BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013048
(450 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 145/295 (49%), Gaps = 21/295 (7%)
Query: 1 MHGRPRKPLKPEDXXXXXXXXE-KLRVLQSQ---FLHNHHNHIYSKEAVELSTKLLETNP 56
MHGR + E E KL++ QS + +EL++++L NP
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60
Query: 57 ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116
+ T WN R+ +QH E + P+ +++ EL +ES LR N KSYG WHHR W+LS
Sbjct: 61 DFATLWNCRREVLQH--LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118
Query: 117 K-GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175
+ + EL L +F +AD RNFH W+YRRFVAA + +EL +T+ +I NFSNY
Sbjct: 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 178
Query: 176 SAWHXXXXXXXXXXXXXVEGFVSK--EKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233
S+WH G + E VL E E V A FTDP+DQS WFYH WLL +
Sbjct: 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238
Query: 234 TVRVDSPQLVSSWPTPGSDLILLGDRCLDGCASSPFTRFHLDSRTFPLVLYFNQA 288
D V + + CL C S P T + SR L+L ++A
Sbjct: 239 AEPHDVLCCVH---------VSREEACLSVCFSRPLT---VGSRMGTLLLMVDEA 281
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 131/248 (52%), Gaps = 17/248 (6%)
Query: 44 AVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK 103
+EL++++L NP+ T WN R+ +QH E + P+ +++ EL +ES LR N K
Sbjct: 48 VLELTSQILGANPDFATLWNCRREVLQH--LETEKSPEESAALVKAELGFLESCLRVNPK 105
Query: 104 SYGAWHHRKWILSK-GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELK 162
SYG WHHR W+LS+ + EL L +F +AD RNFH W+YRRFVAA + +EL
Sbjct: 106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 165
Query: 163 YTEDMICNNFSNYSAWHXXXXXXXXXXXXXVEGFVSK--EKVLPDEYEFVHQAIFTDPDD 220
+T+ +I NFSNYS+WH G + E VL E E V A FTDP+D
Sbjct: 166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND 225
Query: 221 QSGWFYHLWLLDQTVRVDSPQLVSSWPTPGSDLILLGDRCLDGCASSPFTRFHLDSRTFP 280
QS WFYH WLL + D V + + CL C S P T + SR
Sbjct: 226 QSAWFYHRWLLGRAEPHDVLCCVH---------VSREEACLSVCFSRPLT---VGSRMGT 273
Query: 281 LVLYFNQA 288
L+L ++A
Sbjct: 274 LLLMVDEA 281
>pdb|4EHM|A Chain A, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 154 bits (390), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 125/238 (52%), Gaps = 9/238 (3%)
Query: 1 MHGRPRKPLKPEDXXXXXXXXE-KLRVLQSQ---FLHNHHNHIYSKEAVELSTKLLETNP 56
MHGR + E E KL++ QS + +EL++++L NP
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60
Query: 57 ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116
+ T WN R+ +QH E + P+ +++ EL +ES LR N KSYG WHHR W+LS
Sbjct: 61 DFATLWNCRREVLQH--LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118
Query: 117 K-GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175
+ + EL L +F +AD RNFH W+YRRFVAA + +EL +T+ +I NFSNY
Sbjct: 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 178
Query: 176 SAWHXXXXXXXXXXXXXVEGFVSK--EKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231
S+WH G + E VL E E V A FTDP+DQS WFYH WLL
Sbjct: 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 236
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSL--KSILDEELRVVESALRQ 100
E + + L+ N Y++W+YR + + DS P +++L +EL +V++A
Sbjct: 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 221
Query: 101 NFKSYGAWHHRKWILSKGHSSID 123
+ AW + +W+L G +
Sbjct: 222 DPNDQSAWFYHRWLLGAGSGRCE 244
>pdb|3PZ1|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
Length = 332
Score = 154 bits (390), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 125/238 (52%), Gaps = 9/238 (3%)
Query: 1 MHGRPRKPLKPEDXXXXXXXXE-KLRVLQSQ---FLHNHHNHIYSKEAVELSTKLLETNP 56
MHGR + E E KL++ QS + +EL++++L NP
Sbjct: 3 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 62
Query: 57 ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116
+ T WN R+ +QH E + P+ +++ EL +ES LR N KSYG WHHR W+LS
Sbjct: 63 DFATLWNCRREVLQH--LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 120
Query: 117 K-GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175
+ + EL L +F +AD RNFH W+YRRFVAA + +EL +T+ +I NFSNY
Sbjct: 121 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 180
Query: 176 SAWHXXXXXXXXXXXXXVEGFVSK--EKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231
S+WH G + E VL E E V A FTDP+DQS WFYH WLL
Sbjct: 181 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 238
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSL--KSILDEELRVVESALRQ 100
E + + L+ N Y++W+YR + + DS P +++L +EL +V++A
Sbjct: 164 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 223
Query: 101 NFKSYGAWHHRKWILSKGHSSID 123
+ AW + +W+L G +
Sbjct: 224 DPNDQSAWFYHRWLLGAGSGRCE 246
>pdb|3DSS|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 154 bits (390), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 125/238 (52%), Gaps = 9/238 (3%)
Query: 1 MHGRPRKPLKPEDXXXXXXXXE-KLRVLQSQ---FLHNHHNHIYSKEAVELSTKLLETNP 56
MHGR + E E KL++ QS + +EL++++L NP
Sbjct: 2 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 61
Query: 57 ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116
+ T WN R+ +QH E + P+ +++ EL +ES LR N KSYG WHHR W+LS
Sbjct: 62 DFATLWNCRREVLQH--LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119
Query: 117 K-GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175
+ + EL L +F +AD RNFH W+YRRFVAA + +EL +T+ +I NFSNY
Sbjct: 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 179
Query: 176 SAWHXXXXXXXXXXXXXVEGFVSK--EKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231
S+WH G + E VL E E V A FTDP+DQS WFYH WLL
Sbjct: 180 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 237
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSL--KSILDEELRVVESALRQ 100
E + + L+ N Y++W+YR + + DS P +++L +EL +V++A
Sbjct: 163 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222
Query: 101 NFKSYGAWHHRKWILSKGHSSID 123
+ AW + +W+L G +
Sbjct: 223 DPNDQSAWFYHRWLLGAGSGRCE 245
>pdb|3C72|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
Length = 334
Score = 154 bits (390), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 125/238 (52%), Gaps = 9/238 (3%)
Query: 1 MHGRPRKPLKPEDXXXXXXXXE-KLRVLQSQ---FLHNHHNHIYSKEAVELSTKLLETNP 56
MHGR + E E KL++ QS + +EL++++L NP
Sbjct: 5 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 64
Query: 57 ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116
+ T WN R+ +QH E + P+ +++ EL +ES LR N KSYG WHHR W+LS
Sbjct: 65 DFATLWNCRREVLQH--LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 122
Query: 117 K-GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175
+ + EL L +F +AD RNFH W+YRRFVAA + +EL +T+ +I NFSNY
Sbjct: 123 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 182
Query: 176 SAWHXXXXXXXXXXXXXVEGFVSK--EKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231
S+WH G + E VL E E V A FTDP+DQS WFYH WLL
Sbjct: 183 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 240
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSL--KSILDEELRVVESALRQ 100
E + + L+ N Y++W+YR + + DS P +++L +EL +V++A
Sbjct: 166 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 225
Query: 101 NFKSYGAWHHRKWILSKGHSSID 123
+ AW + +W+L G +
Sbjct: 226 DPNDQSAWFYHRWLLGAGSGRCE 248
>pdb|1O5M|A Chain A, Structure Of Fpt Bound To The Inhibitor Sch66336
pdb|2ZIR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Benzofuran Inhibitor And Fpp
pdb|2ZIS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Bezoruran Inhibitor And Fpp
pdb|3KSL|A Chain A, Structure Of Fpt Bound To Datfp-Dh-Gpp
pdb|3KSQ|A Chain A, Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors
Length = 377
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 19/186 (10%)
Query: 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100
S+ A +L+ +E N YT W++R++ ++ SL+ L EE+ + + + +
Sbjct: 113 SERAFKLTRDAIELNAANYTVWHFRRVLLR-----------SLQKDLQEEMNYITAIIEE 161
Query: 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDE 160
K+Y WHHR+ +L + EL + D++N+HAW +R++V R ++E
Sbjct: 162 QPKNYQVWHHRR-VLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-RLWDNE 219
Query: 161 LKYTEDMICNNFSNYSAWHXXXXXXXXXXXXXVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220
L+Y + ++ + N S W+ G+ S VL E ++ + I P +
Sbjct: 220 LQYVDQLLKEDVRNNSVWNQRHFVISNTT-----GY-SDRAVLEREVQYTLEMIKLVPHN 273
Query: 221 QSGWFY 226
+S W Y
Sbjct: 274 ESAWNY 279
>pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid
Length = 333
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 19/186 (10%)
Query: 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100
S+ A +L+ +E N YT W++R++ ++ SL+ L EE+ + + + +
Sbjct: 69 SERAFKLTRDAIELNAANYTVWHFRRVLLR-----------SLQKDLQEEMNYITAIIEE 117
Query: 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDE 160
K+Y WHHR+ +L + EL + D++N+HAW +R++V R ++E
Sbjct: 118 QPKNYQVWHHRR-VLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-RLWDNE 175
Query: 161 LKYTEDMICNNFSNYSAWHXXXXXXXXXXXXXVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220
L+Y + ++ + N S W+ G+ S VL E ++ + I P +
Sbjct: 176 LQYVDQLLKEDVRNNSVWNQRHFVISNTT-----GY-SDRAVLEREVQYTLEMIKLVPHN 229
Query: 221 QSGWFY 226
+S W Y
Sbjct: 230 ESAWNY 235
>pdb|2BED|A Chain A, Structure Of Fpt Bound To Inhibitor Sch207736
Length = 313
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 19/186 (10%)
Query: 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100
S+ A +L+ +E N YT W++R++ ++ SL+ L EE+ + + + +
Sbjct: 60 SERAFKLTRDAIELNAANYTVWHFRRVLLR-----------SLQKDLQEEMNYITAIIEE 108
Query: 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDE 160
K+Y WHHR+ +L + EL + D++N+HAW +R++V R ++E
Sbjct: 109 QPKNYQVWHHRR-VLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-RLWDNE 166
Query: 161 LKYTEDMICNNFSNYSAWHXXXXXXXXXXXXXVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220
L+Y + ++ + N S W+ G+ S VL E ++ + I P +
Sbjct: 167 LQYVDQLLKEDVRNNSVWNQRHFVISNTT-----GY-SDRAVLEREVQYTLEMIKLVPHN 220
Query: 221 QSGWFY 226
+S W Y
Sbjct: 221 ESAWNY 226
>pdb|1O1R|A Chain A, Structure Of Fpt Bound To Ggpp
pdb|1O1S|A Chain A, Structure Of Fpt Bound To Isoprenoid Analog 3b
pdb|1O1T|A Chain A, Structure Of Fpt Bound To The Cvim-Fpp Product
Length = 380
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 19/186 (10%)
Query: 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100
S+ A +L+ +E N YT W++R++ ++ SL+ L EE+ + + + +
Sbjct: 116 SERAFKLTRDAIELNAANYTVWHFRRVLLR-----------SLQKDLQEEMNYITAIIEE 164
Query: 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDE 160
K+Y WHHR+ +L + EL + D++N+HAW +R++V R ++E
Sbjct: 165 QPKNYQVWHHRR-VLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-RLWDNE 222
Query: 161 LKYTEDMICNNFSNYSAWHXXXXXXXXXXXXXVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220
L+Y + ++ + N S W+ G+ S VL E ++ + I P +
Sbjct: 223 LQYVDQLLKEDVRNNSVWNQRHFVISNTT-----GY-SDRAVLEREVQYTLEMIKLVPHN 276
Query: 221 QSGWFY 226
+S W Y
Sbjct: 277 ESAWNY 282
>pdb|2R2L|A Chain A, Structure Of Farnesyl Protein Transferase Bound To Pb-93
Length = 315
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 19/186 (10%)
Query: 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100
S+ A +L+ +E N YT W++R++ ++ SL+ L EE+ + + + +
Sbjct: 60 SERAFKLTRDAIELNAANYTVWHFRRVLLR-----------SLQKDLQEEMNYITAIIEE 108
Query: 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDE 160
K+Y WHHR+ +L + EL + D++N+HAW +R++V R ++E
Sbjct: 109 QPKNYQVWHHRR-VLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-RLWDNE 166
Query: 161 LKYTEDMICNNFSNYSAWHXXXXXXXXXXXXXVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220
L+Y + ++ + N S W+ G+ S VL E ++ + I P +
Sbjct: 167 LQYVDQLLKEDVRNNSVWNQRHFVISNTT-----GY-SDRAVLEREVQYTLEMIKLVPHN 220
Query: 221 QSGWFY 226
+S W Y
Sbjct: 221 ESAWNY 226
>pdb|1N95|A Chain A, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase:
Glycine, Phenylalanine And Histidine Derivatives
pdb|1N9A|A Chain A, Farnesyltransferase Complex With Tetrahydropyridine
Inhibitors
pdb|1NI1|A Chain A, Imidazole And Cyanophenyl Farnesyl Transferase Inhibitors
Length = 315
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 19/186 (10%)
Query: 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100
S+ A +L+ +E N YT W++R++ ++ SL+ L EE+ + + + +
Sbjct: 59 SERAFKLTRDAIELNAANYTVWHFRRVLLR-----------SLQKDLQEEMNYITAIIEE 107
Query: 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDE 160
K+Y WHHR+ +L + EL + D++N+HAW +R++V R ++E
Sbjct: 108 QPKNYQVWHHRR-VLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-RLWDNE 165
Query: 161 LKYTEDMICNNFSNYSAWHXXXXXXXXXXXXXVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220
L+Y + ++ + N S W+ G+ S VL E ++ + I P +
Sbjct: 166 LQYVDQLLKEDVRNNSVWNQRHFVISNTT-----GY-SDRAVLEREVQYTLEMIKLVPHN 219
Query: 221 QSGWFY 226
+S W Y
Sbjct: 220 ESAWNY 225
>pdb|1NL4|A Chain A, Crystal Structure Of Rat Farnesyl Transferase In Complex
With A Potent Biphenyl Inhibitor
Length = 312
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 19/186 (10%)
Query: 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100
S+ A +L+ +E N YT W++R++ ++ SL+ L EE+ + + + +
Sbjct: 59 SERAFKLTRDAIELNAANYTVWHFRRVLLR-----------SLQKDLQEEMNYITAIIEE 107
Query: 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDE 160
K+Y WHHR+ +L + EL + D++N+HAW +R++V R ++E
Sbjct: 108 QPKNYQVWHHRR-VLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-RLWDNE 165
Query: 161 LKYTEDMICNNFSNYSAWHXXXXXXXXXXXXXVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220
L+Y + ++ + N S W+ G+ S VL E ++ + I P +
Sbjct: 166 LQYVDQLLKEDVRNNSVWNQRHFVISNTT-----GY-SDRAVLEREVQYTLEMIKLVPHN 219
Query: 221 QSGWFY 226
+S W Y
Sbjct: 220 ESAWNY 225
>pdb|3PZ4|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Bms3 And Lipid Substrate Fpp
Length = 379
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 19/186 (10%)
Query: 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100
S+ A +L+ +E N YT W++R++ ++ SL+ L EE+ + + + +
Sbjct: 115 SERAFKLTRDAIELNAANYTVWHFRRVLLR-----------SLQKDLQEEMNYIIAIIEE 163
Query: 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDE 160
K+Y WHHR+ +L + EL + D++N+HAW +R++V R ++E
Sbjct: 164 QPKNYQVWHHRR-VLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-RLWDNE 221
Query: 161 LKYTEDMICNNFSNYSAWHXXXXXXXXXXXXXVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220
L+Y + ++ + N S W+ G+ S VL E ++ + I P +
Sbjct: 222 LQYVDQLLKEDVRNNSVWNQRHFVISNTT-----GY-SDRAVLEREVQYTLEMIKLVPHN 275
Query: 221 QSGWFY 226
+S W Y
Sbjct: 276 ESAWNY 281
>pdb|1FT1|A Chain A, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
pdb|1FPP|A Chain A, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1D8D|A Chain A, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1D8E|A Chain A, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1JCR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1KZO|A Chain A, Protein Farnesyltransferase Complexed With Farnesylated
K-Ras4b Peptide Product And Farnesyl Diphosphate
Substrate Bound Simultaneously
pdb|1KZP|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
K-Ras4b Peptide Product
pdb|1N4P|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4Q|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4R|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4S|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1SA5|A Chain A, Rat Protein Farnesyltransferase Complexed With Fpp And
Bms- 214662
pdb|1S64|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1TN7|A Chain A, Protein Farnesyltransferase Complexed With A Tc21 Peptide
Substrate And A Fpp Analog At 2.3a Resolution
pdb|1TN8|A Chain A, Protein Farnesyltransferase Complexed With A H-Ras Peptide
Substrate And A Fpp Analog At 2.25a Resolution
pdb|1TNB|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNO|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNU|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNY|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNZ|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|3DPY|A Chain A, Protein Farnesyltransferase Complexed With Fpp And Caged
Tkcvim Substrate
pdb|3E30|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylene Diamine Inhibitor 4
pdb|3E32|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 2
pdb|3E33|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 7
pdb|3E34|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine-Scaffold Inhibitor 10
pdb|3EU5|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Biotingpp
pdb|3EUV|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10, W102t, Y154t) In Complex With Biotingpp
pdb|4GTM|A Chain A, Ftase In Complex With Bms Analogue 11
pdb|4GTO|A Chain A, Ftase In Complex With Bms Analogue 14
pdb|4GTP|A Chain A, Ftase In Complex With Bms Analogue 16
pdb|4GTQ|A Chain A, Ftase In Complex With Bms Analogue 12
pdb|4GTR|A Chain A, Ftase In Complex With Bms Analogue 13
Length = 377
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 19/186 (10%)
Query: 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100
S+ A +L+ +E N YT W++R++ ++ SL+ L EE+ + + + +
Sbjct: 113 SERAFKLTRDAIELNAANYTVWHFRRVLLR-----------SLQKDLQEEMNYIIAIIEE 161
Query: 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDE 160
K+Y WHHR+ +L + EL + D++N+HAW +R++V R ++E
Sbjct: 162 QPKNYQVWHHRR-VLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-RLWDNE 219
Query: 161 LKYTEDMICNNFSNYSAWHXXXXXXXXXXXXXVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220
L+Y + ++ + N S W+ G+ S VL E ++ + I P +
Sbjct: 220 LQYVDQLLKEDVRNNSVWNQRHFVISNTT-----GY-SDRAVLEREVQYTLEMIKLVPHN 273
Query: 221 QSGWFY 226
+S W Y
Sbjct: 274 ESAWNY 279
>pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
pdb|1N94|A Chain A, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase:
Glycine, Phenylalanine And Histidine Derivates
pdb|1X81|A Chain A, Farnesyl Transferase Structure Of Jansen Compound
Length = 315
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 19/186 (10%)
Query: 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100
S+ A +L+ +E N YT W++R++ ++ SL+ L EE+ + + + +
Sbjct: 59 SERAFKLTRDAIELNAANYTVWHFRRVLLR-----------SLQKDLQEEMNYIIAIIEE 107
Query: 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDE 160
K+Y WHHR+ +L + EL + D++N+HAW +R++V R ++E
Sbjct: 108 QPKNYQVWHHRR-VLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-RLWDNE 165
Query: 161 LKYTEDMICNNFSNYSAWHXXXXXXXXXXXXXVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220
L+Y + ++ + N S W+ G+ S VL E ++ + I P +
Sbjct: 166 LQYVDQLLKEDVRNNSVWNQRHFVISNTT-----GY-SDRAVLEREVQYTLEMIKLVPHN 219
Query: 221 QSGWFY 226
+S W Y
Sbjct: 220 ESAWNY 225
>pdb|2F0Y|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|3E37|A Chain A, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 379
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 19/186 (10%)
Query: 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100
S+ A +L+ +E N YT W++R++ ++ SL+ L EE+ + + + +
Sbjct: 113 SERAFKLTRDAIELNAANYTVWHFRRVLLK-----------SLQKDLHEEMNYITAIIEE 161
Query: 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDE 160
K+Y WHHR+ +L + EL + D++N+HAW +R++V + ++E
Sbjct: 162 QPKNYQVWHHRR-VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-KLWDNE 219
Query: 161 LKYTEDMICNNFSNYSAWHXXXXXXXXXXXXXVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220
L+Y + ++ + N S W+ G+ + VL E ++ + I P +
Sbjct: 220 LQYVDQLLKEDVRNNSVWNQRYFVISNTT-----GY-NDRAVLEREVQYTLEMIKLVPHN 273
Query: 221 QSGWFY 226
+S W Y
Sbjct: 274 ESAWNY 279
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/145 (19%), Positives = 61/145 (42%), Gaps = 13/145 (8%)
Query: 91 LRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVA 150
++ A+ N +Y WH R+ +L + E+ + + +N+ W++RR +
Sbjct: 117 FKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176
Query: 151 ASMNRSEEDELKYTEDMICNNFSNYSAWHXXXXXXXXXXXXXVEGFVSKEKVLPDEYEFV 210
+ R EL++ D++ + NY AW + + + K+ +E ++V
Sbjct: 177 EWL-RDPSQELEFIADILNQDAKNYHAWQHR------------QWVIQEFKLWDNELQYV 223
Query: 211 HQAIFTDPDDQSGWFYHLWLLDQTV 235
Q + D + S W +++ T
Sbjct: 224 DQLLKEDVRNNSVWNQRYFVISNTT 248
>pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|A Chain A, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|A Chain A, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|A Chain A, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2H6G|A Chain A, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
pdb|2H6H|A Chain A, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
pdb|2H6I|A Chain A, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
pdb|2IEJ|A Chain A, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
Length = 382
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 19/186 (10%)
Query: 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100
S+ A +L+ +E N YT W++R++ ++ SL+ L EE+ + + + +
Sbjct: 113 SERAFKLTRDAIELNAANYTVWHFRRVLLK-----------SLQKDLHEEMNYITAIIEE 161
Query: 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDE 160
K+Y WHHR+ +L + EL + D++N+HAW +R++V + ++E
Sbjct: 162 QPKNYQVWHHRR-VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-KLWDNE 219
Query: 161 LKYTEDMICNNFSNYSAWHXXXXXXXXXXXXXVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220
L+Y + ++ + N S W+ G+ + VL E ++ + I P +
Sbjct: 220 LQYVDQLLKEDVRNNSVWNQRYFVISNTT-----GY-NDRAVLEREVQYTLEMIKLVPHN 273
Query: 221 QSGWFY 226
+S W Y
Sbjct: 274 ESAWNY 279
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/145 (19%), Positives = 61/145 (42%), Gaps = 13/145 (8%)
Query: 91 LRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVA 150
++ A+ N +Y WH R+ +L + E+ + + +N+ W++RR +
Sbjct: 117 FKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176
Query: 151 ASMNRSEEDELKYTEDMICNNFSNYSAWHXXXXXXXXXXXXXVEGFVSKEKVLPDEYEFV 210
+ R EL++ D++ + NY AW + + + K+ +E ++V
Sbjct: 177 EWL-RDPSQELEFIADILNQDAKNYHAWQHR------------QWVIQEFKLWDNELQYV 223
Query: 211 HQAIFTDPDDQSGWFYHLWLLDQTV 235
Q + D + S W +++ T
Sbjct: 224 DQLLKEDVRNNSVWNQRYFVISNTT 248
>pdb|3DRA|A Chain A, Candida Albicans Protein Geranylgeranyltransferase-I
Complexed With Ggpp
Length = 306
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 55 NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114
N + Y WNYR+L + + N++D D + E ++E+ L + K++ W +RKW+
Sbjct: 99 NEKNYQIWNYRQLIIGQIMELNNNDFDPYR-----EFDILEAMLSSDPKNHHVWSYRKWL 153
Query: 115 LSKGHSSID-NELRLLDKFQKADSRNFHAWNYRRFVAAS-----MNRSEEDELKYTEDMI 168
+ D EL +DK D +N AW++R F+ S + + ++EL Y +D I
Sbjct: 154 VDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKI 213
Query: 169 CNNFSNYSAWH 179
N S W+
Sbjct: 214 VKCPQNPSTWN 224
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 23/196 (11%)
Query: 40 YSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR 99
YS+ A+ ++ + YT W YR +++ N L +EL E
Sbjct: 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRN----------LYDELDWCEEIAL 97
Query: 100 QNFKSYGAWHHRKWILSKGHSSIDN------ELRLLDKFQKADSRNFHAWNYRRFVAASM 153
N K+Y W++R+ I+ + +N E +L+ +D +N H W+YR+++ +
Sbjct: 98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTF 157
Query: 154 N-RSEEDELKYTEDMICNNFSNYSAWHXXXXXXXXXXXXXVEGFVSKEKVLPDEYEFVHQ 212
+ ++ EL + + +I + N SAW + ++ + + +E +V
Sbjct: 158 DLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS------KKHLATDNTIDEELNYVKD 211
Query: 213 AIFTDPDDQSGWFYHL 228
I P + S W Y L
Sbjct: 212 KIVKCPQNPSTWNYLL 227
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 25 RVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLK 84
+++ Q + ++N ++ +L ++P+ + W+YRK V ND+
Sbjct: 110 QLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDA------ 163
Query: 85 SILDEELRVVESALRQNFKSYGAWHHRKWIL-SKGH----SSIDNELRLL-DKFQKADSR 138
+EL V+ + + K+ AW HR ++L SK H ++ID EL + DK K +
Sbjct: 164 ----KELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQ 218
Query: 139 NFHAWNYRRFVAASMNRS 156
N WNY + +RS
Sbjct: 219 NPSTWNYLLGIHERFDRS 236
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 140 FHAWNYRRFVAASM-NRSEEDELKYTEDMICNNFSNYSAWHXXXXXXXXXXXXXVEGFVS 198
+ W YR + ++ NR+ DEL + E++ +N NY W+ F
Sbjct: 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126
Query: 199 KEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232
E++ + + +DP + W Y WL+D
Sbjct: 127 YR-----EFDILEAMLSSDPKNHHVWSYRKWLVD 155
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 17/148 (11%)
Query: 91 LRVVESALRQNFKSYGAWHHRKWILSK-GHSSIDNELRLLDKFQKADSRNFHAWNYRRFV 149
L + E + + Y W +R IL + ++ +EL ++ + +N+ WNYR+ +
Sbjct: 53 LHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLI 112
Query: 150 AAS---MNRSEED---ELKYTEDMICNNFSNYSAWHXXXXXXXXXXXXXVEGFVSKEKVL 203
+N ++ D E E M+ ++ N+ W V+ F
Sbjct: 113 IGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVW--------SYRKWLVDTFDLHNDA- 163
Query: 204 PDEYEFVHQAIFTDPDDQSGWFYHLWLL 231
E FV + I TD + S W + +LL
Sbjct: 164 -KELSFVDKVIDTDLKNNSAWSHRFFLL 190
>pdb|3SFX|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tipifarnib
pdb|3SFY|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Ethylenediamine Inhibitor 2
Length = 349
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 73/188 (38%), Gaps = 60/188 (31%)
Query: 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100
S+ A+EL+ ++ NP YT W YR + SL L++ELR++ Q
Sbjct: 69 SERALELTEIIVRMNPAHYTVWQYRFSLLT-----------SLNKSLEDELRLMNEFAVQ 117
Query: 101 NFKSYGAWHHRKWILSKG------------HSSI-------------------------- 122
N KSY WHHR +L + H S+
Sbjct: 118 NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRI 177
Query: 123 -----DNELRLLDKFQKADSRNFHAWNYRRFV------AASMNRSEEDELKYTEDMICNN 171
+EL ++ + D RN AW +R ++ A + +RS +DEL Y I
Sbjct: 178 SEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI 237
Query: 172 FSNYSAWH 179
N SAW+
Sbjct: 238 PHNVSAWN 245
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 123 DNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHXXX 182
+ L L + + + ++ W YR + S+N+S EDEL+ + N +Y WH
Sbjct: 70 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWH--- 126
Query: 183 XXXXXXXXXXVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWL 230
++ ++ V E E++H ++ DP + W Y WL
Sbjct: 127 -----HRLLLLDRISPQDPV--SEIEYIHGSLLPDPKNYHTWAYLHWL 167
>pdb|3Q73|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase, Apo
Enzyme
pdb|3Q75|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tkcvvm Peptide
pdb|3Q78|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fspp And Ddptasacniq Peptide
pdb|3Q79|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Farnesyl-Ddptasacniq Product
pdb|3Q7A|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And L-778,123
pdb|3Q7F|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And Ethylenediamine Inhibitor 1
Length = 349
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 73/188 (38%), Gaps = 60/188 (31%)
Query: 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100
S+ A+EL+ ++ NP YT W YR + SL L++ELR++ Q
Sbjct: 70 SERALELTEIIVRMNPAHYTVWQYRFSLLT-----------SLNKSLEDELRLMNEFAVQ 118
Query: 101 NFKSYGAWHHRKWILSKG------------HSSI-------------------------- 122
N KSY WHHR +L + H S+
Sbjct: 119 NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRI 178
Query: 123 -----DNELRLLDKFQKADSRNFHAWNYRRFV------AASMNRSEEDELKYTEDMICNN 171
+EL ++ + D RN AW +R ++ A + +RS +DEL Y I
Sbjct: 179 SEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI 238
Query: 172 FSNYSAWH 179
N SAW+
Sbjct: 239 PHNVSAWN 246
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 123 DNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHXXX 182
+ L L + + + ++ W YR + S+N+S EDEL+ + N +Y WH
Sbjct: 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWH--- 127
Query: 183 XXXXXXXXXXVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWL 230
++ ++ V E E++H ++ DP + W Y WL
Sbjct: 128 -----HRLLLLDRISPQDPV--SEIEYIHGSLLPDPKNYHTWAYLHWL 168
>pdb|1E8T|A Chain A, Structure Of The Multifunctional Paramyxovirus
Hemagglutinin-Neuraminidase
pdb|1E8T|B Chain B, Structure Of The Multifunctional Paramyxovirus
Hemagglutinin-Neuraminidase
pdb|1E8U|A Chain A, Structure Of The Multifunctional Paramyxovirus
Hemagglutinin-Neuraminidase
pdb|1E8U|B Chain B, Structure Of The Multifunctional Paramyxovirus
Hemagglutinin-Neuraminidase
pdb|1E8V|A Chain A, Structure Of The Multifunctional Paramyxovirus
Hemagglutinin-Neuraminidase
pdb|1E8V|B Chain B, Structure Of The Multifunctional Paramyxovirus
Hemagglutinin-Neuraminidase
pdb|1USR|A Chain A, Newcastle Disease Virus Hemagglutinin-Neuraminidase:
Evidence For A Second Sialic Acid Binding Site And
Implications For Fusion
pdb|1USR|B Chain B, Newcastle Disease Virus Hemagglutinin-Neuraminidase:
Evidence For A Second Sialic Acid Binding Site And
Implications For Fusion
pdb|1USX|A Chain A, Crystal Structure Of The Newcastle Disease Virus
Hemagglutinin-Neuraminidase Complexed With Thiosialoside
pdb|1USX|B Chain B, Crystal Structure Of The Newcastle Disease Virus
Hemagglutinin-Neuraminidase Complexed With Thiosialoside
pdb|1USX|C Chain C, Crystal Structure Of The Newcastle Disease Virus
Hemagglutinin-Neuraminidase Complexed With Thiosialoside
Length = 454
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 225 FYHLWLLDQTVRVDSPQLVSSWPTPGSDLILLGDRCLDGCASSPFTRFHLDSRTFPLVLY 284
Y + + ++T + SP +++ PGS RC + C + +T +PL+ Y
Sbjct: 303 LYPMTVSNKTATLHSPYTFNAFTRPGSIPCQASARCPNSCVTGVYT------DPYPLIFY 356
Query: 285 FNQAVEGVNSSTITVDSE 302
N + GV + + DSE
Sbjct: 357 RNHTLRGVFGTML--DSE 372
>pdb|4FZH|A Chain A, Structure Of The Ulster Strain Newcastle Disease Virus
Hemagglutinin- Neuraminidase Reveals Auto-Inhibitory
Interactions Associated With Low Virulence
pdb|4FZH|B Chain B, Structure Of The Ulster Strain Newcastle Disease Virus
Hemagglutinin- Neuraminidase Reveals Auto-Inhibitory
Interactions Associated With Low Virulence
pdb|4FZH|C Chain C, Structure Of The Ulster Strain Newcastle Disease Virus
Hemagglutinin- Neuraminidase Reveals Auto-Inhibitory
Interactions Associated With Low Virulence
pdb|4FZH|D Chain D, Structure Of The Ulster Strain Newcastle Disease Virus
Hemagglutinin- Neuraminidase Reveals Auto-Inhibitory
Interactions Associated With Low Virulence
Length = 536
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 225 FYHLWLLDQTVRVDSPQLVSSWPTPGSDLILLGDRCLDGCASSPFTRFHLDSRTFPLVLY 284
Y + + ++T + SP ++ PGS RC + C + +T +PLV Y
Sbjct: 346 LYPMTVSNKTATLHSPYTFDAFTRPGSVPCQASARCPNSCVTGVYT------DPYPLVFY 399
Query: 285 FNQAVEGV 292
N + GV
Sbjct: 400 RNHTLRGV 407
>pdb|3UXF|A Chain A, Structure Of The Fimbrial Protein Fimp From Actonomyces
Oris
Length = 488
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 198 SKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVRVDSPQLVSSWPTPGS 251
+ +KV+P E +FV T+P D + W Y++ + + + V+ P PGS
Sbjct: 145 TPDKVIPAE-DFVVTLPMTNPQDTAKWNYNVHVYPKNTLSGVDKQVTDKPAPGS 197
>pdb|3T1E|A Chain A, The Structure Of The Newcastle Disease Virus
Hemagglutinin- Neuraminidase (Hn) Ectodomain Reveals A
4-Helix Bundle Stalk
pdb|3T1E|B Chain B, The Structure Of The Newcastle Disease Virus
Hemagglutinin- Neuraminidase (Hn) Ectodomain Reveals A
4-Helix Bundle Stalk
pdb|3T1E|E Chain E, The Structure Of The Newcastle Disease Virus
Hemagglutinin- Neuraminidase (Hn) Ectodomain Reveals A
4-Helix Bundle Stalk
pdb|3T1E|F Chain F, The Structure Of The Newcastle Disease Virus
Hemagglutinin- Neuraminidase (Hn) Ectodomain Reveals A
4-Helix Bundle Stalk
Length = 537
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 225 FYHLWLLDQTVRVDSPQLVSSWPTPGSDLILLGDRCLDGCASSPFTRFHLDSRTFPLVLY 284
Y + + + T + SP +++ PGS RC + C + +T +PLV +
Sbjct: 392 LYPMTVNNNTATLHSPYTFNAFTRPGSVPCQASARCPNSCVTGVYT------DPYPLVFH 445
Query: 285 FNQAVEGV 292
N + GV
Sbjct: 446 RNHTLRGV 453
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,764,391
Number of Sequences: 62578
Number of extensions: 558507
Number of successful extensions: 2002
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1773
Number of HSP's gapped (non-prelim): 68
length of query: 450
length of database: 14,973,337
effective HSP length: 102
effective length of query: 348
effective length of database: 8,590,381
effective search space: 2989452588
effective search space used: 2989452588
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)