+.+.|||.| |.+.+.|.+.
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 46789999999976 454 122233333333335678888876 7888777765
No 442
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=22.58 E-value=2.3e+02 Score=23.83 Aligned_cols=51 Identities=25% Similarity=0.237 Sum_probs=32.2
Q ss_pred CCCcHHHHHHHHhh-cCC-CCeeEEEEEeCCCCCCCeeeEEEEEeCCHHHHHHH
Q 013047 40 NTWTKEAIKQKLKD-YGV-EGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 91 (450)
Q Consensus 40 ~~~te~dL~~~F~~-~G~-~~V~~i~l~~d~~~tg~skG~aFVeF~~~edA~~A 91 (450)
.+.+..||++.+.. |+. .+++-|.=+...-..+.+.|||.| |.+.+.|.+.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 46788899988887 554 112222223332235688899976 7888777765
No 443
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=21.69 E-value=1.8e+02 Score=22.35 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=35.9
Q ss_pred EEEcCCCCCCcHHHHHHHHhhc-----CCCCeeEEEEEeCCCCC--CCeee---EEEEEeCCHHHHHHH
Q 013047 33 LFVGNICNTWTKEAIKQKLKDY-----GVEGVENINLVSDIQHE--GLSRG---FAFVMFSCHVDAMAA 91 (450)
Q Consensus 33 lyV~nLp~~~te~dL~~~F~~~-----G~~~V~~i~l~~d~~~t--g~skG---~aFVeF~~~edA~~A 91 (450)
|.+=.|..+++++++.++.+.+ ....|+++.+=.+...+ +..+| ...++|++.++-+.-
T Consensus 12 iVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y 80 (108)
T 1tr0_A 12 TLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQEY 80 (108)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHHH
Confidence 3444677888888766665443 13458888877664312 33344 356788988876543
No 444
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=21.59 E-value=1.8e+02 Score=19.13 Aligned_cols=56 Identities=9% Similarity=0.069 Sum_probs=38.2
Q ss_pred cEEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeCC---HHHHHHHHHHh
Q 013047 129 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST---HEAAVACINAI 190 (450)
Q Consensus 129 ~~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~s---~e~A~~Ai~~l 190 (450)
.++.|.++.-......|+..+.+...|..+.+-.. .+.+.|+|.. .+...++|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 35778888776677888999988877888777543 3457788864 34455555543
No 445
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=21.26 E-value=61 Score=25.50 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=11.7
Q ss_pred EEeCCHHHHHHHHHHhCC
Q 013047 175 IDFSTHEAAVACINAINN 192 (450)
Q Consensus 175 V~F~s~e~A~~Ai~~l~g 192 (450)
...-+.+.+++|++.+..
T Consensus 59 ~I~G~~e~v~~A~~~I~~ 76 (106)
T 2hh3_A 59 HIMGPPDRCEHAARIIND 76 (106)
T ss_dssp EEESSHHHHHHHHHHHHH
T ss_pred EEEeCHHHHHHHHHHHHH
Confidence 334678888888776543
No 446
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=20.77 E-value=1.8e+02 Score=18.79 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=37.6
Q ss_pred EEEEcCCCCCchhHHHHHhhhccCceEEEEEEecCCCCCcceEEEEEeC---CHHHHHHHHHHh
Q 013047 130 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFS---THEAAVACINAI 190 (450)
Q Consensus 130 ~lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~~g~~rG~afV~F~---s~e~A~~Ai~~l 190 (450)
++.|.++.-......|+..+.+...|..+.+-.. .+.+.|++. +.+...++|+.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 4567777766777889899988877877777442 345778875 445556666543
No 447
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=20.43 E-value=63 Score=29.61 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=26.3
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEe
Q 013047 32 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS 66 (450)
Q Consensus 32 ~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~ 66 (450)
...|+|||+.++...|..+++.... +..+.+|.
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~--~~~~~lm~ 130 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHC--IEDMHFML 130 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGG--EEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCC--hheEEEEE
Confidence 4589999999999999999987655 66665554
No 448
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=20.00 E-value=54 Score=30.56 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=27.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCCCeeEEEEEe
Q 013047 30 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS 66 (450)
Q Consensus 30 ~~~lyV~nLp~~~te~dL~~~F~~~G~~~V~~i~l~~ 66 (450)
...+.|+|||+.++..-|..+++.... +..+.+|.
T Consensus 114 ~~~~vv~NlPY~iss~il~~ll~~~~~--~~~~~~m~ 148 (279)
T 3uzu_A 114 PSLRIIGNLPYNISSPLLFHLMSFAPV--VIDQHFML 148 (279)
T ss_dssp CCEEEEEECCHHHHHHHHHHHGGGGGG--EEEEEEEE
T ss_pred CceEEEEccCccccHHHHHHHHhccCC--ccEEEEEe
Confidence 346799999999999999999986544 66666554
Done!